Query 013303
Match_columns 446
No_of_seqs 440 out of 3246
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 08:03:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xve_A Flavin-containing monoo 100.0 2E-64 6.7E-69 508.3 39.6 402 1-423 1-414 (464)
2 2gv8_A Monooxygenase; FMO, FAD 100.0 2.8E-56 9.6E-61 447.9 36.1 372 2-395 6-409 (447)
3 4a9w_A Monooxygenase; baeyer-v 100.0 7.3E-41 2.5E-45 325.4 26.1 302 2-344 3-351 (357)
4 3gwf_A Cyclohexanone monooxyge 100.0 3.2E-40 1.1E-44 336.8 23.2 309 3-341 9-453 (540)
5 4ap3_A Steroid monooxygenase; 100.0 1.2E-38 4.3E-43 325.7 26.3 309 3-341 22-467 (549)
6 3uox_A Otemo; baeyer-villiger 100.0 2E-38 6.8E-43 323.9 26.9 308 3-341 10-462 (545)
7 1w4x_A Phenylacetone monooxyge 100.0 3E-37 1E-41 316.5 26.5 310 3-342 17-463 (542)
8 3d1c_A Flavin-containing putat 100.0 6.6E-37 2.2E-41 299.4 21.5 311 3-357 5-351 (369)
9 3lzw_A Ferredoxin--NADP reduct 100.0 2.6E-36 8.9E-41 290.6 18.0 280 3-341 8-311 (332)
10 3f8d_A Thioredoxin reductase ( 100.0 7.6E-36 2.6E-40 286.1 19.5 274 2-341 15-313 (323)
11 3fbs_A Oxidoreductase; structu 100.0 1.8E-35 6.3E-40 280.1 21.6 272 1-341 1-288 (297)
12 2q7v_A Thioredoxin reductase; 100.0 6.8E-35 2.3E-39 280.2 23.4 278 3-343 9-310 (325)
13 2zbw_A Thioredoxin reductase; 100.0 3.5E-35 1.2E-39 283.3 20.1 281 3-342 6-314 (335)
14 3itj_A Thioredoxin reductase 1 100.0 3.6E-35 1.2E-39 283.3 17.2 287 2-341 22-331 (338)
15 2q0l_A TRXR, thioredoxin reduc 100.0 1.2E-34 4E-39 276.8 19.4 284 2-341 1-305 (311)
16 3ab1_A Ferredoxin--NADP reduct 100.0 3.4E-34 1.2E-38 279.3 21.9 283 2-342 14-325 (360)
17 3r9u_A Thioredoxin reductase; 100.0 4.9E-34 1.7E-38 272.6 18.7 276 2-341 4-308 (315)
18 1fl2_A Alkyl hydroperoxide red 100.0 5.8E-34 2E-38 271.8 19.0 276 2-341 1-301 (310)
19 3cty_A Thioredoxin reductase; 100.0 1.9E-33 6.6E-38 269.4 21.1 281 3-342 17-313 (319)
20 2a87_A TRXR, TR, thioredoxin r 100.0 1.9E-33 6.5E-38 271.4 19.2 282 2-341 14-312 (335)
21 4gcm_A TRXR, thioredoxin reduc 100.0 3.5E-33 1.2E-37 266.8 19.1 274 2-341 6-302 (312)
22 1trb_A Thioredoxin reductase; 100.0 3.5E-33 1.2E-37 267.6 18.6 280 2-341 5-310 (320)
23 1vdc_A NTR, NADPH dependent th 100.0 6.7E-33 2.3E-37 267.1 19.3 282 3-341 9-319 (333)
24 4a5l_A Thioredoxin reductase; 100.0 4.2E-33 1.4E-37 266.3 17.1 279 2-340 4-307 (314)
25 4b63_A L-ornithine N5 monooxyg 100.0 3.3E-32 1.1E-36 275.9 23.5 204 2-230 39-281 (501)
26 1hyu_A AHPF, alkyl hydroperoxi 100.0 4.1E-32 1.4E-36 276.7 22.8 276 2-341 212-512 (521)
27 3oc4_A Oxidoreductase, pyridin 100.0 3.4E-32 1.2E-36 273.1 21.2 276 1-344 1-315 (452)
28 3urh_A Dihydrolipoyl dehydroge 100.0 4.8E-33 1.6E-37 282.2 13.7 298 2-344 25-364 (491)
29 4fk1_A Putative thioredoxin re 100.0 2.9E-32 9.8E-37 259.5 17.5 274 2-340 6-295 (304)
30 1onf_A GR, grase, glutathione 100.0 3.3E-33 1.1E-37 283.7 10.1 292 1-343 1-371 (500)
31 2wpf_A Trypanothione reductase 100.0 6.4E-33 2.2E-37 281.0 10.2 292 3-343 8-355 (495)
32 1mo9_A ORF3; nucleotide bindin 100.0 2.2E-32 7.4E-37 279.2 13.3 293 2-343 43-378 (523)
33 2r9z_A Glutathione amide reduc 100.0 1.3E-32 4.6E-37 276.6 11.5 287 2-343 4-327 (463)
34 3l8k_A Dihydrolipoyl dehydroge 100.0 7.1E-33 2.4E-37 279.1 9.4 286 3-343 5-333 (466)
35 2qae_A Lipoamide, dihydrolipoy 100.0 3E-32 1E-36 274.8 13.6 298 1-343 1-340 (468)
36 3iwa_A FAD-dependent pyridine 100.0 8.2E-32 2.8E-36 271.9 16.4 284 2-344 3-330 (472)
37 3ef6_A Toluene 1,2-dioxygenase 100.0 5.9E-32 2E-36 267.9 13.5 273 1-344 1-310 (410)
38 1zmd_A Dihydrolipoyl dehydroge 100.0 4.2E-32 1.4E-36 274.2 12.7 297 2-343 6-345 (474)
39 2bc0_A NADH oxidase; flavoprot 100.0 1.7E-31 5.7E-36 270.7 17.0 277 2-344 35-362 (490)
40 1ebd_A E3BD, dihydrolipoamide 100.0 2.1E-32 7.2E-37 274.9 10.3 298 2-343 3-333 (455)
41 1xdi_A RV3303C-LPDA; reductase 100.0 1.1E-31 3.9E-36 272.6 15.6 302 1-343 1-342 (499)
42 1ojt_A Surface protein; redox- 100.0 4.5E-32 1.6E-36 274.3 12.3 296 2-344 6-350 (482)
43 3s5w_A L-ornithine 5-monooxyge 100.0 4.8E-31 1.6E-35 265.8 19.7 297 3-321 31-419 (463)
44 1ges_A Glutathione reductase; 100.0 1.4E-32 4.9E-37 275.5 8.5 288 2-343 4-328 (450)
45 3ics_A Coenzyme A-disulfide re 100.0 6.7E-32 2.3E-36 279.8 13.7 277 2-342 36-352 (588)
46 3dgz_A Thioredoxin reductase 2 100.0 3.4E-32 1.2E-36 275.6 10.9 297 2-344 6-353 (488)
47 3ntd_A FAD-dependent pyridine 100.0 1.1E-31 3.8E-36 277.1 14.1 278 2-344 1-339 (565)
48 4eqs_A Coenzyme A disulfide re 100.0 7E-32 2.4E-36 269.2 11.6 279 3-345 1-313 (437)
49 2hqm_A GR, grase, glutathione 100.0 5.8E-32 2E-36 273.2 11.1 296 3-343 12-347 (479)
50 3dgh_A TRXR-1, thioredoxin red 100.0 1.1E-31 3.9E-36 271.6 13.1 296 2-344 9-353 (483)
51 1v59_A Dihydrolipoamide dehydr 100.0 7.5E-32 2.6E-36 272.7 10.4 296 2-343 5-350 (478)
52 2eq6_A Pyruvate dehydrogenase 100.0 1.3E-31 4.3E-36 269.7 11.9 293 3-344 7-335 (464)
53 1zk7_A HGII, reductase, mercur 100.0 8.2E-32 2.8E-36 271.5 10.6 295 2-343 4-334 (467)
54 3kd9_A Coenzyme A disulfide re 100.0 1.2E-30 4.1E-35 261.7 18.9 273 2-344 3-316 (449)
55 3lad_A Dihydrolipoamide dehydr 100.0 2.6E-31 8.7E-36 268.6 14.0 298 1-344 2-344 (476)
56 1fec_A Trypanothione reductase 100.0 1.2E-31 3.9E-36 271.6 11.2 294 2-343 3-351 (490)
57 2yqu_A 2-oxoglutarate dehydrog 100.0 9.8E-32 3.4E-36 270.1 10.6 291 2-343 1-327 (455)
58 3klj_A NAD(FAD)-dependent dehy 100.0 9.4E-33 3.2E-37 270.7 3.0 260 2-344 9-295 (385)
59 4dna_A Probable glutathione re 100.0 1.2E-31 4.1E-36 270.0 11.1 289 2-343 5-331 (463)
60 3dk9_A Grase, GR, glutathione 100.0 2.2E-31 7.5E-36 269.2 12.9 290 2-343 20-356 (478)
61 3ic9_A Dihydrolipoamide dehydr 100.0 5.7E-32 1.9E-36 274.0 8.5 291 3-342 9-337 (492)
62 4b1b_A TRXR, thioredoxin reduc 100.0 8.8E-32 3E-36 273.2 9.5 298 3-344 43-385 (542)
63 3qfa_A Thioredoxin reductase 1 100.0 1.8E-31 6.2E-36 271.9 11.6 296 2-343 32-380 (519)
64 2a8x_A Dihydrolipoyl dehydroge 100.0 2.2E-31 7.4E-36 268.2 11.8 295 3-342 4-333 (464)
65 3lxd_A FAD-dependent pyridine 100.0 4.5E-31 1.5E-35 262.2 13.4 272 3-344 10-322 (415)
66 3o0h_A Glutathione reductase; 100.0 1.6E-31 5.6E-36 270.4 10.4 288 3-343 27-351 (484)
67 2cdu_A NADPH oxidase; flavoenz 100.0 1.2E-30 4.1E-35 261.9 16.5 278 3-344 1-318 (452)
68 1dxl_A Dihydrolipoamide dehydr 100.0 1.4E-30 4.7E-35 262.9 16.7 302 2-343 6-342 (470)
69 1lvl_A Dihydrolipoamide dehydr 100.0 2.7E-31 9.1E-36 266.9 11.4 294 2-343 5-330 (458)
70 1xhc_A NADH oxidase /nitrite r 100.0 9E-32 3.1E-36 262.4 7.7 265 2-343 8-297 (367)
71 1nhp_A NADH peroxidase; oxidor 100.0 1.4E-30 4.9E-35 261.0 15.2 276 3-344 1-317 (447)
72 2gqw_A Ferredoxin reductase; f 100.0 7.9E-31 2.7E-35 259.5 12.3 266 2-344 7-309 (408)
73 3fg2_P Putative rubredoxin red 100.0 2E-30 6.7E-35 256.6 13.8 271 2-344 1-311 (404)
74 3cgb_A Pyridine nucleotide-dis 100.0 3E-30 1E-34 260.7 14.1 276 2-343 36-353 (480)
75 2v3a_A Rubredoxin reductase; a 100.0 4.4E-30 1.5E-34 252.4 14.8 269 2-343 4-306 (384)
76 2x8g_A Thioredoxin glutathione 100.0 1.5E-30 5.3E-35 270.0 9.6 297 2-343 107-459 (598)
77 1q1r_A Putidaredoxin reductase 100.0 7.5E-30 2.5E-34 254.3 11.9 274 2-344 4-320 (431)
78 2vdc_G Glutamate synthase [NAD 100.0 1.9E-29 6.4E-34 252.1 7.1 262 2-342 122-441 (456)
79 3h8l_A NADH oxidase; membrane 100.0 7.2E-29 2.5E-33 245.9 9.2 273 2-344 1-335 (409)
80 1lqt_A FPRA; NADP+ derivative, 99.9 2.4E-28 8.1E-33 244.4 9.1 261 2-342 3-384 (456)
81 2gag_A Heterotetrameric sarcos 99.9 7.2E-27 2.5E-31 253.3 18.3 280 3-344 129-443 (965)
82 1cjc_A Protein (adrenodoxin re 99.9 6.1E-28 2.1E-32 241.7 7.5 261 2-342 6-392 (460)
83 3k30_A Histamine dehydrogenase 99.9 3.1E-28 1.1E-32 256.2 5.4 258 2-344 391-674 (690)
84 1o94_A Tmadh, trimethylamine d 99.9 6.7E-28 2.3E-32 254.7 7.8 269 2-344 389-699 (729)
85 3sx6_A Sulfide-quinone reducta 99.9 1.3E-27 4.3E-32 238.8 8.5 269 2-341 4-340 (437)
86 1m6i_A Programmed cell death p 99.9 5.1E-28 1.7E-32 245.0 4.9 297 2-344 11-353 (493)
87 4g6h_A Rotenone-insensitive NA 99.9 5.3E-27 1.8E-31 237.3 10.6 278 2-347 42-403 (502)
88 1ps9_A 2,4-dienoyl-COA reducta 99.9 1.3E-26 4.3E-31 243.3 11.3 244 2-340 373-671 (671)
89 1gte_A Dihydropyrimidine dehyd 99.9 1.1E-25 3.7E-30 245.7 11.4 263 2-341 187-504 (1025)
90 1y56_A Hypothetical protein PH 99.9 1.2E-24 4.2E-29 220.1 14.4 265 3-349 109-381 (493)
91 3h28_A Sulfide-quinone reducta 99.9 4.6E-26 1.6E-30 227.1 1.8 266 1-341 1-329 (430)
92 3vrd_B FCCB subunit, flavocyto 99.9 3.7E-23 1.3E-27 204.2 16.8 270 2-341 2-320 (401)
93 3hyw_A Sulfide-quinone reducta 99.9 7.2E-24 2.5E-28 211.0 5.4 268 1-341 1-329 (430)
94 3fpz_A Thiazole biosynthetic e 99.7 4.3E-19 1.5E-23 170.1 -8.2 150 3-231 66-217 (326)
95 2ywl_A Thioredoxin reductase r 99.6 7.4E-15 2.5E-19 127.9 12.4 112 2-170 1-112 (180)
96 2gqf_A Hypothetical protein HI 99.5 4.9E-15 1.7E-19 145.5 7.1 204 3-225 5-259 (401)
97 3v76_A Flavoprotein; structura 99.4 1.9E-12 6.6E-17 127.5 12.8 156 2-170 27-191 (417)
98 3cgv_A Geranylgeranyl reductas 99.4 2.2E-12 7.4E-17 126.5 12.2 153 2-166 4-162 (397)
99 2e5v_A L-aspartate oxidase; ar 99.4 2.8E-13 9.5E-18 136.0 4.8 314 4-343 1-371 (472)
100 3oz2_A Digeranylgeranylglycero 99.3 4.5E-12 1.5E-16 123.9 12.7 157 2-167 4-163 (397)
101 3qj4_A Renalase; FAD/NAD(P)-bi 99.3 1.4E-12 4.7E-17 125.5 8.7 151 2-164 1-163 (342)
102 3nix_A Flavoprotein/dehydrogen 99.3 1.7E-12 5.7E-17 128.5 8.0 155 3-166 6-166 (421)
103 2qa1_A PGAE, polyketide oxygen 99.3 1.5E-11 5E-16 124.3 13.6 152 2-168 11-167 (500)
104 3ces_A MNMG, tRNA uridine 5-ca 99.3 4.1E-12 1.4E-16 129.8 9.3 183 2-228 28-221 (651)
105 2qa2_A CABE, polyketide oxygen 99.3 1.7E-11 5.9E-16 123.8 13.6 154 2-167 12-167 (499)
106 3fmw_A Oxygenase; mithramycin, 99.3 1.6E-11 5.4E-16 125.8 12.8 152 2-167 49-208 (570)
107 2bry_A NEDD9 interacting prote 99.3 3.7E-12 1.3E-16 128.6 7.7 138 2-168 92-232 (497)
108 1yvv_A Amine oxidase, flavin-c 99.3 3.1E-11 1.1E-15 115.5 13.8 154 1-169 1-165 (336)
109 2cul_A Glucose-inhibited divis 99.3 1.6E-11 5.6E-16 111.2 10.8 125 2-170 3-129 (232)
110 2i0z_A NAD(FAD)-utilizing dehy 99.2 7.6E-12 2.6E-16 124.8 7.6 156 1-168 25-193 (447)
111 3rp8_A Flavoprotein monooxygen 99.2 1E-11 3.5E-16 122.3 8.1 157 2-169 23-184 (407)
112 3nlc_A Uncharacterized protein 99.2 1.8E-11 6E-16 124.1 9.2 157 2-166 107-277 (549)
113 3ihg_A RDME; flavoenzyme, anth 99.2 6.6E-11 2.3E-15 120.8 13.5 159 2-166 5-183 (535)
114 1rp0_A ARA6, thiazole biosynth 99.2 7.6E-11 2.6E-15 110.2 12.1 135 3-165 40-190 (284)
115 2uzz_A N-methyl-L-tryptophan o 99.2 5.4E-11 1.8E-15 115.5 11.0 65 100-172 146-210 (372)
116 3e1t_A Halogenase; flavoprotei 99.2 2.9E-11 1E-15 122.7 9.4 155 3-168 8-174 (512)
117 2vou_A 2,6-dihydroxypyridine h 99.2 4.1E-11 1.4E-15 117.6 10.2 142 2-167 5-154 (397)
118 1k0i_A P-hydroxybenzoate hydro 99.2 1.1E-10 3.7E-15 114.4 12.5 158 1-169 1-166 (394)
119 2xdo_A TETX2 protein; tetracyc 99.2 8.7E-11 3E-15 115.3 11.1 146 2-169 26-185 (398)
120 2gmh_A Electron transfer flavo 99.2 1.6E-10 5.3E-15 119.0 13.0 158 2-167 35-218 (584)
121 3dme_A Conserved exported prot 99.2 1.5E-10 5E-15 112.1 12.2 65 100-168 147-211 (369)
122 3alj_A 2-methyl-3-hydroxypyrid 99.2 7.3E-11 2.5E-15 115.0 10.0 145 2-167 11-161 (379)
123 1y0p_A Fumarate reductase flav 99.2 2.5E-10 8.5E-15 117.4 14.1 164 2-167 126-318 (571)
124 2x3n_A Probable FAD-dependent 99.2 1.1E-10 3.8E-15 114.5 11.1 152 3-167 7-167 (399)
125 2zxi_A TRNA uridine 5-carboxym 99.1 3.2E-11 1.1E-15 122.8 6.9 183 2-229 27-221 (637)
126 1qo8_A Flavocytochrome C3 fuma 99.1 3.1E-10 1.1E-14 116.5 14.3 163 3-167 122-313 (566)
127 3atr_A Conserved archaeal prot 99.1 1.2E-10 4E-15 116.4 10.6 151 2-167 6-163 (453)
128 3i3l_A Alkylhalidase CMLS; fla 99.1 1E-09 3.5E-14 112.7 17.1 149 2-166 23-188 (591)
129 2r0c_A REBC; flavin adenine di 99.1 1.9E-09 6.3E-14 110.3 18.3 156 3-167 27-197 (549)
130 3c96_A Flavin-containing monoo 99.1 6.6E-10 2.2E-14 109.5 14.4 159 2-169 4-172 (410)
131 3cp8_A TRNA uridine 5-carboxym 99.1 9.6E-11 3.3E-15 119.7 8.1 184 2-228 21-215 (641)
132 1ryi_A Glycine oxidase; flavop 99.1 2.8E-10 9.7E-15 110.8 10.9 61 99-167 160-220 (382)
133 3ps9_A TRNA 5-methylaminomethy 99.1 4.5E-10 1.5E-14 117.8 12.7 61 100-167 414-474 (676)
134 4hb9_A Similarities with proba 99.1 4.4E-10 1.5E-14 110.4 11.3 159 2-169 1-169 (412)
135 1y56_B Sarcosine oxidase; dehy 99.0 6.7E-10 2.3E-14 108.2 10.7 59 100-166 146-205 (382)
136 3nyc_A D-arginine dehydrogenas 99.0 3.3E-10 1.1E-14 110.2 8.4 60 100-167 151-210 (381)
137 2gf3_A MSOX, monomeric sarcosi 99.0 7.9E-10 2.7E-14 107.9 10.9 60 100-167 147-206 (389)
138 3dje_A Fructosyl amine: oxygen 99.0 4.1E-10 1.4E-14 111.9 8.8 65 100-171 158-226 (438)
139 3k7m_X 6-hydroxy-L-nicotine ox 99.0 2.2E-10 7.5E-15 113.6 6.6 42 2-43 1-42 (431)
140 1d4d_A Flavocytochrome C fumar 99.0 2.2E-09 7.4E-14 110.3 13.6 163 3-167 127-318 (572)
141 3jsk_A Cypbp37 protein; octame 99.0 2.5E-10 8.4E-15 108.2 5.8 139 2-166 79-251 (344)
142 3da1_A Glycerol-3-phosphate de 99.0 1.3E-09 4.3E-14 111.6 11.4 65 100-166 167-232 (561)
143 3pvc_A TRNA 5-methylaminomethy 99.0 2.1E-09 7.4E-14 112.8 13.4 62 100-167 409-470 (689)
144 2dkh_A 3-hydroxybenzoate hydro 99.0 2.7E-09 9.2E-14 111.0 13.3 162 3-168 33-213 (639)
145 2oln_A NIKD protein; flavoprot 99.0 1.9E-09 6.5E-14 105.6 10.8 59 101-167 151-209 (397)
146 2gag_B Heterotetrameric sarcos 99.0 2E-09 6.7E-14 105.7 10.9 61 99-166 170-230 (405)
147 4at0_A 3-ketosteroid-delta4-5a 99.0 8.1E-09 2.8E-13 104.6 15.6 60 104-166 203-264 (510)
148 3kkj_A Amine oxidase, flavin-c 99.0 4.3E-10 1.5E-14 103.6 5.3 43 1-43 1-43 (336)
149 2qcu_A Aerobic glycerol-3-phos 99.0 5.5E-09 1.9E-13 105.6 13.7 64 101-167 147-211 (501)
150 1pn0_A Phenol 2-monooxygenase; 98.9 1.3E-08 4.5E-13 106.1 15.2 161 3-169 9-233 (665)
151 3i6d_A Protoporphyrinogen oxid 98.9 3.9E-09 1.3E-13 105.6 9.4 42 2-43 5-52 (470)
152 2cul_A Glucose-inhibited divis 98.9 2.2E-09 7.6E-14 97.0 6.7 144 198-343 4-230 (232)
153 3c4a_A Probable tryptophan hyd 98.9 7.3E-10 2.5E-14 108.0 3.6 134 3-167 1-144 (381)
154 3ka7_A Oxidoreductase; structu 98.8 1.2E-08 4.2E-13 100.7 11.3 40 3-42 1-40 (425)
155 2gjc_A Thiazole biosynthetic e 98.8 1.7E-08 5.7E-13 95.1 11.3 137 3-165 66-238 (326)
156 2eq6_A Pyruvate dehydrogenase 98.8 2.7E-08 9.4E-13 99.5 13.3 106 2-172 169-275 (464)
157 3c4n_A Uncharacterized protein 98.8 3.4E-09 1.2E-13 104.2 6.4 60 100-167 169-237 (405)
158 2weu_A Tryptophan 5-halogenase 98.8 4.9E-09 1.7E-13 106.3 7.3 60 100-167 170-231 (511)
159 2h88_A Succinate dehydrogenase 98.8 3.8E-08 1.3E-12 101.4 13.7 65 101-168 153-219 (621)
160 2yqu_A 2-oxoglutarate dehydrog 98.8 2.2E-08 7.5E-13 99.9 11.6 102 2-172 167-268 (455)
161 2aqj_A Tryptophan halogenase, 98.8 6.9E-09 2.3E-13 105.9 7.9 61 100-167 162-223 (538)
162 2wdq_A Succinate dehydrogenase 98.8 1E-08 3.5E-13 105.4 8.9 64 102-167 142-207 (588)
163 2v3a_A Rubredoxin reductase; a 98.8 2.6E-08 9E-13 97.1 11.2 101 2-170 145-245 (384)
164 2rgh_A Alpha-glycerophosphate 98.8 2.4E-08 8.3E-13 102.3 11.2 65 101-167 186-251 (571)
165 1ebd_A E3BD, dihydrolipoamide 98.8 7.8E-08 2.7E-12 95.9 14.3 105 2-172 170-274 (455)
166 1ges_A Glutathione reductase; 98.8 3.9E-08 1.3E-12 98.0 12.0 102 2-171 167-268 (450)
167 1pj5_A N,N-dimethylglycine oxi 98.7 2E-08 6.7E-13 107.8 9.9 59 100-166 148-207 (830)
168 1v59_A Dihydrolipoamide dehydr 98.7 7.4E-08 2.5E-12 96.7 13.5 105 2-171 183-290 (478)
169 1nhp_A NADH peroxidase; oxidor 98.7 3.8E-08 1.3E-12 98.0 10.3 104 2-174 149-252 (447)
170 1kf6_A Fumarate reductase flav 98.7 8.5E-08 2.9E-12 98.8 13.1 65 102-169 133-200 (602)
171 2e4g_A Tryptophan halogenase; 98.7 1.9E-08 6.5E-13 102.8 8.0 60 100-167 191-253 (550)
172 2pyx_A Tryptophan halogenase; 98.7 1.7E-08 6E-13 102.6 7.4 60 100-167 172-234 (526)
173 3ic9_A Dihydrolipoamide dehydr 98.7 1.5E-07 5.2E-12 94.7 14.1 105 2-172 174-278 (492)
174 3s5w_A L-ornithine 5-monooxyge 98.7 7.2E-08 2.5E-12 96.3 11.6 86 116-206 329-418 (463)
175 2qae_A Lipoamide, dihydrolipoy 98.7 1.4E-07 4.8E-12 94.4 13.7 105 2-171 174-279 (468)
176 3urh_A Dihydrolipoyl dehydroge 98.7 1.7E-07 5.8E-12 94.4 14.1 106 2-172 198-304 (491)
177 1onf_A GR, grase, glutathione 98.7 1.3E-07 4.4E-12 95.5 12.8 103 2-171 176-278 (500)
178 1dxl_A Dihydrolipoamide dehydr 98.7 1.2E-07 4.1E-12 95.0 12.3 105 2-171 177-282 (470)
179 2bs2_A Quinol-fumarate reducta 98.7 4.1E-08 1.4E-12 101.9 8.8 63 102-167 157-221 (660)
180 2a8x_A Dihydrolipoyl dehydroge 98.7 2.3E-07 8E-12 92.7 14.0 105 2-172 171-275 (464)
181 1lvl_A Dihydrolipoamide dehydr 98.6 6E-08 2E-12 96.8 9.2 102 2-172 171-272 (458)
182 1zmd_A Dihydrolipoyl dehydroge 98.6 3E-07 1E-11 92.2 14.2 106 2-171 178-285 (474)
183 2r9z_A Glutathione amide reduc 98.6 1.3E-07 4.3E-12 94.6 11.3 102 2-171 166-267 (463)
184 1chu_A Protein (L-aspartate ox 98.6 1E-08 3.6E-13 104.3 3.4 64 102-167 137-209 (540)
185 2e1m_A L-glutamate oxidase; L- 98.6 6.7E-08 2.3E-12 93.2 8.8 43 2-44 44-87 (376)
186 3lad_A Dihydrolipoamide dehydr 98.6 2.4E-07 8.2E-12 92.9 13.3 104 2-171 180-283 (476)
187 3axb_A Putative oxidoreductase 98.6 4.3E-08 1.5E-12 97.6 7.7 61 100-167 178-255 (448)
188 1fec_A Trypanothione reductase 98.6 1.5E-07 5E-12 94.8 11.3 102 2-171 187-291 (490)
189 3ef6_A Toluene 1,2-dioxygenase 98.6 9.4E-08 3.2E-12 94.0 9.6 101 2-170 143-243 (410)
190 3lxd_A FAD-dependent pyridine 98.6 1.9E-07 6.4E-12 91.9 11.6 101 2-170 152-253 (415)
191 1ojt_A Surface protein; redox- 98.6 9.9E-08 3.4E-12 95.9 9.7 105 2-171 185-289 (482)
192 2wpf_A Trypanothione reductase 98.6 1.9E-07 6.4E-12 94.1 11.5 102 2-171 191-295 (495)
193 4dgk_A Phytoene dehydrogenase; 98.6 2.3E-08 7.9E-13 101.0 4.7 41 2-42 1-41 (501)
194 3oc4_A Oxidoreductase, pyridin 98.6 3.2E-07 1.1E-11 91.4 12.9 103 2-173 147-249 (452)
195 1jnr_A Adenylylsulfate reducta 98.6 9E-07 3.1E-11 91.9 16.6 68 103-172 151-224 (643)
196 3fg2_P Putative rubredoxin red 98.6 1.6E-07 5.6E-12 92.1 10.4 102 2-170 142-243 (404)
197 2gqw_A Ferredoxin reductase; f 98.6 1.8E-07 6.3E-12 91.8 10.7 97 2-170 145-241 (408)
198 2hqm_A GR, grase, glutathione 98.6 1.9E-07 6.6E-12 93.7 10.9 102 2-170 185-287 (479)
199 1q1r_A Putidaredoxin reductase 98.6 2.4E-07 8.3E-12 91.6 10.9 101 2-170 149-252 (431)
200 1xdi_A RV3303C-LPDA; reductase 98.6 3E-07 1E-11 92.8 11.7 101 2-171 182-282 (499)
201 3cgb_A Pyridine nucleotide-dis 98.6 1.4E-07 4.7E-12 94.8 9.0 100 2-171 186-285 (480)
202 1zk7_A HGII, reductase, mercur 98.5 2.9E-07 1E-11 92.1 11.3 99 2-171 176-274 (467)
203 3dgh_A TRXR-1, thioredoxin red 98.5 9.2E-07 3.2E-11 88.8 14.9 105 2-171 187-292 (483)
204 3iwa_A FAD-dependent pyridine 98.5 3.7E-07 1.3E-11 91.5 11.8 101 2-170 159-260 (472)
205 2cdu_A NADPH oxidase; flavoenz 98.5 3.5E-07 1.2E-11 91.1 11.1 101 2-171 149-250 (452)
206 3o0h_A Glutathione reductase; 98.5 4.1E-07 1.4E-11 91.4 11.6 102 2-172 191-292 (484)
207 3dk9_A Grase, GR, glutathione 98.5 7.4E-07 2.5E-11 89.4 13.4 106 2-171 187-296 (478)
208 2bc0_A NADH oxidase; flavoprot 98.5 3.7E-07 1.3E-11 91.9 10.9 100 2-171 194-294 (490)
209 4gde_A UDP-galactopyranose mut 98.5 4.2E-08 1.4E-12 99.3 3.9 41 2-42 10-51 (513)
210 3ntd_A FAD-dependent pyridine 98.5 5.5E-07 1.9E-11 92.3 11.7 101 2-170 151-269 (565)
211 1mo9_A ORF3; nucleotide bindin 98.5 4.9E-07 1.7E-11 91.8 11.2 102 3-171 215-319 (523)
212 3dgz_A Thioredoxin reductase 2 98.5 1.7E-06 5.7E-11 87.0 14.6 105 2-171 185-290 (488)
213 4b1b_A TRXR, thioredoxin reduc 98.5 6.7E-07 2.3E-11 90.6 11.3 100 2-171 223-322 (542)
214 1trb_A Thioredoxin reductase; 98.4 9.6E-07 3.3E-11 83.3 11.4 104 2-171 145-250 (320)
215 4gut_A Lysine-specific histone 98.4 6.7E-07 2.3E-11 94.4 11.2 39 2-40 336-374 (776)
216 1m6i_A Programmed cell death p 98.4 7E-07 2.4E-11 89.9 10.6 102 2-171 180-285 (493)
217 4dna_A Probable glutathione re 98.4 9.3E-07 3.2E-11 88.3 11.1 102 2-172 170-272 (463)
218 3nks_A Protoporphyrinogen oxid 98.4 1.4E-07 4.7E-12 94.6 5.0 43 1-43 1-45 (477)
219 3pl8_A Pyranose 2-oxidase; sub 98.4 1.8E-06 6E-11 89.3 12.9 40 2-41 46-85 (623)
220 1xhc_A NADH oxidase /nitrite r 98.4 4.7E-07 1.6E-11 87.5 8.1 93 3-170 144-236 (367)
221 2zbw_A Thioredoxin reductase; 98.4 1.4E-06 4.9E-11 82.8 11.3 103 2-171 152-255 (335)
222 3qfa_A Thioredoxin reductase 1 98.4 3.2E-06 1.1E-10 85.6 14.1 106 2-172 210-319 (519)
223 3l8k_A Dihydrolipoyl dehydroge 98.4 1.4E-06 4.9E-11 87.0 11.2 104 2-171 172-275 (466)
224 3gyx_A Adenylylsulfate reducta 98.4 8.7E-07 3E-11 91.9 9.8 68 102-171 165-238 (662)
225 4eqs_A Coenzyme A disulfide re 98.4 6.6E-07 2.3E-11 88.6 8.6 97 2-171 147-243 (437)
226 2b9w_A Putative aminooxidase; 98.4 2.5E-07 8.6E-12 91.2 5.4 42 2-43 6-48 (424)
227 1rsg_A FMS1 protein; FAD bindi 98.4 1.7E-07 5.9E-12 95.0 4.1 41 3-43 9-50 (516)
228 3nrn_A Uncharacterized protein 98.3 2.6E-07 8.9E-12 91.1 5.0 40 3-42 1-40 (421)
229 2x8g_A Thioredoxin glutathione 98.3 4.3E-06 1.5E-10 86.3 14.1 105 2-171 286-398 (598)
230 3hdq_A UDP-galactopyranose mut 98.3 3.3E-07 1.1E-11 89.1 5.3 42 2-43 29-70 (397)
231 2bcg_G Secretory pathway GDP d 98.3 3.1E-07 1.1E-11 91.4 5.1 41 3-43 12-52 (453)
232 3ics_A Coenzyme A-disulfide re 98.3 1.7E-06 5.8E-11 89.1 10.3 98 2-170 187-284 (588)
233 3ab1_A Ferredoxin--NADP reduct 98.3 2E-06 6.8E-11 82.8 10.1 103 2-171 163-266 (360)
234 2ywl_A Thioredoxin reductase r 98.3 3.9E-07 1.4E-11 78.5 4.6 131 199-342 3-168 (180)
235 1v0j_A UDP-galactopyranose mut 98.3 4E-07 1.4E-11 89.1 4.9 43 2-44 7-50 (399)
236 1s3e_A Amine oxidase [flavin-c 98.3 4.1E-07 1.4E-11 92.3 4.9 42 2-43 4-45 (520)
237 3d1c_A Flavin-containing putat 98.3 2.2E-06 7.6E-11 82.5 9.8 107 3-170 167-274 (369)
238 2jae_A L-amino acid oxidase; o 98.3 5E-07 1.7E-11 90.9 5.3 41 2-42 11-51 (489)
239 3vrd_B FCCB subunit, flavocyto 98.3 7.8E-07 2.7E-11 87.0 6.2 89 196-284 1-112 (401)
240 4g6h_A Rotenone-insensitive NA 98.2 1.6E-06 5.3E-11 87.4 7.9 100 3-169 218-333 (502)
241 3kd9_A Coenzyme A disulfide re 98.2 2.6E-06 8.9E-11 84.7 9.4 98 3-170 149-246 (449)
242 2yg5_A Putrescine oxidase; oxi 98.2 5.4E-07 1.8E-11 89.7 4.2 41 3-43 6-46 (453)
243 1fl2_A Alkyl hydroperoxide red 98.2 7.8E-06 2.7E-10 76.7 11.7 98 2-170 144-244 (310)
244 2bi7_A UDP-galactopyranose mut 98.2 8.9E-07 3E-11 86.1 5.2 42 2-43 3-44 (384)
245 1sez_A Protoporphyrinogen oxid 98.2 8.2E-07 2.8E-11 89.6 5.0 42 2-43 13-54 (504)
246 3itj_A Thioredoxin reductase 1 98.2 7.4E-06 2.5E-10 77.7 11.3 101 2-171 173-274 (338)
247 1i8t_A UDP-galactopyranose mut 98.2 7.8E-07 2.7E-11 86.0 4.4 42 2-43 1-42 (367)
248 2ivd_A PPO, PPOX, protoporphyr 98.2 8.9E-07 3.1E-11 88.7 4.9 41 2-42 16-56 (478)
249 4dsg_A UDP-galactopyranose mut 98.2 1.1E-06 3.8E-11 88.2 5.5 42 2-43 9-51 (484)
250 2q7v_A Thioredoxin reductase; 98.2 4E-06 1.4E-10 79.4 8.9 100 2-171 152-252 (325)
251 2q0l_A TRXR, thioredoxin reduc 98.2 4.3E-06 1.5E-10 78.5 8.8 101 2-171 143-244 (311)
252 3lov_A Protoporphyrinogen oxid 98.2 1.1E-06 3.7E-11 88.1 4.7 42 2-43 4-47 (475)
253 1vdc_A NTR, NADPH dependent th 98.2 5E-06 1.7E-10 78.9 9.1 101 2-171 159-262 (333)
254 2vvm_A Monoamine oxidase N; FA 98.2 1.3E-06 4.5E-11 87.9 5.2 40 3-42 40-79 (495)
255 3hyw_A Sulfide-quinone reducta 98.2 2.4E-06 8.4E-11 84.4 7.0 86 198-283 3-112 (430)
256 3r9u_A Thioredoxin reductase; 98.2 3.5E-06 1.2E-10 79.1 7.8 101 2-171 147-247 (315)
257 3cty_A Thioredoxin reductase; 98.2 1.3E-05 4.3E-10 75.6 11.7 99 2-171 155-255 (319)
258 3f8d_A Thioredoxin reductase ( 98.1 1.4E-05 4.6E-10 75.3 11.8 99 2-170 154-253 (323)
259 3fbs_A Oxidoreductase; structu 98.1 3.6E-06 1.2E-10 78.3 7.0 88 198-285 3-117 (297)
260 2iid_A L-amino-acid oxidase; f 98.1 1.5E-06 5.3E-11 87.5 4.8 41 2-42 33-73 (498)
261 3sx6_A Sulfide-quinone reducta 98.1 4E-06 1.4E-10 83.0 7.6 88 198-285 5-117 (437)
262 3ihm_A Styrene monooxygenase A 98.1 1.6E-06 5.5E-11 85.7 4.7 35 1-35 21-55 (430)
263 3klj_A NAD(FAD)-dependent dehy 98.1 8.5E-06 2.9E-10 79.2 8.6 88 198-285 10-121 (385)
264 2a87_A TRXR, TR, thioredoxin r 98.1 4E-06 1.4E-10 79.8 6.1 101 2-172 155-256 (335)
265 3lzw_A Ferredoxin--NADP reduct 98.0 2.6E-05 8.8E-10 73.7 11.5 99 2-171 154-253 (332)
266 1d5t_A Guanine nucleotide diss 98.0 3.1E-06 1E-10 83.7 4.9 42 2-43 6-47 (433)
267 3h28_A Sulfide-quinone reducta 98.0 7.9E-06 2.7E-10 80.7 7.3 88 198-285 3-114 (430)
268 3h8l_A NADH oxidase; membrane 98.0 7.2E-06 2.5E-10 80.3 6.7 87 198-285 2-118 (409)
269 2z3y_A Lysine-specific histone 98.0 4.6E-06 1.6E-10 87.0 5.3 42 2-43 107-148 (662)
270 1b37_A Protein (polyamine oxid 98.0 4.4E-06 1.5E-10 83.5 4.9 42 2-43 4-46 (472)
271 1c0p_A D-amino acid oxidase; a 98.0 6.3E-06 2.1E-10 79.4 5.8 34 2-35 6-39 (363)
272 1hyu_A AHPF, alkyl hydroperoxi 98.0 3.6E-05 1.2E-09 77.8 11.3 99 2-171 355-456 (521)
273 2xag_A Lysine-specific histone 98.0 5.5E-06 1.9E-10 88.1 5.4 41 2-42 278-318 (852)
274 3p1w_A Rabgdi protein; GDI RAB 97.9 5.2E-06 1.8E-10 82.4 4.7 41 3-43 21-61 (475)
275 3k30_A Histamine dehydrogenase 97.9 3.1E-05 1.1E-09 81.2 10.6 101 3-170 524-626 (690)
276 3g5s_A Methylenetetrahydrofola 97.9 1.3E-05 4.3E-10 76.6 6.6 39 2-40 1-39 (443)
277 4a5l_A Thioredoxin reductase; 97.9 3.6E-05 1.2E-09 72.2 9.2 34 2-35 152-185 (314)
278 1rp0_A ARA6, thiazole biosynth 97.9 2.8E-05 9.6E-10 72.1 7.9 33 198-230 40-73 (284)
279 3g3e_A D-amino-acid oxidase; F 97.9 7.3E-06 2.5E-10 78.5 3.9 34 3-36 1-40 (351)
280 4fk1_A Putative thioredoxin re 97.8 2.6E-05 8.9E-10 73.0 7.2 87 199-285 8-122 (304)
281 2xve_A Flavin-containing monoo 97.7 9.4E-05 3.2E-09 73.7 9.6 34 2-35 197-230 (464)
282 1lqt_A FPRA; NADP+ derivative, 97.6 0.00016 5.3E-09 71.8 9.8 35 2-36 147-202 (456)
283 1cjc_A Protein (adrenodoxin re 97.6 0.00029 9.8E-09 70.0 11.0 34 2-35 145-199 (460)
284 2vdc_G Glutamate synthase [NAD 97.6 9.7E-05 3.3E-09 73.3 7.6 34 2-35 264-298 (456)
285 3ayj_A Pro-enzyme of L-phenyla 97.6 2.4E-05 8.1E-10 81.2 3.0 35 3-37 57-100 (721)
286 2gag_A Heterotetrameric sarcos 97.6 0.00018 6.2E-09 78.1 10.0 95 3-170 285-385 (965)
287 4gcm_A TRXR, thioredoxin reduc 97.5 7.9E-05 2.7E-09 69.9 5.8 87 199-285 8-121 (312)
288 4a9w_A Monooxygenase; baeyer-v 97.5 9.6E-05 3.3E-09 70.4 6.1 80 198-278 4-130 (357)
289 1ps9_A 2,4-dienoyl-COA reducta 97.5 0.00014 4.8E-09 75.9 7.4 55 106-170 576-630 (671)
290 2gv8_A Monooxygenase; FMO, FAD 97.5 0.00027 9.1E-09 70.0 9.1 34 197-230 6-41 (447)
291 1o94_A Tmadh, trimethylamine d 97.5 0.0002 6.7E-09 75.5 8.5 34 2-35 528-563 (729)
292 4ap3_A Steroid monooxygenase; 97.5 0.00014 4.9E-09 73.8 7.1 87 198-284 22-165 (549)
293 3alj_A 2-methyl-3-hydroxypyrid 97.5 0.00013 4.6E-09 70.4 6.5 35 197-231 11-45 (379)
294 3gwf_A Cyclohexanone monooxyge 97.5 0.00021 7.3E-09 72.4 8.1 87 198-284 9-153 (540)
295 3uox_A Otemo; baeyer-villiger 97.4 0.00012 4.1E-09 74.3 5.9 88 198-285 10-154 (545)
296 4hb9_A Similarities with proba 97.4 0.0004 1.4E-08 67.4 9.0 33 198-230 2-34 (412)
297 3rp8_A Flavoprotein monooxygen 97.4 0.00032 1.1E-08 68.4 8.0 36 196-231 22-57 (407)
298 2vou_A 2,6-dihydroxypyridine h 97.4 0.00042 1.4E-08 67.4 8.6 34 197-230 5-38 (397)
299 1gte_A Dihydropyrimidine dehyd 97.3 0.0011 3.8E-08 72.4 11.6 33 3-35 333-366 (1025)
300 1kdg_A CDH, cellobiose dehydro 97.3 0.00019 6.5E-09 73.0 5.2 35 2-36 7-41 (546)
301 2bry_A NEDD9 interacting prote 97.3 0.0002 6.9E-09 71.9 5.0 87 196-282 91-232 (497)
302 2xdo_A TETX2 protein; tetracyc 97.2 0.0012 4.1E-08 64.1 9.9 34 197-230 26-59 (398)
303 1yvv_A Amine oxidase, flavin-c 97.2 0.00043 1.5E-08 65.4 6.1 33 198-230 3-35 (336)
304 3t37_A Probable dehydrogenase; 97.1 0.00024 8.1E-09 71.9 4.0 35 2-36 17-52 (526)
305 1ju2_A HydroxynitrIle lyase; f 97.1 0.00021 7.3E-09 72.4 3.5 34 3-37 27-60 (536)
306 2x3n_A Probable FAD-dependent 97.1 0.00064 2.2E-08 66.0 6.6 33 198-230 7-39 (399)
307 1vg0_A RAB proteins geranylger 97.1 0.00039 1.3E-08 71.2 5.0 42 2-43 8-49 (650)
308 3nlc_A Uncharacterized protein 97.1 0.00026 9E-09 71.6 3.6 34 197-230 107-140 (549)
309 1w4x_A Phenylacetone monooxyge 97.1 0.00079 2.7E-08 68.4 7.0 82 198-279 17-153 (542)
310 3v76_A Flavoprotein; structura 97.0 0.00033 1.1E-08 68.6 3.6 33 198-230 28-60 (417)
311 3q9t_A Choline dehydrogenase a 97.0 0.00039 1.3E-08 70.9 3.9 35 2-36 6-41 (577)
312 1n4w_A CHOD, cholesterol oxida 97.0 0.00066 2.3E-08 68.2 5.4 37 2-38 5-41 (504)
313 3qj4_A Renalase; FAD/NAD(P)-bi 96.9 0.0017 5.7E-08 61.6 7.7 33 198-230 2-37 (342)
314 3qvp_A Glucose oxidase; oxidor 96.8 0.00066 2.3E-08 69.2 3.9 34 2-35 19-53 (583)
315 1coy_A Cholesterol oxidase; ox 96.8 0.00094 3.2E-08 67.2 4.9 35 2-36 11-45 (507)
316 3nix_A Flavoprotein/dehydrogen 96.7 0.00097 3.3E-08 65.1 4.3 33 198-230 6-38 (421)
317 3fim_B ARYL-alcohol oxidase; A 96.7 0.00067 2.3E-08 69.0 2.8 36 2-37 2-38 (566)
318 2jbv_A Choline oxidase; alcoho 96.7 0.00097 3.3E-08 67.7 4.0 36 2-37 13-49 (546)
319 3ces_A MNMG, tRNA uridine 5-ca 96.6 0.0021 7.2E-08 65.8 5.8 32 198-229 29-60 (651)
320 1gpe_A Protein (glucose oxidas 96.5 0.0017 5.9E-08 66.4 4.9 35 3-37 25-60 (587)
321 3ic5_A Putative saccharopine d 96.5 0.0023 7.8E-08 50.0 4.4 35 1-35 4-39 (118)
322 3dfz_A SIRC, precorrin-2 dehyd 96.5 0.00097 3.3E-08 58.9 2.3 76 194-280 28-103 (223)
323 2gqf_A Hypothetical protein HI 96.5 0.0015 5E-08 63.6 3.8 32 199-230 6-37 (401)
324 2zxi_A TRNA uridine 5-carboxym 96.4 0.0026 9E-08 64.9 5.4 32 198-229 28-59 (637)
325 3llv_A Exopolyphosphatase-rela 96.4 0.0035 1.2E-07 51.0 5.2 34 2-35 6-39 (141)
326 3fwz_A Inner membrane protein 96.4 0.0039 1.4E-07 50.7 5.4 34 2-35 7-40 (140)
327 1k0i_A P-hydroxybenzoate hydro 96.3 0.0027 9.3E-08 61.4 4.7 32 199-230 4-35 (394)
328 3i3l_A Alkylhalidase CMLS; fla 96.3 0.0052 1.8E-07 62.9 6.8 34 197-230 23-56 (591)
329 3cp8_A TRNA uridine 5-carboxym 96.3 0.0035 1.2E-07 64.1 5.5 32 198-229 22-53 (641)
330 2g1u_A Hypothetical protein TM 96.3 0.0044 1.5E-07 51.4 5.2 34 2-35 19-52 (155)
331 2i0z_A NAD(FAD)-utilizing dehy 96.1 0.0035 1.2E-07 61.9 4.1 33 198-230 27-59 (447)
332 3cgv_A Geranylgeranyl reductas 96.1 0.0026 8.8E-08 61.5 3.0 33 198-230 5-37 (397)
333 3fbt_A Chorismate mutase and s 96.1 0.029 1E-06 51.3 9.8 144 195-365 120-274 (282)
334 4b63_A L-ornithine N5 monooxyg 96.1 0.02 6.7E-07 57.4 9.4 34 2-35 246-281 (501)
335 1y56_A Hypothetical protein PH 96.0 0.0032 1.1E-07 63.1 3.5 85 198-285 109-224 (493)
336 3e1t_A Halogenase; flavoprotei 96.0 0.0054 1.9E-07 61.7 5.3 33 198-230 8-40 (512)
337 1lss_A TRK system potassium up 96.0 0.0072 2.5E-07 48.7 5.1 33 3-35 5-37 (140)
338 1id1_A Putative potassium chan 96.0 0.0095 3.3E-07 49.2 5.6 33 2-34 3-35 (153)
339 2hmt_A YUAA protein; RCK, KTN, 95.9 0.0074 2.5E-07 48.9 4.7 34 2-35 6-39 (144)
340 3c96_A Flavin-containing monoo 95.9 0.0079 2.7E-07 58.5 5.5 33 198-230 5-38 (410)
341 2qa2_A CABE, polyketide oxygen 95.9 0.0079 2.7E-07 60.2 5.5 35 197-231 12-46 (499)
342 3atr_A Conserved archaeal prot 95.8 0.005 1.7E-07 60.8 4.0 32 199-230 8-39 (453)
343 2qa1_A PGAE, polyketide oxygen 95.8 0.0071 2.4E-07 60.6 4.8 34 198-231 12-45 (500)
344 3fmw_A Oxygenase; mithramycin, 95.8 0.0053 1.8E-07 62.5 3.9 34 198-231 50-83 (570)
345 3i83_A 2-dehydropantoate 2-red 95.6 0.011 3.6E-07 55.6 5.0 35 1-35 1-35 (320)
346 3hn2_A 2-dehydropantoate 2-red 95.4 0.012 4E-07 55.0 4.5 35 1-35 1-35 (312)
347 2g1u_A Hypothetical protein TM 95.4 0.013 4.3E-07 48.6 4.2 48 184-231 6-53 (155)
348 3c85_A Putative glutathione-re 95.3 0.016 5.4E-07 49.4 4.8 33 3-35 40-73 (183)
349 3gg2_A Sugar dehydrogenase, UD 95.3 0.015 5.1E-07 57.3 5.1 35 1-35 1-35 (450)
350 3dfz_A SIRC, precorrin-2 dehyd 95.3 0.015 5.2E-07 51.2 4.5 33 2-34 31-63 (223)
351 2x5o_A UDP-N-acetylmuramoylala 95.3 0.011 3.9E-07 58.0 4.1 34 2-35 5-38 (439)
352 3lk7_A UDP-N-acetylmuramoylala 95.3 0.015 5.1E-07 57.4 5.0 34 2-35 9-42 (451)
353 3kkj_A Amine oxidase, flavin-c 95.3 0.0078 2.7E-07 54.1 2.7 32 199-230 4-35 (336)
354 3g17_A Similar to 2-dehydropan 95.1 0.015 5.2E-07 53.8 4.3 35 1-35 1-35 (294)
355 3l4b_C TRKA K+ channel protien 95.0 0.02 6.8E-07 50.3 4.6 33 3-35 1-33 (218)
356 1kyq_A Met8P, siroheme biosynt 95.0 0.018 6E-07 52.5 4.1 33 2-34 13-45 (274)
357 4dio_A NAD(P) transhydrogenase 94.9 0.024 8.3E-07 54.4 5.2 34 2-35 190-223 (405)
358 4e12_A Diketoreductase; oxidor 94.9 0.027 9.1E-07 51.8 5.1 34 2-35 4-37 (283)
359 2ew2_A 2-dehydropantoate 2-red 94.8 0.024 8.4E-07 52.7 4.9 34 2-35 3-36 (316)
360 1f0y_A HCDH, L-3-hydroxyacyl-C 94.8 0.028 9.7E-07 52.1 5.2 34 2-35 15-48 (302)
361 4ffl_A PYLC; amino acid, biosy 94.8 0.031 1.1E-06 53.3 5.5 35 2-36 1-35 (363)
362 3ado_A Lambda-crystallin; L-gu 94.7 0.031 1.1E-06 52.1 5.2 33 3-35 7-39 (319)
363 2raf_A Putative dinucleotide-b 94.7 0.035 1.2E-06 48.5 5.1 35 2-36 19-53 (209)
364 2hjr_A Malate dehydrogenase; m 94.7 0.035 1.2E-06 52.2 5.4 34 2-35 14-48 (328)
365 3p2y_A Alanine dehydrogenase/p 94.6 0.026 8.8E-07 53.8 4.4 34 2-35 184-217 (381)
366 1ur5_A Malate dehydrogenase; o 94.6 0.035 1.2E-06 51.7 5.2 35 1-35 1-36 (309)
367 3ego_A Probable 2-dehydropanto 94.6 0.032 1.1E-06 52.0 4.9 34 1-35 1-34 (307)
368 3ius_A Uncharacterized conserv 94.5 0.027 9.2E-07 51.5 4.3 35 1-35 4-38 (286)
369 3lk7_A UDP-N-acetylmuramoylala 94.4 0.015 5.1E-07 57.4 2.4 77 193-285 5-89 (451)
370 1kyq_A Met8P, siroheme biosynt 94.4 0.038 1.3E-06 50.3 4.8 37 194-230 10-46 (274)
371 2dpo_A L-gulonate 3-dehydrogen 94.4 0.041 1.4E-06 51.5 5.2 34 2-35 6-39 (319)
372 4dgk_A Phytoene dehydrogenase; 94.4 0.014 4.7E-07 58.3 2.1 33 198-230 2-34 (501)
373 3vtf_A UDP-glucose 6-dehydroge 94.3 0.035 1.2E-06 54.2 4.6 34 2-35 21-54 (444)
374 1lld_A L-lactate dehydrogenase 94.3 0.042 1.4E-06 51.4 5.0 34 2-35 7-42 (319)
375 2a9f_A Putative malic enzyme ( 94.2 0.035 1.2E-06 52.8 4.4 32 3-34 189-221 (398)
376 3g79_A NDP-N-acetyl-D-galactos 94.2 0.042 1.4E-06 54.3 5.1 35 2-36 18-54 (478)
377 2y0c_A BCEC, UDP-glucose dehyd 94.2 0.041 1.4E-06 54.6 5.1 34 2-35 8-41 (478)
378 3ihm_A Styrene monooxygenase A 94.2 0.023 8E-07 55.6 3.3 34 197-230 22-55 (430)
379 1ks9_A KPA reductase;, 2-dehyd 94.2 0.047 1.6E-06 50.0 5.2 33 3-35 1-33 (291)
380 1pzg_A LDH, lactate dehydrogen 94.2 0.043 1.5E-06 51.6 4.9 33 3-35 10-43 (331)
381 4ezb_A Uncharacterized conserv 94.2 0.038 1.3E-06 51.7 4.5 35 1-35 23-58 (317)
382 1z82_A Glycerol-3-phosphate de 94.1 0.046 1.6E-06 51.5 5.0 35 1-35 13-47 (335)
383 1x13_A NAD(P) transhydrogenase 94.1 0.043 1.5E-06 53.1 4.9 34 2-35 172-205 (401)
384 3doj_A AT3G25530, dehydrogenas 94.1 0.046 1.6E-06 50.9 4.9 34 2-35 21-54 (310)
385 3oj0_A Glutr, glutamyl-tRNA re 94.1 0.019 6.6E-07 46.7 2.1 34 2-35 21-54 (144)
386 3g0o_A 3-hydroxyisobutyrate de 94.1 0.048 1.7E-06 50.6 5.1 34 2-35 7-40 (303)
387 3qha_A Putative oxidoreductase 94.1 0.035 1.2E-06 51.4 4.0 34 2-35 15-48 (296)
388 3dtt_A NADP oxidoreductase; st 94.1 0.055 1.9E-06 48.5 5.2 34 2-35 19-52 (245)
389 3eag_A UDP-N-acetylmuramate:L- 94.0 0.05 1.7E-06 51.0 5.1 34 2-35 4-38 (326)
390 2ewd_A Lactate dehydrogenase,; 94.0 0.049 1.7E-06 50.9 4.9 34 2-35 4-38 (317)
391 1vl6_A Malate oxidoreductase; 94.0 0.048 1.6E-06 51.8 4.8 33 2-34 192-225 (388)
392 3ghy_A Ketopantoate reductase 94.0 0.053 1.8E-06 51.1 5.1 33 2-34 3-35 (335)
393 4gbj_A 6-phosphogluconate dehy 93.9 0.041 1.4E-06 50.9 4.1 35 1-35 4-38 (297)
394 1l7d_A Nicotinamide nucleotide 93.9 0.058 2E-06 51.9 5.3 34 2-35 172-205 (384)
395 3k96_A Glycerol-3-phosphate de 93.8 0.056 1.9E-06 51.4 5.0 34 2-35 29-62 (356)
396 3gt0_A Pyrroline-5-carboxylate 93.8 0.065 2.2E-06 48.0 5.1 35 1-35 1-39 (247)
397 1pjc_A Protein (L-alanine dehy 93.8 0.065 2.2E-06 51.1 5.4 34 2-35 167-200 (361)
398 3pdu_A 3-hydroxyisobutyrate de 93.8 0.043 1.5E-06 50.4 4.0 34 2-35 1-34 (287)
399 2h78_A Hibadh, 3-hydroxyisobut 93.7 0.053 1.8E-06 50.2 4.6 34 2-35 3-36 (302)
400 4huj_A Uncharacterized protein 93.6 0.036 1.2E-06 48.8 3.1 34 2-35 23-57 (220)
401 1yj8_A Glycerol-3-phosphate de 93.6 0.048 1.6E-06 52.3 4.2 36 1-36 20-62 (375)
402 3pef_A 6-phosphogluconate dehy 93.6 0.064 2.2E-06 49.3 4.8 34 2-35 1-34 (287)
403 2vns_A Metalloreductase steap3 93.5 0.076 2.6E-06 46.5 5.0 34 2-35 28-61 (215)
404 1vpd_A Tartronate semialdehyde 93.5 0.059 2E-06 49.7 4.5 35 1-35 4-38 (299)
405 1bg6_A N-(1-D-carboxylethyl)-L 93.5 0.069 2.4E-06 50.6 5.1 33 3-35 5-37 (359)
406 1jw9_B Molybdopterin biosynthe 93.5 0.063 2.2E-06 48.2 4.5 32 3-34 32-64 (249)
407 2vvm_A Monoamine oxidase N; FA 93.5 0.1 3.5E-06 51.9 6.5 57 103-166 255-312 (495)
408 3c24_A Putative oxidoreductase 93.5 0.076 2.6E-06 48.7 5.2 34 2-35 11-45 (286)
409 1zej_A HBD-9, 3-hydroxyacyl-CO 93.4 0.07 2.4E-06 49.1 4.7 33 2-35 12-44 (293)
410 3k6j_A Protein F01G10.3, confi 93.4 0.078 2.7E-06 52.0 5.2 35 2-36 54-88 (460)
411 4dll_A 2-hydroxy-3-oxopropiona 93.4 0.071 2.4E-06 49.8 4.8 34 2-35 31-64 (320)
412 3pid_A UDP-glucose 6-dehydroge 93.3 0.069 2.4E-06 51.9 4.8 33 2-35 36-68 (432)
413 2pv7_A T-protein [includes: ch 93.3 0.077 2.6E-06 49.1 4.9 34 2-35 21-55 (298)
414 3gpi_A NAD-dependent epimerase 93.3 0.099 3.4E-06 47.7 5.6 34 2-35 3-36 (286)
415 3oz2_A Digeranylgeranylglycero 93.3 0.039 1.3E-06 52.8 2.9 32 199-230 6-37 (397)
416 4a7p_A UDP-glucose dehydrogena 93.3 0.076 2.6E-06 52.0 5.0 35 3-37 9-43 (446)
417 3phh_A Shikimate dehydrogenase 93.3 0.097 3.3E-06 47.5 5.3 34 2-35 118-151 (269)
418 1t2d_A LDH-P, L-lactate dehydr 93.2 0.089 3E-06 49.2 5.2 34 2-35 4-38 (322)
419 3hwr_A 2-dehydropantoate 2-red 93.2 0.083 2.8E-06 49.4 5.0 32 2-34 19-50 (318)
420 2v6b_A L-LDH, L-lactate dehydr 93.2 0.081 2.8E-06 49.1 4.9 33 3-35 1-35 (304)
421 2eez_A Alanine dehydrogenase; 93.1 0.096 3.3E-06 50.1 5.4 34 2-35 166-199 (369)
422 3l6d_A Putative oxidoreductase 93.1 0.091 3.1E-06 48.8 5.1 34 2-35 9-42 (306)
423 1zcj_A Peroxisomal bifunctiona 93.1 0.08 2.8E-06 52.3 4.9 34 2-35 37-70 (463)
424 3r6d_A NAD-dependent epimerase 93.0 0.11 3.8E-06 45.3 5.3 35 1-35 4-40 (221)
425 1mv8_A GMD, GDP-mannose 6-dehy 93.0 0.074 2.5E-06 52.1 4.5 33 3-35 1-33 (436)
426 2vhw_A Alanine dehydrogenase; 93.0 0.1 3.5E-06 50.0 5.4 34 2-35 168-201 (377)
427 2o3j_A UDP-glucose 6-dehydroge 93.0 0.069 2.4E-06 53.0 4.3 34 2-35 9-44 (481)
428 3ggo_A Prephenate dehydrogenas 93.0 0.1 3.5E-06 48.7 5.2 34 2-35 33-68 (314)
429 1nyt_A Shikimate 5-dehydrogena 93.0 0.1 3.5E-06 47.5 5.1 34 2-35 119-152 (271)
430 3c7a_A Octopine dehydrogenase; 92.8 0.054 1.8E-06 52.5 3.1 32 1-32 1-33 (404)
431 2p4q_A 6-phosphogluconate dehy 92.8 0.1 3.6E-06 51.9 5.2 35 1-35 9-43 (497)
432 3g5s_A Methylenetetrahydrofola 92.8 0.051 1.7E-06 52.0 2.8 33 198-230 2-34 (443)
433 2x5o_A UDP-N-acetylmuramoylala 92.7 0.056 1.9E-06 53.0 3.2 77 195-286 3-82 (439)
434 3nrn_A Uncharacterized protein 92.7 0.063 2.2E-06 52.2 3.5 34 198-231 1-34 (421)
435 3gvi_A Malate dehydrogenase; N 92.7 0.13 4.3E-06 48.2 5.4 34 2-35 7-41 (324)
436 2g5c_A Prephenate dehydrogenas 92.7 0.12 4E-06 47.2 5.1 34 2-35 1-36 (281)
437 1pjq_A CYSG, siroheme synthase 92.7 0.097 3.3E-06 51.6 4.8 33 2-34 12-44 (457)
438 2egg_A AROE, shikimate 5-dehyd 92.6 0.11 3.7E-06 48.0 4.8 34 2-35 141-175 (297)
439 1hyh_A L-hicdh, L-2-hydroxyiso 92.6 0.099 3.4E-06 48.6 4.5 33 3-35 2-36 (309)
440 1hdo_A Biliverdin IX beta redu 92.6 0.14 4.7E-06 43.9 5.2 33 3-35 4-37 (206)
441 3c4a_A Probable tryptophan hyd 92.6 0.064 2.2E-06 51.4 3.3 34 198-231 1-36 (381)
442 1y6j_A L-lactate dehydrogenase 92.6 0.11 3.9E-06 48.4 4.9 34 2-35 7-42 (318)
443 1ryi_A Glycine oxidase; flavop 92.6 0.053 1.8E-06 51.8 2.7 33 198-230 18-50 (382)
444 3vps_A TUNA, NAD-dependent epi 92.5 0.14 4.7E-06 47.4 5.5 34 2-35 7-41 (321)
445 3l9w_A Glutathione-regulated p 92.5 0.12 4.1E-06 50.1 5.2 35 2-36 4-38 (413)
446 3e8x_A Putative NAD-dependent 92.5 0.12 4.3E-06 45.6 5.0 34 2-35 21-55 (236)
447 3ka7_A Oxidoreductase; structu 92.5 0.07 2.4E-06 51.8 3.5 34 198-231 1-34 (425)
448 1evy_A Glycerol-3-phosphate de 92.5 0.061 2.1E-06 51.3 3.0 32 4-35 17-48 (366)
449 1guz_A Malate dehydrogenase; o 92.5 0.13 4.3E-06 47.9 5.0 33 3-35 1-35 (310)
450 4g65_A TRK system potassium up 92.4 0.054 1.8E-06 53.4 2.6 34 2-35 3-36 (461)
451 2cvz_A Dehydrogenase, 3-hydrox 92.4 0.096 3.3E-06 48.0 4.1 32 3-35 2-33 (289)
452 3m2p_A UDP-N-acetylglucosamine 92.4 0.14 4.6E-06 47.4 5.2 34 1-34 1-35 (311)
453 3tl2_A Malate dehydrogenase; c 92.4 0.13 4.4E-06 47.9 4.9 32 3-34 9-41 (315)
454 4e21_A 6-phosphogluconate dehy 92.3 0.13 4.5E-06 48.8 5.1 34 2-35 22-55 (358)
455 3qsg_A NAD-binding phosphogluc 92.3 0.11 3.6E-06 48.5 4.4 33 2-34 24-57 (312)
456 2oln_A NIKD protein; flavoprot 92.3 0.074 2.5E-06 51.2 3.4 33 198-230 5-37 (397)
457 3mog_A Probable 3-hydroxybutyr 92.3 0.13 4.6E-06 50.8 5.2 33 3-35 6-38 (483)
458 2qyt_A 2-dehydropantoate 2-red 92.2 0.089 3E-06 48.9 3.8 32 2-33 8-45 (317)
459 1p77_A Shikimate 5-dehydrogena 92.2 0.11 3.7E-06 47.3 4.2 34 2-35 119-152 (272)
460 2iid_A L-amino-acid oxidase; f 92.2 0.077 2.6E-06 52.8 3.5 34 197-230 33-66 (498)
461 1jay_A Coenzyme F420H2:NADP+ o 92.2 0.13 4.6E-06 44.6 4.7 33 3-35 1-34 (212)
462 2i6t_A Ubiquitin-conjugating e 92.1 0.13 4.4E-06 47.6 4.7 34 2-35 14-49 (303)
463 1txg_A Glycerol-3-phosphate de 92.1 0.11 3.9E-06 48.6 4.4 31 3-33 1-31 (335)
464 3ew7_A LMO0794 protein; Q8Y8U8 92.1 0.16 5.5E-06 44.1 5.1 33 3-35 1-34 (221)
465 2rir_A Dipicolinate synthase, 92.1 0.16 5.6E-06 46.9 5.3 34 2-35 157-190 (300)
466 1dlj_A UDP-glucose dehydrogena 92.0 0.1 3.4E-06 50.6 3.9 32 3-35 1-32 (402)
467 2uyy_A N-PAC protein; long-cha 92.0 0.14 4.8E-06 47.6 4.8 33 3-35 31-63 (316)
468 3d4o_A Dipicolinate synthase s 92.0 0.17 5.7E-06 46.6 5.3 34 2-35 155-188 (293)
469 2q3e_A UDP-glucose 6-dehydroge 92.0 0.11 3.8E-06 51.3 4.3 34 2-35 5-40 (467)
470 1a5z_A L-lactate dehydrogenase 92.0 0.13 4.3E-06 48.1 4.4 33 3-35 1-35 (319)
471 3dme_A Conserved exported prot 91.9 0.076 2.6E-06 50.2 2.9 33 198-230 5-37 (369)
472 3p7m_A Malate dehydrogenase; p 91.9 0.18 6.2E-06 47.0 5.4 34 2-35 5-39 (321)
473 3dhn_A NAD-dependent epimerase 91.8 0.13 4.5E-06 45.0 4.2 34 2-35 4-38 (227)
474 2e1m_A L-glutamate oxidase; L- 91.8 0.11 3.7E-06 49.8 3.8 34 196-229 43-76 (376)
475 3ic5_A Putative saccharopine d 91.8 0.13 4.4E-06 39.7 3.6 36 196-231 4-40 (118)
476 1c0p_A D-amino acid oxidase; a 91.8 0.11 3.7E-06 49.3 3.8 32 198-229 7-38 (363)
477 3nks_A Protoporphyrinogen oxid 91.7 0.1 3.6E-06 51.4 3.8 33 198-230 3-37 (477)
478 2ydy_A Methionine adenosyltran 91.7 0.15 5E-06 47.2 4.6 35 1-35 1-36 (315)
479 3tri_A Pyrroline-5-carboxylate 91.7 0.19 6.6E-06 45.9 5.3 34 2-35 3-39 (280)
480 1id1_A Putative potassium chan 91.7 0.13 4.3E-06 42.2 3.7 35 196-230 2-36 (153)
481 3rui_A Ubiquitin-like modifier 91.7 0.18 6.3E-06 47.1 5.1 33 2-34 34-67 (340)
482 2gf3_A MSOX, monomeric sarcosi 91.7 0.084 2.9E-06 50.5 2.9 33 198-230 4-36 (389)
483 4gwg_A 6-phosphogluconate dehy 91.6 0.18 6E-06 49.9 5.2 34 2-35 4-37 (484)
484 2f1k_A Prephenate dehydrogenas 91.6 0.18 6.1E-06 45.9 4.9 33 3-35 1-33 (279)
485 3tnl_A Shikimate dehydrogenase 91.6 0.21 7.1E-06 46.4 5.3 33 2-34 154-187 (315)
486 3h2s_A Putative NADH-flavin re 91.5 0.2 6.8E-06 43.6 5.0 32 4-35 2-34 (224)
487 2uzz_A N-methyl-L-tryptophan o 91.5 0.068 2.3E-06 50.8 2.1 33 198-230 3-35 (372)
488 3don_A Shikimate dehydrogenase 91.5 0.15 5.1E-06 46.5 4.2 34 2-35 117-151 (277)
489 1ek6_A UDP-galactose 4-epimera 91.5 0.23 7.9E-06 46.6 5.8 34 1-34 1-35 (348)
490 4b4o_A Epimerase family protei 91.4 0.22 7.7E-06 45.6 5.5 36 3-38 1-37 (298)
491 3cky_A 2-hydroxymethyl glutara 91.4 0.17 5.7E-06 46.7 4.6 34 2-35 4-37 (301)
492 2rcy_A Pyrroline carboxylate r 91.4 0.17 5.8E-06 45.5 4.6 34 2-35 4-41 (262)
493 3pqe_A L-LDH, L-lactate dehydr 91.4 0.18 6E-06 47.2 4.7 34 2-35 5-40 (326)
494 2ivd_A PPO, PPOX, protoporphyr 91.4 0.092 3.1E-06 51.9 3.0 34 197-230 16-49 (478)
495 2r6j_A Eugenol synthase 1; phe 91.4 0.2 6.7E-06 46.5 5.1 34 2-35 11-45 (318)
496 2hk9_A Shikimate dehydrogenase 91.4 0.17 5.7E-06 46.2 4.5 34 2-35 129-162 (275)
497 3q2o_A Phosphoribosylaminoimid 91.4 0.22 7.5E-06 47.8 5.5 34 2-35 14-47 (389)
498 2gf2_A Hibadh, 3-hydroxyisobut 91.4 0.17 5.8E-06 46.5 4.6 33 3-35 1-33 (296)
499 3jyo_A Quinate/shikimate dehyd 91.3 0.22 7.5E-06 45.6 5.2 34 2-35 127-161 (283)
500 3fbt_A Chorismate mutase and s 91.3 0.2 6.9E-06 45.7 4.9 34 2-35 122-156 (282)
No 1
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=100.00 E-value=2e-64 Score=508.31 Aligned_cols=402 Identities=27% Similarity=0.442 Sum_probs=342.2
Q ss_pred CCCeEEEECcChHHHHHHHHHHH---CCCc---EEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLR---EGHT---VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLP 74 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~---~g~~---v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~ 74 (446)
|.+||+|||||++||++|+.|++ .|++ |+|||+++.+||.|.+....+.++.| ...++.+|+.+++|.+
T Consensus 1 M~~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g-----~~~~~~~y~~l~~~~~ 75 (464)
T 2xve_A 1 MATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENG-----EPVHSSMYRYLWSNGP 75 (464)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTS-----SBCCCCCCTTCBCSSC
T ss_pred CCCcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccC-----CCCcCccccchhhcCC
Confidence 56899999999999999999999 9999 99999999999999987544333333 2346789999999999
Q ss_pred CCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC-CceEEEEEeCC-CceEE
Q 013303 75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKD-DVVEE 152 (446)
Q Consensus 75 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~-~~~~v~~~~~~-~~~~~ 152 (446)
+..++|++||++... ..+.+.|+++.++.+|+.++++++++..+++++++|+.|++.++ +.|+|++.++. +...+
T Consensus 76 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~ 152 (464)
T 2xve_A 76 KECLEFADYTFDEHF---GKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYS 152 (464)
T ss_dssp GGGTCBTTBCHHHHH---SSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred hhhcccCCCCCCccc---CCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEE
Confidence 999999999886531 12246789999999999999999999888999999999998762 37999998742 33457
Q ss_pred EEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc
Q 013303 153 ETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD 232 (446)
Q Consensus 153 ~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~ 232 (446)
+.||+||+|||+++.|++|.+||++.|.|.++|++.|+++..+.+|+|+|||+|.||+|+|.+|++.+++|+++.+++..
T Consensus 153 ~~~d~VVvAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~ 232 (464)
T 2xve_A 153 EEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAP 232 (464)
T ss_dssp EEESEEEECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCC
T ss_pred EEcCEEEECCCCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCC
Confidence 89999999999999999999999999999999999999988889999999999999999999999999999999987641
Q ss_pred cccccCCCCCCeeeccceeEEccCCcEEecCCcEEeecEEEEecCccCCCCCCCCCCeeeeCCC-CcccccccccCCCCC
Q 013303 233 ETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDN-RVGPLYKHVFPPVLA 311 (446)
Q Consensus 233 ~~~~~~~~~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~g~i~~~~~-~~~~l~~~~~~~~~~ 311 (446)
+.. .-..++.+.+.|+++.++ .|+|+||+++++|.||+||||+|++|||++...+.++++ .+.++|+++++++ .
T Consensus 233 --~~~-~~~~~V~~~~~V~~i~~~-~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~v~~~~~~~~~t~-~ 307 (464)
T 2xve_A 233 --MGY-KWPENWDERPNLVRVDTE-NAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVWED-N 307 (464)
T ss_dssp --CCC-CCCTTEEECSCEEEECSS-EEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSCCSSEETTTEESS-S
T ss_pred --CCC-CCCCceEEcCCeEEEeCC-EEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCCCcccccccceEecCC-C
Confidence 111 012467777899999764 599999999999999999999999999986433666666 4457999999977 9
Q ss_pred CCeEEecCCCccCchhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHcCC--CCcceeecCCcchhHHHHHHH
Q 013303 312 PGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGK--PKRYTHIMDYPQLIEYTDWLA 389 (446)
Q Consensus 312 p~l~~iG~~~~~~~~~~~~~qa~~~a~~l~g~~~lp~~~~m~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~y~~~l~ 389 (446)
|+|||+|++..+..+++++.||+|+|++|+|+..||+.++|++++.++.+. ..+. +.|++|. +++|+|+|+
T Consensus 308 p~i~aiGd~~~~~~~~~a~~qa~~~a~~l~G~~~lP~~~~m~~~~~~~~~~--~~~~~~~~~~~~~-----~~~Y~~~l~ 380 (464)
T 2xve_A 308 PKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREK--ELTLVTAEEMYTY-----QGDYIQNLI 380 (464)
T ss_dssp TTEEECSCSCCSSCHHHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHHHH--HHTCCSHHHHHHH-----HHHHHHHHH
T ss_pred CCEEEEeCcccccchHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHH--hhccCCCCCcccc-----HHHHHHHHH
Confidence 999999999888889999999999999999999999999999999887663 4443 3455553 689999999
Q ss_pred HHCCCCCc-hHHHHHHHHHHHhhhcccCCcccCCc
Q 013303 390 AQCNCQGY-EEWRKQMAYSAFKNAFITRPGTYRDE 423 (446)
Q Consensus 390 ~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~yr~~ 423 (446)
+++|++++ ++|++++|..+.+.+. .++++||+.
T Consensus 381 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~ 414 (464)
T 2xve_A 381 DMTDYPSFDIPATNKTFLEWKHHKK-ENIMTFRDH 414 (464)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHH-HCTTTGGGC
T ss_pred HHcCCCCCChHHHHHHHHHHHHHHH-hchhhhccc
Confidence 99999988 7889999999999988 999999976
No 2
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=100.00 E-value=2.8e-56 Score=447.90 Aligned_cols=372 Identities=31% Similarity=0.582 Sum_probs=310.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCCCcCceeeeCCCCCCCCCCCCCC-------C--------CCccCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPN-------R--------YPVHSS 64 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~-------~--------~~~~~~ 64 (446)
.+||+|||||++||++|..|++.|. +|+|||+.+.+||.|.+....... .. .|. . ....+.
T Consensus 6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~-~~-ip~~~~~~~~~~~~~g~~~~~~~~~ 83 (447)
T 2gv8_A 6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNK-LP-VPSTNPILTTEPIVGPAALPVYPSP 83 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSC-CC-SSBCCTTCCCCCBCCSSSCCBCCCC
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcc-cc-cccccccccccccccccccCCccCc
Confidence 4799999999999999999999999 999999999999999986432100 00 110 0 111367
Q ss_pred ccCceeecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEE
Q 013303 65 LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR 144 (446)
Q Consensus 65 ~y~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~ 144 (446)
+|+.+.+|.++..+.|+++|++.. ...|+++.++.+|+.+++++++.. ++++++|++|+..+ +.|+|++.
T Consensus 84 ~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~~~--i~~~t~V~~v~~~~-~~~~V~~~ 153 (447)
T 2gv8_A 84 LYRDLQTNTPIELMGYCDQSFKPQ-------TLQFPHRHTIQEYQRIYAQPLLPF--IKLATDVLDIEKKD-GSWVVTYK 153 (447)
T ss_dssp CCTTCBCSSCHHHHSCTTCCCCTT-------CCSSCBHHHHHHHHHHHHGGGGGG--EECSEEEEEEEEET-TEEEEEEE
T ss_pred hhhhhccCCCHHHhccCCCCCCCC-------CCCCCCHHHHHHHHHHHHHHhhCe--EEeCCEEEEEEeCC-CeEEEEEe
Confidence 899999999999999999998765 578899999999999999998654 99999999998876 78999988
Q ss_pred eC-CCc-eEEEEEcEEEEccCCCCCCccCCCCCCCCC----CccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhc
Q 013303 145 KK-DDV-VEEETFDAVVVCNGHFSVPRLAQVPGIDSW----PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAG 218 (446)
Q Consensus 145 ~~-~~~-~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~----~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~ 218 (446)
+. ++. ..++.||+||+|||+++.|++|.+||++.| +|.++|++.|+++..+.+|+|+|||+|.||+|+|.+|++
T Consensus 154 ~~~~G~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~~ 233 (447)
T 2gv8_A 154 GTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTP 233 (447)
T ss_dssp ESSTTCCEEEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTT
T ss_pred ecCCCCeeEEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccCcCHHHHHHHHHH
Confidence 73 233 347899999999999999999999998754 678999999999988999999999999999999999999
Q ss_pred cCCE-EEEEEecCCccccccCCCCCCeeeccceeEEccC-CcEEecCCcE-EeecEEEEecCccCCCCC-----CCC-CC
Q 013303 219 FAKE-VHIASRSVADETHEKQPGYDNMWLHSMVERANED-GTVVFRNGRV-VSADVIMHCTGYKYNYPF-----LET-NG 289 (446)
Q Consensus 219 ~~~~-V~l~~r~~~~~~~~~~~~~~~v~~~~~v~~i~~~-~~v~~~dG~~-~~~D~vi~atG~~~~~~~-----l~~-~g 289 (446)
.+++ |+++.|++.. ....++...+.|+++..+ +.|+|+||++ +++|.||+||||+|++|| |++ .+
T Consensus 234 ~~~~~V~l~~r~~~~------l~~~~i~~~~~v~~~~~~~~~v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~~l~~~~~ 307 (447)
T 2gv8_A 234 VAKHPIYQSLLGGGD------IQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPET 307 (447)
T ss_dssp TSCSSEEEECTTCCS------CBCSSEEEECCEEEEETTTTEEEETTTEEECCCSEEEECCCBCCCCCCHHHHSCCSTTT
T ss_pred HhCCcEEEEeCCCCc------CCCCCeEEecCeEEEecCCCEEEECCCCEeccCCEEEECCCCCcCCCCCcccccccccC
Confidence 9999 9999998642 234567788999999633 4599999987 689999999999999999 875 34
Q ss_pred eeeeCCCCcccccccccCCCCCCCeEEecCCCccCchhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHcCCC
Q 013303 290 IVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKP 369 (446)
Q Consensus 290 ~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~~~~~~~qa~~~a~~l~g~~~lp~~~~m~~~~~~~~~~~~~~~~~ 369 (446)
.+.+|++...++|+++|++. +|+|||+|++.....+++++.||+|+|++|+|+..||+.++|++++.+..+.+ .+..
T Consensus 308 ~i~~~~~~~~~~~~~v~~~~-~p~l~~~G~~~~~~~~~~a~~qa~~~a~~~~g~~~lp~~~~m~~~~~~~~~~~--~~~~ 384 (447)
T 2gv8_A 308 KLIDDGSHVHNVYQHIFYIP-DPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELMFSL--SGAN 384 (447)
T ss_dssp CCCSSSSSCCSEETTTEETT-CTTEEESSCCBSSCHHHHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHHHHH--TTCG
T ss_pred ceecCCCcccccccccccCC-CCcEEEEeccccccCchHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHHh--cCCC
Confidence 46677777778999999876 99999999988777889999999999999999999999999999888654332 3444
Q ss_pred CcceeecCCcchhHHHHHHHHHCCCC
Q 013303 370 KRYTHIMDYPQLIEYTDWLAAQCNCQ 395 (446)
Q Consensus 370 ~~~~~~~~~~~~~~y~~~l~~~~g~~ 395 (446)
.++ |.+..+.+++|+++|++++|..
T Consensus 385 ~~~-~~~~~~~~~~y~~~l~~~~~~~ 409 (447)
T 2gv8_A 385 NMY-HSLDYPKDATYINKLHDWCKQA 409 (447)
T ss_dssp GGT-TBCTTTHHHHHHHHHHHHHHTC
T ss_pred cce-eecCCccHHHHHHHHHHHhCcc
Confidence 444 8776346899999999998753
No 3
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=100.00 E-value=7.3e-41 Score=325.45 Aligned_cols=302 Identities=21% Similarity=0.326 Sum_probs=238.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
++||+|||||++|+++|..|++.|++|+|||+.+.+||.|.+ .|+.+..+.+...+.++
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~---------------------~~~~~~~~~~~~~~~~~ 61 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH---------------------AWHSLHLFSPAGWSSIP 61 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGG---------------------SCTTCBCSSCGGGSCCS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccC---------------------CCCCcEecCchhhhhCC
Confidence 469999999999999999999999999999999999999986 25555666666677777
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEeCCCceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~~~~~~~~~~~d~VVv 160 (446)
.++++.. ...|+++.++.+|+.++++++++. ++++++|+++++.+ +.|. |++.++ ++.||+||+
T Consensus 62 ~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~v~~i~~~~-~~~~~v~~~~g-----~~~~d~vV~ 126 (357)
T 4a9w_A 62 GWPMPAS-------QGPYPARAEVLAYLAQYEQKYALP--VLRPIRVQRVSHFG-ERLRVVARDGR-----QWLARAVIS 126 (357)
T ss_dssp SSCCCCC-------SSSSCBHHHHHHHHHHHHHHTTCC--EECSCCEEEEEEET-TEEEEEETTSC-----EEEEEEEEE
T ss_pred CCCCCCC-------ccCCCCHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEECC-CcEEEEEeCCC-----EEEeCEEEE
Confidence 7776543 567889999999999999999998 99999999999876 7788 765442 799999999
Q ss_pred ccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC---ccc---
Q 013303 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---DET--- 234 (446)
Q Consensus 161 AtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~---~~~--- 234 (446)
|||.++.|++|.+||.+.+.+..+|+..+.....+.+++|+|||+|.+|+|+|..|++.+ +|+++.++.. ...
T Consensus 127 AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~ 205 (357)
T 4a9w_A 127 ATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDG 205 (357)
T ss_dssp CCCSGGGBCCCCCTTGGGCCSEEEEGGGCCCSGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCT
T ss_pred CCCCCCCCCCCCCCCccccCCcEEEeccCCChhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcC
Confidence 999988999999999998999999999999888889999999999999999999999998 6999998743 000
Q ss_pred -------cccCC----------------------------CCCCeeeccceeEEccCCcEEecCCcEEeecEEEEecCcc
Q 013303 235 -------HEKQP----------------------------GYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYK 279 (446)
Q Consensus 235 -------~~~~~----------------------------~~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~ 279 (446)
.+.+. +.+.+...+.+.++..++ +.+.||+++++|.||+|||++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~v~~~~~~~-v~~~~g~~i~~D~vi~a~G~~ 284 (357)
T 4a9w_A 206 RVLFERATERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTG-MQWADGTERAFDAVIWCTGFR 284 (357)
T ss_dssp HHHHTC----------------------CBCCCHHHHHHHHTTCCCEECCCSEEETTE-EECTTSCEEECSEEEECCCBC
T ss_pred ccHHHHHHHHHhccccccCCCcccccccCcccChhHHHHHhcCceEEecCcceEeCCe-eEECCCCEecCCEEEECCCcC
Confidence 01111 112344556677776544 999999999999999999999
Q ss_pred CCCCCCCCCCeeeeCCCCccccccc-ccCCCCCCCeEEecC--CCc--cCchhHHHHHHHHHHHHHcCCC
Q 013303 280 YNYPFLETNGIVTVDDNRVGPLYKH-VFPPVLAPGLSFVGI--PQK--VIPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 280 ~~~~~l~~~g~i~~~~~~~~~l~~~-~~~~~~~p~l~~iG~--~~~--~~~~~~~~~qa~~~a~~l~g~~ 344 (446)
|+++++...+ +. +++.......+ .+. ++.|+||++|+ +.. ......+..||+.+|+++...+
T Consensus 285 p~~~~l~~~g-l~-~~~G~i~vd~~~l~~-t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~~l 351 (357)
T 4a9w_A 285 PALSHLKGLD-LV-TPQGQVEVDGSGLRA-LAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTAYC 351 (357)
T ss_dssp CCCGGGTTTT-CB-CTTSCBCBCTTSCBB-SSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHHHT
T ss_pred CCCcccCccc-cc-CCCCCccccCCcccC-CCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 9999986644 22 22222122222 123 45899999994 432 3445678889999988876544
No 4
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=100.00 E-value=3.2e-40 Score=336.82 Aligned_cols=309 Identities=23% Similarity=0.353 Sum_probs=238.9
Q ss_pred CeEEEECcChHHHHHHHHHH-HCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 3 RHVAVIGAGAAGLVVGHELL-REGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~-~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
+||+|||||++|+++|..|+ +.|++|+|||+++.+||+|... .|+....+.|...+.++
T Consensus 9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~--------------------~ypg~~~d~~s~~~~~~ 68 (540)
T 3gwf_A 9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWN--------------------RYPGALSDTESHLYRFS 68 (540)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHC--------------------CCTTCEEEEEGGGSSCC
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCccccc--------------------CCCCceecCCcceeeec
Confidence 58999999999999999999 8999999999999999999864 24444444444444433
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC-CceEEEEEeCCCceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~-~~~~v~~~~~~~~~~~~~~d~VVv 160 (446)
+.............|+++.++.+|+.++++++++...++++++|++++..++ +.|+|++.++. ++.||+||+
T Consensus 69 ---~~~~~~~~~~~~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~----~i~ad~lV~ 141 (540)
T 3gwf_A 69 ---FDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGE----VYRAKYVVN 141 (540)
T ss_dssp ---SCHHHHHHCCCSBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSC----EEEEEEEEE
T ss_pred ---cccccccCCCCcccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCC----EEEeCEEEE
Confidence 1100000001234678899999999999999999767999999999998763 47999887654 789999999
Q ss_pred ccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC------c--
Q 013303 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA------D-- 232 (446)
Q Consensus 161 AtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~------~-- 232 (446)
|||.++.|+.|++||++.|.|..+|+..+.....+.+|+|+|||+|.||+|+|..|++.+++|+++.|++. +
T Consensus 142 AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~ 221 (540)
T 3gwf_A 142 AVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRP 221 (540)
T ss_dssp CCCSCCSBCCCCCTTGGGCCSEEEEGGGCCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCB
T ss_pred CCcccccCCCCCCCCccccCCCEEEeecCCCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCC
Confidence 99999999999999999999999999998888788999999999999999999999999999999999875 0
Q ss_pred ------cccccC--------------------------------------------------------------------
Q 013303 233 ------ETHEKQ-------------------------------------------------------------------- 238 (446)
Q Consensus 233 ------~~~~~~-------------------------------------------------------------------- 238 (446)
..+++.
T Consensus 222 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 301 (540)
T 3gwf_A 222 VNPEQIAEIKADYDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAAS 301 (540)
T ss_dssp CCHHHHHHHHHTHHHHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHH
T ss_pred CCHHHHHHHHhccHHHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHH
Confidence 001100
Q ss_pred --------------------------------------CCCCCeee----ccceeEEccCCcEEecCCcEEeecEEEEec
Q 013303 239 --------------------------------------PGYDNMWL----HSMVERANEDGTVVFRNGRVVSADVIMHCT 276 (446)
Q Consensus 239 --------------------------------------~~~~~v~~----~~~v~~i~~~~~v~~~dG~~~~~D~vi~at 276 (446)
....++.+ ...|++|++++ |+++||+++++|+||+||
T Consensus 302 ~~~~~~~~~v~dp~~~~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~g-v~~~dG~~~~~DvIV~AT 380 (540)
T 3gwf_A 302 FIRAKVAEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAKG-VVTEDGVLHELDVLVFAT 380 (540)
T ss_dssp HHHHHHHHHCCSHHHHHHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSSE-EEETTCCEEECSEEEECC
T ss_pred HHHHHHHHHcCCHHHHHhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecCe-EEcCCCCEEECCEEEECC
Confidence 00224444 36788898766 999999999999999999
Q ss_pred CccCCCCCCC------CCCeeeeCC-CC-cccccccccCCCCCCCeEEe-cCCC-ccCchhHHHHHHHHHHHHHc
Q 013303 277 GYKYNYPFLE------TNGIVTVDD-NR-VGPLYKHVFPPVLAPGLSFV-GIPQ-KVIPFPFFELQSKWIASVLS 341 (446)
Q Consensus 277 G~~~~~~~l~------~~g~i~~~~-~~-~~~l~~~~~~~~~~p~l~~i-G~~~-~~~~~~~~~~qa~~~a~~l~ 341 (446)
||.++..++. .+| +.+++ .. ....|..+..+. .||+|++ |... ......++|.|++|+++.|.
T Consensus 381 Gf~~~~~~~~~~~i~g~~G-~~l~~~w~~~~~~y~g~~v~g-fPN~f~~~Gp~~~~~s~~~~~e~q~~~i~~~i~ 453 (540)
T 3gwf_A 381 GFDAVDGNYRRIEIRGRDG-LHINDHWDGQPTSYLGVSTAN-FPNWFMVLGPNGPFTNLPPSIETQVEWISDTIG 453 (540)
T ss_dssp CBSCSSHHHHTSEEECGGG-CBHHHHTSSSCCCBTTTBCTT-CTTEEESSCSSCBCSCHHHHHHHHHHHHHHHHH
T ss_pred ccCccccCcCcceEECCCC-cCHHHhhccChhhccccccCC-CCceEEEecCCCCCccHHHHHHHHHHHHHHHHH
Confidence 9999874442 223 33332 11 123788888877 9999999 5432 33445788999999999886
No 5
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=100.00 E-value=1.2e-38 Score=325.71 Aligned_cols=309 Identities=25% Similarity=0.351 Sum_probs=236.0
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
+||+|||||++|+++|..|++.|++|+|||+++.+||+|... .|+....+.|...+.++
T Consensus 22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~--------------------~ypg~~~dv~s~~y~~~- 80 (549)
T 4ap3_A 22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWN--------------------RYPGARCDVESIDYSYS- 80 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC--------------------CCTTCBCSSCTTTSSCC-
T ss_pred CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccC--------------------CCCCceeCCCchhcccc-
Confidence 589999999999999999999999999999999999999864 23333333444433332
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC-CceEEEEEeCCCceEEEEEcEEEEc
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~-~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
+.............|+++.++.+|+.+.++++++...++++++|++++..++ +.|+|++.++. ++.||+||+|
T Consensus 81 --f~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~----~i~ad~lV~A 154 (549)
T 4ap3_A 81 --FSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGD----EVSARFLVVA 154 (549)
T ss_dssp --SCHHHHHHCCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCC----EEEEEEEEEC
T ss_pred --cccccccCCCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCC----EEEeCEEEEC
Confidence 1100000001245688999999999999999999777999999999998763 47999886654 6899999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecC-CCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc--------
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR-IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-------- 232 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~-~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~-------- 232 (446)
||.++.|+.|++||++.|.|..+|+..+. +..++.+|+|+|||+|.+|+|+|..|++.+++|+++.|++.-
T Consensus 155 tG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~~~~~ 234 (549)
T 4ap3_A 155 AGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGNVP 234 (549)
T ss_dssp CCSEEECCCCCCTTGGGCCSEEEEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC---
T ss_pred cCCCCCCCCCCCCCcccCCCceEEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCcCCC
Confidence 99999999999999999999999999888 577789999999999999999999999999999999998740
Q ss_pred ------cccc----------------------------------------------------------------------
Q 013303 233 ------ETHE---------------------------------------------------------------------- 236 (446)
Q Consensus 233 ------~~~~---------------------------------------------------------------------- 236 (446)
..++
T Consensus 235 ~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (549)
T 4ap3_A 235 LDDATRAEQKANYAERRRLSRESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARAFW 314 (549)
T ss_dssp -CHHHHHHHHHTHHHHHHHHHHSSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTTSSTTTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhccHHHHHHHHhhccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHhhhhhhhcCHHHHHHHHHHH
Confidence 0000
Q ss_pred ---------------cC-C--------------------CCCCeee----ccceeEEccCCcEEecCCcEEeecEEEEec
Q 013303 237 ---------------KQ-P--------------------GYDNMWL----HSMVERANEDGTVVFRNGRVVSADVIMHCT 276 (446)
Q Consensus 237 ---------------~~-~--------------------~~~~v~~----~~~v~~i~~~~~v~~~dG~~~~~D~vi~at 276 (446)
.+ + ...++.+ ...|++|++++ |++.|| ++++|+||+||
T Consensus 315 ~~~~~~~v~d~~~~~~l~P~~~~~~~kR~~~~~~y~~al~~~~V~lvd~~~~~I~~it~~g-v~~~dG-~~~~D~iI~AT 392 (549)
T 4ap3_A 315 EEKIRAVVDDPAVAELLTPKDHAIGAKRIVLDSGYYETYNRDNVELVDLRSTPIVGMDETG-IVTTGA-HYDLDMIVLAT 392 (549)
T ss_dssp HHHHHHHCSCHHHHHHHSCSSCCBTTBCCEEESSTGGGGGSTTEEEEETTTSCEEEEETTE-EEESSC-EEECSEEEECC
T ss_pred HHHHHHHcCCHHHHHhCCCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCceEEeCCc-EEeCCC-ceecCEEEECC
Confidence 00 0 0113333 35688887765 999999 99999999999
Q ss_pred CccCCCCCCCCCC-----eeeeCCC-Ccc-cccccccCCCCCCCeEEecCCC----ccCchhHHHHHHHHHHHHHc
Q 013303 277 GYKYNYPFLETNG-----IVTVDDN-RVG-PLYKHVFPPVLAPGLSFVGIPQ----KVIPFPFFELQSKWIASVLS 341 (446)
Q Consensus 277 G~~~~~~~l~~~g-----~i~~~~~-~~~-~l~~~~~~~~~~p~l~~iG~~~----~~~~~~~~~~qa~~~a~~l~ 341 (446)
||.++..++..-. .+.+++. ... ..|..+..+. .||+|++.-+. ......+.|.|++|+++.|.
T Consensus 393 Gf~~~~~~~~~~~i~g~~G~~l~~~w~~~~~~y~g~~~~g-fPN~f~~~Gp~~~~~~~s~~~~~e~~~~~i~~~i~ 467 (549)
T 4ap3_A 393 GFDAMTGSLDKLEIVGRGGRTLKETWAAGPRTYLGLGIDG-FPNFFNLTGPGSPSVLANMVLHSELHVDWVADAIA 467 (549)
T ss_dssp CEEESSTTGGGSEEECGGGCBHHHHTTTSCCCBTTTBCTT-CTTEEETTCTTSCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCceeEECCCCcCHHHhhccchhhccccccCC-CCcEEEEeCCCCCCcCccHHHHHHHHHHHHHHHHH
Confidence 9999875553211 1333321 112 3788888877 99999986444 23445778999999999886
No 6
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=100.00 E-value=2e-38 Score=323.93 Aligned_cols=308 Identities=26% Similarity=0.382 Sum_probs=231.5
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
+||+|||||++|+++|..|++.|++|+|||+++.+||+|... .|+......+...+.++-
T Consensus 10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~--------------------~yPg~~~d~~~~~y~~~f 69 (545)
T 3uox_A 10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWN--------------------RYPGCRLDTESYAYGYFA 69 (545)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC--------------------CCTTCBCSSCHHHHCHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccC--------------------CCCceeecCchhhccccc
Confidence 589999999999999999999999999999999999999764 233333333333333221
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC-CceEEEEEeCCCceEEEEEcEEEEc
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~-~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.|-.. ........|++..++.+|+.+.++++++...++++++|++++..++ +.|+|++.++. ++.||+||+|
T Consensus 70 ~~~~~---~~~~~~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~----~~~ad~lV~A 142 (545)
T 3uox_A 70 LKGII---PEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEE----VVTCRFLISA 142 (545)
T ss_dssp HTTSS---TTCCCSBSSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTE----EEEEEEEEEC
T ss_pred Ccccc---cCCCccccCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCC----EEEeCEEEEC
Confidence 11000 0011245688999999999999999999777999999999987653 57999886553 7899999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecCCC-------CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC---
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--- 231 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~-------~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~--- 231 (446)
||.++.|+.|++||++.|.|..+|+..+... .++.+|+|+|||+|.+|+|+|..|++.+++|+++.|++.
T Consensus 143 tG~~s~p~~p~ipG~~~f~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~ 222 (545)
T 3uox_A 143 TGPLSASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCT 222 (545)
T ss_dssp CCSCBC---CCCTTGGGCCSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCE
T ss_pred cCCCCCCcCCCCCCccccCCCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccc
Confidence 9999999999999999999999999887765 677899999999999999999999999999999999874
Q ss_pred ---c--------cccc----------------------------------------------------------------
Q 013303 232 ---D--------ETHE---------------------------------------------------------------- 236 (446)
Q Consensus 232 ---~--------~~~~---------------------------------------------------------------- 236 (446)
+ ..++
T Consensus 223 p~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (545)
T 3uox_A 223 PLGNSPMSKEKMDSLRNRYPTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESN 302 (545)
T ss_dssp ECCCCBCCHHHHHHHHHTHHHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHH
T ss_pred cCCcCCCCHHHHHHHHhhhHHHHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHH
Confidence 0 0000
Q ss_pred ----------------------cC-C--------------------CCCCeee----ccceeEEccCCcEEecCCcEEee
Q 013303 237 ----------------------KQ-P--------------------GYDNMWL----HSMVERANEDGTVVFRNGRVVSA 269 (446)
Q Consensus 237 ----------------------~~-~--------------------~~~~v~~----~~~v~~i~~~~~v~~~dG~~~~~ 269 (446)
++ + ...++.+ ...|++|++++ |++.|| ++++
T Consensus 303 ~~~~~~~~~~~~~~v~d~~~~~~l~P~~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~~g-v~~~dG-~~~~ 380 (545)
T 3uox_A 303 KFLADFVAKKIRQRVKDPVVAEKLIPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTPEG-IKTADA-AYDL 380 (545)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHTSCSSSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEETTE-EEESSC-EEEC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHhCCCCCCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEccCe-EEeCCC-eeec
Confidence 00 0 0113433 36788887765 999999 9999
Q ss_pred cEEEEecCccCCCCCCCC------CCeeeeCC-CCcc-cccccccCCCCCCCeEEecCCCc----cCchhHHHHHHHHHH
Q 013303 270 DVIMHCTGYKYNYPFLET------NGIVTVDD-NRVG-PLYKHVFPPVLAPGLSFVGIPQK----VIPFPFFELQSKWIA 337 (446)
Q Consensus 270 D~vi~atG~~~~~~~l~~------~g~i~~~~-~~~~-~l~~~~~~~~~~p~l~~iG~~~~----~~~~~~~~~qa~~~a 337 (446)
|+||+||||.++..++.. +| +.+++ .... ..|..+..+. .||+|++.-+.. .....++|.|+++++
T Consensus 381 D~IV~ATGf~~~~~~~~~~~i~g~~G-~~l~~~w~~~~~~y~g~~~~g-fPN~f~~~gp~~~~~~~s~~~~~e~~~~~i~ 458 (545)
T 3uox_A 381 DVIIYATGFDAVTGSLDRIDIRGKDN-VRLIDAWAEGPSTYLGLQARG-FPNFFTLVGPHNGSTFCNVGVCGGLQAEWVL 458 (545)
T ss_dssp SEEEECCCCBSSSCSCTTSEEECGGG-CBHHHHTTTSCCCBTTTBCTT-CTTEEECSSGGGTGGGSCHHHHHHHHHHHHH
T ss_pred CEEEECCccccccccCCCceEECCCC-ccHHHhhccccceeeccccCC-CCcEEEEeCCCCCCccccHHHHHHHHHHHHH
Confidence 999999999987655532 22 22221 1122 3788888877 999999875542 234567899999999
Q ss_pred HHHc
Q 013303 338 SVLS 341 (446)
Q Consensus 338 ~~l~ 341 (446)
++|.
T Consensus 459 ~~i~ 462 (545)
T 3uox_A 459 RMIS 462 (545)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9886
No 7
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=100.00 E-value=3e-37 Score=316.45 Aligned_cols=310 Identities=25% Similarity=0.396 Sum_probs=229.2
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
+||+|||||++|+++|..|++.|++|+|||+++.+||+|.... |+++..+.+...+.++
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~--------------------~pg~~~d~~~~~~~~~- 75 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNR--------------------YPGARCDIESIEYCYS- 75 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCC--------------------CTTCBCSSCTTTSSCC-
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccC--------------------CCceeecccccccccc-
Confidence 5899999999999999999999999999999999999997531 2222222222222222
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC-CceEEEEEeCCCceEEEEEcEEEEc
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~-~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
|.+...........|+++.++.+|+..+++++++...++++++|++++..++ +.|+|++.++. ++.||+||+|
T Consensus 76 --f~~~~~~~~~~~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~----~~~ad~vV~A 149 (542)
T 1w4x_A 76 --FSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGD----RIRARYLIMA 149 (542)
T ss_dssp --SCHHHHHHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCC----EEEEEEEEEC
T ss_pred --cChhhhhccCcccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCC----EEEeCEEEEC
Confidence 1000000001134678899999999999999998777999999999998653 57999876543 6899999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecC-CCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc-------c
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR-IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-------E 233 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~-~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~-------~ 233 (446)
||.++.|++|++||++.|.|.++|+..+. +..++.+|+|+|||+|.||+|+|..|++.+.+|+++.|++.- .
T Consensus 150 tG~~s~p~~p~i~G~~~f~G~~~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~ 229 (542)
T 1w4x_A 150 SGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAP 229 (542)
T ss_dssp CCSCCCCCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCB
T ss_pred cCCCCCCCCCCCCCcccCCCceEECCCCCCchhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCC
Confidence 99999999999999999999999999887 556788999999999999999999999999999999987630 0
Q ss_pred -------cccc---------------------------------------------------------------------
Q 013303 234 -------THEK--------------------------------------------------------------------- 237 (446)
Q Consensus 234 -------~~~~--------------------------------------------------------------------- 237 (446)
.+.+
T Consensus 230 ~~~~~~~~~~~~~p~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 309 (542)
T 1w4x_A 230 LDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFI 309 (542)
T ss_dssp CCHHHHHHHHTTHHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhhCHHHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHH
Confidence 0000
Q ss_pred ----------------C-C--------------------CCCCeee----ccceeEEccCCcEEecCCcEEeecEEEEec
Q 013303 238 ----------------Q-P--------------------GYDNMWL----HSMVERANEDGTVVFRNGRVVSADVIMHCT 276 (446)
Q Consensus 238 ----------------~-~--------------------~~~~v~~----~~~v~~i~~~~~v~~~dG~~~~~D~vi~at 276 (446)
+ + ..+++.+ ...|+++++++ |+++| +++++|+||+||
T Consensus 310 ~~~~~~~~~~~~~~~~l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~g-v~~~d-~~~~~D~ii~at 387 (542)
T 1w4x_A 310 RNKIRNTVRDPEVAERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRG-VRTSE-REYELDSLVLAT 387 (542)
T ss_dssp HHHHHHHCSSHHHHHHHSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSSE-EEESS-CEEECSEEEECC
T ss_pred HHHHHHHcCCHHHHHhcCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCCe-EEeCC-eEEecCEEEEcC
Confidence 0 0 0022333 35688887655 99999 899999999999
Q ss_pred CccCCCCCCC------CCCeeeeCCCCcc-cccccccCCCCCCCeEEe-cCCCc---cCchhHHHHHHHHHHHHHcC
Q 013303 277 GYKYNYPFLE------TNGIVTVDDNRVG-PLYKHVFPPVLAPGLSFV-GIPQK---VIPFPFFELQSKWIASVLSG 342 (446)
Q Consensus 277 G~~~~~~~l~------~~g~i~~~~~~~~-~l~~~~~~~~~~p~l~~i-G~~~~---~~~~~~~~~qa~~~a~~l~g 342 (446)
|+.++.+++. .+|....+..... ..|..+..+. .||+|++ |.... ......+|.|+++++++|..
T Consensus 388 G~~~~~~~~~~~~i~g~~G~~l~~~w~~~~~~y~~~~v~~-~Pn~f~~~G~~~~~~~~~~~~~~e~q~~~ia~~i~~ 463 (542)
T 1w4x_A 388 GFDALTGALFKIDIRGVGNVALKEKWAAGPRTYLGLSTAG-FPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAY 463 (542)
T ss_dssp CCCCTTHHHHTSEEECGGGCBHHHHTTTSCCCBTTTBCTT-STTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred CccccccCcCceeeECCCCCCHHHhhcCchheecccccCC-CCceEEEcCCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 9999765543 2232222222222 2677777766 8999998 86532 22347889999999999863
No 8
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=100.00 E-value=6.6e-37 Score=299.41 Aligned_cols=311 Identities=20% Similarity=0.257 Sum_probs=218.0
Q ss_pred CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
+||+|||||++|+++|..|++.|+ +|+|||+++ +||.|.+.+... ....+.+ ....+++.
T Consensus 5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~-----------~~~~~~~-------~~~~~g~~ 65 (369)
T 3d1c_A 5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKST-----------RTITPSF-------TSNGFGMP 65 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTC-----------BCSSCCC-------CCGGGTCC
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCcccc-----------cccCcch-------hcccCCch
Confidence 689999999999999999999999 999999988 999997642110 0000000 01111221
Q ss_pred CCCCCcCC-CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303 82 AYPFVARN-YEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~-~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv 160 (446)
++...... .+.......++++.++.+|+.++++++++. ++++++|+++++.+ +.|+|.+.++ ++.||+||+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~g-----~~~~d~vVl 137 (369)
T 3d1c_A 66 DMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELN--IFENTVVTNISADD-AYYTIATTTE-----TYHADYIFV 137 (369)
T ss_dssp CTTCSSTTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECS-SSEEEEESSC-----CEEEEEEEE
T ss_pred hhhhccccccccccccccCCCHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEECC-CeEEEEeCCC-----EEEeCEEEE
Confidence 11111000 000000234678899999999999999987 89999999999875 6798876543 488999999
Q ss_pred ccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc--------
Q 013303 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-------- 232 (446)
Q Consensus 161 AtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~-------- 232 (446)
|||+++.| .+|+ +..+|+..+.....+++++|+|||+|.+|+|+|..|++.+.+|+++.+++..
T Consensus 138 AtG~~~~p---~ip~-----~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~ 209 (369)
T 3d1c_A 138 ATGDYNFP---KKPF-----KYGIHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPS 209 (369)
T ss_dssp CCCSTTSB---CCCS-----SSCEEGGGCSCGGGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CT
T ss_pred CCCCCCcc---CCCC-----CceechhhcCChhhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCC
Confidence 99965554 4555 3568888888777788999999999999999999999999999999987641
Q ss_pred --------cccccC-CCC--CCeeeccceeEEccC-C--cEEecCCcEEe-ecEEEEecCccCCCCCCC------CCCee
Q 013303 233 --------ETHEKQ-PGY--DNMWLHSMVERANED-G--TVVFRNGRVVS-ADVIMHCTGYKYNYPFLE------TNGIV 291 (446)
Q Consensus 233 --------~~~~~~-~~~--~~v~~~~~v~~i~~~-~--~v~~~dG~~~~-~D~vi~atG~~~~~~~l~------~~g~i 291 (446)
+.+.+. .+. -.+.....|.++..+ + .|.+.||+++. +|.||+|||++|+++++. +.|.+
T Consensus 210 ~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~~~~~g~i 289 (369)
T 3d1c_A 210 VRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDI 289 (369)
T ss_dssp TSCCHHHHHHHHHHHHTTCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHSCCTTSCC
T ss_pred ccCCHHHHHHHHHHHhhCCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCCccchhhhhhccCCCCCE
Confidence 011111 111 234445678888432 2 27789998876 699999999999985543 33444
Q ss_pred eeCCCCcccccccccCCCCCCCeEEecCCCccC-----chhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 013303 292 TVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-----PFPFFELQSKWIASVLSGRIVLPSQDEMMEDVK 357 (446)
Q Consensus 292 ~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-----~~~~~~~qa~~~a~~l~g~~~lp~~~~m~~~~~ 357 (446)
.+|+.. +. ++.|+||++|++.... ....++.||+++|++|.|+..+|+.++|.+++.
T Consensus 290 ~v~~~~--------~~-t~~~~v~a~GD~~~~~~~~~~~~~~~~~~a~~~a~~l~~~~~~p~~~~~~~~~~ 351 (369)
T 3d1c_A 290 KLTTHD--------ES-TRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQREGLPAKQEVIENYQ 351 (369)
T ss_dssp CBCTTS--------BB-SSSTTEEECSTTCCCSSCCCCSHHHHGGGHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred Eechhh--------cc-cCCCCeEEeccccccCCeeEEEEehhhHHHHHHHHHHhcccCCCCcchHHHHHH
Confidence 444432 22 4489999999875321 123567899999999999999999887766544
No 9
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=100.00 E-value=2.6e-36 Score=290.58 Aligned_cols=280 Identities=16% Similarity=0.185 Sum_probs=217.2
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
+||+|||||+|||++|..|++.|++|+|||+++.+||.|.+. |+... ...++.
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~---------------------~~~~~------~~~~~~ 60 (332)
T 3lzw_A 8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSAL---------------------YPEKY------IYDVAG 60 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHH---------------------CTTSE------ECCSTT
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhc---------------------CCCce------EeccCC
Confidence 699999999999999999999999999999999999999642 11000 011111
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt 162 (446)
++ ..+..++..|+.++++++++. ++++++|+++++..++.|.|++.++ ++.||+||+||
T Consensus 61 ~~--------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~v~~~~g-----~~~~d~vVlAt 119 (332)
T 3lzw_A 61 FP--------------KIRAQELINNLKEQMAKFDQT--ICLEQAVESVEKQADGVFKLVTNEE-----THYSKTVIITA 119 (332)
T ss_dssp CS--------------SEEHHHHHHHHHHHHTTSCCE--EECSCCEEEEEECTTSCEEEEESSE-----EEEEEEEEECC
T ss_pred CC--------------CCCHHHHHHHHHHHHHHhCCc--EEccCEEEEEEECCCCcEEEEECCC-----EEEeCEEEECC
Confidence 11 124689999999999999877 8999999999987644799887654 48999999999
Q ss_pred CCCC-CCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----cccccc
Q 013303 163 GHFS-VPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEK 237 (446)
Q Consensus 163 G~~s-~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~----~~~~~~ 237 (446)
|..+ .|+.|.+||.+.|.+..+|+ .+.+...+++++|+|||+|.+|+|+|..|++.+.+|+++.+.+. ...+.+
T Consensus 120 G~~~~~p~~~~~~g~~~~~g~~~~~-~~~~~~~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~ 198 (332)
T 3lzw_A 120 GNGAFKPRKLELENAEQYEGKNLHY-FVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVEN 198 (332)
T ss_dssp TTSCCEECCCCCTTGGGGBTTTEES-SCSCGGGGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSCHHHHHH
T ss_pred CCCcCCCCCCCCCChhhccCceEEE-ecCCHHHcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCccHHHHHH
Confidence 9533 89999999998888778887 67777777899999999999999999999999999999998875 111222
Q ss_pred CCCCC-CeeeccceeEEccCCc---EEecC-----CcEEeecEEEEecCccCCCCCCCC------CCeeeeCCCCccccc
Q 013303 238 QPGYD-NMWLHSMVERANEDGT---VVFRN-----GRVVSADVIMHCTGYKYNYPFLET------NGIVTVDDNRVGPLY 302 (446)
Q Consensus 238 ~~~~~-~v~~~~~v~~i~~~~~---v~~~d-----G~~~~~D~vi~atG~~~~~~~l~~------~g~i~~~~~~~~~l~ 302 (446)
+.+.+ ++.....|.++..++. |.+.+ ++++++|.||+|+|+.|+.+++.. .|.+.+|++.+
T Consensus 199 l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~---- 274 (332)
T 3lzw_A 199 LHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTME---- 274 (332)
T ss_dssp HHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCEETTEEECCTTSB----
T ss_pred HhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccccCCeEEeCCCCc----
Confidence 22222 4555678888876543 77776 456889999999999999888754 35566666554
Q ss_pred ccccCCCCCCCeEEecCCCc----cCchhHHHHHHHHHHHHHc
Q 013303 303 KHVFPPVLAPGLSFVGIPQK----VIPFPFFELQSKWIASVLS 341 (446)
Q Consensus 303 ~~~~~~~~~p~l~~iG~~~~----~~~~~~~~~qa~~~a~~l~ 341 (446)
++.|+||++|++.. ......+..||+.+|.++.
T Consensus 275 ------t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~ 311 (332)
T 3lzw_A 275 ------TNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAK 311 (332)
T ss_dssp ------CSSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHH
T ss_pred ------eecCCEEEccceecCCCCcceEeeehhhHHHHHHHHH
Confidence 45899999998852 3345677889998888775
No 10
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=100.00 E-value=7.6e-36 Score=286.07 Aligned_cols=274 Identities=20% Similarity=0.211 Sum_probs=214.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
++||+|||||++|+++|..|++.|++|+|||++ +||.|.+.... ..++
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~~~------------------------------~~~~ 62 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAGIV------------------------------DDYL 62 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCCEE------------------------------CCST
T ss_pred ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecccccc------------------------------cccC
Confidence 469999999999999999999999999999997 99999863100 0011
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.+ ...+..++.+++.+++++++++ +++ ++|.+++... +.|.|.+.++. ++.||+||+|
T Consensus 63 ~~--------------~~~~~~~~~~~~~~~~~~~~v~--~~~-~~v~~i~~~~-~~~~v~~~~g~----~~~~d~lvlA 120 (323)
T 3f8d_A 63 GL--------------IEIQASDMIKVFNKHIEKYEVP--VLL-DIVEKIENRG-DEFVVKTKRKG----EFKADSVILG 120 (323)
T ss_dssp TS--------------TTEEHHHHHHHHHHHHHTTTCC--EEE-SCEEEEEEC---CEEEEESSSC----EEEEEEEEEC
T ss_pred CC--------------CCCCHHHHHHHHHHHHHHcCCE--EEE-EEEEEEEecC-CEEEEEECCCC----EEEcCEEEEC
Confidence 11 1134689999999999999998 777 8999998876 67888876643 7899999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----cccccc
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEK 237 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~----~~~~~~ 237 (446)
|| +.|+.|.+||.+.|.+..+|...+.+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.+.+. ...+.+
T Consensus 121 tG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~ 198 (323)
T 3f8d_A 121 IG--VKRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVET 198 (323)
T ss_dssp CC--CEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCSCHHHHHH
T ss_pred cC--CCCccCCCCchhhhcCCceEEeccCCHhHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCcCHHHHHH
Confidence 99 679999999998887777777666666667889999999999999999999999999999999875 122233
Q ss_pred CCCCC--CeeeccceeEEccCCc---EEecC---Cc--EEeecEEEEecCccCCCCCC-------CCCCeeeeCCCCccc
Q 013303 238 QPGYD--NMWLHSMVERANEDGT---VVFRN---GR--VVSADVIMHCTGYKYNYPFL-------ETNGIVTVDDNRVGP 300 (446)
Q Consensus 238 ~~~~~--~v~~~~~v~~i~~~~~---v~~~d---G~--~~~~D~vi~atG~~~~~~~l-------~~~g~i~~~~~~~~~ 300 (446)
+.+.. ++.....|.++..++. |.+.| |+ ++++|.||+|+|+.|+.+++ ++.|.+.+|++..
T Consensus 199 ~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~~-- 276 (323)
T 3f8d_A 199 VKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMR-- 276 (323)
T ss_dssp HHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTTCB--
T ss_pred HHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCCcEecCCCce--
Confidence 33332 4555667888876653 77776 87 68899999999999997765 3445666666544
Q ss_pred ccccccCCCCCCCeEEecCCCc----cCchhHHHHHHHHHHHHHc
Q 013303 301 LYKHVFPPVLAPGLSFVGIPQK----VIPFPFFELQSKWIASVLS 341 (446)
Q Consensus 301 l~~~~~~~~~~p~l~~iG~~~~----~~~~~~~~~qa~~~a~~l~ 341 (446)
++.|+||++|++.. ......+..||+.+|.++.
T Consensus 277 --------t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~ 313 (323)
T 3f8d_A 277 --------TSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAY 313 (323)
T ss_dssp --------CSSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHH
T ss_pred --------ecCCCEEEcceecCCCCcccceeehhhHHHHHHHHHH
Confidence 45899999999875 3456778889999988875
No 11
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=100.00 E-value=1.8e-35 Score=280.11 Aligned_cols=272 Identities=14% Similarity=0.170 Sum_probs=209.9
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~ 80 (446)
|++||+|||||++|+++|..|++.|++|+|||+++..++.+... ..
T Consensus 1 m~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~---------------------------------~~- 46 (297)
T 3fbs_A 1 MKFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHS---------------------------------HG- 46 (297)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCC---------------------------------CS-
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhh---------------------------------cC-
Confidence 67899999999999999999999999999999975433222110 00
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV 159 (446)
++ .....+..++.+++.++++++ ++. .++++|+.+++.+ +.|.|++.++. ++.||+||
T Consensus 47 --~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~~v~~i~~~~-~~~~v~~~~g~----~~~~d~vv 105 (297)
T 3fbs_A 47 --FL-----------GQDGKAPGEIIAEARRQIERYPTIH---WVEGRVTDAKGSF-GEFIVEIDGGR----RETAGRLI 105 (297)
T ss_dssp --ST-----------TCTTCCHHHHHHHHHHHHTTCTTEE---EEESCEEEEEEET-TEEEEEETTSC----EEEEEEEE
T ss_pred --Cc-----------CCCCCCHHHHHHHHHHHHHhcCCeE---EEEeEEEEEEEcC-CeEEEEECCCC----EEEcCEEE
Confidence 11 112345689999999999887 332 3367999999876 67998886653 79999999
Q ss_pred EccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC--cccc-c
Q 013303 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--DETH-E 236 (446)
Q Consensus 160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~--~~~~-~ 236 (446)
+||| +.|+.|.+||++.+.+..+|...+.+...+++++|+|||+|.+|+|+|..|++.+ +|+++.+.+. ...+ +
T Consensus 106 iAtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~~~~~~~~ 182 (297)
T 3fbs_A 106 LAMG--VTDELPEIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVEPDADQHA 182 (297)
T ss_dssp ECCC--CEEECCCCBTTGGGBTTTEESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCCCCHHHHH
T ss_pred ECCC--CCCCCCCCCCchhhcCCeeEEcccCcchhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCCCCHHHHH
Confidence 9999 7899999999988777777777776666778999999999999999999999998 9999998764 1111 1
Q ss_pred cCCCCC-CeeeccceeEEccCCcEEecCCcEEeecEEEEecCccCCCCCCCC---------CC-eeeeCCCCcccccccc
Q 013303 237 KQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLET---------NG-IVTVDDNRVGPLYKHV 305 (446)
Q Consensus 237 ~~~~~~-~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~---------~g-~i~~~~~~~~~l~~~~ 305 (446)
.+.+.+ ++. ...|+++..++.|.+.||+++++|.||+|||+.|+.+++.. .| .+.+|++..
T Consensus 183 ~l~~~gv~i~-~~~v~~i~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~------- 254 (297)
T 3fbs_A 183 LLAARGVRVE-TTRIREIAGHADVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQ------- 254 (297)
T ss_dssp HHHHTTCEEE-CSCEEEEETTEEEEETTSCEEEESEEEECCEEECCCSCHHHHTCCEEEETTEEEECCCTTCB-------
T ss_pred HHHHCCcEEE-cceeeeeecCCeEEeCCCCEEEEEEEEEccCcccCchhHHhcCCccccCCCCceEEeCCCCc-------
Confidence 111222 343 36888887754699999999999999999999999988642 23 466665544
Q ss_pred cCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHc
Q 013303 306 FPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLS 341 (446)
Q Consensus 306 ~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~ 341 (446)
++.|+||++|++.. ......+..||+.+|.++.
T Consensus 255 ---t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 288 (297)
T 3fbs_A 255 ---TTARGIFACGDVARPAGSVALAVGDGAMAGAAAH 288 (297)
T ss_dssp ---CSSTTEEECSGGGCTTCCHHHHHHHHHHHHHHHH
T ss_pred ---cCCCCEEEEeecCCchHHHHHHHHhHHHHHHHHH
Confidence 55899999999876 5567788899999998874
No 12
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=100.00 E-value=6.8e-35 Score=280.24 Aligned_cols=278 Identities=21% Similarity=0.243 Sum_probs=211.4
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
+||+|||||++|+++|..|++.|++|+|||+. .+||.|...... ..++.
T Consensus 9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~------------------------------~~~~~ 57 (325)
T 2q7v_A 9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAWSEEV------------------------------ENFPG 57 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCSCB------------------------------CCSTT
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccccccc------------------------------ccCCC
Confidence 68999999999999999999999999999998 789998763100 00111
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEc--CCCceEEEEEeCCCceEEEEEcEEEE
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV--ESNKWKVKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~--~~~~~~v~~~~~~~~~~~~~~d~VVv 160 (446)
+ +...++.++.+++.++++++++. +++ ++|..++.. ++..|+|.+.++. ++.||+||+
T Consensus 58 ~-------------~~~~~~~~~~~~l~~~~~~~gv~--~~~-~~v~~i~~~~~~~~~~~v~~~~g~----~~~~~~vv~ 117 (325)
T 2q7v_A 58 F-------------PEPIAGMELAQRMHQQAEKFGAK--VEM-DEVQGVQHDATSHPYPFTVRGYNG----EYRAKAVIL 117 (325)
T ss_dssp C-------------SSCBCHHHHHHHHHHHHHHTTCE--EEE-CCEEEEEECTTSSSCCEEEEESSC----EEEEEEEEE
T ss_pred C-------------CCCCCHHHHHHHHHHHHHHcCCE--EEe-eeEEEEEeccCCCceEEEEECCCC----EEEeCEEEE
Confidence 1 11235678999999999999987 666 689999876 4123888776653 799999999
Q ss_pred ccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----ccccc
Q 013303 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHE 236 (446)
Q Consensus 161 AtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~----~~~~~ 236 (446)
||| +.|+.|.+||.+.+.+..+|+..+.+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.+++. ....+
T Consensus 118 AtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~ 195 (325)
T 2q7v_A 118 ATG--ADPRKLGIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRANKVAQA 195 (325)
T ss_dssp CCC--EEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHHH
T ss_pred CcC--CCcCCCCCCChhhccCceEEEeccCCHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCcchHHHH
Confidence 999 778899999998777766776555444456789999999999999999999999999999998764 11222
Q ss_pred cCCCCC--CeeeccceeEEccCC---cEEec---CCc--EEeecEEEEecCccCCCCCCCC------CCeeeeCCCCccc
Q 013303 237 KQPGYD--NMWLHSMVERANEDG---TVVFR---NGR--VVSADVIMHCTGYKYNYPFLET------NGIVTVDDNRVGP 300 (446)
Q Consensus 237 ~~~~~~--~v~~~~~v~~i~~~~---~v~~~---dG~--~~~~D~vi~atG~~~~~~~l~~------~g~i~~~~~~~~~ 300 (446)
++.+.. ++.....|.++..++ .|.+. +|+ ++++|.||+|||++|+.+++.. .|.+.+|++.+
T Consensus 196 ~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~-- 273 (325)
T 2q7v_A 196 RAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRDEIY-- 273 (325)
T ss_dssp HHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCBTTTB--
T ss_pred HHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhhcccCCCccEecCCCCc--
Confidence 332222 455567888887654 36776 676 6889999999999999888753 34455554433
Q ss_pred ccccccCCCCCCCeEEecCCCcc--CchhHHHHHHHHHHHHHcCC
Q 013303 301 LYKHVFPPVLAPGLSFVGIPQKV--IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 301 l~~~~~~~~~~p~l~~iG~~~~~--~~~~~~~~qa~~~a~~l~g~ 343 (446)
++.|+||++|++... .....+..||+.+|.++...
T Consensus 274 --------t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 310 (325)
T 2q7v_A 274 --------TNIPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTERQ 310 (325)
T ss_dssp --------CSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred --------cCCCCEEEeecccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999998653 45677889999999888643
No 13
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=100.00 E-value=3.5e-35 Score=283.35 Aligned_cols=281 Identities=18% Similarity=0.204 Sum_probs=209.6
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
+||+|||||++|+++|..|++.|++|+|||+.+.+||.|.... |+ ..+| .++.
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~----------~~-----~~~~------------~~~~ 58 (335)
T 2zbw_A 6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALY----------PE-----KYIY------------DVAG 58 (335)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTC----------TT-----SEEC------------CSTT
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccC----------CC-----ceee------------ccCC
Confidence 6899999999999999999999999999999999999986420 00 0000 0111
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt 162 (446)
++ .....++.+++.++++++++. ++++++|..++..+ +.|+|++.++. ++.||+||+||
T Consensus 59 ~~--------------~~~~~~~~~~l~~~~~~~~~~--~~~~~~v~~i~~~~-~~~~v~~~~g~----~~~~~~lv~At 117 (335)
T 2zbw_A 59 FP--------------KVYAKDLVKGLVEQVAPFNPV--YSLGERAETLEREG-DLFKVTTSQGN----AYTAKAVIIAA 117 (335)
T ss_dssp CS--------------SEEHHHHHHHHHHHHGGGCCE--EEESCCEEEEEEET-TEEEEEETTSC----EEEEEEEEECC
T ss_pred CC--------------CCCHHHHHHHHHHHHHHcCCE--EEeCCEEEEEEECC-CEEEEEECCCC----EEEeCEEEECC
Confidence 11 124578899999999988876 88999999999876 57888765442 68999999999
Q ss_pred CCCC-CCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc-------cc
Q 013303 163 GHFS-VPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-------ET 234 (446)
Q Consensus 163 G~~s-~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~-------~~ 234 (446)
|..+ .|+.|+++|.+.+.+..+|.. +++.+.+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++.. ..
T Consensus 118 G~~~~~p~~~~i~g~~~~~~~~~~~~-~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~~~~~~~~ 196 (335)
T 2zbw_A 118 GVGAFEPRRIGAPGEREFEGRGVYYA-VKSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRAHEASVKE 196 (335)
T ss_dssp TTSEEEECCCCCTTTTTTBTTTEESS-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCSCHHHHHH
T ss_pred CCCCCCCCCCCCCChhhccCcEEEEe-cCchhhcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCccHHHHHH
Confidence 9533 688888999877766545443 44555667899999999999999999999999999999998741 11
Q ss_pred ccc-CCC-CCCeeeccceeEEccCC---cEEec---CC--cEEeecEEEEecCccCCCCCCCC------CCeeeeCCCCc
Q 013303 235 HEK-QPG-YDNMWLHSMVERANEDG---TVVFR---NG--RVVSADVIMHCTGYKYNYPFLET------NGIVTVDDNRV 298 (446)
Q Consensus 235 ~~~-~~~-~~~v~~~~~v~~i~~~~---~v~~~---dG--~~~~~D~vi~atG~~~~~~~l~~------~g~i~~~~~~~ 298 (446)
+.+ +.+ .-++.....|.++..++ .|.+. +| +++++|.||+|+|++|+.+++.. .|.+.+|+..+
T Consensus 197 l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~ 276 (335)
T 2zbw_A 197 LMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTMA 276 (335)
T ss_dssp HHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEETTEEECCTTCB
T ss_pred HHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceeccCCeeeeCCCCC
Confidence 111 111 12455566788887654 37776 78 56899999999999999887754 34455655443
Q ss_pred ccccccccCCCCCCCeEEecCCCcc----CchhHHHHHHHHHHHHHcC
Q 013303 299 GPLYKHVFPPVLAPGLSFVGIPQKV----IPFPFFELQSKWIASVLSG 342 (446)
Q Consensus 299 ~~l~~~~~~~~~~p~l~~iG~~~~~----~~~~~~~~qa~~~a~~l~g 342 (446)
++.|+||++|++... .....+..||+.+|+++.+
T Consensus 277 ----------t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~ 314 (335)
T 2zbw_A 277 ----------TSIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAAA 314 (335)
T ss_dssp ----------CSSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCCEEEeccccccCcchhhhhhhHHHHHHHHHHHHH
Confidence 458999999998632 3456677899998888753
No 14
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=100.00 E-value=3.6e-35 Score=283.32 Aligned_cols=287 Identities=17% Similarity=0.189 Sum_probs=212.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEee----CCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK----GEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~----~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~ 77 (446)
++||+|||||++||++|..|++.|++|+|||+ ...+||.|.+... .
T Consensus 22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~------------------------------~ 71 (338)
T 3itj_A 22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTE------------------------------I 71 (338)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSE------------------------------E
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchh------------------------------h
Confidence 57999999999999999999999999999999 4478898876310 0
Q ss_pred cccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcE
Q 013303 78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (446)
Q Consensus 78 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~ 157 (446)
..++. .+.+.+..++.+++.++++++++. +++++ |..++... +.|++.+.... ...++.||+
T Consensus 72 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~gv~--i~~~~-v~~i~~~~-~~~~v~~~~~~-~~~~~~~d~ 133 (338)
T 3itj_A 72 ENFPG-------------FPDGLTGSELMDRMREQSTKFGTE--IITET-VSKVDLSS-KPFKLWTEFNE-DAEPVTTDA 133 (338)
T ss_dssp CCSTT-------------CTTCEEHHHHHHHHHHHHHHTTCE--EECSC-EEEEECSS-SSEEEEETTCS-SSCCEEEEE
T ss_pred cccCC-------------CcccCCHHHHHHHHHHHHHHcCCE--EEEeE-EEEEEEcC-CEEEEEEEecC-CCcEEEeCE
Confidence 00111 123345789999999999999988 88888 99998776 67877763211 113689999
Q ss_pred EEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCC--CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc---
Q 013303 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN--PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD--- 232 (446)
Q Consensus 158 VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~--~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~--- 232 (446)
||+||| +.|+.|.+||.+.+.+..+++..+.... .+.+++|+|||+|.+|+|+|..|++.+.+|+++.+.+..
T Consensus 134 vvlAtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~~ 211 (338)
T 3itj_A 134 IILATG--ASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRAS 211 (338)
T ss_dssp EEECCC--EEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSC
T ss_pred EEECcC--CCcCCCCCCCchhccCccEEEchhcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCCC
Confidence 999999 7899999999876666666665543333 567899999999999999999999999999999998751
Q ss_pred -cccccCCCC--CCeeeccceeEEccCCc----EEecC-----CcEEeecEEEEecCccCCCCCCCCCCeeeeCCCCccc
Q 013303 233 -ETHEKQPGY--DNMWLHSMVERANEDGT----VVFRN-----GRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGP 300 (446)
Q Consensus 233 -~~~~~~~~~--~~v~~~~~v~~i~~~~~----v~~~d-----G~~~~~D~vi~atG~~~~~~~l~~~g~i~~~~~~~~~ 300 (446)
.....+.+. .++.....|.++..++. |++.+ ++++++|.||+|||+.|+.+++.. + +.++++....
T Consensus 212 ~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~-l~~~~~G~i~ 289 (338)
T 3itj_A 212 TIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAG-Q-VDTDEAGYIK 289 (338)
T ss_dssp HHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBT-T-BCBCTTSCBC
T ss_pred HHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhC-c-eEecCCCcEE
Confidence 112222222 24556678888876653 77776 467899999999999999988765 3 4444333211
Q ss_pred ccccccCCCCCCCeEEecCCCc--cCchhHHHHHHHHHHHHHc
Q 013303 301 LYKHVFPPVLAPGLSFVGIPQK--VIPFPFFELQSKWIASVLS 341 (446)
Q Consensus 301 l~~~~~~~~~~p~l~~iG~~~~--~~~~~~~~~qa~~~a~~l~ 341 (446)
..+..+. ++.|+||++|++.. ......+..||+.+|.++.
T Consensus 290 v~~~~~~-t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 331 (338)
T 3itj_A 290 TVPGSSL-TSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAE 331 (338)
T ss_dssp CCTTSSB-CSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHH
T ss_pred EcCcccc-cCCCCEEEeeccCCCCccceeeehhhhHHHHHHHH
Confidence 1222233 44899999999874 3456677889999888775
No 15
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=100.00 E-value=1.2e-34 Score=276.77 Aligned_cols=284 Identities=18% Similarity=0.216 Sum_probs=208.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~ 80 (446)
++||+|||||++|+++|..|++.|+ +|+|||+. .+||.|...... ..+
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~~~~~------------------------------~~~ 49 (311)
T 2q0l_A 1 MIDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITGSSEI------------------------------ENY 49 (311)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGGCSCB------------------------------CCS
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCccccccccc------------------------------ccC
Confidence 4799999999999999999999999 99999994 688888753100 001
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv 160 (446)
+.+ +...+..++.+++.++++++++. +++ ++|..++... +.|+|++.++. ++.||+||+
T Consensus 50 ~~~-------------~~~~~~~~~~~~l~~~~~~~~v~--~~~-~~v~~i~~~~-~~~~v~~~~g~----~~~~~~vv~ 108 (311)
T 2q0l_A 50 PGV-------------KEVVSGLDFMQPWQEQCFRFGLK--HEM-TAVQRVSKKD-SHFVILAEDGK----TFEAKSVII 108 (311)
T ss_dssp TTC-------------CSCBCHHHHHHHHHHHHHTTSCE--EEC-SCEEEEEEET-TEEEEEETTSC----EEEEEEEEE
T ss_pred CCC-------------cccCCHHHHHHHHHHHHHHcCCE--EEE-EEEEEEEEcC-CEEEEEEcCCC----EEECCEEEE
Confidence 111 12345688999999999998887 776 7899998876 66888765443 789999999
Q ss_pred ccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc----cccc
Q 013303 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----ETHE 236 (446)
Q Consensus 161 AtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~----~~~~ 236 (446)
||| +.|+.|++||.+.|.+..+|+..+.+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.+++.. ...+
T Consensus 109 AtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~ 186 (311)
T 2q0l_A 109 ATG--GSPKRTGIKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITLE 186 (311)
T ss_dssp CCC--EEECCCCCBTHHHHBTTTEESCHHHHGGGGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCCSCHHHHH
T ss_pred CCC--CCCCCCCCCChhhccCCcEEEeecCChhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccCCCHHHHH
Confidence 999 7889999999876655666665444444567899999999999999999999999999999987641 1222
Q ss_pred cCCCCC--CeeeccceeEEccC-C---cEEec---CCc--EEeecEEEEecCccCCCCCCCCCC---eeeeCCCCccccc
Q 013303 237 KQPGYD--NMWLHSMVERANED-G---TVVFR---NGR--VVSADVIMHCTGYKYNYPFLETNG---IVTVDDNRVGPLY 302 (446)
Q Consensus 237 ~~~~~~--~v~~~~~v~~i~~~-~---~v~~~---dG~--~~~~D~vi~atG~~~~~~~l~~~g---~i~~~~~~~~~l~ 302 (446)
++.+.. ++.....|.++..+ + .|.+. +|+ ++++|.||+|+|+.|+.+++...+ .+.++++......
T Consensus 187 ~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd 266 (311)
T 2q0l_A 187 HAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVD 266 (311)
T ss_dssp HHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCC
T ss_pred HHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeC
Confidence 232222 44556678888754 3 26776 676 688999999999999988875442 1333332221111
Q ss_pred ccccCCCCCCCeEEecCCCcc--CchhHHHHHHHHHHHHHc
Q 013303 303 KHVFPPVLAPGLSFVGIPQKV--IPFPFFELQSKWIASVLS 341 (446)
Q Consensus 303 ~~~~~~~~~p~l~~iG~~~~~--~~~~~~~~qa~~~a~~l~ 341 (446)
..+. ++.|+||++|++... .....+..||+.+|.++.
T Consensus 267 -~~~~-t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 305 (311)
T 2q0l_A 267 -FSMK-TNVQGLFAAGDIRIFAPKQVVCAASDGATAALSVI 305 (311)
T ss_dssp -TTCB-CSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHH
T ss_pred -Cccc-cCCCCeEEcccccCcchHHHHHHHHhHHHHHHHHH
Confidence 1223 458999999998753 456778899999998875
No 16
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=100.00 E-value=3.4e-34 Score=279.32 Aligned_cols=283 Identities=20% Similarity=0.258 Sum_probs=210.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
++||+|||||++|+++|..|++.|++|+|||+.+.+||.|.... |. ...| .++
T Consensus 14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~----------~~-----~~~~------------~~~ 66 (360)
T 3ab1_A 14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALY----------PE-----KHIY------------DVA 66 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTC----------TT-----SEEC------------CST
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccC----------CC-----cccc------------cCC
Confidence 46999999999999999999999999999999999999986420 00 0000 000
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.++ .....++.+++.+.++++++. ++++++|+.++...++.|+|++.++. ++.||+||+|
T Consensus 67 ~~~--------------~~~~~~~~~~l~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~v~~~~g~----~~~~~~li~A 126 (360)
T 3ab1_A 67 GFP--------------EVPAIDLVESLWAQAERYNPD--VVLNETVTKYTKLDDGTFETRTNTGN----VYRSRAVLIA 126 (360)
T ss_dssp TCS--------------SEEHHHHHHHHHHHHHTTCCE--EECSCCEEEEEECTTSCEEEEETTSC----EEEEEEEEEC
T ss_pred CCC--------------CCCHHHHHHHHHHHHHHhCCE--EEcCCEEEEEEECCCceEEEEECCCc----EEEeeEEEEc
Confidence 111 124578899999999988876 88999999999875347888875543 7899999999
Q ss_pred cCCCC-CCccCCCCC-CCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----cccc
Q 013303 162 NGHFS-VPRLAQVPG-IDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETH 235 (446)
Q Consensus 162 tG~~s-~p~~p~i~G-~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~----~~~~ 235 (446)
||..+ .|..|.+|| .+.+.+..+|.. +++...+.+++|+|||+|.+|+|+|..|++.+.+|+++.+++. ....
T Consensus 127 tG~~~~~~~~~~i~g~~~~~~~~~v~~~-~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~ 205 (360)
T 3ab1_A 127 AGLGAFEPRKLPQLGNIDHLTGSSVYYA-VKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTA 205 (360)
T ss_dssp CTTCSCCBCCCGGGCCCTTTBTTTEESS-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSCSHHH
T ss_pred cCCCcCCCCCCCCCCchhhCcCceEEEe-cCCHHHcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCCHHHH
Confidence 99644 688888999 777766545543 4555567899999999999999999999999999999998764 1111
Q ss_pred ccCCC---C--CCeeeccceeEEccC-C---cEEec--CC--cEEeecEEEEecCccCCCCCCCC------CCeeeeCCC
Q 013303 236 EKQPG---Y--DNMWLHSMVERANED-G---TVVFR--NG--RVVSADVIMHCTGYKYNYPFLET------NGIVTVDDN 296 (446)
Q Consensus 236 ~~~~~---~--~~v~~~~~v~~i~~~-~---~v~~~--dG--~~~~~D~vi~atG~~~~~~~l~~------~g~i~~~~~ 296 (446)
..+.+ . .++.....|.++..+ + .|.+. +| +++++|.||+|||+.|+.+++.. .|.+.+|+.
T Consensus 206 ~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~ 285 (360)
T 3ab1_A 206 HEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSH 285 (360)
T ss_dssp HSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEETTEEECCTT
T ss_pred HHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccccCeeeecCC
Confidence 11111 1 244555678888654 3 36665 88 56899999999999999887653 345666654
Q ss_pred CcccccccccCCCCCCCeEEecCCCcc----CchhHHHHHHHHHHHHHcC
Q 013303 297 RVGPLYKHVFPPVLAPGLSFVGIPQKV----IPFPFFELQSKWIASVLSG 342 (446)
Q Consensus 297 ~~~~l~~~~~~~~~~p~l~~iG~~~~~----~~~~~~~~qa~~~a~~l~g 342 (446)
.+ ++.|+||++|++... .....+..||+.+|.++.+
T Consensus 286 ~~----------t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~ 325 (360)
T 3ab1_A 286 MK----------TSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLS 325 (360)
T ss_dssp SB----------CSSTTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred Cc----------CCCCCEEEecCccCCCCccceeehhHHHHHHHHHHHHh
Confidence 44 458999999998642 3456677899998888764
No 17
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=100.00 E-value=4.9e-34 Score=272.62 Aligned_cols=276 Identities=24% Similarity=0.262 Sum_probs=210.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEE-EeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVV-YEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v-~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~ 80 (446)
++||+|||||+|||++|..|++.|++|+| +|+ +.+||.|.+....
T Consensus 4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~~~~~--------------------------------- 49 (315)
T 3r9u_A 4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITSSSEI--------------------------------- 49 (315)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGGCSCB---------------------------------
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeeeecee---------------------------------
Confidence 57999999999999999999999999999 999 7789998763110
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC-CceEEEEEeCCCceEEEEEcEEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVV 159 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~-~~~~v~~~~~~~~~~~~~~d~VV 159 (446)
..+|. .+.+.+..++.+|+.++++++++. ++++ +|..+ +..+ +.|.+.+.... ++.||+||
T Consensus 50 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~v~--~~~~-~v~~i-~~~~~~~~~v~~~~~~----~~~~d~lv 111 (315)
T 3r9u_A 50 ENYPG----------VAQVMDGISFMAPWSEQCMRFGLK--HEMV-GVEQI-LKNSDGSFTIKLEGGK----TELAKAVI 111 (315)
T ss_dssp CCSTT----------CCSCBCHHHHHHHHHHHHTTTCCE--EECC-CEEEE-EECTTSCEEEEETTSC----EEEEEEEE
T ss_pred ccCCC----------CCCCCCHHHHHHHHHHHHHHcCcE--EEEE-EEEEE-ecCCCCcEEEEEecCC----EEEeCEEE
Confidence 00111 122346789999999999999987 7777 88888 4431 46875443322 78999999
Q ss_pred EccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc----ccc
Q 013303 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----ETH 235 (446)
Q Consensus 160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~----~~~ 235 (446)
+||| +.|+.|.+||.+.+.+..+|+..+.....+.+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.. ..+
T Consensus 112 lAtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~ 189 (315)
T 3r9u_A 112 VCTG--SAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRAAPSTV 189 (315)
T ss_dssp ECCC--EEECCCCCBTTTTTBTTTEESCHHHHGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBSCHHHH
T ss_pred EeeC--CCCCCCCCCChhhcCCCeEEeeecccccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCCCHHHH
Confidence 9999 7899999999988877888877766656678899999999999999999999999999999987751 112
Q ss_pred ccCCCCC--CeeeccceeEEccCC----cEEec--CCc--EEeecEEEEecCccCCCCCCCC-----------CCeeeeC
Q 013303 236 EKQPGYD--NMWLHSMVERANEDG----TVVFR--NGR--VVSADVIMHCTGYKYNYPFLET-----------NGIVTVD 294 (446)
Q Consensus 236 ~~~~~~~--~v~~~~~v~~i~~~~----~v~~~--dG~--~~~~D~vi~atG~~~~~~~l~~-----------~g~i~~~ 294 (446)
.++.+.. ++..+..|.++..++ .|++. +|+ ++++|.||+|+|+.|+.++++. .|.+.+|
T Consensus 190 ~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd 269 (315)
T 3r9u_A 190 EKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVD 269 (315)
T ss_dssp HHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCC
T ss_pred HHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeC
Confidence 2222222 555677888887654 26666 886 6889999999999999887654 2334444
Q ss_pred CCCcccccccccCCCCCCCeEEecCCCc--cCchhHHHHHHHHHHHHHc
Q 013303 295 DNRVGPLYKHVFPPVLAPGLSFVGIPQK--VIPFPFFELQSKWIASVLS 341 (446)
Q Consensus 295 ~~~~~~l~~~~~~~~~~p~l~~iG~~~~--~~~~~~~~~qa~~~a~~l~ 341 (446)
+..+ ++.|+||++|++.. ......+..||+.+|.++.
T Consensus 270 ~~~~----------t~~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i~ 308 (315)
T 3r9u_A 270 LKMQ----------TSVAGLFAAGDLRKDAPKQVICAAGDGAVAALSAM 308 (315)
T ss_dssp TTCB----------CSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCcc----------cCCCCEEEeecccCCchhhhhhHHhhHHHHHHHHH
Confidence 4333 45899999999863 3456778889999998874
No 18
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=100.00 E-value=5.8e-34 Score=271.79 Aligned_cols=276 Identities=18% Similarity=0.198 Sum_probs=206.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.+||+|||||++|+++|..|++.|++|+|||+ .+||.|..... +.
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~~~~~---------------------------------~~ 45 (310)
T 1fl2_A 1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQILDTVD---------------------------------IE 45 (310)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGGGCCE---------------------------------EC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceeccccc---------------------------------cc
Confidence 36999999999999999999999999999986 57898875210 00
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC--CceEEEEEeCCCceEEEEEcEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES--NKWKVKSRKKDDVVEEETFDAVV 159 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~--~~~~v~~~~~~~~~~~~~~d~VV 159 (446)
.++ ...+.+..++.+++.+++++++++ ++++++|..+++..+ +.|.|++.++. ++.||+||
T Consensus 46 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~~~~~~~v~~~~g~----~~~~~~lv 108 (310)
T 1fl2_A 46 NYI-----------SVPKTEGQKLAGALKVHVDEYDVD--VIDSQSASKLIPAAVEGGLHQIETASGA----VLKARSII 108 (310)
T ss_dssp CBT-----------TBSSEEHHHHHHHHHHHHHTSCEE--EECSCCEEEEECCSSTTCCEEEEETTSC----EEEEEEEE
T ss_pred ccc-----------CcCCCCHHHHHHHHHHHHHHcCCe--EEccCEEEEEEecccCCceEEEEECCCC----EEEeCEEE
Confidence 000 011234578999999999998887 889999999986531 36888876543 68999999
Q ss_pred EccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc---c-cc
Q 013303 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD---E-TH 235 (446)
Q Consensus 160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~---~-~~ 235 (446)
+||| +.|..|++||.+.+.+..+|+........+.+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.. . ..
T Consensus 109 ~AtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~ 186 (310)
T 1fl2_A 109 VATG--AKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQ 186 (310)
T ss_dssp ECCC--EEECCCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHH
T ss_pred ECcC--CCcCCCCCCChhhcccceeEEeccCcHhhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccCccHHHH
Confidence 9999 6788889999887766666655443334457899999999999999999999999999999988751 1 11
Q ss_pred ccCCCCC--CeeeccceeEEccCC----cEEecC---Cc--EEeecEEEEecCccCCCCCCCC------CCeeeeCCCCc
Q 013303 236 EKQPGYD--NMWLHSMVERANEDG----TVVFRN---GR--VVSADVIMHCTGYKYNYPFLET------NGIVTVDDNRV 298 (446)
Q Consensus 236 ~~~~~~~--~v~~~~~v~~i~~~~----~v~~~d---G~--~~~~D~vi~atG~~~~~~~l~~------~g~i~~~~~~~ 298 (446)
+.+.+.. ++.....|.++..++ .|.+.+ |+ ++++|.||+|+|+.|+.+++.. .|.+.+|+..+
T Consensus 187 ~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~l~~~~~g~i~vd~~~~ 266 (310)
T 1fl2_A 187 DKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCE 266 (310)
T ss_dssp HHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTTCB
T ss_pred HHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhccccccCCCcEEcCCCCc
Confidence 2222222 455566888887542 266764 54 5789999999999999887753 34454554433
Q ss_pred ccccccccCCCCCCCeEEecCCCccC--chhHHHHHHHHHHHHHc
Q 013303 299 GPLYKHVFPPVLAPGLSFVGIPQKVI--PFPFFELQSKWIASVLS 341 (446)
Q Consensus 299 ~~l~~~~~~~~~~p~l~~iG~~~~~~--~~~~~~~qa~~~a~~l~ 341 (446)
++.|+||++|++.... ....+..||+.+|.++.
T Consensus 267 ----------t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 301 (310)
T 1fl2_A 267 ----------TNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAF 301 (310)
T ss_dssp ----------CSSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHH
T ss_pred ----------cCCCCEEEeecccCCcchhhhhhHhhHHHHHHHHH
Confidence 4589999999987543 45677889999888775
No 19
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=100.00 E-value=1.9e-33 Score=269.38 Aligned_cols=281 Identities=18% Similarity=0.198 Sum_probs=204.1
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
+||+|||||++|+++|..|++.|++|+|||+ ..+||.|...... ..++.
T Consensus 17 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~~~~~------------------------------~~~~~ 65 (319)
T 3cty_A 17 FDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAEAPLV------------------------------ENYLG 65 (319)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGGCSCB------------------------------CCBTT
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccccchh------------------------------hhcCC
Confidence 6899999999999999999999999999999 5788888753100 00000
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt 162 (446)
+ ......++.+++.++++++++. +++ .+|..++... +.|+|.+ ++. ++.||+||+||
T Consensus 66 ~--------------~~~~~~~~~~~~~~~~~~~~v~--~~~-~~v~~i~~~~-~~~~v~~-~~~----~~~~~~li~At 122 (319)
T 3cty_A 66 F--------------KSIVGSELAKLFADHAANYAKI--REG-VEVRSIKKTQ-GGFDIET-NDD----TYHAKYVIITT 122 (319)
T ss_dssp B--------------SSBCHHHHHHHHHHHHHTTSEE--EET-CCEEEEEEET-TEEEEEE-SSS----EEEEEEEEECC
T ss_pred C--------------cccCHHHHHHHHHHHHHHcCCE--EEE-eeEEEEEEeC-CEEEEEE-CCC----EEEeCEEEECC
Confidence 1 1234578889999999988876 666 7899998765 6688766 322 68999999999
Q ss_pred CCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc----cccccC
Q 013303 163 GHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----ETHEKQ 238 (446)
Q Consensus 163 G~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~----~~~~~~ 238 (446)
| +.|+.|.+||.+.+.+..+|.....+...+.+++|+|||+|.+|+|+|..|++.+.+|+++++.+.. ...+.+
T Consensus 123 G--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~~~~l~~~l 200 (319)
T 3cty_A 123 G--TTHKHLGVKGESEYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCENAYVQEI 200 (319)
T ss_dssp C--EEECCCCCBTTTTTBTTTEESCHHHHGGGGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCSCHHHHHHH
T ss_pred C--CCcccCCCCChHHhCCceEEEEEecchhhcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCCCHHHHHHH
Confidence 9 7788999999877655556654433333457899999999999999999999999999999987641 111112
Q ss_pred CC-CCCeeeccceeEEccCC----cEEec---CCc--EEeecEEEEecCccCCCCCCCCCCeeeeCCCCcccccccccCC
Q 013303 239 PG-YDNMWLHSMVERANEDG----TVVFR---NGR--VVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPP 308 (446)
Q Consensus 239 ~~-~~~v~~~~~v~~i~~~~----~v~~~---dG~--~~~~D~vi~atG~~~~~~~l~~~g~i~~~~~~~~~l~~~~~~~ 308 (446)
.+ ..++.....|.++..++ .|.+. +|+ ++++|.||+|||+.|+.+++...| +.+++........+ +.
T Consensus 201 ~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g-l~~~~~g~i~vd~~-~~- 277 (319)
T 3cty_A 201 KKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSG-VKLDERGYIVVDSR-QR- 277 (319)
T ss_dssp HHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSC-CCBCTTSCBCCCTT-CB-
T ss_pred hcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhcc-ccccCCccEeCCCC-Cc-
Confidence 22 22566677888887653 26675 676 588999999999999998876433 33332221111111 23
Q ss_pred CCCCCeEEecCCCcc--CchhHHHHHHHHHHHHHcC
Q 013303 309 VLAPGLSFVGIPQKV--IPFPFFELQSKWIASVLSG 342 (446)
Q Consensus 309 ~~~p~l~~iG~~~~~--~~~~~~~~qa~~~a~~l~g 342 (446)
++.|+||++|++... .....+..||+.+|.++..
T Consensus 278 t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 313 (319)
T 3cty_A 278 TSVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLYS 313 (319)
T ss_dssp CSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeecccCcchhhHHHHHHHHHHHHHHHHH
Confidence 458999999998754 4567788899999888753
No 20
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.9e-33 Score=271.36 Aligned_cols=282 Identities=20% Similarity=0.229 Sum_probs=204.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
++||+|||||++|+++|..|++.|++|+|||+. .+||.|.+.... ..++
T Consensus 14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~------------------------------~~~~ 62 (335)
T 2a87_A 14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMTTTDV------------------------------ENYP 62 (335)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGSCSCB------------------------------CCST
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceeccchh------------------------------hhcC
Confidence 469999999999999999999999999999975 788888653100 0011
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEE-EEEeCCCceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKV-KSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v-~~~~~~~~~~~~~~d~VVv 160 (446)
.++ ......++.+++.++++++++. +++++ |.+++. . +.|+| .+.++. ++.||+||+
T Consensus 63 ~~~-------------~~~~~~~~~~~l~~~~~~~~v~--~~~~~-v~~i~~-~-~~~~v~~~~~g~----~~~~d~lvi 120 (335)
T 2a87_A 63 GFR-------------NGITGPELMDEMREQALRFGAD--LRMED-VESVSL-H-GPLKSVVTADGQ----THRARAVIL 120 (335)
T ss_dssp TCT-------------TCBCHHHHHHHHHHHHHHTTCE--EECCC-EEEEEC-S-SSSEEEEETTSC----EEEEEEEEE
T ss_pred CCC-------------CCCCHHHHHHHHHHHHHHcCCE--EEEee-EEEEEe-C-CcEEEEEeCCCC----EEEeCEEEE
Confidence 111 1134578999999999999887 88876 888887 3 67888 554432 789999999
Q ss_pred ccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc---ccc-c
Q 013303 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD---ETH-E 236 (446)
Q Consensus 161 AtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~---~~~-~ 236 (446)
||| +.|..|++||.+.|.+..+|+..+.....+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++.. +.+ .
T Consensus 121 AtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~~~~~~~ 198 (335)
T 2a87_A 121 AMG--AAARYLQVPGEQELLGRGVSSCATCDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRASKIMLD 198 (335)
T ss_dssp CCC--EEECCCCCTHHHHTBTTTEESCHHHHGGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSSCTTHHH
T ss_pred CCC--CCccCCCCCchHhccCCceEEeeccchhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCccHHHHH
Confidence 999 7888999999876666666765443333457899999999999999999999999999999987651 111 1
Q ss_pred cCCCCC--CeeeccceeEEccCCc---EEec---CC--cEEeecEEEEecCccCCCCCCCCCCeeeeCCCCccccccccc
Q 013303 237 KQPGYD--NMWLHSMVERANEDGT---VVFR---NG--RVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVF 306 (446)
Q Consensus 237 ~~~~~~--~v~~~~~v~~i~~~~~---v~~~---dG--~~~~~D~vi~atG~~~~~~~l~~~g~i~~~~~~~~~l~~~~~ 306 (446)
++.+.. ++..+..|.++..++. |.+. +| +++++|.||+|+|++|+.++++. + +..|+........+.+
T Consensus 199 ~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~-l~~~~~G~i~vd~~~~ 276 (335)
T 2a87_A 199 RARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVRE-A-IDVDPDGYVLVQGRTT 276 (335)
T ss_dssp HHHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTBT-T-BCBCTTSCBCCSTTSS
T ss_pred HHhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEccCCccChhHhhc-c-cccCCCccEEeCCCCC
Confidence 221222 4555678888876553 7775 45 46889999999999999988752 2 3333222212222222
Q ss_pred CCCCCCCeEEecCCCcc--CchhHHHHHHHHHHHHHc
Q 013303 307 PPVLAPGLSFVGIPQKV--IPFPFFELQSKWIASVLS 341 (446)
Q Consensus 307 ~~~~~p~l~~iG~~~~~--~~~~~~~~qa~~~a~~l~ 341 (446)
. ++.|+||++|++... .....+..||+.+|.++.
T Consensus 277 ~-t~~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~ 312 (335)
T 2a87_A 277 S-TSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAE 312 (335)
T ss_dssp B-CSSTTEEECGGGTCCSCCCHHHHHHHHHHHHHHHH
T ss_pred c-cCCCCEEEeeecCCccHHHHHHHHHhHHHHHHHHH
Confidence 2 458999999988654 345667889998888774
No 21
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.5e-33 Score=266.76 Aligned_cols=274 Identities=19% Similarity=0.199 Sum_probs=189.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.+||+||||||||++||..|++.|++|+|||+ ..+||+|.+. +|.+ .++
T Consensus 6 ~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~-~~~gG~~~~~--------~~i~----------------------~~p 54 (312)
T 4gcm_A 6 DFDIAIIGAGPAGMTAAVYASRANLKTVMIER-GIPGGQMANT--------EEVE----------------------NFP 54 (312)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTGGGGGC--------SCBC----------------------CST
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCCeeecc--------cccC----------------------CcC
Confidence 47999999999999999999999999999998 4689988754 1111 011
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.+ ......++.........+.+.. +..+..+...... . ..+...++ .++.||+||||
T Consensus 55 ~~--------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~-~~~~~~~~----~~~~~d~liiA 111 (312)
T 4gcm_A 55 GF--------------EMITGPDLSTKMFEHAKKFGAV--YQYGDIKSVEDKG--E-YKVINFGN----KELTAKAVIIA 111 (312)
T ss_dssp TC--------------SSBCHHHHHHHHHHHHHHTTCE--EEECCCCEEEECS--S-CEEEECSS----CEEEEEEEEEC
T ss_pred Cc--------------cccchHHHHHHHHHHHhhcccc--ccceeeeeeeeee--c-ceeeccCC----eEEEeceeEEc
Confidence 11 1234467777777777776654 5555554444332 2 23333232 37999999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc--c--cccc
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD--E--THEK 237 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~--~--~~~~ 237 (446)
|| +.|+.|++||.+.+.+..+++....+...+++|+|+|||+|++|+|+|..|++.|.+|++++|.+.. . ...+
T Consensus 112 tG--s~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~ 189 (312)
T 4gcm_A 112 TG--AEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDR 189 (312)
T ss_dssp CC--EEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHHHH
T ss_pred cc--CccCcCCCCChhhhCCccEEeeeccCccccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcchhHHHH
Confidence 99 8999999999988877777776666666678999999999999999999999999999999998751 0 0000
Q ss_pred CCCCCCeee--ccceeEEcc-CCc------EEec--CCcEEeecEEEEecCccCCCCCCC------CCCeeeeCCCCccc
Q 013303 238 QPGYDNMWL--HSMVERANE-DGT------VVFR--NGRVVSADVIMHCTGYKYNYPFLE------TNGIVTVDDNRVGP 300 (446)
Q Consensus 238 ~~~~~~v~~--~~~v~~i~~-~~~------v~~~--dG~~~~~D~vi~atG~~~~~~~l~------~~g~i~~~~~~~~~ 300 (446)
......+.. ...+..... +.. .... ++..+++|.|++++|..|+..++. +.|.|.+|++++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~g~~~~~G~I~vd~~~~-- 267 (312)
T 4gcm_A 190 AFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMT-- 267 (312)
T ss_dssp HHHCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGGGGTCBCTTSCBCCCTTSB--
T ss_pred HHHhcCcceeeecceeeeeccccccccceeeeecCCceeEEeeeeEEeecCCCcCchhHHhcceecCCCeEeeCCCCc--
Confidence 001111111 111111111 100 1112 234688999999999999987653 456677777766
Q ss_pred ccccccCCCCCCCeEEecCCCcc--CchhHHHHHHHHHHHHHc
Q 013303 301 LYKHVFPPVLAPGLSFVGIPQKV--IPFPFFELQSKWIASVLS 341 (446)
Q Consensus 301 l~~~~~~~~~~p~l~~iG~~~~~--~~~~~~~~qa~~~a~~l~ 341 (446)
|+.|+||++|++... .....+..|++.+|.++.
T Consensus 268 --------Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i~ 302 (312)
T 4gcm_A 268 --------TSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAA 302 (312)
T ss_dssp --------CSSTTEEECSTTBSCSCCSHHHHHHHHHHHHHHHH
T ss_pred --------cCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHH
Confidence 679999999998642 345678889999998764
No 22
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=100.00 E-value=3.5e-33 Score=267.56 Aligned_cols=280 Identities=17% Similarity=0.206 Sum_probs=203.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
++||+|||||++|+++|..|++.|++|+|||+ ..+||.|.+.... ..++
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~~~~~------------------------------~~~~ 53 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLTTTTEV------------------------------ENWP 53 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECC-SSTTGGGGGCSBC------------------------------CCST
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEcc-CCCCceEecchhh------------------------------hhCC
Confidence 46999999999999999999999999999997 4788888653100 0011
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.+ +....+.++.+++.++++++++. +++++ |..++... +.|+| +.++. ++.||+||+|
T Consensus 54 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-v~~i~~~~-~~~~v-~~~~~----~~~~~~lv~A 111 (320)
T 1trb_A 54 GD-------------PNDLTGPLLMERMHEHATKFETE--IIFDH-INKVDLQN-RPFRL-NGDNG----EYTCDALIIA 111 (320)
T ss_dssp TC-------------CSSCBHHHHHHHHHHHHHHTTCE--EECCC-EEEEECSS-SSEEE-EESSC----EEEEEEEEEC
T ss_pred CC-------------CCCCCHHHHHHHHHHHHHHCCCE--EEEee-eeEEEecC-CEEEE-EeCCC----EEEcCEEEEC
Confidence 11 11234578899999999999987 77775 88988765 67888 44443 7899999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc---ccc---
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD---ETH--- 235 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~---~~~--- 235 (446)
|| +.|..|.+||.+.+.+..+|+..+.+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.+++.. ..+
T Consensus 112 tG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~ 189 (320)
T 1trb_A 112 TG--ASARYLGLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKR 189 (320)
T ss_dssp CC--EEECCCCCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCHHHHHH
T ss_pred CC--CCcCCCCCCChHHhCCceeEecccCCccccCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccccCHHHHHH
Confidence 99 6788899998776655566665444433467899999999999999999999999999999987641 111
Q ss_pred --ccCCCCC-CeeeccceeEEccCC-c---EEecC----C--cEEeecEEEEecCccCCCCCCCC-----CCeeeeCCCC
Q 013303 236 --EKQPGYD-NMWLHSMVERANEDG-T---VVFRN----G--RVVSADVIMHCTGYKYNYPFLET-----NGIVTVDDNR 297 (446)
Q Consensus 236 --~~~~~~~-~v~~~~~v~~i~~~~-~---v~~~d----G--~~~~~D~vi~atG~~~~~~~l~~-----~g~i~~~~~~ 297 (446)
+.+.+.+ ++.....|.++..++ . |.+.+ | +++++|.||+|+|++|+.++++. .|.+.+|+..
T Consensus 190 l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~~~l~~~~G~i~vd~~~ 269 (320)
T 1trb_A 190 LMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGI 269 (320)
T ss_dssp HHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGTTTSCEETTEECCCCSS
T ss_pred HHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhcccccccCceEEECCCc
Confidence 1111222 455667888887654 2 77765 5 46899999999999999888752 3344444442
Q ss_pred cccccccccCCCCCCCeEEecCCCcc--CchhHHHHHHHHHHHHHc
Q 013303 298 VGPLYKHVFPPVLAPGLSFVGIPQKV--IPFPFFELQSKWIASVLS 341 (446)
Q Consensus 298 ~~~l~~~~~~~~~~p~l~~iG~~~~~--~~~~~~~~qa~~~a~~l~ 341 (446)
+.. ... ++.|+||++|++... .....+..||+.+|.++.
T Consensus 270 ~~~----~~~-t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 310 (320)
T 1trb_A 270 HGN----ATQ-TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAE 310 (320)
T ss_dssp SSC----TTB-CSSTTEEECGGGGCSSSCCHHHHHHHHHHHHHHHH
T ss_pred ccc----ccc-CCCCCEEEcccccCCcchhhhhhhccHHHHHHHHH
Confidence 100 012 458999999988654 345667788888887764
No 23
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=100.00 E-value=6.7e-33 Score=267.13 Aligned_cols=282 Identities=17% Similarity=0.190 Sum_probs=202.4
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEee----CCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEK----GEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~----~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~ 78 (446)
+||+|||||++|+++|..|++.|++|+|||+ ...+||.|..... . .
T Consensus 9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~------------------~------------~ 58 (333)
T 1vdc_A 9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTD------------------V------------E 58 (333)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSE------------------E------------C
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccc------------------c------------c
Confidence 6899999999999999999999999999998 5567776654210 0 0
Q ss_pred ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (446)
Q Consensus 79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V 158 (446)
.++.+| ......++.+++.++++++++. +++++ |..++... +.|+|++ ++ .++.||+|
T Consensus 59 ~~~~~~-------------~~~~~~~~~~~l~~~~~~~gv~--~~~~~-v~~i~~~~-~~~~v~~-~~----~~~~~~~v 116 (333)
T 1vdc_A 59 NFPGFP-------------EGILGVELTDKFRKQSERFGTT--IFTET-VTKVDFSS-KPFKLFT-DS----KAILADAV 116 (333)
T ss_dssp CSTTCT-------------TCEEHHHHHHHHHHHHHHTTCE--EECCC-CCEEECSS-SSEEEEC-SS----EEEEEEEE
T ss_pred cCCCCc-------------cCCCHHHHHHHHHHHHHHCCCE--EEEeE-EEEEEEcC-CEEEEEE-CC----cEEEcCEE
Confidence 011111 1124578899999999999887 78776 88998765 6788877 32 37899999
Q ss_pred EEccCCCCCCccCCCCCCCC----CCccEEEeeecCCCCC--CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc
Q 013303 159 VVCNGHFSVPRLAQVPGIDS----WPGKQMHSHNYRIPNP--FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD 232 (446)
Q Consensus 159 VvAtG~~s~p~~p~i~G~~~----~~g~~~hs~~~~~~~~--~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~ 232 (446)
|+||| +.|..|++||.+. |.+..+|+..+..... +.+++|+|||+|.+|+|+|..|++.+.+|+++.+++..
T Consensus 117 v~A~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 194 (333)
T 1vdc_A 117 ILAIG--AVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF 194 (333)
T ss_dssp EECCC--EEECCCCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred EECCC--CCcCCCCCCCccccccccccCcEEEeccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcC
Confidence 99999 6788899999876 5556666654433333 57899999999999999999999999999999998751
Q ss_pred ---ccc-ccCCCCC--CeeeccceeEEccCC---c---EEec---CC--cEEeecEEEEecCccCCCCCCCCCCeeeeCC
Q 013303 233 ---ETH-EKQPGYD--NMWLHSMVERANEDG---T---VVFR---NG--RVVSADVIMHCTGYKYNYPFLETNGIVTVDD 295 (446)
Q Consensus 233 ---~~~-~~~~~~~--~v~~~~~v~~i~~~~---~---v~~~---dG--~~~~~D~vi~atG~~~~~~~l~~~g~i~~~~ 295 (446)
..+ .++.+.. ++..+..|.++..++ . |.+. +| +++++|.||+|+|++|+.++++. + +..++
T Consensus 195 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~-l~~~~ 272 (333)
T 1vdc_A 195 RASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDG-G-VELDS 272 (333)
T ss_dssp CSCHHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTT-S-SCBCT
T ss_pred CccHHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHhhc-c-ccccC
Confidence 111 1222222 455567888887654 2 7776 46 46889999999999999988752 2 33332
Q ss_pred CCcccccccccCCCCCCCeEEecCCCcc--CchhHHHHHHHHHHHHHc
Q 013303 296 NRVGPLYKHVFPPVLAPGLSFVGIPQKV--IPFPFFELQSKWIASVLS 341 (446)
Q Consensus 296 ~~~~~l~~~~~~~~~~p~l~~iG~~~~~--~~~~~~~~qa~~~a~~l~ 341 (446)
+.......+.+. ++.|+||++|++... .....+..||+.+|.++.
T Consensus 273 ~G~i~vd~~~~~-t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 319 (333)
T 1vdc_A 273 DGYVVTKPGTTQ-TSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAE 319 (333)
T ss_dssp TSCBCCCTTSCB-CSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEechhhcc-cCCCCEEEeeeccCCCchhHHHHHHhHHHHHHHHH
Confidence 222112222222 458999999998654 345667788888777654
No 24
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=100.00 E-value=4.2e-33 Score=266.28 Aligned_cols=279 Identities=17% Similarity=0.193 Sum_probs=189.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
++||+||||||||++||..|++.|++|+|||+. ..||.+.. ||.|.+.. ..| ++
T Consensus 4 ~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~-~~gg~~~~---------G~~~~~~~---------i~~-------~~ 57 (314)
T 4a5l_A 4 IHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGF-MAGGVAAG---------GQLTTTTI---------IEN-------FP 57 (314)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS-SGGGCCTT---------CGGGGSSE---------ECC-------ST
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCcccC---------CCcCChHH---------hhh-------cc
Confidence 479999999999999999999999999999985 46665543 33322111 111 11
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.+ +...+..++.+++.+.+++++.. +. ...|..+.... ..+.+.+.++ .++.||+||+|
T Consensus 58 g~-------------~~~i~~~~l~~~~~~~~~~~~~~--~~-~~~v~~~~~~~-~~~~~~~~~~----~~~~~~~liiA 116 (314)
T 4a5l_A 58 GF-------------PNGIDGNELMMNMRTQSEKYGTT--II-TETIDHVDFST-QPFKLFTEEG----KEVLTKSVIIA 116 (314)
T ss_dssp TC-------------TTCEEHHHHHHHHHHHHHHTTCE--EE-CCCEEEEECSS-SSEEEEETTC----CEEEEEEEEEC
T ss_pred CC-------------cccCCHHHHHHHHHHHHhhcCcE--EE-EeEEEEeecCC-CceEEEECCC----eEEEEeEEEEc
Confidence 11 22345678899999999998875 44 44566665544 4455555443 37999999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecCCC--CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCccc----c
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP--NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADET----H 235 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~--~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~----~ 235 (446)
|| +.|+.|++||.+.+.+..++...+... ..+++++|+|||+|.+|+|+|..|++.|++|++++|...... .
T Consensus 117 TG--~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~~~~~~ 194 (314)
T 4a5l_A 117 TG--ATAKRMHVPGEDKYWQNGVSACAICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRASKTMQ 194 (314)
T ss_dssp CC--EEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHH
T ss_pred cc--ccccccCCCccccccccceeeehhhhhhhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccccchhh
Confidence 99 899999999987665555665554332 236789999999999999999999999999999998765110 0
Q ss_pred ccC-CC-CCCeeeccceeEEccCC----cEEe-----cCCcEEeecEEEEecCccCCCCCCCC------CCeeeeCCCCc
Q 013303 236 EKQ-PG-YDNMWLHSMVERANEDG----TVVF-----RNGRVVSADVIMHCTGYKYNYPFLET------NGIVTVDDNRV 298 (446)
Q Consensus 236 ~~~-~~-~~~v~~~~~v~~i~~~~----~v~~-----~dG~~~~~D~vi~atG~~~~~~~l~~------~g~i~~~~~~~ 298 (446)
.+. .. .........+.++.... .+.+ .+++++++|.|++|+|++|+..++.. .|.+ +|++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~~~~~~~~G~i-v~~~~~ 273 (314)
T 4a5l_A 195 ERVLNHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQVKTADDGYI-LTEGPK 273 (314)
T ss_dssp HHHHTCTTEEEECSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCB-CCBTTB
T ss_pred hhhhcccceeeEeeeeeEEEEeeeeccceeEEeecccccceeeccccceEecccccChhHhcccceEcCCeeE-eCCCCc
Confidence 000 11 11222233333443221 1333 34567899999999999999988753 2322 344333
Q ss_pred ccccccccCCCCCCCeEEecCCCccC--chhHHHHHHHHHHHHH
Q 013303 299 GPLYKHVFPPVLAPGLSFVGIPQKVI--PFPFFELQSKWIASVL 340 (446)
Q Consensus 299 ~~l~~~~~~~~~~p~l~~iG~~~~~~--~~~~~~~qa~~~a~~l 340 (446)
|+.|+||++|++...+ ....+..|++.+|..+
T Consensus 274 ----------Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~ 307 (314)
T 4a5l_A 274 ----------TSVDGVFACGDVCDRVYRQAIVAAGSGCMAALSC 307 (314)
T ss_dssp ----------CSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHH
T ss_pred ----------cCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHH
Confidence 6699999999986543 3455667887777544
No 25
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=100.00 E-value=3.3e-32 Score=275.87 Aligned_cols=204 Identities=20% Similarity=0.259 Sum_probs=143.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcE--------------EEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTV--------------VVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYK 67 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v--------------~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~ 67 (446)
.+||+||||||+||++|..|.+.|... +.+|+.+.++ |+... ..|+..+ ..+...
T Consensus 39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~--Wh~g~--------~~p~~~~-q~~fl~ 107 (501)
T 4b63_A 39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFA--WHSGM--------LVPGSKM-QISFIK 107 (501)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCC--SSGGG--------CCTTCBC-SSCGGG
T ss_pred cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCC--cCCCC--------CCCCccc-cccchh
Confidence 369999999999999999998865544 4455544433 33210 0011000 001111
Q ss_pred ce-eecCCCCCcccCCC--------CCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC--
Q 013303 68 SL-RVNLPRELMGFQAY--------PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-- 136 (446)
Q Consensus 68 ~l-~~~~~~~~~~~~d~--------~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~-- 136 (446)
.| ....|...++|..| +|.. ....||++.|+.+||+.++++++.. |+|+++|++|++...
T Consensus 108 Dlvtl~~P~s~~sf~~yl~~~~rl~~f~~-------~~~~~p~r~E~~~Yl~~~A~~~~~~--vrf~~~V~~v~~~~~~~ 178 (501)
T 4b63_A 108 DLATLRDPRSSFTFLNYLHQKGRLIHFTN-------LSTFLPARLEFEDYMRWCAQQFSDV--VAYGEEVVEVIPGKSDP 178 (501)
T ss_dssp SSSTTTCTTCTTSHHHHHHHHTCHHHHHT-------TCCSCCBHHHHHHHHHHHHHTTGGG--EEESEEEEEEEEECSST
T ss_pred hhccccCCCCccchHHHHHHhCCccCCcc-------ccCCCCCHHHHHHHHHHHHHHcCCc--eEcceEEEeeccccccc
Confidence 11 11122222222211 1211 2567899999999999999998755 999999999998653
Q ss_pred -----CceEEEEEeCC-CceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCC------CCCCCCCEEEEEe
Q 013303 137 -----NKWKVKSRKKD-DVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRI------PNPFQDQVVILIG 204 (446)
Q Consensus 137 -----~~~~v~~~~~~-~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~------~~~~~~k~VvVVG 204 (446)
+.|+|++.++. ++..++.++.||+||| ..|.+|. ...|.|.++|+.+|.. +..++||+|+|||
T Consensus 179 ~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG--~~P~iP~---~~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG 253 (501)
T 4b63_A 179 SSSVVDFFTVRSRNVETGEISARRTRKVVIAIG--GTAKMPS---GLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLG 253 (501)
T ss_dssp TSSCBCEEEEEEEETTTCCEEEEEEEEEEECCC--CEECCCT---TSCCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEEC
T ss_pred cccccceEEEEEecCCCceEEEEEeCEEEECcC--CCCCCCC---CCCCCcceeeccccccchhhccccccCCcEEEEEC
Confidence 25999999875 4667899999999999 5666554 4457789999999864 5678999999999
Q ss_pred cCCcHHHHHHHHhcc--CCEEEEEEecC
Q 013303 205 HYASGLDIKRDLAGF--AKEVHIASRSV 230 (446)
Q Consensus 205 ~G~sg~eia~~l~~~--~~~V~l~~r~~ 230 (446)
+|.||+|++.+|++. +.+|+++.|++
T Consensus 254 ~G~SA~ei~~~L~~~~~~~~v~~~~R~~ 281 (501)
T 4b63_A 254 SGQSAAEIFHDLQKRYPNSRTTLIMRDS 281 (501)
T ss_dssp CSHHHHHHHHHHHHHSTTCEEEEECSSS
T ss_pred CcHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 999999999999865 78999999986
No 26
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=100.00 E-value=4.1e-32 Score=276.67 Aligned_cols=276 Identities=18% Similarity=0.212 Sum_probs=208.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.+||+||||||||+++|..|++.|++|+|+|+ .+||.|...... ..+.
T Consensus 212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~~~~~~------------------------------~~~~ 259 (521)
T 1hyu_A 212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVLDTVDI------------------------------ENYI 259 (521)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGTTCSCB------------------------------CCBT
T ss_pred cccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCcccccccc------------------------------cccC
Confidence 46899999999999999999999999999986 579988753100 0010
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC--CceEEEEEeCCCceEEEEEcEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES--NKWKVKSRKKDDVVEEETFDAVV 159 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~--~~~~v~~~~~~~~~~~~~~d~VV 159 (446)
.+ .+....++.+++.++++++++. ++++++|..+++..+ +.|+|++.++. ++.||+||
T Consensus 260 ~~--------------~~~~~~~l~~~l~~~~~~~gv~--v~~~~~v~~i~~~~~~~~~~~V~~~~g~----~~~~d~vV 319 (521)
T 1hyu_A 260 SV--------------PKTEGQKLAGALKAHVSDYDVD--VIDSQSASKLVPAATEGGLHQIETASGA----VLKARSII 319 (521)
T ss_dssp TB--------------SSBCHHHHHHHHHHHHHTSCEE--EECSCCEEEEECCSSTTSCEEEEETTSC----EEEEEEEE
T ss_pred CC--------------CCCCHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEeccCCCceEEEEECCCC----EEEcCEEE
Confidence 11 1235678999999999999987 899999999986431 46888876553 78999999
Q ss_pred EccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC---cc-cc
Q 013303 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---DE-TH 235 (446)
Q Consensus 160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~---~~-~~ 235 (446)
+||| +.|+.|.+||.+.|.+..++.....+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.+.+. +. ..
T Consensus 320 lAtG--~~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~~~~l~ 397 (521)
T 1hyu_A 320 IATG--AKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQ 397 (521)
T ss_dssp ECCC--EEECCCCCTTTTTTTTTTEECCTTCCGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCSCHHHH
T ss_pred ECCC--CCcCCCCCCChhhhcCceEEEeecCchhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCcCHHHH
Confidence 9999 678889999998887766676555444456899999999999999999999999999999998775 11 11
Q ss_pred ccCCCCC--CeeeccceeEEccCC----cEEecC---Cc--EEeecEEEEecCccCCCCCCCC------CCeeeeCCCCc
Q 013303 236 EKQPGYD--NMWLHSMVERANEDG----TVVFRN---GR--VVSADVIMHCTGYKYNYPFLET------NGIVTVDDNRV 298 (446)
Q Consensus 236 ~~~~~~~--~v~~~~~v~~i~~~~----~v~~~d---G~--~~~~D~vi~atG~~~~~~~l~~------~g~i~~~~~~~ 298 (446)
.++.+.. ++..+..+.++..++ .+.+.| |+ ++++|.||+|+|+.|+.+++.. .|.|.+|+..+
T Consensus 398 ~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~l~~~~~G~I~Vd~~~~ 477 (521)
T 1hyu_A 398 DKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKCE 477 (521)
T ss_dssp HHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTTTSCBCTTSCBCCCTTCB
T ss_pred HHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhhhhccCCCCcEEeCCCCC
Confidence 2233322 455667888887642 256654 54 5789999999999999888753 34555555444
Q ss_pred ccccccccCCCCCCCeEEecCCCccC--chhHHHHHHHHHHHHHc
Q 013303 299 GPLYKHVFPPVLAPGLSFVGIPQKVI--PFPFFELQSKWIASVLS 341 (446)
Q Consensus 299 ~~l~~~~~~~~~~p~l~~iG~~~~~~--~~~~~~~qa~~~a~~l~ 341 (446)
++.|+||++|++.... ....+..||..+|.++.
T Consensus 478 ----------ts~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~ 512 (521)
T 1hyu_A 478 ----------TSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAF 512 (521)
T ss_dssp ----------CSSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCCEEEeecccCCCcceeeehHHhHHHHHHHHH
Confidence 4589999999987543 45677888888887764
No 27
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=100.00 E-value=3.4e-32 Score=273.09 Aligned_cols=276 Identities=15% Similarity=0.112 Sum_probs=191.0
Q ss_pred CCCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~ 78 (446)
|++||+|||||+||+++|..|++. |.+|+|||+++.+|...... ..|. ..
T Consensus 1 M~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~-------------------~~~~------~~--- 52 (452)
T 3oc4_A 1 MSLKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGL-------------------SAYF------NH--- 52 (452)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC------------------------------------
T ss_pred CCCCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccc-------------------hhhh------cC---
Confidence 568999999999999999999998 89999999988765211000 0000 00
Q ss_pred ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (446)
Q Consensus 79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V 158 (446)
.+....++..+..+..+++++. ++++++|+++++.. ..+.+. . .....++.||+|
T Consensus 53 -------------------~~~~~~~~~~~~~~~~~~~gi~--~~~~~~V~~id~~~-~~v~v~--~-~~~~~~~~~d~l 107 (452)
T 3oc4_A 53 -------------------TINELHEARYITEEELRRQKIQ--LLLNREVVAMDVEN-QLIAWT--R-KEEQQWYSYDKL 107 (452)
T ss_dssp ---------------------------CCCCHHHHHHTTEE--EECSCEEEEEETTT-TEEEEE--E-TTEEEEEECSEE
T ss_pred -------------------CCCCHHHhhcCCHHHHHHCCCE--EEECCEEEEEECCC-CEEEEE--e-cCceEEEEcCEE
Confidence 0000011111123344566776 78899999998765 555554 1 123457999999
Q ss_pred EEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCC-----CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc-
Q 013303 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNP-----FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD- 232 (446)
Q Consensus 159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~-----~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~- 232 (446)
|+||| +.|..|++||.+. ..++++..+.+... ..+++|+|||+|.+|+|+|..+++.|.+|+++.+.+..
T Consensus 108 viAtG--~~p~~p~i~g~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l 183 (452)
T 3oc4_A 108 ILATG--ASQFSTQIRGSQT--EKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLL 183 (452)
T ss_dssp EECCC--CCBCCCCCBTTTC--TTEEEGGGCC----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred EECCC--cccCCCCCCCCCC--CCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccc
Confidence 99999 8999999999864 34566655544432 25799999999999999999999999999999987641
Q ss_pred -----c----cc-ccCCCCC-CeeeccceeEEcc-CCc--EEecCCcEEeecEEEEecCccCCCCCCCC------CCeee
Q 013303 233 -----E----TH-EKQPGYD-NMWLHSMVERANE-DGT--VVFRNGRVVSADVIMHCTGYKYNYPFLET------NGIVT 292 (446)
Q Consensus 233 -----~----~~-~~~~~~~-~v~~~~~v~~i~~-~~~--v~~~dG~~~~~D~vi~atG~~~~~~~l~~------~g~i~ 292 (446)
. .+ +.+.+.+ ++..+..|+++.. ++. |.+++| ++++|.||+|||++|+.++++. .|.|.
T Consensus 184 ~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~p~~~~l~~~~~~~~~g~i~ 262 (452)
T 3oc4_A 184 PKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNLHPQLAYLDKKIQRNLDQTIA 262 (452)
T ss_dssp TTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCCBCCCSSCCTTSCBCTTSCBC
T ss_pred cccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCCCCChHHHHhhhccCCCCCEE
Confidence 0 11 1112222 5666788999873 333 556666 8999999999999999988753 34455
Q ss_pred eCCCCcccccccccCCCCCCCeEEecCCCcc-----------CchhHHHHHHHHHHHHHcCCC
Q 013303 293 VDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-----------IPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~~~~qa~~~a~~l~g~~ 344 (446)
+|++++ ++.|+||++|++... ...+.+..||+.+|+++.|..
T Consensus 263 vd~~~~----------t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~ 315 (452)
T 3oc4_A 263 VDAYLQ----------TSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKT 315 (452)
T ss_dssp CCTTCB----------CSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSSSCC
T ss_pred ECcCcc----------CCCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHhcCCC
Confidence 555544 458999999988643 256778999999999999863
No 28
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=100.00 E-value=4.8e-33 Score=282.23 Aligned_cols=298 Identities=20% Similarity=0.219 Sum_probs=196.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~ 80 (446)
++||+||||||||++||..|++.|++|+|||+.+.+||+|.+. ||.|++.++... .+..+......
T Consensus 25 ~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~--------gciP~k~l~~~~~~~~~~~~~~~~----- 91 (491)
T 3urh_A 25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNV--------GCIPSKALLHASEMFHQAQHGLEA----- 91 (491)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHHHSSGG-----
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccc--------cchhhHHHHHHHHHHHHHHhhHhh-----
Confidence 4799999999999999999999999999999999999999875 666655433222 11111111111
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHH-----------HHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLR-----------YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~-----------yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~ 149 (446)
+.+... ........+.. .+....++.++. +..+. +..+ +.+.+.+...++.
T Consensus 92 --~g~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~-~~~~-----~~~~~~v~~~~g~ 153 (491)
T 3urh_A 92 --LGVEVA--------NPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKID--GFQGT-GKVL-----GQGKVSVTNEKGE 153 (491)
T ss_dssp --GTEECC--------CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESE-EEEC-----SSSEEEEECTTSC
T ss_pred --cCcccC--------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEE-EEEe-----cCCEEEEEeCCCc
Confidence 111000 00011222222 233344455654 44333 2222 2234444443444
Q ss_pred eEEEEEcEEEEccCCCCCCccCCCCCCCC-CCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDS-WPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~-~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r 228 (446)
..++.||+||+||| +.| |.+||++. +.+..+++..........+++|+|||+|.+|+|+|..|++.|.+|+++.+
T Consensus 154 ~~~~~~d~lViATG--s~p--~~ipg~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~ 229 (491)
T 3urh_A 154 EQVLEAKNVVIATG--SDV--AGIPGVEVAFDEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEF 229 (491)
T ss_dssp EEEEECSEEEECCC--EEC--CCBTTBCCCCCSSSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECS
T ss_pred eEEEEeCEEEEccC--CCC--CCCCCcccccCCeeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEec
Confidence 56899999999999 555 45777753 34444555444333445689999999999999999999999999999998
Q ss_pred cCC-----cc----cc-ccCCCC-CCeeeccceeEEccCCc---EEecC---C--cEEeecEEEEecCccCCCCCC----
Q 013303 229 SVA-----DE----TH-EKQPGY-DNMWLHSMVERANEDGT---VVFRN---G--RVVSADVIMHCTGYKYNYPFL---- 285 (446)
Q Consensus 229 ~~~-----~~----~~-~~~~~~-~~v~~~~~v~~i~~~~~---v~~~d---G--~~~~~D~vi~atG~~~~~~~l---- 285 (446)
.+. +. .+ +.+.+. .++.....|.++..++. +.+.+ | +++++|.||+|||++|+.++|
T Consensus 230 ~~~~l~~~d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~ 309 (491)
T 3urh_A 230 LDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAK 309 (491)
T ss_dssp SSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHH
T ss_pred cccccccCCHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchh
Confidence 764 10 11 111112 24556667888865432 55653 5 578999999999999999875
Q ss_pred -----CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCC-ccCchhHHHHHHHHHHHHHcCCC
Q 013303 286 -----ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQ-KVIPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 286 -----~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~-~~~~~~~~~~qa~~~a~~l~g~~ 344 (446)
++.|.|.+|+..+ ++.|+||++|++. .....+.+..||+.+|+++.|..
T Consensus 310 ~g~~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 364 (491)
T 3urh_A 310 AGVVLDSRGRVEIDRHFQ----------TSIAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAGQA 364 (491)
T ss_dssp HTCCBCTTSCBCCCTTCB----------CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTSC
T ss_pred cCceECCCCCEeECCCCC----------CCCCCEEEEEecCCCccchhHHHHHHHHHHHHHcCCC
Confidence 3456677776655 5589999999987 34456788999999999999863
No 29
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=100.00 E-value=2.9e-32 Score=259.48 Aligned_cols=274 Identities=15% Similarity=0.196 Sum_probs=193.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.+||+|||||||||+||..|++.|++|+|||+. .+||.+... | +
T Consensus 6 ~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~-~~gg~~~~~---------------------~--------------~ 49 (304)
T 4fk1_A 6 YIDCAVIGAGPAGLNASLVLGRARKQIALFDNN-TNRNRVTQN---------------------S--------------H 49 (304)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECS-CCGGGGSSC---------------------B--------------C
T ss_pred CcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCCeeeee---------------------c--------------C
Confidence 369999999999999999999999999999986 466654321 0 0
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.|+. ..-.+..++.+...+.+.+++.. ..++..+..+....++.++|.+.++. ++.||+||||
T Consensus 50 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~g~----~~~a~~liiA 112 (304)
T 4fk1_A 50 GFIT-----------RDGIKPEEFKEIGLNEVMKYPSV--HYYEKTVVMITKQSTGLFEIVTKDHT----KYLAERVLLA 112 (304)
T ss_dssp CSTT-----------CTTBCHHHHHHHHHHHHTTSTTE--EEEECCEEEEEECTTSCEEEEETTCC----EEEEEEEEEC
T ss_pred CccC-----------CCCCCHHHHHHHHHHHHHhcCCE--EEEeeEEEEeeecCCCcEEEEECCCC----EEEeCEEEEc
Confidence 1111 11123466777666666666543 44556677777665567888776654 7999999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCc-HHHHHHHHhccCCEEEEEEecCC--ccccccC
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYAS-GLDIKRDLAGFAKEVHIASRSVA--DETHEKQ 238 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~s-g~eia~~l~~~~~~V~l~~r~~~--~~~~~~~ 238 (446)
|| +.|+.|++||.+.+.+..++.....+...+++++++|||+|.. +.|+|..+.+.+++|+++.+... ....+.+
T Consensus 113 TG--s~p~~p~i~G~~~~~~~~v~~~~~~~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~~~~~~~l 190 (304)
T 4fk1_A 113 TG--MQEEFPSIPNVREYYGKSLFSCPYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELSQTIMDEL 190 (304)
T ss_dssp CC--CEEECCSCTTHHHHBTTTEESCHHHHSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCCCHHHHHHH
T ss_pred cC--CccccccccCccccccceeeeccccchhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccchhhhhhhh
Confidence 99 8999999999887766666665555555577889999998865 57888888889999999988765 1122223
Q ss_pred CCCCCeeeccceeEEccCC----cEEecCCcEEeecEEEEecCccCCCCCC-------CCCCeeeeCCCCcccccccccC
Q 013303 239 PGYDNMWLHSMVERANEDG----TVVFRNGRVVSADVIMHCTGYKYNYPFL-------ETNGIVTVDDNRVGPLYKHVFP 307 (446)
Q Consensus 239 ~~~~~v~~~~~v~~i~~~~----~v~~~dG~~~~~D~vi~atG~~~~~~~l-------~~~g~i~~~~~~~~~l~~~~~~ 307 (446)
.+.+.......++.+..++ .|.+.||+++++|.+|+++|..++.+++ ++.|.|.+|++++
T Consensus 191 ~~~g~~~~~~~v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~~--------- 261 (304)
T 4fk1_A 191 SNKNIPVITESIRTLQGEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGR--------- 261 (304)
T ss_dssp HTTTCCEECSCEEEEESGGGCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTCB---------
T ss_pred hccceeEeeeeEEEeecCCCeeeeeeccccceeeecceeeeeccccCChhhhhcCeEECCCCCEEECcCCc---------
Confidence 2333222334566665433 2889999999999988888888776653 4556677777665
Q ss_pred CCCCCCeEEecCCCccC--chhHHHHHHHHHHHHH
Q 013303 308 PVLAPGLSFVGIPQKVI--PFPFFELQSKWIASVL 340 (446)
Q Consensus 308 ~~~~p~l~~iG~~~~~~--~~~~~~~qa~~~a~~l 340 (446)
|+.|+||++|++.... ....+..|++.+|..+
T Consensus 262 -Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~AA~~i 295 (304)
T 4fk1_A 262 -TSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAI 295 (304)
T ss_dssp -CSSTTEEECSHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred -cCCCCEEEEeccCCCcchHHHHHHHHHHHHHHHH
Confidence 6799999999876332 2456677888777655
No 30
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.98 E-value=3.3e-33 Score=283.73 Aligned_cols=292 Identities=17% Similarity=0.191 Sum_probs=190.6
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~ 80 (446)
|++||+|||||+||+++|..|++.|++|+|||++ .+||+|.+. ||.|++.++.+..+.....+..
T Consensus 1 m~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~c~~~--------gc~P~k~l~~~a~~~~~~~~~~------ 65 (500)
T 1onf_A 1 MVYDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCVNV--------GCVPKKIMFNAASVHDILENSR------ 65 (500)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHHHT--------SHHHHHHHHHHHHHHHHHHHGG------
T ss_pred CccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CcCcccccc--------CCcchHHHHHHHHHHHHHHhhH------
Confidence 6789999999999999999999999999999997 599999874 5555433222111111111100
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHH-----------HHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC---
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEE-----------VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK--- 146 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~-----------v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~--- 146 (446)
.+.+.. ..-....+ +..++....++.+++ +..++ +..++. ++|++.+.
T Consensus 66 -~~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~-~~~id~-----~~v~v~~~~~~ 127 (500)
T 1onf_A 66 -HYGFDT---------KFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVD--LYEGT-ASFLSE-----NRILIKGTKDN 127 (500)
T ss_dssp -GGTCCC---------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESC-CCCC------------------
T ss_pred -hcCCcc---------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeE-EEEeeC-----CEEEEEecccc
Confidence 011100 00011222 223344445566776 55554 223321 33333220
Q ss_pred ------CCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccC
Q 013303 147 ------DDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFA 220 (446)
Q Consensus 147 ------~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~ 220 (446)
.+...++.||+||+||| +.|..|++||.+ .++++.++..... +++|+|||+|.+|+|+|..|++.|
T Consensus 128 ~~~~~~~~~~~~~~~d~lViAtG--s~p~~p~i~G~~----~~~~~~~~~~~~~--~~~vvViGgG~ig~E~A~~l~~~g 199 (500)
T 1onf_A 128 NNKDNGPLNEEILEGRNILIAVG--NKPVFPPVKGIE----NTISSDEFFNIKE--SKKIGIVGSGYIAVELINVIKRLG 199 (500)
T ss_dssp -------------CBSSEEECCC--CCBCCCSCTTGG----GCEEHHHHTTCCC--CSEEEEECCSHHHHHHHHHHHTTT
T ss_pred ccccccCCCceEEEeCEEEECCC--CCCCCCCCCCCC----cccCHHHHhccCC--CCeEEEECChHHHHHHHHHHHHcC
Confidence 01123689999999999 889999999974 2567766655544 899999999999999999999999
Q ss_pred CEEEEEEecCC-----ccc----c-ccCCCC-CCeeeccceeEEccC--C--cEEecCCcE-EeecEEEEecCccCCCCC
Q 013303 221 KEVHIASRSVA-----DET----H-EKQPGY-DNMWLHSMVERANED--G--TVVFRNGRV-VSADVIMHCTGYKYNYPF 284 (446)
Q Consensus 221 ~~V~l~~r~~~-----~~~----~-~~~~~~-~~v~~~~~v~~i~~~--~--~v~~~dG~~-~~~D~vi~atG~~~~~~~ 284 (446)
.+|+++.+.+. +.. + +.+.+. -++..+..|.++..+ + .|.++||++ +++|.||+|+|++|+.++
T Consensus 200 ~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~~ 279 (500)
T 1onf_A 200 IDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTEN 279 (500)
T ss_dssp CEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTTT
T ss_pred CeEEEEecCCccCcccchhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCCC
Confidence 99999999764 111 1 111122 256667789998753 2 377889988 999999999999999875
Q ss_pred C--CC------CCeeeeCCCCcccccccccCCCCCCCeEEecCCCc----------------------------------
Q 013303 285 L--ET------NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK---------------------------------- 322 (446)
Q Consensus 285 l--~~------~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~---------------------------------- 322 (446)
| +. .|.|.+|+.++ ++.|+||++|++..
T Consensus 280 l~~~~~g~~~~~G~i~vd~~~~----------t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 349 (500)
T 1onf_A 280 LKLEKLNVETNNNYIVVDENQR----------TSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFY 349 (500)
T ss_dssp SSCTTTTCCBSSSCEEECTTCB----------CSSSSEEECSTTEEEC------------------------------CB
T ss_pred CCchhcCccccCCEEEECCCcc----------cCCCCEEEEeccccccccccccccccccccccccccccccccccccCC
Confidence 4 33 34466666554 55899999998761
Q ss_pred -cCchhHHHHHHHHHHHHHcCC
Q 013303 323 -VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 323 -~~~~~~~~~qa~~~a~~l~g~ 343 (446)
....+.+..||+.+|+++.|.
T Consensus 350 ~~~~~~~A~~~g~~aa~~i~g~ 371 (500)
T 1onf_A 350 NVQLTPVAINAGRLLADRLFLK 371 (500)
T ss_dssp CCCCHHHHHHHHHHHHHHHHSC
T ss_pred cccchhHHHHHHHHHHHHHhCC
Confidence 123567889999999999874
No 31
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=99.98 E-value=6.4e-33 Score=281.02 Aligned_cols=292 Identities=20% Similarity=0.262 Sum_probs=200.5
Q ss_pred CeEEEECcChHHHHHHHHHHH-CCCcEEEEe--------eCCCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-Cceeec
Q 013303 3 RHVAVIGAGAAGLVVGHELLR-EGHTVVVYE--------KGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVN 72 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~-~g~~v~v~e--------~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~~ 72 (446)
+||+|||||++|+++|..|++ .|++|+||| +...+||+|.+. ||.|++.+..+..+ ..+.
T Consensus 8 ~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~--------gciP~k~l~~~a~~~~~~~-- 77 (495)
T 2wpf_A 8 FDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNV--------GCVPKKLMVTGAQYMDHLR-- 77 (495)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHH--------SHHHHHHHHHHHHHHHHHH--
T ss_pred cCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecC--------CcchHHHHHHHHHHHHHHh--
Confidence 699999999999999999999 999999999 356899999875 56665443322211 1110
Q ss_pred CCCCCcccCCCCCCcCCCCCCCCCCC--CCCHHHHHHHHHHHH-----------HHh-CCCCcEEeCeEEEEEEEcCCCc
Q 013303 73 LPRELMGFQAYPFVARNYEGSVDLRR--YPGHEEVLRYLQNFA-----------REF-GVDQVVRLHTEVLNARLVESNK 138 (446)
Q Consensus 73 ~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~v~~yl~~~~-----------~~~-~l~~~i~~~~~V~~v~~~~~~~ 138 (446)
.+..|.+... .. .....++.++..++. ++. +++ +..+ ++..++ .
T Consensus 78 ------~~~~~g~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~--~~~g-~~~~i~-----~ 135 (495)
T 2wpf_A 78 ------ESAGFGWEFD--------GSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLD--FFLG-WGSLES-----K 135 (495)
T ss_dssp ------HHHTTTEECC--------GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEE--EEES-EEEEEE-----T
T ss_pred ------HHHhcCcccC--------CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeE--EEEe-EEEEee-----C
Confidence 0111211100 00 123345555544433 333 554 5544 355543 2
Q ss_pred eEEEEEeCCC----ceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHH
Q 013303 139 WKVKSRKKDD----VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKR 214 (446)
Q Consensus 139 ~~v~~~~~~~----~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~ 214 (446)
++|++.+..+ ...++.||+|||||| +.|+.|++||.+. ++++.++..... .+++|+|||+|.+|+|+|.
T Consensus 136 ~~v~v~~~~~~~~~~~~~~~~d~lViATG--s~p~~p~i~G~~~----~~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~ 208 (495)
T 2wpf_A 136 NVVVVRETADPKSAVKERLQADHILLATG--SWPQMPAIPGIEH----CISSNEAFYLPE-PPRRVLTVGGGFISVEFAG 208 (495)
T ss_dssp TEEEEESSSSTTSCEEEEEEEEEEEECCC--EEECCCCCTTGGG----CEEHHHHTTCSS-CCSEEEEECSSHHHHHHHH
T ss_pred CEEEEeecCCccCCCCeEEEcCEEEEeCC--CCcCCCCCCCccc----cccHHHHHhhhh-cCCeEEEECCCHHHHHHHH
Confidence 6677762111 024799999999999 8999999999742 456666554433 4789999999999999999
Q ss_pred HHhcc---CCEEEEEEecCC-----cc----cc-ccCCCC-CCeeeccceeEEccCC----cEEecCCcEEeecEEEEec
Q 013303 215 DLAGF---AKEVHIASRSVA-----DE----TH-EKQPGY-DNMWLHSMVERANEDG----TVVFRNGRVVSADVIMHCT 276 (446)
Q Consensus 215 ~l~~~---~~~V~l~~r~~~-----~~----~~-~~~~~~-~~v~~~~~v~~i~~~~----~v~~~dG~~~~~D~vi~at 276 (446)
.|++. +.+|+++.+.+. +. .+ +.+.+. .++.....|.++..++ .|.+.||+++++|.||+|+
T Consensus 209 ~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~ 288 (495)
T 2wpf_A 209 IFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAI 288 (495)
T ss_dssp HHHHHCCTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred HHHhhCCCCCeEEEEEcCCccccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECC
Confidence 99999 999999999764 11 01 111122 2566777899987542 3778899999999999999
Q ss_pred CccCCCCCC--C-------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303 277 GYKYNYPFL--E-------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 277 G~~~~~~~l--~-------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~ 343 (446)
|++|+.++| + +.|.|.+|+.++ ++.|+||++|++.. ....+.+..||+.+|.++.|.
T Consensus 289 G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~~~----------t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 355 (495)
T 2wpf_A 289 GRIPRTNDLQLGNVGVKLTPKGGVQVDEFSR----------TNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGN 355 (495)
T ss_dssp CEEECCGGGTGGGTTCCBCTTSSBCCCTTCB----------CSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSS
T ss_pred CCcccccccchhhcCccCCCCCCEEECCCCc----------cCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCC
Confidence 999998854 2 234455555544 45899999999875 345678899999999999874
No 32
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=99.97 E-value=2.2e-32 Score=279.17 Aligned_cols=293 Identities=15% Similarity=0.163 Sum_probs=208.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~ 80 (446)
++||+|||||++|+++|..|++.|++|+|||+++.+||+|.+. ||.|++.++... .+..+. +.
T Consensus 43 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~--------g~~p~k~l~~~~~~~~~~~-~~------- 106 (523)
T 1mo9_A 43 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHN--------ACVPHHLFSDCAAELMLAR-TF------- 106 (523)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHH--------SHHHHHHHHHHHHHHHHHH-HT-------
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCccccc--------CcCchHHHHHHHHHHHHHh-hh-------
Confidence 4799999999999999999999999999999998899999864 444433221111 011110 00
Q ss_pred CCCC-CCcCCCCCCCCCCCCCCHHHHHHHHHH-------HH-----HHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC
Q 013303 81 QAYP-FVARNYEGSVDLRRYPGHEEVLRYLQN-------FA-----REFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD 147 (446)
Q Consensus 81 ~d~~-~~~~~~~~~~~~~~~~~~~~v~~yl~~-------~~-----~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~ 147 (446)
..|. ++.. ...+++..++.+++.. +. ++.+++ +.++.+|..++. ++|.+. +
T Consensus 107 ~~~g~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~-----~~v~~~-g- 170 (523)
T 1mo9_A 107 SGQYWFPDM-------TEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLE--YILNCPAKVIDN-----HTVEAA-G- 170 (523)
T ss_dssp TTSTTCCCC-------TTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCC--EEESSCCEEEET-----TEEEET-T-
T ss_pred hhcCcHHHH-------HhhhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcE--EEEeeEEEEeeC-----CEEEEC-C-
Confidence 0111 1111 2334557777777753 33 556776 665778877752 455553 2
Q ss_pred CceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecC-CCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEE
Q 013303 148 DVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR-IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIA 226 (446)
Q Consensus 148 ~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~-~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~ 226 (446)
.++.||+||+||| +.|..|++||.+. . .++++.++. ......+++|+|||+|.+|+|+|..+++.|.+|+++
T Consensus 171 ---~~~~~d~lViATG--s~p~~p~i~G~~~-~-~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv 243 (523)
T 1mo9_A 171 ---KVFKAKNLILAVG--AGPGTLDVPGVNA-K-GVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVML 243 (523)
T ss_dssp ---EEEEBSCEEECCC--EECCCCCSTTTTS-B-TEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred ---EEEEeCEEEECCC--CCCCCCCCCCccc-C-cEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 3689999999999 8999999999864 2 256666555 444445699999999999999999999999999999
Q ss_pred EecCC-----cc----cc-ccCCCC-CCeeeccceeEEcc--CC-----cEEecCCc-EEeecEEEEecCccCCCC-CCC
Q 013303 227 SRSVA-----DE----TH-EKQPGY-DNMWLHSMVERANE--DG-----TVVFRNGR-VVSADVIMHCTGYKYNYP-FLE 286 (446)
Q Consensus 227 ~r~~~-----~~----~~-~~~~~~-~~v~~~~~v~~i~~--~~-----~v~~~dG~-~~~~D~vi~atG~~~~~~-~l~ 286 (446)
.+.+. +. .+ +.+.+. .++..+..|.++.. ++ .|.+.||+ ++++|.||+|||++|+.+ ++.
T Consensus 244 ~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~ 323 (523)
T 1mo9_A 244 VRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAK 323 (523)
T ss_dssp CSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHH
T ss_pred EecCcccccccHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHH
Confidence 98764 10 01 111122 25666778888875 33 26677887 899999999999999987 542
Q ss_pred -------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303 287 -------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 287 -------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~ 343 (446)
+.|.|.+|++++ ++.|+||++|++... ...+.+..||+.+|.++.|.
T Consensus 324 ~~gl~~~~~G~i~Vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 378 (523)
T 1mo9_A 324 ILGLDLGPKGEVLVNEYLQ----------TSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGE 378 (523)
T ss_dssp HHTCCBCTTSCBCCCTTSB----------CSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHTTC
T ss_pred HcCCccCCCCCEEECCCCc----------cCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 456677777655 558999999998753 45678899999999999985
No 33
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=99.97 E-value=1.3e-32 Score=276.62 Aligned_cols=287 Identities=20% Similarity=0.264 Sum_probs=195.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-CceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~~~~~~~~~~ 80 (446)
.+||+|||||++|+++|..|++.|++|+|||++ .+||+|.+. ||.|++.+..+..+ ..++ +.+
T Consensus 4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~--------gciP~k~l~~~a~~~~~~~-~~~------ 67 (463)
T 2r9z_A 4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCVNV--------GCVPKKVMWYASHLAEAVR-DAP------ 67 (463)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHH--------SHHHHHHHHHHHHHHHHHH-HGG------
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCcCc--------CchhHHHHHHHHHHHHHHh-hhh------
Confidence 479999999999999999999999999999997 799999864 55555433222211 1111 111
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHH-----------HHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQ-----------NFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~-----------~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~ 149 (446)
.|.+... .......++.++.. ...++.+++ +..+ ++..++ .++|++ ++
T Consensus 68 -~~g~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~i~-----~~~v~~-~g--- 126 (463)
T 2r9z_A 68 -GFGVQAS--------GGTLDWPRLVAGRDRYIGAINSFWDGYVERLGIT--RVDG-HARFVD-----AHTIEV-EG--- 126 (463)
T ss_dssp -GGTBCCC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEES-CEEEEE-----TTEEEE-TT---
T ss_pred -hcCcccC--------CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEe-EEEEcc-----CCEEEE-CC---
Confidence 1111100 01122334443333 333455665 5555 344443 256666 32
Q ss_pred eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
.++.||+||+||| +.|..|++||.+. ++++.++..... .+++|+|||+|.+|+|+|..|++.|.+|+++.+.
T Consensus 127 -~~~~~d~lviAtG--s~p~~p~i~G~~~----~~~~~~~~~~~~-~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~ 198 (463)
T 2r9z_A 127 -QRLSADHIVIATG--GRPIVPRLPGAEL----GITSDGFFALQQ-QPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALE 198 (463)
T ss_dssp -EEEEEEEEEECCC--EEECCCSCTTGGG----SBCHHHHHHCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred -EEEEcCEEEECCC--CCCCCCCCCCccc----eecHHHHhhhhc-cCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcC
Confidence 3689999999999 8899999998742 344444332222 4689999999999999999999999999999987
Q ss_pred CC-----ccc----c-ccCCCC-CCeeeccceeEEccCC---cEEecCCc-EEeecEEEEecCccCCCCCC---------
Q 013303 230 VA-----DET----H-EKQPGY-DNMWLHSMVERANEDG---TVVFRNGR-VVSADVIMHCTGYKYNYPFL--------- 285 (446)
Q Consensus 230 ~~-----~~~----~-~~~~~~-~~v~~~~~v~~i~~~~---~v~~~dG~-~~~~D~vi~atG~~~~~~~l--------- 285 (446)
+. +.. + +.+.+. .++..+..|.++..++ .|.+.||+ ++++|.||+|||++|+.++|
T Consensus 199 ~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~ 278 (463)
T 2r9z_A 199 DRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEV 278 (463)
T ss_dssp SSSSTTSCHHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCC
T ss_pred CccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCcc
Confidence 64 110 1 111112 2556677888887532 37788999 89999999999999998754
Q ss_pred CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303 286 ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 286 ~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~ 343 (446)
++.|.|.+|+.++ ++.|+||++|++.. ....+.+..||+.+|.++.|.
T Consensus 279 ~~~G~i~vd~~~~----------t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 327 (463)
T 2r9z_A 279 QSNGMVPTDAYQN----------TNVPGVYALGDITGRDQLTPVAIAAGRRLAERLFDG 327 (463)
T ss_dssp CTTSCCCCCTTSB----------CSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEeECCCCc----------cCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 2345566666654 55899999999864 345678899999999999875
No 34
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=99.97 E-value=7.1e-33 Score=279.07 Aligned_cols=286 Identities=17% Similarity=0.166 Sum_probs=194.7
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCc-cCceeecCCCCCcccC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMGFQ 81 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~-y~~l~~~~~~~~~~~~ 81 (446)
+||+|||||++|+++|..|++.|++|+|||+.+.+||+|.+. ||.|++.++.... +..+. +.+.
T Consensus 5 ~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~--------gciPsk~l~~~a~~~~~~~-~~~~------ 69 (466)
T 3l8k_A 5 YDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYS--------GCVPSKTVREVIQTAWRLT-NIAN------ 69 (466)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHH-HHHC------
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCccccc--------CCCchHHHHHHHHHHHHHH-hccc------
Confidence 699999999999999999999999999999999999999875 5665543332211 11110 0000
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHH------------HHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLR------------YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~------------yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~ 149 (446)
+ ........+.+ ++....++.++. +.. .+|..++. +.+.|...++ +
T Consensus 70 -~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~-g~v~~id~---~~~~V~~~~g--~ 127 (466)
T 3l8k_A 70 -V-------------KIPLDFSTVQDRKDYVQELRFKQHKRNMSQYETLT--FYK-GYVKIKDP---THVIVKTDEG--K 127 (466)
T ss_dssp -S-------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHTTCTTEE--EES-EEEEEEET---TEEEEEETTS--C
T ss_pred -C-------------CCCcCHHHHHHHHHhheeccccchHHHHHHhCCCE--EEE-eEEEEecC---CeEEEEcCCC--c
Confidence 0 01112223332 222233333443 333 36666653 4566665433 2
Q ss_pred eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecC---CCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEE
Q 013303 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR---IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIA 226 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~---~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~ 226 (446)
..++.||+||+||| +.|+.|++||.+. +.++.++. ......+++|+|||+|.+|+|+|..|++.+.+|+++
T Consensus 128 ~~~~~~d~lviAtG--~~p~~p~i~G~~~----~~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv 201 (466)
T 3l8k_A 128 EIEAETRYMIIASG--AETAKLRLPGVEY----CLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHII 201 (466)
T ss_dssp EEEEEEEEEEECCC--EEECCCCCTTGGG----SBCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEecCEEEECCC--CCccCCCCCCccc----eEeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence 33499999999999 8999999999862 33444332 112235799999999999999999999999999999
Q ss_pred EecCC------ccc----cccCCCCCCeeeccceeEEccCC--c--EEec--CCc--EEeecEEEEecCccCCCCC-CC-
Q 013303 227 SRSVA------DET----HEKQPGYDNMWLHSMVERANEDG--T--VVFR--NGR--VVSADVIMHCTGYKYNYPF-LE- 286 (446)
Q Consensus 227 ~r~~~------~~~----~~~~~~~~~v~~~~~v~~i~~~~--~--v~~~--dG~--~~~~D~vi~atG~~~~~~~-l~- 286 (446)
.+.+. +.. +.+..+ .++..+..|.++..++ . +.+. ||+ ++++|.||+|+|++|+.++ +.
T Consensus 202 ~~~~~~l~~~~d~~~~~~l~~~l~-v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~ 280 (466)
T 3l8k_A 202 EMLDRALITLEDQDIVNTLLSILK-LNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGARE 280 (466)
T ss_dssp CSSSSSCTTSCCHHHHHHHHHHHC-CCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCCTTTGG
T ss_pred EeCCcCCCCCCCHHHHHHHHhcCE-EEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccccchhh
Confidence 98764 101 111111 4566677888887532 2 6666 676 7899999999999999883 32
Q ss_pred ------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303 287 ------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 287 ------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~ 343 (446)
+.| |.+|+..+ ++.|+||++|++.. ....+.+..||+.+|.++.|.
T Consensus 281 ~gl~~~~~G-i~vd~~~~----------t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 333 (466)
T 3l8k_A 281 IGLSISKTG-IVVDETMK----------TNIPNVFATGDANGLAPYYHAAVRMSIAAANNIMAN 333 (466)
T ss_dssp GTCCBCSSS-BCCCTTCB----------CSSTTEEECGGGTCSCCSHHHHHHHHHHHHHHHHTT
T ss_pred cCceeCCCC-EeECCCcc----------CCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHhCC
Confidence 344 55555544 45899999999875 345678899999999999875
No 35
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=99.97 E-value=3e-32 Score=274.83 Aligned_cols=298 Identities=17% Similarity=0.191 Sum_probs=201.2
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCcc
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMG 79 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~ 79 (446)
|++||+|||||++|+++|..|++.|++|+|||+++.+||+|.+. ||.|++.++.+. .+..+..+.+. ++
T Consensus 1 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~--------g~~psk~l~~~~~~~~~~~~~~~~--~g 70 (468)
T 2qae_A 1 NPYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNV--------GCIPSKALLHATHLYHDAHANFAR--YG 70 (468)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHHHTHHH--HT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCc--------CcHhHHHHHHHHHHHHHHHHHHHh--cC
Confidence 56899999999999999999999999999999998999999864 555544332211 11111000000 00
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHH-----------HHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEE-----------VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~-----------v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~ 148 (446)
+ +... ........ +...+.++.++.+++ ++.++.+ .++ . +.++|...+ +
T Consensus 71 ~---~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~--~~~g~~~-~i~--~-~~~~v~~~~--G 130 (468)
T 2qae_A 71 L---MGGE---------GVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVT--YYKGEGS-FET--A-HSIRVNGLD--G 130 (468)
T ss_dssp E---ECGG---------GCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCE--EEEEEEE-EEE--T-TEEEEEETT--S
T ss_pred c---ccCC---------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEE-Eee--C-CEEEEEecC--C
Confidence 0 0000 00011122 233345666677877 6666544 343 2 445555432 3
Q ss_pred ceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (446)
Q Consensus 149 ~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r 228 (446)
...++.||+||+||| +.|..|+++|.+. . .++++.++..... .+++|+|||+|.+|+|+|..|++.|.+|+++.+
T Consensus 131 ~~~~~~~d~lviAtG--~~p~~p~~~g~~~-~-~v~t~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~ 205 (468)
T 2qae_A 131 KQEMLETKKTIIATG--SEPTELPFLPFDE-K-VVLSSTGALALPR-VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEF 205 (468)
T ss_dssp CEEEEEEEEEEECCC--EEECCBTTBCCCS-S-SEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred ceEEEEcCEEEECCC--CCcCCCCCCCCCc-C-ceechHHHhhccc-CCceEEEECCCHHHHHHHHHHHHhCCEEEEEec
Confidence 235799999999999 7899999988754 1 3556555544332 579999999999999999999999999999998
Q ss_pred cCC-----c----ccc-ccC-CCCC-CeeeccceeEEccCC-c--EEec--CC--cEEeecEEEEecCccCCCCCCC---
Q 013303 229 SVA-----D----ETH-EKQ-PGYD-NMWLHSMVERANEDG-T--VVFR--NG--RVVSADVIMHCTGYKYNYPFLE--- 286 (446)
Q Consensus 229 ~~~-----~----~~~-~~~-~~~~-~v~~~~~v~~i~~~~-~--v~~~--dG--~~~~~D~vi~atG~~~~~~~l~--- 286 (446)
.+. + ..+ +.+ .+.+ ++.....|.++..++ . +.+. || +++++|.||+|+|++|+.++|.
T Consensus 206 ~~~~l~~~d~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~ 285 (468)
T 2qae_A 206 APRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDK 285 (468)
T ss_dssp SSSSSTTSCHHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECCTTSCHHH
T ss_pred CCcccccCCHHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchh
Confidence 864 1 111 112 2222 566667888887543 2 5555 77 5789999999999999998742
Q ss_pred ------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc--cCchhHHHHHHHHHHHHHcCC
Q 013303 287 ------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK--VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 287 ------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~--~~~~~~~~~qa~~~a~~l~g~ 343 (446)
+.|.|.+|++++ ++.|+||++|++.. ....+.+..||+.+|.++.|.
T Consensus 286 ~gl~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 340 (468)
T 2qae_A 286 INVAKNERGFVKIGDHFE----------TSIPDVYAIGDVVDKGPMLAHKAEDEGVACAEILAGK 340 (468)
T ss_dssp HTCCBCTTSCBCCCTTSB----------CSSTTEEECGGGBSSSCSCHHHHHHHHHHHHHHHTTC
T ss_pred cCCccCCCCCEeECCCcc----------cCCCCEEEeeccCCCCCccHhHHHHHHHHHHHHHcCC
Confidence 345677776655 55899999999876 345677899999999999985
No 36
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=99.97 E-value=8.2e-32 Score=271.92 Aligned_cols=284 Identities=17% Similarity=0.170 Sum_probs=183.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~ 79 (446)
++||+|||||++||++|..|++. |++|+|||+++.++ |... +. +.+ ....
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~--~~~~--------gl---------~~~------~~g~--- 54 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS--YGGC--------GI---------PYY------VSGE--- 54 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc--cccc--------cc---------chh------hcCC---
Confidence 57999999999999999999998 89999999987654 1110 00 000 0000
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEE
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAV 158 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~V 158 (446)
++.. ...++...++..++..+.+++++. ++++++|+.+++.. ..+.+.+. .+...++.||+|
T Consensus 55 ---~~~~---------~~~~~~~~~~~~~~~~~~~~~gi~--~~~~~~V~~id~~~---~~v~~~~~~~g~~~~~~~d~l 117 (472)
T 3iwa_A 55 ---VSNI---------ESLQATPYNVVRDPEFFRINKDVE--ALVETRAHAIDRAA---HTVEIENLRTGERRTLKYDKL 117 (472)
T ss_dssp --------------------------------------CE--EECSEEEEEEETTT---TEEEEEETTTCCEEEEECSEE
T ss_pred ---CCch---------HHhccccchhccCHHHHhhhcCcE--EEECCEEEEEECCC---CEEEEeecCCCCEEEEECCEE
Confidence 0000 011111223566777777778887 88999999998755 34455441 233457899999
Q ss_pred EEccCCCCCCccCCCCCCCCCCccEEEeeecCCC-------CCCCCCEEEEEecCCcHHHHHHHHhcc-CCEEEEEEecC
Q 013303 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGF-AKEVHIASRSV 230 (446)
Q Consensus 159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~-------~~~~~k~VvVVG~G~sg~eia~~l~~~-~~~V~l~~r~~ 230 (446)
|+||| +.|..|++||.+. . .+.+.....+. ....+++|+|||+|.+|+|+|..+++. +.+|+++.+.+
T Consensus 118 viAtG--~~p~~p~i~G~~~-~-~v~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~ 193 (472)
T 3iwa_A 118 VLALG--SKANRPPVEGMDL-A-GVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELAD 193 (472)
T ss_dssp EECCC--EEECCCSCTTTTS-B-TEEECCSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSS
T ss_pred EEeCC--CCcCCCCCCCCCC-C-CEEEeCCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccC
Confidence 99999 8999999999862 2 23333322111 113479999999999999999999999 99999999876
Q ss_pred Cc----------cccc-cCCCC-CCeeeccceeEEcc-CCc--EEecCCcEEeecEEEEecCccCCCCCC-------CCC
Q 013303 231 AD----------ETHE-KQPGY-DNMWLHSMVERANE-DGT--VVFRNGRVVSADVIMHCTGYKYNYPFL-------ETN 288 (446)
Q Consensus 231 ~~----------~~~~-~~~~~-~~v~~~~~v~~i~~-~~~--v~~~dG~~~~~D~vi~atG~~~~~~~l-------~~~ 288 (446)
.. ..+. .+.+. .++.....|.++.. ++. +.+.||+++++|.||+|||+.|+.+++ ++.
T Consensus 194 ~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~ 273 (472)
T 3iwa_A 194 QIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPR 273 (472)
T ss_dssp SSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEEECCHHHHHHTCCBCTT
T ss_pred cccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCC
Confidence 41 0011 11112 25566678999876 343 678899999999999999999998764 345
Q ss_pred CeeeeCCCCcccccccccCCCCCCCeEEecCCCc-----------cCchhHHHHHHHHHHHHHcCCC
Q 013303 289 GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-----------VIPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 289 g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-----------~~~~~~~~~qa~~~a~~l~g~~ 344 (446)
|.|.+|+..+ ++.|+||++|++.. ....+.+..||+.+|+++.|..
T Consensus 274 g~i~vd~~~~----------t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 330 (472)
T 3iwa_A 274 GAIIVDTRMR----------TSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADGD 330 (472)
T ss_dssp CCEECCTTCB----------CSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHTTCC
T ss_pred CCEEECCCcc----------cCCCCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhcCCC
Confidence 6677777655 55899999998752 1245678999999999999863
No 37
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=99.97 E-value=5.9e-32 Score=267.92 Aligned_cols=273 Identities=19% Similarity=0.181 Sum_probs=190.8
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCc--EEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHT--VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~--v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~ 78 (446)
|+++|+|||||+||+++|..|++.|++ |+|||+++..+.... .+...+.. ...
T Consensus 1 M~~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~---------------------~l~~~~~~----g~~ 55 (410)
T 3ef6_A 1 MATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRP---------------------SLSKAVLD----GSL 55 (410)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSG---------------------GGGTHHHH----TSS
T ss_pred CCCCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCc---------------------cccHHHhC----CCC
Confidence 678999999999999999999999987 999999875432100 00000000 000
Q ss_pred ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (446)
Q Consensus 79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V 158 (446)
...++ + +..++.++.+++ ++++++|+.+++.. ++|++.++. ++.||+|
T Consensus 56 ~~~~~---------------~--------~~~~~~~~~~i~--~~~~~~v~~id~~~---~~v~~~~g~----~~~~d~l 103 (410)
T 3ef6_A 56 ERPPI---------------L--------AEADWYGEARID--MLTGPEVTALDVQT---RTISLDDGT----TLSADAI 103 (410)
T ss_dssp SSCCB---------------S--------SCTTHHHHTTCE--EEESCCEEEEETTT---TEEEETTSC----EEECSEE
T ss_pred CHHHh---------------c--------CCHHHHHHCCCE--EEeCCEEEEEECCC---CEEEECCCC----EEECCEE
Confidence 00000 0 011234456777 88999999998643 677776553 7899999
Q ss_pred EEccCCCCCCccCCCCCCCCCCccEEEeeecCCC-----CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc-
Q 013303 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-----NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD- 232 (446)
Q Consensus 159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~-----~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~- 232 (446)
|+||| +.|+.|++||.+. ..+.+.....+. ....+++|+|||+|.+|+|+|..+++.+.+|+++.+.+..
T Consensus 104 vlAtG--~~p~~~~ipG~~~--~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l 179 (410)
T 3ef6_A 104 VIATG--SRARTMALPGSQL--PGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL 179 (410)
T ss_dssp EECCC--EEECCCCCTTTTS--TTEECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred EEccC--CcccCCCCCCccc--cceEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc
Confidence 99999 7899999999763 223332222111 1235799999999999999999999999999999988751
Q ss_pred -----c----cccc-CCCC-CCeeeccceeEEccCC---cEEecCCcEEeecEEEEecCccCCCCCCCCC-----Ceeee
Q 013303 233 -----E----THEK-QPGY-DNMWLHSMVERANEDG---TVVFRNGRVVSADVIMHCTGYKYNYPFLETN-----GIVTV 293 (446)
Q Consensus 233 -----~----~~~~-~~~~-~~v~~~~~v~~i~~~~---~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~-----g~i~~ 293 (446)
. .+.+ +.+. .++..+..|+++..++ .|.++||+++++|.||+|+|+.|+.+++... +.|.+
T Consensus 180 ~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~gi~v 259 (410)
T 3ef6_A 180 VRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPADQLARQAGLACDRGVIV 259 (410)
T ss_dssp HHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBSSSEEC
T ss_pred hhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecHHHHHhCCCccCCeEEE
Confidence 1 1111 1111 2556678899997654 3889999999999999999999998765322 22666
Q ss_pred CCCCcccccccccCCCCCCCeEEecCCCccC----------chhHHHHHHHHHHHHHcCCC
Q 013303 294 DDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI----------PFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~----------~~~~~~~qa~~~a~~l~g~~ 344 (446)
|+..+ ++.|+||++|++.... .++.+..||+.+|+++.|+.
T Consensus 260 d~~~~----------t~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~ 310 (410)
T 3ef6_A 260 DHCGA----------TLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGKN 310 (410)
T ss_dssp CTTSB----------CSSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred ccCee----------ECCCCEEEEEcceeccCCCCCeeeechHHHHHHHHHHHHHHHcCCC
Confidence 66654 5589999999886432 24788999999999999874
No 38
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=99.97 E-value=4.2e-32 Score=274.18 Aligned_cols=297 Identities=15% Similarity=0.127 Sum_probs=200.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~ 80 (446)
++||+|||||++|+++|..|++.|++|+|||+++.+||+|.+. ||.|++.++.+. .+..+.. ..+
T Consensus 6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~--------g~~Psk~l~~~~~~~~~~~~------~~~ 71 (474)
T 1zmd_A 6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNV--------GCIPSKALLNNSHYYHMAHG------TDF 71 (474)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHHS------SHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCccccc--------CccchHHHHHHHHHHHHhhh------hhH
Confidence 4799999999999999999999999999999998999999864 555554333211 1111100 000
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHH-----------HHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLR-----------YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~-----------yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~ 149 (446)
..+.++.. ....+..++.. .+.++.++.+++ ++.++.+ .++ . +.++|.+.++ .
T Consensus 72 ~~~g~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~-~~~--~-~~~~v~~~~g--g 135 (474)
T 1zmd_A 72 ASRGIEMS--------EVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVV--HVNGYGK-ITG--K-NQVTATKADG--G 135 (474)
T ss_dssp HHTTEEES--------CEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESEEE-EEE--T-TEEEEECTTS--C
T ss_pred hhCccccC--------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEE-Eec--C-CEEEEEecCC--C
Confidence 00111000 00011222222 235556667776 7776543 343 2 4566654321 1
Q ss_pred eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
..++.||+||+||| +.|..|+++|.+.. .++++.++..... .+++|+|||+|.+|+|+|..|++.|.+|+++.+.
T Consensus 136 ~~~~~~d~lViAtG--s~p~~p~i~g~~~~--~v~t~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~ 210 (474)
T 1zmd_A 136 TQVIDTKNILIATG--SEVTPFPGITIDED--TIVSSTGALSLKK-VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFL 210 (474)
T ss_dssp EEEEEEEEEEECCC--EEECCCTTCCCCSS--SEECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cEEEEeCEEEECCC--CCCCCCCCCCCCcC--cEEcHHHHhhccc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEecc
Confidence 24799999999999 78999999997642 3667666554433 4699999999999999999999999999999987
Q ss_pred CCc------cc----c-ccCCCC-CCeeeccceeEEccCC-c-EEe-------cCCcEEeecEEEEecCccCCCCCCC--
Q 013303 230 VAD------ET----H-EKQPGY-DNMWLHSMVERANEDG-T-VVF-------RNGRVVSADVIMHCTGYKYNYPFLE-- 286 (446)
Q Consensus 230 ~~~------~~----~-~~~~~~-~~v~~~~~v~~i~~~~-~-v~~-------~dG~~~~~D~vi~atG~~~~~~~l~-- 286 (446)
+.. .. + +.+.+. -++..+..|.++..++ . +.+ .+|+++++|.||+|+|++|+.++|.
T Consensus 211 ~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~ 290 (474)
T 1zmd_A 211 GHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLE 290 (474)
T ss_dssp SSSSCSSCCHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHH
T ss_pred CccCCcccCHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCch
Confidence 641 00 1 111112 2556667888887543 2 332 3567899999999999999998742
Q ss_pred -------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303 287 -------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 287 -------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~ 343 (446)
+.|.|.+|++++ ++.|+||++|++... ...+.+..||+.+|.++.|.
T Consensus 291 ~~g~~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 345 (474)
T 1zmd_A 291 ELGIELDPRGRIPVNTRFQ----------TKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGG 345 (474)
T ss_dssp HHTCCCCTTSCCCCCTTCB----------CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred hcCCccCCCCCEEECcCCc----------cCCCCEEEeeecCCCCccHHHHHHHHHHHHHHhcCC
Confidence 245566666654 558999999998753 34578899999999999986
No 39
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=99.97 E-value=1.7e-31 Score=270.68 Aligned_cols=277 Identities=15% Similarity=0.178 Sum_probs=191.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCC---CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREG---HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g---~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~ 78 (446)
.+||+|||||++|+++|..|++.| .+|+|||+++.++..+... ..| .....
T Consensus 35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~-------------------~~~------~~~~~- 88 (490)
T 2bc0_A 35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNISFLGAGM-------------------ALW------IGEQI- 88 (490)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCSBCGGGH-------------------HHH------HTTSS-
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCCCcccccc-------------------chh------hcCcc-
Confidence 379999999999999999999988 9999999987654321100 000 00000
Q ss_pred ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (446)
Q Consensus 79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V 158 (446)
.+ . +++...+.+.+++++++ ++++++|..++..+ ..+++.. + +...++.||+|
T Consensus 89 --~~--~-----------------~~~~~~~~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~-~--g~~~~~~~d~l 141 (490)
T 2bc0_A 89 --AG--P-----------------EGLFYSDKEELESLGAK--VYMESPVQSIDYDA-KTVTALV-D--GKNHVETYDKL 141 (490)
T ss_dssp --SC--S-----------------GGGBSCCHHHHHHTTCE--EETTCCEEEEETTT-TEEEEEE-T--TEEEEEECSEE
T ss_pred --CC--H-----------------HHhhhcCHHHHHhCCCE--EEeCCEEEEEECCC-CEEEEEe-C--CcEEEEECCEE
Confidence 00 0 00000112334566776 88899999998655 4444431 2 22347999999
Q ss_pred EEccCCCCCCccCCCCCCC------CCC---ccEEEeeecCCCC-------CCCCCEEEEEecCCcHHHHHHHHhccCCE
Q 013303 159 VVCNGHFSVPRLAQVPGID------SWP---GKQMHSHNYRIPN-------PFQDQVVILIGHYASGLDIKRDLAGFAKE 222 (446)
Q Consensus 159 VvAtG~~s~p~~p~i~G~~------~~~---g~~~hs~~~~~~~-------~~~~k~VvVVG~G~sg~eia~~l~~~~~~ 222 (446)
|+||| +.|..|++||.+ .|. ..++++..+.+.. ...+++|+|||+|.+|+|+|..|++.|.+
T Consensus 142 viAtG--~~p~~p~i~G~~~~~~~~~f~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~ 219 (490)
T 2bc0_A 142 IFATG--SQPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKE 219 (490)
T ss_dssp EECCC--EEECCCSCBTCCBCTTCTTCCBSSTTEEECSSHHHHHHHHHHTTSTTCCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred EECCC--CCcCCCCCCCccccccccccccccCCEEEeCCHHHHHHHHHHhhhcCCceEEEECCCHHHHHHHHHHHHCCCe
Confidence 99999 889999999987 342 2355543332211 14689999999999999999999999999
Q ss_pred EEEEEecCCc------c----cc-ccCCCC-CCeeeccceeEEccCCc---EEecCCcEEeecEEEEecCccCCCCCCCC
Q 013303 223 VHIASRSVAD------E----TH-EKQPGY-DNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGYKYNYPFLET 287 (446)
Q Consensus 223 V~l~~r~~~~------~----~~-~~~~~~-~~v~~~~~v~~i~~~~~---v~~~dG~~~~~D~vi~atG~~~~~~~l~~ 287 (446)
|+++.+.+.. . .+ +.+.+. .++.....|.++..++. +.+ ||+++++|.||+|+|++|+.++++.
T Consensus 220 Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~~~ll~~ 298 (490)
T 2bc0_A 220 VVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAGNGKVEKIIT-DKNEYDVDMVILAVGFRPNTTLGNG 298 (490)
T ss_dssp EEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEETCCEEEEECSSSCCEEEE-SSCEEECSEEEECCCEEECCGGGTT
T ss_pred EEEEEcccchhhhHHHHHHHHHHHHHHHhCCeEEEeCCEEEEEEcCCcEEEEEE-CCcEEECCEEEECCCCCcChHHHHh
Confidence 9999987641 0 11 111222 25666778999976543 444 8889999999999999999987643
Q ss_pred ------CCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-----------CchhHHHHHHHHHHHHHcCCC
Q 013303 288 ------NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-----------IPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 288 ------~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~~~~qa~~~a~~l~g~~ 344 (446)
.|.|.+|++.+ ++.|+||++|++... ...+.+..||+.+|.++.|..
T Consensus 299 ~l~~~~~G~I~Vd~~~~----------t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~ 362 (490)
T 2bc0_A 299 KIDLFRNGAFLVNKRQE----------TSIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACGTD 362 (490)
T ss_dssp CSCBCTTSCBCCCTTCB----------CSSTTEEECGGGBCEEETTTTEEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred hhccCCCCCEEECCCcc----------cCCCCEEEeeeeEEeccccCCceeecccHHHHHHHHHHHHHHhcCCC
Confidence 34455555544 458999999988642 345778999999999999863
No 40
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.97 E-value=2.1e-32 Score=274.95 Aligned_cols=298 Identities=17% Similarity=0.221 Sum_probs=197.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~ 80 (446)
++||+|||||++|+++|..|++.|++|+|||+. .+||.|... ||.|++.++... .+..++ ......+.+
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~--------g~~p~k~l~~~~~~~~~~~-~~~~~g~~~ 72 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNV--------GCIPSKALISASHRYEQAK-HSEEMGIKA 72 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHT--------SHHHHHHHHHHHHHHHHHH-TCGGGTEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCc--------CchhhHHHHHHHHHHHHHH-HHHhcCccc
Confidence 579999999999999999999999999999997 899999764 555544332211 111111 000000000
Q ss_pred CCCCCCcCCCCCCCCCCCC-CCH----HHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEE
Q 013303 81 QAYPFVARNYEGSVDLRRY-PGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~-~~~----~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~ 155 (446)
.+...+ ...+ ... ..+.+++.+.+++.+++ ++.++.+. ++ . +.++|...++ ..++.|
T Consensus 73 ~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~-id--~-~~v~V~~~~G---~~~i~~ 134 (455)
T 1ebd_A 73 ENVTID---------FAKVQEWKASVVKKLTGGVEGLLKGNKVE--IVKGEAYF-VD--A-NTVRVVNGDS---AQTYTF 134 (455)
T ss_dssp CSCEEC---------HHHHHHHHHHHHHHHHHHHHHHHHTTTCE--EEESEEEE-EE--T-TEEEEEETTE---EEEEEC
T ss_pred CCCccC---------HHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEE-cc--C-CeEEEEeCCC---cEEEEe
Confidence 000000 0000 001 12444556667777776 77776553 43 2 4566654322 147899
Q ss_pred cEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc---
Q 013303 156 DAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD--- 232 (446)
Q Consensus 156 d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~--- 232 (446)
|+||+||| +.|..|+++|.+. .+.++.+...... .+++|+|||+|.+|+|+|..|++.|.+|+++.+.+..
T Consensus 135 d~lViATG--s~p~~~~~~g~~~---~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~ 208 (455)
T 1ebd_A 135 KNAIIATG--SRPIELPNFKFSN---RILDSTGALNLGE-VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG 208 (455)
T ss_dssp SEEEECCC--EEECCBTTBCCCS---SEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred CEEEEecC--CCCCCCCCCCccc---eEecHHHHhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc
Confidence 99999999 8899999888754 3556555433322 4699999999999999999999999999999987641
Q ss_pred --cc----c-ccCCCC-CCeeeccceeEEccCC-c--EEec---CCcEEeecEEEEecCccCCCCCC--CC-------CC
Q 013303 233 --ET----H-EKQPGY-DNMWLHSMVERANEDG-T--VVFR---NGRVVSADVIMHCTGYKYNYPFL--ET-------NG 289 (446)
Q Consensus 233 --~~----~-~~~~~~-~~v~~~~~v~~i~~~~-~--v~~~---dG~~~~~D~vi~atG~~~~~~~l--~~-------~g 289 (446)
.. + +.+.+. -++..+..|.++..++ . +.+. +++++++|.||+|+|++|+.++| +. .|
T Consensus 209 ~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G 288 (455)
T 1ebd_A 209 FEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRG 288 (455)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTS
T ss_pred cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCC
Confidence 00 1 111122 2566667888887543 2 4444 45679999999999999999884 33 23
Q ss_pred eeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303 290 IVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 290 ~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~ 343 (446)
.|.+|++++ ++.|+||++|++... ...+.+..||+.+|.++.|.
T Consensus 289 ~i~vd~~~~----------t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 333 (455)
T 1ebd_A 289 LIEVDQQCR----------TSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAGH 333 (455)
T ss_dssp CBCCCTTCB----------CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTSC
T ss_pred CEeeCCCcc----------cCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 455554433 458999999998653 34577899999999999985
No 41
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=99.97 E-value=1.1e-31 Score=272.59 Aligned_cols=302 Identities=17% Similarity=0.166 Sum_probs=202.1
Q ss_pred CCCeEEEECcChHHHHHHHHHHHC---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRE 76 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~---g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~ 76 (446)
|.+||+|||||++|+++|..|++. |++|+|||+++ +||+|... ||.|++.++.+. .+..+.
T Consensus 1 M~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~--------g~~psk~l~~~a~~~~~~~------ 65 (499)
T 1xdi_A 1 MVTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLD--------DCVPSKTFIASTGLRTELR------ 65 (499)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHT--------SHHHHHHHHHHHHHHHHHT------
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCc--------CccchHHHHHHHHHHHHHH------
Confidence 568999999999999999999999 99999999987 99998864 555544332221 111100
Q ss_pred CcccCCCCCCcCCCCCCCCCCCCCCHHH-----------HHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC-CceEEEEE
Q 013303 77 LMGFQAYPFVARNYEGSVDLRRYPGHEE-----------VLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSR 144 (446)
Q Consensus 77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~-----------v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~-~~~~v~~~ 144 (446)
.+..+.++.. ......+... +..++.++.++.+++ ++.++ +..+++..+ +...+.+.
T Consensus 66 --~~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~-~~~i~~~~~~~~~~~~V~ 134 (499)
T 1xdi_A 66 --RAPHLGFHID------FDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQ--VIAGR-GELIDSTPGLARHRIKAT 134 (499)
T ss_dssp --TTTTTTBC------------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESE-EEECCSSSCCSSEEEEEE
T ss_pred --HHHhCCCccc------cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeE-EEEecCcccCCCCEEEEE
Confidence 0111111100 0000112233 333456667777877 77665 665543100 01334443
Q ss_pred eCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEE
Q 013303 145 KKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVH 224 (446)
Q Consensus 145 ~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~ 224 (446)
..+++..++.||+||+||| +.|..|+++|.+.. .++++.+...... .+++|+|||+|.+|+|+|..+++.+.+|+
T Consensus 135 ~~~g~~~~~~~d~lviATG--s~p~~p~i~g~~~~--~v~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~g~~Vt 209 (499)
T 1xdi_A 135 AADGSTSEHEADVVLVATG--ASPRILPSAQPDGE--RILTWRQLYDLDA-LPDHLIVVGSGVTGAEFVDAYTELGVPVT 209 (499)
T ss_dssp CTTSCEEEEEESEEEECCC--EEECCCGGGCCCSS--SEEEGGGGGGCSS-CCSSEEEESCSHHHHHHHHHHHHTTCCEE
T ss_pred eCCCcEEEEEeCEEEEcCC--CCCCCCCCCCCCcC--cEEehhHhhhhhc-cCCeEEEECCCHHHHHHHHHHHHcCCeEE
Confidence 3333224689999999999 88999999997642 3566655544332 46899999999999999999999999999
Q ss_pred EEEecCCc-----c----cc-ccCCCC-CCeeeccceeEEccCC-c--EEecCCcEEeecEEEEecCccCCCCC--CCCC
Q 013303 225 IASRSVAD-----E----TH-EKQPGY-DNMWLHSMVERANEDG-T--VVFRNGRVVSADVIMHCTGYKYNYPF--LETN 288 (446)
Q Consensus 225 l~~r~~~~-----~----~~-~~~~~~-~~v~~~~~v~~i~~~~-~--v~~~dG~~~~~D~vi~atG~~~~~~~--l~~~ 288 (446)
++.+.+.. . .+ +.+.+. .++..+..|.++..++ . +.+.||+++++|.||+|+|++|+.++ ++..
T Consensus 210 lv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~ 289 (499)
T 1xdi_A 210 VVASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERV 289 (499)
T ss_dssp EECSSSSSSCCSSHHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCSSSCTTTT
T ss_pred EEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCCCcCCchhc
Confidence 99987641 0 11 111122 2566677899987654 2 55678889999999999999999988 4332
Q ss_pred -------CeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303 289 -------GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 289 -------g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~ 343 (446)
|.|.+|+.++ ++.|+||++|++... ...+.+..||+.+|.++.|.
T Consensus 290 gl~~~~~G~i~Vd~~~~----------t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 342 (499)
T 1xdi_A 290 GIQLGRGNYLTVDRVSR----------TLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGE 342 (499)
T ss_dssp TCCCBTTTBCCCCSSSB----------CSSTTEEECSGGGTSCSCHHHHHHHHHHHHHHHTTC
T ss_pred CceECCCCCEEECCCcc----------cCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence 3455554443 458999999998754 34577899999999999986
No 42
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=99.97 E-value=4.5e-32 Score=274.34 Aligned_cols=296 Identities=16% Similarity=0.177 Sum_probs=198.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~ 80 (446)
.+||+|||||++|+++|..|++.|++|+|||+.+.+||.|... ||.|++.++... .+..+.. ... +
T Consensus 6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~--------g~~psk~ll~~~~~~~~~~~-~~~--~-- 72 (482)
T 1ojt_A 6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNV--------GCIPSKALLHNAAVIDEVRH-LAA--N-- 72 (482)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHH--------SHHHHHHHHHHHHHHHHHHH-GGG--G--
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeee--------cccchHHHHHHHHHHHHHHH-HHh--C--
Confidence 3689999999999999999999999999999988999998764 454443322211 1111100 000 0
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC---
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVL-----------RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK--- 146 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~-----------~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~--- 146 (446)
..++.. .......+. +.+...+++.+++ ++.++.+. + .. +.+.|...++
T Consensus 73 -gi~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~-~--~~-~~v~v~~~~g~~~ 135 (482)
T 1ojt_A 73 -GIKYPE----------PELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVD--VIQGDGQF-L--DP-HHLEVSLTAGDAY 135 (482)
T ss_dssp -TCCCCC----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEEEEEEE-E--ET-TEEEEEEEEEEET
T ss_pred -CcccCC----------CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEeeEEEE-c--cC-CEEEEEecCCccc
Confidence 011100 011122222 2344556667776 77766544 2 22 4566654433
Q ss_pred -----CCceEEEEEcEEEEccCCCCCCccCC-CCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccC
Q 013303 147 -----DDVVEEETFDAVVVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFA 220 (446)
Q Consensus 147 -----~~~~~~~~~d~VVvAtG~~s~p~~p~-i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~ 220 (446)
+++..++.||+||+||| +.|..|+ ++ .+. .++++.+...... .+++|+|||+|.+|+|+|..|++.|
T Consensus 136 ~~~~~~g~~~~i~ad~lViAtG--s~p~~~~~i~-~~~---~v~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~G 208 (482)
T 1ojt_A 136 EQAAPTGEKKIVAFKNCIIAAG--SRVTKLPFIP-EDP---RIIDSSGALALKE-VPGKLLIIGGGIIGLEMGTVYSTLG 208 (482)
T ss_dssp TEEEEEEEEEEEEEEEEEECCC--EEECCCSSCC-CCT---TEECHHHHTTCCC-CCSEEEEESCSHHHHHHHHHHHHHT
T ss_pred ccccccCcceEEEcCEEEECCC--CCCCCCCCCC-ccC---cEEcHHHHhcccc-cCCeEEEECCCHHHHHHHHHHHHcC
Confidence 12234789999999999 7788776 55 332 4666665544332 4799999999999999999999999
Q ss_pred CEEEEEEecCC-----cc----cc-ccCCCCC-CeeeccceeEEccCC---cEEecC----CcEEeecEEEEecCccCCC
Q 013303 221 KEVHIASRSVA-----DE----TH-EKQPGYD-NMWLHSMVERANEDG---TVVFRN----GRVVSADVIMHCTGYKYNY 282 (446)
Q Consensus 221 ~~V~l~~r~~~-----~~----~~-~~~~~~~-~v~~~~~v~~i~~~~---~v~~~d----G~~~~~D~vi~atG~~~~~ 282 (446)
.+|+++.+.+. +. .+ +.+.+.+ ++..+..|.++..++ .+.+.| |+++++|.||+|+|++|+.
T Consensus 209 ~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~ 288 (482)
T 1ojt_A 209 SRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNG 288 (482)
T ss_dssp CEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECG
T ss_pred CeEEEEEECCccccccCHHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCC
Confidence 99999998864 11 11 1112222 455667888887543 267777 7889999999999999998
Q ss_pred CCC--CC-------CCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCCC
Q 013303 283 PFL--ET-------NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 283 ~~l--~~-------~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~~ 344 (446)
++| +. .|.|.+|++++ ++.|+||++|++... ...+.+..||+.+|.++.|..
T Consensus 289 ~~l~~~~~gl~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~ 350 (482)
T 1ojt_A 289 KLISAEKAGVAVTDRGFIEVDKQMR----------TNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGHK 350 (482)
T ss_dssp GGTTGGGTTCCCCTTSCCCCCTTSB----------CSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred CCCChhhcCceeCCCCCEeeCCCcc----------cCCCCEEEEEcccCCCccHHHHHHHHHHHHHHHcCCC
Confidence 874 32 34566665544 558999999998753 446788999999999999853
No 43
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=99.97 E-value=4.8e-31 Score=265.82 Aligned_cols=297 Identities=21% Similarity=0.225 Sum_probs=193.7
Q ss_pred CeEEEECcChHHHHHHHHHHHCC-----CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCce-eecCCCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREG-----HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSL-RVNLPRE 76 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g-----~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l-~~~~~~~ 76 (446)
+||+|||||++||++|..|++.| ++|+|||+.+.+| |....... ++ ....+.+..+ ....|..
T Consensus 31 ~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g--~~~~~~~~----~~-----~~~~~~~~~l~~~~~p~~ 99 (463)
T 3s5w_A 31 HDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNTLVS----QS-----ELQISFLKDLVSLRNPTS 99 (463)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC--SSGGGCCS----SC-----BCSSCTTSSSSTTTCTTC
T ss_pred CCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC--CcCCCCCC----CC-----cCCcchhhccccccCCCC
Confidence 48999999999999999999999 9999999999887 44321000 00 0000011111 0111222
Q ss_pred CcccCCCCCCcCC-CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcC--CCce--EEEEEeCCCceE
Q 013303 77 LMGFQAYPFVARN-YEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE--SNKW--KVKSRKKDDVVE 151 (446)
Q Consensus 77 ~~~~~d~~~~~~~-~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~--~~~~--~v~~~~~~~~~~ 151 (446)
.+.|.++...... .+.......|+++.++.+|+..++++++.. ++++++|++|++.. ++.| +|++.++.++..
T Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~ 177 (463)
T 3s5w_A 100 PYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQ--SRYGEEVLRIEPMLSAGQVEALRVISRNADGEEL 177 (463)
T ss_dssp TTSHHHHHHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTT--EEESEEEEEEEEEEETTEEEEEEEEEEETTSCEE
T ss_pred CCChhHhhhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEEecCCCceEEEEEEEecCCCceE
Confidence 2222111000000 000011346788999999999999999877 99999999998762 1455 666666655556
Q ss_pred EEEEcEEEEccCCCCCCccCCCCCCCCCCc--cEEEeeecCC-CCCC-----CCCEEEEEecCCcHHHHHHHHhcc--CC
Q 013303 152 EETFDAVVVCNGHFSVPRLAQVPGIDSWPG--KQMHSHNYRI-PNPF-----QDQVVILIGHYASGLDIKRDLAGF--AK 221 (446)
Q Consensus 152 ~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g--~~~hs~~~~~-~~~~-----~~k~VvVVG~G~sg~eia~~l~~~--~~ 221 (446)
++.||+||+||| +.|.+|.. ++.+.+ .++|+..+.. ...+ ++++|+|||+|.+|+|+|..|++. +.
T Consensus 178 ~~~~d~lVlAtG--~~p~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~ 253 (463)
T 3s5w_A 178 VRTTRALVVSPG--GTPRIPQV--FRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSV 253 (463)
T ss_dssp EEEESEEEECCC--CEECCCGG--GGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTE
T ss_pred EEEeCEEEECCC--CCCCCcch--hhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCC
Confidence 899999999999 67777762 334445 6889887754 2334 689999999999999999999998 99
Q ss_pred EEEEEEecCCc------------------------------cccccCC---------------------------CCCCe
Q 013303 222 EVHIASRSVAD------------------------------ETHEKQP---------------------------GYDNM 244 (446)
Q Consensus 222 ~V~l~~r~~~~------------------------------~~~~~~~---------------------------~~~~v 244 (446)
+|+++.|++.. ..+.... ....+
T Consensus 254 ~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i 333 (463)
T 3s5w_A 254 QADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAF 333 (463)
T ss_dssp EEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEE
T ss_pred eEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 99999998730 0001111 11235
Q ss_pred eeccceeEEccCCc---EEec---CCcE--EeecEEEEecCccCC--CCCCCCC----CeeeeCCCCcccccccccCCCC
Q 013303 245 WLHSMVERANEDGT---VVFR---NGRV--VSADVIMHCTGYKYN--YPFLETN----GIVTVDDNRVGPLYKHVFPPVL 310 (446)
Q Consensus 245 ~~~~~v~~i~~~~~---v~~~---dG~~--~~~D~vi~atG~~~~--~~~l~~~----g~i~~~~~~~~~l~~~~~~~~~ 310 (446)
.....|+++..++. +.+. +|+. +++|.||+|||++|+ .++|... |.+.+|+..+... ....
T Consensus 334 ~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~g~i~v~~~~~~~~-----~~~~ 408 (463)
T 3s5w_A 334 RCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYLGDHEIGRDYRLQT-----DERC 408 (463)
T ss_dssp ETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGGBC--CCCTTSBCCB-----CTTB
T ss_pred EeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHHhCCcccCccccccc-----CCCC
Confidence 55667888865432 5665 7765 889999999999999 6776532 4566776654211 1122
Q ss_pred CCCeEEecCCC
Q 013303 311 APGLSFVGIPQ 321 (446)
Q Consensus 311 ~p~l~~iG~~~ 321 (446)
.|+||++|++.
T Consensus 409 ~~~Ifa~G~~~ 419 (463)
T 3s5w_A 409 KVAIYAQGFSQ 419 (463)
T ss_dssp CSEEEESSCCH
T ss_pred CCeEEEcCCCc
Confidence 57899999864
No 44
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=99.97 E-value=1.4e-32 Score=275.50 Aligned_cols=288 Identities=17% Similarity=0.246 Sum_probs=194.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-CceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~~~~~~~~~~ 80 (446)
++||+|||||++|+++|..|++.|++|+|||++ .+||+|.+. ||.|++.++.+..+ ..++.+.+
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~--------gciP~k~l~~~a~~~~~~~~~~~------ 68 (450)
T 1ges_A 4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNV--------GCVPKKVMWHAAQIREAIHMYGP------ 68 (450)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHH--------SHHHHHHHHHHHHHHHHHHTTGG------
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCccccc--------CccChHHHHHHHHHHHHHHHHHH------
Confidence 479999999999999999999999999999997 799999864 56665433322211 10100000
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHH-----------HHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYL-----------QNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl-----------~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~ 149 (446)
.|.+... ....+..++.++. ....++.+++ +..++ +..++ .++|.+ ++
T Consensus 69 -~~g~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~-~~~i~-----~~~v~~-~g--- 127 (450)
T 1ges_A 69 -DYGFDTT--------INKFNWETLIASRTAYIDRIHTSYENVLGKNNVD--VIKGF-ARFVD-----AKTLEV-NG--- 127 (450)
T ss_dssp -GGTEEEE--------EEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESC-CEEEE-----TTEEEE-TT---
T ss_pred -hcCccCC--------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeE-EEEec-----CCEEEE-CC---
Confidence 0100000 0001223333332 3333455665 55553 34443 245655 22
Q ss_pred eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
.++.||+||+||| +.|..|++||.+. ..++.++..... .+++|+|||+|.+|+|+|..|++.|.+|+++.+.
T Consensus 128 -~~~~~d~lviAtG--s~p~~p~i~g~~~----~~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 199 (450)
T 1ges_A 128 -ETITADHILIATG--GRPSHPDIPGVEY----GIDSDGFFALPA-LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMF 199 (450)
T ss_dssp -EEEEEEEEEECCC--EEECCCCSTTGGG----SBCHHHHHHCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred -EEEEeCEEEECCC--CCCCCCCCCCccc----eecHHHhhhhhh-cCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 3789999999999 8899999998742 334444322222 3689999999999999999999999999999987
Q ss_pred CC-----ccc----c-ccCCCC-CCeeeccceeEEccC--C--cEEecCCcEEeecEEEEecCccCCCCCC---------
Q 013303 230 VA-----DET----H-EKQPGY-DNMWLHSMVERANED--G--TVVFRNGRVVSADVIMHCTGYKYNYPFL--------- 285 (446)
Q Consensus 230 ~~-----~~~----~-~~~~~~-~~v~~~~~v~~i~~~--~--~v~~~dG~~~~~D~vi~atG~~~~~~~l--------- 285 (446)
+. +.. + +.+.+. .++..+..|.++..+ + .|.+.||+++++|.||+|+|++|+.++|
T Consensus 200 ~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~ 279 (450)
T 1ges_A 200 DAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKT 279 (450)
T ss_dssp SSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCB
T ss_pred CchhhhhhHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceE
Confidence 64 100 1 111111 255667788888754 2 3778899999999999999999999854
Q ss_pred CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303 286 ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 286 ~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~ 343 (446)
++.|.|.+|+.++ ++.|+||++|++.. ....+.+..||+.+|.++.|.
T Consensus 280 ~~~g~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 328 (450)
T 1ges_A 280 NEKGYIVVDKYQN----------TNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNN 328 (450)
T ss_dssp CTTSCBCCCTTSB----------CSSTTEEECSGGGTSCCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCEeECCCCc----------cCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence 2345566666654 55899999999864 345678899999999999874
No 45
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=99.97 E-value=6.7e-32 Score=279.80 Aligned_cols=277 Identities=17% Similarity=0.295 Sum_probs=199.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~ 79 (446)
+++|+|||||+|||+||..|++. |.+|+|||+++.+| |... +
T Consensus 36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~--~~~~----------------------------------~ 79 (588)
T 3ics_A 36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS--FANC----------------------------------G 79 (588)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS--BCGG----------------------------------G
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc--ccCC----------------------------------C
Confidence 57999999999999999999998 89999999987654 1100 0
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEE
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAV 158 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~V 158 (446)
+ |+... ....+....+..++..+++++++. ++++++|+.+++.. . ++.+.+. .+...++.||+|
T Consensus 80 l---p~~~~-------g~~~~~~~~~~~~~~~~~~~~gi~--v~~~~~V~~id~~~-~--~v~v~~~~~g~~~~~~~d~l 144 (588)
T 3ics_A 80 L---PYYIG-------GVITERQKLLVQTVERMSKRFNLD--IRVLSEVVKINKEE-K--TITIKNVTTNETYNEAYDVL 144 (588)
T ss_dssp H---HHHHT-------TSSCCGGGGBSSCHHHHHHHTTCE--EECSEEEEEEETTT-T--EEEEEETTTCCEEEEECSEE
T ss_pred C---chhhc-------CcCCChHHhhccCHHHHHHhcCcE--EEECCEEEEEECCC-C--EEEEeecCCCCEEEEeCCEE
Confidence 0 00000 000011223456678888889988 89999999998755 3 4444432 234457899999
Q ss_pred EEccCCCCCCccCCCCCCCCCCccEEEeeecCCCC-------CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN-------PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~-------~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
|+||| +.|..|++||.+...+ ++++..+.+.. ...+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.
T Consensus 145 viAtG--~~p~~p~i~G~~~~~~-v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 221 (588)
T 3ics_A 145 ILSPG--AKPIVPSIPGIEEAKA-LFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQ 221 (588)
T ss_dssp EECCC--EEECCCCCTTTTTCTT-EEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred EECCC--CCCCCCCCCCcccCCC-eEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCc
Confidence 99999 8999999999844333 44433322211 13579999999999999999999999999999998764
Q ss_pred c-----c----cc-ccCCCC-CCeeeccceeEEccC-CcEEecCCcEEeecEEEEecCccCCCCCCC-------CCCeee
Q 013303 232 D-----E----TH-EKQPGY-DNMWLHSMVERANED-GTVVFRNGRVVSADVIMHCTGYKYNYPFLE-------TNGIVT 292 (446)
Q Consensus 232 ~-----~----~~-~~~~~~-~~v~~~~~v~~i~~~-~~v~~~dG~~~~~D~vi~atG~~~~~~~l~-------~~g~i~ 292 (446)
. . .+ +.+.+. .++.....|.++..+ +.|.+.||+++++|.||+|||+.|+.++++ +.|.|.
T Consensus 222 ~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~ 301 (588)
T 3ics_A 222 VMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAVVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIK 301 (588)
T ss_dssp SCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTEEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBC
T ss_pred ccccCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCCEEEECCCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEE
Confidence 0 0 11 111112 255667789998753 348999999999999999999999987653 345566
Q ss_pred eCCCCcccccccccCCCCCCCeEEecCCCc-----------cCchhHHHHHHHHHHHHHcC
Q 013303 293 VDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-----------VIPFPFFELQSKWIASVLSG 342 (446)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-----------~~~~~~~~~qa~~~a~~l~g 342 (446)
+|+..+ ++.|+||++|++.. ....+.+..||+.+|+++.|
T Consensus 302 vd~~~~----------t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 352 (588)
T 3ics_A 302 VNEKFQ----------TSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHG 352 (588)
T ss_dssp CCTTSB----------CSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTT
T ss_pred ECCccc----------cCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhcC
Confidence 666555 55899999998762 12446789999999999998
No 46
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=99.97 E-value=3.4e-32 Score=275.64 Aligned_cols=297 Identities=17% Similarity=0.217 Sum_probs=197.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEee--------CCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK--------GEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL 73 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~--------~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~ 73 (446)
.+||+||||||||++||..|++.|++|+|||+ ...+||+|.+. ||.|++.+..+..+.....+
T Consensus 6 ~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~--------gciPsk~l~~~~~~~~~~~~- 76 (488)
T 3dgz_A 6 SFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNV--------GCIPKKLMHQAALLGGMIRD- 76 (488)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHH--------SHHHHHHHHHHHHHHHHHHH-
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeeccc--------CCcccHHHHHHHHHHHHHHH-
Confidence 47999999999999999999999999999997 56799999875 67776544332221111110
Q ss_pred CCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----------hCCCCcEEeCeEEEEEEEcCCCceEEE
Q 013303 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-----------FGVDQVVRLHTEVLNARLVESNKWKVK 142 (446)
Q Consensus 74 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-----------~~l~~~i~~~~~V~~v~~~~~~~~~v~ 142 (446)
...|.+... ....+...++.++..++.++ .+++ + +..++..+ +.+.+.
T Consensus 77 ------~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~-i~g~~~~~-----~~~~v~ 135 (488)
T 3dgz_A 77 ------AHHYGWEVA-------QPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVK--Y-FNIKASFV-----DEHTVR 135 (488)
T ss_dssp ------HHHTTCCCC-------SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--E-ECCEEEES-----SSSEEE
T ss_pred ------HHhcCcccC-------CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--E-EEEEEEEc-----cCCeEE
Confidence 111111110 12234455666665544432 3433 2 23333332 223444
Q ss_pred EEeCCCceEEEEEcEEEEccCCCCCCccCC-CCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCC
Q 013303 143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK 221 (446)
Q Consensus 143 ~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~-i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~ 221 (446)
+...+++..++.||+|||||| +.|..|+ +||.+. ..+++.++.... ..+++|+|||+|.+|+|+|..|++.+.
T Consensus 136 v~~~~g~~~~~~~d~lViATG--s~p~~p~~i~G~~~---~~~~~~~~~~~~-~~~~~vvViGgG~ig~E~A~~l~~~g~ 209 (488)
T 3dgz_A 136 GVDKGGKATLLSAEHIVIATG--GRPRYPTQVKGALE---YGITSDDIFWLK-ESPGKTLVVGASYVALECAGFLTGIGL 209 (488)
T ss_dssp EECTTSCEEEEEEEEEEECCC--EEECCCSSCBTHHH---HCBCHHHHTTCS-SCCCSEEEECCSHHHHHHHHHHHHTTC
T ss_pred EEeCCCceEEEECCEEEEcCC--CCCCCCCCCCCccc---ccCcHHHHHhhh-hcCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 444444456899999999999 8999998 999753 234444444332 246789999999999999999999999
Q ss_pred EEEEEEecCC----ccc----c-ccCCCC-CCeeeccceeEEcc--CCc--EEecC---Cc--EEeecEEEEecCccCCC
Q 013303 222 EVHIASRSVA----DET----H-EKQPGY-DNMWLHSMVERANE--DGT--VVFRN---GR--VVSADVIMHCTGYKYNY 282 (446)
Q Consensus 222 ~V~l~~r~~~----~~~----~-~~~~~~-~~v~~~~~v~~i~~--~~~--v~~~d---G~--~~~~D~vi~atG~~~~~ 282 (446)
+|+++.+... +.. + +.+.+. -++.....+.++.. ++. +.+.+ |+ ++++|.||+|+|++|+.
T Consensus 210 ~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~ 289 (488)
T 3dgz_A 210 DTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPET 289 (488)
T ss_dssp CEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESC
T ss_pred ceEEEEcCcccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCccc
Confidence 9999998643 111 1 111112 25556667777754 222 55655 55 46899999999999999
Q ss_pred CCCC----------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc--cCchhHHHHHHHHHHHHHcCCC
Q 013303 283 PFLE----------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK--VIPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 283 ~~l~----------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~--~~~~~~~~~qa~~~a~~l~g~~ 344 (446)
++|. +.|.|.+|++++ ++.|+||++|++.. ....+.+..||+.+|.++.|..
T Consensus 290 ~~l~l~~~g~~~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~ 353 (488)
T 3dgz_A 290 RTLNLEKAGISTNPKNQKIIVDAQEA----------TSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKS 353 (488)
T ss_dssp GGGTGGGGTCCBCSSSCCBCCCTTSB----------CSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHSCC
T ss_pred CcCCccccCcEecCCCCeEeECCCCc----------cCCCCEEEeEEecCCCCcchhHHHHHHHHHHHHHcCCC
Confidence 8742 345566665554 55899999999852 3445788999999999998853
No 47
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=99.97 E-value=1.1e-31 Score=277.14 Aligned_cols=278 Identities=17% Similarity=0.216 Sum_probs=196.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~ 79 (446)
|++|+|||||+|||++|..|++. +.+|+|||+++.++..... ++ .+
T Consensus 1 M~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~-----------------l~--~~------------- 48 (565)
T 3ntd_A 1 MKKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCG-----------------LP--YH------------- 48 (565)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGG-----------------HH--HH-------------
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccC-----------------ch--HH-------------
Confidence 47999999999999999999998 7899999998765411000 00 00
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEE
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAV 158 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~V 158 (446)
+. ....+....+.+++..+++++++. ++++++|+++++.. . .+++.+. .+...++.||+|
T Consensus 49 ~~--------------~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~V~~id~~~-~--~v~~~~~~~g~~~~~~~d~l 109 (565)
T 3ntd_A 49 IS--------------GEIAQRSALVLQTPESFKARFNVE--VRVKHEVVAIDRAA-K--LVTVRRLLDGSEYQESYDTL 109 (565)
T ss_dssp HT--------------SSSCCGGGGBCCCHHHHHHHHCCE--EETTEEEEEEETTT-T--EEEEEETTTCCEEEEECSEE
T ss_pred hc--------------CCcCChHHhhccCHHHHHHhcCcE--EEECCEEEEEECCC-C--EEEEEecCCCCeEEEECCEE
Confidence 00 000011233445677778888988 88999999998755 3 4444442 233457899999
Q ss_pred EEccCCCCCCccCCCCCCCCCCccEEEeeecCCC-------CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~-------~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
|+||| +.|+.|++||.+.. .+.+.....+. ....+++|+|||+|.+|+|+|..|++.|.+|+++.+.+.
T Consensus 110 viAtG--~~p~~p~ipG~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 185 (565)
T 3ntd_A 110 LLSPG--AAPIVPPIPGVDNP--LTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQ 185 (565)
T ss_dssp EECCC--EEECCCCCTTCCST--TEECCSSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred EECCC--CCCCCCCCCCCCCC--CEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCc
Confidence 99999 79999999998642 23333222111 114578999999999999999999999999999999875
Q ss_pred c-----cc----c-ccCCCC-CCeeeccceeEEcc--------------------CCc--EEecCCcEEeecEEEEecCc
Q 013303 232 D-----ET----H-EKQPGY-DNMWLHSMVERANE--------------------DGT--VVFRNGRVVSADVIMHCTGY 278 (446)
Q Consensus 232 ~-----~~----~-~~~~~~-~~v~~~~~v~~i~~--------------------~~~--v~~~dG~~~~~D~vi~atG~ 278 (446)
. .. + +.+.+. .++.....|.++.. ++. +.+.||+++++|.||+|||+
T Consensus 186 ~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 265 (565)
T 3ntd_A 186 VMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGV 265 (565)
T ss_dssp SCTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCE
T ss_pred cchhcCHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCC
Confidence 1 11 1 111112 25566678888865 222 67789999999999999999
Q ss_pred cCCCCCC-------CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc------c-----CchhHHHHHHHHHHHHH
Q 013303 279 KYNYPFL-------ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK------V-----IPFPFFELQSKWIASVL 340 (446)
Q Consensus 279 ~~~~~~l-------~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~------~-----~~~~~~~~qa~~~a~~l 340 (446)
+|+.+++ ++.|.|.+|+.++ ++.|+||++|++.. + ...+.+..||+.+|+++
T Consensus 266 ~p~~~l~~~~g~~~~~~g~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i 335 (565)
T 3ntd_A 266 RPETQLARDAGLAIGELGGIKVNAMMQ----------TSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNM 335 (565)
T ss_dssp EECCHHHHHHTCCBCTTSSBCCCTTCB----------CSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHH
T ss_pred ccchHHHHhCCcccCCCCCEEECCCcc----------cCCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHh
Confidence 9998764 3445666666555 55899999998752 1 23567899999999999
Q ss_pred cCCC
Q 013303 341 SGRI 344 (446)
Q Consensus 341 ~g~~ 344 (446)
.|+.
T Consensus 336 ~g~~ 339 (565)
T 3ntd_A 336 FGRE 339 (565)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 9864
No 48
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=99.97 E-value=7e-32 Score=269.17 Aligned_cols=279 Identities=15% Similarity=0.161 Sum_probs=191.2
Q ss_pred CeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303 3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~ 80 (446)
.+|+|||||+||++||..|++.| .+|+|||+++..++.... ++ .+.
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~-----------------l~-----~~~---------- 48 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCA-----------------LP-----YVI---------- 48 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGG-----------------HH-----HHH----------
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcch-----------------hH-----HHH----------
Confidence 37999999999999999999988 579999997654321100 00 000
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVV 159 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VV 159 (446)
....... ...+... ..++.+++++. ++.+++|+.|+... ..+++.... ++..++.||+||
T Consensus 49 ~~~~~~~--------~~~~~~~------~~~~~~~~~i~--~~~~~~V~~id~~~---~~~~~~~~~~~~~~~~~yd~lV 109 (437)
T 4eqs_A 49 GEVVEDR--------RYALAYT------PEKFYDRKQIT--VKTYHEVIAINDER---QTVSVLNRKTNEQFEESYDKLI 109 (437)
T ss_dssp TTSSCCG--------GGTBCCC------HHHHHHHHCCE--EEETEEEEEEETTT---TEEEEEETTTTEEEEEECSEEE
T ss_pred cCCccch--------hhhhhcC------HHHHHHhcCCE--EEeCCeEEEEEccC---cEEEEEeccCCceEEEEcCEEE
Confidence 0000000 0000000 12345667887 88899999998654 455555443 355678999999
Q ss_pred EccCCCCCCccCCCCCCCCCCccEEEeeec-CCC-CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-----c
Q 013303 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNY-RIP-NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----D 232 (446)
Q Consensus 160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~-~~~-~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-----~ 232 (446)
|||| +.|+.|+++|...+..+.+..... +.. ...++++|+|||+|.+|+|+|..+++.+.+|+++++.+. +
T Consensus 110 IATG--s~p~~p~i~g~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d 187 (437)
T 4eqs_A 110 LSPG--ASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMD 187 (437)
T ss_dssp ECCC--EEECCCCCCCTTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSC
T ss_pred ECCC--CccccccccCceEEeeccHHHHHHHHHhhhccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccccc
Confidence 9999 889999998865432221111100 000 012468999999999999999999999999999999875 1
Q ss_pred ccc-----ccCCCC-CCeeeccceeEEccCCcEEecCCcEEeecEEEEecCccCCCCCCC-------CCCeeeeCCCCcc
Q 013303 233 ETH-----EKQPGY-DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLE-------TNGIVTVDDNRVG 299 (446)
Q Consensus 233 ~~~-----~~~~~~-~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~-------~~g~i~~~~~~~~ 299 (446)
..+ +.+.+. -++..+..|++++.+ .+.+++|+++++|.||+|+|++|+..+++ +.|.|.+|++++
T Consensus 188 ~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~-~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~~- 265 (437)
T 4eqs_A 188 ADMNQPILDELDKREIPYRLNEEINAINGN-EITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFE- 265 (437)
T ss_dssp GGGGHHHHHHHHHTTCCEEESCCEEEEETT-EEEETTSCEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTTCB-
T ss_pred chhHHHHHHHhhccceEEEeccEEEEecCC-eeeecCCeEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCCcc-
Confidence 111 111112 367778889999765 49999999999999999999999988764 345566666655
Q ss_pred cccccccCCCCCCCeEEecCCCcc-----------CchhHHHHHHHHHHHHHcCCCC
Q 013303 300 PLYKHVFPPVLAPGLSFVGIPQKV-----------IPFPFFELQSKWIASVLSGRIV 345 (446)
Q Consensus 300 ~l~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~~~~qa~~~a~~l~g~~~ 345 (446)
++.|+||++|++... ...+.+..||+.+|+++.|...
T Consensus 266 ---------Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~~~ 313 (437)
T 4eqs_A 266 ---------TNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDT 313 (437)
T ss_dssp ---------CSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHSCTT
T ss_pred ---------CCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHcCCCC
Confidence 569999999987532 2346678999999999998743
No 49
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.8e-32 Score=273.24 Aligned_cols=296 Identities=17% Similarity=0.217 Sum_probs=193.4
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-CceeecCCCCCcccC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVNLPRELMGFQ 81 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~~~~~~~~~~~ 81 (446)
+||+|||||++|+++|..|++.|++|+|||++ .+||+|.+. ||.|++.+..+... ..++ +.. .+++.
T Consensus 12 ~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~n~--------gciP~k~l~~~~~~~~~~~-~~~--~~g~~ 79 (479)
T 2hqm_A 12 YDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCVNV--------GCVPKKVMWYASDLATRVS-HAN--EYGLY 79 (479)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHHHH--------SHHHHHHHHHHHHHHHHHT-TTT--TTTBS
T ss_pred CCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCccc--------CcHHHHHHHHHHHHHHHHH-hHH--hcCcc
Confidence 69999999999999999999999999999997 799999864 55554433221111 1110 000 01111
Q ss_pred CC-CCCcCCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303 82 AY-PFVARNYEGSVDLRRYPGHEEVLRY-----------LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (446)
Q Consensus 82 d~-~~~~~~~~~~~~~~~~~~~~~v~~y-----------l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~ 149 (446)
.. ++.. .........+.++ +....++.++. +..+ ++..++ . ..+.|...+ +.
T Consensus 80 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~i~--~-~~~~v~~~~--g~ 143 (479)
T 2hqm_A 80 QNLPLDK--------EHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVD--VVFG-WARFNK--D-GNVEVQKRD--NT 143 (479)
T ss_dssp TTSCCSG--------GGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEE--EEEE-EEEECT--T-SCEEEEESS--SC
T ss_pred ccccccc--------ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEe-EEEEee--C-CEEEEEeCC--Cc
Confidence 00 0000 0011122333332 33334445554 4444 344442 2 445555433 22
Q ss_pred eEEEEEcEEEEccCCCCCCccC-CCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303 150 VEEETFDAVVVCNGHFSVPRLA-QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s~p~~p-~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r 228 (446)
..++.||+||+||| +.|..| ++||.+. .+++.++.... ..+++|+|||+|.+|+|+|..|++.|.+|+++.+
T Consensus 144 ~~~~~~d~lviAtG--s~p~~p~~i~g~~~----~~~~~~~~~l~-~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~ 216 (479)
T 2hqm_A 144 TEVYSANHILVATG--GKAIFPENIPGFEL----GTDSDGFFRLE-EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIR 216 (479)
T ss_dssp CEEEEEEEEEECCC--EEECCCTTSTTGGG----SBCHHHHHHCS-SCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECS
T ss_pred EEEEEeCEEEEcCC--CCCCCCCCCCCccc----ccchHHHhccc-ccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEe
Confidence 34689999999999 889999 8998742 23443332222 2478999999999999999999999999999999
Q ss_pred cCC-----ccc----c-ccCCCC-CCeeeccceeEEccC--C---cEEecCC-cEEeecEEEEecCccCCCCC-CCC---
Q 013303 229 SVA-----DET----H-EKQPGY-DNMWLHSMVERANED--G---TVVFRNG-RVVSADVIMHCTGYKYNYPF-LET--- 287 (446)
Q Consensus 229 ~~~-----~~~----~-~~~~~~-~~v~~~~~v~~i~~~--~---~v~~~dG-~~~~~D~vi~atG~~~~~~~-l~~--- 287 (446)
.+. +.. + +.+.+. .++..+..|.++..+ + .|.++|| +++++|.||+|+|++|+..+ ++.
T Consensus 217 ~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl 296 (479)
T 2hqm_A 217 GETVLRKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGI 296 (479)
T ss_dssp SSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTC
T ss_pred CCccccccCHHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCc
Confidence 864 111 1 111111 256667788888753 3 3778899 78999999999999999855 332
Q ss_pred ----CCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303 288 ----NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 288 ----~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~ 343 (446)
.|.|.+|+.++ ++.|+||++|++.. ....+.+..||+.+|.++.|.
T Consensus 297 ~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (479)
T 2hqm_A 297 KLNSHDQIIADEYQN----------TNVPNIYSLGDVVGKVELTPVAIAAGRKLSNRLFGP 347 (479)
T ss_dssp CBCTTSCBCCCTTCB----------CSSTTEEECGGGTTSSCCHHHHHHHHHHHHHHHHSC
T ss_pred eECCCCCEeECCCCc----------cCCCCEEEEEecCCCcccHHHHHHHHHHHHHHhcCC
Confidence 34555555544 55899999999864 345678899999999999874
No 50
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=99.97 E-value=1.1e-31 Score=271.56 Aligned_cols=296 Identities=20% Similarity=0.212 Sum_probs=196.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC---C------CcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeec
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG---E------QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN 72 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~---~------~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~ 72 (446)
.+||+||||||||++||..|++.|++|+|||+. + .+||+|.+. ||+|++.+..+..+......
T Consensus 9 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~--------gciPsk~l~~~~~~~~~~~~ 80 (483)
T 3dgh_A 9 DYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNV--------GCIPKKLMHQASLLGEAVHE 80 (483)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHH--------SHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeeccc--------CchhhHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999942 1 389999875 67766543332211111000
Q ss_pred CCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----------hCCCCcEEeCeEEEEEEEcCCCceEE
Q 013303 73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-----------FGVDQVVRLHTEVLNARLVESNKWKV 141 (446)
Q Consensus 73 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-----------~~l~~~i~~~~~V~~v~~~~~~~~~v 141 (446)
. ..|.+... ....++..++.++...+++. .++. + +...+..++. ..+.|
T Consensus 81 ~-------~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~-~~g~a~~~~~---~~v~v 140 (483)
T 3dgh_A 81 A-------AAYGWNVD-------DKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVE--Y-INGLGSFVDS---HTLLA 140 (483)
T ss_dssp H-------HHTTBCCC-------CCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--E-ECSEEEEEET---TEEEE
T ss_pred H-------HhcCcccC-------CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--E-EEeEEEEccC---CEEEE
Confidence 0 01111110 11233456666666555443 2333 2 2333333321 33444
Q ss_pred EEEeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCC
Q 013303 142 KSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK 221 (446)
Q Consensus 142 ~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~ 221 (446)
.. .++. .++.||+|||||| +.|+.|++||.+.+ .+++.++.... ..+++|+|||+|.+|+|+|..|++.+.
T Consensus 141 ~~--~~g~-~~~~~d~lviATG--s~p~~p~i~G~~~~---~~~~~~~~~~~-~~~~~vvViGgG~~g~E~A~~l~~~g~ 211 (483)
T 3dgh_A 141 KL--KSGE-RTITAQTFVIAVG--GRPRYPDIPGAVEY---GITSDDLFSLD-REPGKTLVVGAGYIGLECAGFLKGLGY 211 (483)
T ss_dssp EC--TTCC-EEEEEEEEEECCC--EEECCCSSTTHHHH---CBCHHHHTTCS-SCCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred Ee--CCCe-EEEEcCEEEEeCC--CCcCCCCCCCcccc---cCcHHHHhhhh-hcCCcEEEECCCHHHHHHHHHHHHcCC
Confidence 33 2222 5799999999999 89999999997542 34444444332 246899999999999999999999999
Q ss_pred EEEEEEecCC----cc----cc-ccCCCC-CCeeeccceeEEccC--Cc--EEecCCc-----EEeecEEEEecCccCCC
Q 013303 222 EVHIASRSVA----DE----TH-EKQPGY-DNMWLHSMVERANED--GT--VVFRNGR-----VVSADVIMHCTGYKYNY 282 (446)
Q Consensus 222 ~V~l~~r~~~----~~----~~-~~~~~~-~~v~~~~~v~~i~~~--~~--v~~~dG~-----~~~~D~vi~atG~~~~~ 282 (446)
+|+++.+... +. .+ +.+.+. -++.....|.++..+ +. |.+.++. ++++|.||+|+|++|+.
T Consensus 212 ~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~ 291 (483)
T 3dgh_A 212 EPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLV 291 (483)
T ss_dssp EEEEEESSCSSTTSCHHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECC
T ss_pred EEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCc
Confidence 9999988532 11 11 111222 256677788888642 22 6777764 68899999999999998
Q ss_pred CCC--CCC------CeeeeCCCCcccccccccCCCCCCCeEEecCCCc--cCchhHHHHHHHHHHHHHcCCC
Q 013303 283 PFL--ETN------GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK--VIPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 283 ~~l--~~~------g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~--~~~~~~~~~qa~~~a~~l~g~~ 344 (446)
+++ ... |.|.+|++.+ ++.|+||++|++.. ....+.+..||+.+|+++.|..
T Consensus 292 ~~l~l~~~gl~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~ 353 (483)
T 3dgh_A 292 DDLNLPNAGVTVQKDKIPVDSQEA----------TNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGS 353 (483)
T ss_dssp GGGTGGGTTCCCBTTBBCCCTTCB----------CSSTTEEECSTTBTTSCCCHHHHHHHHHHHHHHHHSCC
T ss_pred CcCCchhcCccccCCEEEECcCCc----------cCCCCEEEEEcccCCCCccHHHHHHHHHHHHHHHcCCC
Confidence 876 222 4566665544 55899999999852 4456788999999999998763
No 51
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=99.97 E-value=7.5e-32 Score=272.68 Aligned_cols=296 Identities=17% Similarity=0.164 Sum_probs=195.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~ 80 (446)
.+||+|||||++|+++|..|++.|++|+|||+++.+||+|... ||.|++.++... .|+.+........+.+
T Consensus 5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~--------g~~psk~l~~~~~~~~~~~~~~~~~gi~~ 76 (478)
T 1v59_A 5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNV--------GCIPSKALLNNSHLFHQMHTEAQKRGIDV 76 (478)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHHHTSGGGTEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCcccee--------ccHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 3699999999999999999999999999999989999999764 555544332211 1222111111000000
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVL-----------RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~-----------~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~ 149 (446)
+ . ....+..++. ..+...+++.+++ +++++.+.. +. +.++|.+.++.
T Consensus 77 --~--~----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~~---~~-~~v~V~~~~G~-- 134 (478)
T 1v59_A 77 --N--G----------DIKINVANFQKAKDDAVKQLTGGIELLFKKNKVT--YYKGNGSFE---DE-TKIRVTPVDGL-- 134 (478)
T ss_dssp --C--S----------CEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESEEEES---SS-SEEEEECCTTC--
T ss_pred --C--C----------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEEc---cC-CeEEEEecCCC--
Confidence 0 0 0001122222 2344556667776 777776642 22 45666554331
Q ss_pred eEE------EEEcEEEEccCCCCCCccCCCCCCCCCCc-cEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCE
Q 013303 150 VEE------ETFDAVVVCNGHFSVPRLAQVPGIDSWPG-KQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE 222 (446)
Q Consensus 150 ~~~------~~~d~VVvAtG~~s~p~~p~i~G~~~~~g-~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~ 222 (446)
..+ +.||+||+||| +.|. .+||.+ +.+ .+.++.+...... .+++|+|||+|.+|+|+|..|++.|.+
T Consensus 135 ~~~~~~~~~i~~d~lViAtG--s~p~--~~~g~~-~~~~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~ 208 (478)
T 1v59_A 135 EGTVKEDHILDVKNIIVATG--SEVT--PFPGIE-IDEEKIVSSTGALSLKE-IPKRLTIIGGGIIGLEMGSVYSRLGSK 208 (478)
T ss_dssp TTCCSSCEEEEEEEEEECCC--EEEC--CCTTCC-CCSSSEECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred cccccccceEEeCEEEECcC--CCCC--CCCCCC-CCCceEEcHHHHHhhhc-cCceEEEECCCHHHHHHHHHHHHcCCE
Confidence 124 89999999999 5553 456654 333 4666666554433 479999999999999999999999999
Q ss_pred EEEEEecCCc---------ccc-ccCCCC-CCeeeccceeEEcc--CCc---EEec-----CCcEEeecEEEEecCccCC
Q 013303 223 VHIASRSVAD---------ETH-EKQPGY-DNMWLHSMVERANE--DGT---VVFR-----NGRVVSADVIMHCTGYKYN 281 (446)
Q Consensus 223 V~l~~r~~~~---------~~~-~~~~~~-~~v~~~~~v~~i~~--~~~---v~~~-----dG~~~~~D~vi~atG~~~~ 281 (446)
|+++.+.+.. ..+ +.+.+. -++.....|.++.. ++. +.+. +|+++++|.||+|+|++|+
T Consensus 209 Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~ 288 (478)
T 1v59_A 209 VTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPY 288 (478)
T ss_dssp EEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEEC
T ss_pred EEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcC
Confidence 9999987641 011 111122 25566678888875 432 5565 4567999999999999999
Q ss_pred CC--CCCC-------CCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303 282 YP--FLET-------NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 282 ~~--~l~~-------~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~ 343 (446)
.+ ++.. .|.|.+|+.++ ++.|+||++|++... ...+.+..||+.+|+++.|.
T Consensus 289 ~~~l~l~~~g~~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 350 (478)
T 1v59_A 289 IAGLGAEKIGLEVDKRGRLVIDDQFN----------SKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTG 350 (478)
T ss_dssp CTTSCTTTTTCCBCTTSCBCCCTTSB----------CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCchhcCceeCCCCCEeECcCCc----------cCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 88 5543 34455555443 458999999998753 34578899999999999874
No 52
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=99.97 E-value=1.3e-31 Score=269.72 Aligned_cols=293 Identities=19% Similarity=0.214 Sum_probs=196.1
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCcccC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~~ 81 (446)
+||+|||||+||+++|..|++.|++|+|||+++ +||+|.+. ||.|++.++.+. .++.++. .. .+++.
T Consensus 7 ~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~--------g~iP~k~l~~~~~~~~~~~~-~~--~~g~~ 74 (464)
T 2eq6_A 7 YDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNV--------GCIPTKALLHAAETLHHLKV-AE--GFGLK 74 (464)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHT--------SHHHHHHHHHHHHHHHHHHH-HG--GGTEE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCc--------ChHHHHHHHHHHHHHHHHHh-HH--hcCCC
Confidence 799999999999999999999999999999976 99999864 565554333221 1111110 00 00110
Q ss_pred CCCCCcCCCCCCCCCCC-CCCHHHHHHH----HHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEc
Q 013303 82 AYPFVARNYEGSVDLRR-YPGHEEVLRY----LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~-~~~~~~v~~y----l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d 156 (446)
..+.. +... +....++.++ +..+.++.+++ +..++.+. ++ . ++|++. + .++.||
T Consensus 75 ~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~-~~--~---~~v~v~-g----~~~~~d 133 (464)
T 2eq6_A 75 AKPEL--------DLKKLGGWRDQVVKKLTGGVGTLLKGNGVE--LLRGFARL-VG--P---KEVEVG-G----ERYGAK 133 (464)
T ss_dssp CCCEE--------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESCEEE-EE--T---TEEEET-T----EEEEEE
T ss_pred CCCCc--------CHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEeeeEEE-cc--C---CEEEEc-c----EEEEeC
Confidence 00000 0000 0011222222 34455666776 66665443 32 2 455553 2 378999
Q ss_pred EEEEccCCCCCCccCC-CCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----
Q 013303 157 AVVVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---- 231 (446)
Q Consensus 157 ~VVvAtG~~s~p~~p~-i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~---- 231 (446)
+||+||| +.|+.|+ ++| + +.++++.++.....+.+++|+|||+|.+|+|+|..|++.|.+|+++.+.+.
T Consensus 134 ~lViATG--s~p~~p~gi~~-~---~~v~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~ 207 (464)
T 2eq6_A 134 SLILATG--SEPLELKGFPF-G---EDVWDSTRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ 207 (464)
T ss_dssp EEEECCC--EEECCBTTBCC-S---SSEECHHHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT
T ss_pred EEEEcCC--CCCCCCCCCCC-C---CcEEcHHHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc
Confidence 9999999 7888886 666 2 246676666555444579999999999999999999999999999998764
Q ss_pred -cc----cc-ccCCCC-CCeeeccceeEEccCCc---EEec-C--Cc--EEeecEEEEecCccCCCCCC---------CC
Q 013303 232 -DE----TH-EKQPGY-DNMWLHSMVERANEDGT---VVFR-N--GR--VVSADVIMHCTGYKYNYPFL---------ET 287 (446)
Q Consensus 232 -~~----~~-~~~~~~-~~v~~~~~v~~i~~~~~---v~~~-d--G~--~~~~D~vi~atG~~~~~~~l---------~~ 287 (446)
+. .+ +.+.+. -++.....|.++..++. +.+. + |+ ++++|.||+|+|++|+.+++ ++
T Consensus 208 ~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~ 287 (464)
T 2eq6_A 208 GDPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDE 287 (464)
T ss_dssp SCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCT
T ss_pred cCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecC
Confidence 11 11 111112 25566678888875432 5665 7 87 78999999999999999874 23
Q ss_pred CCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCCC
Q 013303 288 NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 288 ~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~~ 344 (446)
.|.|.+|+..+ ++.|+||++|++... ...+.+..||+.+|.++.|..
T Consensus 288 ~G~i~vd~~~~----------t~~~~Iya~GD~~~~~~l~~~A~~~g~~aa~~i~g~~ 335 (464)
T 2eq6_A 288 RGFIRVNARME----------TSVPGVYAIGDAARPPLLAHKAMREGLIAAENAAGKD 335 (464)
T ss_dssp TSCBCCCTTCB----------CSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred CCCEEECCCcc----------cCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcCCC
Confidence 45566666554 558999999988643 345778999999999999853
No 53
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=99.97 E-value=8.2e-32 Score=271.53 Aligned_cols=295 Identities=17% Similarity=0.211 Sum_probs=191.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
++||+|||||++|+++|..|++.|++|+|||++ .+||+|.+. ||.|++.++.+..+.......|.. .+
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~--------g~ip~k~l~~~~~~~~~~~~~~~~-~g-- 71 (467)
T 1zk7_A 4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVNV--------GCVPSKIMIRAAHIAHLRRESPFD-GG-- 71 (467)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHHH--------SHHHHHHHHHHHHHHHHHHCCTTT-TT--
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccCC--------CccchHHHHHHHHHHHHHhhhhhc-CC--
Confidence 479999999999999999999999999999997 799999874 565554333222111001111110 00
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHH-------HHHHH-----HHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEV-------LRYLQ-----NFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v-------~~yl~-----~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~ 148 (446)
++. .........+ .+++. +..++. +++ +..+ ++..++. +.++|.+. ++
T Consensus 72 -~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~g-~~~~~~~---~~~~v~~~--~g 132 (467)
T 1zk7_A 72 -IAA----------TVPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAIT--VVHG-EARFKDD---QSLTVRLN--EG 132 (467)
T ss_dssp -SCC----------CCCCCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEE--EEEE-EEEEEET---TEEEEEET--TS
T ss_pred -ccC----------CCCccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeE--EEEE-EEEEccC---CEEEEEeC--CC
Confidence 000 0000112222 23332 122222 333 3333 4555542 44555543 33
Q ss_pred ceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (446)
Q Consensus 149 ~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r 228 (446)
+..++.||+||+||| +.|+.|++||++.. .++++.+..... ..+++|+|||+|.+|+|+|..|++.+.+|+++.+
T Consensus 133 ~~~~~~~d~lviAtG--s~p~~p~i~G~~~~--~~~~~~~~~~~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~ 207 (467)
T 1zk7_A 133 GERVVMFDRCLVATG--ASPAVPPIPGLKES--PYWTSTEALASD-TIPERLAVIGSSVVALELAQAFARLGSKVTVLAR 207 (467)
T ss_dssp SEEEEECSEEEECCC--EEECCCCCTTTTTS--CCBCHHHHHHCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred ceEEEEeCEEEEeCC--CCCCCCCCCCCCcC--ceecHHHHhccc-ccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEE
Confidence 335799999999999 89999999998653 234444433322 2479999999999999999999999999999998
Q ss_pred cCCc----cc----c-ccCCCC-CCeeeccceeEEccCCc---EEecCCcEEeecEEEEecCccCCCCCC--C-------
Q 013303 229 SVAD----ET----H-EKQPGY-DNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGYKYNYPFL--E------- 286 (446)
Q Consensus 229 ~~~~----~~----~-~~~~~~-~~v~~~~~v~~i~~~~~---v~~~dG~~~~~D~vi~atG~~~~~~~l--~------- 286 (446)
.+.. .. + +.+.+. .++..+..|.++..++. |.+. +.++++|.||+|+|+.|+.+++ .
T Consensus 208 ~~~~l~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~ 286 (467)
T 1zk7_A 208 NTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVN 286 (467)
T ss_dssp SCTTTTSCHHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBC
T ss_pred CCccCCCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCC
Confidence 7641 00 1 111112 24566678888875443 4444 6689999999999999998763 2
Q ss_pred CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHHHcCC
Q 013303 287 TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 287 ~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~l~g~ 343 (446)
+.|.|.+|+..+ ++.|+||++|++.... ..+.+..||+.+|.++.+.
T Consensus 287 ~~G~i~vd~~~~----------t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 334 (467)
T 1zk7_A 287 AQGAIVIDQGMR----------TSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG 334 (467)
T ss_dssp TTSCBCCCTTCB----------CSSTTEEECSTTBSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred CCCCEEECCCcc----------cCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 234455555544 4589999999986533 4677889999999999875
No 54
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=99.97 E-value=1.2e-30 Score=261.69 Aligned_cols=273 Identities=20% Similarity=0.293 Sum_probs=189.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~ 79 (446)
++||+|||||+||+++|..|++. |.+|+|||+++.+++.....
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~----------------------------------- 47 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGI----------------------------------- 47 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-----------------------------------------
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCC-----------------------------------
Confidence 47999999999999999999998 78999999987654321100
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHHH-HHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRY-LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~y-l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V 158 (446)
|.. ........++..+ ...++++++++ ++++++|+.++. +.++|.+.++ ..++.||+|
T Consensus 48 ----p~~---------~~~~~~~~~~~~~~~~~~~~~~gi~--v~~~~~v~~i~~---~~~~v~~~~g---~~~~~~d~l 106 (449)
T 3kd9_A 48 ----PYV---------VEGLSTPDKLMYYPPEVFIKKRGID--LHLNAEVIEVDT---GYVRVRENGG---EKSYEWDYL 106 (449)
T ss_dssp -------------------------------CTHHHHTTCE--EETTCEEEEECS---SEEEEECSSS---EEEEECSEE
T ss_pred ----ccc---------cCCCCCHHHhhhcCHHHHHHhcCcE--EEecCEEEEEec---CCCEEEECCc---eEEEEcCEE
Confidence 000 0000111223333 33455778887 999999999865 3477754322 247899999
Q ss_pred EEccCCCCCCccCCCCCCCCCCccEEEeeecC-------CCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR-------IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~-------~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
|+||| +.|+.|++||.+. .+ ++...... .+..+.+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.
T Consensus 107 viAtG--~~p~~p~i~G~~~-~~-v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 182 (449)
T 3kd9_A 107 VFANG--ASPQVPAIEGVNL-KG-VFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGER 182 (449)
T ss_dssp EECCC--EEECCCSCBTTTS-TT-EECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred EECCC--CCCCCCCCCCCCC-CC-EEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCc
Confidence 99999 8999999999764 12 22221111 11234789999999999999999999999999999999764
Q ss_pred c------c----cc-ccCCCCCCeeeccceeEEccCCc--EEecCCcEEeecEEEEecCccCCCCCCC-------CCCee
Q 013303 232 D------E----TH-EKQPGYDNMWLHSMVERANEDGT--VVFRNGRVVSADVIMHCTGYKYNYPFLE-------TNGIV 291 (446)
Q Consensus 232 ~------~----~~-~~~~~~~~v~~~~~v~~i~~~~~--v~~~dG~~~~~D~vi~atG~~~~~~~l~-------~~g~i 291 (446)
. . .+ +.+.+..++.....|.++..++. ..+.||+++++|.||+|||+.|+.++++ +.|.|
T Consensus 183 ~l~~~~~~~~~~~l~~~l~~~v~i~~~~~v~~i~~~~~v~~v~~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i 262 (449)
T 3kd9_A 183 VLRRSFDKEVTDILEEKLKKHVNLRLQEITMKIEGEERVEKVVTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAI 262 (449)
T ss_dssp TTTTTSCHHHHHHHHHHHTTTSEEEESCCEEEEECSSSCCEEEETTEEEECSEEEECSCEEECCHHHHHTTCCBCTTSSB
T ss_pred cchhhcCHHHHHHHHHHHHhCcEEEeCCeEEEEeccCcEEEEEeCCCEEECCEEEEeeCCccCHHHHHhCCccCCCCCCE
Confidence 1 0 11 11222245566778888876543 4577888999999999999999987643 34556
Q ss_pred eeCCCCcccccccccCCCCCCCeEEecCCCc-----------cCchhHHHHHHHHHHHHHcCCC
Q 013303 292 TVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-----------VIPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 292 ~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-----------~~~~~~~~~qa~~~a~~l~g~~ 344 (446)
.+|+..+ ++.|+||++|++.. ....+.+..||+.+|+++.|..
T Consensus 263 ~vd~~~~----------t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~g~~ 316 (449)
T 3kd9_A 263 WTNEKMQ----------TSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKE 316 (449)
T ss_dssp CCCTTCB----------CSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred EECCCCc----------cCCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhcCCC
Confidence 6666554 55899999998852 1345788999999999999863
No 55
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=99.97 E-value=2.6e-31 Score=268.63 Aligned_cols=298 Identities=18% Similarity=0.167 Sum_probs=193.8
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC------CcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE------QVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNL 73 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~------~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~ 73 (446)
+.+||+|||||++|+++|..|++.|++|+|||+++ .+||+|.+. ||.|++.+.... .+..+....
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~--------gciPsk~l~~~~~~~~~~~~~~ 73 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNV--------GCIPSKALLDSSYKFHEAHESF 73 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHH--------SHHHHHHHHHHHHHHHHHHTTS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccc--------cHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999986 467777654 555554332211 111111000
Q ss_pred CCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEE
Q 013303 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRY-----------LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVK 142 (446)
Q Consensus 74 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~y-----------l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~ 142 (446)
..+.+.. .........+.++ +....++.+++ +..++. ..+ .. ..+.|.
T Consensus 74 -------~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~~-~~~--~~-~~~~v~ 132 (476)
T 3lad_A 74 -------KLHGIST--------GEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVT--LFEGHG-KLL--AG-KKVEVT 132 (476)
T ss_dssp -------GGGTEEC--------SCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCE--EEESEE-EEC--ST-TCEEEE
T ss_pred -------HhcCccc--------CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeEE-EEe--cC-CEEEEE
Confidence 0011100 0011122233322 23344455665 554432 222 12 445554
Q ss_pred EEeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCE
Q 013303 143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE 222 (446)
Q Consensus 143 ~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~ 222 (446)
. .++...++.||+||+||| +.|..|+.++.+. ..++++.+..... ..+++|+|||+|.+|+|+|..|++.+.+
T Consensus 133 ~--~~g~~~~~~~d~lvlAtG--~~p~~~~~~~~~~--~~v~~~~~~~~~~-~~~~~v~ViGgG~~g~e~A~~l~~~g~~ 205 (476)
T 3lad_A 133 A--ADGSSQVLDTENVILASG--SKPVEIPPAPVDQ--DVIVDSTGALDFQ-NVPGKLGVIGAGVIGLELGSVWARLGAE 205 (476)
T ss_dssp C--TTSCEEEECCSCEEECCC--EEECCCTTSCCCS--SSEEEHHHHTSCS-SCCSEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred c--CCCceEEEEcCEEEEcCC--CCCCCCCCCCCCc--ccEEechhhhccc-cCCCeEEEECCCHHHHHHHHHHHHcCCc
Confidence 3 333345789999999999 7888776555332 3466666554433 3579999999999999999999999999
Q ss_pred EEEEEecCC-----cc----cc-ccCCCCC-CeeeccceeEEccCCc---EEecCC---cEEeecEEEEecCccCCCCCC
Q 013303 223 VHIASRSVA-----DE----TH-EKQPGYD-NMWLHSMVERANEDGT---VVFRNG---RVVSADVIMHCTGYKYNYPFL 285 (446)
Q Consensus 223 V~l~~r~~~-----~~----~~-~~~~~~~-~v~~~~~v~~i~~~~~---v~~~dG---~~~~~D~vi~atG~~~~~~~l 285 (446)
|+++.+.+. +. .+ +.+.+.+ ++.....|.++..++. +.+.++ +++++|.||+|||++|+.++|
T Consensus 206 Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l 285 (476)
T 3lad_A 206 VTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDL 285 (476)
T ss_dssp EEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECCTTC
T ss_pred EEEEecCCCcCcccCHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCCCC
Confidence 999999864 11 11 1111222 5566778888875432 667765 578999999999999998864
Q ss_pred --C-------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCCC
Q 013303 286 --E-------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 286 --~-------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~~ 344 (446)
. +.|.|.+|+..+ ++.|+||++|++.. ....+.+..||+.+|+++.|+.
T Consensus 286 ~~~~~g~~~~~~G~i~vd~~~~----------t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 344 (476)
T 3lad_A 286 LAADSGVTLDERGFIYVDDYCA----------TSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHK 344 (476)
T ss_dssp CSSCCSCCBCTTSCBCCCTTSB----------CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred CccccCccccCCCCEeeCCCcc----------cCCCCEEEEEccCCCcccHHHHHHHHHHHHHHhcCCC
Confidence 2 234455555444 55899999999873 4456788999999999998764
No 56
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=99.97 E-value=1.2e-31 Score=271.61 Aligned_cols=294 Identities=18% Similarity=0.236 Sum_probs=197.3
Q ss_pred CCeEEEECcChHHHHHHHHHHH-CCCcEEEEe--------eCCCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-Cceee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLR-EGHTVVVYE--------KGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRV 71 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~-~g~~v~v~e--------~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~ 71 (446)
++||+|||||++|+++|..|++ .|++|+||| +...+||+|.+. ||.|++.+..+..+ ..++
T Consensus 3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~--------gciPsk~l~~~a~~~~~~~- 73 (490)
T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNV--------GCVPKKLMVTGANYMDTIR- 73 (490)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHH--------SHHHHHHHHHHHHHHHHHH-
T ss_pred cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCC--------CcchhhHHHHHHHHHHHHH-
Confidence 5799999999999999999999 999999999 356899999875 66666544332211 1111
Q ss_pred cCCCCCcccCCCCCCcCCCCCCCCCC-CCCCHHHHHHHH-----------HHHHHHh-CCCCcEEeCeEEEEEEEcCCCc
Q 013303 72 NLPRELMGFQAYPFVARNYEGSVDLR-RYPGHEEVLRYL-----------QNFAREF-GVDQVVRLHTEVLNARLVESNK 138 (446)
Q Consensus 72 ~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~v~~yl-----------~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~ 138 (446)
+.+ .|.+... .. ......++.++. ....++. +++ +..++ +..++.
T Consensus 74 ~~~-------~~g~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~--~~~g~-~~~i~~----- 131 (490)
T 1fec_A 74 ESA-------GFGWELD-------RESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLT--FHQGF-GALQDN----- 131 (490)
T ss_dssp HGG-------GGTEECC-------GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEE--EEESE-EEEEET-----
T ss_pred HHH-------hcCcccC-------CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE--EEEeE-EEEeeC-----
Confidence 110 0111000 00 001223333332 3333444 555 55553 555542
Q ss_pred eEEEEEe---CCCc-eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHH
Q 013303 139 WKVKSRK---KDDV-VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKR 214 (446)
Q Consensus 139 ~~v~~~~---~~~~-~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~ 214 (446)
.++.+.. .++. ..++.||+||+||| +.|..|++||.+. ++++.++.... ..+++|+|||+|.+|+|+|.
T Consensus 132 ~~v~v~~~~~~~g~~~~~~~~d~lviAtG--s~p~~p~i~g~~~----~~~~~~~~~~~-~~~~~vvViGgG~ig~E~A~ 204 (490)
T 1fec_A 132 HTVLVRESADPNSAVLETLDTEYILLATG--SWPQHLGIEGDDL----CITSNEAFYLD-EAPKRALCVGGGYISIEFAG 204 (490)
T ss_dssp TEEEEESSSSTTSCEEEEEEEEEEEECCC--EEECCCCSBTGGG----CBCHHHHTTCS-SCCSEEEEECSSHHHHHHHH
T ss_pred CEEEEEeeccCCCCceEEEEcCEEEEeCC--CCCCCCCCCCccc----eecHHHHhhhh-hcCCeEEEECCCHHHHHHHH
Confidence 3455542 1221 24799999999999 8899999998742 33444443332 24689999999999999999
Q ss_pred HHhcc---CCEEEEEEecCC-----ccc----c-ccCCCCC-CeeeccceeEEccCC----cEEecCCcEEeecEEEEec
Q 013303 215 DLAGF---AKEVHIASRSVA-----DET----H-EKQPGYD-NMWLHSMVERANEDG----TVVFRNGRVVSADVIMHCT 276 (446)
Q Consensus 215 ~l~~~---~~~V~l~~r~~~-----~~~----~-~~~~~~~-~v~~~~~v~~i~~~~----~v~~~dG~~~~~D~vi~at 276 (446)
.|++. |.+|+++++.+. +.. + +.+.+.+ ++..+..|.++..++ .|.+.||+++++|.||+|+
T Consensus 205 ~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~ 284 (490)
T 1fec_A 205 IFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAI 284 (490)
T ss_dssp HHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred HHHhhccCcCeEEEEEcCCCcccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEcc
Confidence 99999 999999999864 111 1 1111222 566677888887542 3778899999999999999
Q ss_pred CccCCCCCC--C-------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303 277 GYKYNYPFL--E-------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 277 G~~~~~~~l--~-------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~ 343 (446)
|++|+.++| . +.|.|.+|+.++ ++.|+||++|++.. ....+.+..||+.+|.++.|.
T Consensus 285 G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~~~----------t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 351 (490)
T 1fec_A 285 GRVPRSQTLQLEKAGVEVAKNGAIKVDAYSK----------TNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFAN 351 (490)
T ss_dssp CEEESCTTSCGGGGTCCBCTTSCBCCCTTCB----------CSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSS
T ss_pred CCCcCccccCchhcCccCCCCCCEEECCCCc----------cCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCC
Confidence 999999854 2 234566665544 45899999999875 345678899999999999874
No 57
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=99.97 E-value=9.8e-32 Score=270.06 Aligned_cols=291 Identities=16% Similarity=0.136 Sum_probs=195.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~ 80 (446)
.+||+|||||+||+++|..|++.|++|+|||+++.+||+|.+. ||.|++.++... .+..+.. +...+.+
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~--------g~~p~k~l~~~~~~~~~~~~--~~~g~~~ 70 (455)
T 2yqu_A 1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRV--------GCIPSKALLETTERIYEAKK--GLLGAKV 70 (455)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHHH--CCTTEEE
T ss_pred CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCcccee--------cchhHHHHHHHHHHHHHHhh--hcCCccc
Confidence 3699999999999999999999999999999998999999864 555554333211 1111111 1000000
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVL-----------RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~-----------~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~ 149 (446)
.+. ..+..++. ..+..++++.+++ +..++.+. + +. ..++|.+ ++
T Consensus 71 ~~~---------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~--~~~g~~~~-i--~~-~~~~v~~-~g--- 125 (455)
T 2yqu_A 71 KGV---------------ELDLPALMAHKDKVVQANTQGVEFLFKKNGIA--RHQGTARF-L--SE-RKVLVEE-TG--- 125 (455)
T ss_dssp CCE---------------EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCE--EEESCEEE-S--SS-SEEEETT-TC---
T ss_pred CCC---------------ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeEEEE-e--cC-CeEEEee-CC---
Confidence 000 01112222 2234556667776 66665432 2 11 3344433 22
Q ss_pred eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
.++.||+||+||| +.|..|+++|.+. ..++++.++..... .+++|+|||+|.+|+|+|..|++.+.+|+++.+.
T Consensus 126 -~~~~~d~lviAtG--~~p~~~~~~g~~~--~~v~~~~~~~~~~~-~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~ 199 (455)
T 2yqu_A 126 -EELEARYILIATG--SAPLIPPWAQVDY--ERVVTSTEALSFPE-VPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYM 199 (455)
T ss_dssp -CEEEEEEEEECCC--EEECCCTTBCCCS--SSEECHHHHTCCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred -EEEEecEEEECCC--CCCCCCCCCCCCc--CcEechHHhhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 3789999999999 7899998888653 13666665544332 4699999999999999999999999999999987
Q ss_pred CCc-----cc----c-ccCCCC-CCeeeccceeEEccCC-c--EEecCCcEEeecEEEEecCccCCCCCC--CC------
Q 013303 230 VAD-----ET----H-EKQPGY-DNMWLHSMVERANEDG-T--VVFRNGRVVSADVIMHCTGYKYNYPFL--ET------ 287 (446)
Q Consensus 230 ~~~-----~~----~-~~~~~~-~~v~~~~~v~~i~~~~-~--v~~~dG~~~~~D~vi~atG~~~~~~~l--~~------ 287 (446)
+.. .. + +.+.+. .++..+..|.++..++ . +.++||+++++|.||+|||++|+.+++ +.
T Consensus 200 ~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~ 279 (455)
T 2yqu_A 200 DRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTD 279 (455)
T ss_dssp SSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCC
T ss_pred CccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccC
Confidence 641 00 1 111111 2556677888887543 2 456689999999999999999998874 22
Q ss_pred -CCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303 288 -NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 288 -~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~ 343 (446)
.|.+.+|+..+ ++.|+||++|++... ...+.+..||+.+|.++.|.
T Consensus 280 ~~g~i~vd~~~~----------t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 327 (455)
T 2yqu_A 280 ERGRIPVDEHLR----------TRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHMVRG 327 (455)
T ss_dssp TTSCCCCCTTSB----------CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred CCCcEeECCCcc----------cCCCCEEEEecCCCCccCHHHHHHhHHHHHHHHcCC
Confidence 23344444333 448999999988643 34567899999999999875
No 58
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=99.97 E-value=9.4e-33 Score=270.68 Aligned_cols=260 Identities=12% Similarity=0.140 Sum_probs=180.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
+.+|+|||||+||++||..|...+.+|+|||+++.++.. .. .. ++.+.+
T Consensus 9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~-~~---------------------~l-------~~~l~g-- 57 (385)
T 3klj_A 9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYY-RP---------------------RL-------NEIIAK-- 57 (385)
T ss_dssp BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBC-GG---------------------GH-------HHHHHS--
T ss_pred CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcc-cC---------------------hh-------hHHHcC--
Confidence 568999999999999999997778999999998765310 00 00 000000
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
..+.+++..+..++.++++++ ++++++|++|++.. .+|++.++. ++.||+||+|
T Consensus 58 -----------------~~~~~~l~~~~~~~~~~~~i~--~~~~~~V~~id~~~---~~v~~~~g~----~~~yd~lvlA 111 (385)
T 3klj_A 58 -----------------NKSIDDILIKKNDWYEKNNIK--VITSEFATSIDPNN---KLVTLKSGE----KIKYEKLIIA 111 (385)
T ss_dssp -----------------CCCGGGTBSSCHHHHHHTTCE--EECSCCEEEEETTT---TEEEETTSC----EEECSEEEEC
T ss_pred -----------------CCCHHHccCCCHHHHHHCCCE--EEeCCEEEEEECCC---CEEEECCCC----EEECCEEEEe
Confidence 000112222334555677887 89999999998754 567776554 7899999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCC-----CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc--c-
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPF-----QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD--E- 233 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~-----~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~--~- 233 (446)
|| +.|+.|++||.+ .+++...+.+...+ .+++|+|||+|.+|+|+|..|++.|.+|+++.+.+.. .
T Consensus 112 tG--~~p~~p~i~G~~----~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~ 185 (385)
T 3klj_A 112 SG--SIANKIKVPHAD----EIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQ 185 (385)
T ss_dssp CC--EEECCCCCTTCS----CEECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTT
T ss_pred cC--CCcCCCCCCCCC----CeEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhh
Confidence 99 899999999986 23343322222212 2789999999999999999999999999999987641 0
Q ss_pred -------cccc-CCCCC-CeeeccceeEEccCCcEEecCCcEEeecEEEEecCccCCCCCCCCCC-----eeeeCCCCcc
Q 013303 234 -------THEK-QPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNG-----IVTVDDNRVG 299 (446)
Q Consensus 234 -------~~~~-~~~~~-~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~g-----~i~~~~~~~~ 299 (446)
.+.+ +.+.+ ++.....|.++ |+++++|.||+|||++|+.+++...| .+.+|+.++
T Consensus 186 ~~~~~~~~~~~~l~~~gV~~~~~~~v~~i----------g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~~gi~vd~~~~- 254 (385)
T 3klj_A 186 LDRDGGLFLKDKLDRLGIKIYTNSNFEEM----------GDLIRSSCVITAVGVKPNLDFIKDTEIASKRGILVNDHME- 254 (385)
T ss_dssp SCHHHHHHHHHHHHTTTCEEECSCCGGGC----------HHHHHHSEEEECCCEEECCGGGTTSCCCBSSSEEECTTCB-
T ss_pred cCHHHHHHHHHHHHhCCCEEEeCCEEEEc----------CeEEecCeEEECcCcccChhhhhhcCCCcCCCEEECCCcc-
Confidence 0000 01111 22222222222 66789999999999999998875432 255665554
Q ss_pred cccccccCCCCCCCeEEecCCCc-----cCchhHHHHHHHHHHHHHcCCC
Q 013303 300 PLYKHVFPPVLAPGLSFVGIPQK-----VIPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 300 ~l~~~~~~~~~~p~l~~iG~~~~-----~~~~~~~~~qa~~~a~~l~g~~ 344 (446)
++.|+||++|++.. ......+..||+.+|+++.|+.
T Consensus 255 ---------t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~~ 295 (385)
T 3klj_A 255 ---------TSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACGED 295 (385)
T ss_dssp ---------CSSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred ---------cCCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHhcCCC
Confidence 45899999998864 3345778999999999999863
No 59
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=99.97 E-value=1.2e-31 Score=269.98 Aligned_cols=289 Identities=16% Similarity=0.171 Sum_probs=195.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.+||+|||||++|+++|..|++.|++|+|||+ +.+||+|.+. ||.|++.++.+........+ +.
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~--------gcip~k~l~~~~~~~~~~~~-------~~ 68 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVIR--------GCVPKKLYVYASQFAEHFED-------AA 68 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHHH--------SHHHHHHHHHHHHHHHHHHH-------GG
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCccccc--------CchhhHHHHHHHHHHHHHHH-------HH
Confidence 36999999999999999999999999999999 7899999864 56555433222111110001 11
Q ss_pred CCCCCcCCCCCCCCCCCCCCHH-----------HHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCce
Q 013303 82 AYPFVARNYEGSVDLRRYPGHE-----------EVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~-----------~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~ 150 (446)
.|.+... . ...+.. .+..++..+.++.+++ +..+ ++..+ +.+++.+.. + .
T Consensus 69 ~~g~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~i-----~~~~v~~~~-~--~ 129 (463)
T 4dna_A 69 GFGWTVG-------E-SRFDWAKLVAAKEQEIARLEGLYRKGLANAGAE--ILDT-RAELA-----GPNTVKLLA-S--G 129 (463)
T ss_dssp GGTEEEC-------C-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCE--EEES-CEEES-----SSSEEEETT-T--T
T ss_pred hcCcccC-------C-CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEe-----eCCEEEEec-C--C
Confidence 1111100 0 001122 2333445555556765 4444 44433 234555521 1 1
Q ss_pred EEEEEcEEEEccCCCCCCc-cCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 151 EEETFDAVVVCNGHFSVPR-LAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 151 ~~~~~d~VVvAtG~~s~p~-~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
.++.||+||+||| +.|. .|.+||.+. ..++.++.... ..+++|+|||+|.+|+|+|..+++.+.+|+++.+.
T Consensus 130 ~~~~~d~lviAtG--~~p~~~p~i~G~~~----~~~~~~~~~~~-~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~ 202 (463)
T 4dna_A 130 KTVTAERIVIAVG--GHPSPHDALPGHEL----CITSNEAFDLP-ALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRG 202 (463)
T ss_dssp EEEEEEEEEECCC--EEECCCTTSTTGGG----CBCHHHHTTCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred eEEEeCEEEEecC--CCcccCCCCCCccc----cccHHHHhhhh-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcC
Confidence 4789999999999 8899 999999763 33444443332 24799999999999999999999999999999987
Q ss_pred CC-----cc----cc-ccCCCC-CCeeeccceeEEccC--C--cEE-ecCCcEEeecEEEEecCccCCCCCCC-------
Q 013303 230 VA-----DE----TH-EKQPGY-DNMWLHSMVERANED--G--TVV-FRNGRVVSADVIMHCTGYKYNYPFLE------- 286 (446)
Q Consensus 230 ~~-----~~----~~-~~~~~~-~~v~~~~~v~~i~~~--~--~v~-~~dG~~~~~D~vi~atG~~~~~~~l~------- 286 (446)
+. +. .+ +.+.+. .++..+..|.++..+ + .|. +.||+ +++|.||+|+|+.|+.++|.
T Consensus 203 ~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~ 281 (463)
T 4dna_A 203 KEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVR 281 (463)
T ss_dssp SSSSTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCC
T ss_pred CccccccCHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCce
Confidence 64 11 11 111122 256667788888754 2 367 78888 99999999999999998742
Q ss_pred --CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303 287 --TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 287 --~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~ 343 (446)
+.|.|.+|++.+ ++.|+||++|++.. ....+.+..||+++|+++.|.
T Consensus 282 ~~~~G~i~vd~~~~----------t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 331 (463)
T 4dna_A 282 TNELGAIIVDAFSR----------TSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKN 331 (463)
T ss_dssp BCTTSCBCCCTTCB----------CSSTTEEECSGGGSSCCCHHHHHHHHHHHHHHHHSS
T ss_pred ECCCCCEeECcCCC----------CCCCCEEEEEecCCCCCChHHHHHHHHHHHHHHcCC
Confidence 334455555544 55899999999875 344578899999999999875
No 60
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=99.97 E-value=2.2e-31 Score=269.19 Aligned_cols=290 Identities=16% Similarity=0.189 Sum_probs=193.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
++||+|||||++|+++|..|++.|++|+|||++ .+||+|.+. ||.|++.++.+........ .+.
T Consensus 20 ~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~~--------gc~p~k~l~~~~~~~~~~~-------~~~ 83 (478)
T 3dk9_A 20 SYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVNV--------GCVPKKVMWNTAVHSEFMH-------DHA 83 (478)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHH--------SHHHHHHHHHHHHHHHHHT-------TTT
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCccccc--------CccchHHHHHHHHHHHHHH-------HHH
Confidence 379999999999999999999999999999975 799999775 5665543332221111100 111
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHH-----------HHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCce
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNF-----------AREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~-----------~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~ 150 (446)
.|.+... ....+..++.++...+ .+..++. +..+ ++..+.. ..++|.. ++
T Consensus 84 ~~g~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~~~~---~~~~v~~-~g---- 144 (478)
T 3dk9_A 84 DYGFPSC--------EGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIE--IIRG-HAAFTSD---PKPTIEV-SG---- 144 (478)
T ss_dssp TTTSCCC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEES-CEEECSC---SSCEEEE-TT----
T ss_pred hcCccCC--------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEEe-EEEEeeC---CeEEEEE-CC----
Confidence 1222111 1223444545444433 3334554 3333 2333221 3466662 22
Q ss_pred EEEEEcEEEEccCCCCCCccC---CCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEE
Q 013303 151 EEETFDAVVVCNGHFSVPRLA---QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS 227 (446)
Q Consensus 151 ~~~~~d~VVvAtG~~s~p~~p---~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~ 227 (446)
.++.||+||+||| +.|..| ++||.+. ..++..+..... .+++|+|||+|.+|+|+|..|++.|.+|+++.
T Consensus 145 ~~~~~d~lviAtG--~~p~~p~~~~i~G~~~----~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~ 217 (478)
T 3dk9_A 145 KKYTAPHILIATG--GMPSTPHESQIPGASL----GITSDGFFQLEE-LPGRSVIVGAGYIAVEMAGILSALGSKTSLMI 217 (478)
T ss_dssp EEEECSCEEECCC--EEECCCCTTTSTTGGG----SBCHHHHTTCCS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred EEEEeeEEEEccC--CCCCCCCcCCCCCCce----eEchHHhhchhh-cCccEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence 3699999999999 899999 8999762 344444444332 46899999999999999999999999999999
Q ss_pred ecCC-----cc----cc-ccCCCC-CCeeeccceeEEccC--C---cEEecC---C----cEEeecEEEEecCccCCCCC
Q 013303 228 RSVA-----DE----TH-EKQPGY-DNMWLHSMVERANED--G---TVVFRN---G----RVVSADVIMHCTGYKYNYPF 284 (446)
Q Consensus 228 r~~~-----~~----~~-~~~~~~-~~v~~~~~v~~i~~~--~---~v~~~d---G----~~~~~D~vi~atG~~~~~~~ 284 (446)
+.+. +. .+ +.+.+. -++.....|.++..+ + .+.+.| | +++++|.||+|+|++|+.++
T Consensus 218 ~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~ 297 (478)
T 3dk9_A 218 RHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 297 (478)
T ss_dssp SSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTT
T ss_pred eCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCC
Confidence 8764 11 11 111122 245556678888643 3 255665 2 56899999999999999986
Q ss_pred C---------CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCC-ccCchhHHHHHHHHHHHHHcCC
Q 013303 285 L---------ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQ-KVIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 285 l---------~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~-~~~~~~~~~~qa~~~a~~l~g~ 343 (446)
| ++.|.|.+|++.+ ++.|+||++|++. .....+.+..||+.+|+++.|.
T Consensus 298 l~l~~~g~~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 356 (478)
T 3dk9_A 298 LSLNKLGIQTDDKGHIIVDEFQN----------TNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEY 356 (478)
T ss_dssp SCGGGGTCCBCTTCCBCCCTTCB----------CSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHHSC
T ss_pred CCchhcCCeeCCCCCEeeCCCcc----------cCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHcCC
Confidence 4 2345566666554 5589999999987 3445678899999999999876
No 61
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=99.97 E-value=5.7e-32 Score=274.00 Aligned_cols=291 Identities=16% Similarity=0.122 Sum_probs=194.5
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
+||+||||||||++||..|++.|++|+|||++ .+||+|.+. ||.|++.++.+..+.....+ ++.
T Consensus 9 ~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~-~~GGtc~~~--------gciPsk~l~~~a~~~~~~~~-------~~~ 72 (492)
T 3ic9_A 9 VDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGG-AYGTTCARV--------GCMPSKLLIAAADASYHASQ-------TDL 72 (492)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTCSCEEEEESS-CSSCHHHHH--------SHHHHHHHHHHHHHHHHHTC-------GGG
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC-CCCCccccc--------ChhcCHHHHHHHHHHHHHhh-------hhh
Confidence 69999999999999999999999999999996 599999875 77776655443321111111 111
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCC---------C-cEEeCeEEEEEEEcCCCceEEEEEeCCCceEE
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVD---------Q-VVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~---------~-~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~ 152 (446)
|.++. .....+..++.+++.++.+++... . .+. ..+..-+ +.++|.+.++ .+
T Consensus 73 ~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~g~a~~~-----~~~~v~~~~~----~~ 134 (492)
T 3ic9_A 73 FGIQV--------DRISVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKI-RGFAKFL-----DEHTLQVDDH----SQ 134 (492)
T ss_dssp GTEEC--------SEEEECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEE-ESCEEEE-----ETTEEEETTT----EE
T ss_pred cCcCC--------CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEE-EEEEEEe-----cCCEEEEcCC----cE
Confidence 11110 011134566666666555543211 0 011 1111111 3366666433 37
Q ss_pred EEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-
Q 013303 153 ETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA- 231 (446)
Q Consensus 153 ~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~- 231 (446)
+.||+|||||| +.|..|+++|.. ...++++.++.... ..+++|+|||+|.+|+|+|..|++.|.+|+++.+.+.
T Consensus 135 ~~~d~lViATG--s~p~~p~~~~~~--~~~v~t~~~~~~~~-~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~ 209 (492)
T 3ic9_A 135 VIAKRIVIATG--SRPNYPEFLAAA--GSRLLTNDNLFELN-DLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSV 209 (492)
T ss_dssp EEEEEEEECCC--EECCCCHHHHTT--GGGEECHHHHTTCS-SCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCC
T ss_pred EEeCEEEEccC--CCCcCCCCCCcc--CCcEEcHHHHhhhh-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcc
Confidence 99999999999 899988876543 23455555544433 3479999999999999999999999999999999875
Q ss_pred ----cc----cc-ccCCCCCCeeeccceeEEccCC-c--EEec--CC--cEEeecEEEEecCccCCCCCCC---------
Q 013303 232 ----DE----TH-EKQPGYDNMWLHSMVERANEDG-T--VVFR--NG--RVVSADVIMHCTGYKYNYPFLE--------- 286 (446)
Q Consensus 232 ----~~----~~-~~~~~~~~v~~~~~v~~i~~~~-~--v~~~--dG--~~~~~D~vi~atG~~~~~~~l~--------- 286 (446)
+. .+ +.+.+.-++.....|+++..++ . +.+. || +++++|.||+|||++|+.++|+
T Consensus 210 l~~~d~~~~~~l~~~l~~~V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~ 289 (492)
T 3ic9_A 210 ANLQDEEMKRYAEKTFNEEFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELD 289 (492)
T ss_dssp TTCCCHHHHHHHHHHHHTTSEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBC
T ss_pred cccCCHHHHHHHHHHHhhCcEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEEC
Confidence 11 11 1111224556677888886543 2 4554 78 6789999999999999999842
Q ss_pred CCCeeeeC-CCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHHHcC
Q 013303 287 TNGIVTVD-DNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASVLSG 342 (446)
Q Consensus 287 ~~g~i~~~-~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~l~g 342 (446)
+.|.+.+| +..+ ++.|+||++|++.... ..+.+..||+.+|.++.+
T Consensus 290 ~~G~i~vd~~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~ 337 (492)
T 3ic9_A 290 KKNSPLFDELTLQ----------TSVDHIFVAGDANNTLTLLHEAADDGKVAGTNAGA 337 (492)
T ss_dssp TTCCBCCCTTTCB----------CSSTTEEECGGGGTSSCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEeECccccc----------CCCCCEEEEEecCCCCccHHHHHHHHHHHHHHHcC
Confidence 23445555 3333 4589999999987543 446889999999999986
No 62
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=99.97 E-value=8.8e-32 Score=273.20 Aligned_cols=298 Identities=14% Similarity=0.115 Sum_probs=194.2
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeC--------CCcCceeeeCCCCCCCCCCCCCCCCCccCCc-cCceeecC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG--------EQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNL 73 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~--------~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~-y~~l~~~~ 73 (446)
+||+||||||+|+.||..+++.|.+|+|+|+. ..+||+|.+. ||+|+|.++++.. ++.++.+.
T Consensus 43 YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~--------GCIPsK~L~~aa~~~~~~~~~~ 114 (542)
T 4b1b_A 43 YDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNV--------GCVPKKLMHYAGHMGSIFKLDS 114 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHH--------SHHHHHHHHHHHHHHHHHHHTG
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCccccc--------chHHHHHHHHHHHHHHHHHhhh
Confidence 69999999999999999999999999999964 3589999886 9999987765442 22211111
Q ss_pred CCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHH-----------HHhCCCCcEEeCeEEEEEEEcCCCceEEE
Q 013303 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFA-----------REFGVDQVVRLHTEVLNARLVESNKWKVK 142 (446)
Q Consensus 74 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~-----------~~~~l~~~i~~~~~V~~v~~~~~~~~~v~ 142 (446)
......+... -....++.++.+... ++.+++ + +.....-+.+ ....|.
T Consensus 115 ~~~Gi~~~~~---------------~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~--~-i~G~a~f~~~---~~v~V~ 173 (542)
T 4b1b_A 115 KAYGWKFDNL---------------KHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVK--Y-INGLAKLKDK---NTVSYY 173 (542)
T ss_dssp GGGTEEEEEE---------------EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--E-ECEEEEEEET---TEEEEE
T ss_pred HhcCcccCcc---------------cccHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--E-EeeeEEEcCC---CcceEe
Confidence 1100011000 012234444433332 333443 2 2222222221 223333
Q ss_pred EEeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCE
Q 013303 143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE 222 (446)
Q Consensus 143 ~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~ 222 (446)
.....+..+++++|++||||| ++|.+|+.++.+. ..++.|.+....+. .+++++|||+|++|+|+|..+++.|.+
T Consensus 174 ~~~~~~~~~~i~a~~iiIATG--s~P~~P~~~~~~~--~~~~ts~~~l~l~~-lP~~lvIIGgG~IGlE~A~~~~~lG~~ 248 (542)
T 4b1b_A 174 LKGDLSKEETVTGKYILIATG--CRPHIPDDVEGAK--ELSITSDDIFSLKK-DPGKTLVVGASYVALECSGFLNSLGYD 248 (542)
T ss_dssp EC--CCCEEEEEEEEEEECCC--EEECCCSSSBTHH--HHCBCHHHHTTCSS-CCCSEEEECCSHHHHHHHHHHHHHTCC
T ss_pred ecccCCceEEEeeeeEEeccC--CCCCCCCcccCCC--ccccCchhhhcccc-CCceEEEECCCHHHHHHHHHHHhcCCe
Confidence 333233456899999999999 9999986544322 12345555444333 468999999999999999999999999
Q ss_pred EEEEEecCC----ccc----c-ccCCCCC-CeeeccceeEEccCCc---EEecCCcEEeecEEEEecCccCCCCCCCCC-
Q 013303 223 VHIASRSVA----DET----H-EKQPGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGYKYNYPFLETN- 288 (446)
Q Consensus 223 V~l~~r~~~----~~~----~-~~~~~~~-~v~~~~~v~~i~~~~~---v~~~dG~~~~~D~vi~atG~~~~~~~l~~~- 288 (446)
||++.|+.. ++. + +.+.+.+ .+.....++++...+. |.+.+++++++|.|++|+|++||+..|..+
T Consensus 249 VTii~~~~~L~~~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~ 328 (542)
T 4b1b_A 249 VTVAVRSIVLRGFDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLES 328 (542)
T ss_dssp EEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCGGGCGGG
T ss_pred EEEecccccccccchhHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCccccCccc
Confidence 999987543 111 1 1111222 4556667777764432 667899999999999999999999876421
Q ss_pred ---------CeeeeCCCCcccccccccCCCCCCCeEEecCCCcc--CchhHHHHHHHHHHHHHcCCC
Q 013303 289 ---------GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV--IPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 289 ---------g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~--~~~~~~~~qa~~~a~~l~g~~ 344 (446)
+.+.+|+.++ ++.|+||++|++... ...+.+..|++.++.++.|..
T Consensus 329 ~gv~~~~~~~~i~vd~~~~----------Ts~p~IyAiGDv~~~~p~La~~A~~eg~~aa~~i~g~~ 385 (542)
T 4b1b_A 329 LNMNVNKSNNKIIADHLSC----------TNIPSIFAVGDVAENVPELAPVAIKAGEILARRLFKDS 385 (542)
T ss_dssp TTCCEETTTTEECCCTTSB----------CSSTTEEECTTSBTTCCCCHHHHHHHHHHHHHHHHSCC
T ss_pred ceeeecccCceEecccccc----------ccCCCeEEeccccCCchhHHHHHHHHHHHHHHHHhcCC
Confidence 2234444444 669999999998743 356788999999999998753
No 63
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=99.97 E-value=1.8e-31 Score=271.94 Aligned_cols=296 Identities=18% Similarity=0.205 Sum_probs=191.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC--------CcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--------QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL 73 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~--------~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~ 73 (446)
.+||+||||||||++||..|++.|++|+|||+.+ .+||+|.+. ||.|++.+..+..+.....
T Consensus 32 ~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~--------GciPsk~l~~~~~~~~~~~-- 101 (519)
T 3qfa_A 32 DYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNV--------GCIPKKLMHQAALLGQALQ-- 101 (519)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHH--------SHHHHHHHHHHHHHHHHHH--
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCc--------CccchHHHHHHHHHHHHHH--
Confidence 3699999999999999999999999999999854 789999875 6777654333221111100
Q ss_pred CCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHH-----------HhCCCCcEEeCeEEEEEEEcCCCceEEE
Q 013303 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR-----------EFGVDQVVRLHTEVLNARLVESNKWKVK 142 (446)
Q Consensus 74 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~-----------~~~l~~~i~~~~~V~~v~~~~~~~~~v~ 142 (446)
.+..|.+... .........+.++...+.+ ..++. +. ..++..++. +.+.
T Consensus 102 -----~~~~~g~~~~-------~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~--~i-~g~a~~~d~-----~~v~ 161 (519)
T 3qfa_A 102 -----DSRNYGWKVE-------ETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVV--YE-NAYGQFIGP-----HRIK 161 (519)
T ss_dssp -----HHHHTTBCCC-------SSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EE-CSEEEEEET-----TEEE
T ss_pred -----HHHhcCcccC-------CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EE-EEEEEEeeC-----CEEE
Confidence 0111222111 1123345566666554443 23443 32 334444432 3344
Q ss_pred EEeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCE
Q 013303 143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE 222 (446)
Q Consensus 143 ~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~ 222 (446)
+...+++..++.||+|||||| +.|+.|++||.+. .++++.++.... ..+++|+|||+|.+|+|+|..|++.|.+
T Consensus 162 v~~~~g~~~~i~~d~lViATG--s~p~~p~i~G~~~---~~~t~~~~~~l~-~~~~~vvVIGgG~ig~E~A~~l~~~G~~ 235 (519)
T 3qfa_A 162 ATNNKGKEKIYSAERFLIATG--ERPRYLGIPGDKE---YCISSDDLFSLP-YCPGKTLVVGASYVALECAGFLAGIGLD 235 (519)
T ss_dssp EECTTCCCCEEEEEEEEECCC--EEECCCCCTTHHH---HCBCHHHHTTCS-SCCCSEEEECCSHHHHHHHHHHHHTTCC
T ss_pred EEcCCCCEEEEECCEEEEECC--CCcCCCCCCCccC---ceEcHHHHhhhh-hcCCeEEEECCcHHHHHHHHHHHHcCCe
Confidence 444333345799999999999 8999999999654 234444444433 3457799999999999999999999999
Q ss_pred EEEEEecCC----ccc----c-ccCCCCC-CeeeccceeEEcc--C---Cc--EEe--cCCc---EEeecEEEEecCccC
Q 013303 223 VHIASRSVA----DET----H-EKQPGYD-NMWLHSMVERANE--D---GT--VVF--RNGR---VVSADVIMHCTGYKY 280 (446)
Q Consensus 223 V~l~~r~~~----~~~----~-~~~~~~~-~v~~~~~v~~i~~--~---~~--v~~--~dG~---~~~~D~vi~atG~~~ 280 (446)
|+++.+... +.. + +.+.+.+ ++.....+.++.. + +. +.+ .+|. ++++|.||+|+|++|
T Consensus 236 Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p 315 (519)
T 3qfa_A 236 VTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDA 315 (519)
T ss_dssp EEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEE
T ss_pred EEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcc
Confidence 999998532 111 1 1111122 4455544444432 1 22 322 4563 467999999999999
Q ss_pred CCCCC--CC--------CCeeeeCCCCcccccccccCCCCCCCeEEecCCC-c-cCchhHHHHHHHHHHHHHcCC
Q 013303 281 NYPFL--ET--------NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQ-K-VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 281 ~~~~l--~~--------~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~-~-~~~~~~~~~qa~~~a~~l~g~ 343 (446)
+.++| +. .|.|.+|++++ ++.|+||++|++. . ....+.+..||+.+|+++.|.
T Consensus 316 ~~~~l~l~~~gl~~~~~~G~I~Vd~~~~----------Ts~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g~ 380 (519)
T 3qfa_A 316 CTRKIGLETVGVKINEKTGKIPVTDEEQ----------TNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAG 380 (519)
T ss_dssp SCSSSCSTTTTCCCCTTTCCBCCCTTSB----------CSSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCCCChhhcCcEEcCCCCeEeeCCCCc----------cCCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence 99874 22 34455555544 5589999999986 2 345578899999999999875
No 64
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=99.97 E-value=2.2e-31 Score=268.23 Aligned_cols=295 Identities=17% Similarity=0.217 Sum_probs=197.2
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccC-CccCceeecCCCCCcccC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS-SLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~-~~y~~l~~~~~~~~~~~~ 81 (446)
+||+|||||++|+++|..|++.|++|+|||+. .+||.|... ||.|++.++.. ..++.+...... +++.
T Consensus 4 ~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~~--------g~~psk~ll~~~~~~~~~~~~~~~--~g~~ 72 (464)
T 2a8x_A 4 YDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLNV--------GCIPSKALLRNAELVHIFTKDAKA--FGIS 72 (464)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHHH--------SHHHHHHHHHHHHHHHHHHHHTTT--TTEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCccccc--------CchhhHHHHHHHHHHHHHHHHHHh--cCCC
Confidence 69999999999999999999999999999997 789998753 44443322211 011111100000 0110
Q ss_pred C---CCCCcCCCCCCCCCCCCCC----HHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEE
Q 013303 82 A---YPFVARNYEGSVDLRRYPG----HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (446)
Q Consensus 82 d---~~~~~~~~~~~~~~~~~~~----~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~ 154 (446)
+ +++.. .... ...+.+.+.+.+++.+++ ++.++.+. + +. +.++|...+ +...++.
T Consensus 73 ~~~~~~~~~----------~~~~~~~~~~~l~~~l~~~~~~~gv~--~~~g~~~~-i--d~-~~v~V~~~~--G~~~~~~ 134 (464)
T 2a8x_A 73 GEVTFDYGI----------AYDRSRKVAEGRVAGVHFLMKKNKIT--EIHGYGTF-A--DA-NTLLVDLND--GGTESVT 134 (464)
T ss_dssp ECCEECHHH----------HHHHHHHHHHHHHHHHHHHHHHTTCE--EECEEEEE-S--SS-SEEEEEETT--SCCEEEE
T ss_pred CCCccCHHH----------HHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeEEEE-e--cC-CeEEEEeCC--CceEEEE
Confidence 0 00000 0000 022334456667777777 77766543 2 22 445555432 2224799
Q ss_pred EcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc--
Q 013303 155 FDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-- 232 (446)
Q Consensus 155 ~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~-- 232 (446)
||+||+||| +.|+.|+++|.+. .++++.+...... .+++|+|||+|.+|+|+|..|++.|.+|+++.+.+..
T Consensus 135 ~d~lViAtG--~~~~~~~~~g~~~---~~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~ 208 (464)
T 2a8x_A 135 FDNAIIATG--SSTRLVPGTSLSA---NVVTYEEQILSRE-LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP 208 (464)
T ss_dssp EEEEEECCC--EEECCCTTCCCBT---TEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred cCEEEECCC--CCCCCCCCCCCCc---eEEecHHHhhccc-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc
Confidence 999999999 7888898888654 2556555433322 4799999999999999999999999999999988641
Q ss_pred ---cc----c-ccCCCC-CCeeeccceeEEccCC-c--EEec-CC--cEEeecEEEEecCccCCCCCCC---------CC
Q 013303 233 ---ET----H-EKQPGY-DNMWLHSMVERANEDG-T--VVFR-NG--RVVSADVIMHCTGYKYNYPFLE---------TN 288 (446)
Q Consensus 233 ---~~----~-~~~~~~-~~v~~~~~v~~i~~~~-~--v~~~-dG--~~~~~D~vi~atG~~~~~~~l~---------~~ 288 (446)
.. + +.+.+. -++.....|.++..++ . +.+. || +++++|.||+|+|++|+.++|. +.
T Consensus 209 ~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~ 288 (464)
T 2a8x_A 209 NEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDR 288 (464)
T ss_dssp TSCHHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTT
T ss_pred ccCHHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCC
Confidence 00 1 111111 2556667888887543 2 4554 67 5789999999999999998742 34
Q ss_pred CeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcC
Q 013303 289 GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSG 342 (446)
Q Consensus 289 g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g 342 (446)
|.|.+|++++ ++.|+||++|++... ...+.+..||+.+|.++.|
T Consensus 289 G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 333 (464)
T 2a8x_A 289 KAIGVDDYMR----------TNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAG 333 (464)
T ss_dssp SSBCCCTTSB----------CSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHHT
T ss_pred CCEeECcCCc----------cCCCCEEEeECcCCCccCHHHHHHHHHHHHHHhcC
Confidence 5677776655 558999999998653 3457789999999999998
No 65
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=99.97 E-value=4.5e-31 Score=262.17 Aligned_cols=272 Identities=17% Similarity=0.159 Sum_probs=190.0
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCc--EEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHT--VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~--v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~ 80 (446)
+||+|||||+||+++|..|++.|++ |+|||+++.++..... + ++..+
T Consensus 10 ~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~---------------------l--------~~~~~-- 58 (415)
T 3lxd_A 10 ADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPP---------------------L--------SKEYL-- 58 (415)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGG---------------------G--------GTTTT--
T ss_pred CcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCccc---------------------C--------CHHHH--
Confidence 5899999999999999999999987 9999998754321100 0 00000
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv 160 (446)
... ....++..+..++.++.+++ ++++++|+.+++.. ++|++.++. ++.||+||+
T Consensus 59 ---~~~-------------~~~~~~~~~~~~~~~~~~i~--~~~~~~v~~id~~~---~~v~~~~g~----~~~~d~lvl 113 (415)
T 3lxd_A 59 ---ARE-------------KTFERICIRPAQFWEDKAVE--MKLGAEVVSLDPAA---HTVKLGDGS----AIEYGKLIW 113 (415)
T ss_dssp ---TTS-------------SCSGGGBSSCHHHHHHTTEE--EEETCCEEEEETTT---TEEEETTSC----EEEEEEEEE
T ss_pred ---cCC-------------CCHHHhccCCHHHHHHCCcE--EEeCCEEEEEECCC---CEEEECCCC----EEEeeEEEE
Confidence 000 00011112223445567777 88899999998643 677776553 789999999
Q ss_pred ccCCCCCCccCCCCCCCCCCccEEEeeecCCCC-----CCC-CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc--
Q 013303 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN-----PFQ-DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-- 232 (446)
Q Consensus 161 AtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~-----~~~-~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~-- 232 (446)
||| +.|+.|++||.+. . .+.+.....+.. ... +++|+|||+|.+|+|+|..+++.+.+|+++.+.+..
T Consensus 114 AtG--~~~~~~~i~g~~~-~-~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~ 189 (415)
T 3lxd_A 114 ATG--GDPRRLSCVGADL-A-GVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLA 189 (415)
T ss_dssp CCC--EECCCCBTTSSCC-B-TEECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred ccC--CccCCCCCCCccc-c-CEEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhh
Confidence 999 8999999999763 1 122211111100 112 799999999999999999999999999999987741
Q ss_pred --------ccccc-CCCC-CCeeeccceeEEccCC----cEEecCCcEEeecEEEEecCccCCCCCCCCC-----Ceeee
Q 013303 233 --------ETHEK-QPGY-DNMWLHSMVERANEDG----TVVFRNGRVVSADVIMHCTGYKYNYPFLETN-----GIVTV 293 (446)
Q Consensus 233 --------~~~~~-~~~~-~~v~~~~~v~~i~~~~----~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~-----g~i~~ 293 (446)
+.+.+ +.+. .++.....|.++..++ .|.++||+++++|.||+|+|+.|+.+++... +.|.+
T Consensus 190 ~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~gi~v 269 (415)
T 3lxd_A 190 RVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGGNGVDV 269 (415)
T ss_dssp TTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESCHHHHHTTCCCSSSEEC
T ss_pred hhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccChHHHHhCCCCcCCCEEE
Confidence 01111 1112 2566678899987643 3788999999999999999999998765322 22667
Q ss_pred CCCCcccccccccCCCCCCCeEEecCCCccCc------------hhHHHHHHHHHHHHHcCCC
Q 013303 294 DDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIP------------FPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~------------~~~~~~qa~~~a~~l~g~~ 344 (446)
|+..+ ++.|+||++|++..... ++.+..||+.+|+++.|+.
T Consensus 270 d~~~~----------t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~ 322 (415)
T 3lxd_A 270 DEFCR----------TSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAP 322 (415)
T ss_dssp CTTCB----------CSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCC----------cCCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCCC
Confidence 76655 45899999998764322 4678999999999999863
No 66
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=99.97 E-value=1.6e-31 Score=270.39 Aligned_cols=288 Identities=16% Similarity=0.159 Sum_probs=194.1
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
+||+|||||++|+++|..|++.|++|+|||+ +.+||.|.+. ||.|++.++.+........+ +..
T Consensus 27 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~--------gcip~k~l~~~a~~~~~~~~-------~~~ 90 (484)
T 3o0h_A 27 FDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVIR--------GCVPKKLYFYASQYAQEFSK-------SIG 90 (484)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHH--------SHHHHHHHHHHHHHHHHHHH-------HGG
T ss_pred CCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceecc--------CccccHHHHHHHHHHHHHHH-------HHh
Confidence 5999999999999999999999999999999 7899999864 55555433322211100000 111
Q ss_pred CCCCcCCCCCCCCCCCCCCHH-----------HHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEE-eCCCce
Q 013303 83 YPFVARNYEGSVDLRRYPGHE-----------EVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR-KKDDVV 150 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-----------~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~-~~~~~~ 150 (446)
|.+... . ...... .+..++....+..++. +..+ ++..++ .+++.+. ++
T Consensus 91 ~g~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~~~~i~-----~~~v~v~~~~---- 150 (484)
T 3o0h_A 91 FGWKYA-------D-PIFNWEKLVAAKNKEISRLEGLYREGLQNSNVH--IYES-RAVFVD-----EHTLELSVTG---- 150 (484)
T ss_dssp GTBCCC-------C-CEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEES-CEEEEE-----TTEEEETTTC----
T ss_pred CCcccC-------C-CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEe-EEEEee-----CCEEEEecCC----
Confidence 111100 0 011122 3334445555566665 4444 455543 2445553 22
Q ss_pred EEEEEcEEEEccCCCCCCc-cCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 151 EEETFDAVVVCNGHFSVPR-LAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 151 ~~~~~d~VVvAtG~~s~p~-~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
.++.||+||+||| +.|. .|.+||.+. +.++.++.... ..+++|+|||+|.+|+|+|..+++.+.+|+++.+.
T Consensus 151 ~~~~~d~lviAtG--~~p~~~p~i~G~~~----~~~~~~~~~~~-~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~ 223 (484)
T 3o0h_A 151 ERISAEKILIATG--AKIVSNSAIKGSDL----CLTSNEIFDLE-KLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRG 223 (484)
T ss_dssp CEEEEEEEEECCC--EEECCC--CBTGGG----SBCTTTGGGCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred eEEEeCEEEEccC--CCcccCCCCCCccc----cccHHHHHhHH-hcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECC
Confidence 3789999999999 8888 899999763 22333332222 34799999999999999999999999999999987
Q ss_pred CC-----cc----cc-ccCCCC-CCeeeccceeEEccCC---cEEecCCcEEeecEEEEecCccCCCCCC---------C
Q 013303 230 VA-----DE----TH-EKQPGY-DNMWLHSMVERANEDG---TVVFRNGRVVSADVIMHCTGYKYNYPFL---------E 286 (446)
Q Consensus 230 ~~-----~~----~~-~~~~~~-~~v~~~~~v~~i~~~~---~v~~~dG~~~~~D~vi~atG~~~~~~~l---------~ 286 (446)
+. +. .+ +.+.+. .++..+..|.++..++ .|.+.||+++++|.||+|+|++|+..+| +
T Consensus 224 ~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~ 303 (484)
T 3o0h_A 224 DLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVN 303 (484)
T ss_dssp SSSSTTSCHHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBC
T ss_pred CccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceEC
Confidence 64 00 01 111111 2556667888887653 3788899999999999999999999874 2
Q ss_pred CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303 287 TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 287 ~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~ 343 (446)
+.|.|.+|+..+ ++.|+||++|++.. ....+.+..||+.+|+++.|.
T Consensus 304 ~~G~i~vd~~~~----------t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 351 (484)
T 3o0h_A 304 EFGAVVVDEKMT----------TNVSHIWAVGDVTGHIQLTPVAIHDAMCFVKNAFEN 351 (484)
T ss_dssp TTSCBCCCTTSB----------CSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCEeECCCCC----------CCCCCEEEEEecCCCCcCHHHHHHHHHHHHHHHcCC
Confidence 445666666555 55899999999875 445578899999999999875
No 67
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=99.97 E-value=1.2e-30 Score=261.95 Aligned_cols=278 Identities=18% Similarity=0.254 Sum_probs=191.5
Q ss_pred CeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~ 80 (446)
+||+|||||++|+++|..|++. |.+|+|||+++.++..... +. .|. .. ..
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~-----------------~~--~~~------~g-~~-- 52 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCG-----------------IA--LYL------GK-EI-- 52 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGG-----------------HH--HHH------TT-CB--
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCccccc-----------------ch--hhh------cC-Cc--
Confidence 5899999999999999999998 9999999998755321100 00 000 00 00
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVV 159 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VV 159 (446)
..+.+ +++..++.+..++++++ ++++++|..++... . +|.+.+. +++..++.||+||
T Consensus 53 ~~~~~-----------------~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~-~--~v~v~~~~~g~~~~~~~d~lv 110 (452)
T 2cdu_A 53 KNNDP-----------------RGLFYSSPEELSNLGAN--VQMRHQVTNVDPET-K--TIKVKDLITNEEKTEAYDKLI 110 (452)
T ss_dssp GGGCG-----------------GGGBSCCHHHHHHTTCE--EEESEEEEEEEGGG-T--EEEEEETTTCCEEEEECSEEE
T ss_pred ccCCH-----------------HHhhhcCHHHHHHcCCE--EEeCCEEEEEEcCC-C--EEEEEecCCCceEEEECCEEE
Confidence 00000 00111123344567877 88899999998655 3 4555442 1223579999999
Q ss_pred EccCCCCCCccCCCCCCCCCCccEEEeeecCCCCC-----CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc--
Q 013303 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNP-----FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-- 232 (446)
Q Consensus 160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~-----~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~-- 232 (446)
+||| +.|+.|++||.+. ..++++..+.+... ..+++|+|||+|.+|+|+|..|++.+.+|+++.+.+..
T Consensus 111 iAtG--s~p~~p~i~g~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~ 186 (452)
T 2cdu_A 111 MTTG--SKPTVPPIPGIDS--SRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLY 186 (452)
T ss_dssp ECCC--EEECCCCCTTTTS--TTEEECSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTT
T ss_pred EccC--CCcCCCCCCCCCC--CCEEEeCcHHHHHHHHHHhccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhh
Confidence 9999 8999999999863 23555443322211 25799999999999999999999999999999987641
Q ss_pred ----c----cc-ccCCCC-CCeeeccceeEEcc-CCcE--EecCCcEEeecEEEEecCccCCCCCCCC------CCeeee
Q 013303 233 ----E----TH-EKQPGY-DNMWLHSMVERANE-DGTV--VFRNGRVVSADVIMHCTGYKYNYPFLET------NGIVTV 293 (446)
Q Consensus 233 ----~----~~-~~~~~~-~~v~~~~~v~~i~~-~~~v--~~~dG~~~~~D~vi~atG~~~~~~~l~~------~g~i~~ 293 (446)
. .+ +.+.+. .++..+..|.++.. ++.+ ...||+++++|.||+|||++|+.++++. .|.|.+
T Consensus 187 ~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~~~ll~~~l~~~~~G~i~V 266 (452)
T 2cdu_A 187 KYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTELLKGKVAMLDNGAIIT 266 (452)
T ss_dssp TTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCGGGTTTSCBCTTSCBCC
T ss_pred hhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCCHHHHHHhhhcCCCCCEEE
Confidence 0 01 111122 25667788999875 4433 3458889999999999999999987642 345666
Q ss_pred CCCCcccccccccCCCCCCCeEEecCCCcc-----------CchhHHHHHHHHHHHHHcCCC
Q 013303 294 DDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-----------IPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~~~~qa~~~a~~l~g~~ 344 (446)
|++++ ++.|+||++|++... ...+.+..||+.+|+++.|..
T Consensus 267 d~~~~----------t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 318 (452)
T 2cdu_A 267 DEYMH----------SSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDK 318 (452)
T ss_dssp CTTSB----------CSSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSSSCC
T ss_pred CCCcC----------cCCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhCCCC
Confidence 65554 458999999998642 346788999999999999863
No 68
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.97 E-value=1.4e-30 Score=262.88 Aligned_cols=302 Identities=16% Similarity=0.171 Sum_probs=201.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~ 80 (446)
++||+|||||++|+++|..|++.|++|+|||+.+.+||.|... ||.|++.++... .+..+..+.....+.+
T Consensus 6 ~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~--------g~~p~k~l~~~~~~~~~~~~~~~~~g~~~ 77 (470)
T 1dxl_A 6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNV--------GCIPSKALLHSSHMYHEAKHSFANHGVKV 77 (470)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHH--------SHHHHHHHHHHHHHHHHHHHTHHHHTEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCc--------CccchHHHHHHHHHHHHHHHHHHhcCccc
Confidence 5799999999999999999999999999999998999999764 455543322111 1111100000000000
Q ss_pred CCCCCCcCCCCCCCCCCCC-CCH----HHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEE
Q 013303 81 QAYPFVARNYEGSVDLRRY-PGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~-~~~----~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~ 155 (446)
....++ ...+ ... ..+.+.+..++++.+++ +++++.+. ++ . +.++|.+.++ ...++.|
T Consensus 78 ~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~-~~--~-~~~~v~~~~G--~~~~i~~ 140 (470)
T 1dxl_A 78 SNVEID---------LAAMMGQKDKAVSNLTRGIEGLFKKNKVT--YVKGYGKF-VS--P-SEISVDTIEG--ENTVVKG 140 (470)
T ss_dssp SCEEEC---------HHHHHHHHHHHHHHHHHHHHHHHHHHTCE--EEESCEEE-EE--T-TEEEECCSSS--CCEEEEC
T ss_pred CCCccC---------HHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeEEEE-ec--C-CEEEEEeCCC--ceEEEEc
Confidence 000000 0000 001 12334456667777887 78887654 43 2 4566654332 2247999
Q ss_pred cEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc---
Q 013303 156 DAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD--- 232 (446)
Q Consensus 156 d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~--- 232 (446)
|+||+||| +.|..|+++|.+. ..++++.+...... .+++|+|||+|.+|+|+|..|++.+.+|+++.+.+..
T Consensus 141 d~lIiAtG--s~p~~p~~~g~~~--~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~ 215 (470)
T 1dxl_A 141 KHIIIATG--SDVKSLPGVTIDE--KKIVSSTGALALSE-IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT 215 (470)
T ss_dssp SEEEECCC--EEECCBTTBCCCS--SSEECHHHHTTCSS-CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT
T ss_pred CEEEECCC--CCCCCCCCCCCCc--ccEEeHHHhhhhhh-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc
Confidence 99999999 7899999988754 13566665544332 4799999999999999999999999999999988641
Q ss_pred --cc----c-ccCCCC-CCeeeccceeEEccCCc---EEec---CC--cEEeecEEEEecCccCCCCCC--CC-------
Q 013303 233 --ET----H-EKQPGY-DNMWLHSMVERANEDGT---VVFR---NG--RVVSADVIMHCTGYKYNYPFL--ET------- 287 (446)
Q Consensus 233 --~~----~-~~~~~~-~~v~~~~~v~~i~~~~~---v~~~---dG--~~~~~D~vi~atG~~~~~~~l--~~------- 287 (446)
.. + +.+.+. .++.....|.++..++. +.+. || +++++|.||+|+|++|+.++| +.
T Consensus 216 ~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~ 295 (470)
T 1dxl_A 216 MDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDK 295 (470)
T ss_dssp SCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCS
T ss_pred ccHHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCC
Confidence 11 1 111122 25666778999976542 4554 55 678999999999999999873 33
Q ss_pred CCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303 288 NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 288 ~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~ 343 (446)
.|.|.+|++++ ++.|+||++|++... ...+.+..||+.+|.++.|.
T Consensus 296 ~G~i~vd~~~~----------t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 342 (470)
T 1dxl_A 296 LGRILVNERFS----------TNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGK 342 (470)
T ss_dssp SSCBCCCTTCB----------CSSTTEEECSTTSSSCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCEeECcCCc----------cCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence 24455555443 458999999998653 34577899999999999985
No 69
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.97 E-value=2.7e-31 Score=266.89 Aligned_cols=294 Identities=15% Similarity=0.198 Sum_probs=195.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCC-CCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPR-ELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~-~~~~ 79 (446)
++||+|||||+||+++|..|++.|++|+|||+ +.+||+|.+. ||.|++.++.+. .+..+. +... ..++
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~~--------g~~Psk~l~~~~~~~~~~~-~~~~~~~~g 74 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNI--------GCIPSKALIHVAEQFHQAS-RFTEPSPLG 74 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHHH--------SHHHHHHHHHHHHHHHHHH-HTTSCCTTC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCCc--------CcHhHHHHHHHHHHHHHHh-hcccccccC
Confidence 47999999999999999999999999999999 7899999864 566655433221 222221 1110 0001
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRY-----------LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~y-----------l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~ 148 (446)
+++. ....+..++..+ +.++.++.+++ +..++.+. ++ .++|++.+
T Consensus 75 ---~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~~~~-~~-----~~~v~v~~--- 130 (458)
T 1lvl_A 75 ---ISVA----------SPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVK--VVHGWAKV-LD-----GKQVEVDG--- 130 (458)
T ss_dssp ---CCCC----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EECSCEEE-EE-----TTEEEETT---
T ss_pred ---cccC----------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEEEEEEE-cc-----CCEEEEee---
Confidence 1110 011223333333 34556667777 77666543 32 25565532
Q ss_pred ceEEEEEcEEEEccCCCCCCccCC-CCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEE
Q 013303 149 VVEEETFDAVVVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS 227 (446)
Q Consensus 149 ~~~~~~~d~VVvAtG~~s~p~~p~-i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~ 227 (446)
.++.||+||+||| +.|+.|+ +| .+ +.++++.++..... .+++|+|||+|.+|+|+|..|++.|.+|+++.
T Consensus 131 --~~~~~d~lviATG--s~p~~~~~~~-~~---~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~ 201 (458)
T 1lvl_A 131 --QRIQCEHLLLATG--SSSVELPMLP-LG---GPVISSTEALAPKA-LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVE 201 (458)
T ss_dssp --EEEECSEEEECCC--EEECCBTTBC-CB---TTEECHHHHTCCSS-CCSEEEEECCSHHHHHHHHHHHHHTCEEEEEC
T ss_pred --EEEEeCEEEEeCC--CCCCCCCCCC-cc---CcEecHHHHhhhhc-cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEE
Confidence 3789999999999 7887775 55 22 24667766655433 57999999999999999999999999999999
Q ss_pred ecCCc-----cc----c-ccCCCC-CCeeeccceeEEccCCcEEec--CC--cEEeecEEEEecCccCCCCCC--CCCCe
Q 013303 228 RSVAD-----ET----H-EKQPGY-DNMWLHSMVERANEDGTVVFR--NG--RVVSADVIMHCTGYKYNYPFL--ETNGI 290 (446)
Q Consensus 228 r~~~~-----~~----~-~~~~~~-~~v~~~~~v~~i~~~~~v~~~--dG--~~~~~D~vi~atG~~~~~~~l--~~~g~ 290 (446)
+.+.. .. + +.+.+. -++..+..|.++.. +.+.+. +| +++++|.||+|||++|+.+++ +..|
T Consensus 202 ~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~-~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g- 279 (458)
T 1lvl_A 202 ARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYEN-GCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLD- 279 (458)
T ss_dssp SSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEET-TEEEEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSC-
T ss_pred cCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEe-CCEEEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcC-
Confidence 87641 00 1 111111 24556678888876 445554 67 579999999999999999874 3323
Q ss_pred eeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303 291 VTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 291 i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~ 343 (446)
+.+++. ...... .+. ++.|+||++|++... ...+.+..||+.+|.++.|.
T Consensus 280 ~~~~~~-~i~vd~-~~~-t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 330 (458)
T 1lvl_A 280 LKMNGA-AIAIDE-RCQ-TSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGK 330 (458)
T ss_dssp CCEETT-EECCCT-TCB-CSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred CcccCC-EEeECC-CCc-CCCCCEEEeeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence 333332 111211 223 458999999988643 34577899999999999985
No 70
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.97 E-value=9e-32 Score=262.38 Aligned_cols=265 Identities=21% Similarity=0.261 Sum_probs=185.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
..||+|||||+||++||..|++.| +|+|||+++..+ +. +..++ ..+ .+.
T Consensus 8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~----~~-------------~~~l~----~~~--------~g~- 56 (367)
T 1xhc_A 8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPY----YS-------------KPMLS----HYI--------AGF- 56 (367)
T ss_dssp -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCC----CC-------------STTHH----HHH--------TTS-
T ss_pred CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCc----cc-------------cchhH----HHH--------hCC-
Confidence 358999999999999999999999 999999976431 10 00000 000 000
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.++ +++..+..++.++++++ ++++++|+.+++. .++|+ .++. ++.||+||||
T Consensus 57 -~~~-----------------~~~~~~~~~~~~~~~v~--~~~g~~v~~id~~---~~~V~-~~g~----~~~~d~lViA 108 (367)
T 1xhc_A 57 -IPR-----------------NRLFPYSLDWYRKRGIE--IRLAEEAKLIDRG---RKVVI-TEKG----EVPYDTLVLA 108 (367)
T ss_dssp -SCG-----------------GGGCSSCHHHHHHHTEE--EECSCCEEEEETT---TTEEE-ESSC----EEECSEEEEC
T ss_pred -CCH-----------------HHhccCCHHHHHhCCcE--EEECCEEEEEECC---CCEEE-ECCc----EEECCEEEEC
Confidence 011 11111223445567876 8888899999864 37777 4443 7999999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCC-----CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc----
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPF-----QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD---- 232 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~-----~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~---- 232 (446)
|| +.|+.|++||.+ .+++...+.+...+ .+++|+|||+|.+|+|+|..|++.|.+|+++.+.+..
T Consensus 109 TG--s~p~~p~i~G~~----~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~ 182 (367)
T 1xhc_A 109 TG--ARAREPQIKGKE----YLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGLD 182 (367)
T ss_dssp CC--EEECCCCSBTGG----GEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTTCC
T ss_pred CC--CCCCCCCCCCcC----CEEEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeeccCC
Confidence 99 899999999832 24444333222211 3589999999999999999999999999999987641
Q ss_pred c----cc-ccCCCCC-CeeeccceeEEccCCcEEecCCcEEeecEEEEecCccCCCCCCCCC-----CeeeeCCCCcccc
Q 013303 233 E----TH-EKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETN-----GIVTVDDNRVGPL 301 (446)
Q Consensus 233 ~----~~-~~~~~~~-~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~-----g~i~~~~~~~~~l 301 (446)
. .+ +.+.+.+ ++.....|.++.. ..|.++||+ +++|.||+|+|++|+.++++.. +.|.+|+.++
T Consensus 183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~-~~v~~~~g~-i~~D~vi~a~G~~p~~~ll~~~gl~~~~gi~Vd~~~~--- 257 (367)
T 1xhc_A 183 EELSNMIKDMLEETGVKFFLNSELLEANE-EGVLTNSGF-IEGKVKICAIGIVPNVDLARRSGIHTGRGILIDDNFR--- 257 (367)
T ss_dssp HHHHHHHHHHHHHTTEEEECSCCEEEECS-SEEEETTEE-EECSCEEEECCEEECCHHHHHTTCCBSSSEECCTTSB---
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEe-eEEEECCCE-EEcCEEEECcCCCcCHHHHHhCCCCCCCCEEECCCcc---
Confidence 0 01 1111122 4556678899874 359999998 9999999999999998765322 2266666554
Q ss_pred cccccCCCCCCCeEEecCCCcc-----CchhHHHHHHHHHHHHHcCC
Q 013303 302 YKHVFPPVLAPGLSFVGIPQKV-----IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 302 ~~~~~~~~~~p~l~~iG~~~~~-----~~~~~~~~qa~~~a~~l~g~ 343 (446)
++.|+||++|++... ...+.+..||+.+|+++.|.
T Consensus 258 -------t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~ 297 (367)
T 1xhc_A 258 -------TSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKGE 297 (367)
T ss_dssp -------CSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTTC
T ss_pred -------cCCCCEEEeEeeeecCCCCccHHHHHHHHHHHHHHHhcCC
Confidence 458999999988531 34578899999999999985
No 71
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=99.97 E-value=1.4e-30 Score=260.97 Aligned_cols=276 Identities=21% Similarity=0.249 Sum_probs=189.9
Q ss_pred CeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~ 80 (446)
+||+|||||+||+++|..|++. |.+|+|||+++.+|.. ... + ..| ...
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~-~~~----------------~--~~~------~~~----- 50 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFL-SAG----------------M--QLY------LEG----- 50 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBC-GGG----------------H--HHH------HTT-----
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcc-ccc----------------c--hhh------hcC-----
Confidence 5899999999999999999998 8999999998765411 000 0 000 000
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEe-CCCceEEEEEcEEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVV 159 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~-~~~~~~~~~~d~VV 159 (446)
.++ ..+++..++.+..++++++ ++++++|..++... .+|++.+ ..++..++.||+||
T Consensus 51 -~~~----------------~~~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~---~~v~~~~~~~g~~~~~~~d~lv 108 (447)
T 1nhp_A 51 -KVK----------------DVNSVRYMTGEKMESRGVN--VFSNTEITAIQPKE---HQVTVKDLVSGEERVENYDKLI 108 (447)
T ss_dssp -SSC----------------CGGGSBSCCHHHHHHTTCE--EEETEEEEEEETTT---TEEEEEETTTCCEEEEECSEEE
T ss_pred -ccC----------------CHHHhhcCCHHHHHHCCCE--EEECCEEEEEeCCC---CEEEEEecCCCceEEEeCCEEE
Confidence 000 0011111223344566776 88899999998654 3555554 22333468999999
Q ss_pred EccCCCCCCccCCCCCCCCCCccEEEeeecCCC-------CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc
Q 013303 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD 232 (446)
Q Consensus 160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~-------~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~ 232 (446)
+||| +.|..|++||.+. . .++++..+.+. ....+++|+|||+|.+|+|+|..|++.|.+|+++.+.+..
T Consensus 109 iAtG--~~p~~p~i~G~~~-~-~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 184 (447)
T 1nhp_A 109 ISPG--AVPFELDIPGKDL-D-NIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP 184 (447)
T ss_dssp ECCC--EEECCCCSTTTTS-B-SEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred EcCC--CCcCCCCCCCCCC-C-CeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccc
Confidence 9999 8899999999863 2 35554433221 1125799999999999999999999999999999987641
Q ss_pred ------c----cc-ccCCCCC-CeeeccceeEEccCCcE--EecCCcEEeecEEEEecCccCCCCCCCC------CCeee
Q 013303 233 ------E----TH-EKQPGYD-NMWLHSMVERANEDGTV--VFRNGRVVSADVIMHCTGYKYNYPFLET------NGIVT 292 (446)
Q Consensus 233 ------~----~~-~~~~~~~-~v~~~~~v~~i~~~~~v--~~~dG~~~~~D~vi~atG~~~~~~~l~~------~g~i~ 292 (446)
. .+ +.+.+.+ ++..+..|.++..++.+ ...+|+++++|.||+|||++|+.++++. .|.|.
T Consensus 185 l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~i~~d~vi~a~G~~p~~~~~~~~~~~~~~G~i~ 264 (447)
T 1nhp_A 185 LGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIK 264 (447)
T ss_dssp TTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEESSCEEECSEEEECSCEEESCGGGTTTSCBCTTSCBC
T ss_pred ccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEECCCEEECCEEEECcCCCCChHHHHhhhhhcCCCcEE
Confidence 0 01 1111222 45566788998765432 3347788999999999999999887643 34456
Q ss_pred eCCCCcccccccccCCCCCCCeEEecCCCcc-----------CchhHHHHHHHHHHHHHcCCC
Q 013303 293 VDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-----------IPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~~~~qa~~~a~~l~g~~ 344 (446)
+|++++ ++.|+||++|++... ...+.+..||+.+|.++.|..
T Consensus 265 Vd~~~~----------t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~ 317 (447)
T 1nhp_A 265 TDEYMR----------TSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPV 317 (447)
T ss_dssp CCTTCB----------CSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCC
T ss_pred ECcccc----------CCCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhcCCC
Confidence 665544 458999999987642 245788999999999999853
No 72
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=99.97 E-value=7.9e-31 Score=259.54 Aligned_cols=266 Identities=16% Similarity=0.147 Sum_probs=187.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~ 79 (446)
.+||+|||||++|+++|..|++.|. +|+|||+++.++..... .+..+ ...
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~------------------~~~~~---~~~------- 58 (408)
T 2gqw_A 7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPP------------------LSKDF---MAH------- 58 (408)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGG------------------GGTHH---HHH-------
T ss_pred CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCC------------------CCHHH---hCC-------
Confidence 4799999999999999999999997 59999997654210000 00000 000
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV 159 (446)
.. ... . ++. ..++++++ ++++++|+.+++. .++|++.++. ++.||+||
T Consensus 59 --~~--~~~---------~---------~~~-~~~~~~v~--~~~~~~v~~i~~~---~~~v~~~~g~----~~~~d~lv 106 (408)
T 2gqw_A 59 --GD--AEK---------I---------RLD-CKRAPEVE--WLLGVTAQSFDPQ---AHTVALSDGR----TLPYGTLV 106 (408)
T ss_dssp --CC--GGG---------S---------BCC-CTTSCSCE--EEETCCEEEEETT---TTEEEETTSC----EEECSEEE
T ss_pred --Cc--hhh---------h---------hHH-HHHHCCCE--EEcCCEEEEEECC---CCEEEECCCC----EEECCEEE
Confidence 00 000 0 000 12345665 8889999999864 3778775543 78999999
Q ss_pred EccCCCCCCccCCC-CCCCCCCccEEEeeecCCC-----CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc-
Q 013303 160 VCNGHFSVPRLAQV-PGIDSWPGKQMHSHNYRIP-----NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD- 232 (446)
Q Consensus 160 vAtG~~s~p~~p~i-~G~~~~~g~~~hs~~~~~~-----~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~- 232 (446)
+||| +.|+.|++ ||.+ .+ +.+.....+. ....+++|+|||+|.+|+|+|..|++.|.+|+++.+.+..
T Consensus 107 iAtG--~~~~~~~i~~G~~--~~-v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l 181 (408)
T 2gqw_A 107 LATG--AAPRALPTLQGAT--MP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM 181 (408)
T ss_dssp ECCC--EEECCCGGGTTCS--SC-EEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred ECCC--CCCCCCCccCCCC--Cc-EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccc
Confidence 9999 78999998 9976 22 3333222111 1124799999999999999999999999999999987641
Q ss_pred -----cc----c-ccCCCC-CCeeeccceeEEccCCcEEecCCcEEeecEEEEecCccCCCCCCCC------CCeeeeCC
Q 013303 233 -----ET----H-EKQPGY-DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLET------NGIVTVDD 295 (446)
Q Consensus 233 -----~~----~-~~~~~~-~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~------~g~i~~~~ 295 (446)
.. + +.+.+. -++..+..|.++. ++.|+++||+++++|.||+|+|++|+.+++.. .| |.+|+
T Consensus 182 ~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~~g-i~Vd~ 259 (408)
T 2gqw_A 182 SRAAPATLADFVARYHAAQGVDLRFERSVTGSV-DGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLACDDG-IFVDA 259 (408)
T ss_dssp TTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-TTEEEETTSCEEECSEEEECSCEEECCHHHHHHTCCBSSS-EECCT
T ss_pred ccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-CCEEEECCCCEEEcCEEEECcCCCccHHHHHhCCCCCCCC-EEECC
Confidence 00 1 111122 2566677899997 45799999999999999999999999876532 34 66776
Q ss_pred CCcccccccccCCCCCCCeEEecCCCccC-----------chhHHHHHHHHHHHHHcCCC
Q 013303 296 NRVGPLYKHVFPPVLAPGLSFVGIPQKVI-----------PFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 296 ~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-----------~~~~~~~qa~~~a~~l~g~~ 344 (446)
+.+ ++.|+||++|++.... ....+..||+.+|+++.|..
T Consensus 260 ~~~----------t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 309 (408)
T 2gqw_A 260 YGR----------TTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPT 309 (408)
T ss_dssp TCB----------CSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTT
T ss_pred CCc----------cCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCC
Confidence 655 4589999999886432 34678999999999999864
No 73
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=99.97 E-value=2e-30 Score=256.59 Aligned_cols=271 Identities=16% Similarity=0.188 Sum_probs=187.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~ 79 (446)
+++|+|||||+||+++|..|++.|+ +|+|||+++..+..-.. + ++..+.
T Consensus 1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~---------------------l--------~~~~l~ 51 (404)
T 3fg2_P 1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPP---------------------L--------SKAYLK 51 (404)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGG---------------------G--------GTGGGG
T ss_pred CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCcc---------------------C--------CHHHHC
Confidence 4799999999999999999999998 89999998744211000 0 000000
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV 159 (446)
. +... . ++..+..++..+.+++ ++. ++|+.+++.. .+|++.++. ++.||+||
T Consensus 52 ~-~~~~-----------~------~~~~~~~~~~~~~~i~--~~~-~~v~~id~~~---~~v~~~~g~----~~~~d~lv 103 (404)
T 3fg2_P 52 S-GGDP-----------N------SLMFRPEKFFQDQAIE--LIS-DRMVSIDREG---RKLLLASGT----AIEYGHLV 103 (404)
T ss_dssp S-CCCT-----------T------SSBSSCHHHHHHTTEE--EEC-CCEEEEETTT---TEEEESSSC----EEECSEEE
T ss_pred C-CCCH-----------H------HccCCCHHHHHhCCCE--EEE-EEEEEEECCC---CEEEECCCC----EEECCEEE
Confidence 0 0000 0 0011122344556776 666 8999998654 567776654 78999999
Q ss_pred EccCCCCCCccCCCCCCCCCCccEEEeeecCC-----CCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc--
Q 013303 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRI-----PNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-- 232 (446)
Q Consensus 160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~-----~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~-- 232 (446)
+||| +.|+.|++||.+. . .+++.....+ .....+++|+|||+|.+|+|+|..+++.+.+|+++.+.+..
T Consensus 104 lAtG--~~p~~~~i~g~~~-~-~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~ 179 (404)
T 3fg2_P 104 LATG--ARNRMLDVPNASL-P-DVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMA 179 (404)
T ss_dssp ECCC--EEECCCCSTTTTS-T-TEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT
T ss_pred EeeC--CCccCCCCCCCCC-C-cEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchh
Confidence 9999 7899999999753 1 2222111111 11125799999999999999999999999999999987641
Q ss_pred --------ccccc-CCCC-CCeeeccceeEEccCC----cEEecCCcEEeecEEEEecCccCCCCCCCC------CCeee
Q 013303 233 --------ETHEK-QPGY-DNMWLHSMVERANEDG----TVVFRNGRVVSADVIMHCTGYKYNYPFLET------NGIVT 292 (446)
Q Consensus 233 --------~~~~~-~~~~-~~v~~~~~v~~i~~~~----~v~~~dG~~~~~D~vi~atG~~~~~~~l~~------~g~i~ 292 (446)
+.+.+ +.+. .++.....|.++..++ .|.++||+++++|.||+|||+.|+.+++.. .| |.
T Consensus 180 ~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~G-i~ 258 (404)
T 3fg2_P 180 RVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLPTAAG-II 258 (404)
T ss_dssp TTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBSSS-EE
T ss_pred hccCHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccCHHHHHhCCCCCCCC-EE
Confidence 01111 1111 2555667888887542 378899999999999999999999876532 33 66
Q ss_pred eCCCCcccccccccCCCCCCCeEEecCCCccCc-----------hhHHHHHHHHHHHHHcCCC
Q 013303 293 VDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIP-----------FPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~-----------~~~~~~qa~~~a~~l~g~~ 344 (446)
+|+..+ ++.|+||++|++..... ++.+..||+.+|+++.|+.
T Consensus 259 vd~~~~----------t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~ 311 (404)
T 3fg2_P 259 VDQQLL----------TSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLTGDA 311 (404)
T ss_dssp ECTTSB----------CSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTCC
T ss_pred ECCCcc----------cCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHHHHhCCCC
Confidence 776655 45899999998864322 5778999999999999864
No 74
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=99.96 E-value=3e-30 Score=260.72 Aligned_cols=276 Identities=19% Similarity=0.220 Sum_probs=188.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~ 79 (446)
++||+|||||++|+++|..|++. |.+|+|||+.+..++.... ++ .+ ...
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~-----------------~~--~~------~~~---- 86 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCG-----------------LP--YV------ISG---- 86 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGG-----------------HH--HH------HTT----
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCC-----------------cc--hh------hcC----
Confidence 46999999999999999999996 8999999998765421110 00 00 000
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHH-HHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEe-CCCceEEEEEcE
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVL-RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDA 157 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~-~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~-~~~~~~~~~~d~ 157 (446)
..+ ..+++. .+...+.++++++ ++++++|..++... . +|++.+ .+++..++.||+
T Consensus 87 --~~~----------------~~~~l~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~-~--~v~v~~~~~g~~~~~~~d~ 143 (480)
T 3cgb_A 87 --AIA----------------STEKLIARNVKTFRDKYGID--AKVRHEVTKVDTEK-K--IVYAEHTKTKDVFEFSYDR 143 (480)
T ss_dssp --SSS----------------CGGGGBSSCHHHHHHTTCCE--EESSEEEEEEETTT-T--EEEEEETTTCCEEEEECSE
T ss_pred --CcC----------------CHHHhhhcCHHHHHhhcCCE--EEeCCEEEEEECCC-C--EEEEEEcCCCceEEEEcCE
Confidence 000 001111 1133444566877 88899999998654 3 455544 223334789999
Q ss_pred EEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCC-------CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN-------PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 158 VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~-------~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
||+||| +.|+.|++||.+. . .+++...+.+.. ...+++|+|||+|.+|+|+|..|++.+.+|+++.+.+
T Consensus 144 lviAtG--~~p~~p~i~G~~~-~-~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 219 (480)
T 3cgb_A 144 LLIATG--VRPVMPEWEGRDL-Q-GVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERND 219 (480)
T ss_dssp EEECCC--EEECCCCCBTTTS-B-TEECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred EEECCC--CcccCCCCCCccC-C-CEEEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCC
Confidence 999999 8899999999863 2 244433222111 1267999999999999999999999999999999876
Q ss_pred Cc-----c----cc-ccCCCC-CCeeeccceeEEccCCcE--EecCCcEEeecEEEEecCccCCCCCCCCC-------Ce
Q 013303 231 AD-----E----TH-EKQPGY-DNMWLHSMVERANEDGTV--VFRNGRVVSADVIMHCTGYKYNYPFLETN-------GI 290 (446)
Q Consensus 231 ~~-----~----~~-~~~~~~-~~v~~~~~v~~i~~~~~v--~~~dG~~~~~D~vi~atG~~~~~~~l~~~-------g~ 290 (446)
.. . .+ +.+.+. .++.....|.++..++.+ ...++.++++|.||+|+|+.|+.+++... |.
T Consensus 220 ~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~ 299 (480)
T 3cgb_A 220 HIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGA 299 (480)
T ss_dssp GTTSSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSBEEEEEETTEEEECSEEEECSCEEESCGGGTTSCCCBCTTSC
T ss_pred chhhcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEECCCEEEcCEEEECcCCCcChHHHHhCCcccCCCCC
Confidence 41 0 01 111112 245667788888766543 33456689999999999999998876543 34
Q ss_pred eeeCCCCcccccccccCCCCCCCeEEecCCCcc-----------CchhHHHHHHHHHHHHHcCC
Q 013303 291 VTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-----------IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 291 i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~~~~qa~~~a~~l~g~ 343 (446)
|.+|++++ ++.|+||++|++... ...+.+..||+.+|+++.|.
T Consensus 300 I~Vd~~~~----------ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~ 353 (480)
T 3cgb_A 300 IEVNAYMQ----------TNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDK 353 (480)
T ss_dssp BCCCTTSB----------CSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTC
T ss_pred EEECCCcc----------CCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcCC
Confidence 55555443 458999999988632 23578899999999999985
No 75
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=99.96 E-value=4.4e-30 Score=252.39 Aligned_cols=269 Identities=14% Similarity=0.196 Sum_probs=191.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~ 79 (446)
++||+|||||+||+++|..|++.| .+|+++|++. |..|... .++. .
T Consensus 4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~--g~~~~~~---------------~l~~-~-------------- 51 (384)
T 2v3a_A 4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD--GRSYSKP---------------MLST-G-------------- 51 (384)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC--CCEECGG---------------GGGG-T--------------
T ss_pred CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC--CCccCcc---------------cccH-H--------------
Confidence 479999999999999999999998 5689999864 4333321 0000 0
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHH-HHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVL-RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~-~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V 158 (446)
++ ......++. .++..++++++++ ++++++|..++... ++|++.+ .++.||+|
T Consensus 52 ---~~-------------~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~---~~v~~~~-----~~~~~d~l 105 (384)
T 2v3a_A 52 ---FS-------------KNKDADGLAMAEPGAMAEQLNAR--ILTHTRVTGIDPGH---QRIWIGE-----EEVRYRDL 105 (384)
T ss_dssp ---TT-------------TTCCHHHHEEECHHHHHHHTTCE--EECSCCCCEEEGGG---TEEEETT-----EEEECSEE
T ss_pred ---Hh-------------CCCCHHHhhccCHHHHHHhCCcE--EEeCCEEEEEECCC---CEEEECC-----cEEECCEE
Confidence 00 001223443 3567777788887 88889999988643 6676632 26899999
Q ss_pred EEccCCCCCCccCCCCCCCCCCccEEEeeecCCCC-----CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC--
Q 013303 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN-----PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-- 231 (446)
Q Consensus 159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~-----~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-- 231 (446)
|+||| +.|..|++||.+. ..++++..+.+.. ...+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.
T Consensus 106 viAtG--~~p~~p~i~g~~~--~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~ 181 (384)
T 2v3a_A 106 VLAWG--AEPIRVPVEGDAQ--DALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVM 181 (384)
T ss_dssp EECCC--EEECCCCCBSTTT--TCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred EEeCC--CCcCCCCCCCcCc--CCEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchh
Confidence 99999 8999999998753 2355544432211 12479999999999999999999999999999998764
Q ss_pred ----cc----cc-ccCCCC-CCeeeccceeEEccCC---cEEecCCcEEeecEEEEecCccCCCCCCCC------CCeee
Q 013303 232 ----DE----TH-EKQPGY-DNMWLHSMVERANEDG---TVVFRNGRVVSADVIMHCTGYKYNYPFLET------NGIVT 292 (446)
Q Consensus 232 ----~~----~~-~~~~~~-~~v~~~~~v~~i~~~~---~v~~~dG~~~~~D~vi~atG~~~~~~~l~~------~g~i~ 292 (446)
+. .+ +.+.+. ..+.....|.++..++ .+.+.||+++++|.||+|+|+.|+.+++.. .| |.
T Consensus 182 ~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~~g-i~ 260 (384)
T 2v3a_A 182 PGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRG-IV 260 (384)
T ss_dssp TTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCHHHHHTTCCBSSS-EE
T ss_pred hcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCHHHHHHCCCCCCCC-EE
Confidence 10 11 111122 2566677888886533 277889999999999999999999876432 34 66
Q ss_pred eCCCCcccccccccCCCCCCCeEEecCCCc--cC---chhHHHHHHHHHHHHHcCC
Q 013303 293 VDDNRVGPLYKHVFPPVLAPGLSFVGIPQK--VI---PFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~--~~---~~~~~~~qa~~~a~~l~g~ 343 (446)
+|++.+ ++.|+||++|++.. .. ....+..||+.+|+++.|.
T Consensus 261 vd~~~~----------t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~~i~g~ 306 (384)
T 2v3a_A 261 VDRSLR----------TSHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLAGN 306 (384)
T ss_dssp ECTTCB----------CSSTTEEECGGGEEETTBCCCSHHHHHHHHHHHHHHHTTC
T ss_pred ECCCCC----------CCCCCEEEeeeeeeECCCCcchHHHHHHHHHHHHHHhcCC
Confidence 776654 55899999998863 21 2455689999999999985
No 76
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=99.96 E-value=1.5e-30 Score=270.03 Aligned_cols=297 Identities=16% Similarity=0.242 Sum_probs=189.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC-C-------CcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-E-------QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL 73 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~-~-------~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~ 73 (446)
.+||+||||||||++||..|++.|++|+|||+. + .+||+|.+. ||.|++.+..+........+
T Consensus 107 ~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~--------g~iP~~~l~~~~~~~~~~~~- 177 (598)
T 2x8g_A 107 DYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNV--------GCIPKKLMHQAGLLSHALED- 177 (598)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHH--------SHHHHHHHHHHHHHHHHHHH-
T ss_pred cccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEecc--------CCCchHHHHHHHHHHHHHhh-
Confidence 479999999999999999999999999999973 2 478887653 44443322211110000000
Q ss_pred CCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-----------CCCCcEEeCeEEEEEEEcCCCceEEE
Q 013303 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-----------GVDQVVRLHTEVLNARLVESNKWKVK 142 (446)
Q Consensus 74 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-----------~l~~~i~~~~~V~~v~~~~~~~~~v~ 142 (446)
...|.+... .........++.+|+..+++++ ++. +. ...+..++ .|.+.
T Consensus 178 ------~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~~~~~-----~~~v~ 237 (598)
T 2x8g_A 178 ------AEHFGWSLD------RSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVT--YL-NAKGRLIS-----PHEVQ 237 (598)
T ss_dssp ------HHHTTCCCC------GGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EE-CSEEEEEE-----TTEEE
T ss_pred ------HHhCCcccc------CCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--EE-EEEEEEcC-----CCEEE
Confidence 001111000 0001234577777877665542 332 22 22333332 35666
Q ss_pred EEeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCE
Q 013303 143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE 222 (446)
Q Consensus 143 ~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~ 222 (446)
+...+++..++.||+|||||| +.|+.|++||.+.+ .+++.++... .+.+++|+|||+|.+|+|+|..|++.|.+
T Consensus 238 v~~~~g~~~~~~~d~lviAtG--s~p~~p~i~G~~~~---~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~ 311 (598)
T 2x8g_A 238 ITDKNQKVSTITGNKIILATG--ERPKYPEIPGAVEY---GITSDDLFSL-PYFPGKTLVIGASYVALECAGFLASLGGD 311 (598)
T ss_dssp EECTTCCEEEEEEEEEEECCC--EEECCCSSTTHHHH---CEEHHHHTTC-SSCCCSEEEECCSHHHHHHHHHHHHTTCC
T ss_pred EEeCCCCeEEEEeCEEEEeCC--CCCCCCCCCCcccc---eEcHHHHhhC-ccCCCEEEEECCCHHHHHHHHHHHHcCCE
Confidence 655444445789999999999 89999999997542 3455444332 24578999999999999999999999999
Q ss_pred EEEEEecCC----cccc-----ccCCCCC-CeeeccceeEEcc-------C---CcEE----ecCCcEEe--ecEEEEec
Q 013303 223 VHIASRSVA----DETH-----EKQPGYD-NMWLHSMVERANE-------D---GTVV----FRNGRVVS--ADVIMHCT 276 (446)
Q Consensus 223 V~l~~r~~~----~~~~-----~~~~~~~-~v~~~~~v~~i~~-------~---~~v~----~~dG~~~~--~D~vi~at 276 (446)
|+++.|+.. +..+ +.+.+.+ ++.....+.++.. + +.+. +.+|++++ +|.||+|+
T Consensus 312 Vtlv~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~ 391 (598)
T 2x8g_A 312 VTVMVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAV 391 (598)
T ss_dssp EEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECS
T ss_pred EEEEECCcCcCcCCHHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEe
Confidence 999998632 1111 1111112 3444544555521 1 3332 36887765 99999999
Q ss_pred CccCCCCCCC---------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCC-c-cCchhHHHHHHHHHHHHHcCC
Q 013303 277 GYKYNYPFLE---------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQ-K-VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 277 G~~~~~~~l~---------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~-~-~~~~~~~~~qa~~~a~~l~g~ 343 (446)
|++|+.++|. +.|.|.+|+..+ ++.|+||++|++. . ....+.+..||+.+|.++.|.
T Consensus 392 G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~----------ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 459 (598)
T 2x8g_A 392 GREPQLSKVLCETVGVKLDKNGRVVCTDDEQ----------TTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAG 459 (598)
T ss_dssp CEEECGGGTBCGGGCCCBCTTSCBCCCTTSB----------CSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHC
T ss_pred CCccccCccCchhcCceECCCCcEEeCCCCc----------CCCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhcC
Confidence 9999988742 334555555543 5589999999984 2 345678899999999999864
No 77
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=99.96 E-value=7.5e-30 Score=254.28 Aligned_cols=274 Identities=15% Similarity=0.145 Sum_probs=187.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~ 79 (446)
++||+|||||++|+++|..|++.|. +|+|||+++.++..... .++..+.
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~-----------------------------l~~~~~~ 54 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPP-----------------------------LSKAYLA 54 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGG-----------------------------GGTTTTT
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCC-----------------------------CcHHHhC
Confidence 5799999999999999999999998 79999997643210000 0000000
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV 159 (446)
- .... +++...+.++.++.+++ ++++++|+.+++.. ++|++.++. ++.||+||
T Consensus 55 ~-~~~~-----------------~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~---~~v~~~~g~----~~~~d~lv 107 (431)
T 1q1r_A 55 G-KATA-----------------ESLYLRTPDAYAAQNIQ--LLGGTQVTAINRDR---QQVILSDGR----ALDYDRLV 107 (431)
T ss_dssp T-CSCS-----------------GGGBSSCHHHHHHTTEE--EECSCCEEEEETTT---TEEEETTSC----EEECSEEE
T ss_pred C-CCCh-----------------HHhcccCHHHHHhCCCE--EEeCCEEEEEECCC---CEEEECCCC----EEECCEEE
Confidence 0 0000 00000112334567776 88899999998643 567765443 78999999
Q ss_pred EccCCCCCCccCCCCCCCCCCc-c-EEEeeecCCC-----CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc
Q 013303 160 VCNGHFSVPRLAQVPGIDSWPG-K-QMHSHNYRIP-----NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD 232 (446)
Q Consensus 160 vAtG~~s~p~~p~i~G~~~~~g-~-~~hs~~~~~~-----~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~ 232 (446)
+||| +.|+.|++||.+. .+ . +.+.....+. ....+++|+|||+|.+|+|+|..|++.|.+|+++.+.+..
T Consensus 108 iAtG--~~p~~~~i~G~~~-~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~ 184 (431)
T 1q1r_A 108 LATG--GRPRPLPVASGAV-GKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV 184 (431)
T ss_dssp ECCC--EEECCCGGGTTHH-HHSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred EcCC--CCccCCCCCCccc-CCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcc
Confidence 9999 7899999998752 22 1 3222211110 1135799999999999999999999999999999987641
Q ss_pred ------cc----c-ccCCCC-CCeeeccceeEEcc--C-C---cEEecCCcEEeecEEEEecCccCCCCCCCCC-----C
Q 013303 233 ------ET----H-EKQPGY-DNMWLHSMVERANE--D-G---TVVFRNGRVVSADVIMHCTGYKYNYPFLETN-----G 289 (446)
Q Consensus 233 ------~~----~-~~~~~~-~~v~~~~~v~~i~~--~-~---~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~-----g 289 (446)
.. + +.+.+. .++.....|.++.. + + .|.+.||+++++|.||+|+|++|+.+++... +
T Consensus 185 l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~ 264 (431)
T 1q1r_A 185 LERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVDN 264 (431)
T ss_dssp TTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBSS
T ss_pred ccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchhhccCCCCCC
Confidence 00 0 111111 24566678888875 2 3 3778899999999999999999998765322 2
Q ss_pred eeeeCCCCcccccccccCCCCCCCeEEecCCCccC-----------chhHHHHHHHHHHHHHcCCC
Q 013303 290 IVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-----------PFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 290 ~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-----------~~~~~~~qa~~~a~~l~g~~ 344 (446)
.|.+|+..+ ++.|+||++|++.... .++.+..||+.+|+++.|..
T Consensus 265 gi~Vd~~~~----------ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~ 320 (431)
T 1q1r_A 265 GIVINEHMQ----------TSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKV 320 (431)
T ss_dssp SEECCTTSB----------CSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTCC
T ss_pred CEEECCCcc----------cCCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhcCCC
Confidence 266666654 5589999999886432 24678999999999999864
No 78
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=99.95 E-value=1.9e-29 Score=252.10 Aligned_cols=262 Identities=19% Similarity=0.185 Sum_probs=177.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||||||++|..|++.|++|+|||+.+.+||.|.+. +
T Consensus 122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~g-----------------------------------i- 165 (456)
T 2vdc_G 122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYG-----------------------------------I- 165 (456)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHT-----------------------------------S-
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeec-----------------------------------C-
Confidence 4789999999999999999999999999999999999998763 0
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
+.|....++.++..+++++++++ +++++.|. ..+++++. .+.||+||+|
T Consensus 166 ---------------p~~~~~~~~~~~~~~~l~~~gv~--~~~~~~v~---------~~v~~~~~-----~~~~d~vvlA 214 (456)
T 2vdc_G 166 ---------------PGFKLEKSVVERRVKLLADAGVI--YHPNFEVG---------RDASLPEL-----RRKHVAVLVA 214 (456)
T ss_dssp ---------------CTTTSCHHHHHHHHHHHHHTTCE--EETTCCBT---------TTBCHHHH-----HSSCSEEEEC
T ss_pred ---------------CCccCCHHHHHHHHHHHHHCCcE--EEeCCEec---------cEEEhhHh-----HhhCCEEEEe
Confidence 01111156778888888888887 88887652 11222111 2469999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeec---------CC--------CCCCCCCEEEEEecCCcHHHHHHHHhccCC-EE
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY---------RI--------PNPFQDQVVILIGHYASGLDIKRDLAGFAK-EV 223 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~---------~~--------~~~~~~k~VvVVG~G~sg~eia~~l~~~~~-~V 223 (446)
||. ..|+.|.+||.+. .| +.+..+| .. ...+.+|+|+|||+|.+|+|+|..+.+.|. +|
T Consensus 215 tG~-~~~~~~~ipG~~~-~g-v~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~V 291 (456)
T 2vdc_G 215 TGV-YKARDIKAPGSGL-GN-IVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSV 291 (456)
T ss_dssp CCC-CEECCTTCSCCTT-TT-EEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEE
T ss_pred cCC-CCCCCCCCCCCcC-CC-cEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEE
Confidence 994 2477788999753 33 3332211 11 123679999999999999999999998876 69
Q ss_pred EEEEecCCc------cccccCCCCC-CeeeccceeEEccCCc---EEe------------------cCC--cEEeecEEE
Q 013303 224 HIASRSVAD------ETHEKQPGYD-NMWLHSMVERANEDGT---VVF------------------RNG--RVVSADVIM 273 (446)
Q Consensus 224 ~l~~r~~~~------~~~~~~~~~~-~v~~~~~v~~i~~~~~---v~~------------------~dG--~~~~~D~vi 273 (446)
+++.|++.. ..+..+.+.+ .+.....+.++..++. |.+ .+| .++++|.||
T Consensus 292 tiv~r~~~~~~p~~~~e~~~~~~~Gv~~~~~~~~~~i~~~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi 371 (456)
T 2vdc_G 292 KCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPEGFTGDTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVI 371 (456)
T ss_dssp EEECSSCSTTCSSCHHHHHHHHHTTCEEECCSSSCCEEEEEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEE
T ss_pred EEEEeCCccCCCCCHHHHHHHHHCCCEEEeCCCceEEeCCCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEE
Confidence 999987641 1111111111 3333444444433222 122 134 358899999
Q ss_pred EecCccCCCC--CCC-------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcC
Q 013303 274 HCTGYKYNYP--FLE-------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSG 342 (446)
Q Consensus 274 ~atG~~~~~~--~l~-------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g 342 (446)
+|+|+.|+.. ++. +.|.|.+|+. .+. ++.|+||++|++..+ .....+..||+.+|.++.+
T Consensus 372 ~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~--------~~~-Ts~~~VfA~GD~~~g~~~v~~A~~~G~~aA~~i~~ 441 (456)
T 2vdc_G 372 KALGFEPEDLPNAFDEPELKVTRWGTLLVDHR--------TKM-TNMDGVFAAGDIVRGASLVVWAIRDGRDAAEGIHA 441 (456)
T ss_dssp ECSCEECCCHHHHHHSTTSCBCTTSSBCCCTT--------TCB-CSSTTEEECGGGGSSCCSHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCcchhhcccCCeeECCCCCEEECCC--------CCc-CCCCCEEEeccccCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999864 443 3344555543 122 458999999998643 4467788899999988753
No 79
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=99.95 E-value=7.2e-29 Score=245.87 Aligned_cols=273 Identities=18% Similarity=0.123 Sum_probs=184.3
Q ss_pred CCeEEEECcChHHHHHHHHHHH---CCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLR---EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~---~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~ 78 (446)
|++|+|||||++|+++|..|++ .|++|+|||+++..+...... .
T Consensus 1 m~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~------------------------------~--- 47 (409)
T 3h8l_A 1 MTKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALP------------------------------H--- 47 (409)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSC------------------------------C---
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchh------------------------------h---
Confidence 4799999999999999999999 899999999987442211000 0
Q ss_pred ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (446)
Q Consensus 79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V 158 (446)
.. ......+++..++.+.++++++. +..+ +|+.++... ..|++.++.+...++.||+|
T Consensus 48 ----~~------------~~~~~~~~~~~~~~~~~~~~gv~--~~~~-~v~~i~~~~---~~V~~~~g~~~~~~~~~d~l 105 (409)
T 3h8l_A 48 ----VA------------IGVRDVDELKVDLSEALPEKGIQ--FQEG-TVEKIDAKS---SMVYYTKPDGSMAEEEYDYV 105 (409)
T ss_dssp ----CC------------SSCCCCCCEEEEHHHHTGGGTCE--EEEC-EEEEEETTT---TEEEEECTTSCEEEEECSEE
T ss_pred ----cc------------cCCcCHHHHHHHHHHHHhhCCeE--EEEe-eEEEEeCCC---CEEEEccCCcccceeeCCEE
Confidence 00 00001122334456666677887 6665 899988644 57777776655567999999
Q ss_pred EEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCC------CCEEEEEecC-------------------C------
Q 013303 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQ------DQVVILIGHY-------------------A------ 207 (446)
Q Consensus 159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~------~k~VvVVG~G-------------------~------ 207 (446)
|+||| +.|+.|.+||++. ...+.+.+.+...+. .++++|||+| .
T Consensus 106 ViAtG--~~~~~~~ipG~~~---~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~ 180 (409)
T 3h8l_A 106 IVGIG--AHLATELVKGWDK---YGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEG 180 (409)
T ss_dssp EECCC--CEECGGGSBTHHH---HCEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCH
T ss_pred EECCC--CCcCccCCCChhh---cCcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCCccccccccccCCCCcccCC
Confidence 99999 7899898999764 223333322221111 1567799999 2
Q ss_pred cHHHHHHHHh----ccC----CEEEEEEecCC----c----ccccc-CCCC-CCeeeccceeEEccCCcEEecCCcEEee
Q 013303 208 SGLDIKRDLA----GFA----KEVHIASRSVA----D----ETHEK-QPGY-DNMWLHSMVERANEDGTVVFRNGRVVSA 269 (446)
Q Consensus 208 sg~eia~~l~----~~~----~~V~l~~r~~~----~----~~~~~-~~~~-~~v~~~~~v~~i~~~~~v~~~dG~~~~~ 269 (446)
.|+|+|..++ +.| .+|+++.+.+. . +.+.+ +.+. .++.....|+++++++ |+++||+++++
T Consensus 181 ~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~-v~~~~g~~~~~ 259 (409)
T 3h8l_A 181 PVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIREHE-IVDEKGNTIPA 259 (409)
T ss_dssp HHHHHHHHHHHHHHTTTCTTTEEEEEECSSSSSTTBCHHHHHHHHHHHHHHTCEEECSCCEEEECSSE-EEETTSCEEEC
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEcCCceEEECCCe-EEECCCCEEee
Confidence 3778886544 556 48999988652 0 00111 1111 2455567899998765 99999999999
Q ss_pred cEEEEecCccCCC-------CCCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc---cCchhHHHHHHHHHHHH
Q 013303 270 DVIMHCTGYKYNY-------PFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK---VIPFPFFELQSKWIASV 339 (446)
Q Consensus 270 D~vi~atG~~~~~-------~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~---~~~~~~~~~qa~~~a~~ 339 (446)
|.||+|+|+.|+. ++.++.|.+.+|+..+ ..+.|+||++|++.. ......++.||+.+|++
T Consensus 260 D~vi~a~G~~~~~~l~~~~~~l~~~~G~i~vd~~~~---------~~~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~ 330 (409)
T 3h8l_A 260 DITILLPPYTGNPALKNSTPDLVDDGGFIPTDLNMV---------SIKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQH 330 (409)
T ss_dssp SEEEEECCEECCHHHHTSCGGGSCTTSCBCBBTTSB---------BSSCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCccHHHHhccccCcCCCCCEEeCcccc---------cCCCCCEEEeehhccCCCCcHHHHHHHHHHHHHHH
Confidence 9999999999872 2234455666666544 125899999998864 34457789999999999
Q ss_pred HcCCC
Q 013303 340 LSGRI 344 (446)
Q Consensus 340 l~g~~ 344 (446)
+.+.+
T Consensus 331 i~~~l 335 (409)
T 3h8l_A 331 LANRL 335 (409)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87544
No 80
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=99.95 E-value=2.4e-28 Score=244.43 Aligned_cols=261 Identities=17% Similarity=0.197 Sum_probs=179.7
Q ss_pred CCeEEEECcChHHHHHHHHHHH-C------CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLR-E------GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLP 74 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~-~------g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~ 74 (446)
+++|+||||||||+++|..|++ . |.+|+|||+.+.+||.|++. +.
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~g---------v~------------------- 54 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSG---------VA------------------- 54 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHT---------SC-------------------
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccc---------cC-------------------
Confidence 4799999999999999999999 7 99999999998899998762 11
Q ss_pred CCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEE
Q 013303 75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (446)
Q Consensus 75 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~ 154 (446)
+.++...++..++.++++++++. ++.++.| . . .|++.++ ++.
T Consensus 55 ----------------------p~~~~~~~~~~~~~~~~~~~~v~--~~~~v~v------~-~--~v~~~~~-----~~~ 96 (456)
T 1lqt_A 55 ----------------------PDHPKIKSISKQFEKTAEDPRFR--FFGNVVV------G-E--HVQPGEL-----SER 96 (456)
T ss_dssp ----------------------TTCTGGGGGHHHHHHHHTSTTEE--EEESCCB------T-T--TBCHHHH-----HHH
T ss_pred ----------------------CCCCCHHHHHHHHHHHHhcCCCE--EEeeEEE------C-C--EEEECCC-----eEe
Confidence 11222346677888888777665 5555332 1 1 1222221 367
Q ss_pred EcEEEEccCCCCC-CccCCCCCCCCCCccEEEeeec-----------CCCCCCCCCEEEEEecCCcHHHHHHHHhcc---
Q 013303 155 FDAVVVCNGHFSV-PRLAQVPGIDSWPGKQMHSHNY-----------RIPNPFQDQVVILIGHYASGLDIKRDLAGF--- 219 (446)
Q Consensus 155 ~d~VVvAtG~~s~-p~~p~i~G~~~~~g~~~hs~~~-----------~~~~~~~~k~VvVVG~G~sg~eia~~l~~~--- 219 (446)
||+||+||| +. |+.|++||.+ +.+ ++++.++ ++...+.+++|+|||+|++|+|+|..|++.
T Consensus 97 ~d~lViAtG--~~~~~~~~ipG~~-~~g-v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~ 172 (456)
T 1lqt_A 97 YDAVIYAVG--AQSDRMLNIPGED-LPG-SIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDV 172 (456)
T ss_dssp SSEEEECCC--CCEECCCCCTTTT-STT-EEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHH
T ss_pred CCEEEEeeC--CCCCCCCCCCCCC-CCC-cEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhh
Confidence 999999999 54 7888899986 444 5555443 333346789999999999999999999974
Q ss_pred -----------------C-CEEEEEEecCCcc------------------------cc----------------------
Q 013303 220 -----------------A-KEVHIASRSVADE------------------------TH---------------------- 235 (446)
Q Consensus 220 -----------------~-~~V~l~~r~~~~~------------------------~~---------------------- 235 (446)
+ ++|+++.|++... .+
T Consensus 173 l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (456)
T 1lqt_A 173 LARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVL 252 (456)
T ss_dssp HTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHH
T ss_pred hcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHH
Confidence 3 5999999876410 00
Q ss_pred cc-CCCC-----C--CeeeccceeEEccCCc---EEec----------------CC--cEEeecEEEEecCccCCC----
Q 013303 236 EK-QPGY-----D--NMWLHSMVERANEDGT---VVFR----------------NG--RVVSADVIMHCTGYKYNY---- 282 (446)
Q Consensus 236 ~~-~~~~-----~--~v~~~~~v~~i~~~~~---v~~~----------------dG--~~~~~D~vi~atG~~~~~---- 282 (446)
.+ +.+. . .+.....+.++..++. |.+. +| +++++|.||+|+||+|+.
T Consensus 253 ~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~l~gl 332 (456)
T 1lqt_A 253 RGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVPTPGL 332 (456)
T ss_dssp HHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCCCTTS
T ss_pred HHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCCCCCC
Confidence 00 0110 2 3344556777765543 6664 45 358899999999999985
Q ss_pred CCCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccCc--hhHHHHHHHHHHHHHcC
Q 013303 283 PFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIP--FPFFELQSKWIASVLSG 342 (446)
Q Consensus 283 ~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~--~~~~~~qa~~~a~~l~g 342 (446)
+ +++.+.+.+|+..+. ++.|+||++|++..++. ...+..||+.+|.++.+
T Consensus 333 ~-~d~~g~i~vn~~~rv---------t~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i~~ 384 (456)
T 1lqt_A 333 P-FDDQSGTIPNVGGRI---------NGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIK 384 (456)
T ss_dssp C-CBTTTTBCCEETTEE---------TTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHH
T ss_pred c-ccCCCCeeECCCCcC---------CCCCCEEEEeccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 2 233444555554431 24899999998864332 34678899999888764
No 81
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=99.94 E-value=7.2e-27 Score=253.30 Aligned_cols=280 Identities=16% Similarity=0.177 Sum_probs=196.3
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
+||+||||||||++||..|++.|++|+|||+++.+||+|.+.+ +.. +
T Consensus 129 ~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~-----------------------------k~~--i-- 175 (965)
T 2gag_A 129 TDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTA-----------------------------GEQ--I-- 175 (965)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSS-----------------------------CCE--E--
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCC-----------------------------ccc--c--
Confidence 6899999999999999999999999999999999999887310 000 0
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeC-------------CC
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKK-------------DD 148 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-------------~~ 148 (446)
... ...++...+.+...++ ++. ++.+++|..+.... ....+... .+
T Consensus 176 --------------~~~-~~~~~~~~~~~~l~~~~~v~--~~~~~~V~~i~~~~---~~~~v~~~~~~~~v~~~~~~~~~ 235 (965)
T 2gag_A 176 --------------DGM-DSSAWIEQVTSELAEAEETT--HLQRTTVFGSYDAN---YLIAAQRRTVHLDGPSGPGVSRE 235 (965)
T ss_dssp --------------TTE-EHHHHHHHHHHHHHHSTTEE--EESSEEEEEEETTT---EEEEEEECSTTCSSCCCTTCCSE
T ss_pred --------------CCC-CHHHHHHHHHHHHhhcCCcE--EEeCCEEEeeecCC---ceeeeEeecccccccccccCCCC
Confidence 000 1234445554545554 665 78899999886432 22111110 01
Q ss_pred ceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeec---C-CCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEE
Q 013303 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNY---R-IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVH 224 (446)
Q Consensus 149 ~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~---~-~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~ 224 (446)
...++.||+|||||| +.|+.|++||.+. +| ++++... . ......+++|+|||+|.+|+|+|..|++.|.+|+
T Consensus 236 ~~~~i~~d~lVlATG--s~p~~~~ipG~~~-~g-v~~~~~~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vt 311 (965)
T 2gag_A 236 RIWHIRAKQVVLATG--AHERPIVFENNDR-PG-IMLAGAVRSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVA 311 (965)
T ss_dssp EEEEEEEEEEEECCC--EEECCCCCBTCCS-TT-EEEHHHHHHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSE
T ss_pred ceEEEECCEEEECCC--CccCCCCCCCCCC-CC-EEEhHHHHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEE
Confidence 124689999999999 7899899999764 33 4444221 1 1233467999999999999999999999999999
Q ss_pred EEEecCCc-cccccCCCC-CCeeeccceeEEcc--CC---cEEecC-------C--cEEeecEEEEecCccCCCCCCCC-
Q 013303 225 IASRSVAD-ETHEKQPGY-DNMWLHSMVERANE--DG---TVVFRN-------G--RVVSADVIMHCTGYKYNYPFLET- 287 (446)
Q Consensus 225 l~~r~~~~-~~~~~~~~~-~~v~~~~~v~~i~~--~~---~v~~~d-------G--~~~~~D~vi~atG~~~~~~~l~~- 287 (446)
++++++.. .....+.+. .++.....|.++.. ++ .|++.+ | +++++|.||+|+|++|+..++..
T Consensus 312 vv~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~ 391 (965)
T 2gag_A 312 VIDARSSISAAAAQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR 391 (965)
T ss_dssp EEESCSSCCHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT
T ss_pred EEECCCccchhHHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhC
Confidence 99988651 001222222 26677778888876 33 377765 5 56899999999999999887753
Q ss_pred CCeeeeCCCCcccccccccCCCCCCCeEEecCCCccCchhHHHHHHHHHHHHHcCCC
Q 013303 288 NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 288 ~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~~~~~~~qa~~~a~~l~g~~ 344 (446)
.+.+.+|+.... ..+.++.|+||++|++.....+..+..||+.+|.++.+.+
T Consensus 392 ~g~i~vd~~~~~-----~v~~ts~p~IyAaGD~a~~~~l~~A~~~G~~aA~~i~~~l 443 (965)
T 2gag_A 392 QGKLDWDTTIHA-----FVPADAVANQHLAGAMTGRLDTASALSTGAATGAAAATAA 443 (965)
T ss_dssp TCCEEEETTTTE-----EEECSCCTTEEECGGGGTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred CCcEEEcCcccc-----cccCCCCCCEEEEEecCCchhHHHHHHHHHHHHHHHHHHc
Confidence 356778876531 1112458999999998766666678899999999987543
No 82
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=99.94 E-value=6.1e-28 Score=241.73 Aligned_cols=261 Identities=20% Similarity=0.260 Sum_probs=178.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~ 79 (446)
+++|+|||||++|+.+|..|++.| .+|+|||+.+.+||.|++. +.
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g---------~~------------------------ 52 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFG---------VA------------------------ 52 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHT---------SC------------------------
T ss_pred CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecc---------cC------------------------
Confidence 579999999999999999999998 9999999999999988762 11
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV 159 (446)
+.++...++..++.++++++++. +++++.|. . .|++.+ .++.||+||
T Consensus 53 -----------------p~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~-------~--~V~~~~-----~~~~~d~lV 99 (460)
T 1cjc_A 53 -----------------PDHPEVKNVINTFTQTARSDRCA--FYGNVEVG-------R--DVTVQE-----LQDAYHAVV 99 (460)
T ss_dssp -----------------TTCGGGGGHHHHHHHHHTSTTEE--EEBSCCBT-------T--TBCHHH-----HHHHSSEEE
T ss_pred -----------------CCCccHHHHHHHHHHHHHhCCcE--EEeeeEEe-------e--EEEecc-----ceEEcCEEE
Confidence 11122246678888888888776 77776551 1 122221 136799999
Q ss_pred EccCCCCCC-ccCCCCCCCCCCccEEEeeec----------CCC-CCCCCCEEEEEecCCcHHHHHHHHh----------
Q 013303 160 VCNGHFSVP-RLAQVPGIDSWPGKQMHSHNY----------RIP-NPFQDQVVILIGHYASGLDIKRDLA---------- 217 (446)
Q Consensus 160 vAtG~~s~p-~~p~i~G~~~~~g~~~hs~~~----------~~~-~~~~~k~VvVVG~G~sg~eia~~l~---------- 217 (446)
+||| +.| +.|++||.+ ..+ ++++..+ ... ..+.+++|+|||+|.+|+|+|..|+
T Consensus 100 lAtG--s~~~~~~~ipG~~-~~g-v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~td 175 (460)
T 1cjc_A 100 LSYG--AEDHQALDIPGEE-LPG-VFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTD 175 (460)
T ss_dssp ECCC--CCEECCCCCTTTT-STT-EEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSC
T ss_pred EecC--cCCCCCCCCCCCC-CCc-EEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhcccc
Confidence 9999 564 778999986 333 4444333 111 1347899999999999999999999
Q ss_pred ----------ccCC-EEEEEEecCCcc------c---c---c---------------------------------cC-CC
Q 013303 218 ----------GFAK-EVHIASRSVADE------T---H---E---------------------------------KQ-PG 240 (446)
Q Consensus 218 ----------~~~~-~V~l~~r~~~~~------~---~---~---------------------------------~~-~~ 240 (446)
+.+. +|+++.|++... . + . +. .+
T Consensus 176 i~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 255 (460)
T 1cjc_A 176 ITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATE 255 (460)
T ss_dssp CCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhhhhhccHHHHHHHHHHHHHHHh
Confidence 4555 799999876410 0 0 0 00 01
Q ss_pred --------------C-CCeeeccceeEEccC--C-c---EEec---------------CC--cEEeecEEEEecCccCCC
Q 013303 241 --------------Y-DNMWLHSMVERANED--G-T---VVFR---------------NG--RVVSADVIMHCTGYKYNY 282 (446)
Q Consensus 241 --------------~-~~v~~~~~v~~i~~~--~-~---v~~~---------------dG--~~~~~D~vi~atG~~~~~ 282 (446)
. -.+.....+.++..+ + . |.+. +| +++++|.||+|+|++|+.
T Consensus 256 ~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~ 335 (460)
T 1cjc_A 256 KPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP 335 (460)
T ss_dssp CCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCC
T ss_pred ccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCC
Confidence 1 133444566777654 3 2 5543 35 468999999999999985
Q ss_pred --CC--CCCCCeeeeCCCCcccccccccCCCC-CCCeEEecCCCccCc--hhHHHHHHHHHHHHHcC
Q 013303 283 --PF--LETNGIVTVDDNRVGPLYKHVFPPVL-APGLSFVGIPQKVIP--FPFFELQSKWIASVLSG 342 (446)
Q Consensus 283 --~~--l~~~g~i~~~~~~~~~l~~~~~~~~~-~p~l~~iG~~~~~~~--~~~~~~qa~~~a~~l~g 342 (446)
.+ +++.+.+.+|+..+ ++ .|+||++|++..++. ...+..||+.+|.++.+
T Consensus 336 l~gl~~~d~~g~i~vn~~~r----------t~~~p~vya~Gd~~~g~~~~i~~a~~~g~~aa~~i~~ 392 (460)
T 1cjc_A 336 IDPSVPFDPKLGVVPNMEGR----------VVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQ 392 (460)
T ss_dssp CCTTSCCBTTTTBCCEETTE----------ETTCTTEEECTHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccccCCCeeECCCCc----------CcCCCCEEEEEeCCcCCCccHHHHHHHHHHHHHHHHH
Confidence 11 23334465665554 33 599999998874333 34678899999888764
No 83
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=99.94 E-value=3.1e-28 Score=256.18 Aligned_cols=258 Identities=17% Similarity=0.135 Sum_probs=190.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
++||+|||||+|||++|..|++.|++|+|||+++.+||.|.....
T Consensus 391 ~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~----------------------------------- 435 (690)
T 3k30_A 391 DARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESA----------------------------------- 435 (690)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHT-----------------------------------
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccC-----------------------------------
Confidence 479999999999999999999999999999999999999875210
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv 160 (446)
.+.+....++.+|+...++++ +++ ++++++|.. .+. .++.||+||+
T Consensus 436 --------------~p~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~-------------~~~----~~~~~d~lvl 482 (690)
T 3k30_A 436 --------------LPGLSAWGRVKEYREAVLAELPNVE--IYRESPMTG-------------DDI----VEFGFEHVIT 482 (690)
T ss_dssp --------------STTCGGGGHHHHHHHHHHHTCTTEE--EESSCCCCH-------------HHH----HHTTCCEEEE
T ss_pred --------------CCchhHHHHHHHHHHHHHHHcCCCE--EEECCeecH-------------HHH----hhcCCCEEEE
Confidence 111122357888998888887 666 666654321 111 2467999999
Q ss_pred ccCCCCC------CccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEe--cCCcHHHHHHHHhccCCEEEEEEecCCc
Q 013303 161 CNGHFSV------PRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIG--HYASGLDIKRDLAGFAKEVHIASRSVAD 232 (446)
Q Consensus 161 AtG~~s~------p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG--~G~sg~eia~~l~~~~~~V~l~~r~~~~ 232 (446)
|||.... |..|.+||.+. ..++++.++.......+++|+||| +|.+|+|+|..|++.+.+|+++.+.+..
T Consensus 483 AtG~~~~~~~~~~~~~~~i~G~~~--~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l 560 (690)
T 3k30_A 483 ATGATWRTDGVARFHTTALPIAEG--MQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQV 560 (690)
T ss_dssp CCCEEECSSCCSSSCSSCCCBCTT--SEEECHHHHHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred cCCCccccccccccCCCCCCCCCC--CcEEcHHHHhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccc
Confidence 9994322 56788888764 456676666665666789999999 9999999999999999999999987641
Q ss_pred ------c----c-cccCCCC-CCeeeccceeEEccCCcEEec-----CCcEEeecEEEEecCccCCCCCCCCCCeeeeCC
Q 013303 233 ------E----T-HEKQPGY-DNMWLHSMVERANEDGTVVFR-----NGRVVSADVIMHCTGYKYNYPFLETNGIVTVDD 295 (446)
Q Consensus 233 ------~----~-~~~~~~~-~~v~~~~~v~~i~~~~~v~~~-----dG~~~~~D~vi~atG~~~~~~~l~~~g~i~~~~ 295 (446)
. . .+.+.+. .++..+..|.++..++ +.+. +++++++|.||+|||++|+..++.+.+ ...+
T Consensus 561 ~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~-~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l~-~~~~- 637 (690)
T 3k30_A 561 SSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGG-VTVRDTYASIERELECDAVVMVTARLPREELYLDLV-ARRD- 637 (690)
T ss_dssp TGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEETTE-EEEEETTTCCEEEEECSEEEEESCEEECCHHHHHHH-HHHH-
T ss_pred ccccccchhHHHHHHHHHHCCCEEEcCcEEEEEECCe-EEEEEccCCeEEEEECCEEEECCCCCCChHHHHHHh-hhhc-
Confidence 0 0 1111122 2566677899997655 4432 456789999999999999987654311 0000
Q ss_pred CCcccccccccCCCCCCCeEEecCCCccCchhHHHHHHHHHHHHHcCCC
Q 013303 296 NRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 296 ~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~~~~~~~qa~~~a~~l~g~~ 344 (446)
. ++.|+||++|++........+..||+.+|.++.+.+
T Consensus 638 -----------~-t~~~~VyaiGD~~~~~~~~~A~~~g~~aa~~i~~~l 674 (690)
T 3k30_A 638 -----------A-GEIASVRGIGDAWAPGTIAAAVWSGRRAAEEFDAVL 674 (690)
T ss_dssp -----------H-TSCSEEEECGGGTSCBCHHHHHHHHHHHHHHTTCCC
T ss_pred -----------c-cCCCCEEEEeCCCchhhHHHHHHHHHHHHHHHHhhc
Confidence 1 448999999998877777778999999999998874
No 84
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=99.94 E-value=6.7e-28 Score=254.68 Aligned_cols=269 Identities=14% Similarity=0.124 Sum_probs=184.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.+||+|||||+|||+||..|++.|++|+|||+++.+||.|.+...
T Consensus 389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~----------------------------------- 433 (729)
T 1o94_A 389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAA----------------------------------- 433 (729)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTT-----------------------------------
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeeccc-----------------------------------
Confidence 479999999999999999999999999999999999999886310
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
+ +.++....+.+|+...++.+. ..+..+..+.. ...|+++++ .++.||+||+|
T Consensus 434 -~-------------pg~~~~~~~~~~~~~~i~~~~-----~~~~~~v~i~~----~~~v~~~~~----~~~~~d~vviA 486 (729)
T 1o94_A 434 -L-------------PGLGEWSYHRDYRETQITKLL-----KKNKESQLALG----QKPMTADDV----LQYGADKVIIA 486 (729)
T ss_dssp -S-------------TTCGGGHHHHHHHHHHHHHHH-----HHSTTCEEECS----CCCCCHHHH----HTSCCSEEEEC
T ss_pred -C-------------CChHHHHHHHHHHHHHHHHhh-----cccCCceEEEe----CeEEehhhc----cccCCCEEEEc
Confidence 0 011112456667766666541 00111112211 112222221 14679999999
Q ss_pred cCCCCC------CccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEe--cCCcHHHHHHHHhccCCEEEEEEecCCc-
Q 013303 162 NGHFSV------PRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIG--HYASGLDIKRDLAGFAKEVHIASRSVAD- 232 (446)
Q Consensus 162 tG~~s~------p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG--~G~sg~eia~~l~~~~~~V~l~~r~~~~- 232 (446)
||.... |+.|++||.+.+...++++.++.......+++|+||| +|.+|+|+|..|++.|.+|+++.+.+..
T Consensus 487 tG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~l~~ 566 (729)
T 1o94_A 487 TGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLAN 566 (729)
T ss_dssp CCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTH
T ss_pred CCCCcccccccCccCCCCCCccccCCCEEEHHHHhcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEecccccc
Confidence 994321 6788899987655567776666555556789999999 9999999999999999999999987620
Q ss_pred --------ccc-ccCCCCC-CeeeccceeEEccCCcEEe----cCC-cE------------------EeecEEEEecCcc
Q 013303 233 --------ETH-EKQPGYD-NMWLHSMVERANEDGTVVF----RNG-RV------------------VSADVIMHCTGYK 279 (446)
Q Consensus 233 --------~~~-~~~~~~~-~v~~~~~v~~i~~~~~v~~----~dG-~~------------------~~~D~vi~atG~~ 279 (446)
..+ +.+.+.+ ++.....|.++..++ +.+ .++ ++ +++|.||+|+|++
T Consensus 567 ~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~ 645 (729)
T 1o94_A 567 YMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGR-MEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRH 645 (729)
T ss_dssp HHHHTTCHHHHHHHHHHTTCEEECSEEEEEEETTE-EEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEE
T ss_pred cccccccHHHHHHHHHhCCCEEEcCcEEEEEECCe-EEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCC
Confidence 011 1111222 455667788887654 443 243 32 8999999999999
Q ss_pred CCCCCCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccCchhHHHHHHHHHHHHHcCCC
Q 013303 280 YNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 280 ~~~~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~~~~~~~qa~~~a~~l~g~~ 344 (446)
|+..++...+ ..+|+..+ ++.|+||++|++........+..||+.+|.++.+.+
T Consensus 646 p~~~l~~~l~-~~vd~~~~----------t~~~~VyAiGD~~~~~~~~~A~~~G~~aA~~i~~~l 699 (729)
T 1o94_A 646 SECTLWNELK-ARESEWAE----------NDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEAN 699 (729)
T ss_dssp ECCHHHHHHH-HTGGGTGG----------GTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CChHHHHHHh-hhcccccc----------cCCCCeEEEeCccchhhHHHHHHHHHHHHHHhhhhc
Confidence 9987664211 12233322 447999999998766667778999999999998753
No 85
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=99.94 E-value=1.3e-27 Score=238.85 Aligned_cols=269 Identities=13% Similarity=0.167 Sum_probs=182.4
Q ss_pred CCeEEEECcChHHHHHHHHHHH---CCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLR---EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~---~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~ 78 (446)
++||+|||||++|+++|..|++ .|++|+|||+++.. .+.+ .+.
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~----~~~~-------------------~~~----------- 49 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF----QFVP-------------------SNP----------- 49 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE----ECGG-------------------GHH-----------
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC----cccC-------------------Ccc-----------
Confidence 5799999999999999999999 79999999997632 1100 000
Q ss_pred ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (446)
Q Consensus 79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V 158 (446)
+. .......+++...+.+++++.+++ +. ..+|+.+++.. .+|++.++. ++.||+|
T Consensus 50 ------~~---------~~g~~~~~~~~~~l~~~~~~~gv~--~~-~~~v~~id~~~---~~V~~~~g~----~i~~d~l 104 (437)
T 3sx6_A 50 ------WV---------GVGWKERDDIAFPIRHYVERKGIH--FI-AQSAEQIDAEA---QNITLADGN----TVHYDYL 104 (437)
T ss_dssp ------HH---------HHTSSCHHHHEEECHHHHHTTTCE--EE-CSCEEEEETTT---TEEEETTSC----EEECSEE
T ss_pred ------cc---------ccCccCHHHHHHHHHHHHHHCCCE--EE-EeEEEEEEcCC---CEEEECCCC----EEECCEE
Confidence 00 001123356666677788888887 54 57999998654 467665543 7899999
Q ss_pred EEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCC--------CCCCEEEEEecCCcH------HHHHHHHh----ccC
Q 013303 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNP--------FQDQVVILIGHYASG------LDIKRDLA----GFA 220 (446)
Q Consensus 159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~--------~~~k~VvVVG~G~sg------~eia~~l~----~~~ 220 (446)
|+||| +.|+.|.+||++.+.+...+.+.+.+... +.+++++|||+|++| +|+|..++ +.+
T Consensus 105 viAtG--~~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g 182 (437)
T 3sx6_A 105 MIATG--PKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRG 182 (437)
T ss_dssp EECCC--CEECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTT
T ss_pred EECCC--CCcCcccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcC
Confidence 99999 88999999998765444433332222111 124567899997654 88885554 455
Q ss_pred CE-----EEEEEecCCc------------ccc-ccCCCC-CCeeeccceeEEccCCcEEecC---------CcEEeecEE
Q 013303 221 KE-----VHIASRSVAD------------ETH-EKQPGY-DNMWLHSMVERANEDGTVVFRN---------GRVVSADVI 272 (446)
Q Consensus 221 ~~-----V~l~~r~~~~------------~~~-~~~~~~-~~v~~~~~v~~i~~~~~v~~~d---------G~~~~~D~v 272 (446)
.+ |+++++.+.. ..+ +.+.+. -++..+..|.++++++ +.+++ ++++++|.|
T Consensus 183 ~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~~~~~~~v~~v~~~~-v~~~~~~~~g~~~~~~~i~~D~v 261 (437)
T 3sx6_A 183 MRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVEDNK-MYVTQVDEKGETIKEMVLPVKFG 261 (437)
T ss_dssp CGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCEEECSEEEEEEETTE-EEEEEECTTSCEEEEEEEECSEE
T ss_pred CcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCEEEcCCEEEEEECCe-EEEEecccCCccccceEEEEeEE
Confidence 43 9999987631 001 111111 2455667899997654 66654 667899999
Q ss_pred EEecCccCCCC------CCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-------------chhHHHHHH
Q 013303 273 MHCTGYKYNYP------FLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-------------PFPFFELQS 333 (446)
Q Consensus 273 i~atG~~~~~~------~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-------------~~~~~~~qa 333 (446)
++|+|+.++.+ .+++.|.|.+|+..+. .++|+||++|++.... ....+..||
T Consensus 262 v~~~g~~~~~~~~~~~gl~~~~G~i~Vd~~l~t---------~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg 332 (437)
T 3sx6_A 262 MMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRS---------KKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMV 332 (437)
T ss_dssp EEECCEECCHHHHTSTTTBCTTSCBCBCTTSBB---------SSCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHH
T ss_pred EEcCCCcCchhhhccccccCCCCcEEeChhccC---------CCCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHH
Confidence 99999987632 3455677777776552 2589999999886432 345788999
Q ss_pred HHHHHHHc
Q 013303 334 KWIASVLS 341 (446)
Q Consensus 334 ~~~a~~l~ 341 (446)
+.+|+++.
T Consensus 333 ~~aA~ni~ 340 (437)
T 3sx6_A 333 SAAVHNIK 340 (437)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998876
No 86
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=99.94 E-value=5.1e-28 Score=244.96 Aligned_cols=297 Identities=14% Similarity=0.136 Sum_probs=182.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~ 79 (446)
.+||+|||||+||++||..|++. |.+|+|||+++.++... +.+++.++...... . ...+.
T Consensus 11 ~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r------------~~lsk~l~~~~~~~-----~-~~~~~ 72 (493)
T 1m6i_A 11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMR------------PPLSKELWFSDDPN-----V-TKTLR 72 (493)
T ss_dssp EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCS------------GGGGTGGGCC--CT-----H-HHHCE
T ss_pred cCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCC------------CCCCHHhhcCCccc-----h-hhccc
Confidence 36899999999999999999887 78999999987654110 11111111111000 0 00011
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV 159 (446)
|.+++.....- .......|....++.+ ..+.+++ ++++++|+.|+... ++|++.++. ++.||+||
T Consensus 73 ~~~~~~~~~~~-~~~~~~~~~~~~~l~~-----~~~~gv~--~~~g~~v~~id~~~---~~V~~~~g~----~i~yd~lv 137 (493)
T 1m6i_A 73 FKQWNGKERSI-YFQPPSFYVSAQDLPH-----IENGGVA--VLTGKKVVQLDVRD---NMVKLNDGS----QITYEKCL 137 (493)
T ss_dssp EECTTSCEEES-BSSCGGGSBCTTTTTT-----STTCEEE--EEETCCEEEEEGGG---TEEEETTSC----EEEEEEEE
T ss_pred ccccccccccc-cccchHhhcchhhhhh-----hhcCCeE--EEcCCEEEEEECCC---CEEEECCCC----EEECCEEE
Confidence 11111100000 0000001111111100 1233554 77889999998754 677776543 78999999
Q ss_pred EccCCCCCCccCCCCCCCC--CCccEEEeeecCCCC-----CCCCCEEEEEecCCcHHHHHHHHhc----cCCEEEEEEe
Q 013303 160 VCNGHFSVPRLAQVPGIDS--WPGKQMHSHNYRIPN-----PFQDQVVILIGHYASGLDIKRDLAG----FAKEVHIASR 228 (446)
Q Consensus 160 vAtG~~s~p~~p~i~G~~~--~~g~~~hs~~~~~~~-----~~~~k~VvVVG~G~sg~eia~~l~~----~~~~V~l~~r 228 (446)
+||| +.|+.|+++|... +...+.+.....+.. ...+++|+|||+|.+|+|+|..|++ .+.+|+++.+
T Consensus 138 iATG--s~p~~~~~~~~~~~~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~ 215 (493)
T 1m6i_A 138 IATG--GTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFP 215 (493)
T ss_dssp ECCC--EEECCCHHHHTSCHHHHHTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECS
T ss_pred ECCC--CCCCCCCCcccccccccCceEEEcCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEec
Confidence 9999 7888776655321 111222211111100 1247999999999999999999987 4678999987
Q ss_pred cCC------cc----cc-ccCCCCC-CeeeccceeEEccCC---cEEecCCcEEeecEEEEecCccCCCCCCCC------
Q 013303 229 SVA------DE----TH-EKQPGYD-NMWLHSMVERANEDG---TVVFRNGRVVSADVIMHCTGYKYNYPFLET------ 287 (446)
Q Consensus 229 ~~~------~~----~~-~~~~~~~-~v~~~~~v~~i~~~~---~v~~~dG~~~~~D~vi~atG~~~~~~~l~~------ 287 (446)
.+. +. .+ +.+.+.+ ++..+..|.++..++ .|.+.||+++++|.||+|+|+.|+.+++..
T Consensus 216 ~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~ 295 (493)
T 1m6i_A 216 EKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEID 295 (493)
T ss_dssp SSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTTHHHHTCCBC
T ss_pred CcccccccCCHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHHHHHcCCccc
Confidence 642 00 11 1112222 556677888886432 277889999999999999999999887532
Q ss_pred --CCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC----------chhHHHHHHHHHHHHHcCCC
Q 013303 288 --NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI----------PFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 288 --~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~----------~~~~~~~qa~~~a~~l~g~~ 344 (446)
.|.|.+|+.++ + .|+||++|++.... .++.+..||+.+|+++.|..
T Consensus 296 ~~~ggi~Vd~~l~----------t-~~~IyA~GD~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g~~ 353 (493)
T 1m6i_A 296 SDFGGFRVNAELQ----------A-RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAA 353 (493)
T ss_dssp TTTCSEECCTTCE----------E-ETTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCC
T ss_pred cCCCcEEECCCcc----------c-CCCeeEeeeeEeccCcccCccccchHHHHHHHHHHHHHHhcCCC
Confidence 24566776654 4 58999999886321 23478999999999999863
No 87
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=99.94 E-value=5.3e-27 Score=237.30 Aligned_cols=278 Identities=13% Similarity=0.186 Sum_probs=177.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
+++|||||||+||+++|+.|++.+++|+|||+++.. .+. .+........+.
T Consensus 42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~----~~~-----------------------PlL~~va~G~l~-- 92 (502)
T 4g6h_A 42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYF----LFT-----------------------PLLPSAPVGTVD-- 92 (502)
T ss_dssp SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEE----ECG-----------------------GGGGGTTTTSSC--
T ss_pred CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCc----ccc-----------------------cchhHHhhcccc--
Confidence 468999999999999999999999999999997521 111 010000000000
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEE-eCeEEEEEEEcCCCceEEEEEeC--------------
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVR-LHTEVLNARLVESNKWKVKSRKK-------------- 146 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~-~~~~V~~v~~~~~~~~~v~~~~~-------------- 146 (446)
..++...+..+.....-. +. ...+|++|++.. .+|++...
T Consensus 93 --------------------~~~i~~p~~~~~~~~~~~--v~~~~~~v~~ID~~~---k~V~l~~~~~~~~~~~~~~~~~ 147 (502)
T 4g6h_A 93 --------------------EKSIIEPIVNFALKKKGN--VTYYEAEATSINPDR---NTVTIKSLSAVSQLYQPENHLG 147 (502)
T ss_dssp --------------------GGGGEEEHHHHHTTCSSC--EEEEEEEEEEEEGGG---TEEEEEEEEEEEECSSSCCCCC
T ss_pred --------------------HHHhhhhHHHHHHhhcCC--eEEEEEEEEEEEhhh---CEEEEeecccceeecccccccc
Confidence 011111122222111111 22 356889998755 44544321
Q ss_pred --CCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecC--------------------CC--CCCCCCEEEE
Q 013303 147 --DDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR--------------------IP--NPFQDQVVIL 202 (446)
Q Consensus 147 --~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~--------------------~~--~~~~~k~VvV 202 (446)
.++..++.||+|||||| +.|+.|.+||.++. .+...... .. +.-...+++|
T Consensus 148 ~~~~~~~~i~YD~LViAtG--s~~~~~~ipG~~e~---a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvV 222 (502)
T 4g6h_A 148 LHQAEPAEIKYDYLISAVG--AEPNTFGIPGVTDY---GHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVV 222 (502)
T ss_dssp CCTTCCEEEECSEEEECCC--CEECCTTCTTHHHH---CEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEE
T ss_pred cccCCceEEeCCEEEEcCC--cccccCCccCcccc---cCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEE
Confidence 12345799999999999 89999999997542 11111000 00 0011258999
Q ss_pred EecCCcHHHHHHHHhccC--------------CEEEEEEecCC-----cccc-----ccCCCCC-CeeeccceeEEccCC
Q 013303 203 IGHYASGLDIKRDLAGFA--------------KEVHIASRSVA-----DETH-----EKQPGYD-NMWLHSMVERANEDG 257 (446)
Q Consensus 203 VG~G~sg~eia~~l~~~~--------------~~V~l~~r~~~-----~~~~-----~~~~~~~-~v~~~~~v~~i~~~~ 257 (446)
||+|++|+|+|.+|++.+ .+|+++.+.+. ++.+ +.+.+.+ ++.++..|.++++++
T Consensus 223 vGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~~ 302 (502)
T 4g6h_A 223 VGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQ 302 (502)
T ss_dssp ECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEETTEEEEEECSSE
T ss_pred ECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccCCCHHHHHHHHHHHHhcceeeecCceEEEEeCCc
Confidence 999999999999998643 57999998775 1111 1112222 567788899997765
Q ss_pred c---EEecCCc----EEeecEEEEecCccCCC---------CC-CCCCCeeeeCCCCcccccccccCCCCCCCeEEecCC
Q 013303 258 T---VVFRNGR----VVSADVIMHCTGYKYNY---------PF-LETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIP 320 (446)
Q Consensus 258 ~---v~~~dG~----~~~~D~vi~atG~~~~~---------~~-l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~ 320 (446)
. ..+.||+ ++++|.||+|+|.+|+. +. .+..|.|.||+.++. .++|+||++|++
T Consensus 303 ~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~~~~g~I~Vd~~lq~---------~~~~~IfAiGD~ 373 (502)
T 4g6h_A 303 LLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVNDFLQV---------KGSNNIFAIGDN 373 (502)
T ss_dssp EEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHHHHHSGGGTTCCSSEEBCTTSBB---------TTCSSEEECGGG
T ss_pred eEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhHHHhccccccCCCceeECCcccc---------CCCCCEEEEEcc
Confidence 2 2235664 58899999999999871 11 244577999988763 358999999998
Q ss_pred Ccc---CchhHHHHHHHHHHHHHcCCCCCC
Q 013303 321 QKV---IPFPFFELQSKWIASVLSGRIVLP 347 (446)
Q Consensus 321 ~~~---~~~~~~~~qa~~~a~~l~g~~~lp 347 (446)
... ...+.+..||+++|++|.+....|
T Consensus 374 a~~~~p~~a~~A~qqg~~~A~ni~~~~~~~ 403 (502)
T 4g6h_A 374 AFAGLPPTAQVAHQEAEYLAKNFDKMAQIP 403 (502)
T ss_dssp EESSSCCCHHHHHHHHHHHHHHHHHHTTCH
T ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHhccc
Confidence 633 345678899999999997765544
No 88
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=99.93 E-value=1.3e-26 Score=243.35 Aligned_cols=244 Identities=22% Similarity=0.339 Sum_probs=177.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
++||+|||||+||+++|..|++.|++|+|||+++.+||.|.....
T Consensus 373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~----------------------------------- 417 (671)
T 1ps9_A 373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQ----------------------------------- 417 (671)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTT-----------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeecccc-----------------------------------
Confidence 479999999999999999999999999999999999998875310
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEE-EEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE-TFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~-~~d~VVv 160 (446)
+| ......++.+++...+++++++ +++++.|.. . .+ .||+||+
T Consensus 418 -~~-------------~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~----------------~----~~~~~d~lvi 461 (671)
T 1ps9_A 418 -IP-------------GKEEFYETLRYYRRMIEVTGVT--LKLNHTVTA----------------D----QLQAFDETIL 461 (671)
T ss_dssp -ST-------------TCTTHHHHHHHHHHHHHHHTCE--EEESCCCCS----------------S----SSCCSSEEEE
T ss_pred -CC-------------CHHHHHHHHHHHHHHHHHcCCE--EEeCcEecH----------------H----HhhcCCEEEE
Confidence 00 0011245667788888888887 777765431 0 13 7999999
Q ss_pred ccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCC-------------------
Q 013303 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK------------------- 221 (446)
Q Consensus 161 AtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~------------------- 221 (446)
||| +.|+.|.+||.+. ..++++.++.....+.+++|+|||+|.+|+|+|..|++.|.
T Consensus 462 AtG--~~p~~~~i~G~~~--~~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~ 537 (671)
T 1ps9_A 462 ASG--IVPRTPPIDGIDH--PKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSL 537 (671)
T ss_dssp CCC--EEECCCCCBTTTS--TTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTC
T ss_pred ccC--CCcCCCCCCCCCC--CcEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccc
Confidence 999 7999999999865 34666666555555678999999999999999999998764
Q ss_pred ------------------EEEEEEecCC--cccc---------ccCCCC-CCeeeccceeEEccCCcEEe-cCC--cEEe
Q 013303 222 ------------------EVHIASRSVA--DETH---------EKQPGY-DNMWLHSMVERANEDGTVVF-RNG--RVVS 268 (446)
Q Consensus 222 ------------------~V~l~~r~~~--~~~~---------~~~~~~-~~v~~~~~v~~i~~~~~v~~-~dG--~~~~ 268 (446)
+|+++.+.+. ...+ ..+.+. .++.....|+++.+++ +.+ .+| ++++
T Consensus 538 ~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~-v~~~~~G~~~~i~ 616 (671)
T 1ps9_A 538 QQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDG-LHVVINGETQVLA 616 (671)
T ss_dssp CSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTE-EEEEETTEEEEEC
T ss_pred cccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEeCCe-EEEecCCeEEEEe
Confidence 4555555432 0000 111111 2455566788887654 666 688 5689
Q ss_pred ecEEEEecCccCCCCCCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccCc--hhHHHHHHHHHHHHH
Q 013303 269 ADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIP--FPFFELQSKWIASVL 340 (446)
Q Consensus 269 ~D~vi~atG~~~~~~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~--~~~~~~qa~~~a~~l 340 (446)
+|.||+|+|++|+..++.. + +. . .+++|++|++..... ...+..||..+|.+|
T Consensus 617 ~D~Vi~a~G~~p~~~l~~~---l--~~-------------~-g~~v~aiGD~~~~~~~~~~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 617 VDNVVICAGQEPNRALAQP---L--ID-------------S-GKTVHLIGGCDVAMELDARRAIAQGTRLALEI 671 (671)
T ss_dssp CSEEEECCCEEECCTTHHH---H--HT-------------T-TCCEEECGGGTCCSSCCHHHHHHHHHHHHHHC
T ss_pred CCEEEECCCccccHHHHHH---H--Hh-------------c-CCCEEEECCcCccCchhHHHHHHHHHHHHHhC
Confidence 9999999999999877642 1 00 1 468999998865443 567888999998864
No 89
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=99.92 E-value=1.1e-25 Score=245.71 Aligned_cols=263 Identities=18% Similarity=0.189 Sum_probs=174.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~ 80 (446)
.+||+||||||||++||..|++.|+ +|+|||+.+.+||.+.+.-
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~i----------------------------------- 231 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEI----------------------------------- 231 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTS-----------------------------------
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccC-----------------------------------
Confidence 3689999999999999999999999 7999999999999876520
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv 160 (446)
+.|....++.++..++.+++|++ +++++.|.. +.|++.++ .++.||+|||
T Consensus 232 ----------------p~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~--------~~v~~~~~----~~~~~d~vvl 281 (1025)
T 1gte_A 232 ----------------PQFRLPYDVVNFEIELMKDLGVK--IICGKSLSE--------NEITLNTL----KEEGYKAAFI 281 (1025)
T ss_dssp ----------------CTTTSCHHHHHHHHHHHHTTTCE--EEESCCBST--------TSBCHHHH----HHTTCCEEEE
T ss_pred ----------------CcccCCHHHHHHHHHHHHHCCcE--EEcccEecc--------ceEEhhhc----CccCCCEEEE
Confidence 01111145667777888888887 777776521 12222221 1357999999
Q ss_pred ccCCCCCCccCCC-CCCCCCCccEEEeeecC--------------C-CCCCCCCEEEEEecCCcHHHHHHHHhccCC-EE
Q 013303 161 CNGHFSVPRLAQV-PGIDSWPGKQMHSHNYR--------------I-PNPFQDQVVILIGHYASGLDIKRDLAGFAK-EV 223 (446)
Q Consensus 161 AtG~~s~p~~p~i-~G~~~~~g~~~hs~~~~--------------~-~~~~~~k~VvVVG~G~sg~eia~~l~~~~~-~V 223 (446)
|||. ..|+.+++ +|++...+ ++++.++. . .....+++|+|||+|.+|+|+|..+++.|. +|
T Consensus 282 AtGa-~~p~~l~~~~G~~~~~g-v~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~V 359 (1025)
T 1gte_A 282 GIGL-PEPKTDDIFQGLTQDQG-FYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRV 359 (1025)
T ss_dssp CCCC-CEECCCGGGTTCCTTTT-EEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEE
T ss_pred ecCC-CCCCCCCCCCCCCCCCC-EEEhHHHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEE
Confidence 9993 15766554 56643323 44433321 1 112346799999999999999999999985 89
Q ss_pred EEEEecCC------ccccccCCCCC-CeeeccceeEEcc-CCc---EEec------CC---------cEEeecEEEEecC
Q 013303 224 HIASRSVA------DETHEKQPGYD-NMWLHSMVERANE-DGT---VVFR------NG---------RVVSADVIMHCTG 277 (446)
Q Consensus 224 ~l~~r~~~------~~~~~~~~~~~-~v~~~~~v~~i~~-~~~---v~~~------dG---------~~~~~D~vi~atG 277 (446)
++++|++. +..+..+.+.+ .+.....+.++.. ++. |++. +| .++++|.||+|+|
T Consensus 360 tvv~r~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G 439 (1025)
T 1gte_A 360 FLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFG 439 (1025)
T ss_dssp EEECSSCGGGCCSCHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSC
T ss_pred EEEEecChhhCCCCHHHHHHHHHcCCEEEeCCCceEEEccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCC
Confidence 99998763 11111111112 3334445556543 232 3332 22 3588999999999
Q ss_pred ccCC-CCCC--------CCCCeeeeCC-CCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHc
Q 013303 278 YKYN-YPFL--------ETNGIVTVDD-NRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLS 341 (446)
Q Consensus 278 ~~~~-~~~l--------~~~g~i~~~~-~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~ 341 (446)
+.|+ ..++ ++.|.|.+|+ ..+ ++.|+||++|++.. ......+..||+.+|+++.
T Consensus 440 ~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~----------Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~i~ 504 (1025)
T 1gte_A 440 SVLRDPKVKEALSPIKFNRWDLPEVDPETMQ----------TSEPWVFAGGDIVGMANTTVESVNDGKQASWYIH 504 (1025)
T ss_dssp EECCCHHHHHHTTTSCBCTTSSBCCCTTTCB----------CSSTTEEECSGGGCSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCchhhhhcccCceECCCCCEEECCCCCc----------cCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 9874 2232 2345566664 333 55899999999875 3345677889999999886
No 90
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=99.91 E-value=1.2e-24 Score=220.13 Aligned_cols=265 Identities=18% Similarity=0.193 Sum_probs=177.1
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
+||+|||||++|+++|..|++. ++|+|||+++.+||.|.... .. .++
T Consensus 109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~------------------~~-----------~~g--- 155 (493)
T 1y56_A 109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKG------------------IK-----------QEG--- 155 (493)
T ss_dssp ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTC------------------SE-----------ETT---
T ss_pred CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccc------------------cc-----------cCC---
Confidence 5899999999999999999999 99999999999999887521 00 000
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt 162 (446)
++. ...++...+.+.. ..++. ++++++|.++.... ..+.+...+ .++...+.||+||+||
T Consensus 156 ~~~---------------~~~~~~~~l~~~l-~~~v~--~~~~~~v~~i~~~~-~~~~~~~~~-~~~~~~~~~d~lvlAt 215 (493)
T 1y56_A 156 FNK---------------DSRKVVEELVGKL-NENTK--IYLETSALGVFDKG-EYFLVPVVR-GDKLIEILAKRVVLAT 215 (493)
T ss_dssp TTE---------------EHHHHHHHHHHTC-CTTEE--EETTEEECCCEECS-SSEEEEEEE-TTEEEEEEESCEEECC
T ss_pred CCC---------------CHHHHHHHHHHHH-hcCCE--EEcCCEEEEEEcCC-cEEEEEEec-CCeEEEEECCEEEECC
Confidence 000 1234444333322 33444 77899999998765 556655433 2333478999999999
Q ss_pred CCCCCCccCCCCCCCCCCccEEEeeecC----CCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCccccccC
Q 013303 163 GHFSVPRLAQVPGIDSWPGKQMHSHNYR----IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQ 238 (446)
Q Consensus 163 G~~s~p~~p~i~G~~~~~g~~~hs~~~~----~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~~~~~ 238 (446)
| +.|+.|.+||.+. ++ +++..++. ......+++++|||+|.+|+| ..+.+.|.+
T Consensus 216 G--a~~~~~~~~g~~~-~g-v~~~~~~~~~~~~~~~~~~~~vvViGgG~~gle--~~l~~~GV~---------------- 273 (493)
T 1y56_A 216 G--AIDSTMLFENNDM-PG-VFRRDFALEVMNVWEVAPGRKVAVTGSKADEVI--QELERWGID---------------- 273 (493)
T ss_dssp C--EEECCCCCTTTTS-TT-EEEHHHHHHHHHTSCBCSCSEEEEESTTHHHHH--HHHHHHTCE----------------
T ss_pred C--CCccCCCCCCCCC-CC-EEEcHHHHHHHHhcccCCCCEEEEECCCHHHHH--HHHHhCCcE----------------
Confidence 9 7899999999763 33 44433221 112346799999999999999 334444433
Q ss_pred CCCCCeeeccceeEEccCCc---EEecCCcEEeecEEEEecCccCCCCCCCCCCe-eeeCCCCcccccccccCCCCCCCe
Q 013303 239 PGYDNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGYKYNYPFLETNGI-VTVDDNRVGPLYKHVFPPVLAPGL 314 (446)
Q Consensus 239 ~~~~~v~~~~~v~~i~~~~~---v~~~dG~~~~~D~vi~atG~~~~~~~l~~~g~-i~~~~~~~~~l~~~~~~~~~~p~l 314 (446)
+.....|.++..++. +.+.||+++++|.||+|+|+.|+..++...|. +..++....+..+..+. +.|+|
T Consensus 274 -----v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~~~~--s~~~v 346 (493)
T 1y56_A 274 -----YVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLDEYHR--IKDGI 346 (493)
T ss_dssp -----EEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEEETTEEEECCCTTSE--EETTE
T ss_pred -----EEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccccCCceeeccccccC--cCCCE
Confidence 333445556654332 66788999999999999999999877543331 11122111111111112 37999
Q ss_pred EEecCCCccCchhHHHHHHHHHHHHHcCCCCCCCH
Q 013303 315 SFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQ 349 (446)
Q Consensus 315 ~~iG~~~~~~~~~~~~~qa~~~a~~l~g~~~lp~~ 349 (446)
|++|++........+..||+.+|.++.+.+.+...
T Consensus 347 ya~GD~~~~~~~~~A~~~g~~aa~~i~~~lg~~~~ 381 (493)
T 1y56_A 347 YVAGSAVSIKPHYANYLEGKLVGAYILKEFGYDAQ 381 (493)
T ss_dssp EECSTTTCCCCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred EEEeccCCccCHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999887667778899999999999887655443
No 91
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=99.91 E-value=4.6e-26 Score=227.10 Aligned_cols=266 Identities=12% Similarity=0.105 Sum_probs=167.1
Q ss_pred CCCeEEEECcChHHHHHHHHHHH--CCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLR--EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~ 78 (446)
|++||+|||||++|+++|..|++ .|++|+|||+++..++..... .+ .....
T Consensus 1 M~~~vvIIGgG~aGl~aA~~L~~~~~g~~Vtlie~~~~~~~~~~~~-----------------------~~----~~g~~ 53 (430)
T 3h28_A 1 MAKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFP-----------------------HL----AMGWR 53 (430)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHH-----------------------HH----HHTCS
T ss_pred CCCCEEEECccHHHHHHHHHHHcCCCCCeEEEECCCCCCCcCCCcc-----------------------hh----ccCcc
Confidence 67899999999999999999999 789999999987654321100 00 00000
Q ss_pred ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (446)
Q Consensus 79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V 158 (446)
..+++...+.+++++.+++ +.. .+|+.+++.. .+|++.++. ++.||+|
T Consensus 54 ----------------------~~~~~~~~~~~~~~~~gv~--~~~-~~v~~id~~~---~~v~~~~g~----~i~~d~l 101 (430)
T 3h28_A 54 ----------------------KFEDISVPLAPLLPKFNIE--FIN-EKAESIDPDA---NTVTTQSGK----KIEYDYL 101 (430)
T ss_dssp ----------------------CGGGSEEESTTTGGGGTEE--EEC-SCEEEEETTT---TEEEETTCC----EEECSEE
T ss_pred ----------------------CHHHHHHHHHHHHHhcCCE--EEE-EEEEEEECCC---CEEEECCCc----EEECCEE
Confidence 0011111122334445665 544 5888887643 366665443 6899999
Q ss_pred EEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCC--------CCCCEEEEEecCCcH------HHHHHHHh----ccC
Q 013303 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNP--------FQDQVVILIGHYASG------LDIKRDLA----GFA 220 (446)
Q Consensus 159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~--------~~~k~VvVVG~G~sg------~eia~~l~----~~~ 220 (446)
|+||| +.|..| |+.. .+...+...+.+... +++++++|||+|++| +|+|..++ +.+
T Consensus 102 iiAtG--~~~~~p---g~~~-~g~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~~~~G~~~E~a~~la~~l~~~g 175 (430)
T 3h28_A 102 VIATG--PKLVFG---AEGQ-EENSTSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRG 175 (430)
T ss_dssp EECCC--CEEECC---SBTH-HHHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTT
T ss_pred EEcCC--cccccC---CCCC-cCCccCcCCHHHHHHHHHHHHHHHhcCCeEEEEcCCCCCcCcHHHHHHHHHHHHHHHcC
Confidence 99999 777665 4321 111111111111100 124567899998765 88886554 444
Q ss_pred ----CEEEEEEecCCc------------ccc-ccCCCC-CCeeeccceeEEccCCcEEecC----CcEEeecEEEEecCc
Q 013303 221 ----KEVHIASRSVAD------------ETH-EKQPGY-DNMWLHSMVERANEDGTVVFRN----GRVVSADVIMHCTGY 278 (446)
Q Consensus 221 ----~~V~l~~r~~~~------------~~~-~~~~~~-~~v~~~~~v~~i~~~~~v~~~d----G~~~~~D~vi~atG~ 278 (446)
.+|+++.+.+.. ..+ +.+.+. .++..+..|++++.++ +++++ |+++++|.||+|+|+
T Consensus 176 ~~~~~~V~~v~~~~~~~~~~l~~~~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-v~~~~~~~~g~~i~~D~vv~a~G~ 254 (430)
T 3h28_A 176 IRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEPDK-VIYEDLNGNTHEVPAKFTMFMPSF 254 (430)
T ss_dssp CGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECSSE-EEEECTTSCEEEEECSEEEEECEE
T ss_pred CccceEEEEecCCccccccccCcchHHHHHHHHHHHHCCCEEEeCCEEEEEeCCe-EEEEecCCCceEEeeeEEEECCCC
Confidence 479999876531 011 111111 2556677899997654 88887 788999999999999
Q ss_pred cCCC-------CCCCCCC-eeeeCCCCcccccccccCCCCCCCeEEecCCCccC-------------chhHHHHHHHHHH
Q 013303 279 KYNY-------PFLETNG-IVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-------------PFPFFELQSKWIA 337 (446)
Q Consensus 279 ~~~~-------~~l~~~g-~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-------------~~~~~~~qa~~~a 337 (446)
.++. ..+++.| .|.+|+..+. .++|+||++|++.... ....+..||+.+|
T Consensus 255 ~~~~~l~~~~~gl~~~~G~~i~Vd~~l~t---------~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~~g~~aa 325 (430)
T 3h28_A 255 QGPEVVASAGDKVANPANKMVIVNRCFQN---------PTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVA 325 (430)
T ss_dssp ECCHHHHTTCTTTBCTTTCCBCCCTTSBC---------SSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHH
T ss_pred ccchhHhhccccCcCCCCCEEecCccccC---------CCCCCEEEEEeeeccCCccCCCCCCCCCchHHHHHHHHHHHH
Confidence 8752 2334556 6777766552 2589999999986432 3567889999999
Q ss_pred HHHc
Q 013303 338 SVLS 341 (446)
Q Consensus 338 ~~l~ 341 (446)
+++.
T Consensus 326 ~ni~ 329 (430)
T 3h28_A 326 HNIV 329 (430)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 92
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=99.90 E-value=3.7e-23 Score=204.22 Aligned_cols=270 Identities=18% Similarity=0.133 Sum_probs=164.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~ 79 (446)
.|+|+|||||+||+++|..|++.+ .+|+|||+++... +.+ .+.. .....
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~----~~p-------------------~~~~----v~~g~-- 52 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYY----TCY-------------------MSNE----VIGGD-- 52 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEE----CST-------------------THHH----HHHTS--
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCC----Ccc-------------------CHHH----HhcCC--
Confidence 489999999999999999999876 5899999976321 100 0000 00000
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV 159 (446)
.+.. ++..-+.. ....+++ + ...+|+.|++.. .+|++.++. ++.||+||
T Consensus 53 ---~~~~-----------------~~~~~~~~-~~~~gv~--~-i~~~v~~id~~~---~~v~~~~g~----~i~yd~Lv 101 (401)
T 3vrd_B 53 ---RELA-----------------SLRVGYDG-LRAHGIQ--V-VHDSALGIDPDK---KLVKTAGGA----EFAYDRCV 101 (401)
T ss_dssp ---SCGG-----------------GGEECSHH-HHHTTCE--E-ECSCEEEEETTT---TEEEETTSC----EEECSEEE
T ss_pred ---CCHH-----------------HHhhCHHH-HHHCCCE--E-EEeEEEEEEccC---cEEEecccc----eeecceee
Confidence 0000 00000111 2234665 3 356899998754 566666654 79999999
Q ss_pred EccCCCCCCccCCCCCCCCCCc-cEEEeeecCC--------CCCCCCCEEEEEecCC-------cHHHHHHHH----hcc
Q 013303 160 VCNGHFSVPRLAQVPGIDSWPG-KQMHSHNYRI--------PNPFQDQVVILIGHYA-------SGLDIKRDL----AGF 219 (446)
Q Consensus 160 vAtG~~s~p~~p~i~G~~~~~g-~~~hs~~~~~--------~~~~~~k~VvVVG~G~-------sg~eia~~l----~~~ 219 (446)
+||| +.++.|.+||.+...+ ...|+..... ...+.....+|+++|. .+.|++.++ .+.
T Consensus 102 iAtG--~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~ 179 (401)
T 3vrd_B 102 VAPG--IDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAH 179 (401)
T ss_dssp ECCC--EEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHH
T ss_pred eccC--CccccCCccCchhhcccCccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhc
Confidence 9999 8999999999875322 1222211100 0112233444444332 344444444 333
Q ss_pred --CCEEEEEEecCCc-----------cccccCCCCC--CeeeccceeEEccC---CcEEecCCcEEeecEEEEecCccCC
Q 013303 220 --AKEVHIASRSVAD-----------ETHEKQPGYD--NMWLHSMVERANED---GTVVFRNGRVVSADVIMHCTGYKYN 281 (446)
Q Consensus 220 --~~~V~l~~r~~~~-----------~~~~~~~~~~--~v~~~~~v~~i~~~---~~v~~~dG~~~~~D~vi~atG~~~~ 281 (446)
..+|+++.+.+.. ..+....+.. ++.....+..++.+ ..+.+.||+++++|.|++++|.+++
T Consensus 180 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vi~~~g~~~~ 259 (401)
T 3vrd_B 180 KSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVINLIPPQRAG 259 (401)
T ss_dssp CTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred CCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccceEEEcCCCcEEEeeEEEEecCcCCc
Confidence 4689998876641 1112222222 44555666666533 2388999999999999999999986
Q ss_pred -----CCCCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC----chhHHHHHHHHHHHHHc
Q 013303 282 -----YPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI----PFPFFELQSKWIASVLS 341 (446)
Q Consensus 282 -----~~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~----~~~~~~~qa~~~a~~l~ 341 (446)
....++.|+|.+|+.. +..+++||||++|++.... ....+..||+++|++|.
T Consensus 260 ~~~~~~gl~~~~G~i~VD~~t--------l~~t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni~ 320 (401)
T 3vrd_B 260 KIAQSASLTNDSGWCPVDIRT--------FESSLQPGIHVIGDACNAAPMPKSAYSANSQAKVAAAAVV 320 (401)
T ss_dssp HHHHHTTCCCTTSSBCBCTTT--------CBBSSSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEECCCc--------ceecCCCCEEEecccccCCCCCchHHHHHHHHHHHHHHHH
Confidence 2334566777777652 1125589999999976432 34677899999999875
No 93
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=99.88 E-value=7.2e-24 Score=211.03 Aligned_cols=268 Identities=14% Similarity=0.139 Sum_probs=155.6
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~ 78 (446)
|.|+|+|||||+||+++|+.|++.+ ++|+|||+++.. .+.+ .+ .......+
T Consensus 1 M~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~----~~~p-------------------~l----~~v~~g~~ 53 (430)
T 3hyw_A 1 MAKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYF----GFTP-------------------AF----PHLAMGWR 53 (430)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEE----ECGG-------------------GH----HHHHHTCS
T ss_pred CCCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCC----ccCc-------------------cH----HHHhcCCC
Confidence 7789999999999999999999865 799999997632 1110 00 00000000
Q ss_pred ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (446)
Q Consensus 79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V 158 (446)
...+. ...+.++.++.+++ +. ..+|++|++.. .+|+++++. ++.||+|
T Consensus 54 ~~~~i----------------------~~~~~~~~~~~gv~--~i-~~~v~~Id~~~---~~V~~~~g~----~i~YD~L 101 (430)
T 3hyw_A 54 KFEDI----------------------SVPLAPLLPKFNIE--FI-NEKAESIDPDA---NTVTTQSGK----KIEYDYL 101 (430)
T ss_dssp CGGGS----------------------EEESTTTGGGGTEE--EE-CSCEEEEETTT---TEEEETTCC----EEECSEE
T ss_pred CHHHh----------------------hhcHHHHHHHCCcE--EE-EeEEEEEECCC---CEEEECCCC----EEECCEE
Confidence 00000 00111223344554 43 45899998754 677776654 7999999
Q ss_pred EEccCCCCCCccCCCCCCCCCCccEEEee---ecCC-CC-CCCCCEEEEEecCC------cHHHHHHHH----hccC---
Q 013303 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSH---NYRI-PN-PFQDQVVILIGHYA------SGLDIKRDL----AGFA--- 220 (446)
Q Consensus 159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~---~~~~-~~-~~~~k~VvVVG~G~------sg~eia~~l----~~~~--- 220 (446)
||||| +.+. +++||.+...-.+.... ..+. .. ...++.++|+|++. .+.|++..+ .+.+
T Consensus 102 ViAtG--~~~~-~~i~G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~ 178 (430)
T 3hyw_A 102 VIATG--PKLV-FGAEGQEENSTSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRY 178 (430)
T ss_dssp EECCC--CEEE-CCSBTHHHHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGG
T ss_pred EEeCC--CCcc-CCccCcccCcCCcccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccc
Confidence 99999 5554 46788653110000000 0000 00 11244566666653 223444433 2333
Q ss_pred -CEEEEEEecCCc------------cccccC-CCC-CCeeeccceeEEccCCcEEecC--C--cEEeecEEEEecCccCC
Q 013303 221 -KEVHIASRSVAD------------ETHEKQ-PGY-DNMWLHSMVERANEDGTVVFRN--G--RVVSADVIMHCTGYKYN 281 (446)
Q Consensus 221 -~~V~l~~r~~~~------------~~~~~~-~~~-~~v~~~~~v~~i~~~~~v~~~d--G--~~~~~D~vi~atG~~~~ 281 (446)
.+|+++...+.. ..+.++ .+. -++..+..|++++.++ +.+++ | +++++|.+|+|+|.+++
T Consensus 179 ~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~~~-~~~~~~~g~~~~i~~d~vi~~~G~~~~ 257 (430)
T 3hyw_A 179 KVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEPDK-VIYEDLNGNTHEVPAKFTMFMPSFQGP 257 (430)
T ss_dssp GCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECSSE-EEEECTTSCEEEEECSEEEEECEEECC
T ss_pred cceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEeCCc-eEEEeeCCCceEeecceEEEeccCCCc
Confidence 367777655431 011111 111 2566778899997654 66654 3 46899999999999987
Q ss_pred CCCC---------CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-------------chhHHHHHHHHHHHH
Q 013303 282 YPFL---------ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-------------PFPFFELQSKWIASV 339 (446)
Q Consensus 282 ~~~l---------~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-------------~~~~~~~qa~~~a~~ 339 (446)
+++ +..|.+.+|+.++. +++||||++|++...+ ....+..||+++|++
T Consensus 258 -~~~~~~~~~l~~~~~g~i~vd~~lq~---------t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~N 327 (430)
T 3hyw_A 258 -EVVASAGDKVANPANKMVIVNRCFQN---------PTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHN 327 (430)
T ss_dssp -HHHHTTCTTTBCTTTCCBCCCTTSBC---------SSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHH
T ss_pred -hHHHhcccccccCCceEEEecccccC---------CCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHH
Confidence 222 12344666665542 4589999999886432 234788999999999
Q ss_pred Hc
Q 013303 340 LS 341 (446)
Q Consensus 340 l~ 341 (446)
|.
T Consensus 328 i~ 329 (430)
T 3hyw_A 328 IV 329 (430)
T ss_dssp HH
T ss_pred HH
Confidence 85
No 94
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.3e-19 Score=170.07 Aligned_cols=150 Identities=13% Similarity=0.116 Sum_probs=107.5
Q ss_pred CeEEEECcChHHHHHHHHHHH--CCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303 3 RHVAVIGAGAAGLVVGHELLR--EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~ 80 (446)
+||+|||||||||+||.+|++ .|++|+|||+.+.+||.+.+. ++.+++. .
T Consensus 66 ~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~--------~~~~~~~-----------------~--- 117 (326)
T 3fpz_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLG--------GQLFSAM-----------------V--- 117 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCC--------STTCCCE-----------------E---
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeC--------CccCCHH-----------------H---
Confidence 699999999999999999975 599999999999999987653 1111100 0
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv 160 (446)
+.+.+..++++++++ +..+.. .....+.+++
T Consensus 118 ------------------------l~~~~~~~~~e~Gv~--~~~~~~-----------------------~~~~~~~~~~ 148 (326)
T 3fpz_A 118 ------------------------MRKPAHLFLQELEIP--YEDEGD-----------------------YVVVKHAALF 148 (326)
T ss_dssp ------------------------EETTTHHHHHHTTCC--CEECSS-----------------------EEEESCHHHH
T ss_pred ------------------------HHHHHHHHHHHcCCE--EEECCc-----------------------ceecceeEEE
Confidence 000122334556765 332211 1233445566
Q ss_pred ccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 161 AtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
+++ ..++.+.++|.+.+.+........++...+.+++++|||+|.++++.|..+...+.++++..+...
T Consensus 149 ~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viggg~~av~~a~~~~~~~~~v~i~~~~~~ 217 (326)
T 3fpz_A 149 IST--VLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCAMDPNVIELAGYK 217 (326)
T ss_dssp HHH--HHHHHHTSTTEEEETTEEEEEEEEESSCSSSSCEEEEEEEEEHHHHTCTTSSSCCCCEEEEESCBC
T ss_pred Ecc--hhhhccccccceeecccccceeeccCCcccCCCEEEEEccCceeeehhhhhhhccCcEEEEeeccc
Confidence 777 677888889988777766666666666777899999999999999999999999999999887654
No 95
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=99.59 E-value=7.4e-15 Score=127.86 Aligned_cols=112 Identities=27% Similarity=0.419 Sum_probs=82.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
++||+|||||++|+.+|..|++.|.+|+|+|+.+.. +... ..+..++
T Consensus 1 ~~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~---~~~~------------------------------~~~~~~~ 47 (180)
T 2ywl_A 1 MWDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSK---VKGV------------------------------SRVPNYP 47 (180)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCT---TTTC------------------------------SCCCCST
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCc---ccCc------------------------------hhhhccC
Confidence 479999999999999999999999999999997622 1000 0000011
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.+ +......++.+++.+.+++.+++ ++++ +|++++..+ +.|.|++.++ ++.+|.||+|
T Consensus 48 ~~-------------~~~~~~~~~~~~l~~~~~~~gv~--v~~~-~v~~i~~~~-~~~~v~~~~g-----~i~ad~vI~A 105 (180)
T 2ywl_A 48 GL-------------LDEPSGEELLRRLEAHARRYGAE--VRPG-VVKGVRDMG-GVFEVETEEG-----VEKAERLLLC 105 (180)
T ss_dssp TC-------------TTCCCHHHHHHHHHHHHHHTTCE--EEEC-CCCEEEECS-SSEEEECSSC-----EEEEEEEEEC
T ss_pred CC-------------cCCCCHHHHHHHHHHHHHHcCCE--EEeC-EEEEEEEcC-CEEEEEECCC-----EEEECEEEEC
Confidence 11 11234688999999999999987 8889 999998866 5677766432 6899999999
Q ss_pred cCCCCCCcc
Q 013303 162 NGHFSVPRL 170 (446)
Q Consensus 162 tG~~s~p~~ 170 (446)
+| ..|++
T Consensus 106 ~G--~~~~~ 112 (180)
T 2ywl_A 106 TH--KDPTL 112 (180)
T ss_dssp CT--TCCHH
T ss_pred CC--CCCCc
Confidence 99 55544
No 96
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=99.54 E-value=4.9e-15 Score=145.51 Aligned_cols=204 Identities=17% Similarity=0.331 Sum_probs=118.1
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCC--CCCCCCCCCCCccCCc-c-CceeecCCCCCc
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES--DPLGVDPNRYPVHSSL-Y-KSLRVNLPRELM 78 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~--~~~g~~p~~~~~~~~~-y-~~l~~~~~~~~~ 78 (446)
+||+|||||++|+++|..|++.|.+|+|||+.+.+|+.|........ ...++.|.+.+..... . ..+....+...+
T Consensus 5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (401)
T 2gqf_A 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI 84 (401)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence 69999999999999999999999999999999888665432211000 0001111100000000 0 000000000000
Q ss_pred cc---CCCCCCcCCCCCCCCCCCCC--CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEc----CCCceEEEEEeCCCc
Q 013303 79 GF---QAYPFVARNYEGSVDLRRYP--GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV----ESNKWKVKSRKKDDV 149 (446)
Q Consensus 79 ~~---~d~~~~~~~~~~~~~~~~~~--~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~----~~~~~~v~~~~~~~~ 149 (446)
.+ ...++... .....|| ...++.+++.+.+++.|++ ++++++|+++... + +.|.|++.++
T Consensus 85 ~~~~~~Gi~~~~~-----~~g~~~p~~~~~~l~~~L~~~~~~~Gv~--i~~~~~v~~i~~~~~g~~-~~~~v~~~~g--- 153 (401)
T 2gqf_A 85 SLVAEQGITYHEK-----ELGQLFCDEGAEQIVEMLKSECDKYGAK--ILLRSEVSQVERIQNDEK-VRFVLQVNST--- 153 (401)
T ss_dssp HHHHHTTCCEEEC-----STTEEEETTCTHHHHHHHHHHHHHHTCE--EECSCCEEEEEECCSCSS-CCEEEEETTE---
T ss_pred HHHHhCCCceEEC-----cCCEEccCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEcccCcCC-CeEEEEECCC---
Confidence 00 01111110 0112233 6688999999999999987 9999999999876 4 5677765321
Q ss_pred eEEEEEcEEEEccCCCCCCc------------------cCCCCCCCCCCccEEEeee-cCCCCCCCC----CEEEEEe--
Q 013303 150 VEEETFDAVVVCNGHFSVPR------------------LAQVPGIDSWPGKQMHSHN-YRIPNPFQD----QVVILIG-- 204 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s~p~------------------~p~i~G~~~~~g~~~hs~~-~~~~~~~~~----k~VvVVG-- 204 (446)
++.+|.||+|||.++.|. .|..|++..|. +++.. +. ..+.+ .+++|+|
T Consensus 154 --~i~ad~VVlAtG~~s~p~~g~~G~g~~la~~~G~~i~~~~p~l~~~~---~~~~~~~~--~~l~g~~~~~~~~i~G~~ 226 (401)
T 2gqf_A 154 --QWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRASLVPFT---YRETDKFL--TALSGISLPVTITALCGK 226 (401)
T ss_dssp --EEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEESCCEE---CCGGGGGG--GGGTTCEEEEEEEETTSC
T ss_pred --EEECCEEEECCCCccCCCCCCChHHHHHHHHCCCCcccCcceeecee---cCCchhhc--ccCCCeeeeeEEEEcCCc
Confidence 689999999999777554 24444443321 11211 10 11222 3455558
Q ss_pred -------------cCCcHHHHHHHHhccCCEEEE
Q 013303 205 -------------HYASGLDIKRDLAGFAKEVHI 225 (446)
Q Consensus 205 -------------~G~sg~eia~~l~~~~~~V~l 225 (446)
+|+.+++++..+.. +.+|++
T Consensus 227 ~~~g~~l~t~~g~sG~~~l~~s~~~~~-~~~~~i 259 (401)
T 2gqf_A 227 SFYNQLLFTHRGISGPAVLQISNYWQP-TESVEI 259 (401)
T ss_dssp EEEEEEEECSSEEESHHHHHHTTTCCT-TCCEEE
T ss_pred eEEeCEEEECCCccHHHHHHHHHHHhc-CCEEEE
Confidence 89999999988866 556665
No 97
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=99.39 E-value=1.9e-12 Score=127.52 Aligned_cols=156 Identities=19% Similarity=0.330 Sum_probs=92.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCC--CCCCCCCCCCcc--CCccCceeecCCCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESD--PLGVDPNRYPVH--SSLYKSLRVNLPREL 77 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~--~~g~~p~~~~~~--~~~y~~l~~~~~~~~ 77 (446)
.+||+|||||++|+++|..|++.|.+|+|||+.+.+|+.+......... ...+.+...... ...+..+....+...
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQDF 106 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHHH
Confidence 3699999999999999999999999999999999887654322110000 000000000000 000000000000000
Q ss_pred ccc---CCCCCCcCCCCCCCCCCCC--CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEE
Q 013303 78 MGF---QAYPFVARNYEGSVDLRRY--PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (446)
Q Consensus 78 ~~~---~d~~~~~~~~~~~~~~~~~--~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~ 152 (446)
+.+ ...++... .....| ....++.+.|.+.+++.|+. ++++++|+++...+ +.|.|.+.++ +
T Consensus 107 ~~~~~~~Gi~~~~~-----~~g~~~~~~~~~~l~~~L~~~l~~~Gv~--i~~~~~V~~i~~~~-~~~~V~~~~g-----~ 173 (417)
T 3v76_A 107 VALVERHGIGWHEK-----TLGQLFCDHSAKDIIRMLMAEMKEAGVQ--LRLETSIGEVERTA-SGFRVTTSAG-----T 173 (417)
T ss_dssp HHHHHHTTCCEEEC-----STTEEEESSCHHHHHHHHHHHHHHHTCE--EECSCCEEEEEEET-TEEEEEETTE-----E
T ss_pred HHHHHHcCCCcEEe-----eCCEEeeCCCHHHHHHHHHHHHHHCCCE--EEECCEEEEEEEeC-CEEEEEECCc-----E
Confidence 000 01111110 001122 24678999999999999988 99999999998876 6677776432 6
Q ss_pred EEEcEEEEccCCCCCCcc
Q 013303 153 ETFDAVVVCNGHFSVPRL 170 (446)
Q Consensus 153 ~~~d~VVvAtG~~s~p~~ 170 (446)
+.+|.||+|||.++.|..
T Consensus 174 i~ad~VIlAtG~~S~p~~ 191 (417)
T 3v76_A 174 VDAASLVVASGGKSIPKM 191 (417)
T ss_dssp EEESEEEECCCCSSCGGG
T ss_pred EEeeEEEECCCCccCCCC
Confidence 899999999998776543
No 98
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=99.37 E-value=2.2e-12 Score=126.50 Aligned_cols=153 Identities=18% Similarity=0.192 Sum_probs=95.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCC---CCCCCCCCCCCCccCCccCceeecCCCCC-
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE---SDPLGVDPNRYPVHSSLYKSLRVNLPREL- 77 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~---~~~~g~~p~~~~~~~~~y~~l~~~~~~~~- 77 (446)
.+||+|||||++|+++|..|++.|++|+|+|+.+.+|+......... .+..|..+.... ....+..+....+...
T Consensus 4 ~~dVvIvG~G~aGl~~A~~La~~G~~V~l~E~~~~~g~~~~~~~~~~~~~~~~lg~~~~~~~-~~~~~~~~~~~~~~~~~ 82 (397)
T 3cgv_A 4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSF-IANEVKGARIYGPSEKR 82 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTT-EEEEESEEEEECTTCSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCcccccccCHHHHHHcCCCCChHH-hhhhcceEEEEcCCCCE
Confidence 36999999999999999999999999999999887765332211000 001111111000 0011122222111111
Q ss_pred -cccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEeCCCceEEEEE
Q 013303 78 -MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETF 155 (446)
Q Consensus 78 -~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~~~~~~~~~~~ 155 (446)
..+. .... ........++..+.++|.+.+++.|+. ++++++|+++...+ +.++ |++.+. ++..++.+
T Consensus 83 ~~~~~---~~~~----~~~~~~~~~~~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~~~-~~v~gv~~~~~-~~~~~~~a 151 (397)
T 3cgv_A 83 PIILQ---SEKA----GNEVGYVLERDKFDKHLAALAAKAGAD--VWVKSPALGVIKEN-GKVAGAKIRHN-NEIVDVRA 151 (397)
T ss_dssp CEEEC------------CCCEEEECHHHHHHHHHHHHHHHTCE--EESSCCEEEEEEET-TEEEEEEEEET-TEEEEEEE
T ss_pred EEEEe---cccc----CCceeEEEeHHHHHHHHHHHHHhCCCE--EEECCEEEEEEEeC-CEEEEEEEEEC-CeEEEEEc
Confidence 1111 0000 001123357789999999999999988 99999999998875 7776 777553 23457999
Q ss_pred cEEEEccCCCC
Q 013303 156 DAVVVCNGHFS 166 (446)
Q Consensus 156 d~VVvAtG~~s 166 (446)
|.||.|+|.++
T Consensus 152 ~~vV~A~G~~s 162 (397)
T 3cgv_A 152 KMVIAADGFES 162 (397)
T ss_dssp EEEEECCCTTC
T ss_pred CEEEECCCcch
Confidence 99999999765
No 99
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=99.36 E-value=2.8e-13 Score=135.97 Aligned_cols=314 Identities=16% Similarity=0.115 Sum_probs=153.4
Q ss_pred eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCC--CCCCCCCCCCCc---cCCcc-------Cceee
Q 013303 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES--DPLGVDPNRYPV---HSSLY-------KSLRV 71 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~--~~~g~~p~~~~~---~~~~y-------~~l~~ 71 (446)
||+|||||++|+++|..|++.|.+|+|+|+. ..||.-......-. ...++.|...+. ....+ ..+..
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~ 79 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTS 79 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence 7999999999999999999999999999998 55554221110000 000111100000 00000 00000
Q ss_pred cCCCCC--cccCCCCCCcCC-CCCCCC-CC----CCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCce-EEE
Q 013303 72 NLPREL--MGFQAYPFVARN-YEGSVD-LR----RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVK 142 (446)
Q Consensus 72 ~~~~~~--~~~~d~~~~~~~-~~~~~~-~~----~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~-~v~ 142 (446)
+.+... +.-...+|.... ...... .. .-.++.++.+.|.+.+++.+++ +.++++| ++...+ +.. -+.
T Consensus 80 ~~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~--i~~~~~v-~l~~~~-~~v~Gv~ 155 (472)
T 2e5v_A 80 EAKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIP--IIEDRLV-EIRVKD-GKVTGFV 155 (472)
T ss_dssp HHHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCC--EECCCEE-EEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCE--EEECcEE-EEEEeC-CEEEEEE
Confidence 000000 000011221100 000000 00 0124568888888888888988 9999999 987654 432 123
Q ss_pred EEeCCCceEEEEEcEEEEccCCCCCCccCCCC-CCCCCCccEEEee-----ecCCCCCCCCC-EEEEEecCCcHHHHHHH
Q 013303 143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVP-GIDSWPGKQMHSH-----NYRIPNPFQDQ-VVILIGHYASGLDIKRD 215 (446)
Q Consensus 143 ~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~-G~~~~~g~~~hs~-----~~~~~~~~~~k-~VvVVG~G~sg~eia~~ 215 (446)
+.+.+ .++.+|.||+|||. .+.++.++ +.....|..+... ...+.+.+... +++++|+| +++++..
T Consensus 156 v~~~~---g~~~a~~VVlAtGg--~~~~~~~~~~~~~~tGdgi~~a~~aGa~~~d~e~~q~~p~~~~~ggg--~~~~ae~ 228 (472)
T 2e5v_A 156 TEKRG---LVEDVDKLVLATGG--YSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGE--VFLLTET 228 (472)
T ss_dssp ETTTE---EECCCSEEEECCCC--CGGGSSSBSSCTTCSCHHHHHHHHTTCCEECTTCEEEEEEEECGGGC--CEECCTH
T ss_pred EEeCC---CeEEeeeEEECCCC--CcccCccccCCCCCchHHHHHHHHcCCCEeCCcceEEEeEEEccCCC--ceeeehh
Confidence 32211 24669999999994 44444432 1112223221110 01122211112 34556766 8888888
Q ss_pred HhccCCEEEEEEecCCccccccCCCCCC-----eeeccceeEEccCCcEEecCC------cEEe-ecEEEEecCccCCCC
Q 013303 216 LAGFAKEVHIASRSVADETHEKQPGYDN-----MWLHSMVERANEDGTVVFRNG------RVVS-ADVIMHCTGYKYNYP 283 (446)
Q Consensus 216 l~~~~~~V~l~~r~~~~~~~~~~~~~~~-----v~~~~~v~~i~~~~~v~~~dG------~~~~-~D~vi~atG~~~~~~ 283 (446)
+...|..+ +..+... .+.+...... +....-..++...+.+.+.-. +.++ +|.++.++|..|+ .
T Consensus 229 ~~~~G~~~-v~~~g~r--f~~~~~~~~el~~rd~v~~~i~~~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~G~dp~-~ 304 (472)
T 2e5v_A 229 LRGEGAQI-INENGER--FLFNYDKRGELAPRDILSRAIYIEMLKGHKVFIDLSKIEDFERKFPVVAKYLARHGHNYK-V 304 (472)
T ss_dssp HHHTTCEE-EETTCCC--GGGGTCTTGGGSCHHHHHHHHHHHHHHTCCEEEECTTCTTHHHHCHHHHHHHHHTTCCTT-S
T ss_pred hcCCceEE-ECCCCCC--CCccCCcccCcCchhHHHHHHHHHHHhCCcEEEeccchHHHHHHhHHHHHHHHHhCcCcc-c
Confidence 88888776 4433332 1211110000 000000011111122322211 1233 5778888999998 5
Q ss_pred CCC-------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cC-----chhHHHH----HHHHHHHHHcCC
Q 013303 284 FLE-------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VI-----PFPFFEL----QSKWIASVLSGR 343 (446)
Q Consensus 284 ~l~-------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~-----~~~~~~~----qa~~~a~~l~g~ 343 (446)
.+. ..|.|.+|.+.+ ++.|+||++|.+.. +. ....+-. .++.+++++++.
T Consensus 305 ~i~v~p~~~~~~GGI~vd~~~~----------t~ipgLyAaGd~a~~~~hg~~rl~~~sl~~~~v~G~~a~~~~a~~ 371 (472)
T 2e5v_A 305 KIPIFPAAHFVDGGIRVNIRGE----------SNIVNLYAIGEVSDSGLHGANRLASNSLLEGLVFGINLPRYVDSS 371 (472)
T ss_dssp CEECEEEEEEESCEEECCTTCB----------CSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHGGGTTTSC
T ss_pred ceEeehhhceeCCCeEECCCCc----------cccCCEEecchhcccccCCCCCCCcccHHHHHHHHHHHHHHHHhh
Confidence 443 246688888877 56899999998754 21 2233333 456666666553
No 100
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=99.35 E-value=4.5e-12 Score=123.91 Aligned_cols=157 Identities=15% Similarity=0.158 Sum_probs=92.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCC---CCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE---SDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~---~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~ 78 (446)
.+||+||||||||+++|..|++.|++|+|||+.+.+|.......... .+..+.......+. ......+...+....
T Consensus 4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~ 82 (397)
T 3oz2_A 4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIA-NEVKGARIYGPSEKR 82 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEE-EEESEEEEECTTCSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhh-cccceEEEEeCCCce
Confidence 37999999999999999999999999999999877653211100000 00011111000000 011222222222111
Q ss_pred ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (446)
Q Consensus 79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V 158 (446)
... ++.... ........++..+..+|.+.+.+.|.. ++++++|+.+...+ +..........++..++++|.|
T Consensus 83 ~~~-~~~~~~----~~~~~~~i~R~~~~~~L~~~a~~~G~~--~~~~~~v~~~~~~~-~~~~~v~~~~~~~~~~~~a~~v 154 (397)
T 3oz2_A 83 PII-LQSEKA----GNEVGYVLERDKFDKHLAALAAKAGAD--VWVKSPALGVIKEN-GKVAGAKIRHNNEIVDVRAKMV 154 (397)
T ss_dssp CEE-EECSSS----SCCCEEEECHHHHHHHHHHHHHHHTCE--EESSCCEEEEEEET-TEEEEEEEEETTEEEEEEEEEE
T ss_pred Eee-cccccc----CCceeEEEEHHHHHHHHHHHHHhcCcE--Eeeeeeeeeeeecc-ceeeeeeecccccceEEEEeEE
Confidence 000 000000 000112347889999999999999988 99999999988766 4444333333445567999999
Q ss_pred EEccCCCCC
Q 013303 159 VVCNGHFSV 167 (446)
Q Consensus 159 VvAtG~~s~ 167 (446)
|.|+|.+|.
T Consensus 155 IgAdG~~S~ 163 (397)
T 3oz2_A 155 IAADGFESE 163 (397)
T ss_dssp EECCCTTCH
T ss_pred EeCCccccH
Confidence 999997654
No 101
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=99.34 E-value=1.4e-12 Score=125.47 Aligned_cols=151 Identities=18% Similarity=0.286 Sum_probs=86.3
Q ss_pred CCeEEEECcChHHHHHHHHHHH---CCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCc--cCC-------ccCce
Q 013303 2 FRHVAVIGAGAAGLVVGHELLR---EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPV--HSS-------LYKSL 69 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~---~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~--~~~-------~y~~l 69 (446)
|+||+|||||++|+++|..|++ .|++|+|||+++.+||.+.................... ... .+..+
T Consensus 1 m~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~ 80 (342)
T 3qj4_A 1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDEL 80 (342)
T ss_dssp CEEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHH
T ss_pred CCcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHH
Confidence 4799999999999999999999 89999999999999997764311000000000000000 000 00000
Q ss_pred eecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303 70 RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (446)
Q Consensus 70 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~ 149 (446)
... .....+... .... ........|.....+..+++.++++.+.. |+++++|++|++.+ +.|+|++.++.
T Consensus 81 ~~~--g~~~~~~~~-~~~~--~~~~~~~~~~~~~g~~~l~~~l~~~~g~~--i~~~~~V~~i~~~~-~~~~v~~~~g~-- 150 (342)
T 3qj4_A 81 LAY--GVLRPLSSP-IEGM--VMKEGDCNFVAPQGISSIIKHYLKESGAE--VYFRHRVTQINLRD-DKWEVSKQTGS-- 150 (342)
T ss_dssp HHT--TSCEECCSC-EETC--CC--CCEEEECTTCTTHHHHHHHHHHTCE--EESSCCEEEEEECS-SSEEEEESSSC--
T ss_pred HhC--CCeecCchh-hcce--eccCCccceecCCCHHHHHHHHHHhcCCE--EEeCCEEEEEEEcC-CEEEEEECCCC--
Confidence 000 000000000 0000 00000112222233455666666666776 99999999999876 78998886653
Q ss_pred eEEEEEcEEEEccCC
Q 013303 150 VEEETFDAVVVCNGH 164 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~ 164 (446)
++.||.||+|+..
T Consensus 151 --~~~ad~vV~A~p~ 163 (342)
T 3qj4_A 151 --PEQFDLIVLTMPV 163 (342)
T ss_dssp --CEEESEEEECSCH
T ss_pred --EEEcCEEEECCCH
Confidence 4789999999984
No 102
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=99.32 E-value=1.7e-12 Score=128.49 Aligned_cols=155 Identities=18% Similarity=0.135 Sum_probs=91.9
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc----CceeeeCCCCCCCCCCCCCCCCCccC--CccCceeecCCCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GGSWIYTSETESDPLGVDPNRYPVHS--SLYKSLRVNLPRE 76 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~----GG~w~~~~~~~~~~~g~~p~~~~~~~--~~y~~l~~~~~~~ 76 (446)
+||+|||||++|+++|..|++.|++|+|+|+.+.. |..............|... .+... .............
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~--~~~~~~~~~~~~~~~~~~~~ 83 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLD--AVKAQGFQQKFGAKFVRGKE 83 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHH--HHHHTTCEEECEEEEEETTE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChH--HHHHcCCcccCCcEEEeCCe
Confidence 69999999999999999999999999999997632 2111100000000000000 00000 0000011000000
Q ss_pred CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEc
Q 013303 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (446)
Q Consensus 77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d 156 (446)
.. .+++..... ..........+..+.+.|.+.+++.|+. ++++++|+++...+ +.+.+.+...+++..++.+|
T Consensus 84 ~~---~~~~~~~~~-~~~~~~~~~~r~~~~~~L~~~a~~~gv~--i~~~~~v~~i~~~~-~~~~v~v~~~~g~~~~~~a~ 156 (421)
T 3nix_A 84 IA---DFNFSDQFS-NGWNWTWQVPRGNFDKTLADEAARQGVD--VEYEVGVTDIKFFG-TDSVTTIEDINGNKREIEAR 156 (421)
T ss_dssp EE---EEETTSCSS-CSCCCEEECCHHHHHHHHHHHHHHHTCE--EECSEEEEEEEEET-TEEEEEEEETTSCEEEEEEE
T ss_pred eE---EEeehhhcC-CCCCceeEECHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeC-CEEEEEEEcCCCCEEEEEcC
Confidence 00 011111000 0001223367889999999999999988 99999999999876 67777777666655679999
Q ss_pred EEEEccCCCC
Q 013303 157 AVVVCNGHFS 166 (446)
Q Consensus 157 ~VVvAtG~~s 166 (446)
.||+|+|.++
T Consensus 157 ~vV~A~G~~s 166 (421)
T 3nix_A 157 FIIDASGYGR 166 (421)
T ss_dssp EEEECCGGGC
T ss_pred EEEECCCCch
Confidence 9999999654
No 103
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=99.30 E-value=1.5e-11 Score=124.34 Aligned_cols=152 Identities=25% Similarity=0.245 Sum_probs=92.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCcee---eeCCCC-C-CCCCCCCCCCCCccCCccCceeecCCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW---IYTSET-E-SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w---~~~~~~-~-~~~~g~~p~~~~~~~~~y~~l~~~~~~~ 76 (446)
.+||+||||||+||++|..|++.|++|+|||+.+.++..- ...+.. . .+..|+ ++.+....+..
T Consensus 11 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl-----------~~~~~~~~~~~ 79 (500)
T 2qa1_A 11 DAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGI-----------LPRFGEVETST 79 (500)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTC-----------GGGGCSCCBCC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCC-----------HHHHHhccccc
Confidence 5799999999999999999999999999999987653210 000000 0 000111 11110000000
Q ss_pred CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEc
Q 013303 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (446)
Q Consensus 77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d 156 (446)
...|....+...............+...+.+.|.+.+.+.++. ++++++|++++.++ +.++|++.++.+ ..++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~~~g-~~~~~a~ 155 (500)
T 2qa1_A 80 QGHFGGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGAD--IRRGHEVLSLTDDG-AGVTVEVRGPEG-KHTLRAA 155 (500)
T ss_dssp EEEETTEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCE--EEETCEEEEEEEET-TEEEEEEEETTE-EEEEEES
T ss_pred cccccceecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCE--EECCcEEEEEEEcC-CeEEEEEEcCCC-CEEEEeC
Confidence 0011110000000000000112345788999999999998887 99999999999876 678888887654 4579999
Q ss_pred EEEEccCCCCCC
Q 013303 157 AVVVCNGHFSVP 168 (446)
Q Consensus 157 ~VVvAtG~~s~p 168 (446)
+||.|+|.+|.-
T Consensus 156 ~vVgADG~~S~V 167 (500)
T 2qa1_A 156 YLVGCDGGRSSV 167 (500)
T ss_dssp EEEECCCTTCHH
T ss_pred EEEECCCcchHH
Confidence 999999987643
No 104
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=99.30 E-value=4.1e-12 Score=129.84 Aligned_cols=183 Identities=14% Similarity=0.125 Sum_probs=103.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC-CcCceeeeCCCCCCCCCCCCCCCCCccC-CccCceeecCCC----
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGSWIYTSETESDPLGVDPNRYPVHS-SLYKSLRVNLPR---- 75 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~-~~GG~w~~~~~~~~~~~g~~p~~~~~~~-~~y~~l~~~~~~---- 75 (446)
.+||+|||||+||++||..|++.|.+|+|+|+.. .+|. .+|.|+...... ...+.+.. ...
T Consensus 28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~------------~~Cnps~ggia~~~lv~ei~a-lgg~~~~ 94 (651)
T 3ces_A 28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQ------------MSCNPAIGGIGKGHLVKEVDA-LGGLMAK 94 (651)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC------------CSSSSEEESTTHHHHHHHHHH-TTCSHHH
T ss_pred cCCEEEECChHHHHHHHHHHHhCCCCEEEEeeccccccc------------ccccccccchhhHHHHHHHHH-hccHHHH
Confidence 3699999999999999999999999999999974 3432 123332111000 00000000 000
Q ss_pred ----CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCce
Q 013303 76 ----ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (446)
Q Consensus 76 ----~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~ 150 (446)
....|........ +..........+..+...+.+.+++ .|+. + ++++|+.+...++..+.|.+.++
T Consensus 95 ~~d~~gi~f~~l~~~kg--pav~~~r~~~Dr~~~~~~L~e~Le~~~GV~--I-~~~~V~~L~~e~g~V~GV~t~dG---- 165 (651)
T 3ces_A 95 AIDQAGIQFRILNASKG--PAVRATRAQADRVLYRQAVRTALENQPNLM--I-FQQAVEDLIVENDRVVGAVTQMG---- 165 (651)
T ss_dssp HHHHHEEEEEEESTTSC--GGGCEEEEEECHHHHHHHHHHHHHTCTTEE--E-EECCEEEEEESSSBEEEEEETTS----
T ss_pred HhhhcccchhhhhcccC--cccccchhhCCHHHHHHHHHHHHHhCCCCE--E-EEEEEEEEEecCCEEEEEEECCC----
Confidence 0000000000000 0000001123456788888888887 5776 6 67899999876522245555433
Q ss_pred EEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303 151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (446)
Q Consensus 151 ~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r 228 (446)
.++.+|.||+||| +.+..+.++|...+. +.+ +| |.+|.++|..|.+.|.+|+.+..
T Consensus 166 ~~I~Ad~VVLATG--t~s~~~~i~G~~~~~----------------~gr---iG-g~~a~eLA~~L~~lG~~v~~~~t 221 (651)
T 3ces_A 166 LKFRAKAVVLTVG--TFLDGKIHIGLDNYS----------------GGR---AG-DPPSIPLSRRLRELPLRVGRLKT 221 (651)
T ss_dssp EEEEEEEEEECCS--TTTCCEEECC---------------------------------CCHHHHHHHTTTCCEEEECC
T ss_pred CEEECCEEEEcCC--CCccCccccCcccCC----------------CCC---cc-chhhhHHHHHHHhcCCeEEEecC
Confidence 3799999999999 555555677765421 223 56 78899999999999999998854
No 105
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=99.29 E-value=1.7e-11 Score=123.79 Aligned_cols=154 Identities=22% Similarity=0.149 Sum_probs=92.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC-C-CccCCccCceeecCCCCCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR-Y-PVHSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~-~-~~~~~~y~~l~~~~~~~~~~ 79 (446)
.+||+||||||+||++|..|++.|++|+|||+.+.++..-. . .+..|.. . +..-.+++.+....+.....
T Consensus 12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r----~----~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 83 (499)
T 2qa2_A 12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESR----G----LGFTARTMEVFDQRGILPAFGPVETSTQGH 83 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCC----S----EEECHHHHHHHHHTTCGGGGCSCCEESEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCc----e----eEECHHHHHHHHHCCCHHHHHhccccccce
Confidence 57999999999999999999999999999999865532100 0 0000000 0 00000111110000000001
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV 159 (446)
+....+...............+...+.+.|.+.+.+.++. ++++++|++++.++ +.++|++.++.+ ..++++|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~~~g-~~~~~a~~vV 159 (499)
T 2qa2_A 84 FGGRPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAE--LLRGHTVRALTDEG-DHVVVEVEGPDG-PRSLTTRYVV 159 (499)
T ss_dssp ETTEEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCE--EEESCEEEEEEECS-SCEEEEEECSSC-EEEEEEEEEE
T ss_pred ecceecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeC-CEEEEEEEcCCC-cEEEEeCEEE
Confidence 1100000000000000112346788999999999998887 99999999999876 678888887655 4679999999
Q ss_pred EccCCCCC
Q 013303 160 VCNGHFSV 167 (446)
Q Consensus 160 vAtG~~s~ 167 (446)
.|+|.+|.
T Consensus 160 gADG~~S~ 167 (499)
T 2qa2_A 160 GCDGGRST 167 (499)
T ss_dssp ECCCTTCH
T ss_pred EccCcccH
Confidence 99998764
No 106
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=99.28 E-value=1.6e-11 Score=125.85 Aligned_cols=152 Identities=19% Similarity=0.116 Sum_probs=90.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC-CCc-cCCccCceeecCCCCCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR-YPV-HSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~-~~~-~~~~y~~l~~~~~~~~~~ 79 (446)
.+||+|||||++||++|..|++.|++|+|||+.+.++....- .++.+.. ..+ ...+++.+..........
T Consensus 49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~--------~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~ 120 (570)
T 3fmw_A 49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRA--------GALHIRTVETLDLRGLLDRFLEGTQVAKGL 120 (570)
T ss_dssp --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSC--------CCBCHHHHHHHHTTTCHHHHTTSCCBCSBC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceE--------EEECHHHHHHHHHcCChHHHHhcCcccCCc
Confidence 469999999999999999999999999999998654311000 0000000 000 000000000000000000
Q ss_pred -cC-----CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEE
Q 013303 80 -FQ-----AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153 (446)
Q Consensus 80 -~~-----d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~ 153 (446)
|. .+++... ..........+...+.+.|.+.+++.|+. |+++++|++++..+ +.++|++...++. .++
T Consensus 121 ~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~l~~~L~~~a~~~gv~--i~~~~~v~~l~~~~-~~v~v~~~~~~G~-~~~ 194 (570)
T 3fmw_A 121 PFAGIFTQGLDFGLV--DTRHPYTGLVPQSRTEALLAEHAREAGAE--IPRGHEVTRLRQDA-EAVEVTVAGPSGP-YPV 194 (570)
T ss_dssp CBTTBCTTCCBGGGS--CCSCCSBBCCCHHHHHHHHHHHHHHHTEE--CCBSCEEEECCBCS-SCEEEEEEETTEE-EEE
T ss_pred eeCCccccccccccc--CCCCCeeEEeCHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CeEEEEEEeCCCc-EEE
Confidence 00 1111100 00001123467889999999999988887 89999999998876 6788888654332 579
Q ss_pred EEcEEEEccCCCCC
Q 013303 154 TFDAVVVCNGHFSV 167 (446)
Q Consensus 154 ~~d~VVvAtG~~s~ 167 (446)
.+|+||.|+|.+|.
T Consensus 195 ~a~~vV~ADG~~S~ 208 (570)
T 3fmw_A 195 RARYGVGCDGGRST 208 (570)
T ss_dssp EESEEEECSCSSCH
T ss_pred EeCEEEEcCCCCch
Confidence 99999999997663
No 107
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=99.28 E-value=3.7e-12 Score=128.64 Aligned_cols=138 Identities=20% Similarity=0.226 Sum_probs=89.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.+||+|||||++||++|..|++.|++|+|||+.+.+|+..... +.| .....+. ..... -...
T Consensus 92 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~---------~~~-------~~~~~l~-~~g~~-~~~~ 153 (497)
T 2bry_A 92 NTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLH---------LWP-------FTIHDLR-ALGAK-KFYG 153 (497)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEE---------CCH-------HHHHHHH-TTTHH-HHCT
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCccc---------CCh-------hHHHHHH-HcCCc-cccc
Confidence 4799999999999999999999999999999988776532111 000 0000000 00000 0000
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcC--CCceEEEEEeC-CCceEEEEEcEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE--SNKWKVKSRKK-DDVVEEETFDAV 158 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~--~~~~~v~~~~~-~~~~~~~~~d~V 158 (446)
.|... .....+..++.++|.+.+++.++. ++++++|+++...+ ++.|.|++.+. +++..++.+|+|
T Consensus 154 ~~~~~---------~~~~~~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~V 222 (497)
T 2bry_A 154 RFCTG---------TLDHISIRQLQLLLLKVALLLGVE--IHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVL 222 (497)
T ss_dssp TTTCT---------TCCEEEHHHHHHHHHHHHHHTTCE--EEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEE
T ss_pred ccccc---------ccccCCHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEE
Confidence 11100 111234578999999999998887 99999999998742 24688888543 332235889999
Q ss_pred EEccCCCCCC
Q 013303 159 VVCNGHFSVP 168 (446)
Q Consensus 159 VvAtG~~s~p 168 (446)
|+|+|..+.+
T Consensus 223 V~A~G~~S~~ 232 (497)
T 2bry_A 223 ISAAGGKFVP 232 (497)
T ss_dssp EECCCTTCCC
T ss_pred EECCCCCccc
Confidence 9999965544
No 108
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=99.28 E-value=3.1e-11 Score=115.50 Aligned_cols=154 Identities=18% Similarity=0.282 Sum_probs=84.0
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCC-CCCCCCCCCCCcc-CC----ccCc-----e
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES-DPLGVDPNRYPVH-SS----LYKS-----L 69 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~-~~~g~~p~~~~~~-~~----~y~~-----l 69 (446)
|++||+|||||++|+++|..|++.|++|+|||+.+.+||.+........ ...+.. .+.. .. .... .
T Consensus 1 m~~dV~IIGaG~~Gl~~A~~L~~~G~~V~vlE~~~~~gg~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 77 (336)
T 1yvv_A 1 MTVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQ---YFTARDRRFATAVKQWQAQGH 77 (336)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETTEEEECSCC---CBCCCSHHHHHHHHHHHHHTS
T ss_pred CCceEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCcccceeEecCCCeEecCCC---eEecCCHHHHHHHHHHHhCCC
Confidence 6789999999999999999999999999999999989887653211000 000000 0000 00 0000 0
Q ss_pred eecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303 70 RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (446)
Q Consensus 70 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~ 149 (446)
..........+.+..+... ......|.....+...++.+++ +++ |+++++|++++..+ +.|+|++.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~--g~~--i~~~~~v~~i~~~~-~~~~v~~~~g~-- 146 (336)
T 1yvv_A 78 VAEWTPLLYNFHAGRLSPS----PDEQVRWVGKPGMSAITRAMRG--DMP--VSFSCRITEVFRGE-EHWNLLDAEGQ-- 146 (336)
T ss_dssp EEEECCCEEEESSSBCCCC----CTTSCEEEESSCTHHHHHHHHT--TCC--EECSCCEEEEEECS-SCEEEEETTSC--
T ss_pred eeeccccceeccCcccccC----CCCCccEEcCccHHHHHHHHHc--cCc--EEecCEEEEEEEeC-CEEEEEeCCCc--
Confidence 0000000000000001000 0001112211223333333333 676 99999999999877 77998865543
Q ss_pred eEEEEEcEEEEccCCCCCCc
Q 013303 150 VEEETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s~p~ 169 (446)
....+|.||+|+|..+..+
T Consensus 147 -~~~~a~~vV~a~g~~~~~~ 165 (336)
T 1yvv_A 147 -NHGPFSHVIIATPAPQAST 165 (336)
T ss_dssp -EEEEESEEEECSCHHHHGG
T ss_pred -CccccCEEEEcCCHHHHHH
Confidence 2335999999999755444
No 109
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=99.27 E-value=1.6e-11 Score=111.16 Aligned_cols=125 Identities=15% Similarity=0.087 Sum_probs=82.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.+||+|||||++|+++|..|++.|.+|+|||+.....|.+ ..+... + . ....+++. +.
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~-~~~~~~----~-~-----~~~~~~~~-----------~~ 60 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMP-FLPPKP----P-F-----PPGSLLER-----------AY 60 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC-SSCCCS----C-C-----CTTCHHHH-----------HC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcc-cCcccc----c-c-----chhhHHhh-----------hc
Confidence 5799999999999999999999999999999984333322 111000 0 0 00000000 00
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCceEEEEEcEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVV 159 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~~~~~~~d~VV 159 (446)
+ . .-+.+.++.+++.+.+++. ++. ++ +++|+++...+ +. +.|.+.++. ++.+|.||
T Consensus 61 d----~----------~g~~~~~~~~~l~~~~~~~~gv~--i~-~~~v~~i~~~~-~~v~~v~~~~g~----~i~a~~VV 118 (232)
T 2cul_A 61 D----P----------KDERVWAFHARAKYLLEGLRPLH--LF-QATATGLLLEG-NRVVGVRTWEGP----PARGEKVV 118 (232)
T ss_dssp C----T----------TCCCHHHHHHHHHHHHHTCTTEE--EE-ECCEEEEEEET-TEEEEEEETTSC----CEECSEEE
T ss_pred c----C----------CCCCHHHHHHHHHHHHHcCCCcE--EE-EeEEEEEEEeC-CEEEEEEECCCC----EEECCEEE
Confidence 0 0 0015678889999999887 776 55 67999998765 43 456554432 68999999
Q ss_pred EccCCCCCCcc
Q 013303 160 VCNGHFSVPRL 170 (446)
Q Consensus 160 vAtG~~s~p~~ 170 (446)
+|+|.++....
T Consensus 119 ~A~G~~s~~~~ 129 (232)
T 2cul_A 119 LAVGSFLGARL 129 (232)
T ss_dssp ECCTTCSSCEE
T ss_pred ECCCCChhhce
Confidence 99997665543
No 110
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=99.24 E-value=7.6e-12 Score=124.80 Aligned_cols=156 Identities=21% Similarity=0.313 Sum_probs=91.4
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCC-CCCCC---CCccCC--ccCceeecCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG-VDPNR---YPVHSS--LYKSLRVNLP 74 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g-~~p~~---~~~~~~--~y~~l~~~~~ 74 (446)
|.+||+|||||++|+++|..|++.|.+|+|+|+.+.+|+.............. ..+.. .+.... .+..+....+
T Consensus 25 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (447)
T 2i0z_A 25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN 104 (447)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCH
Confidence 35799999999999999999999999999999998877543221110000000 00000 000000 0000000000
Q ss_pred CCCccc---CCCCCCcCCCCCCCCCCCCC---CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCC
Q 013303 75 RELMGF---QAYPFVARNYEGSVDLRRYP---GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKD 147 (446)
Q Consensus 75 ~~~~~~---~d~~~~~~~~~~~~~~~~~~---~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~ 147 (446)
...+.+ ...++... .....|| ....+.+.|.+.+++.|+. ++++++|+++...+ +. |.|++.++.
T Consensus 105 ~~~~~~~~~~G~~~~~~-----~~g~~~p~~~~~~~l~~~L~~~~~~~GV~--i~~~~~V~~i~~~~-~~v~~V~~~~G~ 176 (447)
T 2i0z_A 105 EDIITFFENLGVKLKEE-----DHGRMFPVSNKAQSVVDALLTRLKDLGVK--IRTNTPVETIEYEN-GQTKAVILQTGE 176 (447)
T ss_dssp HHHHHHHHHTTCCEEEC-----GGGEEEETTCCHHHHHHHHHHHHHHTTCE--EECSCCEEEEEEET-TEEEEEEETTCC
T ss_pred HHHHHHHHhcCCceEEe-----eCCEEECCCCCHHHHHHHHHHHHHHCCCE--EEeCcEEEEEEecC-CcEEEEEECCCC
Confidence 000000 01111100 0011222 4688899999999998987 99999999998765 54 777765432
Q ss_pred CceEEEEEcEEEEccCCCCCC
Q 013303 148 DVVEEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 148 ~~~~~~~~d~VVvAtG~~s~p 168 (446)
++.+|.||+|||.++.|
T Consensus 177 ----~i~Ad~VVlAtGg~s~~ 193 (447)
T 2i0z_A 177 ----VLETNHVVIAVGGKSVP 193 (447)
T ss_dssp ----EEECSCEEECCCCSSSG
T ss_pred ----EEECCEEEECCCCCcCC
Confidence 68999999999987743
No 111
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=99.24 E-value=1e-11 Score=122.32 Aligned_cols=157 Identities=16% Similarity=0.127 Sum_probs=88.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCc---eeeeCCCCC--CCCCCCCCCCCCccCCccCceeecCCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG---~w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~~~~~ 76 (446)
.+||+|||||++||++|..|++.|++|+|||+.+.++. .+...+... .+..|..... .........+....+..
T Consensus 23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~-~~~~~~~~~~~~~~~~~ 101 (407)
T 3rp8_A 23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIM-ETFGGPLRRMAYRDFRS 101 (407)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHH-HHHSCCCCEEEEEETTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHH-HhhcCCCcceEEEECCC
Confidence 47999999999999999999999999999999875421 111100000 0000000000 00000011111111110
Q ss_pred CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEc
Q 013303 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (446)
Q Consensus 77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d 156 (446)
.-....+++.... ..........++..+.++|.+.+.+ .. |+++++|++++..+ +.++|++.++. ++.+|
T Consensus 102 g~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~--~~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~a~ 171 (407)
T 3rp8_A 102 GENMTQFSLAPLI-ERTGSRPCPVSRAELQREMLDYWGR--DS--VQFGKRVTRCEEDA-DGVTVWFTDGS----SASGD 171 (407)
T ss_dssp CCEEEEEECHHHH-HHHSSCCEEEEHHHHHHHHHHHHCG--GG--EEESCCEEEEEEET-TEEEEEETTSC----EEEES
T ss_pred CCEeEEecchhhh-hhcCCceEEEEHHHHHHHHHHhCCc--CE--EEECCEEEEEEecC-CcEEEEEcCCC----EEeeC
Confidence 0000001110000 0000122335678889999888876 33 99999999999877 77888876654 79999
Q ss_pred EEEEccCCCCCCc
Q 013303 157 AVVVCNGHFSVPR 169 (446)
Q Consensus 157 ~VVvAtG~~s~p~ 169 (446)
.||.|+|.+|.-+
T Consensus 172 ~vV~AdG~~S~vr 184 (407)
T 3rp8_A 172 LLIAADGSHSALR 184 (407)
T ss_dssp EEEECCCTTCSSH
T ss_pred EEEECCCcChHHH
Confidence 9999999876543
No 112
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=99.22 E-value=1.8e-11 Score=124.11 Aligned_cols=157 Identities=20% Similarity=0.245 Sum_probs=87.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC-------ceeeeCCCCCC--CCCCCCCCCCCccCCccCceeec
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG-------GSWIYTSETES--DPLGVDPNRYPVHSSLYKSLRVN 72 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G-------G~w~~~~~~~~--~~~g~~p~~~~~~~~~y~~l~~~ 72 (446)
.+||+|||||++|+++|..|++.|++|+|||+.+.++ +.|........ ...+......+.....+..+...
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~ 186 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence 4799999999999999999999999999999987763 44543210000 00000000000000000000000
Q ss_pred --CCCCCc-ccCCCCCCcCCCCCCCCCCC--CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC
Q 013303 73 --LPRELM-GFQAYPFVARNYEGSVDLRR--YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD 147 (446)
Q Consensus 73 --~~~~~~-~~~d~~~~~~~~~~~~~~~~--~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~ 147 (446)
.+...+ .|..+..+.... ....+. ......+.+.+.+.+++.|++ ++++++|+++...++..+.|++.++.
T Consensus 187 ~~~~~~v~~~~~~~G~~~~i~--~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~--I~~~t~V~~I~~~~~~v~gV~l~~G~ 262 (549)
T 3nlc_A 187 NFYGRKVITEFVEAGAPEEIL--YVSKPHIGTFKLVTMIEKMRATIIELGGE--IRFSTRVDDLHMEDGQITGVTLSNGE 262 (549)
T ss_dssp TCHHHHHHHHHHHTTCCGGGG--TBSSCCCCHHHHHHHHHHHHHHHHHTTCE--EESSCCEEEEEESSSBEEEEEETTSC
T ss_pred cccHHHHHHHHHHcCCCceEe--eccccccccchHHHHHHHHHHHHHhcCCE--EEeCCEEEEEEEeCCEEEEEEECCCC
Confidence 000000 000111110000 000001 012367888899989988988 99999999998876223557765543
Q ss_pred CceEEEEEcEEEEccCCCC
Q 013303 148 DVVEEETFDAVVVCNGHFS 166 (446)
Q Consensus 148 ~~~~~~~~d~VVvAtG~~s 166 (446)
++.+|.||+|+|+++
T Consensus 263 ----~i~Ad~VVlA~G~~s 277 (549)
T 3nlc_A 263 ----EIKSRHVVLAVGHSA 277 (549)
T ss_dssp ----EEECSCEEECCCTTC
T ss_pred ----EEECCEEEECCCCCh
Confidence 799999999999755
No 113
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=99.22 E-value=6.6e-11 Score=120.81 Aligned_cols=159 Identities=19% Similarity=0.133 Sum_probs=92.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC---CCCC--CCCCCCCCCCCCc-cCCccC---ce---
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT---SETE--SDPLGVDPNRYPV-HSSLYK---SL--- 69 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~---~~~~--~~~~g~~p~~~~~-~~~~y~---~l--- 69 (446)
.+||+|||||++||++|..|++.|++|+|||+.+.++..-.-. +... ....|+.. .+. ....+. .+
T Consensus 5 ~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~--~~~~~~~~~~~~~~~~~~ 82 (535)
T 3ihg_A 5 EVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVAD--EVVRADDIRGTQGDFVIR 82 (535)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHH--HHHHSCCSSCTTSCCEEE
T ss_pred cCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHH--HHHhhCCCcccccceeee
Confidence 3699999999999999999999999999999987553110000 0000 00000000 000 000000 00
Q ss_pred e-ecC-CCCCccc-CCCCCCc-CCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCC----ceEE
Q 013303 70 R-VNL-PRELMGF-QAYPFVA-RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN----KWKV 141 (446)
Q Consensus 70 ~-~~~-~~~~~~~-~d~~~~~-~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~----~~~v 141 (446)
. ... ......+ ..++... .............++..+..+|.+.+++.|+. ++++++|++++..+ + .+++
T Consensus 83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~--i~~~~~v~~i~~~~-~~~~~~v~v 159 (535)
T 3ihg_A 83 LAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGA--IRFGTRLLSFRQHD-DDAGAGVTA 159 (535)
T ss_dssp EESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCE--EESSCEEEEEEEEC-GGGCSEEEE
T ss_pred EEeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEECC-CCccccEEE
Confidence 0 000 0000000 0000000 00000001133467889999999999998887 99999999999876 5 7888
Q ss_pred EEEeCCCceEEEEEcEEEEccCCCC
Q 013303 142 KSRKKDDVVEEETFDAVVVCNGHFS 166 (446)
Q Consensus 142 ~~~~~~~~~~~~~~d~VVvAtG~~s 166 (446)
++.++.+ ..++.+|+||.|+|.+|
T Consensus 160 ~~~~~~~-~~~i~a~~vV~AdG~~S 183 (535)
T 3ihg_A 160 RLAGPDG-EYDLRAGYLVGADGNRS 183 (535)
T ss_dssp EEEETTE-EEEEEEEEEEECCCTTC
T ss_pred EEEcCCC-eEEEEeCEEEECCCCcc
Confidence 8887644 45899999999999766
No 114
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=99.21 E-value=7.6e-11 Score=110.18 Aligned_cols=135 Identities=18% Similarity=0.129 Sum_probs=82.7
Q ss_pred CeEEEECcChHHHHHHHHHHHC-CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCC-CCCccc
Q 013303 3 RHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLP-RELMGF 80 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~-~~~~~~ 80 (446)
+||+|||||++|+++|..|++. |.+|+|+|+.+.+||..... +. .+..+....+ ...+.-
T Consensus 40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~--------~~----------~~~~~~~~~~~~~~l~~ 101 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLG--------GQ----------LFSAMIVRKPAHLFLDE 101 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCC--------ST----------TCCCEEEETTTHHHHHH
T ss_pred cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecC--------Cc----------chHHHHcCcHHHHHHHH
Confidence 5999999999999999999997 99999999998887632211 00 1111111100 000000
Q ss_pred CCCCCCcCCCCCCCCCCCC--CCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCCc-eEEEEEe--------C--
Q 013303 81 QAYPFVARNYEGSVDLRRY--PGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNK-WKVKSRK--------K-- 146 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~--~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~--------~-- 146 (446)
.+.++... ...+ .+..++...+.+.+.+ .++. ++++++|+++...+ +. ..|.+.. .
T Consensus 102 ~G~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~gv~--i~~~~~V~~i~~~~-~~v~gv~~~~~~~~~~~~~g~ 171 (284)
T 1rp0_A 102 IGVAYDEQ-------DTYVVVKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKG-NRVGGVVTNWALVAQNHHTQS 171 (284)
T ss_dssp HTCCCEEC-------SSEEEESCHHHHHHHHHHHHHTSTTEE--EEETEEEEEEEEET-TEEEEEEEEEHHHHTCTTTSS
T ss_pred cCCCcccC-------CCEEEecCHHHHHHHHHHHHHhcCCCE--EEcCcEEEEEEecC-CeEEEEEEeccccccccCccc
Confidence 12222211 0111 1456777777766654 5777 89999999998765 43 2344432 1
Q ss_pred CCceEEEEEcEEEEccCCC
Q 013303 147 DDVVEEETFDAVVVCNGHF 165 (446)
Q Consensus 147 ~~~~~~~~~d~VVvAtG~~ 165 (446)
.++..++.+|.||+|+|+.
T Consensus 172 ~g~~~~i~ad~VV~AtG~~ 190 (284)
T 1rp0_A 172 CMDPNVMEAKIVVSSCGHD 190 (284)
T ss_dssp CCCCEEEEEEEEEECCCSS
T ss_pred cCceEEEECCEEEECCCCc
Confidence 1233579999999999953
No 115
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=99.20 E-value=5.4e-11 Score=115.52 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCCccCC
Q 013303 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQ 172 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~ 172 (446)
.....+.+.|.+.+++.|+. ++++++|+++...+ +.|.|++.++ ++.+|.||+|+|.++....+.
T Consensus 146 ~~~~~l~~~l~~~~~~~G~~--i~~~~~V~~i~~~~-~~~~v~~~~g-----~~~a~~vV~a~G~~s~~l~~~ 210 (372)
T 2uzz_A 146 LRSELAIKTWIQLAKEAGCA--QLFNCPVTAIRHDD-DGVTIETADG-----EYQAKKAIVCAGTWVKDLLPE 210 (372)
T ss_dssp EEHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECS-SSEEEEESSC-----EEEEEEEEECCGGGGGGTSTT
T ss_pred EcHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEEcC-CEEEEEECCC-----eEEcCEEEEcCCccHHhhccc
Confidence 34567888898999998987 99999999999876 5677765432 589999999999877554443
No 116
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=99.20 E-value=2.9e-11 Score=122.70 Aligned_cols=155 Identities=20% Similarity=0.209 Sum_probs=89.8
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC----cCceeeeCCCC-CCCCCCCCCCCCCcc-CCccCce-eecCCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ----VGGSWIYTSET-ESDPLGVDPNRYPVH-SSLYKSL-RVNLPR 75 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~----~GG~w~~~~~~-~~~~~g~~p~~~~~~-~~~y~~l-~~~~~~ 75 (446)
+||+|||||++|+++|..|++.|++|+|||+.+. .|..+...... -....|.... +.. ....... ......
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~--~~~~~~~~~~~~~~~~~~ 85 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDE--MKRAGFPIKRGGTFRWGK 85 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHH--HHTTTCCEECEEEEECSS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHH--HHHcCCccccCceEEecC
Confidence 6999999999999999999999999999999862 22221110000 0000000000 000 0000000 000000
Q ss_pred C----CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCce-EEEEEeCCCce
Q 013303 76 E----LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRKKDDVV 150 (446)
Q Consensus 76 ~----~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~-~v~~~~~~~~~ 150 (446)
. .+.+...+.. ........++..+.++|.+.+.+.|+. ++++++|+++...+ +.. .|++...+++.
T Consensus 86 ~~~~~~~~~~~~~~~------~~~~~~~v~r~~l~~~L~~~a~~~Gv~--i~~~~~V~~v~~~~-~~v~gv~~~~~dG~~ 156 (512)
T 3e1t_A 86 EPEPWTFGFTRHPDD------PYGFAYQVERARFDDMLLRNSERKGVD--VRERHEVIDVLFEG-ERAVGVRYRNTEGVE 156 (512)
T ss_dssp CSSCEEEESSSSSSS------TTCCEEBCCHHHHHHHHHHHHHHTTCE--EESSCEEEEEEEET-TEEEEEEEECSSSCE
T ss_pred CccccccccccCCCC------CcceeeEecHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEEC-CEEEEEEEEeCCCCE
Confidence 0 0011100000 001122367889999999999998887 99999999999865 443 35665544545
Q ss_pred EEEEEcEEEEccCCCCCC
Q 013303 151 EEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 151 ~~~~~d~VVvAtG~~s~p 168 (446)
.++.+|.||+|+|.++.-
T Consensus 157 ~~i~ad~VI~AdG~~S~v 174 (512)
T 3e1t_A 157 LMAHARFIVDASGNRTRV 174 (512)
T ss_dssp EEEEEEEEEECCCTTCSS
T ss_pred EEEEcCEEEECCCcchHH
Confidence 689999999999976543
No 117
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=99.20 E-value=4.1e-11 Score=117.64 Aligned_cols=142 Identities=19% Similarity=0.153 Sum_probs=83.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc----CceeeeCCCCC--CCCCCCCCCCCCccCCccCceeecCC-
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLP- 74 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~----GG~w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~~~- 74 (446)
.+||+|||||++||++|..|++.|++|+|||+.+.. |+.+...+... ....|..+ . ........+....+
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~-~--~~~~~~~~~~~~~~~ 81 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVEL-D--SISVPSSSMEYVDAL 81 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCG-G--GTCBCCCEEEEEETT
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCcc-c--cccccccceEEEecC
Confidence 479999999999999999999999999999997653 22211110000 00001110 0 00000000000000
Q ss_pred -CCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEE
Q 013303 75 -RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153 (446)
Q Consensus 75 -~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~ 153 (446)
...... ++. ...+..+..+.++|.+.+ -++. ++++++|+++...+ +.|+|++.++. ++
T Consensus 82 ~g~~~~~--~~~----------~~~~~~~~~l~~~L~~~~--~~~~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~~ 140 (397)
T 2vou_A 82 TGERVGS--VPA----------DWRFTSYDSIYGGLYELF--GPER--YHTSKCLVGLSQDS-ETVQMRFSDGT----KA 140 (397)
T ss_dssp TCCEEEE--EEC----------CCCEEEHHHHHHHHHHHH--CSTT--EETTCCEEEEEECS-SCEEEEETTSC----EE
T ss_pred CCCcccc--ccC----------cccccCHHHHHHHHHHhC--CCcE--EEcCCEEEEEEecC-CEEEEEECCCC----EE
Confidence 000000 000 112244567777777764 2555 99999999999876 67888876543 68
Q ss_pred EEcEEEEccCCCCC
Q 013303 154 TFDAVVVCNGHFSV 167 (446)
Q Consensus 154 ~~d~VVvAtG~~s~ 167 (446)
.+|.||.|+|.+|.
T Consensus 141 ~ad~vV~AdG~~S~ 154 (397)
T 2vou_A 141 EANWVIGADGGASV 154 (397)
T ss_dssp EESEEEECCCTTCH
T ss_pred ECCEEEECCCcchh
Confidence 99999999998765
No 118
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=99.18 E-value=1.1e-10 Score=114.43 Aligned_cols=158 Identities=19% Similarity=0.222 Sum_probs=89.6
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc------C-ceeeeCCCCCCCCCCCCCCCCCc-cCCccCceeec
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV------G-GSWIYTSETESDPLGVDPNRYPV-HSSLYKSLRVN 72 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~------G-G~w~~~~~~~~~~~g~~p~~~~~-~~~~y~~l~~~ 72 (446)
|.+||+|||||++|+++|..|++.|++|+|||+.+.. + |........-....|.... +. ....+..+...
T Consensus 1 m~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~--~~~~~~~~~~~~~~ 78 (394)
T 1k0i_A 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRR--MARDGLVHEGVEIA 78 (394)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHH--HHHHCEEESCEEEE
T ss_pred CCccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHH--HHhcCCccceEEEE
Confidence 5689999999999999999999999999999997642 1 1100000000000010000 00 00000111100
Q ss_pred CCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEE
Q 013303 73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (446)
Q Consensus 73 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~ 152 (446)
....... +++... .........+..++.+.|.+.+.+.++. ++++++|+++...+++.+.|++.. ++...+
T Consensus 79 ~~~~~~~---~~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~g~~--i~~~~~v~~i~~~~~~~~~v~~~~-~g~~~~ 149 (394)
T 1k0i_A 79 FAGQRRR---IDLKRL---SGGKTVTVYGQTEVTRDLMEAREACGAT--TVYQAAEVRLHDLQGERPYVTFER-DGERLR 149 (394)
T ss_dssp ETTEEEE---ECHHHH---HTSCCEEECCHHHHHHHHHHHHHHTTCE--EESSCEEEEEECTTSSSCEEEEEE-TTEEEE
T ss_pred ECCceEE---eccccc---cCCCceEEechHHHHHHHHHHHHhcCCe--EEeceeEEEEEEecCCceEEEEec-CCcEEE
Confidence 0000000 011000 0000112235678888888888888877 999999999987643568888733 333346
Q ss_pred EEEcEEEEccCCCCCCc
Q 013303 153 ETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 153 ~~~d~VVvAtG~~s~p~ 169 (446)
+.+|.||.|+|.+|..+
T Consensus 150 ~~a~~vV~AdG~~S~vr 166 (394)
T 1k0i_A 150 LDCDYIAGCDGFHGISR 166 (394)
T ss_dssp EECSEEEECCCTTCSTG
T ss_pred EEeCEEEECCCCCcHHH
Confidence 89999999999877644
No 119
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=99.17 E-value=8.7e-11 Score=115.31 Aligned_cols=146 Identities=21% Similarity=0.244 Sum_probs=86.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc-----CceeeeCCCCCCCCCCCCCCCCCccCCccCcee------
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV-----GGSWIYTSETESDPLGVDPNRYPVHSSLYKSLR------ 70 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~-----GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~------ 70 (446)
.+||+|||||++|+++|..|++.|++|+|||+.+.+ |+.|...+.... ..+....+++.+.
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~--------~~l~~~gl~~~~~~~~~~~ 97 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQ--------EAMKKAGLLQTYYDLALPM 97 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHH--------HHHHHTTCHHHHHHHCBCC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHH--------HHHHhcChHHHHHHhhccc
Confidence 369999999999999999999999999999998654 333432210000 0000000110000
Q ss_pred ---ecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC
Q 013303 71 ---VNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD 147 (446)
Q Consensus 71 ---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~ 147 (446)
....... .+.++.++.. ........++..+.++|.+.+.. . .++++++|++++..+ +.|+|++.++.
T Consensus 98 ~~~~~~~~g~-~~~~~~~~~~----~~~~~~~i~r~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~-~~v~v~~~~g~ 167 (398)
T 2xdo_A 98 GVNIADEKGN-ILSTKNVKPE----NRFDNPEINRNDLRAILLNSLEN--D--TVIWDRKLVMLEPGK-KKWTLTFENKP 167 (398)
T ss_dssp CEEEECSSSE-EEEECCCGGG----TTSSCCEECHHHHHHHHHHTSCT--T--SEEESCCEEEEEECS-SSEEEEETTSC
T ss_pred ceEEECCCCC-chhhcccccc----CCCCCceECHHHHHHHHHhhcCC--C--EEEECCEEEEEEECC-CEEEEEECCCc
Confidence 0000000 0000100000 00011234677888888775542 3 389999999999876 67888876653
Q ss_pred CceEEEEEcEEEEccCCCCCCc
Q 013303 148 DVVEEETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 148 ~~~~~~~~d~VVvAtG~~s~p~ 169 (446)
++.+|.||.|+|.+|..+
T Consensus 168 ----~~~ad~vV~AdG~~S~vR 185 (398)
T 2xdo_A 168 ----SETADLVILANGGMSKVR 185 (398)
T ss_dssp ----CEEESEEEECSCTTCSCC
T ss_pred ----EEecCEEEECCCcchhHH
Confidence 689999999999876544
No 120
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=99.16 E-value=1.6e-10 Score=118.95 Aligned_cols=158 Identities=17% Similarity=0.210 Sum_probs=90.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHC------CCcEEEEeeCCCcCceeeeCCCCCCCCCC---CCCCC----CCccCCcc-C
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE------GHTVVVYEKGEQVGGSWIYTSETESDPLG---VDPNR----YPVHSSLY-K 67 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~------g~~v~v~e~~~~~GG~w~~~~~~~~~~~g---~~p~~----~~~~~~~y-~ 67 (446)
.+||+|||||+|||++|..|++. |++|+|||+.+.+|+........ .+.. +.+.. ..+..... .
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l--~~~~l~~ll~~~~~~g~~~~~~~~~~ 112 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACL--DPRAFEELFPDWKEKGAPLNTPVTED 112 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEE--CTHHHHHHCTTHHHHTCCCCEECCEE
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCcccccccc--CHHHHHHHHHHHHhcCCceeeeechh
Confidence 36999999999999999999999 99999999988776542111000 0000 00000 00000000 0
Q ss_pred ceeecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEe-
Q 013303 68 SLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRK- 145 (446)
Q Consensus 68 ~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~- 145 (446)
.+..........++..|.. .. ........++.++.++|.+.+++.|++ |+++++|+++...+++... |.+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~v~r~~l~~~L~~~a~~~Gv~--i~~g~~v~~l~~~~~g~V~gV~~~~~ 186 (584)
T 2gmh_A 113 RFGILTEKYRIPVPILPGL-PM---NNHGNYVVRLGHLVSWMGEQAEALGVE--VYPGYAAAEILFHEDGSVKGIATNDV 186 (584)
T ss_dssp EEEEECSSCEEECCCCTTS-TT---CCTTCEECCHHHHHHHHHHHHHHTTCE--EETTCCEEEEEECTTSSEEEEEECCE
T ss_pred heeeeccCCCccccccCcc-cc---ccCCCEEEeHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCCCEEEEEeCCc
Confidence 0000001011111111100 00 001123357889999999999999988 9999999999876534333 65542
Q ss_pred ---CCCce-------EEEEEcEEEEccCCCCC
Q 013303 146 ---KDDVV-------EEETFDAVVVCNGHFSV 167 (446)
Q Consensus 146 ---~~~~~-------~~~~~d~VVvAtG~~s~ 167 (446)
.+++. .++.+|+||+|+|.++.
T Consensus 187 g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~ 218 (584)
T 2gmh_A 187 GIQKDGAPKTTFERGLELHAKVTIFAEGCHGH 218 (584)
T ss_dssp EECTTSCEEEEEECCCEEECSEEEECCCTTCH
T ss_pred cccCCCCcccccCCceEEECCEEEEeeCCCch
Confidence 12211 47899999999997654
No 121
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=99.16 E-value=1.5e-10 Score=112.06 Aligned_cols=65 Identities=11% Similarity=0.107 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCC
Q 013303 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p 168 (446)
.....+.+.|.+.+++.|+. ++++++|+++...+++.|.|.+.++ +..++.+|.||+|+|.++..
T Consensus 147 ~~~~~~~~~l~~~~~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~g--~~~~~~a~~VV~A~G~~s~~ 211 (369)
T 3dme_A 147 VDSHALMLAYQGDAESDGAQ--LVFHTPLIAGRVRPEGGFELDFGGA--EPMTLSCRVLINAAGLHAPG 211 (369)
T ss_dssp ECHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECTTSSEEEEECTT--SCEEEEEEEEEECCGGGHHH
T ss_pred ECHHHHHHHHHHHHHHCCCE--EECCCEEEEEEEcCCceEEEEECCC--ceeEEEeCEEEECCCcchHH
Confidence 35678889999999999988 9999999999987634488876543 23479999999999987643
No 122
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=99.16 E-value=7.3e-11 Score=115.04 Aligned_cols=145 Identities=21% Similarity=0.182 Sum_probs=86.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce---eeeCCCCC--CCCCCCCCCCCCc-cCCccCceeecCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS---WIYTSETE--SDPLGVDPNRYPV-HSSLYKSLRVNLPR 75 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~---w~~~~~~~--~~~~g~~p~~~~~-~~~~y~~l~~~~~~ 75 (446)
.+||+|||||++|+++|..|++.|++|+|||+.+.+++. ....+... ....|.... +. .......+....+.
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~--~~~~~~~~~~~~~~~~g 88 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDD--VLQGSHTPPTYETWMHN 88 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHH--HHTTCBCCSCEEEEETT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHH--HHhhCCCccceEEEeCC
Confidence 369999999999999999999999999999998766421 10000000 000000000 00 00000001000000
Q ss_pred CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEE
Q 013303 76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (446)
Q Consensus 76 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~ 155 (446)
..+..++.. . ......++.++.++|.+.+.+.|+. ++++++|++++. + + +|++.++. ++.+
T Consensus 89 --~~~~~~~~~-~------~~~~~~~r~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~-~-~--~v~~~~g~----~~~a 149 (379)
T 3alj_A 89 --KSVSKETFN-G------LPWRIMTRSHLHDALVNRARALGVD--ISVNSEAVAADP-V-G--RLTLQTGE----VLEA 149 (379)
T ss_dssp --EEEEEECGG-G------CCEEEEEHHHHHHHHHHHHHHTTCE--EESSCCEEEEET-T-T--EEEETTSC----EEEC
T ss_pred --ceeeeccCC-C------CceEEECHHHHHHHHHHHHHhcCCE--EEeCCEEEEEEe-C-C--EEEECCCC----EEEc
Confidence 000001110 0 0123456789999999999988887 999999999986 3 4 77765443 6899
Q ss_pred cEEEEccCCCCC
Q 013303 156 DAVVVCNGHFSV 167 (446)
Q Consensus 156 d~VVvAtG~~s~ 167 (446)
|.||+|+|.++.
T Consensus 150 d~vV~AdG~~s~ 161 (379)
T 3alj_A 150 DLIVGADGVGSK 161 (379)
T ss_dssp SEEEECCCTTCH
T ss_pred CEEEECCCccHH
Confidence 999999996553
No 123
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=99.16 E-value=2.5e-10 Score=117.40 Aligned_cols=164 Identities=18% Similarity=0.163 Sum_probs=92.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCC-------CCCCCCCC-C-----------cc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP-------LGVDPNRY-P-----------VH 62 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~-------~g~~p~~~-~-----------~~ 62 (446)
.+||+|||||++||++|..|++.|.+|+|||+.+.+||........-... .|...+.. + ..
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~ 205 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND 205 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence 36999999999999999999999999999999998887654332100000 00000000 0 00
Q ss_pred CCccCceeecCCCC--CcccCCCCCCcCCCCCCCC-CC------CCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEE
Q 013303 63 SSLYKSLRVNLPRE--LMGFQAYPFVARNYEGSVD-LR------RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL 133 (446)
Q Consensus 63 ~~~y~~l~~~~~~~--~~~~~d~~~~~~~~~~~~~-~~------~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~ 133 (446)
......+..+.+.. .+.-...+|.......+.. .. ....+..+.+.|.+.+++.+++ |+++++|+++..
T Consensus 206 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~--i~~~~~v~~l~~ 283 (571)
T 1y0p_A 206 PALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNID--LRMNTRGIEVLK 283 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCE--EESSEEEEEEEE
T ss_pred HHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCE--EEeCCEeeEeEE
Confidence 00000000000000 0000011111000000000 00 1134578999999999999988 999999999987
Q ss_pred cCCCc-eEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303 134 VESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 134 ~~~~~-~~v~~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
.+++. +-|.+.+.+++..++.+|.||+|||.++.
T Consensus 284 ~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~ 318 (571)
T 1y0p_A 284 DDKGTVKGILVKGMYKGYYWVKADAVILATGGFAK 318 (571)
T ss_dssp CTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred cCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCccc
Confidence 64233 33666553444557899999999997654
No 124
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=99.16 E-value=1.1e-10 Score=114.51 Aligned_cols=152 Identities=16% Similarity=0.111 Sum_probs=87.6
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCc-cCCccCceeecCCCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPV-HSSLYKSLRVNLPRE 76 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G---G~w~~~~~~~--~~~~g~~p~~~~~-~~~~y~~l~~~~~~~ 76 (446)
+||+|||||++|+++|..|++.|++|+|||+.+.+. ......+... ....|.... +. ....+..+....+..
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~--~~~~~~~~~~~~~~~~~g 84 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAE--VTRRGGRVRHELEVYHDG 84 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHH--HHHTTCEEECEEEEEETT
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHH--HHHhCCCcceeEEEeCCC
Confidence 589999999999999999999999999999976541 0000000000 000000000 00 000000000000000
Q ss_pred CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCce--EEEEEeCCCceEEE
Q 013303 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKW--KVKSRKKDDVVEEE 153 (446)
Q Consensus 77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~--~v~~~~~~~~~~~~ 153 (446)
.....++.... .........++.++.+.|.+.+++. ++. ++++++|++++..+ +.+ .|++.++. ++
T Consensus 85 -~~~~~~~~~~~---~~~~~~~~~~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~-~~v~g~v~~~~g~----~~ 153 (399)
T 2x3n_A 85 -ELLRYFNYSSV---DARGYFILMPCESLRRLVLEKIDGEATVE--MLFETRIEAVQRDE-RHAIDQVRLNDGR----VL 153 (399)
T ss_dssp -EEEEEEETTSS---CGGGCEEECCHHHHHHHHHHHHTTCTTEE--EECSCCEEEEEECT-TSCEEEEEETTSC----EE
T ss_pred -CEEEecchHHh---cccCccccccHHHHHHHHHHHhhhcCCcE--EEcCCEEEEEEEcC-CceEEEEEECCCC----EE
Confidence 00000111100 0000112357789999999999887 777 99999999999876 667 77775543 78
Q ss_pred EEcEEEEccCCCCC
Q 013303 154 TFDAVVVCNGHFSV 167 (446)
Q Consensus 154 ~~d~VVvAtG~~s~ 167 (446)
.+|.||+|+|.+|.
T Consensus 154 ~ad~vV~AdG~~s~ 167 (399)
T 2x3n_A 154 RPRVVVGADGIASY 167 (399)
T ss_dssp EEEEEEECCCTTCH
T ss_pred ECCEEEECCCCChH
Confidence 99999999997664
No 125
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=99.15 E-value=3.2e-11 Score=122.84 Aligned_cols=183 Identities=15% Similarity=0.150 Sum_probs=108.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC-CcCceeeeCCCCCCCCCCCCCCCCCccC-CccCceeecCCC----
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGSWIYTSETESDPLGVDPNRYPVHS-SLYKSLRVNLPR---- 75 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~-~~GG~w~~~~~~~~~~~g~~p~~~~~~~-~~y~~l~~~~~~---- 75 (446)
.+||+|||||+||++||..|++.|.+|+|+|+.. .+|+. +|+|+...... ...+.+.. ...
T Consensus 27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~------------~Cnps~GGia~g~lv~elda-lgg~~~~ 93 (637)
T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQM------------SCNPAIGGIAKGIVVREIDA-LGGEMGK 93 (637)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC------------CSCSEEECTTHHHHHHHHHH-HTCSHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCc------------CccccccccchHHHHHHHHH-hhhHHHH
Confidence 3699999999999999999999999999999974 44421 23332110000 00000000 000
Q ss_pred ----CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCc
Q 013303 76 ----ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDV 149 (446)
Q Consensus 76 ----~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~ 149 (446)
....|........ +..........+..+.+.+.+.++++ |+. + ++++|+.+...+ +. +.|.+.++
T Consensus 94 ~~d~~gi~f~~l~~~kG--pav~~~r~~~Dr~~~~~~L~~~Le~~~GVe--I-~~~~Vt~L~~e~-g~V~GV~t~dG--- 164 (637)
T 2zxi_A 94 AIDQTGIQFKMLNTRKG--KAVQSPRAQADKKRYREYMKKVCENQENLY--I-KQEEVVDIIVKN-NQVVGVRTNLG--- 164 (637)
T ss_dssp HHHHHEEEEEEESTTSC--GGGCEEEEEECHHHHHHHHHHHHHTCTTEE--E-EESCEEEEEESS-SBEEEEEETTS---
T ss_pred HhhhcccceeecccccC--ccccchhhhCCHHHHHHHHHHHHHhCCCCE--E-EEeEEEEEEecC-CEEEEEEECCC---
Confidence 0000000000000 00000011234578888899888874 776 6 678999998765 44 34655444
Q ss_pred eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
.++.+|.||+||| ..++.+.++|...+. +.+ + |+.++.++|..|.+.|.+|..+.+.
T Consensus 165 -~~i~AdaVVLATG--~~s~~~~~~G~~~~~----------------~Gr---~-G~~~A~~la~~L~~lG~~v~~l~tg 221 (637)
T 2zxi_A 165 -VEYKTKAVVVTTG--TFLNGVIYIGDKMIP----------------GGR---L-GEPRSEGLSDFYRRFDFPLIRFKTG 221 (637)
T ss_dssp -CEEECSEEEECCT--TCBTCEEEETTEEEE----------------CSB---T-TBCCBCTHHHHHHHTTCCCEEEEEE
T ss_pred -cEEEeCEEEEccC--CCccCceeccceecC----------------CCC---C-CchhHHHHHHHHHhcCCceEEecCC
Confidence 2799999999999 555555666654321 122 2 3678899999999999988777653
No 126
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=99.15 E-value=3.1e-10 Score=116.49 Aligned_cols=163 Identities=18% Similarity=0.220 Sum_probs=91.6
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCC-------CCCCCCCCC-----cc-------C
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP-------LGVDPNRYP-----VH-------S 63 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~-------~g~~p~~~~-----~~-------~ 63 (446)
.||+|||||++||++|..|++.|.+|+|||+.+.+||........-... .|...+... .. .
T Consensus 122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~ 201 (566)
T 1qo8_A 122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI 201 (566)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence 5899999999999999999999999999999988876533321100000 000000000 00 0
Q ss_pred CccCceeecCCCC--CcccCCCCCCcCCCCCCCC-------CCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEc
Q 013303 64 SLYKSLRVNLPRE--LMGFQAYPFVARNYEGSVD-------LRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV 134 (446)
Q Consensus 64 ~~y~~l~~~~~~~--~~~~~d~~~~~~~~~~~~~-------~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~ 134 (446)
..+..+..+.+.. .+.-...+|.......+.. .....++..+.+.|.+.+++.|+. |+++++|+++...
T Consensus 202 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~--i~~~~~v~~l~~~ 279 (566)
T 1qo8_A 202 KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGID--TRLNSRVVKLVVN 279 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCC--EECSEEEEEEEEC
T ss_pred HHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCE--EEeCCEEEEEEEC
Confidence 0000000000000 0000011111000000000 011134788999999999999998 9999999999876
Q ss_pred CCCc-eEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303 135 ESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 135 ~~~~-~~v~~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
+++. +-|.+.+.+++..++.+|.||+|||.++.
T Consensus 280 ~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~ 313 (566)
T 1qo8_A 280 DDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM 313 (566)
T ss_dssp TTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred CCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence 4233 34666544444557899999999998764
No 127
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=99.14 E-value=1.2e-10 Score=116.42 Aligned_cols=151 Identities=15% Similarity=0.065 Sum_probs=89.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc--CceeeeCCCCC---CCCCCCCCCCCCccCCccCceeecCCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV--GGSWIYTSETE---SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~--GG~w~~~~~~~---~~~~g~~p~~~~~~~~~y~~l~~~~~~~ 76 (446)
.+||+|||||++|+++|..|++.|++|+|||+.+.+ |..+.-. ... .+..|............+..+....+..
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~-~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 84 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGD-AVSKAHFDKLGMPYPKGEELENKINGIKLYSPDM 84 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCC-EEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccc-cccHHHHHHhcCCCCchHHHHhhhcceEEECCCC
Confidence 369999999999999999999999999999998653 2211100 000 0000100000000000001111111111
Q ss_pred CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEeC-CCceEEEE
Q 013303 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKK-DDVVEEET 154 (446)
Q Consensus 77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~~-~~~~~~~~ 154 (446)
... ++++. .....++..+.+.|.+.+.+.|++ ++++++|+++...+ +... |++.+. +++..++.
T Consensus 85 ~~~---~~~~~--------~~~~i~r~~l~~~L~~~a~~~gv~--i~~~~~v~~i~~~~-~~v~gv~~~~~~~G~~~~~~ 150 (453)
T 3atr_A 85 QTV---WTVNG--------EGFELNAPLYNQRVLKEAQDRGVE--IWDLTTAMKPIFED-GYVKGAVLFNRRTNEELTVY 150 (453)
T ss_dssp SCE---EEEEE--------EEEEECHHHHHHHHHHHHHHTTCE--EESSEEEEEEEEET-TEEEEEEEEETTTTEEEEEE
T ss_pred ceE---EeECC--------CcEEEcHHHHHHHHHHHHHHcCCE--EEeCcEEEEEEEEC-CEEEEEEEEEcCCCceEEEE
Confidence 000 00000 112346788999999999988887 99999999998765 5444 666543 44445799
Q ss_pred EcEEEEccCCCCC
Q 013303 155 FDAVVVCNGHFSV 167 (446)
Q Consensus 155 ~d~VVvAtG~~s~ 167 (446)
+|.||.|+|.++.
T Consensus 151 ad~VV~AdG~~s~ 163 (453)
T 3atr_A 151 SKVVVEATGYSRS 163 (453)
T ss_dssp CSEEEECCGGGCT
T ss_pred cCEEEECcCCchh
Confidence 9999999997664
No 128
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=99.13 E-value=1e-09 Score=112.66 Aligned_cols=149 Identities=23% Similarity=0.217 Sum_probs=89.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC-CCc-cCCccCc-----------
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR-YPV-HSSLYKS----------- 68 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~-~~~-~~~~y~~----------- 68 (446)
.+||+|||||++|+++|..|++.|++|+|+|+.+..+..... +..|.. ..+ ...+++.
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~---------~l~p~~~~~l~~lGl~~~l~~~~~~~~~~ 93 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGE---------SLLPGTMSILNRLGLQEKIDAQNYVKKPS 93 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCC---------BCCHHHHHHHHHTTCHHHHHHHCCEEECE
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceee---------eECHHHHHHHHHcCCcHHHHhcCCcccCC
Confidence 379999999999999999999999999999997533211000 000000 000 0000000
Q ss_pred eeecCC--CC--CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEE
Q 013303 69 LRVNLP--RE--LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR 144 (446)
Q Consensus 69 l~~~~~--~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~ 144 (446)
...... .. .+.+....... ..........+..+.++|.+.+++.|+. ++++++|+++...+++.+.|++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~r~~l~~~L~~~a~~~Gv~--i~~g~~V~~v~~~~g~~~~V~~~ 167 (591)
T 3i3l_A 94 ATFLWGQDQAPWTFSFAAPKVAP----WVFDHAVQVKREEFDKLLLDEARSRGIT--VHEETPVTDVDLSDPDRVVLTVR 167 (591)
T ss_dssp EEEECSSSCCCEEEECCCC--CT----TCCSCEEECCHHHHHHHHHHHHHHTTCE--EETTCCEEEEECCSTTCEEEEEE
T ss_pred cEEEecCCCccceeecccccccc----cccCeeEEEcHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCEEEEEEe
Confidence 000000 00 00110000000 0000122357789999999999998887 99999999998764367888887
Q ss_pred eCCCceEEEEEcEEEEccCCCC
Q 013303 145 KKDDVVEEETFDAVVVCNGHFS 166 (446)
Q Consensus 145 ~~~~~~~~~~~d~VVvAtG~~s 166 (446)
+ ++...++.+|.||.|+|.++
T Consensus 168 ~-~G~~~~i~AdlVV~AdG~~S 188 (591)
T 3i3l_A 168 R-GGESVTVESDFVIDAGGSGG 188 (591)
T ss_dssp E-TTEEEEEEESEEEECCGGGC
T ss_pred c-CCceEEEEcCEEEECCCCcc
Confidence 5 33345799999999999655
No 129
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=99.12 E-value=1.9e-09 Score=110.27 Aligned_cols=156 Identities=12% Similarity=0.060 Sum_probs=89.0
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee---CCCCC--CCCCCCCCCCCCcc-CCcc----Cceeec
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY---TSETE--SDPLGVDPNRYPVH-SSLY----KSLRVN 72 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~---~~~~~--~~~~g~~p~~~~~~-~~~y----~~l~~~ 72 (446)
+||+||||||+||++|..|++.|++|+|||+.+.++....- .+..- .+..|+... +.. .... ......
T Consensus 27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~--~~~~~~~~~~~~~~~~~~ 104 (549)
T 2r0c_A 27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQ--IRTAGWPGDHPLDAAWVT 104 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHH--HHTSSCCTTSBCCEEEES
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHH--HHhhcCCcccccceEEec
Confidence 58999999999999999999999999999998765421110 00000 000010000 000 0000 000000
Q ss_pred CCCCCcccCCCCCCcCCC--C--CCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-C
Q 013303 73 LPRELMGFQAYPFVARNY--E--GSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-D 147 (446)
Q Consensus 73 ~~~~~~~~~d~~~~~~~~--~--~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~ 147 (446)
.... ..+..+++..... . .........+...+.++|.+.+.+. ++++++|++++.++ +.+++++.+. +
T Consensus 105 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~-----v~~~~~v~~~~~~~-~~v~v~~~~~~~ 177 (549)
T 2r0c_A 105 RVGG-HEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER-----LRTRSRLDSFEQRD-DHVRATITDLRT 177 (549)
T ss_dssp SBTS-CEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG-----EECSEEEEEEEECS-SCEEEEEEETTT
T ss_pred cCCC-ceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh-----cccCcEEEEEEEeC-CEEEEEEEECCC
Confidence 0000 0000011110000 0 0001123356788888999888775 89999999999876 6788888773 2
Q ss_pred CceEEEEEcEEEEccCCCCC
Q 013303 148 DVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 148 ~~~~~~~~d~VVvAtG~~s~ 167 (446)
++..++.+|+||.|+|.+|.
T Consensus 178 G~~~~i~a~~vVgADG~~S~ 197 (549)
T 2r0c_A 178 GATRAVHARYLVACDGASSP 197 (549)
T ss_dssp CCEEEEEEEEEEECCCTTCH
T ss_pred CCEEEEEeCEEEECCCCCcH
Confidence 44467999999999998764
No 130
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=99.11 E-value=6.6e-10 Score=109.48 Aligned_cols=159 Identities=18% Similarity=0.135 Sum_probs=89.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCc-EEEEeeCCCcCce---eeeCCCCC--CCCCCCCCCCCCc-cCCccCceeecCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGS---WIYTSETE--SDPLGVDPNRYPV-HSSLYKSLRVNLP 74 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~~~~GG~---w~~~~~~~--~~~~g~~p~~~~~-~~~~y~~l~~~~~ 74 (446)
.+||+|||||++||++|..|++.|++ |+|||+.+.++.. ....+... ....|+... +. .......+....+
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~--l~~~~~~~~~~~~~~~ 81 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA--LAATAIPTHELRYIDQ 81 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHH--HHHHSEEECEEEEECT
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHH--HHhhCCCcceEEEEcC
Confidence 46999999999999999999999999 9999998765321 11100000 000000000 00 0000000000000
Q ss_pred CCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-hC-CCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceE
Q 013303 75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FG-VDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVE 151 (446)
Q Consensus 75 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-~~-l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~ 151 (446)
.... +...+.... ..........++.++.++|.+.+.+ .+ +. ++++++|+++.. + +.++|++.+. +++..
T Consensus 82 ~g~~-~~~~~~~~~--~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~--v~~~~~v~~i~~-~-~~v~v~~~~~~~g~~~ 154 (410)
T 3c96_A 82 SGAT-VWSEPRGVE--AGNAYPQYSIHRGELQMILLAAVRERLGQQA--VRTGLGVERIEE-R-DGRVLIGARDGHGKPQ 154 (410)
T ss_dssp TSCE-EEEEECGGG--GTCSSCEEEEEHHHHHHHHHHHHHHHHCTTS--EEESEEEEEEEE-E-TTEEEEEEEETTSCEE
T ss_pred CCCE-EeeccCCcc--ccCCCCeeeeeHHHHHHHHHHHHHhhCCCcE--EEECCEEEEEec-C-CccEEEEecCCCCCce
Confidence 0000 000000000 0000011235678899999988876 45 35 999999999988 5 6788888762 23335
Q ss_pred EEEEcEEEEccCCCCCCc
Q 013303 152 EETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 152 ~~~~d~VVvAtG~~s~p~ 169 (446)
++.+|.||.|+|.+|..+
T Consensus 155 ~~~ad~vV~AdG~~S~vR 172 (410)
T 3c96_A 155 ALGADVLVGADGIHSAVR 172 (410)
T ss_dssp EEEESEEEECCCTTCHHH
T ss_pred EEecCEEEECCCccchhH
Confidence 789999999999877544
No 131
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=99.10 E-value=9.6e-11 Score=119.71 Aligned_cols=184 Identities=16% Similarity=0.161 Sum_probs=104.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC-CcCceeeeCCCCCCCCCCCCCCCCCcc-CCcc------Cceeec-
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGSWIYTSETESDPLGVDPNRYPVH-SSLY------KSLRVN- 72 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~-~~GG~w~~~~~~~~~~~g~~p~~~~~~-~~~y------~~l~~~- 72 (446)
.+||+|||||+||++||..|++.|.+|+|+|+.. .+|+.+ |.|+..... ..+. ..+...
T Consensus 21 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~------------c~ps~gGia~~~lv~el~al~g~~~~~ 88 (641)
T 3cp8_A 21 MYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMS------------CNPAIGGVAKGQITREIDALGGEMGKA 88 (641)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCS------------SCSEEECHHHHHHHHHHHHHTCSHHHH
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCc------------cccchhhhhHHHHHHHHHhcccHHHHH
Confidence 4799999999999999999999999999999974 355422 222110000 0000 000000
Q ss_pred CCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceE-EEEEeCCCce
Q 013303 73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVV 150 (446)
Q Consensus 73 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~~~~~~ 150 (446)
.......|........ +..........+..+.+.+.+.++++ ++. + ++.+|+.+...+ +... |.+.++
T Consensus 89 ~d~~gi~f~~l~~~kg--pav~~~r~~~Dr~~l~~~L~~~l~~~~GV~--I-~~~~V~~L~~d~-g~V~GV~t~~G---- 158 (641)
T 3cp8_A 89 IDATGIQFRMLNRSKG--PAMHSPRAQADKTQYSLYMRRIVEHEPNID--L-LQDTVIGVSANS-GKFSSVTVRSG---- 158 (641)
T ss_dssp HHHHEEEEEEECSSSC--TTTCEEEEEECHHHHHHHHHHHHHTCTTEE--E-EECCEEEEEEET-TEEEEEEETTS----
T ss_pred HHhcCCchhhcccccC--ccccchhhhcCHHHHHHHHHHHHHhCCCCE--E-EeeEEEEEEecC-CEEEEEEECCC----
Confidence 0000000000000000 00000011235668888888888875 776 5 567899987655 4443 555443
Q ss_pred EEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303 151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (446)
Q Consensus 151 ~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r 228 (446)
.++.+|.||+|||.+ ++.+.++|...++ +.+++ |+.++++++..|.+.|.+|..+..
T Consensus 159 ~~i~Ad~VVLATG~~--s~~~i~~G~~~~~----------------~g~~v---G~~~a~~la~~L~~~G~kv~~l~t 215 (641)
T 3cp8_A 159 RAIQAKAAILACGTF--LNGLIHIGMDHFP----------------GGRST---AEPPVEGLTESLASLGFSFGRLKT 215 (641)
T ss_dssp CEEEEEEEEECCTTC--BTCEEEETTEEEE----------------CSSST---TSCCBCSHHHHHHHTTCCEEEEEE
T ss_pred cEEEeCEEEECcCCC--CCccceeeeeeec----------------ccccc---CCchhhhhHHHHHhCCceEEeecC
Confidence 279999999999954 3333333332210 11221 467888999999999999876644
No 132
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=99.10 E-value=2.8e-10 Score=110.80 Aligned_cols=61 Identities=21% Similarity=0.151 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303 99 YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 99 ~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
.....++.+.|.+.+++.|+. ++++++|+++...+ +.|.|++.++ ++.+|.||+|+|.++.
T Consensus 160 ~~~~~~~~~~l~~~~~~~g~~--i~~~~~v~~i~~~~-~~~~v~~~~g-----~~~a~~vV~A~G~~s~ 220 (382)
T 1ryi_A 160 HVEPYFVCKAYVKAAKMLGAE--IFEHTPVLHVERDG-EALFIKTPSG-----DVWANHVVVASGVWSG 220 (382)
T ss_dssp BCCHHHHHHHHHHHHHHTTCE--EETTCCCCEEECSS-SSEEEEETTE-----EEEEEEEEECCGGGTH
T ss_pred EEcHHHHHHHHHHHHHHCCCE--EEcCCcEEEEEEEC-CEEEEEcCCc-----eEEcCEEEECCChhHH
Confidence 345688999999999999987 99999999998766 6676655321 6899999999997654
No 133
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=99.09 E-value=4.5e-10 Score=117.81 Aligned_cols=61 Identities=20% Similarity=0.307 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
.....+...|.+.+++.|+. |+++++|+++...+ +.|.|++.++. ++.+|.||+|+|.++.
T Consensus 414 v~p~~l~~aL~~~a~~~Gv~--i~~~t~V~~l~~~~-~~v~V~t~~G~----~i~Ad~VVlAtG~~s~ 474 (676)
T 3ps9_A 414 LCPAELTRNVLELAQQQGLQ--IYYQYQLQNFSRKD-DCWLLNFAGDQ----QATHSVVVLANGHQIS 474 (676)
T ss_dssp ECHHHHHHHHHHHHHHTTCE--EEESCCEEEEEEET-TEEEEEETTSC----EEEESEEEECCGGGGG
T ss_pred eCHHHHHHHHHHHHHhCCCE--EEeCCeeeEEEEeC-CeEEEEECCCC----EEECCEEEECCCcchh
Confidence 35578889999999999987 99999999999877 67877765543 6899999999998754
No 134
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=99.08 E-value=4.4e-10 Score=110.41 Aligned_cols=159 Identities=20% Similarity=0.173 Sum_probs=80.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc-----CceeeeCCCCC--CCCCCCCCCC-CCccCCcc--Cceee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV-----GGSWIYTSETE--SDPLGVDPNR-YPVHSSLY--KSLRV 71 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~-----GG~w~~~~~~~--~~~~g~~p~~-~~~~~~~y--~~l~~ 71 (446)
..+|+||||||+||++|..|++.|++|+||||.+.+ |......+... ....|..... .+.....+ .....
T Consensus 1 sm~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~ 80 (412)
T 4hb9_A 1 SMHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRF 80 (412)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEE
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeE
Confidence 368999999999999999999999999999997644 21111100000 0000000000 00000000 00000
Q ss_pred cCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceE
Q 013303 72 NLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVE 151 (446)
Q Consensus 72 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~ 151 (446)
.............................++.++.+.|.+ .+...|+++++|++++..+++..+|++.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~-----~~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~---- 151 (412)
T 4hb9_A 81 YNERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNK-----GLANTIQWNKTFVRYEHIENGGIKIFFADGS---- 151 (412)
T ss_dssp ECTTSCEEEC--------------CEEEEEHHHHHHHHHT-----TCTTTEECSCCEEEEEECTTSCEEEEETTSC----
T ss_pred ecCCcceecccCCccccccccccccceEeeHHHHHHHHHh-----hccceEEEEEEEEeeeEcCCCeEEEEECCCC----
Confidence 0000000000000000000000000011234555555543 2334599999999998876567888887765
Q ss_pred EEEEcEEEEccCCCCCCc
Q 013303 152 EETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 152 ~~~~d~VVvAtG~~s~p~ 169 (446)
++++|.||.|.|.+|.-+
T Consensus 152 ~~~adlvVgADG~~S~vR 169 (412)
T 4hb9_A 152 HENVDVLVGADGSNSKVR 169 (412)
T ss_dssp EEEESEEEECCCTTCHHH
T ss_pred EEEeeEEEECCCCCcchH
Confidence 789999999999877543
No 135
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=99.04 E-value=6.7e-10 Score=108.20 Aligned_cols=59 Identities=24% Similarity=0.177 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEeCCCceEEEEEcEEEEccCCCC
Q 013303 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFS 166 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~~~~~~~~~~~d~VVvAtG~~s 166 (446)
.....+...|.+.+++.|+. ++++++|+++...+ +.|. |++.++ ++.+|.||+|+|.++
T Consensus 146 ~~~~~l~~~l~~~~~~~Gv~--i~~~~~v~~i~~~~-~~v~gv~~~~g-----~i~a~~VV~A~G~~s 205 (382)
T 1y56_B 146 ADPFEATTAFAVKAKEYGAK--LLEYTEVKGFLIEN-NEIKGVKTNKG-----IIKTGIVVNATNAWA 205 (382)
T ss_dssp ECHHHHHHHHHHHHHHTTCE--EECSCCEEEEEESS-SBEEEEEETTE-----EEECSEEEECCGGGH
T ss_pred ECHHHHHHHHHHHHHHCCCE--EECCceEEEEEEEC-CEEEEEEECCc-----EEECCEEEECcchhH
Confidence 45678888999999999987 99999999999876 6676 665322 689999999999765
No 136
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=99.04 E-value=3.3e-10 Score=110.16 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
.....+...|.+.+++.|+. ++++++|+++...+ +.|.|++.++ ++.+|.||+|+|.++.
T Consensus 151 ~~~~~~~~~l~~~a~~~Gv~--i~~~~~V~~i~~~~-~~~~V~t~~g-----~i~a~~VV~A~G~~s~ 210 (381)
T 3nyc_A 151 IDTDALHQGYLRGIRRNQGQ--VLCNHEALEIRRVD-GAWEVRCDAG-----SYRAAVLVNAAGAWCD 210 (381)
T ss_dssp ECHHHHHHHHHHHHHHTTCE--EESSCCCCEEEEET-TEEEEECSSE-----EEEESEEEECCGGGHH
T ss_pred ECHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEEeC-CeEEEEeCCC-----EEEcCEEEECCChhHH
Confidence 45678888899999999987 99999999999876 6677766432 6899999999998654
No 137
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=99.03 E-value=7.9e-10 Score=107.89 Aligned_cols=60 Identities=22% Similarity=0.275 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
.....+...|.+.+++.|+. ++++++|+++...+ +.|.|++.+ .++.+|.||+|+|.++.
T Consensus 147 ~~~~~~~~~l~~~~~~~Gv~--i~~~~~v~~i~~~~-~~~~v~~~~-----g~~~a~~vV~A~G~~~~ 206 (389)
T 2gf3_A 147 LFSENCIRAYRELAEARGAK--VLTHTRVEDFDISP-DSVKIETAN-----GSYTADKLIVSMGAWNS 206 (389)
T ss_dssp EEHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECS-SCEEEEETT-----EEEEEEEEEECCGGGHH
T ss_pred EeHHHHHHHHHHHHHHCCCE--EEcCcEEEEEEecC-CeEEEEeCC-----CEEEeCEEEEecCccHH
Confidence 34578888999999999987 99999999999876 567776532 16899999999997654
No 138
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=99.03 E-value=4.1e-10 Score=111.89 Aligned_cols=65 Identities=17% Similarity=0.124 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEeCe---EEEEEEEcCCCceE-EEEEeCCCceEEEEEcEEEEccCCCCCCccC
Q 013303 100 PGHEEVLRYLQNFAREFGVDQVVRLHT---EVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFSVPRLA 171 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~---~V~~v~~~~~~~~~-v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p 171 (446)
.....+...|.+.+++.|+. +++++ +|++|...+ +.++ |++.++ .++.+|.||+|+|.++....+
T Consensus 158 ~~~~~~~~~L~~~a~~~Gv~--i~~~t~~~~V~~i~~~~-~~v~gV~t~~G----~~i~Ad~VV~AtG~~s~~l~~ 226 (438)
T 3dje_A 158 AHARNALVAAAREAQRMGVK--FVTGTPQGRVVTLIFEN-NDVKGAVTADG----KIWRAERTFLCAGASAGQFLD 226 (438)
T ss_dssp ECHHHHHHHHHHHHHHTTCE--EEESTTTTCEEEEEEET-TEEEEEEETTT----EEEECSEEEECCGGGGGGTSC
T ss_pred ecHHHHHHHHHHHHHhcCCE--EEeCCcCceEEEEEecC-CeEEEEEECCC----CEEECCEEEECCCCChhhhcC
Confidence 34578889999999999988 99999 999998865 6677 766554 278999999999987654433
No 139
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=99.02 E-value=2.2e-10 Score=113.57 Aligned_cols=42 Identities=31% Similarity=0.567 Sum_probs=39.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
++||+|||||++|++||..|++.|++|+|+|+++.+||.+..
T Consensus 1 ~~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t 42 (431)
T 3k7m_X 1 MYDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYS 42 (431)
T ss_dssp CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCE
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecc
Confidence 479999999999999999999999999999999999997753
No 140
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=99.01 E-value=2.2e-09 Score=110.27 Aligned_cols=163 Identities=21% Similarity=0.197 Sum_probs=91.2
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCC-------CCCCCCCCCCCc-----cCCcc----
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES-------DPLGVDPNRYPV-----HSSLY---- 66 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~-------~~~g~~p~~~~~-----~~~~y---- 66 (446)
+||+|||||++||++|..|++.|++|+|||+.+.+||........-. ...|...+.... ....+
T Consensus 127 ~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~~ 206 (572)
T 1d4d_A 127 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDP 206 (572)
T ss_dssp CSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence 58999999999999999999999999999999988876443211000 000000000000 00000
Q ss_pred ---CceeecCCCC--CcccCCCCCCcCCCCCCCC-C------CCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEc
Q 013303 67 ---KSLRVNLPRE--LMGFQAYPFVARNYEGSVD-L------RRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV 134 (446)
Q Consensus 67 ---~~l~~~~~~~--~~~~~d~~~~~~~~~~~~~-~------~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~ 134 (446)
..+..+.+.. .+.-...+|.......+.. . .....+..+.+.|.+.+++.|++ |+++++|+++...
T Consensus 207 ~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~--i~~~t~v~~l~~~ 284 (572)
T 1d4d_A 207 ELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTD--IRLNSRVVRILED 284 (572)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCE--EESSEEEEEEEEC
T ss_pred HHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCe--EEecCEEEEEEEC
Confidence 0000000000 0000011111000000000 0 01124678999999999999988 9999999999765
Q ss_pred C-CCceEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303 135 E-SNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 135 ~-~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
+ +..+-|.+.+.+++..++.+|.||+|||.++.
T Consensus 285 ~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~ 318 (572)
T 1d4d_A 285 ASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK 318 (572)
T ss_dssp --CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred CCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence 4 22344666654454567899999999997654
No 141
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=99.01 E-value=2.5e-10 Score=108.18 Aligned_cols=139 Identities=17% Similarity=0.222 Sum_probs=81.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCce-eeeCCCCCCCCCCCCCCCCCccCCccCceeecCCC-CC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGS-WIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPR-EL 77 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~-w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~-~~ 77 (446)
.+||+|||||++|+++|..|++. |++|+|+|+...+||. |.. ++ .+.......+. ..
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~---------g~----------~~~~~~~~~~~~~~ 139 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLG---------GQ----------LFSAMVMRKPADVF 139 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCC---------BT----------TCCCEEEETTTHHH
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccC---------Cc----------cchhhhcchHHHHH
Confidence 46999999999999999999997 9999999999887753 421 11 11111111000 00
Q ss_pred cccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCC----------------CceE
Q 013303 78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVES----------------NKWK 140 (446)
Q Consensus 78 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~----------------~~~~ 140 (446)
+.-...++... + ......+..++.+.|.+.+.+. ++. ++++++|+.+...++ +..+
T Consensus 140 L~~~Gv~~~~~----G-~~~~~~~~~d~~~~L~~~a~~~~gV~--i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~r 212 (344)
T 3jsk_A 140 LDEVGVPYEDE----G-DYVVVKHAALFTSTVLSKVLQRPNVK--LFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVR 212 (344)
T ss_dssp HHHHTCCCEEC----S-SEEEESCHHHHHHHHHHHHHTCTTEE--EEETEEEEEEEEEEC----------------CCEE
T ss_pred HHHcCCccccc----C-CeEEEecHHHHHHHHHHHHHhCCCCE--EEeCCEEEEEEecCCcccccccccccccccCCCce
Confidence 00011122110 0 0011123466777777777763 776 889999999876541 2122
Q ss_pred E---EEE------eCC----CceEEEEEcEEEEccCCCC
Q 013303 141 V---KSR------KKD----DVVEEETFDAVVVCNGHFS 166 (446)
Q Consensus 141 v---~~~------~~~----~~~~~~~~d~VVvAtG~~s 166 (446)
| .+. .+. .+..++.+++||+|||+.+
T Consensus 213 V~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~ATG~~s 251 (344)
T 3jsk_A 213 IAGVVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDG 251 (344)
T ss_dssp EEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEECCCSSS
T ss_pred EeEEEeeeeeeeccCCcccccCceEEEcCEEEECCCCCc
Confidence 2 221 111 1345799999999999855
No 142
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=99.00 E-value=1.3e-09 Score=111.63 Aligned_cols=65 Identities=12% Similarity=0.007 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEEccCCCC
Q 013303 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFS 166 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVvAtG~~s 166 (446)
.....+...+...+.+.|+. ++++++|+++...++..|.|++.+. .++..++.+|.||+|+|.++
T Consensus 167 vd~~~l~~~L~~~a~~~G~~--i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s 232 (561)
T 3da1_A 167 TDDARLTLEIMKEAVARGAV--ALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV 232 (561)
T ss_dssp CCHHHHHHHHHHHHHHTTCE--EEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred EcHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence 34567788888888889988 9999999999987623366888763 23456899999999999865
No 143
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=99.00 E-value=2.1e-09 Score=112.84 Aligned_cols=62 Identities=13% Similarity=0.298 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
.....+...|.+.+++.|+. |+++++|+++...+ +.|.|.+.++. .++.+|.||+|+|.++.
T Consensus 409 v~p~~l~~aL~~~a~~~Gv~--i~~~t~V~~l~~~~-~~v~V~t~~G~---~~i~Ad~VVlAtG~~s~ 470 (689)
T 3pvc_A 409 LCPSDLTHALMMLAQQNGMT--CHYQHELQRLKRID-SQWQLTFGQSQ---AAKHHATVILATGHRLP 470 (689)
T ss_dssp ECHHHHHHHHHHHHHHTTCE--EEESCCEEEEEECS-SSEEEEEC-CC---CCEEESEEEECCGGGTT
T ss_pred ECHHHHHHHHHHHHHhCCCE--EEeCCeEeEEEEeC-CeEEEEeCCCc---EEEECCEEEECCCcchh
Confidence 35578888899999999987 99999999999877 67888775542 14889999999998754
No 144
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=98.99 E-value=2.7e-09 Score=111.02 Aligned_cols=162 Identities=14% Similarity=0.072 Sum_probs=91.3
Q ss_pred CeEEEECcChHHHHHHHHHHH-CCCcEEEEeeCCCcCceee---eCCCCC--CCCCCCCCCCCCc-cCCccCceeecC--
Q 013303 3 RHVAVIGAGAAGLVVGHELLR-EGHTVVVYEKGEQVGGSWI---YTSETE--SDPLGVDPNRYPV-HSSLYKSLRVNL-- 73 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~-~g~~v~v~e~~~~~GG~w~---~~~~~~--~~~~g~~p~~~~~-~~~~y~~l~~~~-- 73 (446)
.||+||||||+||++|..|++ .|++|+|||+.+.++.... ..++.- .+..|+... +. .......+....
T Consensus 33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~--~~~~~~~~~~~~~~~~~ 110 (639)
T 2dkh_A 33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADS--ILKEACWINDVTFWKPD 110 (639)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHH--HHHHSEEECEEEEEEEC
T ss_pred CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHH--HHHhcccccceEEECCC
Confidence 589999999999999999999 9999999999865432110 000000 000010000 00 000000000000
Q ss_pred C---CCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC---CceEEEEEe--
Q 013303 74 P---RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES---NKWKVKSRK-- 145 (446)
Q Consensus 74 ~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~---~~~~v~~~~-- 145 (446)
+ ..+.....++.... ..........+...+.++|.+.+.+.+....|+++++|++++.+++ ..++|++.+
T Consensus 111 ~~~~g~~~~~~~~~~~~~--~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~ 188 (639)
T 2dkh_A 111 PGQPGRIARHGRVQDTED--GLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCD 188 (639)
T ss_dssp TTSTTCEEEEEEEESSCT--TSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECS
T ss_pred CCCCcceEeecccCcccC--CCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEecc
Confidence 0 00000000110000 0000011235678999999999999876222999999999987652 258888775
Q ss_pred --CCCceEEEEEcEEEEccCCCCCC
Q 013303 146 --KDDVVEEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 146 --~~~~~~~~~~d~VVvAtG~~s~p 168 (446)
.++...++++|+||.|+|.+|..
T Consensus 189 ~~~~G~~~~i~a~~vVgADG~~S~v 213 (639)
T 2dkh_A 189 AAHAGQIETVQARYVVGCDGARSNV 213 (639)
T ss_dssp GGGTTCEEEEEEEEEEECCCTTCHH
T ss_pred ccCCCCeEEEEeCEEEECCCcchHH
Confidence 23445679999999999987653
No 145
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=98.97 E-value=1.9e-09 Score=105.62 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
....+...|.+.+++.|+. ++++++|+++...+ +.|+|.+.+ + ++.+|.||+|+|.++.
T Consensus 151 ~~~~~~~~l~~~a~~~Gv~--i~~~~~V~~i~~~~-~~v~v~t~~--g---~i~a~~VV~A~G~~s~ 209 (397)
T 2oln_A 151 DVRGTLAALFTLAQAAGAT--LRAGETVTELVPDA-DGVSVTTDR--G---TYRAGKVVLACGPYTN 209 (397)
T ss_dssp EHHHHHHHHHHHHHHTTCE--EEESCCEEEEEEET-TEEEEEESS--C---EEEEEEEEECCGGGHH
T ss_pred cHHHHHHHHHHHHHHcCCE--EECCCEEEEEEEcC-CeEEEEECC--C---EEEcCEEEEcCCcChH
Confidence 3467778888888888887 99999999998866 667765432 1 6899999999997643
No 146
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=98.97 E-value=2e-09 Score=105.67 Aligned_cols=61 Identities=21% Similarity=0.159 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCC
Q 013303 99 YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (446)
Q Consensus 99 ~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s 166 (446)
......+.+.|.+.+++.|+. ++++++|+++...++..|.|++.++ ++.+|.||+|+|.++
T Consensus 170 ~~~~~~~~~~l~~~~~~~g~~--i~~~~~v~~i~~~~~~~~~v~~~~g-----~~~a~~vV~a~G~~s 230 (405)
T 2gag_B 170 IAKHDHVAWAFARKANEMGVD--IIQNCEVTGFIKDGEKVTGVKTTRG-----TIHAGKVALAGAGHS 230 (405)
T ss_dssp BCCHHHHHHHHHHHHHHTTCE--EECSCCEEEEEESSSBEEEEEETTC-----CEEEEEEEECCGGGH
T ss_pred cCCHHHHHHHHHHHHHHCCCE--EEcCCeEEEEEEeCCEEEEEEeCCc-----eEECCEEEECCchhH
Confidence 345678889999999998987 9999999999886523366665432 589999999999755
No 147
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=98.96 E-value=8.1e-09 Score=104.58 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCce-EEEEEeCCCceEEEEEc-EEEEccCCCC
Q 013303 104 EVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRKKDDVVEEETFD-AVVVCNGHFS 166 (446)
Q Consensus 104 ~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~-~v~~~~~~~~~~~~~~d-~VVvAtG~~s 166 (446)
.+.+.|.+.+++.|++ |+++++|+++..++++.. -|.+.+ .+...++.+| .||+|||.++
T Consensus 203 ~l~~~L~~~~~~~Gv~--i~~~t~v~~L~~~~~g~v~GV~~~~-~g~~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 203 MLMKPLVETAEKLGVR--AEYDMRVQTLVTDDTGRVVGIVAKQ-YGKEVAVRARRGVVLATGSFA 264 (510)
T ss_dssp HHHHHHHHHHHHTTCE--EECSEEEEEEEECTTCCEEEEEEEE-TTEEEEEEEEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHcCCE--EEecCEeEEEEECCCCcEEEEEEEE-CCcEEEEEeCCeEEEeCCChh
Confidence 8889999999999988 999999999988733443 355555 3345578996 9999999876
No 148
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=98.95 E-value=4.3e-10 Score=103.60 Aligned_cols=43 Identities=35% Similarity=0.577 Sum_probs=39.7
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
|..||+|||||||||+||..|++.|++|+|||+.+.+||.+..
T Consensus 1 Mt~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~ 43 (336)
T 3kkj_A 1 MTVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSS 43 (336)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccc
Confidence 7889999999999999999999999999999999999997653
No 149
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=98.95 E-value=5.5e-09 Score=105.59 Aligned_cols=64 Identities=14% Similarity=0.109 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEEccCCCCC
Q 013303 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVvAtG~~s~ 167 (446)
....+...+.+.+.+.|+. ++++++|+++...+ +.|.|++.+. +++..++.+|.||+|+|.++.
T Consensus 147 ~~~~l~~~l~~~a~~~Gv~--i~~~~~V~~l~~~~-~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~ 211 (501)
T 2qcu_A 147 DDARLVLANAQMVVRKGGE--VLTRTRATSARREN-GLWIVEAEDIDTGKKYSWQARGLVNATGPWVK 211 (501)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EECSEEEEEEEEET-TEEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred cHHHHHHHHHHHHHHcCCE--EEcCcEEEEEEEeC-CEEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence 4677888888888888987 99999999998876 6788888752 344457999999999998754
No 150
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=98.91 E-value=1.3e-08 Score=106.14 Aligned_cols=161 Identities=16% Similarity=0.112 Sum_probs=90.2
Q ss_pred CeEEEECcChHHHHHHHHHHH-----CCCcEEEEeeCCCcCce---eeeCCCCC--CCCCCCCCCCCCc-cCCccCceee
Q 013303 3 RHVAVIGAGAAGLVVGHELLR-----EGHTVVVYEKGEQVGGS---WIYTSETE--SDPLGVDPNRYPV-HSSLYKSLRV 71 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~-----~g~~v~v~e~~~~~GG~---w~~~~~~~--~~~~g~~p~~~~~-~~~~y~~l~~ 71 (446)
+||+||||||+||++|..|++ .|++|+|||+.+..... ....++.- .+..|+... +. ....+..+..
T Consensus 9 ~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~lGl~~~--l~~~~~~~~~~~~ 86 (665)
T 1pn0_A 9 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADK--ILSEANDMSTIAL 86 (665)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHH--HHTTCBCCCEEEE
T ss_pred CcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHCCCHHH--HHHhccccceEEE
Confidence 589999999999999999999 99999999997543210 00000000 000111000 00 0000111110
Q ss_pred cCCC---CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC---CCCcEEeCeEEEEEEEcC-------CCc
Q 013303 72 NLPR---ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG---VDQVVRLHTEVLNARLVE-------SNK 138 (446)
Q Consensus 72 ~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~---l~~~i~~~~~V~~v~~~~-------~~~ 138 (446)
..+. .+.....++.... ..........+...+.++|.+.+.+++ +. ++++++|++++.++ +..
T Consensus 87 ~~~~~~g~i~~~~~~~~~~~--~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~--v~~g~~v~~~~~d~~~~~~~~~~~ 162 (665)
T 1pn0_A 87 YNPDENGHIRRTDRIPDTLP--GISRYHQVVLHQGRIERRILDSIAEISDTRIK--VERPLIPEKMEIDSSKAEDPEAYP 162 (665)
T ss_dssp EEECTTSCEEEEEEEESSCT--TSCSSCCEECCHHHHHHHHHHHHHHHHTTSSC--EECSEEEEEEEECGGGTTCTTCCC
T ss_pred EeCCCCcceEeecccCcccC--CCCCCeeEEeeHHHHHHHHHHHHHhcCCCceE--EEeCCEEEEEEecCcccccCCCCC
Confidence 0000 0000000100000 000001223577899999999999887 66 99999999998764 135
Q ss_pred eEEEEEeC----------------------------------------CCceEEEEEcEEEEccCCCCCCc
Q 013303 139 WKVKSRKK----------------------------------------DDVVEEETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 139 ~~v~~~~~----------------------------------------~~~~~~~~~d~VVvAtG~~s~p~ 169 (446)
.+|++.+. ++...++++|+||.|.|.+|.-+
T Consensus 163 V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~VR 233 (665)
T 1pn0_A 163 VTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVR 233 (665)
T ss_dssp EEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHH
T ss_pred EEEEEEecccccccccccccccccccccccccccccccccccccccCCCCceEEEEeCEEEeccCCCCHHH
Confidence 77776652 23446799999999999877543
No 151
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=98.88 E-value=3.9e-09 Score=105.60 Aligned_cols=42 Identities=29% Similarity=0.446 Sum_probs=38.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCC------CcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREG------HTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g------~~v~v~e~~~~~GG~w~~ 43 (446)
++||+|||||++||+||..|++.| ++|+|||+++.+||....
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s 52 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQT 52 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCE
T ss_pred CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEE
Confidence 479999999999999999999999 999999999999986543
No 152
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=98.87 E-value=2.2e-09 Score=97.01 Aligned_cols=144 Identities=15% Similarity=0.120 Sum_probs=90.2
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC---------------------------------cccc-ccCCCC-C
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---------------------------------DETH-EKQPGY-D 242 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~---------------------------------~~~~-~~~~~~-~ 242 (446)
.+|+|||+|++|+++|..|++.+.+|+++.+... ...+ +.+.+. +
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g 83 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP 83 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence 3699999999999999999999999999998620 0001 111222 2
Q ss_pred -CeeeccceeEEccC-Cc---EEecCCcEEeecEEEEecCccCCCCCC-----------------------CCCCeeeeC
Q 013303 243 -NMWLHSMVERANED-GT---VVFRNGRVVSADVIMHCTGYKYNYPFL-----------------------ETNGIVTVD 294 (446)
Q Consensus 243 -~v~~~~~v~~i~~~-~~---v~~~dG~~~~~D~vi~atG~~~~~~~l-----------------------~~~g~i~~~ 294 (446)
.+. ...|.++..+ +. |.+.+|+++++|.||+|||...+...+ .+.| +.++
T Consensus 84 v~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g-~~~~ 161 (232)
T 2cul_A 84 LHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLG-FRFV 161 (232)
T ss_dssp EEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTT-CCEE
T ss_pred cEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCC-CeEE
Confidence 233 4577777543 22 667889889999999999995442110 0011 0000
Q ss_pred C----------C----------CcccccccccCCCCCCCeEEecCCCccCchhHHHHHHHHHHHHHcCC
Q 013303 295 D----------N----------RVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 295 ~----------~----------~~~~l~~~~~~~~~~p~l~~iG~~~~~~~~~~~~~qa~~~a~~l~g~ 343 (446)
. . ...+..+..+..+++|+||++|++.....+..+..|++.+|.++...
T Consensus 162 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a~~g~~~~~~~~g~~~a~~i~~~ 230 (232)
T 2cul_A 162 EREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCVREGDYARMSEEGKRLAEHLLHE 230 (232)
T ss_dssp EEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecccCccHHHHHHHHHHHHHHHHhh
Confidence 0 0 00001111233246899999998873235667788999999998643
No 153
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=98.87 E-value=7.3e-10 Score=108.04 Aligned_cols=134 Identities=22% Similarity=0.287 Sum_probs=80.2
Q ss_pred CeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCc---CceeeeCCCCCCCCCCCCCCCCCccCCcc-Cc-eeec-CC
Q 013303 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQV---GGSWIYTSETESDPLGVDPNRYPVHSSLY-KS-LRVN-LP 74 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~---GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~-l~~~-~~ 74 (446)
+||+|||||++||++|..|++. |++|+|||+.+.+ |+.....+....... . ...+ +. +... .+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~ 71 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPA--N-------PLSYLDAPERLNPQF 71 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTT--C-------GGGGSSCGGGGCCEE
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhc--C-------cchhhhhhHHHhhcc
Confidence 5899999999999999999999 9999999998766 443333221111000 0 0000 00 0000 00
Q ss_pred CCCcccCC--CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEE
Q 013303 75 RELMGFQA--YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (446)
Q Consensus 75 ~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~ 152 (446)
...+.+.+ ..+... ........++.++.+.|.+.+.+.|+. ++++++|++++.. . +
T Consensus 72 ~~~~~~~~~g~~~~~~----~~~~~~~~~r~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~~------------~----~ 129 (381)
T 3c4a_A 72 LEDFKLVHHNEPSLMS----TGVLLCGVERRGLVHALRDKCRSQGIA--IRFESPLLEHGEL------------P----L 129 (381)
T ss_dssp ECCEEEEESSSEEECC----CCSCEEEEEHHHHHHHHHHHHHHTTCE--EETTCCCCSGGGC------------C----G
T ss_pred ccceEEEeCCeeEEec----CCCceeeecHHHHHHHHHHHHHHCCCE--EEeCCEeccchhc------------c----c
Confidence 00011100 000000 000112357789999999999998887 9999999877421 0 2
Q ss_pred EEEcEEEEccCCCCC
Q 013303 153 ETFDAVVVCNGHFSV 167 (446)
Q Consensus 153 ~~~d~VVvAtG~~s~ 167 (446)
+.+|.||.|+|.+|.
T Consensus 130 ~~ad~vV~AdG~~S~ 144 (381)
T 3c4a_A 130 ADYDLVVLANGVNHK 144 (381)
T ss_dssp GGCSEEEECCGGGGG
T ss_pred ccCCEEEECCCCCch
Confidence 469999999998776
No 154
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=98.84 E-value=1.2e-08 Score=100.67 Aligned_cols=40 Identities=38% Similarity=0.629 Sum_probs=37.5
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~ 42 (446)
+||+|||||++||+||..|++.|++|+|||+++.+||...
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~ 40 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFT 40 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCcee
Confidence 5899999999999999999999999999999999998654
No 155
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=98.83 E-value=1.7e-08 Score=95.07 Aligned_cols=137 Identities=16% Similarity=0.189 Sum_probs=80.5
Q ss_pred CeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCc-eeeeCCCCCCCCCCCCCCCCCccCCccCceeecCC-CCCc
Q 013303 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGG-SWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLP-RELM 78 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG-~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~-~~~~ 78 (446)
+||+|||||++|+++|..|++. |++|+|||+.+.+|| .|... ..+........ ...+
T Consensus 66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g-------------------~~~~~~~~~~~~~~~L 126 (326)
T 2gjc_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGG-------------------QLFSAMVMRKPAHLFL 126 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCG-------------------GGCCCEEEETTTHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccC-------------------cccchhhhhhHHHHHH
Confidence 4899999999999999999998 999999999988874 44311 01111111100 0000
Q ss_pred ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcC--C-C--ce-EEEEEe------
Q 013303 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVE--S-N--KW-KVKSRK------ 145 (446)
Q Consensus 79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~--~-~--~~-~v~~~~------ 145 (446)
.-...++... .......+..++...|.+.+... ++. ++.+++|+.+.... + + .. -|.+..
T Consensus 127 ~~~Gv~~~~~-----g~~~~~~~~~~~~~~L~~~a~~~~GV~--i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~ 199 (326)
T 2gjc_A 127 QELEIPYEDE-----GDYVVVKHAALFISTVLSKVLQLPNVK--LFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQA 199 (326)
T ss_dssp HHTTCCCEEC-----SSEEEESCHHHHHHHHHHHHHTSTTEE--EETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC
T ss_pred HhhCcccccC-----CCeEEEcchHHHHHHHHHHHHHhcCcE--EEecceeeeeeecccccCCCcEEEEEEecceeeccc
Confidence 0011222111 00011114567777777777764 776 88899999997653 1 2 11 122221
Q ss_pred C----CCceEEEEE---------------cEEEEccCCC
Q 013303 146 K----DDVVEEETF---------------DAVVVCNGHF 165 (446)
Q Consensus 146 ~----~~~~~~~~~---------------d~VVvAtG~~ 165 (446)
+ ..+..++.+ +.||.||||.
T Consensus 200 g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~ 238 (326)
T 2gjc_A 200 HGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHD 238 (326)
T ss_dssp ---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC
T ss_pred ccceeccCceEEEEeeccccccccccccCCEEEECcCCC
Confidence 1 012357899 9999999974
No 156
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=98.82 E-value=2.7e-08 Score=99.45 Aligned_cols=106 Identities=26% Similarity=0.328 Sum_probs=83.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...
T Consensus 169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 207 (464)
T 2eq6_A 169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ----------------------------------------- 207 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc-----------------------------------------
Confidence 478999999999999999999999999999997543100
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVv 160 (446)
...++.+++.+..++.|++ ++++++|++++..+ +...|++.+. .++..++.+|.||+
T Consensus 208 -------------------~~~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vv~ 265 (464)
T 2eq6_A 208 -------------------GDPETAALLRRALEKEGIR--VRTKTKAVGYEKKK-DGLHVRLEPAEGGEGEEVVVDKVLV 265 (464)
T ss_dssp -------------------SCHHHHHHHHHHHHHTTCE--EECSEEEEEEEEET-TEEEEEEEETTCCSCEEEEESEEEE
T ss_pred -------------------cCHHHHHHHHHHHHhcCCE--EEcCCEEEEEEEeC-CEEEEEEeecCCCceeEEEcCEEEE
Confidence 0157788888888899998 99999999998765 5567776522 13334789999999
Q ss_pred ccCCCCCCccCC
Q 013303 161 CNGHFSVPRLAQ 172 (446)
Q Consensus 161 AtG~~s~p~~p~ 172 (446)
|+| ..|+.+.
T Consensus 266 a~G--~~p~~~~ 275 (464)
T 2eq6_A 266 AVG--RKPRTEG 275 (464)
T ss_dssp CSC--EEESCTT
T ss_pred CCC--cccCCCC
Confidence 999 6676653
No 157
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=98.82 E-value=3.4e-09 Score=104.18 Aligned_cols=60 Identities=12% Similarity=0.039 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEeCeEEE---------EEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVL---------NARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~---------~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
.....+...|.+.+++.|+. +.++++|+ ++...+ +.|.|.+.+ .++.+|.||+|+|.++.
T Consensus 169 v~~~~l~~~L~~~~~~~Gv~--i~~~~~v~~~~g~~~~~~i~~~~-~~v~v~~~~-----g~i~a~~VV~A~G~~s~ 237 (405)
T 3c4n_A 169 YRPGSLALLAAQQAIGQGAG--LLLNTRAELVPGGVRLHRLTVTN-THQIVVHET-----RQIRAGVIIVAAGAAGP 237 (405)
T ss_dssp ECHHHHHHHHHHHHHTTTCE--EECSCEEEEETTEEEEECBCC--------CBCC-----EEEEEEEEEECCGGGHH
T ss_pred EcHHHHHHHHHHHHHHCCCE--EEcCCEEEeccccccccceEeeC-CeEEEEECC-----cEEECCEEEECCCccHH
Confidence 34577888899988888887 88999999 776554 556554422 16899999999997653
No 158
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=98.80 E-value=4.9e-09 Score=106.28 Aligned_cols=60 Identities=27% Similarity=0.331 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc--eEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK--WKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~--~~v~~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
.++..+.+.|.+.+.+.|+. ++++ +|+++...+ +. +.|++.++. ++.+|.||.|+|.+|.
T Consensus 170 ~~~~~l~~~L~~~a~~~gv~--~~~~-~v~~i~~~~-~~~~~~v~~~~g~----~~~ad~vV~A~G~~S~ 231 (511)
T 2weu_A 170 FDADEVARYLSEYAIARGVR--HVVD-DVQHVGQDE-RGWISGVHTKQHG----EISGDLFVDCTGFRGL 231 (511)
T ss_dssp ECHHHHHHHHHHHHHHTTCE--EEEC-CEEEEEECT-TSCEEEEEESSSC----EEECSEEEECCGGGCC
T ss_pred EcHHHHHHHHHHHHHHCCCE--EEEC-eEeEEEEcC-CCCEEEEEECCCC----EEEcCEEEECCCcchH
Confidence 57789999999999998887 8889 999998755 34 445554432 6899999999997654
No 159
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=98.80 E-value=3.8e-08 Score=101.45 Aligned_cols=65 Identities=11% Similarity=0.106 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEe-CCCceEEEEEcEEEEccCCCCCC
Q 013303 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRK-KDDVVEEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~-~~~~~~~~~~d~VVvAtG~~s~p 168 (446)
++..+...|.+.+.+.++. +++++.|+++...+ +. .-|.+.+ .+++...+.++.||+|||.++..
T Consensus 153 tG~~l~~~L~~~~~~~gv~--i~~~~~v~~Li~~~-g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~ 219 (621)
T 2h88_A 153 TGHSLLHTLYGRSLRYDTS--YFVEYFALDLLMEN-GECRGVIALCIEDGTIHRFRAKNTVIATGGYGRT 219 (621)
T ss_dssp HHHHHHHHHHHHHTTSCCE--EEETEEEEEEEEET-TEEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred CHHHHHHHHHHHHHhCCCE--EEEceEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCccccc
Confidence 3568888888888888887 99999999998654 43 3355544 34455678999999999987653
No 160
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=98.80 E-value=2.2e-08 Score=99.93 Aligned_cols=102 Identities=25% Similarity=0.264 Sum_probs=80.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||++|+.+|..|++.|.+|+++|+.+.+.
T Consensus 167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l------------------------------------------- 203 (455)
T 2yqu_A 167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRIL------------------------------------------- 203 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccc-------------------------------------------
Confidence 4789999999999999999999999999999875330
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
|. ...++.+.+.+.+++.|++ ++++++|++++..+ +.+.+++.++ .++.+|.||+|
T Consensus 204 --~~---------------~~~~~~~~l~~~l~~~Gv~--i~~~~~V~~i~~~~-~~v~v~~~~g----~~i~~D~vv~A 259 (455)
T 2yqu_A 204 --PT---------------MDLEVSRAAERVFKKQGLT--IRTGVRVTAVVPEA-KGARVELEGG----EVLEADRVLVA 259 (455)
T ss_dssp --TT---------------SCHHHHHHHHHHHHHHTCE--EECSCCEEEEEEET-TEEEEEETTS----CEEEESEEEEC
T ss_pred --cc---------------cCHHHHHHHHHHHHHCCCE--EEECCEEEEEEEeC-CEEEEEECCC----eEEEcCEEEEC
Confidence 00 0146778888888888988 99999999998765 5566655433 27899999999
Q ss_pred cCCCCCCccCC
Q 013303 162 NGHFSVPRLAQ 172 (446)
Q Consensus 162 tG~~s~p~~p~ 172 (446)
+| ..|+.+.
T Consensus 260 ~G--~~p~~~~ 268 (455)
T 2yqu_A 260 VG--RRPYTEG 268 (455)
T ss_dssp SC--EEECCTT
T ss_pred cC--CCcCCCC
Confidence 99 6666543
No 161
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=98.79 E-value=6.9e-09 Score=105.88 Aligned_cols=61 Identities=21% Similarity=0.299 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
.++.++.++|.+.+++.|+. ++++ +|+++...+++. +.|++.++ .++.+|.||+|+|.++.
T Consensus 162 i~~~~l~~~L~~~a~~~gv~--~~~~-~v~~i~~~~~g~~~~v~~~~g----~~i~ad~vV~A~G~~s~ 223 (538)
T 2aqj_A 162 FDAHLVADFLKRWAVERGVN--RVVD-EVVDVRLNNRGYISNLLTKEG----RTLEADLFIDCSGMRGL 223 (538)
T ss_dssp ECHHHHHHHHHHHHHHTTCE--EEEC-CEEEEEECTTSCEEEEEETTS----CEECCSEEEECCGGGCC
T ss_pred EeHHHHHHHHHHHHHHCCCE--EEEe-eEeEEEEcCCCcEEEEEECCC----cEEEeCEEEECCCCchh
Confidence 46689999999999998887 8888 899998765232 45555433 26899999999997654
No 162
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=98.78 E-value=1e-08 Score=105.40 Aligned_cols=64 Identities=11% Similarity=-0.074 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEe-CCCceEEEEEcEEEEccCCCCC
Q 013303 102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 102 ~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~-~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
+..+.+.|.+.+.+.|+. |++++.|+++..++++. +-|.+.+ .+++...+.++.||+|||.++.
T Consensus 142 g~~l~~~L~~~~~~~gv~--i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~ 207 (588)
T 2wdq_A 142 GHALLHTLYQQNLKNHTT--IFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGR 207 (588)
T ss_dssp HHHHHHHHHHHHHHTTCE--EEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred HHHHHHHHHHHHHhCCCE--EEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCcc
Confidence 478888899999888887 99999999998752243 3455554 3345567899999999998664
No 163
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=98.78 E-value=2.6e-08 Score=97.06 Aligned_cols=101 Identities=23% Similarity=0.223 Sum_probs=80.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------------------------------- 183 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPG----------------------------------------- 183 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhc-----------------------------------------
Confidence 478999999999999999999999999999986532100
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
+ ...++.+.+.+..++.|+. ++++++|.+++..+ +.+.|++.++. ++.+|.||+|
T Consensus 184 -----------------~-~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~g~----~i~~d~vv~a 238 (384)
T 2v3a_A 184 -----------------L-LHPAAAKAVQAGLEGLGVR--FHLGPVLASLKKAG-EGLEAHLSDGE----VIPCDLVVSA 238 (384)
T ss_dssp -----------------T-SCHHHHHHHHHHHHTTTCE--EEESCCEEEEEEET-TEEEEEETTSC----EEEESEEEEC
T ss_pred -----------------c-cCHHHHHHHHHHHHHcCCE--EEeCCEEEEEEecC-CEEEEEECCCC----EEECCEEEEC
Confidence 0 0156778888888888988 99999999998765 55667665442 7899999999
Q ss_pred cCCCCCCcc
Q 013303 162 NGHFSVPRL 170 (446)
Q Consensus 162 tG~~s~p~~ 170 (446)
+| ..|+.
T Consensus 239 ~G--~~p~~ 245 (384)
T 2v3a_A 239 VG--LRPRT 245 (384)
T ss_dssp SC--EEECC
T ss_pred cC--CCcCH
Confidence 99 55554
No 164
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=98.77 E-value=2.4e-08 Score=102.33 Aligned_cols=65 Identities=17% Similarity=0.046 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEEccCCCCC
Q 013303 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVvAtG~~s~ 167 (446)
....+...+...+.+.|+. +.++++|+++...++..|.|++.+. +++..++.+|.||+|+|.++.
T Consensus 186 ~~~~l~~~l~~~a~~~Ga~--i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~ 251 (571)
T 2rgh_A 186 NDARLVIDNIKKAAEDGAY--LVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVD 251 (571)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHH
T ss_pred chHHHHHHHHHHHHHcCCe--EEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHH
Confidence 3455666667778888987 9999999999887623366777653 233447999999999998653
No 165
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.76 E-value=7.8e-08 Score=95.92 Aligned_cols=105 Identities=19% Similarity=0.231 Sum_probs=82.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+.+..
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------ 207 (455)
T 1ebd_A 170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS------------------------------------------ 207 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc------------------------------------------
Confidence 47899999999999999999999999999999754310
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
. ...++.+++.+..++.|+. ++++++|.+++..+ +...+++.. .++..++.+|.||+|
T Consensus 208 ----------------~--~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~-~g~~~~~~~D~vv~a 265 (455)
T 1ebd_A 208 ----------------G--FEKQMAAIIKKRLKKKGVE--VVTNALAKGAEERE-DGVTVTYEA-NGETKTIDADYVLVT 265 (455)
T ss_dssp ----------------T--SCHHHHHHHHHHHHHTTCE--EEESEEEEEEEEET-TEEEEEEEE-TTEEEEEEESEEEEC
T ss_pred ----------------c--cCHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeC-CeEEEEEEe-CCceeEEEcCEEEEC
Confidence 0 0156778888888899998 99999999998765 456666653 222357899999999
Q ss_pred cCCCCCCccCC
Q 013303 162 NGHFSVPRLAQ 172 (446)
Q Consensus 162 tG~~s~p~~p~ 172 (446)
+| ..|+.+.
T Consensus 266 ~G--~~p~~~~ 274 (455)
T 1ebd_A 266 VG--RRPNTDE 274 (455)
T ss_dssp SC--EEESCSS
T ss_pred cC--CCcccCc
Confidence 99 6676543
No 166
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=98.76 E-value=3.9e-08 Score=97.96 Aligned_cols=102 Identities=17% Similarity=0.164 Sum_probs=81.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+.+..
T Consensus 167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------ 204 (450)
T 1ges_A 167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP------------------------------------------ 204 (450)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh------------------------------------------
Confidence 47899999999999999999999999999998754310
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.+ ..++.+.+.+.+++.|++ ++++++|.+++..+++...|++.++. ++.+|.||+|
T Consensus 205 ----------------~~--~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~g~----~i~~D~vv~a 260 (450)
T 1ges_A 205 ----------------SF--DPMISETLVEVMNAEGPQ--LHTNAIPKAVVKNTDGSLTLELEDGR----SETVDCLIWA 260 (450)
T ss_dssp ----------------TS--CHHHHHHHHHHHHHHSCE--EECSCCEEEEEECTTSCEEEEETTSC----EEEESEEEEC
T ss_pred ----------------hh--hHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCCcEEEEEECCCc----EEEcCEEEEC
Confidence 00 146778888888888998 99999999998765234677665443 7899999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| ..|+..
T Consensus 261 ~G--~~p~~~ 268 (450)
T 1ges_A 261 IG--REPAND 268 (450)
T ss_dssp SC--EEESCT
T ss_pred CC--CCcCCC
Confidence 99 667664
No 167
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=98.74 E-value=2e-08 Score=107.81 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCce-EEEEEeCCCceEEEEEcEEEEccCCCC
Q 013303 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRKKDDVVEEETFDAVVVCNGHFS 166 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~-~v~~~~~~~~~~~~~~d~VVvAtG~~s 166 (446)
.....+...|.+.+++.|+. ++++++|++|...+ +.+ .|.+.++ ++.+|.||+|+|.++
T Consensus 148 v~p~~l~~~L~~~a~~~Gv~--i~~~t~V~~i~~~~-~~v~~V~t~~G-----~i~Ad~VV~AaG~~s 207 (830)
T 1pj5_A 148 ASAARAVQLLIKRTESAGVT--YRGSTTVTGIEQSG-GRVTGVQTADG-----VIPADIVVSCAGFWG 207 (830)
T ss_dssp ECHHHHHHHHHHHHHHTTCE--EECSCCEEEEEEET-TEEEEEEETTE-----EEECSEEEECCGGGH
T ss_pred EcHHHHHHHHHHHHHHcCCE--EECCceEEEEEEeC-CEEEEEEECCc-----EEECCEEEECCccch
Confidence 35678889999999999987 99999999998765 443 4554322 689999999999865
No 168
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=98.74 E-value=7.4e-08 Score=96.70 Aligned_cols=105 Identities=29% Similarity=0.419 Sum_probs=82.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...+
T Consensus 183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~---------------------------------------- 222 (478)
T 1v59_A 183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASM---------------------------------------- 222 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSS----------------------------------------
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccccc----------------------------------------
Confidence 4789999999999999999999999999999976431100
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEE--cCCCceEEEEEeC-CCceEEEEEcEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL--VESNKWKVKSRKK-DDVVEEETFDAV 158 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~--~~~~~~~v~~~~~-~~~~~~~~~d~V 158 (446)
..++.+++.+..++.|++ ++++++|.+++. .+ +.+.|++.+. .++..++.+|.|
T Consensus 223 --------------------~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~-~~~~v~~~~~~~g~~~~~~~D~v 279 (478)
T 1v59_A 223 --------------------DGEVAKATQKFLKKQGLD--FKLSTKVISAKRNDDK-NVVEIVVEDTKTNKQENLEAEVL 279 (478)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCE--EECSEEEEEEEEETTT-TEEEEEEEETTTTEEEEEEESEE
T ss_pred --------------------CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEecCC-CeEEEEEEEcCCCCceEEECCEE
Confidence 157788888889999998 999999999987 33 4566776531 122357899999
Q ss_pred EEccCCCCCCccC
Q 013303 159 VVCNGHFSVPRLA 171 (446)
Q Consensus 159 VvAtG~~s~p~~p 171 (446)
|+|+| ..|+..
T Consensus 280 v~a~G--~~p~~~ 290 (478)
T 1v59_A 280 LVAVG--RRPYIA 290 (478)
T ss_dssp EECSC--EEECCT
T ss_pred EECCC--CCcCCC
Confidence 99999 667654
No 169
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=98.71 E-value=3.8e-08 Score=97.97 Aligned_cols=104 Identities=22% Similarity=0.201 Sum_probs=79.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||++|+.+|..|++.|.+|+++|+.+.+...
T Consensus 149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 187 (447)
T 1nhp_A 149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV----------------------------------------- 187 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc-----------------------------------------
Confidence 478999999999999999999999999999997533110
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
. ...++.+++.+.+++.|++ ++++++|.+++..+ ..+.+.+ ++ .++.+|.||+|
T Consensus 188 ----------------~--~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~v~~v~~-~~----~~i~~d~vi~a 241 (447)
T 1nhp_A 188 ----------------Y--LDKEFTDVLTEEMEANNIT--IATGETVERYEGDG-RVQKVVT-DK----NAYDADLVVVA 241 (447)
T ss_dssp ----------------T--CCHHHHHHHHHHHHTTTEE--EEESCCEEEEECSS-BCCEEEE-SS----CEEECSEEEEC
T ss_pred ----------------c--CCHHHHHHHHHHHHhCCCE--EEcCCEEEEEEccC-cEEEEEE-CC----CEEECCEEEEC
Confidence 0 0156788888888888988 99999999998642 3344554 22 26899999999
Q ss_pred cCCCCCCccCCCC
Q 013303 162 NGHFSVPRLAQVP 174 (446)
Q Consensus 162 tG~~s~p~~p~i~ 174 (446)
+| ..|+.+.++
T Consensus 242 ~G--~~p~~~~~~ 252 (447)
T 1nhp_A 242 VG--VRPNTAWLK 252 (447)
T ss_dssp SC--EEESCGGGT
T ss_pred cC--CCCChHHHH
Confidence 99 667655433
No 170
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=98.71 E-value=8.5e-08 Score=98.76 Aligned_cols=65 Identities=14% Similarity=0.067 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCCCc-eEEEEEe-CCCceEEEEEcEEEEccCCCCCCc
Q 013303 102 HEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNK-WKVKSRK-KDDVVEEETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 102 ~~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~-~~v~~~~-~~~~~~~~~~d~VVvAtG~~s~p~ 169 (446)
+..+...|.+.+.+.+ +. +++++.|+++...+ +. .-|.+.+ .+++...+.++.||+|||.++..+
T Consensus 133 g~~l~~~L~~~~~~~gnv~--i~~~~~v~~l~~~~-g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~~ 200 (602)
T 1kf6_A 133 GFHMLHTLFQTSLQFPQIQ--RFDEHFVLDILVDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY 200 (602)
T ss_dssp HHHHHHHHHHHHTTCTTEE--EEETEEEEEEEEET-TEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGS
T ss_pred HHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEEeC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCCCcccc
Confidence 5678888888888777 66 89999999998765 42 2344443 334445789999999999876544
No 171
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=98.70 E-value=1.9e-08 Score=102.84 Aligned_cols=60 Identities=23% Similarity=0.203 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCc--eEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303 100 PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNK--WKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~--~~v~~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
..+..+.++|.+.+++. |+. ++++ +|+++...+ +. +.|++.++ .++.+|.||+|+|.++.
T Consensus 191 ~~~~~l~~~L~~~~~~~~Gv~--i~~~-~V~~i~~~~-~g~~~~v~~~~G----~~i~ad~vI~A~G~~S~ 253 (550)
T 2e4g_A 191 FDAHLVADFLRRFATEKLGVR--HVED-RVEHVQRDA-NGNIESVRTATG----RVFDADLFVDCSGFRGL 253 (550)
T ss_dssp ECHHHHHHHHHHHHHHHSCCE--EEEC-CEEEEEECT-TSCEEEEEETTS----CEEECSEEEECCGGGCC
T ss_pred EcHHHHHHHHHHHHHhcCCcE--EEEC-eEeEEEEcC-CCCEEEEEECCC----CEEECCEEEECCCCchh
Confidence 57789999999999998 988 8899 999998755 34 34444333 26899999999996553
No 172
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=98.70 E-value=1.7e-08 Score=102.56 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCCce--EEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303 100 PGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKW--KVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~--~v~~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
.++..+.++|.+.+++ .|+. ++++ +|+++...+ +.+ .|++.++. ++.+|.||.|+|.+|.
T Consensus 172 ~~r~~l~~~L~~~a~~~~Gv~--i~~~-~v~~i~~~~-~g~~~~v~~~~g~----~i~ad~vV~AdG~~S~ 234 (526)
T 2pyx_A 172 LNAAKFSQLLTEHCTQKLGVT--HIRD-HVSQIINNQ-HGDIEKLITKQNG----EISGQLFIDCTGAKSL 234 (526)
T ss_dssp ECHHHHHHHHHHHHHHTSCCE--EEEC-CEEEEEECT-TSCEEEEEESSSC----EEECSEEEECSGGGCC
T ss_pred EcHHHHHHHHHHHHHhcCCCE--EEEe-EEEEEEecC-CCcEEEEEECCCC----EEEcCEEEECCCcchH
Confidence 4678999999999998 8887 8888 699998765 344 34443322 5899999999997654
No 173
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=98.69 E-value=1.5e-07 Score=94.71 Aligned_cols=105 Identities=26% Similarity=0.326 Sum_probs=81.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 212 (492)
T 3ic9_A 174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL----------------------------------------- 212 (492)
T ss_dssp CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC-----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-----------------------------------------
Confidence 478999999999999999999999999999997643110
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
-..++.+.+.+..++. +. ++++++|.+++..+ +...+++.+.+++..++.+|.||+|
T Consensus 213 -------------------~d~~~~~~l~~~l~~~-V~--i~~~~~v~~i~~~~-~~v~v~~~~~~G~~~~i~~D~Vi~a 269 (492)
T 3ic9_A 213 -------------------QDEEMKRYAEKTFNEE-FY--FDAKARVISTIEKE-DAVEVIYFDKSGQKTTESFQYVLAA 269 (492)
T ss_dssp -------------------CCHHHHHHHHHHHHTT-SE--EETTCEEEEEEECS-SSEEEEEECTTCCEEEEEESEEEEC
T ss_pred -------------------CCHHHHHHHHHHHhhC-cE--EEECCEEEEEEEcC-CEEEEEEEeCCCceEEEECCEEEEe
Confidence 0146677777777665 66 89999999998766 5666776643344457999999999
Q ss_pred cCCCCCCccCC
Q 013303 162 NGHFSVPRLAQ 172 (446)
Q Consensus 162 tG~~s~p~~p~ 172 (446)
+| ..|+...
T Consensus 270 ~G--~~p~~~~ 278 (492)
T 3ic9_A 270 TG--RKANVDK 278 (492)
T ss_dssp SC--CEESCSS
T ss_pred eC--CccCCCC
Confidence 99 6776554
No 174
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=98.69 E-value=7.2e-08 Score=96.34 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=56.4
Q ss_pred hCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEEccCCCCCCc--cCCCCCCCCCCccEEEeeecCCC
Q 013303 116 FGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVPR--LAQVPGIDSWPGKQMHSHNYRIP 192 (446)
Q Consensus 116 ~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVvAtG~~s~p~--~p~i~G~~~~~g~~~hs~~~~~~ 192 (446)
.++. ++++++|++++..+ +.|.|++.+. +++..++.+|.||+||| ..|+ .+.+.++....|.+....+++..
T Consensus 329 ~~v~--i~~~~~v~~v~~~~-~~~~v~~~~~~~g~~~~~~~D~Vv~AtG--~~p~~~~~~l~~l~~~~g~i~v~~~~~~~ 403 (463)
T 3s5w_A 329 PRHA--FRCMTTVERATATA-QGIELALRDAGSGELSVETYDAVILATG--YERQLHRQLLEPLAEYLGDHEIGRDYRLQ 403 (463)
T ss_dssp CCSE--EETTEEEEEEEEET-TEEEEEEEETTTCCEEEEEESEEEECCC--EECCC-CTTTGGGGGGBC--CCCTTSBCC
T ss_pred CCeE--EEeCCEEEEEEecC-CEEEEEEEEcCCCCeEEEECCEEEEeeC--CCCCCccchhHHHHHHhCCcccCcccccc
Confidence 3555 89999999998876 7899998864 34556799999999999 5665 44444443322555555555533
Q ss_pred CC-CCCCEEEEEecC
Q 013303 193 NP-FQDQVVILIGHY 206 (446)
Q Consensus 193 ~~-~~~k~VvVVG~G 206 (446)
.. ....+|-++|..
T Consensus 404 ~~~~~~~~Ifa~G~~ 418 (463)
T 3s5w_A 404 TDERCKVAIYAQGFS 418 (463)
T ss_dssp BCTTBCSEEEESSCC
T ss_pred cCCCCCCeEEEcCCC
Confidence 21 124578888853
No 175
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=98.69 E-value=1.4e-07 Score=94.40 Aligned_cols=105 Identities=23% Similarity=0.240 Sum_probs=81.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------ 211 (468)
T 2qae_A 174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP------------------------------------------ 211 (468)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------------
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc------------------------------------------
Confidence 46899999999999999999999999999998754310
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHH-HHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFA-REFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~-~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv 160 (446)
. -..++.+++.+.. ++.|++ ++++++|.+++..+ +...+++...+++..++.+|.||+
T Consensus 212 ----------------~--~d~~~~~~l~~~l~~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~~~g~~~~i~~D~vv~ 270 (468)
T 2qae_A 212 ----------------T--LDEDVTNALVGALAKNEKMK--FMTSTKVVGGTNNG-DSVSLEVEGKNGKRETVTCEALLV 270 (468)
T ss_dssp ----------------T--SCHHHHHHHHHHHHHHTCCE--EECSCEEEEEEECS-SSEEEEEECC---EEEEEESEEEE
T ss_pred ----------------c--CCHHHHHHHHHHHhhcCCcE--EEeCCEEEEEEEcC-CeEEEEEEcCCCceEEEECCEEEE
Confidence 0 0156778888888 888998 99999999998765 557777652222234789999999
Q ss_pred ccCCCCCCccC
Q 013303 161 CNGHFSVPRLA 171 (446)
Q Consensus 161 AtG~~s~p~~p 171 (446)
|+| ..|+..
T Consensus 271 a~G--~~p~~~ 279 (468)
T 2qae_A 271 SVG--RRPFTG 279 (468)
T ss_dssp CSC--EEECCT
T ss_pred CCC--cccCCC
Confidence 999 666654
No 176
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=98.68 E-value=1.7e-07 Score=94.41 Aligned_cols=106 Identities=25% Similarity=0.286 Sum_probs=84.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 236 (491)
T 3urh_A 198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG----------------------------------------- 236 (491)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS-----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc-----------------------------------------
Confidence 468999999999999999999999999999987643110
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VVv 160 (446)
-..++.+.+.+..++.|+. ++++++|.+++..+ +...+.+.+.. ++..++.+|.||+
T Consensus 237 -------------------~d~~~~~~l~~~l~~~gV~--v~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~Vi~ 294 (491)
T 3urh_A 237 -------------------MDGEVAKQLQRMLTKQGID--FKLGAKVTGAVKSG-DGAKVTFEPVKGGEATTLDAEVVLI 294 (491)
T ss_dssp -------------------SCHHHHHHHHHHHHHTTCE--EECSEEEEEEEEET-TEEEEEEEETTSCCCEEEEESEEEE
T ss_pred -------------------CCHHHHHHHHHHHHhCCCE--EEECCeEEEEEEeC-CEEEEEEEecCCCceEEEEcCEEEE
Confidence 0157788888888888998 99999999998876 66777777632 3345789999999
Q ss_pred ccCCCCCCccCC
Q 013303 161 CNGHFSVPRLAQ 172 (446)
Q Consensus 161 AtG~~s~p~~p~ 172 (446)
|+| ..|+...
T Consensus 295 a~G--~~p~~~~ 304 (491)
T 3urh_A 295 ATG--RKPSTDG 304 (491)
T ss_dssp CCC--CEECCTT
T ss_pred eeC--CccCCCc
Confidence 999 6666543
No 177
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.67 E-value=1.3e-07 Score=95.47 Aligned_cols=103 Identities=17% Similarity=0.371 Sum_probs=80.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------ 213 (500)
T 1onf_A 176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR------------------------------------------ 213 (500)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT------------------------------------------
T ss_pred CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc------------------------------------------
Confidence 36899999999999999999999999999998764310
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
. -..++.+.+.+..++.|++ ++++++|.+++..+++...|++.++. . .+.+|.||+|
T Consensus 214 ----------------~--~d~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~~~~v~~~~g~--~-~~~~D~vi~a 270 (500)
T 1onf_A 214 ----------------K--FDESVINVLENDMKKNNIN--IVTFADVVEIKKVSDKNLSIHLSDGR--I-YEHFDHVIYC 270 (500)
T ss_dssp ----------------T--SCHHHHHHHHHHHHHTTCE--EECSCCEEEEEESSTTCEEEEETTSC--E-EEEESEEEEC
T ss_pred ----------------c--cchhhHHHHHHHHHhCCCE--EEECCEEEEEEEcCCceEEEEECCCc--E-EEECCEEEEC
Confidence 0 0156778888888999998 99999999998764344666665432 1 3899999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| ..|+..
T Consensus 271 ~G--~~p~~~ 278 (500)
T 1onf_A 271 VG--RSPDTE 278 (500)
T ss_dssp CC--BCCTTT
T ss_pred CC--CCcCCC
Confidence 99 677654
No 178
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.67 E-value=1.2e-07 Score=94.96 Aligned_cols=105 Identities=24% Similarity=0.273 Sum_probs=82.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------ 214 (470)
T 1dxl_A 177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP------------------------------------------ 214 (470)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST------------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc------------------------------------------
Confidence 47899999999999999999999999999999754310
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVv 160 (446)
. ...++.+++.+..++.|+. ++++++|.+++..+ +...|++.+. +++..++.+|.||+
T Consensus 215 ----------------~--~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~~~~D~vv~ 273 (470)
T 1dxl_A 215 ----------------T--MDAEIRKQFQRSLEKQGMK--FKLKTKVVGVDTSG-DGVKLTVEPSAGGEQTIIEADVVLV 273 (470)
T ss_dssp ----------------T--SCHHHHHHHHHHHHHSSCC--EECSEEEEEEECSS-SSEEEEEEESSSCCCEEEEESEEEC
T ss_pred ----------------c--ccHHHHHHHHHHHHHcCCE--EEeCCEEEEEEEcC-CeEEEEEEecCCCcceEEECCEEEE
Confidence 0 0157788888989999998 99999999998755 4566776532 22234789999999
Q ss_pred ccCCCCCCccC
Q 013303 161 CNGHFSVPRLA 171 (446)
Q Consensus 161 AtG~~s~p~~p 171 (446)
|+| ..|+..
T Consensus 274 a~G--~~p~~~ 282 (470)
T 1dxl_A 274 SAG--RTPFTS 282 (470)
T ss_dssp CCC--EEECCT
T ss_pred CCC--CCcCCC
Confidence 999 666654
No 179
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=98.66 E-value=4.1e-08 Score=101.90 Aligned_cols=63 Identities=13% Similarity=0.169 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEe-CCCceEEEEEcEEEEccCCCCC
Q 013303 102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 102 ~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~-~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
+..+...|.+.+.+.|+. +++++.|+++...+ +. .-|.+.+ .+++...+.++.||+|||.++.
T Consensus 157 G~~l~~~L~~~a~~~gv~--i~~~~~v~~L~~~~-g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~ 221 (660)
T 2bs2_A 157 GHTMLFAVANECLKLGVS--IQDRKEAIALIHQD-GKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGR 221 (660)
T ss_dssp HHHHHHHHHHHHHHHTCE--EECSEEEEEEEEET-TEEEEEEEEETTTCCEEEEECSEEEECCCCCGG
T ss_pred HHHHHHHHHHHHHhCCCE--EEECcEEEEEEecC-CEEEEEEEEECCCCcEEEEEcCEEEEccCcchh
Confidence 568888999999888988 99999999997654 43 2344443 3344557899999999998664
No 180
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=98.65 E-value=2.3e-07 Score=92.68 Aligned_cols=105 Identities=22% Similarity=0.243 Sum_probs=82.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------ 208 (464)
T 2a8x_A 171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP------------------------------------------ 208 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------------
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc------------------------------------------
Confidence 47899999999999999999999999999999764310
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
. -..++.+++.+..++.|+. ++++++|.+++..+ +...+.+.+ +++..++.+|.||+|
T Consensus 209 ----------------~--~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~-~g~~~~~~~D~vv~a 266 (464)
T 2a8x_A 209 ----------------N--EDADVSKEIEKQFKKLGVT--ILTATKVESIADGG-SQVTVTVTK-DGVAQELKAEKVLQA 266 (464)
T ss_dssp ----------------T--SCHHHHHHHHHHHHHHTCE--EECSCEEEEEEECS-SCEEEEEES-SSCEEEEEESEEEEC
T ss_pred ----------------c--cCHHHHHHHHHHHHHcCCE--EEeCcEEEEEEEcC-CeEEEEEEc-CCceEEEEcCEEEEC
Confidence 0 0156778888888899998 99999999998765 456666652 222357899999999
Q ss_pred cCCCCCCccCC
Q 013303 162 NGHFSVPRLAQ 172 (446)
Q Consensus 162 tG~~s~p~~p~ 172 (446)
+| ..|+...
T Consensus 267 ~G--~~p~~~~ 275 (464)
T 2a8x_A 267 IG--FAPNVEG 275 (464)
T ss_dssp SC--EEECCSS
T ss_pred CC--CCccCCC
Confidence 99 6676543
No 181
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.64 E-value=6e-08 Score=96.82 Aligned_cols=102 Identities=22% Similarity=0.236 Sum_probs=78.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||++|+.+|..|++.|.+|+++|+.+.+...
T Consensus 171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 209 (458)
T 1lvl_A 171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT----------------------------------------- 209 (458)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-----------------------------------------
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc-----------------------------------------
Confidence 478999999999999999999999999999997643110
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
...++.+++.+..++.|++ ++++++|.+++. + + ..++ ..+++..++.+|.||+|
T Consensus 210 -------------------~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~-~-~-v~v~--~~~G~~~~i~~D~vv~a 263 (458)
T 1lvl_A 210 -------------------YDSELTAPVAESLKKLGIA--LHLGHSVEGYEN-G-C-LLAN--DGKGGQLRLEADRVLVA 263 (458)
T ss_dssp -------------------SCHHHHHHHHHHHHHHTCE--EETTCEEEEEET-T-E-EEEE--CSSSCCCEECCSCEEEC
T ss_pred -------------------cCHHHHHHHHHHHHHCCCE--EEECCEEEEEEe-C-C-EEEE--ECCCceEEEECCEEEEC
Confidence 0146778888888888998 999999999986 3 3 3333 22232247899999999
Q ss_pred cCCCCCCccCC
Q 013303 162 NGHFSVPRLAQ 172 (446)
Q Consensus 162 tG~~s~p~~p~ 172 (446)
+| ..|+.+.
T Consensus 264 ~G--~~p~~~~ 272 (458)
T 1lvl_A 264 VG--RRPRTKG 272 (458)
T ss_dssp CC--EEECCSS
T ss_pred cC--CCcCCCC
Confidence 99 6777653
No 182
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=98.64 E-value=3e-07 Score=92.21 Aligned_cols=106 Identities=27% Similarity=0.345 Sum_probs=81.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...
T Consensus 178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 216 (474)
T 1zmd_A 178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGV----------------------------------------- 216 (474)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCS-----------------------------------------
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCc-----------------------------------------
Confidence 468999999999999999999999999999997643100
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEeC-CCceEEEEEcEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKK-DDVVEEETFDAVV 159 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~-~~~~~~~~~d~VV 159 (446)
.+ ..++.+++.+..++.|+. ++++++|.+++..+ +. ..+++.+. .++..++.+|.||
T Consensus 217 ----------------~~--~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~i~~D~vv 275 (474)
T 1zmd_A 217 ----------------GI--DMEISKNFQRILQKQGFK--FKLNTKVTGATKKS-DGKIDVSIEAASGGKAEVITCDVLL 275 (474)
T ss_dssp ----------------SC--CHHHHHHHHHHHHHTTCE--EECSEEEEEEEECT-TSCEEEEEEETTSCCCEEEEESEEE
T ss_pred ----------------cc--CHHHHHHHHHHHHHCCCE--EEeCceEEEEEEcC-CceEEEEEEecCCCCceEEEcCEEE
Confidence 00 156778888889999998 99999999998765 44 66765431 1123478999999
Q ss_pred EccCCCCCCccC
Q 013303 160 VCNGHFSVPRLA 171 (446)
Q Consensus 160 vAtG~~s~p~~p 171 (446)
+|+| ..|+..
T Consensus 276 ~a~G--~~p~~~ 285 (474)
T 1zmd_A 276 VCIG--RRPFTK 285 (474)
T ss_dssp ECSC--EEECCT
T ss_pred ECcC--CCcCCC
Confidence 9999 666654
No 183
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=98.63 E-value=1.3e-07 Score=94.59 Aligned_cols=102 Identities=21% Similarity=0.225 Sum_probs=79.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~------------------------------------------ 203 (463)
T 2r9z_A 166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF------------------------------------------ 203 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc------------------------------------------
Confidence 46899999999999999999999999999998753310
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.+ ..++.+.+.+..++.|+. ++++++|.+++..+ +...|++.++ +. ++.+|.||+|
T Consensus 204 ----------------~~--~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~G--~~-~i~~D~vv~a 259 (463)
T 2r9z_A 204 ----------------QF--DPLLSATLAENMHAQGIE--THLEFAVAALERDA-QGTTLVAQDG--TR-LEGFDSVIWA 259 (463)
T ss_dssp ----------------TS--CHHHHHHHHHHHHHTTCE--EESSCCEEEEEEET-TEEEEEETTC--CE-EEEESEEEEC
T ss_pred ----------------cc--CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeC-CeEEEEEeCC--cE-EEEcCEEEEC
Confidence 00 146677888888888988 99999999998765 4466665433 22 6899999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| ..|+..
T Consensus 260 ~G--~~p~~~ 267 (463)
T 2r9z_A 260 VG--RAPNTR 267 (463)
T ss_dssp SC--EEESCT
T ss_pred CC--CCcCCC
Confidence 99 667664
No 184
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=98.63 E-value=1e-08 Score=104.29 Aligned_cols=64 Identities=20% Similarity=0.109 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCC------c-eEEEEEe-CCCceEEEEEcEEEEccCCCCC
Q 013303 102 HEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESN------K-WKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 102 ~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~------~-~~v~~~~-~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
+..+.+.|.+.+++ .++. +++++.|+++...+++ . +-|.+.+ .+++...+.++.||+|||.++.
T Consensus 137 g~~l~~~L~~~~~~~~gv~--i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 209 (540)
T 1chu_A 137 GREVETTLVSKALNHPNIR--VLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASK 209 (540)
T ss_dssp -----CCCHHHHHHCTTEE--EECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGG
T ss_pred HHHHHHHHHHHHHcCCCCE--EEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence 34666777777877 6777 9999999999873323 3 3355654 2344567899999999997663
No 185
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=98.63 E-value=6.7e-08 Score=93.18 Aligned_cols=43 Identities=40% Similarity=0.652 Sum_probs=40.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC-CCcCceeeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQVGGSWIYT 44 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~-~~~GG~w~~~ 44 (446)
.+||+|||||++||+||..|.+.|++|+|||++ +.+||.|...
T Consensus 44 ~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~ 87 (376)
T 2e1m_A 44 PKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTF 87 (376)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEE
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeee
Confidence 479999999999999999999999999999999 9999988753
No 186
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=98.63 E-value=2.4e-07 Score=92.94 Aligned_cols=104 Identities=25% Similarity=0.328 Sum_probs=83.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------ 217 (476)
T 3lad_A 180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP------------------------------------------ 217 (476)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc------------------------------------------
Confidence 46899999999999999999999999999999753310
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
. -..++.+.+.+..++.|+. ++++++|.+++..+ +...+++.++++ ..++.+|.||+|
T Consensus 218 ----------------~--~~~~~~~~l~~~l~~~Gv~--v~~~~~v~~i~~~~-~~~~v~~~~~~g-~~~~~~D~vi~a 275 (476)
T 3lad_A 218 ----------------A--VDEQVAKEAQKILTKQGLK--ILLGARVTGTEVKN-KQVTVKFVDAEG-EKSQAFDKLIVA 275 (476)
T ss_dssp ----------------T--SCHHHHHHHHHHHHHTTEE--EEETCEEEEEEECS-SCEEEEEESSSE-EEEEEESEEEEC
T ss_pred ----------------c--cCHHHHHHHHHHHHhCCCE--EEECCEEEEEEEcC-CEEEEEEEeCCC-cEEEECCEEEEe
Confidence 0 0156778888888888988 99999999998766 567777776543 357899999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| ..|+..
T Consensus 276 ~G--~~p~~~ 283 (476)
T 3lad_A 276 VG--RRPVTT 283 (476)
T ss_dssp SC--EEECCT
T ss_pred eC--CcccCC
Confidence 99 666654
No 187
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=98.63 E-value=4.3e-08 Score=97.58 Aligned_cols=61 Identities=21% Similarity=0.218 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEE---------------cCCCceEEEEEeCCCceEEE--EEcEEEEcc
Q 013303 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL---------------VESNKWKVKSRKKDDVVEEE--TFDAVVVCN 162 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~---------------~~~~~~~v~~~~~~~~~~~~--~~d~VVvAt 162 (446)
....++...|.+.+++.|+. ++++++|+++.. .++..|.|.+.++ ++ .+|.||+|+
T Consensus 178 ~~~~~l~~~L~~~~~~~Gv~--i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-----~i~~~Ad~VV~At 250 (448)
T 3axb_A 178 LDAEKVVDYYYRRASGAGVE--FIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-----TRVEVGEKLVVAA 250 (448)
T ss_dssp CCHHHHHHHHHHHHHHTTCE--EEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-----CEEEEEEEEEECC
T ss_pred EcHHHHHHHHHHHHHhCCCE--EEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-----EEeecCCEEEECC
Confidence 35678888999999999988 999999999987 3312245554332 47 999999999
Q ss_pred CCCCC
Q 013303 163 GHFSV 167 (446)
Q Consensus 163 G~~s~ 167 (446)
|.++.
T Consensus 251 G~~s~ 255 (448)
T 3axb_A 251 GVWSN 255 (448)
T ss_dssp GGGHH
T ss_pred CcCHH
Confidence 97654
No 188
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=98.62 E-value=1.5e-07 Score=94.80 Aligned_cols=102 Identities=20% Similarity=0.274 Sum_probs=81.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHC---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~---g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~ 78 (446)
.++|+|||||+.|+.+|..|++. |.+|+++++.+.+..
T Consensus 187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~--------------------------------------- 227 (490)
T 1fec_A 187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR--------------------------------------- 227 (490)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST---------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCccc---------------------------------------
Confidence 46899999999999999999999 999999999764310
Q ss_pred ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (446)
Q Consensus 79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V 158 (446)
.+ ..++.+.+.+.+++.|+. ++++++|.+++..+++...|++.++. ++.+|.|
T Consensus 228 -------------------~~--d~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~~~~v~~~~G~----~i~~D~v 280 (490)
T 1fec_A 228 -------------------GF--DSELRKQLTEQLRANGIN--VRTHENPAKVTKNADGTRHVVFESGA----EADYDVV 280 (490)
T ss_dssp -------------------TS--CHHHHHHHHHHHHHTTEE--EEETCCEEEEEECTTSCEEEEETTSC----EEEESEE
T ss_pred -------------------cc--CHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCEEEEEECCCc----EEEcCEE
Confidence 00 146778888888899988 99999999998765334667665442 7899999
Q ss_pred EEccCCCCCCccC
Q 013303 159 VVCNGHFSVPRLA 171 (446)
Q Consensus 159 VvAtG~~s~p~~p 171 (446)
|+|+| ..|+..
T Consensus 281 v~a~G--~~p~~~ 291 (490)
T 1fec_A 281 MLAIG--RVPRSQ 291 (490)
T ss_dssp EECSC--EEESCT
T ss_pred EEccC--CCcCcc
Confidence 99999 666654
No 189
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=98.61 E-value=9.4e-08 Score=93.98 Aligned_cols=101 Identities=21% Similarity=0.276 Sum_probs=80.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+....
T Consensus 143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~---------------------------------------- 182 (410)
T 3ef6_A 143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRV---------------------------------------- 182 (410)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHH----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhh----------------------------------------
Confidence 4789999999999999999999999999999875431100
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
-..++.+++.+..++.|++ ++++++|.+++..+ ....|++.++. ++.+|.||+|
T Consensus 183 -------------------~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~-~~~~v~~~dg~----~i~aD~Vv~a 236 (410)
T 3ef6_A 183 -------------------LGRRIGAWLRGLLTELGVQ--VELGTGVVGFSGEG-QLEQVMASDGR----SFVADSALIC 236 (410)
T ss_dssp -------------------HCHHHHHHHHHHHHHHTCE--EECSCCEEEEECSS-SCCEEEETTSC----EEECSEEEEC
T ss_pred -------------------cCHHHHHHHHHHHHHCCCE--EEeCCEEEEEeccC-cEEEEEECCCC----EEEcCEEEEe
Confidence 0156778888888999998 99999999998654 44567766553 7899999999
Q ss_pred cCCCCCCcc
Q 013303 162 NGHFSVPRL 170 (446)
Q Consensus 162 tG~~s~p~~ 170 (446)
+| ..|+.
T Consensus 237 ~G--~~p~~ 243 (410)
T 3ef6_A 237 VG--AEPAD 243 (410)
T ss_dssp SC--EEECC
T ss_pred eC--CeecH
Confidence 99 56654
No 190
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=98.61 E-value=1.9e-07 Score=91.95 Aligned_cols=101 Identities=27% Similarity=0.265 Sum_probs=80.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~------------------------------------------ 189 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLA------------------------------------------ 189 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT------------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhh------------------------------------------
Confidence 57899999999999999999999999999998753300
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~~~~~~~d~VVv 160 (446)
.. ...++.+++.+..++.|++ ++++++|.++...+ +. ..|.+.++. ++.+|.||+
T Consensus 190 ---------------~~--~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~-~~v~~v~l~dG~----~i~aD~Vv~ 245 (415)
T 3lxd_A 190 ---------------RV--AGEALSEFYQAEHRAHGVD--LRTGAAMDCIEGDG-TKVTGVRMQDGS----VIPADIVIV 245 (415)
T ss_dssp ---------------TT--SCHHHHHHHHHHHHHTTCE--EEETCCEEEEEESS-SBEEEEEESSSC----EEECSEEEE
T ss_pred ---------------hh--cCHHHHHHHHHHHHhCCCE--EEECCEEEEEEecC-CcEEEEEeCCCC----EEEcCEEEE
Confidence 00 0157888899999999998 99999999998754 33 356665553 789999999
Q ss_pred ccCCCCCCcc
Q 013303 161 CNGHFSVPRL 170 (446)
Q Consensus 161 AtG~~s~p~~ 170 (446)
|+| ..|+.
T Consensus 246 a~G--~~p~~ 253 (415)
T 3lxd_A 246 GIG--IVPCV 253 (415)
T ss_dssp CSC--CEESC
T ss_pred CCC--CccCh
Confidence 999 66664
No 191
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=98.60 E-value=9.9e-08 Score=95.90 Aligned_cols=105 Identities=19% Similarity=0.212 Sum_probs=80.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+.+..
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~------------------------------------------ 222 (482)
T 1ojt_A 185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ------------------------------------------ 222 (482)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST------------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc------------------------------------------
Confidence 47899999999999999999999999999998764310
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
. -..++.+.+.+..++.|+. ++++++|.+++..+ +...|++.+..+...++.+|.||+|
T Consensus 223 ----------------~--~~~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~~~~~g~~~~~D~vv~a 281 (482)
T 1ojt_A 223 ----------------G--ADRDLVKVWQKQNEYRFDN--IMVNTKTVAVEPKE-DGVYVTFEGANAPKEPQRYDAVLVA 281 (482)
T ss_dssp ----------------T--SCHHHHHHHHHHHGGGEEE--EECSCEEEEEEEET-TEEEEEEESSSCCSSCEEESCEEEC
T ss_pred ----------------c--cCHHHHHHHHHHHHhcCCE--EEECCEEEEEEEcC-CeEEEEEeccCCCceEEEcCEEEEC
Confidence 0 0156778888888888888 99999999998765 4566776641110125789999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| ..|+..
T Consensus 282 ~G--~~p~~~ 289 (482)
T 1ojt_A 282 AG--RAPNGK 289 (482)
T ss_dssp CC--EEECGG
T ss_pred cC--CCcCCC
Confidence 99 667653
No 192
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=98.60 E-value=1.9e-07 Score=94.14 Aligned_cols=102 Identities=15% Similarity=0.160 Sum_probs=80.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHC---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~---g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~ 78 (446)
.++|+|||||+.|+.+|..|++. |.+|+++++.+.+..
T Consensus 191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~--------------------------------------- 231 (495)
T 2wpf_A 191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILR--------------------------------------- 231 (495)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCT---------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccc---------------------------------------
Confidence 36899999999999999999999 999999998764310
Q ss_pred ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (446)
Q Consensus 79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V 158 (446)
. -..++.+.+.+.+++.|+. ++++++|.+++..+++...|++.++. ++.+|.|
T Consensus 232 -------------------~--~d~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~~~~v~~~~G~----~i~~D~v 284 (495)
T 2wpf_A 232 -------------------G--FDETIREEVTKQLTANGIE--IMTNENPAKVSLNTDGSKHVTFESGK----TLDVDVV 284 (495)
T ss_dssp -------------------T--SCHHHHHHHHHHHHHTTCE--EEESCCEEEEEECTTSCEEEEETTSC----EEEESEE
T ss_pred -------------------c--cCHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCceEEEEECCCc----EEEcCEE
Confidence 0 0146778888888899998 99999999998764334667665443 7899999
Q ss_pred EEccCCCCCCccC
Q 013303 159 VVCNGHFSVPRLA 171 (446)
Q Consensus 159 VvAtG~~s~p~~p 171 (446)
|+|+| ..|+..
T Consensus 285 v~a~G--~~p~~~ 295 (495)
T 2wpf_A 285 MMAIG--RIPRTN 295 (495)
T ss_dssp EECSC--EEECCG
T ss_pred EECCC--Cccccc
Confidence 99999 666653
No 193
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=98.59 E-value=2.3e-08 Score=100.98 Aligned_cols=41 Identities=32% Similarity=0.527 Sum_probs=32.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~ 42 (446)
||+|+|||||++||+||..|++.|++|+|+|+++.+||...
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~ 41 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAY 41 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------C
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEE
Confidence 68999999999999999999999999999999999998543
No 194
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=98.59 E-value=3.2e-07 Score=91.37 Aligned_cols=103 Identities=24% Similarity=0.270 Sum_probs=80.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 185 (452)
T 3oc4_A 147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPK----------------------------------------- 185 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccc-----------------------------------------
Confidence 478999999999999999999999999999987533100
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.+ ..++.+.+.+.+++.|+. ++++++|.+++..+ +...|.+.+ + ++.+|.||+|
T Consensus 186 ----------------~~--d~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~-~~v~v~~~~--g---~i~aD~Vv~A 239 (452)
T 3oc4_A 186 ----------------YF--DKEMVAEVQKSLEKQAVI--FHFEETVLGIEETA-NGIVLETSE--Q---EISCDSGIFA 239 (452)
T ss_dssp ----------------TC--CHHHHHHHHHHHHTTTEE--EEETCCEEEEEECS-SCEEEEESS--C---EEEESEEEEC
T ss_pred ----------------cC--CHHHHHHHHHHHHHcCCE--EEeCCEEEEEEccC-CeEEEEECC--C---EEEeCEEEEC
Confidence 00 157788888888888988 99999999998655 555555532 2 6899999999
Q ss_pred cCCCCCCccCCC
Q 013303 162 NGHFSVPRLAQV 173 (446)
Q Consensus 162 tG~~s~p~~p~i 173 (446)
+| ..|+...+
T Consensus 240 ~G--~~p~~~~l 249 (452)
T 3oc4_A 240 LN--LHPQLAYL 249 (452)
T ss_dssp SC--CBCCCSSC
T ss_pred cC--CCCChHHH
Confidence 99 67766543
No 195
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=98.59 E-value=9e-07 Score=91.94 Aligned_cols=68 Identities=10% Similarity=0.016 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHh-CC-CCcEEeCeEEEEEEEcCC--Cce-EEEEEe-CCCceEEEEEcEEEEccCCCCCCccCC
Q 013303 103 EEVLRYLQNFAREF-GV-DQVVRLHTEVLNARLVES--NKW-KVKSRK-KDDVVEEETFDAVVVCNGHFSVPRLAQ 172 (446)
Q Consensus 103 ~~v~~yl~~~~~~~-~l-~~~i~~~~~V~~v~~~~~--~~~-~v~~~~-~~~~~~~~~~d~VVvAtG~~s~p~~p~ 172 (446)
..+...|.+.+++. |+ . +.+++.|+++...++ +.. -|...+ .++....+.++.||+|||.++.-..|.
T Consensus 151 ~~~~~~l~~~~~~~~gv~~--i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~~y~~~ 224 (643)
T 1jnr_A 151 ESYKPIIAEAAKMAVGEEN--IYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLLFRPR 224 (643)
T ss_dssp TTHHHHHHHHHHHHHCGGG--EECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSSSCCS
T ss_pred HHHHHHHHHHHHhcCCCcE--EEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcccccccCc
Confidence 34667777778777 88 7 999999999987652 132 233333 234445789999999999877644443
No 196
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=98.58 E-value=1.6e-07 Score=92.05 Aligned_cols=102 Identities=24% Similarity=0.244 Sum_probs=79.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~----------------------------------------- 180 (404)
T 3fg2_P 142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMAR----------------------------------------- 180 (404)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT-----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhh-----------------------------------------
Confidence 468999999999999999999999999999987533000
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
. ...++.+++.+..++.|++ ++++++|.++...++....|.+.++. ++.+|.||+|
T Consensus 181 ----------------~--~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~v~~V~~~dG~----~i~aD~Vv~a 236 (404)
T 3fg2_P 181 ----------------V--VTPEISSYFHDRHSGAGIR--MHYGVRATEIAAEGDRVTGVVLSDGN----TLPCDLVVVG 236 (404)
T ss_dssp ----------------T--SCHHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTEEEEEEETTSC----EEECSEEEEC
T ss_pred ----------------c--cCHHHHHHHHHHHHhCCcE--EEECCEEEEEEecCCcEEEEEeCCCC----EEEcCEEEEC
Confidence 0 0157788899999999998 99999999998764122345555543 7899999999
Q ss_pred cCCCCCCcc
Q 013303 162 NGHFSVPRL 170 (446)
Q Consensus 162 tG~~s~p~~ 170 (446)
+| ..|+.
T Consensus 237 ~G--~~p~~ 243 (404)
T 3fg2_P 237 VG--VIPNV 243 (404)
T ss_dssp CC--EEECC
T ss_pred cC--CccCH
Confidence 99 56654
No 197
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=98.58 E-value=1.8e-07 Score=91.82 Aligned_cols=97 Identities=19% Similarity=0.260 Sum_probs=77.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 183 (408)
T 2gqw_A 145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR----------------------------------------- 183 (408)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc-----------------------------------------
Confidence 478999999999999999999999999999997633100
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
. ...++.+++.+..++.|++ ++++++|.+++ + + .|++.++. ++.+|.||+|
T Consensus 184 ----------------~--~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~--~-~--~v~~~~g~----~i~~D~vi~a 234 (408)
T 2gqw_A 184 ----------------A--APATLADFVARYHAAQGVD--LRFERSVTGSV--D-G--VVLLDDGT----RIAADMVVVG 234 (408)
T ss_dssp ----------------T--SCHHHHHHHHHHHHHTTCE--EEESCCEEEEE--T-T--EEEETTSC----EEECSEEEEC
T ss_pred ----------------c--cCHHHHHHHHHHHHHcCcE--EEeCCEEEEEE--C-C--EEEECCCC----EEEcCEEEEC
Confidence 0 0156778888888999998 99999999998 3 4 56654442 7899999999
Q ss_pred cCCCCCCcc
Q 013303 162 NGHFSVPRL 170 (446)
Q Consensus 162 tG~~s~p~~ 170 (446)
+| ..|+.
T Consensus 235 ~G--~~p~~ 241 (408)
T 2gqw_A 235 IG--VLAND 241 (408)
T ss_dssp SC--EEECC
T ss_pred cC--CCccH
Confidence 99 56654
No 198
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=98.58 E-value=1.9e-07 Score=93.66 Aligned_cols=102 Identities=18% Similarity=0.266 Sum_probs=79.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------ 222 (479)
T 2hqm_A 185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR------------------------------------------ 222 (479)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT------------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc------------------------------------------
Confidence 47899999999999999999999999999998764310
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCC-ceEEEEEeCCCceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~-~~~v~~~~~~~~~~~~~~d~VVv 160 (446)
.+ ..++.+.+.+..++.|++ ++++++|.+++..+++ ...|++.++ + .++.+|.||+
T Consensus 223 ----------------~~--d~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~~v~~~~G--~-~~i~~D~vv~ 279 (479)
T 2hqm_A 223 ----------------KF--DECIQNTITDHYVKEGIN--VHKLSKIVKVEKNVETDKLKIHMNDS--K-SIDDVDELIW 279 (479)
T ss_dssp ----------------TS--CHHHHHHHHHHHHHHTCE--EECSCCEEEEEECC-CCCEEEEETTS--C-EEEEESEEEE
T ss_pred ----------------cc--CHHHHHHHHHHHHhCCeE--EEeCCEEEEEEEcCCCcEEEEEECCC--c-EEEEcCEEEE
Confidence 00 146778888888888998 9999999999875422 255655443 1 3789999999
Q ss_pred ccCCCCCCcc
Q 013303 161 CNGHFSVPRL 170 (446)
Q Consensus 161 AtG~~s~p~~ 170 (446)
|+| ..|+.
T Consensus 280 a~G--~~p~~ 287 (479)
T 2hqm_A 280 TIG--RKSHL 287 (479)
T ss_dssp CSC--EEECC
T ss_pred CCC--CCCcc
Confidence 999 66665
No 199
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=98.56 E-value=2.4e-07 Score=91.63 Aligned_cols=101 Identities=24% Similarity=0.308 Sum_probs=78.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~----------------------------------------- 187 (431)
T 1q1r_A 149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER----------------------------------------- 187 (431)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT-----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc-----------------------------------------
Confidence 468999999999999999999999999999986532000
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEE--cCCCce-EEEEEeCCCceEEEEEcEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL--VESNKW-KVKSRKKDDVVEEETFDAV 158 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~--~~~~~~-~v~~~~~~~~~~~~~~d~V 158 (446)
. ...++.+++.+.+++.|+. ++++++|.+++. .+ +.. .|.+.++. ++.+|.|
T Consensus 188 ----------------~--~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~-~~v~~v~~~~G~----~i~~D~V 242 (431)
T 1q1r_A 188 ----------------V--TAPPVSAFYEHLHREAGVD--IRTGTQVCGFEMSTDQ-QKVTAVLCEDGT----RLPADLV 242 (431)
T ss_dssp ----------------T--SCHHHHHHHHHHHHHHTCE--EECSCCEEEEEECTTT-CCEEEEEETTSC----EEECSEE
T ss_pred ----------------h--hhHHHHHHHHHHHHhCCeE--EEeCCEEEEEEeccCC-CcEEEEEeCCCC----EEEcCEE
Confidence 0 0146778888888889998 999999999986 33 333 56655442 7899999
Q ss_pred EEccCCCCCCcc
Q 013303 159 VVCNGHFSVPRL 170 (446)
Q Consensus 159 VvAtG~~s~p~~ 170 (446)
|+|+| ..|+.
T Consensus 243 v~a~G--~~p~~ 252 (431)
T 1q1r_A 243 IAGIG--LIPNC 252 (431)
T ss_dssp EECCC--EEECC
T ss_pred EECCC--CCcCc
Confidence 99999 55654
No 200
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=98.56 E-value=3e-07 Score=92.78 Aligned_cols=101 Identities=18% Similarity=0.143 Sum_probs=79.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|.+.|.+|+++++.+.+...
T Consensus 182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 220 (499)
T 1xdi_A 182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY----------------------------------------- 220 (499)
T ss_dssp CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-----------------------------------------
Confidence 468999999999999999999999999999987643100
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
-..++.+.+.+.+++.|+. ++++++|.+++..+ +...|...++ .++.+|.||+|
T Consensus 221 -------------------~d~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~~-~~v~v~~~~g----~~i~aD~Vv~a 274 (499)
T 1xdi_A 221 -------------------EDADAALVLEESFAERGVR--LFKNARAASVTRTG-AGVLVTMTDG----RTVEGSHALMT 274 (499)
T ss_dssp -------------------SSHHHHHHHHHHHHHTTCE--EETTCCEEEEEECS-SSEEEEETTS----CEEEESEEEEC
T ss_pred -------------------cCHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeC-CEEEEEECCC----cEEEcCEEEEC
Confidence 0146788888889999998 99999999998765 4555554333 26899999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| ..|+..
T Consensus 275 ~G--~~p~~~ 282 (499)
T 1xdi_A 275 IG--SVPNTS 282 (499)
T ss_dssp CC--EEECCS
T ss_pred CC--CCcCCC
Confidence 99 666654
No 201
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=98.55 E-value=1.4e-07 Score=94.81 Aligned_cols=100 Identities=21% Similarity=0.315 Sum_probs=77.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||++|+.+|..|++.|.+|+++++.+.+...
T Consensus 186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 224 (480)
T 3cgb_A 186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTI----------------------------------------- 224 (480)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSS-----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhc-----------------------------------------
Confidence 478999999999999999999999999999986533110
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
-..++.+++.+.+++.|++ ++++++|.+++..+ ..+.+.+. . .++.+|.||+|
T Consensus 225 -------------------~~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~-~v~~v~~~--~---~~i~~D~vi~a 277 (480)
T 3cgb_A 225 -------------------YDGDMAEYIYKEADKHHIE--ILTNENVKAFKGNE-RVEAVETD--K---GTYKADLVLVS 277 (480)
T ss_dssp -------------------SCHHHHHHHHHHHHHTTCE--EECSCCEEEEEESS-BEEEEEET--T---EEEECSEEEEC
T ss_pred -------------------CCHHHHHHHHHHHHHcCcE--EEcCCEEEEEEcCC-cEEEEEEC--C---CEEEcCEEEEC
Confidence 0156778888888999998 99999999998642 22334432 1 26899999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| ..|+.+
T Consensus 278 ~G--~~p~~~ 285 (480)
T 3cgb_A 278 VG--VKPNTD 285 (480)
T ss_dssp SC--EEESCG
T ss_pred cC--CCcChH
Confidence 99 556543
No 202
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=98.55 E-value=2.9e-07 Score=92.07 Aligned_cols=99 Identities=19% Similarity=0.268 Sum_probs=79.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.
T Consensus 176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l------------------------------------------- 212 (467)
T 1zk7_A 176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFF------------------------------------------- 212 (467)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT-------------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccC-------------------------------------------
Confidence 4789999999999999999999999999999875330
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
| ...++.+.+.+.+++.|++ ++++++|.+++..+ +.+.|.+. . .++.+|.||+|
T Consensus 213 --~----------------~~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~-~~~~v~~~--~---~~i~aD~Vv~a 266 (467)
T 1zk7_A 213 --R----------------EDPAIGEAVTAAFRAEGIE--VLEHTQASQVAHMD-GEFVLTTT--H---GELRADKLLVA 266 (467)
T ss_dssp --T----------------SCHHHHHHHHHHHHHTTCE--EETTCCEEEEEEET-TEEEEEET--T---EEEEESEEEEC
T ss_pred --C----------------CCHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeC-CEEEEEEC--C---cEEEcCEEEEC
Confidence 1 0146788888888899998 99999999998764 55666553 1 36899999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| ..|+..
T Consensus 267 ~G--~~p~~~ 274 (467)
T 1zk7_A 267 TG--RTPNTR 274 (467)
T ss_dssp SC--EEESCT
T ss_pred CC--CCcCCC
Confidence 99 566643
No 203
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=98.55 E-value=9.2e-07 Score=88.81 Aligned_cols=105 Identities=20% Similarity=0.216 Sum_probs=83.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.. + .
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~----l--------------------------------------- 222 (483)
T 3dgh_A 187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI-V----L--------------------------------------- 222 (483)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC-S----S---------------------------------------
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC-C----C---------------------------------------
Confidence 4689999999999999999999999999998742 1 0
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VVv 160 (446)
+ .+ ..++.+.+.+..++.|+. ++++++|.+++..+++...|++.++. ++..++.+|.||+
T Consensus 223 --~-------------~~--d~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~ 283 (483)
T 3dgh_A 223 --R-------------GF--DQQMAELVAASMEERGIP--FLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLW 283 (483)
T ss_dssp --T-------------TS--CHHHHHHHHHHHHHTTCC--EEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEE
T ss_pred --c-------------cc--CHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEE
Confidence 0 00 157788888889999998 99999999998765455778877764 4456799999999
Q ss_pred ccCCCCCCccC
Q 013303 161 CNGHFSVPRLA 171 (446)
Q Consensus 161 AtG~~s~p~~p 171 (446)
|+| ..|+..
T Consensus 284 a~G--~~p~~~ 292 (483)
T 3dgh_A 284 AIG--RKGLVD 292 (483)
T ss_dssp CSC--EEECCG
T ss_pred Ccc--cccCcC
Confidence 999 566654
No 204
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=98.54 E-value=3.7e-07 Score=91.45 Aligned_cols=101 Identities=19% Similarity=0.181 Sum_probs=80.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHC-CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~ 80 (446)
.++|+|||+|+.|+.+|..|++. |.+|+++++.+.+..
T Consensus 159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~----------------------------------------- 197 (472)
T 3iwa_A 159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMP----------------------------------------- 197 (472)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSST-----------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccc-----------------------------------------
Confidence 46899999999999999999999 999999998653200
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv 160 (446)
.. ...++.+.+.+.+++.|++ ++++++|.+++..+ +..+|.+.++. ++.+|.||+
T Consensus 198 ----------------~~--~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~i~aD~Vv~ 252 (472)
T 3iwa_A 198 ----------------GF--TSKSLSQMLRHDLEKNDVV--VHTGEKVVRLEGEN-GKVARVITDKR----TLDADLVIL 252 (472)
T ss_dssp ----------------TT--SCHHHHHHHHHHHHHTTCE--EECSCCEEEEEESS-SBEEEEEESSC----EEECSEEEE
T ss_pred ----------------cc--cCHHHHHHHHHHHHhcCCE--EEeCCEEEEEEccC-CeEEEEEeCCC----EEEcCEEEE
Confidence 00 0157788888889999998 99999999998755 66667776654 789999999
Q ss_pred ccCCCCCCcc
Q 013303 161 CNGHFSVPRL 170 (446)
Q Consensus 161 AtG~~s~p~~ 170 (446)
|+| ..|+.
T Consensus 253 a~G--~~p~~ 260 (472)
T 3iwa_A 253 AAG--VSPNT 260 (472)
T ss_dssp CSC--EEECC
T ss_pred CCC--CCcCH
Confidence 999 55554
No 205
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=98.53 E-value=3.5e-07 Score=91.12 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=77.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 187 (452)
T 2cdu_A 149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYK----------------------------------------- 187 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTT-----------------------------------------
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhh-----------------------------------------
Confidence 478999999999999999999999999999987533000
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEeCCCceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~~~~~~~~~~~d~VVv 160 (446)
. -..++.+.+.+..++.|+. ++++++|.+++..+ +... +.. ++ .++.+|.||+
T Consensus 188 ----------------~--~~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~-~~v~~v~~-~g----~~i~~D~vv~ 241 (452)
T 2cdu_A 188 ----------------Y--FDKEFTDILAKDYEAHGVN--LVLGSKVAAFEEVD-DEIITKTL-DG----KEIKSDIAIL 241 (452)
T ss_dssp ----------------T--SCHHHHHHHHHHHHHTTCE--EEESSCEEEEEEET-TEEEEEET-TS----CEEEESEEEE
T ss_pred ----------------h--hhhhHHHHHHHHHHHCCCE--EEcCCeeEEEEcCC-CeEEEEEe-CC----CEEECCEEEE
Confidence 0 0156788888889999998 99999999998643 4333 332 22 3789999999
Q ss_pred ccCCCCCCccC
Q 013303 161 CNGHFSVPRLA 171 (446)
Q Consensus 161 AtG~~s~p~~p 171 (446)
|+| ..|+.+
T Consensus 242 a~G--~~p~~~ 250 (452)
T 2cdu_A 242 CIG--FRPNTE 250 (452)
T ss_dssp CCC--EEECCG
T ss_pred CcC--CCCCHH
Confidence 999 666654
No 206
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=98.52 E-value=4.1e-07 Score=91.42 Aligned_cols=102 Identities=16% Similarity=0.284 Sum_probs=81.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------ 228 (484)
T 3o0h_A 191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILR------------------------------------------ 228 (484)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------------
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcccc------------------------------------------
Confidence 47899999999999999999999999999998753310
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.+ ..++.+.+.+.+++.|+. ++++++|.+++..+ +.+.|++.++. ++.+|.||+|
T Consensus 229 ----------------~~--~~~~~~~l~~~l~~~Gv~--i~~~~~V~~i~~~~-~~v~v~~~~g~----~i~aD~Vi~A 283 (484)
T 3o0h_A 229 ----------------NF--DYDLRQLLNDAMVAKGIS--IIYEATVSQVQSTE-NCYNVVLTNGQ----TICADRVMLA 283 (484)
T ss_dssp ----------------TS--CHHHHHHHHHHHHHHTCE--EESSCCEEEEEECS-SSEEEEETTSC----EEEESEEEEC
T ss_pred ----------------cc--CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEeeC-CEEEEEECCCc----EEEcCEEEEe
Confidence 00 146778888888888998 99999999998866 56777765543 7899999999
Q ss_pred cCCCCCCccCC
Q 013303 162 NGHFSVPRLAQ 172 (446)
Q Consensus 162 tG~~s~p~~p~ 172 (446)
+| ..|+...
T Consensus 284 ~G--~~p~~~~ 292 (484)
T 3o0h_A 284 TG--RVPNTTG 292 (484)
T ss_dssp CC--EEECCTT
T ss_pred eC--CCcCCCC
Confidence 99 5666543
No 207
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=98.52 E-value=7.4e-07 Score=89.38 Aligned_cols=106 Identities=15% Similarity=0.102 Sum_probs=81.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------ 224 (478)
T 3dk9_A 187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR------------------------------------------ 224 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT------------------------------------------
T ss_pred CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc------------------------------------------
Confidence 47899999999999999999999999999998754310
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCC-ceEEEEEeCC-Cce--EEEEEcE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKKD-DVV--EEETFDA 157 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~-~~~v~~~~~~-~~~--~~~~~d~ 157 (446)
. ...++.+++.+..++.|+. ++++++|.+++..+++ ...|.+.+.. ++. .++.+|.
T Consensus 225 ----------------~--~d~~~~~~~~~~l~~~gv~--i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~ 284 (478)
T 3dk9_A 225 ----------------S--FDSMISTNCTEELENAGVE--VLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDC 284 (478)
T ss_dssp ----------------T--SCHHHHHHHHHHHHHTTCE--EETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESE
T ss_pred ----------------c--cCHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCE
Confidence 0 0156788888888889998 9999999999876533 2455554422 222 5789999
Q ss_pred EEEccCCCCCCccC
Q 013303 158 VVVCNGHFSVPRLA 171 (446)
Q Consensus 158 VVvAtG~~s~p~~p 171 (446)
||+|+| ..|+..
T Consensus 285 vi~a~G--~~p~~~ 296 (478)
T 3dk9_A 285 LLWAIG--RVPNTK 296 (478)
T ss_dssp EEECSC--EEESCT
T ss_pred EEEeec--cccCCC
Confidence 999999 666654
No 208
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=98.51 E-value=3.7e-07 Score=91.87 Aligned_cols=100 Identities=22% Similarity=0.336 Sum_probs=77.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 232 (490)
T 2bc0_A 194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG----------------------------------------- 232 (490)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-----------------------------------------
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhh-----------------------------------------
Confidence 478999999999999999999999999999997533100
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCce-EEEEEeCCCceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~-~v~~~~~~~~~~~~~~d~VVv 160 (446)
. -..++.+.+.+..++.|++ ++++++|++++. + +.. .|.+ ++ .++.+|.||+
T Consensus 233 ----------------~--~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~-~-~~v~~v~~-~g----~~i~~D~Vi~ 285 (490)
T 2bc0_A 233 ----------------Y--YDRDLTDLMAKNMEEHGIQ--LAFGETVKEVAG-N-GKVEKIIT-DK----NEYDVDMVIL 285 (490)
T ss_dssp ----------------T--SCHHHHHHHHHHHHTTTCE--EEETCCEEEEEC-S-SSCCEEEE-SS----CEEECSEEEE
T ss_pred ----------------H--HHHHHHHHHHHHHHhCCeE--EEeCCEEEEEEc-C-CcEEEEEE-CC----cEEECCEEEE
Confidence 0 0157788888888888998 999999999985 2 332 3444 33 2789999999
Q ss_pred ccCCCCCCccC
Q 013303 161 CNGHFSVPRLA 171 (446)
Q Consensus 161 AtG~~s~p~~p 171 (446)
|+| ..|+.+
T Consensus 286 a~G--~~p~~~ 294 (490)
T 2bc0_A 286 AVG--FRPNTT 294 (490)
T ss_dssp CCC--EEECCG
T ss_pred CCC--CCcChH
Confidence 999 666654
No 209
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=98.51 E-value=4.2e-08 Score=99.27 Aligned_cols=41 Identities=32% Similarity=0.444 Sum_probs=37.6
Q ss_pred CCeEEEECcChHHHHHHHHHHH-CCCcEEEEeeCCCcCceee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLR-EGHTVVVYEKGEQVGGSWI 42 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~-~g~~v~v~e~~~~~GG~w~ 42 (446)
..||+|||||++||+||..|++ .|++|+|+|+++++||.+.
T Consensus 10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~ 51 (513)
T 4gde_A 10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLAS 51 (513)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGC
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCee
Confidence 3689999999999999999997 4999999999999999764
No 210
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=98.49 E-value=5.5e-07 Score=92.33 Aligned_cols=101 Identities=22% Similarity=0.291 Sum_probs=78.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.
T Consensus 151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l------------------------------------------- 187 (565)
T 3ntd_A 151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVM------------------------------------------- 187 (565)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSC-------------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccc-------------------------------------------
Confidence 3689999999999999999999999999999965320
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEc------------------CCCceEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV------------------ESNKWKVKS 143 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~------------------~~~~~~v~~ 143 (446)
| . ...++.+++.+.+++.|++ ++++++|.+++.. .++..++..
T Consensus 188 --~-------------~--~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 248 (565)
T 3ntd_A 188 --T-------------P--VDREMAGFAHQAIRDQGVD--LRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTL 248 (565)
T ss_dssp --T-------------T--SCHHHHHHHHHHHHHTTCE--EEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEE
T ss_pred --h-------------h--cCHHHHHHHHHHHHHCCCE--EEeCCeEEEEeccccccccccccccccccccCCCcEEEEE
Confidence 0 0 0156778888888899998 9999999999873 224455555
Q ss_pred EeCCCceEEEEEcEEEEccCCCCCCcc
Q 013303 144 RKKDDVVEEETFDAVVVCNGHFSVPRL 170 (446)
Q Consensus 144 ~~~~~~~~~~~~d~VVvAtG~~s~p~~ 170 (446)
.++. ++.+|.||+|+| ..|+.
T Consensus 249 ~~g~----~i~~D~vi~a~G--~~p~~ 269 (565)
T 3ntd_A 249 SNGE----LLETDLLIMAIG--VRPET 269 (565)
T ss_dssp TTSC----EEEESEEEECSC--EEECC
T ss_pred cCCC----EEEcCEEEECcC--Cccch
Confidence 3332 789999999999 56654
No 211
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=98.49 E-value=4.9e-07 Score=91.75 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=79.5
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
++|+|||||..|+.+|..|++.|.+|+++++.+.+..
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~------------------------------------------- 251 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL------------------------------------------- 251 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-------------------------------------------
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccc-------------------------------------------
Confidence 7899999999999999999999999999999763310
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc---eEEEEEeCCCceEEEEEcEEE
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK---WKVKSRKKDDVVEEETFDAVV 159 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~---~~v~~~~~~~~~~~~~~d~VV 159 (446)
. ...++.+++.+.+++.|+. ++++++|+++...+++. +.|++.++ + .++.+|.||
T Consensus 252 ---------------~--~~~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~~~~~v~~~~v~~~~G--~-~~i~aD~Vv 309 (523)
T 1mo9_A 252 ---------------I--KDNETRAYVLDRMKEQGME--IISGSNVTRIEEDANGRVQAVVAMTPNG--E-MRIETDFVF 309 (523)
T ss_dssp ---------------C--CSHHHHHHHHHHHHHTTCE--EESSCEEEEEEECTTSBEEEEEEEETTE--E-EEEECSCEE
T ss_pred ---------------c--ccHHHHHHHHHHHHhCCcE--EEECCEEEEEEEcCCCceEEEEEEECCC--c-EEEEcCEEE
Confidence 0 0157788888989999998 99999999998755232 55555322 1 368999999
Q ss_pred EccCCCCCCccC
Q 013303 160 VCNGHFSVPRLA 171 (446)
Q Consensus 160 vAtG~~s~p~~p 171 (446)
+|+| ..|+..
T Consensus 310 ~A~G--~~p~~~ 319 (523)
T 1mo9_A 310 LGLG--EQPRSA 319 (523)
T ss_dssp ECCC--CEECCH
T ss_pred ECcC--CccCCc
Confidence 9999 566653
No 212
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=98.47 E-value=1.7e-06 Score=87.02 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=82.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++...+ .
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l----~--------------------------------------- 221 (488)
T 3dgz_A 185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPL----R--------------------------------------- 221 (488)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSS----T---------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCccc----c---------------------------------------
Confidence 368999999999999999999999999999974210 0
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VVv 160 (446)
.+ ..++.+.+.+..++.|+. ++++++|.++...+++...|++.+.. ++..++.+|.||+
T Consensus 222 ----------------~~--d~~~~~~l~~~l~~~gv~--~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~ 281 (488)
T 3dgz_A 222 ----------------GF--DQQMSSLVTEHMESHGTQ--FLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLW 281 (488)
T ss_dssp ----------------TS--CHHHHHHHHHHHHHTTCE--EEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEE
T ss_pred ----------------cC--CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEE
Confidence 00 157788888888999998 99999999998755456778777643 3445689999999
Q ss_pred ccCCCCCCccC
Q 013303 161 CNGHFSVPRLA 171 (446)
Q Consensus 161 AtG~~s~p~~p 171 (446)
|+| ..|+..
T Consensus 282 a~G--~~p~~~ 290 (488)
T 3dgz_A 282 AIG--RVPETR 290 (488)
T ss_dssp CSC--EEESCG
T ss_pred ccc--CCcccC
Confidence 999 666654
No 213
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=98.46 E-value=6.7e-07 Score=90.61 Aligned_cols=100 Identities=18% Similarity=0.108 Sum_probs=80.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
+++++|||||+.|+..|..+++.|.+|+|+++...+
T Consensus 223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L-------------------------------------------- 258 (542)
T 4b1b_A 223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVL-------------------------------------------- 258 (542)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSS--------------------------------------------
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCeEEEecccccc--------------------------------------------
Confidence 478999999999999999999999999999874311
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
|. -..++.+.+....++.++. +++++.|..+...+ +...|.+.++. ++.+|.|++|
T Consensus 259 --~~---------------~D~ei~~~l~~~l~~~gi~--~~~~~~v~~~~~~~-~~~~v~~~~~~----~~~~D~vLvA 314 (542)
T 4b1b_A 259 --RG---------------FDQQCAVKVKLYMEEQGVM--FKNGILPKKLTKMD-DKILVEFSDKT----SELYDTVLYA 314 (542)
T ss_dssp --TT---------------SCHHHHHHHHHHHHHTTCE--EEETCCEEEEEEET-TEEEEEETTSC----EEEESEEEEC
T ss_pred --cc---------------cchhHHHHHHHHHHhhcce--eecceEEEEEEecC-CeEEEEEcCCC----eEEEEEEEEc
Confidence 00 0157888899999999998 99999999998876 55666665543 6789999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| -+|+..
T Consensus 315 vG--R~Pnt~ 322 (542)
T 4b1b_A 315 IG--RKGDID 322 (542)
T ss_dssp SC--EEESCG
T ss_pred cc--ccCCcc
Confidence 99 677664
No 214
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=98.45 E-value=9.6e-07 Score=83.35 Aligned_cols=104 Identities=16% Similarity=0.172 Sum_probs=77.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.
T Consensus 145 ~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~------------------------------------------- 181 (320)
T 1trb_A 145 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR------------------------------------------- 181 (320)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC-------------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc-------------------------------------------
Confidence 4689999999999999999999999999999864220
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-C-CceEEEEEcEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-D-DVVEEETFDAVV 159 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~-~~~~~~~~d~VV 159 (446)
....+.+.+.+.+++.+++ ++++++|.++....+....|++.+. . ++..++.+|.||
T Consensus 182 -------------------~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv 240 (320)
T 1trb_A 182 -------------------AEKILIKRLMDKVENGNII--LHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLF 240 (320)
T ss_dssp -------------------CCHHHHHHHHHHHHTSSEE--EECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEE
T ss_pred -------------------cCHHHHHHHHHhcccCCeE--EEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEE
Confidence 0135566677777778887 8999999999876422234666652 1 333578999999
Q ss_pred EccCCCCCCccC
Q 013303 160 VCNGHFSVPRLA 171 (446)
Q Consensus 160 vAtG~~s~p~~p 171 (446)
+|+| ..|+.+
T Consensus 241 ~a~G--~~p~~~ 250 (320)
T 1trb_A 241 VAIG--HSPNTA 250 (320)
T ss_dssp ECSC--EEESCG
T ss_pred EEeC--CCCChH
Confidence 9999 566543
No 215
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=98.45 E-value=6.7e-07 Score=94.39 Aligned_cols=39 Identities=38% Similarity=0.626 Sum_probs=36.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~ 40 (446)
.+||+|||||++|+++|..|++.|++|+|+|+.+.+||.
T Consensus 336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggr 374 (776)
T 4gut_A 336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGR 374 (776)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceece
Confidence 369999999999999999999999999999999989883
No 216
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=98.43 E-value=7e-07 Score=89.89 Aligned_cols=102 Identities=21% Similarity=0.233 Sum_probs=77.1
Q ss_pred CCeEEEECcChHHHHHHHHHHH----CCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLR----EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~ 77 (446)
.++|+|||||+.|+.+|..|++ .|.+|+++++.+.+.
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~--------------------------------------- 220 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM--------------------------------------- 220 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT---------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccc---------------------------------------
Confidence 4789999999999999999987 478899998754210
Q ss_pred cccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcE
Q 013303 78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (446)
Q Consensus 78 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~ 157 (446)
...++ .++.+++.+..++.|+. ++++++|.+++..+ +...|++.++. ++.+|.
T Consensus 221 ------------------~~~l~--~~~~~~~~~~l~~~GV~--v~~~~~V~~i~~~~-~~~~v~l~dG~----~i~aD~ 273 (493)
T 1m6i_A 221 ------------------GKILP--EYLSNWTMEKVRREGVK--VMPNAIVQSVGVSS-GKLLIKLKDGR----KVETDH 273 (493)
T ss_dssp ------------------TTTSC--HHHHHHHHHHHHTTTCE--EECSCCEEEEEEET-TEEEEEETTSC----EEEESE
T ss_pred ------------------cccCC--HHHHHHHHHHHHhcCCE--EEeCCEEEEEEecC-CeEEEEECCCC----EEECCE
Confidence 00111 46777888888888988 99999999998654 44556655443 789999
Q ss_pred EEEccCCCCCCccC
Q 013303 158 VVVCNGHFSVPRLA 171 (446)
Q Consensus 158 VVvAtG~~s~p~~p 171 (446)
||+|+| ..|+..
T Consensus 274 Vv~a~G--~~pn~~ 285 (493)
T 1m6i_A 274 IVAAVG--LEPNVE 285 (493)
T ss_dssp EEECCC--EEECCT
T ss_pred EEECCC--CCccHH
Confidence 999999 566643
No 217
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=98.42 E-value=9.3e-07 Score=88.29 Aligned_cols=102 Identities=14% Similarity=0.216 Sum_probs=79.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~------------------------------------------ 207 (463)
T 4dna_A 170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILS------------------------------------------ 207 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc------------------------------------------
Confidence 47899999999999999999999999999998753310
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEE-EEeCCCceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVK-SRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~-~~~~~~~~~~~~~d~VVv 160 (446)
.+ ..++.+.+.+.+++.|++ ++++++|.+++..+++...|+ +.++ . +.+|.||+
T Consensus 208 ----------------~~--~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~~g----~-i~aD~Vv~ 262 (463)
T 4dna_A 208 ----------------RF--DQDMRRGLHAAMEEKGIR--ILCEDIIQSVSADADGRRVATTMKHG----E-IVADQVML 262 (463)
T ss_dssp ----------------TS--CHHHHHHHHHHHHHTTCE--EECSCCEEEEEECTTSCEEEEESSSC----E-EEESEEEE
T ss_pred ----------------cc--CHHHHHHHHHHHHHCCCE--EECCCEEEEEEEcCCCEEEEEEcCCC----e-EEeCEEEE
Confidence 00 157788888889999998 999999999988653445555 4332 2 89999999
Q ss_pred ccCCCCCCccCC
Q 013303 161 CNGHFSVPRLAQ 172 (446)
Q Consensus 161 AtG~~s~p~~p~ 172 (446)
|+| ..|+...
T Consensus 263 a~G--~~p~~~~ 272 (463)
T 4dna_A 263 ALG--RMPNTNG 272 (463)
T ss_dssp CSC--EEESCTT
T ss_pred eeC--cccCCCC
Confidence 999 5666543
No 218
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=98.42 E-value=1.4e-07 Score=94.61 Aligned_cols=43 Identities=37% Similarity=0.487 Sum_probs=39.4
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCCCcCceeee
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~~~GG~w~~ 43 (446)
|++||+|||||++||+||.+|++.|. +|+|||+++.+||....
T Consensus 1 m~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t 45 (477)
T 3nks_A 1 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRS 45 (477)
T ss_dssp -CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCE
T ss_pred CCceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEE
Confidence 67899999999999999999999999 99999999999997654
No 219
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=98.40 E-value=1.8e-06 Score=89.28 Aligned_cols=40 Identities=28% Similarity=0.454 Sum_probs=36.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCcee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w 41 (446)
.+||+|||||++|+++|..|++.|++|+|+|+.+..||.+
T Consensus 46 ~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~ 85 (623)
T 3pl8_A 46 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK 85 (623)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence 3699999999999999999999999999999998888744
No 220
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.40 E-value=4.7e-07 Score=87.51 Aligned_cols=93 Identities=26% Similarity=0.353 Sum_probs=74.3
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------- 180 (367)
T 1xhc_A 144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG------------------------------------------- 180 (367)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-------------------------------------------
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc-------------------------------------------
Confidence 6899999999999999999999999999998764311
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt 162 (446)
-..++.+++.+..++.|++ ++++++|.+++ . . .|++.++ . +.+|.||+|+
T Consensus 181 ------------------~~~~~~~~l~~~l~~~gV~--i~~~~~v~~i~--~-~--~v~~~~g----~-i~~D~vi~a~ 230 (367)
T 1xhc_A 181 ------------------LDEELSNMIKDMLEETGVK--FFLNSELLEAN--E-E--GVLTNSG----F-IEGKVKICAI 230 (367)
T ss_dssp ------------------CCHHHHHHHHHHHHHTTEE--EECSCCEEEEC--S-S--EEEETTE----E-EECSCEEEEC
T ss_pred ------------------CCHHHHHHHHHHHHHCCCE--EEcCCEEEEEE--e-e--EEEECCC----E-EEcCEEEECc
Confidence 0157788888889999988 99999999986 2 2 3444322 3 8999999999
Q ss_pred CCCCCCcc
Q 013303 163 GHFSVPRL 170 (446)
Q Consensus 163 G~~s~p~~ 170 (446)
| ..|+.
T Consensus 231 G--~~p~~ 236 (367)
T 1xhc_A 231 G--IVPNV 236 (367)
T ss_dssp C--EEECC
T ss_pred C--CCcCH
Confidence 9 66664
No 221
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=98.40 E-value=1.4e-06 Score=82.77 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=77.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||+|..|+.+|..|++.|.+|+++++.+.+.
T Consensus 152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~------------------------------------------- 188 (335)
T 2zbw_A 152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFR------------------------------------------- 188 (335)
T ss_dssp TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCC-------------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccC-------------------------------------------
Confidence 4689999999999999999999999999999865220
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVv 160 (446)
...+..+.+.+..++.+++ ++++++|.+++..+ +...|++... +++..++.+|.||+
T Consensus 189 -------------------~~~~~~~~l~~~l~~~gv~--v~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~ 246 (335)
T 2zbw_A 189 -------------------AHEASVKELMKAHEEGRLE--VLTPYELRRVEGDE-RVRWAVVFHNQTQEELALEVDAVLI 246 (335)
T ss_dssp -------------------SCHHHHHHHHHHHHTTSSE--EETTEEEEEEEESS-SEEEEEEEETTTCCEEEEECSEEEE
T ss_pred -------------------ccHHHHHHHHhccccCCeE--EecCCcceeEccCC-CeeEEEEEECCCCceEEEecCEEEE
Confidence 0134556677777777888 99999999998742 3335666643 33345789999999
Q ss_pred ccCCCCCCccC
Q 013303 161 CNGHFSVPRLA 171 (446)
Q Consensus 161 AtG~~s~p~~p 171 (446)
|+| ..|+.+
T Consensus 247 a~G--~~p~~~ 255 (335)
T 2zbw_A 247 LAG--YITKLG 255 (335)
T ss_dssp CCC--EEEECG
T ss_pred eec--CCCCch
Confidence 999 566543
No 222
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=98.38 E-value=3.2e-06 Score=85.65 Aligned_cols=106 Identities=14% Similarity=0.223 Sum_probs=79.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.. + .
T Consensus 210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~----l--------------------------------------- 245 (519)
T 3qfa_A 210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-L----L--------------------------------------- 245 (519)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-S----S---------------------------------------
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEeccc-c----c---------------------------------------
Confidence 3579999999999999999999999999999742 1 0
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC---CceEEEEEeCCC-ceEEEEEcE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES---NKWKVKSRKKDD-VVEEETFDA 157 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~---~~~~v~~~~~~~-~~~~~~~d~ 157 (446)
+ .+ ..++.+.+.+..++.|+. ++++++|..|....+ +...+++...++ +..++.+|.
T Consensus 246 --~-------------~~--d~~~~~~~~~~l~~~GV~--v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~ 306 (519)
T 3qfa_A 246 --R-------------GF--DQDMANKIGEHMEEHGIK--FIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNT 306 (519)
T ss_dssp --T-------------TS--CHHHHHHHHHHHHHTTCE--EEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESE
T ss_pred --c-------------cC--CHHHHHHHHHHHHHCCCE--EEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCE
Confidence 0 00 157788888888899998 999998888876542 345566555443 335678999
Q ss_pred EEEccCCCCCCccCC
Q 013303 158 VVVCNGHFSVPRLAQ 172 (446)
Q Consensus 158 VVvAtG~~s~p~~p~ 172 (446)
||+|+| ..|+...
T Consensus 307 vi~a~G--~~p~~~~ 319 (519)
T 3qfa_A 307 VMLAIG--RDACTRK 319 (519)
T ss_dssp EEECSC--EEESCSS
T ss_pred EEEecC--CcccCCC
Confidence 999999 6676543
No 223
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=98.38 E-value=1.4e-06 Score=86.96 Aligned_cols=104 Identities=16% Similarity=0.298 Sum_probs=74.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 210 (466)
T 3l8k_A 172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALIT----------------------------------------- 210 (466)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCC-----------------------------------------
Confidence 468999999999999999999999999999987633100
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
+ ...++.+.+.+..+ ++ ++++++|.+++..+++...|.+.+.+++..++.+|.||+|
T Consensus 211 -----------------~-~d~~~~~~l~~~l~---v~--i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a 267 (466)
T 3l8k_A 211 -----------------L-EDQDIVNTLLSILK---LN--IKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLA 267 (466)
T ss_dssp -----------------S-CCHHHHHHHHHHHC---CC--EECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEEC
T ss_pred -----------------C-CCHHHHHHHHhcCE---EE--EEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEEC
Confidence 0 01455555555443 55 8999999999875423455665531333457899999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| ..|+..
T Consensus 268 ~G--~~p~~~ 275 (466)
T 3l8k_A 268 AG--RRPVIP 275 (466)
T ss_dssp CC--EEECCC
T ss_pred cC--CCcccc
Confidence 99 667665
No 224
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=98.37 E-value=8.7e-07 Score=91.92 Aligned_cols=68 Identities=13% Similarity=-0.001 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHh--CCCCcEEeCeEEEEEEEcCC--Cce-EEEEEe-CCCceEEEEEcEEEEccCCCCCCccC
Q 013303 102 HEEVLRYLQNFAREF--GVDQVVRLHTEVLNARLVES--NKW-KVKSRK-KDDVVEEETFDAVVVCNGHFSVPRLA 171 (446)
Q Consensus 102 ~~~v~~yl~~~~~~~--~l~~~i~~~~~V~~v~~~~~--~~~-~v~~~~-~~~~~~~~~~d~VVvAtG~~s~p~~p 171 (446)
+..+...|.+.+++. ++. +..++.|+.+...++ +.. -|...+ .+++...+.++.||+|||.++.-..|
T Consensus 165 G~~i~~~L~~~a~~~~~gV~--i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g~~y~~ 238 (662)
T 3gyx_A 165 GESYKVIVAEAAKNALGQDR--IIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAVNVYRP 238 (662)
T ss_dssp ETSHHHHHHHHHHHHHCTTT--EECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSSSCC
T ss_pred HHHHHHHHHHHHHhcCCCcE--EEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCcccccccC
Confidence 457778888888887 888 999999999877652 132 233333 23455678999999999987654333
No 225
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=98.37 E-value=6.6e-07 Score=88.61 Aligned_cols=97 Identities=16% Similarity=0.236 Sum_probs=75.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...+
T Consensus 147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~---------------------------------------- 186 (437)
T 4eqs_A 147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLM---------------------------------------- 186 (437)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTS----------------------------------------
T ss_pred CcEEEEECCccchhhhHHHHHhcCCcceeeeeeccccccc----------------------------------------
Confidence 4689999999999999999999999999999976431100
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
..++.+.+.+..++.++. ++++++|.+++. ..+++.++. ++.+|.|++|
T Consensus 187 --------------------d~~~~~~~~~~l~~~gV~--i~~~~~v~~~~~-----~~v~~~~g~----~~~~D~vl~a 235 (437)
T 4eqs_A 187 --------------------DADMNQPILDELDKREIP--YRLNEEINAING-----NEITFKSGK----VEHYDMIIEG 235 (437)
T ss_dssp --------------------CGGGGHHHHHHHHHTTCC--EEESCCEEEEET-----TEEEETTSC----EEECSEEEEC
T ss_pred --------------------cchhHHHHHHHhhccceE--EEeccEEEEecC-----CeeeecCCe----EEeeeeEEEE
Confidence 024556778888888998 999999998863 235555543 7899999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| ..|+..
T Consensus 236 ~G--~~Pn~~ 243 (437)
T 4eqs_A 236 VG--THPNSK 243 (437)
T ss_dssp CC--EEESCG
T ss_pred ec--eecCcH
Confidence 99 666643
No 226
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=98.37 E-value=2.5e-07 Score=91.24 Aligned_cols=42 Identities=38% Similarity=0.621 Sum_probs=39.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCC-CcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~~GG~w~~ 43 (446)
.+||+|||||++||+||..|++.| ++|+|||+++.+||.+..
T Consensus 6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t 48 (424)
T 2b9w_A 6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHS 48 (424)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCC
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccc
Confidence 479999999999999999999999 899999999999997764
No 227
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=98.36 E-value=1.7e-07 Score=94.95 Aligned_cols=41 Identities=37% Similarity=0.612 Sum_probs=38.4
Q ss_pred CeEEEECcChHHHHHHHHHHHCC-CcEEEEeeCCCcCceeee
Q 013303 3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~~GG~w~~ 43 (446)
+||+|||||++||+||..|++.| ++|+|||+++++||.+..
T Consensus 9 ~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t 50 (516)
T 1rsg_A 9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQT 50 (516)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCE
T ss_pred CcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceee
Confidence 68999999999999999999999 999999999999997644
No 228
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=98.35 E-value=2.6e-07 Score=91.07 Aligned_cols=40 Identities=40% Similarity=0.756 Sum_probs=37.5
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~ 42 (446)
+||+|||||++||+||..|++.|++|+|||+++.+||...
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~ 40 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFT 40 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeE
Confidence 5899999999999999999999999999999999998654
No 229
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=98.34 E-value=4.3e-06 Score=86.28 Aligned_cols=105 Identities=22% Similarity=0.279 Sum_probs=76.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++. .+ .
T Consensus 286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~----l--------------------------------------- 321 (598)
T 2x8g_A 286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRS-IL----L--------------------------------------- 321 (598)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CS----S---------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cC----c---------------------------------------
Confidence 368999999999999999999999999999985 11 0
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEc-----CC---CceEEEEEeCCCceEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV-----ES---NKWKVKSRKKDDVVEEE 153 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~-----~~---~~~~v~~~~~~~~~~~~ 153 (446)
+.+ ..++.+++.+..++.|+. +++++.+.+|... .+ +...+.....+++...+
T Consensus 322 ---------------~~~--d~~~~~~~~~~l~~~gv~--i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~ 382 (598)
T 2x8g_A 322 ---------------RGF--DQQMAEKVGDYMENHGVK--FAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEE 382 (598)
T ss_dssp ---------------TTS--CHHHHHHHHHHHHHTTCE--EEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEE
T ss_pred ---------------CcC--CHHHHHHHHHHHHhCCCE--EEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEec
Confidence 000 146777888888888988 9999988888653 21 34555544334444455
Q ss_pred EEcEEEEccCCCCCCccC
Q 013303 154 TFDAVVVCNGHFSVPRLA 171 (446)
Q Consensus 154 ~~d~VVvAtG~~s~p~~p 171 (446)
.+|.||+|+| ..|+..
T Consensus 383 ~~D~vi~a~G--~~p~~~ 398 (598)
T 2x8g_A 383 EFETVIFAVG--REPQLS 398 (598)
T ss_dssp EESEEEECSC--EEECGG
T ss_pred cCCEEEEEeC--CccccC
Confidence 6999999999 666653
No 230
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=98.34 E-value=3.3e-07 Score=89.05 Aligned_cols=42 Identities=26% Similarity=0.441 Sum_probs=39.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
.+||+|||||++||++|..|++.|.+|+|+|+++.+||.|..
T Consensus 29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~ 70 (397)
T 3hdq_A 29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYD 70 (397)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCC
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccce
Confidence 469999999999999999999999999999999999998874
No 231
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=98.33 E-value=3.1e-07 Score=91.43 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=39.0
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
+||+|||||++||+||..|++.|++|+|+|+++.+||.+..
T Consensus 12 ~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 52 (453)
T 2bcg_G 12 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS 52 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccc
Confidence 68999999999999999999999999999999999998764
No 232
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=98.32 E-value=1.7e-06 Score=89.13 Aligned_cols=98 Identities=21% Similarity=0.255 Sum_probs=77.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 225 (588)
T 3ics_A 187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP----------------------------------------- 225 (588)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc-----------------------------------------
Confidence 478999999999999999999999999999986533100
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
-..++.+.+.+..++.|+. ++++++|.+++... + .|++.++. ++.+|.||+|
T Consensus 226 -------------------~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~-~--~v~~~~g~----~i~~D~Vi~a 277 (588)
T 3ics_A 226 -------------------IDYEMAAYVHEHMKNHDVE--LVFEDGVDALEENG-A--VVRLKSGS----VIQTDMLILA 277 (588)
T ss_dssp -------------------SCHHHHHHHHHHHHHTTCE--EECSCCEEEEEGGG-T--EEEETTSC----EEECSEEEEC
T ss_pred -------------------CCHHHHHHHHHHHHHcCCE--EEECCeEEEEecCC-C--EEEECCCC----EEEcCEEEEc
Confidence 0156778888888889998 99999999998654 2 45554443 7899999999
Q ss_pred cCCCCCCcc
Q 013303 162 NGHFSVPRL 170 (446)
Q Consensus 162 tG~~s~p~~ 170 (446)
+| ..|+.
T Consensus 278 ~G--~~p~~ 284 (588)
T 3ics_A 278 IG--VQPES 284 (588)
T ss_dssp SC--EEECC
T ss_pred cC--CCCCh
Confidence 99 56654
No 233
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=98.31 E-value=2e-06 Score=82.76 Aligned_cols=103 Identities=20% Similarity=0.261 Sum_probs=75.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~------------------------------------------ 200 (360)
T 3ab1_A 163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG------------------------------------------ 200 (360)
T ss_dssp TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS------------------------------------------
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC------------------------------------------
Confidence 46899999999999999999999999999998653200
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~~~~~~~d~VVv 160 (446)
...+.+.+.+..++.++. ++++++|.++...+ +. ..|++...+++..++.+|.||+
T Consensus 201 --------------------~~~~~~~l~~~~~~~gv~--i~~~~~v~~i~~~~-~~v~~v~~~~~~g~~~~i~~D~vi~ 257 (360)
T 3ab1_A 201 --------------------HGKTAHEVERARANGTID--VYLETEVASIEESN-GVLTRVHLRSSDGSKWTVEADRLLI 257 (360)
T ss_dssp --------------------CSHHHHSSHHHHHHTSEE--EESSEEEEEEEEET-TEEEEEEEEETTCCEEEEECSEEEE
T ss_pred --------------------CHHHHHHHHHHhhcCceE--EEcCcCHHHhccCC-CceEEEEEEecCCCeEEEeCCEEEE
Confidence 012344556666677777 89999999998764 33 2455553334446789999999
Q ss_pred ccCCCCCCccC
Q 013303 161 CNGHFSVPRLA 171 (446)
Q Consensus 161 AtG~~s~p~~p 171 (446)
|+| ..|+.+
T Consensus 258 a~G--~~p~~~ 266 (360)
T 3ab1_A 258 LIG--FKSNLG 266 (360)
T ss_dssp CCC--BCCSCG
T ss_pred CCC--CCCCHH
Confidence 999 566543
No 234
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=98.31 E-value=3.9e-07 Score=78.49 Aligned_cols=131 Identities=18% Similarity=0.214 Sum_probs=95.5
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEecCCcc-------------------cc-----ccCCCC-CCeeeccceeEE
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVADE-------------------TH-----EKQPGY-DNMWLHSMVERA 253 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~-------------------~~-----~~~~~~-~~v~~~~~v~~i 253 (446)
+|+|||+|++|+++|..|++.+.+|+++.+.+..- .+ +.+.+. .++... .|.++
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i 81 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV 81 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence 79999999999999999999999999999875300 00 000111 134455 77787
Q ss_pred ccCC---cEEecCCcEEeecEEEEecCccCCCC-C----CCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-
Q 013303 254 NEDG---TVVFRNGRVVSADVIMHCTGYKYNYP-F----LETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI- 324 (446)
Q Consensus 254 ~~~~---~v~~~dG~~~~~D~vi~atG~~~~~~-~----l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~- 324 (446)
..++ .+.+++| ++++|.||+|+|..|+.. . ++ .|.+.+|+..+ ++.|+||++|++....
T Consensus 82 ~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~~~~~g~~~~-~g~i~vd~~~~----------t~~~~i~a~GD~~~~~~ 149 (180)
T 2ywl_A 82 RDMGGVFEVETEEG-VEKAERLLLCTHKDPTLPSLLGLTRR-GAYIDTDEGGR----------TSYPRVYAAGVARGKVP 149 (180)
T ss_dssp EECSSSEEEECSSC-EEEEEEEEECCTTCCHHHHHHTCCEE-TTEECCCTTCB----------CSSTTEEECGGGGTCCS
T ss_pred EEcCCEEEEEECCC-EEEECEEEECCCCCCCccccCCCCcc-CceEEeCCCCC----------cCCCCEEEeecccCcch
Confidence 6533 2667788 899999999999998531 1 23 56677777665 5589999999886543
Q ss_pred -chhHHHHHHHHHHHHHcC
Q 013303 325 -PFPFFELQSKWIASVLSG 342 (446)
Q Consensus 325 -~~~~~~~qa~~~a~~l~g 342 (446)
..+.+..||+.+|.++.+
T Consensus 150 ~~~~~A~~~g~~aa~~i~~ 168 (180)
T 2ywl_A 150 GHAIISAGDGAYVAVHLVS 168 (180)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhHHHHHHHHHH
Confidence 556788899999998864
No 235
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=98.30 E-value=4e-07 Score=89.13 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=39.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHC-CCcEEEEeeCCCcCceeeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYT 44 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~~~GG~w~~~ 44 (446)
.+||+|||||++||++|..|++. |++|+|||+++.+||.+...
T Consensus 7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~ 50 (399)
T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSE 50 (399)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeec
Confidence 47999999999999999999999 99999999999999988653
No 236
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=98.29 E-value=4.1e-07 Score=92.29 Aligned_cols=42 Identities=33% Similarity=0.484 Sum_probs=38.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
++||+|||||++||+||..|++.|++|+|+|+++.+||....
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t 45 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYT 45 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCE
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceee
Confidence 478999999999999999999999999999999999997643
No 237
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=98.28 E-value=2.2e-06 Score=82.55 Aligned_cols=107 Identities=12% Similarity=0.164 Sum_probs=73.3
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
++|+|||+|++|+.+|..|++.|.+|+++++.+.+.... .
T Consensus 167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~-~--------------------------------------- 206 (369)
T 3d1c_A 167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPD-A--------------------------------------- 206 (369)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECC-------------------------------------------------
T ss_pred CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCC-C---------------------------------------
Confidence 589999999999999999999999999999875331000 0
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.+.+.-...+.+.+.+..++.+ +. ++++++|.+++..+ +...|++.++. ....+|.||+|
T Consensus 207 -------------d~~~~~~~~~~~~l~~~l~~~g~v~--~~~~~~v~~i~~~~-~~~~v~~~~g~---~~~~~d~vi~a 267 (369)
T 3d1c_A 207 -------------DPSVRLSPYTRQRLGNVIKQGARIE--MNVHYTVKDIDFNN-GQYHISFDSGQ---SVHTPHEPILA 267 (369)
T ss_dssp --------------CTTSCCHHHHHHHHHHHHTTCCEE--EECSCCEEEEEEET-TEEEEEESSSC---CEEESSCCEEC
T ss_pred -------------CCCccCCHHHHHHHHHHHhhCCcEE--EecCcEEEEEEecC-CceEEEecCCe---EeccCCceEEe
Confidence 0000011455677777777775 77 88899999997654 55667665543 12345999999
Q ss_pred cCCCCCCcc
Q 013303 162 NGHFSVPRL 170 (446)
Q Consensus 162 tG~~s~p~~ 170 (446)
|| ..|+.
T Consensus 268 ~G--~~~~~ 274 (369)
T 3d1c_A 268 TG--FDATK 274 (369)
T ss_dssp CC--BCGGG
T ss_pred ec--cCCcc
Confidence 99 66665
No 238
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=98.28 E-value=5e-07 Score=90.86 Aligned_cols=41 Identities=37% Similarity=0.522 Sum_probs=38.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~ 42 (446)
.+||+|||||++||+||..|++.|++|+|||+.+.+||.+.
T Consensus 11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 51 (489)
T 2jae_A 11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVW 51 (489)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCcee
Confidence 47999999999999999999999999999999999999643
No 239
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=98.27 E-value=7.8e-07 Score=87.02 Aligned_cols=89 Identities=13% Similarity=0.097 Sum_probs=64.4
Q ss_pred CCCEEEEEecCCcHHHHHHHHhccC--CEEEEEEecCCc----------------ccc----ccCCCCCCeeeccceeEE
Q 013303 196 QDQVVILIGHYASGLDIKRDLAGFA--KEVHIASRSVAD----------------ETH----EKQPGYDNMWLHSMVERA 253 (446)
Q Consensus 196 ~~k~VvVVG~G~sg~eia~~l~~~~--~~V~l~~r~~~~----------------~~~----~~~~~~~~v~~~~~v~~i 253 (446)
.||+|+|||+|+.|+-+|..|++.+ .+|+++.+++.- +.+ ..+.+.+--++...+..|
T Consensus 1 aGKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~~v~~i 80 (401)
T 3vrd_B 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHDSALGI 80 (401)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECSCEEEE
T ss_pred CcCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEeEEEEE
Confidence 4899999999999999999998765 489999876530 000 011111212345678888
Q ss_pred ccCCc-EEecCCcEEeecEEEEecCccCCCCC
Q 013303 254 NEDGT-VVFRNGRVVSADVIMHCTGYKYNYPF 284 (446)
Q Consensus 254 ~~~~~-v~~~dG~~~~~D~vi~atG~~~~~~~ 284 (446)
+.+.+ |.+.+|.++.+|.+|+|||.+++.+-
T Consensus 81 d~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~ 112 (401)
T 3vrd_B 81 DPDKKLVKTAGGAEFAYDRCVVAPGIDLLYDK 112 (401)
T ss_dssp ETTTTEEEETTSCEEECSEEEECCCEEECGGG
T ss_pred EccCcEEEecccceeecceeeeccCCccccCC
Confidence 76544 88899999999999999999887543
No 240
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=98.24 E-value=1.6e-06 Score=87.41 Aligned_cols=100 Identities=19% Similarity=0.284 Sum_probs=74.9
Q ss_pred CeEEEECcChHHHHHHHHHHHC--------------CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCc
Q 013303 3 RHVAVIGAGAAGLVVGHELLRE--------------GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKS 68 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~--------------g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~ 68 (446)
..++|||||+.|+.+|..|++. ..+|+++|..+.+.
T Consensus 218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il------------------------------ 267 (502)
T 4g6h_A 218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL------------------------------ 267 (502)
T ss_dssp TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS------------------------------
T ss_pred cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc------------------------------
Confidence 3699999999999999988753 36899999976441
Q ss_pred eeecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC
Q 013303 69 LRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (446)
Q Consensus 69 l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~ 148 (446)
+.| .+++.+++.+..++.|++ ++++++|++|+.. ...+.....++
T Consensus 268 ----------------------------~~~--~~~~~~~~~~~L~~~GV~--v~~~~~v~~v~~~---~~~~~~~~~dg 312 (502)
T 4g6h_A 268 ----------------------------NMF--EKKLSSYAQSHLENTSIK--VHLRTAVAKVEEK---QLLAKTKHEDG 312 (502)
T ss_dssp ----------------------------TTS--CHHHHHHHHHHHHHTTCE--EETTEEEEEECSS---EEEEEEECTTS
T ss_pred ----------------------------cCC--CHHHHHHHHHHHHhccee--eecCceEEEEeCC---ceEEEEEecCc
Confidence 111 167889999999999998 9999999999743 34444443333
Q ss_pred --ceEEEEEcEEEEccCCCCCCc
Q 013303 149 --VVEEETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 149 --~~~~~~~d~VVvAtG~~s~p~ 169 (446)
..+++.+|.||.|+| ..|+
T Consensus 313 ~~~~~~i~ad~viwa~G--v~~~ 333 (502)
T 4g6h_A 313 KITEETIPYGTLIWATG--NKAR 333 (502)
T ss_dssp CEEEEEEECSEEEECCC--EECC
T ss_pred ccceeeeccCEEEEccC--CcCC
Confidence 345799999999999 4544
No 241
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=98.24 E-value=2.6e-06 Score=84.66 Aligned_cols=98 Identities=21% Similarity=0.370 Sum_probs=72.6
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------ 186 (449)
T 3kd9_A 149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRR------------------------------------------ 186 (449)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT------------------------------------------
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh------------------------------------------
Confidence 68999999999999999999999999999997633100
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt 162 (446)
.+ ..++.+.+.+..++. +. +++++.|.+++... .......++ .++.+|.||+|+
T Consensus 187 ---------------~~--~~~~~~~l~~~l~~~-v~--i~~~~~v~~i~~~~--~v~~v~~~g----~~i~~D~Vv~a~ 240 (449)
T 3kd9_A 187 ---------------SF--DKEVTDILEEKLKKH-VN--LRLQEITMKIEGEE--RVEKVVTDA----GEYKAELVILAT 240 (449)
T ss_dssp ---------------TS--CHHHHHHHHHHHTTT-SE--EEESCCEEEEECSS--SCCEEEETT----EEEECSEEEECS
T ss_pred ---------------hc--CHHHHHHHHHHHHhC-cE--EEeCCeEEEEeccC--cEEEEEeCC----CEEECCEEEEee
Confidence 00 146777777777766 66 88999999997543 222222232 378999999999
Q ss_pred CCCCCCcc
Q 013303 163 GHFSVPRL 170 (446)
Q Consensus 163 G~~s~p~~ 170 (446)
| ..|+.
T Consensus 241 G--~~p~~ 246 (449)
T 3kd9_A 241 G--IKPNI 246 (449)
T ss_dssp C--EEECC
T ss_pred C--CccCH
Confidence 9 56654
No 242
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=98.23 E-value=5.4e-07 Score=89.66 Aligned_cols=41 Identities=39% Similarity=0.631 Sum_probs=38.5
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
+||+|||||++||+||..|++.|++|+|||+++.+||.+..
T Consensus 6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~ 46 (453)
T 2yg5_A 6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWT 46 (453)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCE
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceec
Confidence 69999999999999999999999999999999999998753
No 243
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=98.22 E-value=7.8e-06 Score=76.70 Aligned_cols=98 Identities=21% Similarity=0.261 Sum_probs=71.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||+|++|+.+|..|++.|.+|+++++.+.+ ..
T Consensus 144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~----~~-------------------------------------- 181 (310)
T 1fl2_A 144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM----KA-------------------------------------- 181 (310)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC----CS--------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCccc----Cc--------------------------------------
Confidence 368999999999999999999999999999986532 00
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCCce-EEEEEeC-CCceEEEEEcEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKW-KVKSRKK-DDVVEEETFDAV 158 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~-~v~~~~~-~~~~~~~~~d~V 158 (446)
... +.+.+.+ .++. ++++++|.++...+ +.. .|.+.+. .++..++.+|.|
T Consensus 182 --------------------~~~----~~~~l~~~~gv~--v~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~v 234 (310)
T 1fl2_A 182 --------------------DQV----LQDKLRSLKNVD--IILNAQTTEVKGDG-SKVVGLEYRDRVSGDIHNIELAGI 234 (310)
T ss_dssp --------------------CHH----HHHHHHTCTTEE--EESSEEEEEEEESS-SSEEEEEEEETTTCCEEEEECSEE
T ss_pred --------------------cHH----HHHHHhhCCCeE--EecCCceEEEEcCC-CcEEEEEEEECCCCcEEEEEcCEE
Confidence 012 2233333 4666 88999999998754 433 5666653 244567899999
Q ss_pred EEccCCCCCCcc
Q 013303 159 VVCNGHFSVPRL 170 (446)
Q Consensus 159 VvAtG~~s~p~~ 170 (446)
|+|+| ..|+.
T Consensus 235 i~a~G--~~p~~ 244 (310)
T 1fl2_A 235 FVQIG--LLPNT 244 (310)
T ss_dssp EECSC--EEESC
T ss_pred EEeeC--CccCc
Confidence 99999 56654
No 244
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=98.21 E-value=8.9e-07 Score=86.10 Aligned_cols=42 Identities=29% Similarity=0.652 Sum_probs=39.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
.+||+|||||++|+++|..|++.|++|+|||+++.+||.|..
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~ 44 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD 44 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCE
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCcccc
Confidence 469999999999999999999999999999999999998865
No 245
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=98.21 E-value=8.2e-07 Score=89.63 Aligned_cols=42 Identities=38% Similarity=0.555 Sum_probs=39.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
.+||+|||||++||++|..|++.|++|+|+|+++.+||.+..
T Consensus 13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~ 54 (504)
T 1sez_A 13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRS 54 (504)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence 479999999999999999999999999999999999997654
No 246
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=98.20 E-value=7.4e-06 Score=77.70 Aligned_cols=101 Identities=13% Similarity=0.160 Sum_probs=72.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~------------------------------------------ 210 (338)
T 3itj_A 173 NKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA------------------------------------------ 210 (338)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS------------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC------------------------------------------
Confidence 46899999999999999999999999999998653200
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVv 160 (446)
... ++....+..|+. ++++++|.++....+....|++.+. .++..++.+|.||+
T Consensus 211 --------------------~~~---~~~~l~~~~gv~--i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~ 265 (338)
T 3itj_A 211 --------------------STI---MQKRAEKNEKIE--ILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFY 265 (338)
T ss_dssp --------------------CHH---HHHHHHHCTTEE--EECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEE
T ss_pred --------------------CHH---HHHHHHhcCCeE--EeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEE
Confidence 012 222222334777 8899999999876522344777763 23446799999999
Q ss_pred ccCCCCCCccC
Q 013303 161 CNGHFSVPRLA 171 (446)
Q Consensus 161 AtG~~s~p~~p 171 (446)
|+| ..|+..
T Consensus 266 a~G--~~p~~~ 274 (338)
T 3itj_A 266 AIG--HTPATK 274 (338)
T ss_dssp CSC--EEECCG
T ss_pred EeC--CCCChh
Confidence 999 555543
No 247
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=98.20 E-value=7.8e-07 Score=85.97 Aligned_cols=42 Identities=29% Similarity=0.470 Sum_probs=39.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
++||+|||||++|+++|..|++.|++|+|+|+++.+||.+..
T Consensus 1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~ 42 (367)
T 1i8t_A 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT 42 (367)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEe
Confidence 369999999999999999999999999999999999998754
No 248
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=98.19 E-value=8.9e-07 Score=88.69 Aligned_cols=41 Identities=37% Similarity=0.568 Sum_probs=37.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~ 42 (446)
.+||+|||||++||+||..|++.|++|+|+|+++.+||...
T Consensus 16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~ 56 (478)
T 2ivd_A 16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVG 56 (478)
T ss_dssp -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceee
Confidence 47999999999999999999999999999999999998654
No 249
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=98.19 E-value=1.1e-06 Score=88.21 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=39.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCC-CcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~~GG~w~~ 43 (446)
.+||+|||||++||++|..|++.| .+|+|||+++.+||.|..
T Consensus 9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~ 51 (484)
T 4dsg_A 9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRS 51 (484)
T ss_dssp SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCE
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeee
Confidence 469999999999999999999998 799999999999999875
No 250
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=98.18 E-value=4e-06 Score=79.36 Aligned_cols=100 Identities=23% Similarity=0.201 Sum_probs=70.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. .
T Consensus 152 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~----~-------------------------------------- 189 (325)
T 2q7v_A 152 GKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR----A-------------------------------------- 189 (325)
T ss_dssp TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC----S--------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC----c--------------------------------------
Confidence 3689999999999999999999999999999864220 0
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVv 160 (446)
...+ .....++.++. ++++++|.++...+ ....|.+.+. +++..++.+|.||+
T Consensus 190 --------------------~~~~---~~~l~~~~gv~--i~~~~~v~~i~~~~-~v~~v~~~~~~~g~~~~i~~D~vi~ 243 (325)
T 2q7v_A 190 --------------------NKVA---QARAFANPKMK--FIWDTAVEEIQGAD-SVSGVKLRNLKTGEVSELATDGVFI 243 (325)
T ss_dssp --------------------CHHH---HHHHHTCTTEE--EECSEEEEEEEESS-SEEEEEEEETTTCCEEEEECSEEEE
T ss_pred --------------------chHH---HHHHHhcCCce--EecCCceEEEccCC-cEEEEEEEECCCCcEEEEEcCEEEE
Confidence 0122 22222334666 88899999998642 3335666642 33445789999999
Q ss_pred ccCCCCCCccC
Q 013303 161 CNGHFSVPRLA 171 (446)
Q Consensus 161 AtG~~s~p~~p 171 (446)
|+| ..|+.+
T Consensus 244 a~G--~~p~~~ 252 (325)
T 2q7v_A 244 FIG--HVPNTA 252 (325)
T ss_dssp CSC--EEESCG
T ss_pred ccC--CCCChH
Confidence 999 566643
No 251
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=98.17 E-value=4.3e-06 Score=78.52 Aligned_cols=101 Identities=13% Similarity=0.049 Sum_probs=70.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. .
T Consensus 143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~----~-------------------------------------- 180 (311)
T 2q0l_A 143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR----C-------------------------------------- 180 (311)
T ss_dssp TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC----S--------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC----C--------------------------------------
Confidence 4789999999999999999999999999999865220 0
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVv 160 (446)
..++.+ ...++.+++ ++++++|.++...++....|.+... +++..++.+|.||+
T Consensus 181 --------------------~~~~~~---~l~~~~gv~--v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~ 235 (311)
T 2q0l_A 181 --------------------APITLE---HAKNNDKIE--FLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFI 235 (311)
T ss_dssp --------------------CHHHHH---HHHTCTTEE--EETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEE
T ss_pred --------------------CHHHHH---HHhhCCCeE--EEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEE
Confidence 012222 222235666 8889999999876412235666642 23445789999999
Q ss_pred ccCCCCCCccC
Q 013303 161 CNGHFSVPRLA 171 (446)
Q Consensus 161 AtG~~s~p~~p 171 (446)
|+| ..|+.+
T Consensus 236 a~G--~~p~~~ 244 (311)
T 2q0l_A 236 FVG--YDVNNA 244 (311)
T ss_dssp CSC--EEECCG
T ss_pred Eec--CccChh
Confidence 999 566644
No 252
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=98.16 E-value=1.1e-06 Score=88.07 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=38.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~ 43 (446)
++||+|||||++||++|..|++.| ++|+|+|+++.+||.+..
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~ 47 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVAT 47 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCE
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEE
Confidence 479999999999999999999999 999999999999987554
No 253
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=98.16 E-value=5e-06 Score=78.87 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=71.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||+|..|+.+|..|++.|.+|+++++.+.+.
T Consensus 159 ~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~------------------------------------------- 195 (333)
T 1vdc_A 159 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR------------------------------------------- 195 (333)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC-------------------------------------------
T ss_pred CCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCC-------------------------------------------
Confidence 4689999999999999999999999999999865220
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCC-ce-EEEEEeC-CCceEEEEEcEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KW-KVKSRKK-DDVVEEETFDAV 158 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~-~~-~v~~~~~-~~~~~~~~~d~V 158 (446)
. .+.+ ..+..++.+++ ++++++|.++....++ .. .|.+.+. +++..++.+|.|
T Consensus 196 --------------~-----~~~~---~~~~~~~~gv~--i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~v 251 (333)
T 1vdc_A 196 --------------A-----SKIM---QQRALSNPKID--VIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGL 251 (333)
T ss_dssp --------------S-----CHHH---HHHHHTCTTEE--EECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEE
T ss_pred --------------c-----cHHH---HHHHHhCCCee--EecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEE
Confidence 0 0111 12333456776 8889999999875421 32 3666653 334467999999
Q ss_pred EEccCCCCCCccC
Q 013303 159 VVCNGHFSVPRLA 171 (446)
Q Consensus 159 VvAtG~~s~p~~p 171 (446)
|+|+| ..|+.+
T Consensus 252 i~a~G--~~p~~~ 262 (333)
T 1vdc_A 252 FFAIG--HEPATK 262 (333)
T ss_dssp EECSC--EEESCG
T ss_pred EEEeC--CccchH
Confidence 99999 566654
No 254
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=98.15 E-value=1.3e-06 Score=87.94 Aligned_cols=40 Identities=30% Similarity=0.518 Sum_probs=37.8
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~ 42 (446)
+||+|||||++||+||..|++.|++|+|+|+++.+||...
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~ 79 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSW 79 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCC
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcce
Confidence 6999999999999999999999999999999999998654
No 255
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=98.15 E-value=2.4e-06 Score=84.35 Aligned_cols=86 Identities=19% Similarity=0.253 Sum_probs=63.3
Q ss_pred CEEEEEecCCcHHHHHHHHhccC--CEEEEEEecCC-----------------ccc---cccCCCCCCee-eccceeEEc
Q 013303 198 QVVILIGHYASGLDIKRDLAGFA--KEVHIASRSVA-----------------DET---HEKQPGYDNMW-LHSMVERAN 254 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~--~~V~l~~r~~~-----------------~~~---~~~~~~~~~v~-~~~~v~~i~ 254 (446)
|+|||||+|+.|+.+|..|++.+ .+|+++.+++. ++. +..+.+..++. +...+++|+
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~~v~~Id 82 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESID 82 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSCEEEEE
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEeEEEEEE
Confidence 78999999999999999999865 68999988763 000 11111222332 345788887
Q ss_pred cCC-cEEecCCcEEeecEEEEecCccCCCC
Q 013303 255 EDG-TVVFRNGRVVSADVIMHCTGYKYNYP 283 (446)
Q Consensus 255 ~~~-~v~~~dG~~~~~D~vi~atG~~~~~~ 283 (446)
.+. .|+++||+++++|.+|+|||-++.++
T Consensus 83 ~~~~~V~~~~g~~i~YD~LViAtG~~~~~~ 112 (430)
T 3hyw_A 83 PDANTVTTQSGKKIEYDYLVIATGPKLVFG 112 (430)
T ss_dssp TTTTEEEETTCCEEECSEEEECCCCEEECC
T ss_pred CCCCEEEECCCCEEECCEEEEeCCCCccCC
Confidence 654 48899999999999999999876543
No 256
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=98.15 E-value=3.5e-06 Score=79.15 Aligned_cols=101 Identities=14% Similarity=0.115 Sum_probs=72.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+ ..
T Consensus 147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~----~~-------------------------------------- 184 (315)
T 3r9u_A 147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF----RA-------------------------------------- 184 (315)
T ss_dssp TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC----BS--------------------------------------
T ss_pred cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC----CC--------------------------------------
Confidence 468999999999999999999999999999986532 00
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.. +++....++.|+. ++++++|.++....+....|++...+++..++.+|.||+|
T Consensus 185 --------------------~~---~~~~~~~~~~gv~--~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a 239 (315)
T 3r9u_A 185 --------------------AP---STVEKVKKNEKIE--LITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTF 239 (315)
T ss_dssp --------------------CH---HHHHHHHHCTTEE--EECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEEC
T ss_pred --------------------CH---HHHHHHHhcCCeE--EEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEE
Confidence 01 2233444566777 8899999999876422234666533444567899999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| ..|+..
T Consensus 240 ~G--~~p~~~ 247 (315)
T 3r9u_A 240 VG--LNVRNE 247 (315)
T ss_dssp SC--EEECCG
T ss_pred Ec--CCCCch
Confidence 99 566544
No 257
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=98.15 E-value=1.3e-05 Score=75.63 Aligned_cols=99 Identities=14% Similarity=0.120 Sum_probs=71.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.
T Consensus 155 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~------------------------------------------- 191 (319)
T 3cty_A 155 GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM------------------------------------------- 191 (319)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC-------------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC-------------------------------------------
Confidence 3689999999999999999999999999999864220
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCC-ceEEEEEeC-CCceEEEEEcEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKK-DDVVEEETFDAVV 159 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~-~~~v~~~~~-~~~~~~~~~d~VV 159 (446)
....+ .+.+.+.++. ++++++|.++...+ + ...|.+.+. +++..++.+|.||
T Consensus 192 -------------------~~~~l----~~~l~~~gv~--i~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~vi 245 (319)
T 3cty_A 192 -------------------CENAY----VQEIKKRNIP--YIMNAQVTEIVGDG-KKVTGVKYKDRTTGEEKLIETDGVF 245 (319)
T ss_dssp -------------------SCHHH----HHHHHHTTCC--EECSEEEEEEEESS-SSEEEEEEEETTTCCEEEECCSEEE
T ss_pred -------------------CCHHH----HHHHhcCCcE--EEcCCeEEEEecCC-ceEEEEEEEEcCCCceEEEecCEEE
Confidence 00222 2333467888 99999999998754 3 234666542 3344578999999
Q ss_pred EccCCCCCCccC
Q 013303 160 VCNGHFSVPRLA 171 (446)
Q Consensus 160 vAtG~~s~p~~p 171 (446)
+|+| ..|+.+
T Consensus 246 ~a~G--~~p~~~ 255 (319)
T 3cty_A 246 IYVG--LIPQTS 255 (319)
T ss_dssp ECCC--EEECCG
T ss_pred EeeC--CccChH
Confidence 9999 556543
No 258
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=98.15 E-value=1.4e-05 Score=75.27 Aligned_cols=99 Identities=19% Similarity=0.193 Sum_probs=72.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------ 191 (323)
T 3f8d_A 154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA------------------------------------------ 191 (323)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS------------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc------------------------------------------
Confidence 46899999999999999999999999999998653200
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVv 160 (446)
.. +++....++.++. ++++++|.++...+ ....|++.+. .++..++.+|.||+
T Consensus 192 --------------------~~---~~~~~~~~~~gv~--~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~~~~D~vv~ 245 (323)
T 3f8d_A 192 --------------------QP---IYVETVKKKPNVE--FVLNSVVKEIKGDK-VVKQVVVENLKTGEIKELNVNGVFI 245 (323)
T ss_dssp --------------------CH---HHHHHHHTCTTEE--EECSEEEEEEEESS-SEEEEEEEETTTCCEEEEECSEEEE
T ss_pred --------------------CH---HHHHHHHhCCCcE--EEeCCEEEEEeccC-ceeEEEEEECCCCceEEEEcCEEEE
Confidence 01 2233344445776 88899999998764 4455777762 23445789999999
Q ss_pred ccCCCCCCcc
Q 013303 161 CNGHFSVPRL 170 (446)
Q Consensus 161 AtG~~s~p~~ 170 (446)
|+| ..|+.
T Consensus 246 a~G--~~p~~ 253 (323)
T 3f8d_A 246 EIG--FDPPT 253 (323)
T ss_dssp CCC--EECCH
T ss_pred EEC--CCCCh
Confidence 999 56664
No 259
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=98.12 E-value=3.6e-06 Score=78.27 Aligned_cols=88 Identities=19% Similarity=0.232 Sum_probs=64.1
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCcccc-----------------------ccCCCCCCee-eccceeEE
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETH-----------------------EKQPGYDNMW-LHSMVERA 253 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~~-----------------------~~~~~~~~v~-~~~~v~~i 253 (446)
.+|+|||+|++|+.+|..|++.+.+|+++.+.+....+ ..+.+...+. ....+..+
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 82 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGRVTDA 82 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEESCEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEeEEEEE
Confidence 47999999999999999999999999999975431000 1112222232 25577777
Q ss_pred ccCC---cEEecCCcEEeecEEEEecCccCCCCCC
Q 013303 254 NEDG---TVVFRNGRVVSADVIMHCTGYKYNYPFL 285 (446)
Q Consensus 254 ~~~~---~v~~~dG~~~~~D~vi~atG~~~~~~~l 285 (446)
..++ .|.+.+|+++.+|.||+|||..|..|-+
T Consensus 83 ~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~ 117 (297)
T 3fbs_A 83 KGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEI 117 (297)
T ss_dssp EEETTEEEEEETTSCEEEEEEEEECCCCEEECCCC
T ss_pred EEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCC
Confidence 6543 3778899999999999999999876543
No 260
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=98.11 E-value=1.5e-06 Score=87.48 Aligned_cols=41 Identities=41% Similarity=0.603 Sum_probs=38.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~ 42 (446)
++||+|||||++||++|..|++.|++|+|+|+++.+||.+.
T Consensus 33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~ 73 (498)
T 2iid_A 33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVR 73 (498)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcee
Confidence 47999999999999999999999999999999999999764
No 261
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=98.11 E-value=4e-06 Score=82.99 Aligned_cols=88 Identities=16% Similarity=0.247 Sum_probs=65.1
Q ss_pred CEEEEEecCCcHHHHHHHHhc---cCCEEEEEEecCCc-----------------cc---cccC-CCCCCeeeccceeEE
Q 013303 198 QVVILIGHYASGLDIKRDLAG---FAKEVHIASRSVAD-----------------ET---HEKQ-PGYDNMWLHSMVERA 253 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~---~~~~V~l~~r~~~~-----------------~~---~~~~-~~~~~v~~~~~v~~i 253 (446)
++|+|||+|++|+.+|..|++ .+.+|+++.+.+.. +. +..+ .+.+--.....+..+
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~~~v~~i 84 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQI 84 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEECSCEEEE
T ss_pred CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEEeEEEEE
Confidence 689999999999999999998 78899999887641 00 0011 112212234678888
Q ss_pred ccCC-cEEecCCcEEeecEEEEecCccCCCCCC
Q 013303 254 NEDG-TVVFRNGRVVSADVIMHCTGYKYNYPFL 285 (446)
Q Consensus 254 ~~~~-~v~~~dG~~~~~D~vi~atG~~~~~~~l 285 (446)
+.++ .|.+++|+++.+|.||+|||..++.+-+
T Consensus 85 d~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~i 117 (437)
T 3sx6_A 85 DAEAQNITLADGNTVHYDYLMIATGPKLAFENV 117 (437)
T ss_dssp ETTTTEEEETTSCEEECSEEEECCCCEECGGGS
T ss_pred EcCCCEEEECCCCEEECCEEEECCCCCcCcccC
Confidence 7654 4888999999999999999999876543
No 262
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=98.11 E-value=1.6e-06 Score=85.66 Aligned_cols=35 Identities=34% Similarity=0.581 Sum_probs=31.8
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
|++||+||||||+|+++|..|++.|++|+|||+.+
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 45799999999999999999999999999999975
No 263
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=98.06 E-value=8.5e-06 Score=79.16 Aligned_cols=88 Identities=9% Similarity=0.145 Sum_probs=65.7
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc--------ccc------ccCCC---------CCCeeeccceeEEc
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD--------ETH------EKQPG---------YDNMWLHSMVERAN 254 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~--------~~~------~~~~~---------~~~v~~~~~v~~i~ 254 (446)
-+|+|||+|+.|+..|..|...+.+|+++.+.+.. ..+ ..+.. ...+.....|.+++
T Consensus 10 ~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~id 89 (385)
T 3klj_A 10 TKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATSID 89 (385)
T ss_dssp CSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEEEE
T ss_pred CCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEEEE
Confidence 47999999999999999998788899999887641 000 11110 11344556788887
Q ss_pred cCC-cEEecCCcEEeecEEEEecCccCCCCCC
Q 013303 255 EDG-TVVFRNGRVVSADVIMHCTGYKYNYPFL 285 (446)
Q Consensus 255 ~~~-~v~~~dG~~~~~D~vi~atG~~~~~~~l 285 (446)
.+. .|.+++|+++.+|.+|+|||.+|..|-+
T Consensus 90 ~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i 121 (385)
T 3klj_A 90 PNNKLVTLKSGEKIKYEKLIIASGSIANKIKV 121 (385)
T ss_dssp TTTTEEEETTSCEEECSEEEECCCEEECCCCC
T ss_pred CCCCEEEECCCCEEECCEEEEecCCCcCCCCC
Confidence 654 4888999999999999999999876644
No 264
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=98.06 E-value=4e-06 Score=79.79 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=70.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. .
T Consensus 155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~----~-------------------------------------- 192 (335)
T 2a87_A 155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFR----A-------------------------------------- 192 (335)
T ss_dssp TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCS----S--------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCC----c--------------------------------------
Confidence 4789999999999999999999999999999865320 0
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVv 160 (446)
. +.+ .....++.+++ ++++++|.++.... +...|.+.+. +++..++.+|.||+
T Consensus 193 ----~----------------~~~---~~~~~~~~gV~--v~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~ 246 (335)
T 2a87_A 193 ----S----------------KIM---LDRARNNDKIR--FLTNHTVVAVDGDT-TVTGLRVRDTNTGAETTLPVTGVFV 246 (335)
T ss_dssp ----C----------------TTH---HHHHHHCTTEE--EECSEEEEEEECSS-SCCEEEEEEETTSCCEEECCSCEEE
T ss_pred ----c----------------HHH---HHHHhccCCcE--EEeCceeEEEecCC-cEeEEEEEEcCCCceEEeecCEEEE
Confidence 0 011 11233456776 88899999998654 3334555542 23335789999999
Q ss_pred ccCCCCCCccCC
Q 013303 161 CNGHFSVPRLAQ 172 (446)
Q Consensus 161 AtG~~s~p~~p~ 172 (446)
|+| ..|+.+-
T Consensus 247 a~G--~~p~~~~ 256 (335)
T 2a87_A 247 AIG--HEPRSGL 256 (335)
T ss_dssp CSC--EEECCTT
T ss_pred ccC--CccChhH
Confidence 999 6666543
No 265
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=98.04 E-value=2.6e-05 Score=73.67 Aligned_cols=99 Identities=18% Similarity=0.136 Sum_probs=73.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.
T Consensus 154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~------------------------------------------- 190 (332)
T 3lzw_A 154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFR------------------------------------------- 190 (332)
T ss_dssp TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCS-------------------------------------------
T ss_pred CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCC-------------------------------------------
Confidence 4689999999999999999999999999999865320
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VVv 160 (446)
...... +.+++.++. ++++++|.++...+ +...|++.+.. ++..++.+|.||+
T Consensus 191 -------------------~~~~~~----~~l~~~gv~--~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~~~~D~vv~ 244 (332)
T 3lzw_A 191 -------------------AHEHSV----ENLHASKVN--VLTPFVPAELIGED-KIEQLVLEEVKGDRKEILEIDDLIV 244 (332)
T ss_dssp -------------------SCHHHH----HHHHHSSCE--EETTEEEEEEECSS-SCCEEEEEETTSCCEEEEECSEEEE
T ss_pred -------------------ccHHHH----HHHhcCCeE--EEeCceeeEEecCC-ceEEEEEEecCCCceEEEECCEEEE
Confidence 001111 224567887 89999999998765 45667777643 3456799999999
Q ss_pred ccCCCCCCccC
Q 013303 161 CNGHFSVPRLA 171 (446)
Q Consensus 161 AtG~~s~p~~p 171 (446)
|+| ..|+.+
T Consensus 245 a~G--~~p~~~ 253 (332)
T 3lzw_A 245 NYG--FVSSLG 253 (332)
T ss_dssp CCC--EECCCG
T ss_pred eec--cCCCch
Confidence 999 566544
No 266
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=98.03 E-value=3.1e-06 Score=83.70 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=39.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
.+||+|||||++|+++|..|++.|++|+|+|+++.+||.+..
T Consensus 6 ~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s 47 (433)
T 1d5t_A 6 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSS 47 (433)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCE
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccc
Confidence 468999999999999999999999999999999999998765
No 267
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=98.01 E-value=7.9e-06 Score=80.68 Aligned_cols=88 Identities=18% Similarity=0.210 Sum_probs=64.4
Q ss_pred CEEEEEecCCcHHHHHHHHhc--cCCEEEEEEecCCc-----------------cc---cccCCCCCCe-eeccceeEEc
Q 013303 198 QVVILIGHYASGLDIKRDLAG--FAKEVHIASRSVAD-----------------ET---HEKQPGYDNM-WLHSMVERAN 254 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~--~~~~V~l~~r~~~~-----------------~~---~~~~~~~~~v-~~~~~v~~i~ 254 (446)
++|+|||+|+.|+..|..|++ .+.+|+++.+.+.. +. +..+.+..++ .....+..++
T Consensus 3 ~~vvIIGgG~aGl~aA~~L~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id 82 (430)
T 3h28_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESID 82 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSCEEEEE
T ss_pred CCEEEECccHHHHHHHHHHHcCCCCCeEEEECCCCCCCcCCCcchhccCccCHHHHHHHHHHHHHhcCCEEEEEEEEEEE
Confidence 689999999999999999999 67899999987641 00 0111111122 1235777787
Q ss_pred cCC-cEEecCCcEEeecEEEEecCccCCCCCC
Q 013303 255 EDG-TVVFRNGRVVSADVIMHCTGYKYNYPFL 285 (446)
Q Consensus 255 ~~~-~v~~~dG~~~~~D~vi~atG~~~~~~~l 285 (446)
.+. .|.+++|+++.+|.||+|||..+++|-+
T Consensus 83 ~~~~~v~~~~g~~i~~d~liiAtG~~~~~pg~ 114 (430)
T 3h28_A 83 PDANTVTTQSGKKIEYDYLVIATGPKLVFGAE 114 (430)
T ss_dssp TTTTEEEETTCCEEECSEEEECCCCEEECCSB
T ss_pred CCCCEEEECCCcEEECCEEEEcCCcccccCCC
Confidence 654 3888899999999999999999887743
No 268
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=97.99 E-value=7.2e-06 Score=80.35 Aligned_cols=87 Identities=14% Similarity=0.169 Sum_probs=61.9
Q ss_pred CEEEEEecCCcHHHHHHHHhc---cCCEEEEEEecCCcc---c-----------------ccc-CCCCC-CeeeccceeE
Q 013303 198 QVVILIGHYASGLDIKRDLAG---FAKEVHIASRSVADE---T-----------------HEK-QPGYD-NMWLHSMVER 252 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~---~~~~V~l~~r~~~~~---~-----------------~~~-~~~~~-~v~~~~~v~~ 252 (446)
++|+|||+|.+|+.+|..|++ .+.+|+++.+++... . +.. +.+.+ ++. ...+..
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~-~~~v~~ 80 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQ-EGTVEK 80 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEE-ECEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEE-EeeEEE
Confidence 589999999999999999999 889999999876300 0 000 01111 222 236777
Q ss_pred EccCC-cEEecCCcE----EeecEEEEecCccCCCCCC
Q 013303 253 ANEDG-TVVFRNGRV----VSADVIMHCTGYKYNYPFL 285 (446)
Q Consensus 253 i~~~~-~v~~~dG~~----~~~D~vi~atG~~~~~~~l 285 (446)
++.++ .|.+.+|+. +++|.||+|||..|+.|-+
T Consensus 81 i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~i 118 (409)
T 3h8l_A 81 IDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELV 118 (409)
T ss_dssp EETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGS
T ss_pred EeCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCC
Confidence 76543 488888764 8899999999999876533
No 269
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=97.98 E-value=4.6e-06 Score=86.96 Aligned_cols=42 Identities=31% Similarity=0.497 Sum_probs=38.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
.++|+|||||++||++|..|++.|++|+|||+.+.+||.+..
T Consensus 107 ~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 148 (662)
T 2z3y_A 107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVAT 148 (662)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCE
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccc
Confidence 479999999999999999999999999999999999996543
No 270
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=97.97 E-value=4.4e-06 Score=83.53 Aligned_cols=42 Identities=26% Similarity=0.476 Sum_probs=38.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~~~GG~w~~ 43 (446)
.+||+|||||++||++|..|++.|+ +|+|+|+++.+||.|..
T Consensus 4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~ 46 (472)
T 1b37_A 4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHK 46 (472)
T ss_dssp -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCE
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceee
Confidence 4799999999999999999999998 89999999999998764
No 271
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=97.97 E-value=6.3e-06 Score=79.36 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=32.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++||+|||||++|+++|.+|++.|++|+|+|+..
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~ 39 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence 4699999999999999999999999999999975
No 272
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=97.95 E-value=3.6e-05 Score=77.84 Aligned_cols=99 Identities=21% Similarity=0.267 Sum_probs=71.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||.+|+.+|..|++.|.+|+++++.+.+. .
T Consensus 355 ~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~----~-------------------------------------- 392 (521)
T 1hyu_A 355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK----A-------------------------------------- 392 (521)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCC----S--------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccC----c--------------------------------------
Confidence 3689999999999999999999999999999865320 0
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCCce-EEEEEeC-CCceEEEEEcEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKW-KVKSRKK-DDVVEEETFDAV 158 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~-~v~~~~~-~~~~~~~~~d~V 158 (446)
. .++.+...+ .|+. ++++++|+.+...+ +.. .|.+.+. .++..++.+|.|
T Consensus 393 -------------------~-----~~l~~~l~~~~gV~--v~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~v 445 (521)
T 1hyu_A 393 -------------------D-----QVLQDKVRSLKNVD--IILNAQTTEVKGDG-SKVVGLEYRDRVSGDIHSVALAGI 445 (521)
T ss_dssp -------------------C-----HHHHHHHTTCTTEE--EECSEEEEEEEECS-SSEEEEEEEETTTCCEEEEECSEE
T ss_pred -------------------C-----HHHHHHHhcCCCcE--EEeCCEEEEEEcCC-CcEEEEEEEeCCCCceEEEEcCEE
Confidence 0 123333333 3666 88899999998654 333 4666653 344567899999
Q ss_pred EEccCCCCCCccC
Q 013303 159 VVCNGHFSVPRLA 171 (446)
Q Consensus 159 VvAtG~~s~p~~p 171 (446)
|+|+| ..|+..
T Consensus 446 i~a~G--~~pn~~ 456 (521)
T 1hyu_A 446 FVQIG--LLPNTH 456 (521)
T ss_dssp EECCC--EEESCG
T ss_pred EECcC--CCCCch
Confidence 99999 566543
No 273
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=97.95 E-value=5.5e-06 Score=88.10 Aligned_cols=41 Identities=32% Similarity=0.524 Sum_probs=38.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~ 42 (446)
.++|+|||||++||++|..|++.|++|+|||+.+.+||.+.
T Consensus 278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~ 318 (852)
T 2xag_A 278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVA 318 (852)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCcee
Confidence 46999999999999999999999999999999999998643
No 274
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=97.95 E-value=5.2e-06 Score=82.35 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=38.7
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
+||+|||||++|+++|..|++.|.+|+++|+++.+||.+..
T Consensus 21 ~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s 61 (475)
T 3p1w_A 21 YDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETAS 61 (475)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccc
Confidence 69999999999999999999999999999999999997654
No 275
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=97.93 E-value=3.1e-05 Score=81.16 Aligned_cols=101 Identities=24% Similarity=0.175 Sum_probs=72.3
Q ss_pred CeEEEEC--cChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303 3 RHVAVIG--AGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (446)
Q Consensus 3 ~~V~IIG--aG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~ 80 (446)
++|+||| +|..|+.+|..|++.|.+|+++++.+.+......
T Consensus 524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~------------------------------------- 566 (690)
T 3k30_A 524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNN------------------------------------- 566 (690)
T ss_dssp SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGG-------------------------------------
T ss_pred CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccccccccc-------------------------------------
Confidence 5799999 9999999999999999999999987643211100
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv 160 (446)
..+...+.+.+++.|+. ++.+++|++|+.. .-.+.... .++..++.+|.||+
T Consensus 567 ----------------------~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~---~~~v~~~~-~~~~~~i~aD~VV~ 618 (690)
T 3k30_A 567 ----------------------TFEVNRIQRRLIENGVA--RVTDHAVVAVGAG---GVTVRDTY-ASIERELECDAVVM 618 (690)
T ss_dssp ----------------------GTCHHHHHHHHHHTTCE--EEESEEEEEEETT---EEEEEETT-TCCEEEEECSEEEE
T ss_pred ----------------------chhHHHHHHHHHHCCCE--EEcCcEEEEEECC---eEEEEEcc-CCeEEEEECCEEEE
Confidence 11235566677778888 9999999999743 22332211 22345789999999
Q ss_pred ccCCCCCCcc
Q 013303 161 CNGHFSVPRL 170 (446)
Q Consensus 161 AtG~~s~p~~ 170 (446)
|+| ..|+.
T Consensus 619 A~G--~~p~~ 626 (690)
T 3k30_A 619 VTA--RLPRE 626 (690)
T ss_dssp ESC--EEECC
T ss_pred CCC--CCCCh
Confidence 999 55553
No 276
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=97.92 E-value=1.3e-05 Score=76.62 Aligned_cols=39 Identities=33% Similarity=0.430 Sum_probs=35.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~ 40 (446)
|+||+|||||+||+.||..|++.|.+|+|+|+.+..+..
T Consensus 1 m~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp 39 (443)
T 3g5s_A 1 MERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTP 39 (443)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCS
T ss_pred CCCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCc
Confidence 489999999999999999999999999999998755443
No 277
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=97.89 E-value=3.6e-05 Score=72.21 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=31.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|||||..|+-+|..|++.|.+|+++++..
T Consensus 152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~ 185 (314)
T 4a5l_A 152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRD 185 (314)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred CCeEEEECCChHHHHHHHHHHHhCCeeeeecccc
Confidence 3789999999999999999999999999999753
No 278
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=97.86 E-value=2.8e-05 Score=72.14 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=30.5
Q ss_pred CEEEEEecCCcHHHHHHHHhcc-CCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGF-AKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~-~~~V~l~~r~~ 230 (446)
..|+|||+|++|+.+|..|++. +.+|+++.+.+
T Consensus 40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~ 73 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV 73 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 4799999999999999999997 99999999875
No 279
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=97.86 E-value=7.3e-06 Score=78.50 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=31.6
Q ss_pred CeEEEECcChHHHHHHHHHHHCC------CcEEEEeeCCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREG------HTVVVYEKGEQ 36 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g------~~v~v~e~~~~ 36 (446)
+||+|||||++|+++|.+|++.| .+|+|+|+...
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~ 40 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT 40 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence 59999999999999999999998 89999999763
No 280
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=97.83 E-value=2.6e-05 Score=73.04 Aligned_cols=87 Identities=16% Similarity=0.251 Sum_probs=59.4
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEecCCccc-----------------------cccCCCCCCee-eccceeEEc
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVADET-----------------------HEKQPGYDNMW-LHSMVERAN 254 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~-----------------------~~~~~~~~~v~-~~~~v~~i~ 254 (446)
.|+|||+|+.|+..|..+++.+.+|+++.+....-. ..++.++..+. ....+..+.
T Consensus 8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (304)
T 4fk1_A 8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMIT 87 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEee
Confidence 699999999999999999999999999987543000 01112222221 222333332
Q ss_pred c--CC--cEEecCCcEEeecEEEEecCccCCCCCC
Q 013303 255 E--DG--TVVFRNGRVVSADVIMHCTGYKYNYPFL 285 (446)
Q Consensus 255 ~--~~--~v~~~dG~~~~~D~vi~atG~~~~~~~l 285 (446)
. ++ .+.+.||+++.+|.||+|||.+|..|-+
T Consensus 88 ~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i 122 (304)
T 4fk1_A 88 KQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSI 122 (304)
T ss_dssp ECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSC
T ss_pred ecCCCcEEEEECCCCEEEeCEEEEccCCccccccc
Confidence 2 11 2778899999999999999999876644
No 281
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=97.72 E-value=9.4e-05 Score=73.66 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=31.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~ 230 (464)
T 2xve_A 197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRT 230 (464)
T ss_dssp TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSS
T ss_pred CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECC
Confidence 4789999999999999999999999999999865
No 282
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=97.64 E-value=0.00016 Score=71.85 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=30.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHC--------------------CC-cEEEEeeCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE--------------------GH-TVVVYEKGEQ 36 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~--------------------g~-~v~v~e~~~~ 36 (446)
.++|+|||+|..|+-+|..|++. |. +|+|+++...
T Consensus 147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~ 202 (456)
T 1lqt_A 147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP 202 (456)
T ss_dssp SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCCh
Confidence 36899999999999999999874 54 8999998753
No 283
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=97.60 E-value=0.00029 Score=70.02 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=30.1
Q ss_pred CCeEEEECcChHHHHHHHHHH--------------------HCCC-cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELL--------------------REGH-TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~--------------------~~g~-~v~v~e~~~ 35 (446)
.++|+|||+|..|+-+|..|+ +.|. +|+|+++..
T Consensus 145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~ 199 (460)
T 1cjc_A 145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG 199 (460)
T ss_dssp SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCC
Confidence 368999999999999999999 5677 699999875
No 284
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=97.60 E-value=9.7e-05 Score=73.30 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=30.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 35 (446)
.++|+|||||..|+-+|..+.+.|. +|+++++.+
T Consensus 264 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~ 298 (456)
T 2vdc_G 264 GKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRD 298 (456)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCC
Confidence 3689999999999999999999998 499998864
No 285
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=97.58 E-value=2.4e-05 Score=81.16 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=33.5
Q ss_pred CeEEEECcChHHHHHHHHHHHCC--------CcEEEEeeCC-Cc
Q 013303 3 RHVAVIGAGAAGLVVGHELLREG--------HTVVVYEKGE-QV 37 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g--------~~v~v~e~~~-~~ 37 (446)
++|+|||||++||+||..|.+.| ++|+|||+++ ++
T Consensus 57 ~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 57 YRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred CeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence 68999999999999999999998 9999999998 88
No 286
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=97.58 E-value=0.00018 Score=78.09 Aligned_cols=95 Identities=17% Similarity=0.146 Sum_probs=70.7
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
++|+|||+|+.|+.+|..|++.|.+|+|+|+.+.+
T Consensus 285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~--------------------------------------------- 319 (965)
T 2gag_A 285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSI--------------------------------------------- 319 (965)
T ss_dssp SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSC---------------------------------------------
T ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCcc---------------------------------------------
Confidence 68999999999999999999999999999986522
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEc-CCCceEEEEEe--C---CCceEEEEEc
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV-ESNKWKVKSRK--K---DDVVEEETFD 156 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~-~~~~~~v~~~~--~---~~~~~~~~~d 156 (446)
. .. .+.+++.|+. +++++.|.+|... ++....|++.+ . .++..++.+|
T Consensus 320 -----------------~--~~-----~~~l~~~GV~--v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D 373 (965)
T 2gag_A 320 -----------------S--AA-----AAQAVADGVQ--VISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEAD 373 (965)
T ss_dssp -----------------C--HH-----HHHHHHTTCC--EEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECS
T ss_pred -----------------c--hh-----HHHHHhCCeE--EEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcC
Confidence 0 01 2345677888 9999999999873 21223455554 1 1223579999
Q ss_pred EEEEccCCCCCCcc
Q 013303 157 AVVVCNGHFSVPRL 170 (446)
Q Consensus 157 ~VVvAtG~~s~p~~ 170 (446)
.||+|+| ..|+.
T Consensus 374 ~Vv~a~G--~~P~~ 385 (965)
T 2gag_A 374 VLAVAGG--FNPVV 385 (965)
T ss_dssp EEEEECC--EEECC
T ss_pred EEEECCC--cCcCh
Confidence 9999999 66664
No 287
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=97.55 E-value=7.9e-05 Score=69.87 Aligned_cols=87 Identities=14% Similarity=0.199 Sum_probs=56.7
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEecCCccc------cccCCCCC--------------------CeeeccceeE
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVADET------HEKQPGYD--------------------NMWLHSMVER 252 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~------~~~~~~~~--------------------~v~~~~~v~~ 252 (446)
.|+|||+|+.|+..|..|++.|.+|+++.+...--. +..++... .+.....+..
T Consensus 8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (312)
T 4gcm_A 8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSV 87 (312)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeee
Confidence 699999999999999999999999999987543100 00111110 0111111111
Q ss_pred Ec-cCCcEEecCCcEEeecEEEEecCccCCCCCC
Q 013303 253 AN-EDGTVVFRNGRVVSADVIMHCTGYKYNYPFL 285 (446)
Q Consensus 253 i~-~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l 285 (446)
.. ....+...+++++.+|.||+|||.+|..|-+
T Consensus 88 ~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~i 121 (312)
T 4gcm_A 88 EDKGEYKVINFGNKELTAKAVIIATGAEYKKIGV 121 (312)
T ss_dssp EECSSCEEEECSSCEEEEEEEEECCCEEECCCCC
T ss_pred eeeecceeeccCCeEEEeceeEEcccCccCcCCC
Confidence 21 2233566788899999999999998876544
No 288
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=97.52 E-value=9.6e-05 Score=70.37 Aligned_cols=80 Identities=20% Similarity=0.103 Sum_probs=56.4
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc----------------cccccCC----------------------
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----------------ETHEKQP---------------------- 239 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~----------------~~~~~~~---------------------- 239 (446)
.+|+|||+|++|+.+|..|++.+.+|+++.+.+.. .....+.
T Consensus 4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (357)
T 4a9w_A 4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA 83 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence 47999999999999999999999999999987530 0000000
Q ss_pred ----C-CCCeeeccceeEEccCCc----EEecCCcEEeecEEEEecCc
Q 013303 240 ----G-YDNMWLHSMVERANEDGT----VVFRNGRVVSADVIMHCTGY 278 (446)
Q Consensus 240 ----~-~~~v~~~~~v~~i~~~~~----v~~~dG~~~~~D~vi~atG~ 278 (446)
+ ...+..+..|.++..++. |.+.+| ++.+|.||+|||.
T Consensus 84 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~ 130 (357)
T 4a9w_A 84 QYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGT 130 (357)
T ss_dssp HHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCS
T ss_pred HHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCC
Confidence 0 013445567777764432 555566 8999999999995
No 289
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=97.49 E-value=0.00014 Score=75.91 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCCcc
Q 013303 106 LRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRL 170 (446)
Q Consensus 106 ~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~ 170 (446)
..++.+..++.|++ ++.+++|.+++. +..+++ . +++..++.+|.||+|+| ..|+.
T Consensus 576 ~~~~~~~l~~~GV~--v~~~~~v~~i~~---~~v~~~-~--~G~~~~i~~D~Vi~a~G--~~p~~ 630 (671)
T 1ps9_A 576 GWIHRTTLLSRGVK--MIPGVSYQKIDD---DGLHVV-I--NGETQVLAVDNVVICAG--QEPNR 630 (671)
T ss_dssp HHHHHHHHHHTTCE--EECSCEEEEEET---TEEEEE-E--TTEEEEECCSEEEECCC--EEECC
T ss_pred HHHHHHHHHhcCCE--EEeCcEEEEEeC---CeEEEe-c--CCeEEEEeCCEEEECCC--ccccH
Confidence 34566667778888 999999999873 333333 2 33345789999999999 56653
No 290
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=97.49 E-value=0.00027 Score=70.01 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=31.5
Q ss_pred CCEEEEEecCCcHHHHHHHHhccCC--EEEEEEecC
Q 013303 197 DQVVILIGHYASGLDIKRDLAGFAK--EVHIASRSV 230 (446)
Q Consensus 197 ~k~VvVVG~G~sg~eia~~l~~~~~--~V~l~~r~~ 230 (446)
.++|+|||+|++|+-+|..|++.|. +|+++.+.+
T Consensus 6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~ 41 (447)
T 2gv8_A 6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG 41 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCC
Confidence 4689999999999999999999999 999999864
No 291
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=97.49 E-value=0.0002 Score=75.50 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=31.5
Q ss_pred CCeEEEEC--cChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIG--AGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIG--aG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+||| ||..|+.+|..|++.|.+|+++++.+
T Consensus 528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~ 563 (729)
T 1o94_A 528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH 563 (729)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence 36899999 99999999999999999999999865
No 292
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=97.48 E-value=0.00014 Score=73.83 Aligned_cols=87 Identities=20% Similarity=0.162 Sum_probs=62.2
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc------c------------cc------------------------
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD------E------------TH------------------------ 235 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~------~------------~~------------------------ 235 (446)
.+|+|||+|.+|+-+|..|++.|.+|+++.+.+.. . .+
T Consensus 22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei 101 (549)
T 4ap3_A 22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEI 101 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHH
T ss_pred CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHHH
Confidence 58999999999999999999999999999985420 0 00
Q ss_pred --------ccCCCCCCeeeccceeEEccC-C----cEEecCCcEEeecEEEEecC--ccCCCCC
Q 013303 236 --------EKQPGYDNMWLHSMVERANED-G----TVVFRNGRVVSADVIMHCTG--YKYNYPF 284 (446)
Q Consensus 236 --------~~~~~~~~v~~~~~v~~i~~~-~----~v~~~dG~~~~~D~vi~atG--~~~~~~~ 284 (446)
.+..-...+..+..|.++..+ . .|.+.+|+++.+|.||+||| ..|..|-
T Consensus 102 ~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ 165 (549)
T 4ap3_A 102 LAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPA 165 (549)
T ss_dssp HHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCC
T ss_pred HHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCC
Confidence 000000145566777777532 2 37888999999999999999 4555543
No 293
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=97.47 E-value=0.00013 Score=70.40 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=31.9
Q ss_pred CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
..+|+|||+|++|+.+|..|++.|.+|+++.+.+.
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 45 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSE 45 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 46899999999999999999999999999998653
No 294
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=97.46 E-value=0.00021 Score=72.40 Aligned_cols=87 Identities=15% Similarity=0.120 Sum_probs=62.0
Q ss_pred CEEEEEecCCcHHHHHHHHh-ccCCEEEEEEecCCc------------------ccc-----------------------
Q 013303 198 QVVILIGHYASGLDIKRDLA-GFAKEVHIASRSVAD------------------ETH----------------------- 235 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~-~~~~~V~l~~r~~~~------------------~~~----------------------- 235 (446)
.+|+|||+|.+|+-+|..|+ +.|.+|+++.+.+.. ..+
T Consensus 9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e 88 (540)
T 3gwf_A 9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE 88 (540)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence 47999999999999999999 999999999986420 000
Q ss_pred ---------ccCCCCCCeeeccceeEEccCC-----cEEecCCcEEeecEEEEecCc--cCCCCC
Q 013303 236 ---------EKQPGYDNMWLHSMVERANEDG-----TVVFRNGRVVSADVIMHCTGY--KYNYPF 284 (446)
Q Consensus 236 ---------~~~~~~~~v~~~~~v~~i~~~~-----~v~~~dG~~~~~D~vi~atG~--~~~~~~ 284 (446)
.+..-...+..+..|.++..++ .|.+.+|+++.+|.||+|||. .|..|-
T Consensus 89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ 153 (540)
T 3gwf_A 89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPN 153 (540)
T ss_dssp HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCC
T ss_pred HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCC
Confidence 0000001455567777775322 378889999999999999995 555443
No 295
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=97.43 E-value=0.00012 Score=74.32 Aligned_cols=88 Identities=15% Similarity=0.096 Sum_probs=60.6
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc---------------------------c-----cc----------
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD---------------------------E-----TH---------- 235 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~---------------------------~-----~~---------- 235 (446)
.+|+|||+|.+|+-+|..|++.+.+|+++.+.+.. . ..
T Consensus 10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei 89 (545)
T 3uox_A 10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM 89 (545)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence 58999999999999999999999999999986420 0 00
Q ss_pred --------ccCCCCCCeeeccceeEEccCC-----cEEecCCcEEeecEEEEecC--ccCCCCCC
Q 013303 236 --------EKQPGYDNMWLHSMVERANEDG-----TVVFRNGRVVSADVIMHCTG--YKYNYPFL 285 (446)
Q Consensus 236 --------~~~~~~~~v~~~~~v~~i~~~~-----~v~~~dG~~~~~D~vi~atG--~~~~~~~l 285 (446)
.+..-...+.++..|.++..+. .|.+.+|+++.+|.||+||| ..|..|-+
T Consensus 90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~i 154 (545)
T 3uox_A 90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDI 154 (545)
T ss_dssp HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCC
T ss_pred HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCC
Confidence 0000001345566777775321 37888999999999999999 45555433
No 296
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=97.40 E-value=0.0004 Score=67.44 Aligned_cols=33 Identities=24% Similarity=0.212 Sum_probs=30.6
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
-+|+|||+|++|+=+|..|++.|.+|+++.|.+
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~ 34 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNS 34 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 379999999999999999999999999998754
No 297
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=97.38 E-value=0.00032 Score=68.41 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=32.2
Q ss_pred CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 196 ~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
+..+|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~ 57 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE 57 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 446899999999999999999999999999998763
No 298
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=97.36 E-value=0.00042 Score=67.37 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=31.5
Q ss_pred CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
..+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 38 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP 38 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 3689999999999999999999999999998865
No 299
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=97.28 E-value=0.0011 Score=72.45 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=30.4
Q ss_pred CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 35 (446)
++|+|||||..|+-+|..|++.|. +|+++++.+
T Consensus 333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~ 366 (1025)
T 1gte_A 333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 366 (1025)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence 589999999999999999999996 899999864
No 300
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=97.28 E-value=0.00019 Score=73.01 Aligned_cols=35 Identities=26% Similarity=0.552 Sum_probs=32.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 36 (446)
.+|++|||||++|+++|..|++.|++|+|+|+...
T Consensus 7 ~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~ 41 (546)
T 1kdg_A 7 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP 41 (546)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred ceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 47999999999999999999999999999999764
No 301
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=97.26 E-value=0.0002 Score=71.88 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=61.8
Q ss_pred CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCcc-------------cc---------------------------
Q 013303 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADE-------------TH--------------------------- 235 (446)
Q Consensus 196 ~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~-------------~~--------------------------- 235 (446)
...+|+|||+|++|+.+|..|++.|.+|+++.+.+... .+
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~ 170 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQL 170 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHH
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHH
Confidence 45799999999999999999999999999999875300 00
Q ss_pred ---ccCCC-CCCeeeccceeEEccC---C---cEEe--c-CC--cEEeecEEEEecCccCCC
Q 013303 236 ---EKQPG-YDNMWLHSMVERANED---G---TVVF--R-NG--RVVSADVIMHCTGYKYNY 282 (446)
Q Consensus 236 ---~~~~~-~~~v~~~~~v~~i~~~---~---~v~~--~-dG--~~~~~D~vi~atG~~~~~ 282 (446)
+.+.+ ...+.....|.++..+ + .|.+ . +| .++.+|.||.|+|..+..
T Consensus 171 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~ 232 (497)
T 2bry_A 171 LLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVP 232 (497)
T ss_dssp HHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCC
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccc
Confidence 00001 1245556678888642 2 2556 3 56 468899999999998754
No 302
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=97.21 E-value=0.0012 Score=64.13 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=31.5
Q ss_pred CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
..+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 59 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN 59 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4689999999999999999999999999999864
No 303
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=97.17 E-value=0.00043 Score=65.41 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=30.7
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 3 ~dV~IIGaG~~Gl~~A~~L~~~G~~V~vlE~~~ 35 (336)
T 1yvv_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR 35 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred ceEEEECCcHHHHHHHHHHHHCCCcEEEEECCC
Confidence 479999999999999999999999999999864
No 304
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=97.13 E-value=0.00024 Score=71.89 Aligned_cols=35 Identities=26% Similarity=0.504 Sum_probs=31.6
Q ss_pred CCeEEEECcChHHHHHHHHHHH-CCCcEEEEeeCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLR-EGHTVVVYEKGEQ 36 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~-~g~~v~v~e~~~~ 36 (446)
.+|++|||||+||+.+|..|++ .+++|+|+|++..
T Consensus 17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~ 52 (526)
T 3t37_A 17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE 52 (526)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred CeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence 3799999999999999999998 5789999999754
No 305
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=97.11 E-value=0.00021 Score=72.38 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=31.9
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV 37 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~ 37 (446)
+|++|||||+||+.+|..|++ |.+|+|+|++...
T Consensus 27 yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~ 60 (536)
T 1ju2_A 27 YDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP 60 (536)
T ss_dssp EEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred ccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence 699999999999999999999 9999999998654
No 306
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=97.09 E-value=0.00064 Score=66.01 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=30.6
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~ 39 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQAR 39 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 479999999999999999999999999998764
No 307
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=97.08 E-value=0.00039 Score=71.19 Aligned_cols=42 Identities=26% Similarity=0.433 Sum_probs=39.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
.+||+|||+|..|...|..|++.|.+|+++|+++.+||.|..
T Consensus 8 ~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~ 49 (650)
T 1vg0_A 8 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWAS 49 (650)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCcccc
Confidence 579999999999999999999999999999999999998753
No 308
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=97.06 E-value=0.00026 Score=71.59 Aligned_cols=34 Identities=26% Similarity=0.183 Sum_probs=31.4
Q ss_pred CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.++|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~ 140 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK 140 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccC
Confidence 4689999999999999999999999999999874
No 309
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=97.05 E-value=0.00079 Score=68.35 Aligned_cols=82 Identities=21% Similarity=0.223 Sum_probs=58.2
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----------c--------ccc--c-------------cC------
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------D--------ETH--E-------------KQ------ 238 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~----------~--------~~~--~-------------~~------ 238 (446)
.+|+|||+|.+|+-+|..|++.|.+|+++.+.+. + ..+ . ..
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i 96 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI 96 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence 4799999999999999999999999999987642 0 000 0 00
Q ss_pred --------CC---CCCeeeccceeEEccC---C--cEEecCCcEEeecEEEEecCcc
Q 013303 239 --------PG---YDNMWLHSMVERANED---G--TVVFRNGRVVSADVIMHCTGYK 279 (446)
Q Consensus 239 --------~~---~~~v~~~~~v~~i~~~---~--~v~~~dG~~~~~D~vi~atG~~ 279 (446)
.+ ...+..+..|.++..+ + .|.+.+|+++.+|.||.|||..
T Consensus 97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~ 153 (542)
T 1w4x_A 97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL 153 (542)
T ss_dssp HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCC
Confidence 00 0134455677776532 1 2777889899999999999963
No 310
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=97.00 E-value=0.00033 Score=68.60 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=30.8
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 28 ~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~ 60 (417)
T 3v76_A 28 QDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHAR 60 (417)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 479999999999999999999999999998865
No 311
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=96.97 E-value=0.00039 Score=70.87 Aligned_cols=35 Identities=29% Similarity=0.411 Sum_probs=32.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCC-CcEEEEeeCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQ 36 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~ 36 (446)
.+|++|||||.||+++|..|++.+ .+|+|+|+...
T Consensus 6 ~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~ 41 (577)
T 3q9t_A 6 HFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG 41 (577)
T ss_dssp EEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred cccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 479999999999999999999987 79999999865
No 312
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=96.95 E-value=0.00066 Score=68.24 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=33.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G 38 (446)
.+|++|||+|++|+.+|..|++.|.+|+|+|+....+
T Consensus 5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~ 41 (504)
T 1n4w_A 5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN 41 (504)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 3699999999999999999999999999999987543
No 313
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=96.93 E-value=0.0017 Score=61.64 Aligned_cols=33 Identities=12% Similarity=0.023 Sum_probs=30.0
Q ss_pred CEEEEEecCCcHHHHHHHHhc---cCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAG---FAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~---~~~~V~l~~r~~ 230 (446)
++|+|||+|.+|+-+|..|++ .|.+|+++.++.
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~ 37 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD 37 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence 379999999999999999999 899999998753
No 314
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=96.79 E-value=0.00066 Score=69.19 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=31.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHC-CCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~ 35 (446)
.+|++|||||.||+++|..|++. +.+|+|+|+..
T Consensus 19 ~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~ 53 (583)
T 3qvp_A 19 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS 53 (583)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 37999999999999999999975 79999999987
No 315
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=96.79 E-value=0.00094 Score=67.17 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=32.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 36 (446)
.+|++|||+|++|+.+|..|++.|.+|+|+|+...
T Consensus 11 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~ 45 (507)
T 1coy_A 11 RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS 45 (507)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 36999999999999999999999999999998754
No 316
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=96.72 E-value=0.00097 Score=65.14 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=30.8
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~ 38 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK 38 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 479999999999999999999999999999865
No 317
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=96.67 E-value=0.00067 Score=68.99 Aligned_cols=36 Identities=36% Similarity=0.394 Sum_probs=32.7
Q ss_pred CCeEEEECcChHHHHHHHHHHH-CCCcEEEEeeCCCc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLR-EGHTVVVYEKGEQV 37 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~-~g~~v~v~e~~~~~ 37 (446)
.+|++|||||.||+.+|..|++ .+.+|+|+|+....
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~ 38 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD 38 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence 5799999999999999999998 68999999997654
No 318
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=96.66 E-value=0.00097 Score=67.71 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=32.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHC-CCcEEEEeeCCCc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQV 37 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~~~ 37 (446)
.+|++|||||++|+++|..|++. |.+|+|+|+....
T Consensus 13 ~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~ 49 (546)
T 2jbv_A 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD 49 (546)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence 36999999999999999999998 8999999998644
No 319
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=96.59 E-value=0.0021 Score=65.82 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=30.2
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
-.|+|||+|..|+++|..+++.|.+|.++.+.
T Consensus 29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~ 60 (651)
T 3ces_A 29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHN 60 (651)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEECChHHHHHHHHHHHhCCCCEEEEeec
Confidence 47999999999999999999999999999976
No 320
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=96.54 E-value=0.0017 Score=66.45 Aligned_cols=35 Identities=31% Similarity=0.384 Sum_probs=32.1
Q ss_pred CeEEEECcChHHHHHHHHHHH-CCCcEEEEeeCCCc
Q 013303 3 RHVAVIGAGAAGLVVGHELLR-EGHTVVVYEKGEQV 37 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~-~g~~v~v~e~~~~~ 37 (446)
+|++|||||++|+++|..|++ .|.+|+|+|+....
T Consensus 25 ~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~ 60 (587)
T 1gpe_A 25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60 (587)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence 699999999999999999999 79999999997543
No 321
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=96.51 E-value=0.0023 Score=50.04 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=31.7
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCC-CcEEEEeeCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGE 35 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~ 35 (446)
|+++|+|+|+|..|..++..|.+.| .+|+++++++
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence 3578999999999999999999999 8999999864
No 322
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=96.49 E-value=0.00097 Score=58.88 Aligned_cols=76 Identities=7% Similarity=0.085 Sum_probs=49.2
Q ss_pred CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCccccccCCCCCCeeeccceeEEccCCcEEecCCcEEeecEEE
Q 013303 194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIM 273 (446)
Q Consensus 194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~~~~~~~~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi 273 (446)
++++++|+|||+|.+|.--+..|.+.|.+|+++.+...+ .+..+...+.+. -+... |..+.--.+|.||
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~-~l~~l~~~~~i~------~i~~~----~~~~dL~~adLVI 96 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSA-EINEWEAKGQLR------VKRKK----VGEEDLLNVFFIV 96 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCH-HHHHHHHTTSCE------EECSC----CCGGGSSSCSEEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCH-HHHHHHHcCCcE------EEECC----CCHhHhCCCCEEE
Confidence 357899999999999999999999999999999865431 122222112221 11110 1111112389999
Q ss_pred EecCccC
Q 013303 274 HCTGYKY 280 (446)
Q Consensus 274 ~atG~~~ 280 (446)
.|||-..
T Consensus 97 aAT~d~~ 103 (223)
T 3dfz_A 97 VATNDQA 103 (223)
T ss_dssp ECCCCTH
T ss_pred ECCCCHH
Confidence 9998764
No 323
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=96.49 E-value=0.0015 Score=63.64 Aligned_cols=32 Identities=31% Similarity=0.330 Sum_probs=30.2
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
+|+|||+|++|+-+|..+++.|.+|+++.+.+
T Consensus 6 dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~ 37 (401)
T 2gqf_A 6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK 37 (401)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 69999999999999999999999999999865
No 324
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=96.44 E-value=0.0026 Score=64.89 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=30.1
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
-.|+|||+|..|++.|..+++.|.+|.++.+.
T Consensus 28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~ 59 (637)
T 2zxi_A 28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLN 59 (637)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEec
Confidence 46999999999999999999999999999976
No 325
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=96.41 E-value=0.0035 Score=50.98 Aligned_cols=34 Identities=32% Similarity=0.408 Sum_probs=31.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~ 39 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK 39 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4689999999999999999999999999999864
No 326
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=96.41 E-value=0.0039 Score=50.74 Aligned_cols=34 Identities=29% Similarity=0.531 Sum_probs=31.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+.+|+|||+|..|...|+.|.+.|++|+++|+++
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 4689999999999999999999999999999865
No 327
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=96.33 E-value=0.0027 Score=61.38 Aligned_cols=32 Identities=28% Similarity=0.237 Sum_probs=30.1
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 4 dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 35 (394)
T 1k0i_A 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35 (394)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 69999999999999999999999999999765
No 328
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=96.31 E-value=0.0052 Score=62.86 Aligned_cols=34 Identities=26% Similarity=0.273 Sum_probs=31.6
Q ss_pred CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
..+|+|||||.+|+-+|..|++.|.+|+++.+.+
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~ 56 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSA 56 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCC
Confidence 4689999999999999999999999999999874
No 329
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=96.31 E-value=0.0035 Score=64.11 Aligned_cols=32 Identities=16% Similarity=0.133 Sum_probs=30.4
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
-.|+|||+|..|++.|..+++.|.+|.++.+.
T Consensus 22 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~ 53 (641)
T 3cp8_A 22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSD 53 (641)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEEec
Confidence 58999999999999999999999999999986
No 330
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=96.30 E-value=0.0044 Score=51.42 Aligned_cols=34 Identities=29% Similarity=0.540 Sum_probs=31.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|||+|..|..+|..|.+.|.+|+++|+++
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3689999999999999999999999999999864
No 331
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=96.09 E-value=0.0035 Score=61.93 Aligned_cols=33 Identities=27% Similarity=0.188 Sum_probs=30.5
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
..|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~ 59 (447)
T 2i0z_A 27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN 59 (447)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence 469999999999999999999999999999765
No 332
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=96.07 E-value=0.0026 Score=61.45 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=30.8
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
..|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 5 ~dVvIvG~G~aGl~~A~~La~~G~~V~l~E~~~ 37 (397)
T 3cgv_A 5 YDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRP 37 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 369999999999999999999999999999876
No 333
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=96.07 E-value=0.029 Score=51.34 Aligned_cols=144 Identities=16% Similarity=0.229 Sum_probs=84.1
Q ss_pred CCCCEEEEEecCCcHHHHHHHHhccCC-EEEEEEecCCccccccCCCCCCeeeccceeEEccCCcEEecCCcEEeecEEE
Q 013303 195 FQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIM 273 (446)
Q Consensus 195 ~~~k~VvVVG~G~sg~eia~~l~~~~~-~V~l~~r~~~~~~~~~~~~~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi 273 (446)
..+++++|+|+|-.|.-++..|.+.|. +|+++.|+... .+.+.+. +. ...+.. +.+ +++|.||
T Consensus 120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~k--a~~La~~--~~----~~~~~~-----l~~---l~~DivI 183 (282)
T 3fbt_A 120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEK--TSEIYGE--FK----VISYDE-----LSN---LKGDVII 183 (282)
T ss_dssp CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHH--HHHHCTT--SE----EEEHHH-----HTT---CCCSEEE
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHH--HHHHHHh--cC----cccHHH-----HHh---ccCCEEE
Confidence 468999999999999999999999986 89999987641 1111111 10 011110 112 2799999
Q ss_pred Eec--CccCCC---CCCCCCCeeeeCCCCcccccccccCCCCCCCeE-----EecCCCccCchhHHHHHHHHHHHHHcCC
Q 013303 274 HCT--GYKYNY---PFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLS-----FVGIPQKVIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 274 ~at--G~~~~~---~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~-----~iG~~~~~~~~~~~~~qa~~~a~~l~g~ 343 (446)
-|| |..|+. | ++.. .+ .... -+|+-++.|. ++-+ ..|.. ......|...||...-+.|.|.
T Consensus 184 naTp~Gm~~~~~~~p-i~~~-~l--~~~~--~v~DlvY~P~--~T~ll~~A~~~G~~-~~~Gl~MLv~Qa~~~f~lwtg~ 254 (282)
T 3fbt_A 184 NCTPKGMYPKEGESP-VDKE-VV--AKFS--SAVDLIYNPV--ETLFLKYARESGVK-AVNGLYMLVSQAAASEEIWNDI 254 (282)
T ss_dssp ECSSTTSTTSTTCCS-SCHH-HH--TTCS--EEEESCCSSS--SCHHHHHHHHTTCE-EECSHHHHHHHHHHHHHHHHTC
T ss_pred ECCccCccCCCccCC-CCHH-Hc--CCCC--EEEEEeeCCC--CCHHHHHHHHCcCe-EeCcHHHHHHHHHHHHHHHcCC
Confidence 999 555542 2 2110 00 0000 0222222222 1111 11321 2345688899999999999996
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 013303 344 IVLPSQDEMMEDVKAFYSKLEA 365 (446)
Q Consensus 344 ~~lp~~~~m~~~~~~~~~~~~~ 365 (446)
. |+.+.|.+.+.+.....++
T Consensus 255 ~--~~~~~~~~~~~~~~~~~~~ 274 (282)
T 3fbt_A 255 S--IDEIIVDEIFEVLEEKIKS 274 (282)
T ss_dssp C--CCHHHHHHHHHHHHHHHHC
T ss_pred C--CCHHHHHHHHHHHHHhhhc
Confidence 3 6678888777665555543
No 334
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=96.05 E-value=0.02 Score=57.37 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=29.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~ 35 (446)
.|+|+|||+|.+|.-++..|++. +.+|+++-|+.
T Consensus 246 gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~ 281 (501)
T 4b63_A 246 PYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDS 281 (501)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSS
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 47899999999999999999875 67899998865
No 335
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=96.04 E-value=0.0032 Score=63.05 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=55.4
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc--cc---------------------cccCCCCCCe--eeccceeE
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD--ET---------------------HEKQPGYDNM--WLHSMVER 252 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~--~~---------------------~~~~~~~~~v--~~~~~v~~ 252 (446)
.+|+|||+|++|+-.|..|++. .+|+++.+.+.. .. ...+ ..++ .....+..
T Consensus 109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l--~~~v~~~~~~~v~~ 185 (493)
T 1y56_A 109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL--NENTKIYLETSALG 185 (493)
T ss_dssp ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC--CTTEEEETTEEECC
T ss_pred CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH--hcCCEEEcCCEEEE
Confidence 4799999999999999999999 999999986531 00 0111 1122 23334444
Q ss_pred EccCCc-EEe---cCCc--EEeecEEEEecCccCCCCCC
Q 013303 253 ANEDGT-VVF---RNGR--VVSADVIMHCTGYKYNYPFL 285 (446)
Q Consensus 253 i~~~~~-v~~---~dG~--~~~~D~vi~atG~~~~~~~l 285 (446)
+..++. +.. .+++ ++.+|.+|+|||..+..+-+
T Consensus 186 i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~ 224 (493)
T 1y56_A 186 VFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLF 224 (493)
T ss_dssp CEECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCC
T ss_pred EEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCC
Confidence 433322 222 4554 57899999999998775533
No 336
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=96.03 E-value=0.0054 Score=61.65 Aligned_cols=33 Identities=21% Similarity=0.179 Sum_probs=31.0
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~ 40 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA 40 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence 479999999999999999999999999999875
No 337
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=96.03 E-value=0.0072 Score=48.75 Aligned_cols=33 Identities=21% Similarity=0.485 Sum_probs=30.8
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++|+|||+|..|...|..|.+.|++|+++|+++
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~ 37 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 37 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 589999999999999999999999999999854
No 338
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=95.96 E-value=0.0095 Score=49.17 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=31.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 34 (446)
.++|+|+|+|..|...|..|.+.|++|+++|+.
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 468999999999999999999999999999985
No 339
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=95.92 E-value=0.0074 Score=48.87 Aligned_cols=34 Identities=38% Similarity=0.502 Sum_probs=31.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|+|+|+|..|..+|..|.+.|.+|+++|+.+
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~ 39 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 39 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4579999999999999999999999999999853
No 340
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=95.88 E-value=0.0079 Score=58.51 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=30.8
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCE-EEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKE-VHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~-V~l~~r~~ 230 (446)
.+|+|||+|++|+-+|..|++.|.+ |+++.+.+
T Consensus 5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 38 (410)
T 3c96_A 5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSS 38 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 4799999999999999999999999 99999865
No 341
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=95.86 E-value=0.0079 Score=60.25 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=31.8
Q ss_pred CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
..+|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus 12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~ 46 (499)
T 2qa2_A 12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQ 46 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 35899999999999999999999999999998653
No 342
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=95.85 E-value=0.005 Score=60.85 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=30.2
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 8 dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~ 39 (453)
T 3atr_A 8 DVLIIGGGFAGSSAAYQLSRRGLKILLVDSKP 39 (453)
T ss_dssp SEEEECCSHHHHHHHHHHSSSSCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 69999999999999999999999999999865
No 343
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=95.78 E-value=0.0071 Score=60.59 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=31.3
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
..|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus 12 ~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~ 45 (500)
T 2qa1_A 12 AAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVE 45 (500)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 5799999999999999999999999999998653
No 344
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=95.77 E-value=0.0053 Score=62.55 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=30.7
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
..|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~ 83 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVE 83 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 4699999999999999999999999999998653
No 345
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=95.62 E-value=0.011 Score=55.59 Aligned_cols=35 Identities=37% Similarity=0.571 Sum_probs=31.4
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
|+++|+|||+|.-|.+.|..|++.|.+|+++++++
T Consensus 1 M~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (320)
T 3i83_A 1 MSLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD 35 (320)
T ss_dssp --CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence 67899999999999999999999999999999864
No 346
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=95.39 E-value=0.012 Score=55.04 Aligned_cols=35 Identities=37% Similarity=0.545 Sum_probs=30.4
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
|+++|+|||+|.-|.+.|..|++.|.+|+++++++
T Consensus 1 M~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (312)
T 3hn2_A 1 MSLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD 35 (312)
T ss_dssp ---CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence 66899999999999999999999999999999864
No 347
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=95.39 E-value=0.013 Score=48.58 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=33.8
Q ss_pred EEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 184 MHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 184 ~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
+|.+....++...+++|+|+|+|..|..+|..|...|.+|+++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~ 53 (155)
T 2g1u_A 6 IHHHHHHMSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY 53 (155)
T ss_dssp -----------CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred hhhhhhhhhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 344444455666789999999999999999999999999999988754
No 348
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.34 E-value=0.016 Score=49.40 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=30.8
Q ss_pred CeEEEECcChHHHHHHHHHHHC-CCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~ 35 (446)
.+|+|||+|..|..+|+.|.+. |++|+++|+++
T Consensus 40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~ 73 (183)
T 3c85_A 40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIRE 73 (183)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence 4799999999999999999999 99999999864
No 349
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=95.32 E-value=0.015 Score=57.28 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=32.1
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
|+++|+|||+|.-|+..|..|++.|++|+++|+++
T Consensus 1 M~mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~ 35 (450)
T 3gg2_A 1 MSLDIAVVGIGYVGLVSATCFAELGANVRCIDTDR 35 (450)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence 56799999999999999999999999999999864
No 350
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=95.28 E-value=0.015 Score=51.20 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=31.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 34 (446)
.++|+|||||..|...|+.|.+.|.+|+|+++.
T Consensus 31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~ 63 (223)
T 3dfz_A 31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT 63 (223)
T ss_dssp TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence 478999999999999999999999999999874
No 351
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=95.27 E-value=0.011 Score=58.00 Aligned_cols=34 Identities=29% Similarity=0.350 Sum_probs=31.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|||.|.+|+++|+.|+++|++|+++|...
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~ 38 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM 38 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSS
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCC
Confidence 4789999999999999999999999999999865
No 352
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=95.26 E-value=0.015 Score=57.38 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=31.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|||.|.+|+++|+.|++.|++|+++|...
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~ 42 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP 42 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 4789999999999999999999999999999864
No 353
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=95.26 E-value=0.0078 Score=54.09 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=30.1
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.|+|||+|++|+-+|..|++.|.+|+++.+++
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~ 35 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR 35 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 59999999999999999999999999999765
No 354
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=95.13 E-value=0.015 Score=53.78 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=31.1
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
|+++|+|||+|.-|.+.|..|++.|.+|++++++.
T Consensus 1 M~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~ 35 (294)
T 3g17_A 1 MSLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA 35 (294)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence 67899999999999999999999999999999863
No 355
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=95.03 E-value=0.02 Score=50.34 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=30.7
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++|+|||+|..|...|+.|.+.|++|+++|+++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~ 33 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDR 33 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 379999999999999999999999999999864
No 356
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=94.98 E-value=0.018 Score=52.46 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=31.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 34 (446)
.++|+|||||..|...++.|.+.|.+|+|+++.
T Consensus 13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~ 45 (274)
T 1kyq_A 13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (274)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 478999999999999999999999999999974
No 357
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=94.93 E-value=0.024 Score=54.44 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=31.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
..+|+|||+|+.|+.+|+.|...|.+|+++|+..
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 223 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP 223 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3589999999999999999999999999999875
No 358
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=94.86 E-value=0.027 Score=51.79 Aligned_cols=34 Identities=24% Similarity=0.463 Sum_probs=31.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|||+|.-|...|..|++.|++|+++|+++
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT 37 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3689999999999999999999999999999864
No 359
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=94.85 E-value=0.024 Score=52.67 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=30.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|+|||+|.-|...|..|++.|++|+++++++
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~ 36 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP 36 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 5689999999999999999999999999999853
No 360
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=94.82 E-value=0.028 Score=52.13 Aligned_cols=34 Identities=38% Similarity=0.620 Sum_probs=31.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|+|||+|.-|...|..|++.|++|+++|+++
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 48 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 48 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 4689999999999999999999999999999864
No 361
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=94.75 E-value=0.031 Score=53.30 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=32.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 36 (446)
||+|+|||||..|..+++.+.+.|++++++|..+.
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~ 35 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ 35 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 68999999999999999999999999999997653
No 362
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=94.71 E-value=0.031 Score=52.08 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=31.0
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.+|+|||||.-|...|..++..|++|+++|..+
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~ 39 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP 39 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence 589999999999999999999999999999864
No 363
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=94.66 E-value=0.035 Score=48.49 Aligned_cols=35 Identities=29% Similarity=0.551 Sum_probs=31.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 36 (446)
.++|+|||+|.-|.+.|..|++.|++|+++++++.
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~ 53 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ 53 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 46899999999999999999999999999998653
No 364
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=94.66 E-value=0.035 Score=52.20 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=31.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 35 (446)
+++|+|||||..|.+.|..|+..|+ +|+++|..+
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~ 48 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE 48 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 4689999999999999999999998 999999864
No 365
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=94.63 E-value=0.026 Score=53.82 Aligned_cols=34 Identities=26% Similarity=0.283 Sum_probs=31.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
..+|+|||+|..|+.+|+.|...|.+|+++|++.
T Consensus 184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 217 (381)
T 3p2y_A 184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRP 217 (381)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999864
No 366
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*
Probab=94.60 E-value=0.035 Score=51.73 Aligned_cols=35 Identities=29% Similarity=0.436 Sum_probs=31.0
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 35 (446)
|+++|+|||||..|...|..|+..|+ +|+++|..+
T Consensus 1 M~~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~ 36 (309)
T 1ur5_A 1 MRKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE 36 (309)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 56799999999999999999999996 899999754
No 367
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=94.56 E-value=0.032 Score=51.95 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=30.9
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
|+++|+|||+|.-|.+.|..|+ .|.+|+++++++
T Consensus 1 M~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~ 34 (307)
T 3ego_A 1 MSLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ 34 (307)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence 6789999999999999999999 999999999864
No 368
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=94.54 E-value=0.027 Score=51.53 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=32.0
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
|+++|+|+|||..|...+..|++.|++|+++.|..
T Consensus 4 m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (286)
T 3ius_A 4 MTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP 38 (286)
T ss_dssp -CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred CcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence 57899999999999999999999999999999864
No 369
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=94.43 E-value=0.015 Score=57.39 Aligned_cols=77 Identities=22% Similarity=0.324 Sum_probs=52.8
Q ss_pred CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC--ccccccCCCCCCeeeccceeEEccCCcEEecCC---c-E
Q 013303 193 NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--DETHEKQPGYDNMWLHSMVERANEDGTVVFRNG---R-V 266 (446)
Q Consensus 193 ~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~--~~~~~~~~~~~~v~~~~~v~~i~~~~~v~~~dG---~-~ 266 (446)
.++++|+|+|||.|.+|+-+|..|.+.|.+|+.+.++.. ......+. ..+ +.+..| . .
T Consensus 5 ~~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~---------------~~g-i~~~~g~~~~~~ 68 (451)
T 3lk7_A 5 TTFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLL---------------EEG-IKVVCGSHPLEL 68 (451)
T ss_dssp CTTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHH---------------HTT-CEEEESCCCGGG
T ss_pred hhcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHH---------------hCC-CEEEECCChHHh
Confidence 346789999999999999999999999999999987542 11111111 111 111111 1 1
Q ss_pred -Ee-ecEEEEecCccCCCCCC
Q 013303 267 -VS-ADVIMHCTGYKYNYPFL 285 (446)
Q Consensus 267 -~~-~D~vi~atG~~~~~~~l 285 (446)
-. +|.||.++|..++.|.+
T Consensus 69 ~~~~~d~vv~spgi~~~~p~~ 89 (451)
T 3lk7_A 69 LDEDFCYMIKNPGIPYNNPMV 89 (451)
T ss_dssp GGSCEEEEEECTTSCTTSHHH
T ss_pred hcCCCCEEEECCcCCCCChhH
Confidence 13 89999999999887764
No 370
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=94.40 E-value=0.038 Score=50.27 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=33.7
Q ss_pred CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
+++|++|+|||+|.+|.--+..|.+.|.+|+++....
T Consensus 10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred EcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 3478999999999999999999999999999998754
No 371
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=94.38 E-value=0.041 Score=51.47 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=31.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|||+|.-|...|..|++.|++|+++|+++
T Consensus 6 ~~kI~vIGaG~MG~~iA~~la~~G~~V~l~d~~~ 39 (319)
T 2dpo_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP 39 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CceEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3689999999999999999999999999999864
No 372
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=94.37 E-value=0.014 Score=58.33 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=30.4
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
|+|+|||+|.+|+-.|..|++.|.+|+++.+++
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~ 34 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRD 34 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCC
Confidence 689999999999999999999999999998764
No 373
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=94.32 E-value=0.035 Score=54.15 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=31.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+.+|+|||.|..||.+|..|++.|++|+.||..+
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~ 54 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP 54 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 5789999999999999999999999999999764
No 374
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=94.27 E-value=0.042 Score=51.38 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=31.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~ 35 (446)
+++|+|||+|..|...|..|++.|+ +|+++|+..
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~ 42 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 42 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 4689999999999999999999998 999999853
No 375
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=94.23 E-value=0.035 Score=52.78 Aligned_cols=32 Identities=38% Similarity=0.541 Sum_probs=30.2
Q ss_pred CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~ 34 (446)
.+|+|+|||.+|+.+|+.|...|. +|+++|+.
T Consensus 189 ~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~ 221 (398)
T 2a9f_A 189 VSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF 221 (398)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence 589999999999999999999998 99999985
No 376
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=94.23 E-value=0.042 Score=54.29 Aligned_cols=35 Identities=14% Similarity=0.381 Sum_probs=32.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHC-CC-cEEEEeeCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE-GH-TVVVYEKGEQ 36 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~-g~-~v~v~e~~~~ 36 (446)
.++|+|||+|.-|+..|..|++. |+ +|+++|+++.
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 46899999999999999999999 99 9999999765
No 377
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=94.22 E-value=0.041 Score=54.55 Aligned_cols=34 Identities=32% Similarity=0.561 Sum_probs=31.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|||+|.-|+..|..|++.|++|+++|+++
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~ 41 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ 41 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4789999999999999999999999999999864
No 378
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=94.22 E-value=0.023 Score=55.59 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=31.4
Q ss_pred CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.++|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 3689999999999999999999999999999876
No 379
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=94.20 E-value=0.047 Score=50.04 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=30.6
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++|+|||+|.-|...|..|++.|++|+++++++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~ 33 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVP 33 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence 379999999999999999999999999999865
No 380
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=94.19 E-value=0.043 Score=51.62 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=30.6
Q ss_pred CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 35 (446)
++|+|||||..|.+.|..|++.|+ +|+++|..+
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~ 43 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK 43 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence 589999999999999999999998 999999864
No 381
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=94.16 E-value=0.038 Score=51.67 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=32.2
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCC-CcEEEEeeCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGE 35 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~ 35 (446)
|+++|.|||+|.-|...|..|++.| ++|++++++.
T Consensus 23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~ 58 (317)
T 4ezb_A 23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF 58 (317)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 4578999999999999999999999 9999999864
No 382
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=94.14 E-value=0.046 Score=51.53 Aligned_cols=35 Identities=29% Similarity=0.482 Sum_probs=31.7
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
|..+|+|||+|.-|.+.|..|++.|++|+++++++
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~ 47 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK 47 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 46799999999999999999999999999999853
No 383
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=94.13 E-value=0.043 Score=53.10 Aligned_cols=34 Identities=32% Similarity=0.346 Sum_probs=31.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
..+|+|||+|.+|+.+++.|...|.+|+++|++.
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~ 205 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP 205 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4689999999999999999999999999999864
No 384
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=94.12 E-value=0.046 Score=50.92 Aligned_cols=34 Identities=26% Similarity=0.516 Sum_probs=31.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|.|||.|.-|...|..|++.|++|+++++++
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 54 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL 54 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4789999999999999999999999999999864
No 385
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=94.12 E-value=0.019 Score=46.73 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=30.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|||+|..|...+..|.+.|.+|++++++.
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~ 54 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI 54 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 4689999999999999999999999999999864
No 386
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=94.11 E-value=0.048 Score=50.56 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=31.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|.|||+|.-|...|..|++.|++|+++++++
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 40 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP 40 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4689999999999999999999999999999864
No 387
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=94.10 E-value=0.035 Score=51.38 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=31.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|.|||.|.-|...|..|++.|++|+++|+++
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 48 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRI 48 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSST
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3589999999999999999999999999999865
No 388
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=94.08 E-value=0.055 Score=48.48 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=31.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|.|||+|.-|.+.|..|++.|++|+++++++
T Consensus 19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~ 52 (245)
T 3dtt_A 19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP 52 (245)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 5789999999999999999999999999999864
No 389
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=94.04 E-value=0.05 Score=51.05 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=30.9
Q ss_pred CCeEEEECcChHHHH-HHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLV-VGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~-aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|.|||.|.+|++ +|+.|++.|++|++.|+..
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~ 38 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM 38 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 578999999999996 7888999999999999864
No 390
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=94.01 E-value=0.049 Score=50.91 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=31.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 35 (446)
+++|+|||+|..|.+.|..|++.|+ +|+++|+.+
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~ 38 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE 38 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence 3689999999999999999999998 999999864
No 391
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=93.99 E-value=0.048 Score=51.81 Aligned_cols=33 Identities=36% Similarity=0.375 Sum_probs=30.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~ 34 (446)
..+|+|+|||.+|..+|+.|...|. +|+++|+.
T Consensus 192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~ 225 (388)
T 1vl6_A 192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 225 (388)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 4689999999999999999999998 79999986
No 392
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=93.98 E-value=0.053 Score=51.10 Aligned_cols=33 Identities=30% Similarity=0.619 Sum_probs=30.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 34 (446)
+++|+|||+|.-|.+.|..|++.|++|+++++.
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~ 35 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG 35 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence 468999999999999999999999999999984
No 393
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=93.90 E-value=0.041 Score=50.95 Aligned_cols=35 Identities=29% Similarity=0.516 Sum_probs=29.7
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
|.++|.+||-|.-|...|+.|++.|++|+++|++.
T Consensus 4 Ms~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~ 38 (297)
T 4gbj_A 4 MSEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTA 38 (297)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHTTCEEEEC----
T ss_pred CCCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 56789999999999999999999999999999865
No 394
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=93.90 E-value=0.058 Score=51.92 Aligned_cols=34 Identities=29% Similarity=0.296 Sum_probs=31.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
..+|+|||+|.+|+.++..+...|.+|+++|+.+
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~ 205 (384)
T 1l7d_A 172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA 205 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999864
No 395
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=93.82 E-value=0.056 Score=51.40 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=31.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|+|||+|.-|.+.|..|++.|++|+++++++
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~ 62 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES 62 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3589999999999999999999999999999864
No 396
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=93.78 E-value=0.065 Score=48.02 Aligned_cols=35 Identities=14% Similarity=0.373 Sum_probs=32.3
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCC----cEEEEeeCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGH----TVVVYEKGE 35 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~----~v~v~e~~~ 35 (446)
|+++|.|||+|.-|.+.|..|.+.|+ +|+++++++
T Consensus 1 M~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~ 39 (247)
T 3gt0_A 1 MDKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT 39 (247)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence 56899999999999999999999998 999999864
No 397
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=93.77 E-value=0.065 Score=51.05 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=31.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|+|+|.+|+.++..|+..|.+|+++++++
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~ 200 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 200 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3689999999999999999999999999999864
No 398
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=93.76 E-value=0.043 Score=50.44 Aligned_cols=34 Identities=24% Similarity=0.471 Sum_probs=31.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
|++|.|||.|.-|...|..|++.|++|+++++++
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~ 34 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNP 34 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 4689999999999999999999999999999864
No 399
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=93.74 E-value=0.053 Score=50.19 Aligned_cols=34 Identities=26% Similarity=0.518 Sum_probs=31.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|.|||+|.-|...|..|++.|++|+++++++
T Consensus 3 m~~I~iiG~G~mG~~~a~~l~~~G~~V~~~d~~~ 36 (302)
T 2h78_A 3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ 36 (302)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 5799999999999999999999999999999864
No 400
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=93.65 E-value=0.036 Score=48.81 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=30.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEE-EeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVV-YEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v-~e~~~ 35 (446)
+++|+|||+|.-|.+.|..|++.|++|++ +++++
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~ 57 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP 57 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence 46899999999999999999999999998 77754
No 401
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}
Probab=93.63 E-value=0.048 Score=52.26 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=32.3
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCC-------CcEEEEeeCCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREG-------HTVVVYEKGEQ 36 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g-------~~v~v~e~~~~ 36 (446)
|+++|+|||+|.-|.+.|..|++.| ++|+++++++.
T Consensus 20 ~~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~ 62 (375)
T 1yj8_A 20 GPLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF 62 (375)
T ss_dssp SCBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence 3568999999999999999999999 99999998654
No 402
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=93.59 E-value=0.064 Score=49.25 Aligned_cols=34 Identities=21% Similarity=0.512 Sum_probs=31.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|.|||+|.-|...|..|++.|++|+++++++
T Consensus 1 s~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 34 (287)
T 3pef_A 1 SQKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSP 34 (287)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 3689999999999999999999999999999864
No 403
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=93.55 E-value=0.076 Score=46.49 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=30.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|+|||+|..|...|..|++.|++|++++++.
T Consensus 28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~ 61 (215)
T 2vns_A 28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNP 61 (215)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3579999999999999999999999999999864
No 404
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6
Probab=93.52 E-value=0.059 Score=49.73 Aligned_cols=35 Identities=31% Similarity=0.518 Sum_probs=30.6
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
|+++|+|||+|..|...|..|.+.|++|++++++.
T Consensus 4 M~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~ 38 (299)
T 1vpd_A 4 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP 38 (299)
T ss_dssp --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred ccceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 34689999999999999999999999999999853
No 405
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=93.52 E-value=0.069 Score=50.65 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=30.7
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++|+|||+|..|...|..|++.|++|+++++++
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 37 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 37 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 589999999999999999999999999999853
No 406
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=93.51 E-value=0.063 Score=48.23 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=30.0
Q ss_pred CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~ 34 (446)
++|+|||+|-.|..+|..|++.|. +++++|+.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d 64 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD 64 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 689999999999999999999997 89999985
No 407
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=93.51 E-value=0.1 Score=51.90 Aligned_cols=57 Identities=16% Similarity=0.004 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCC
Q 013303 103 EEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (446)
Q Consensus 103 ~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s 166 (446)
..+.+.|.+.+...+ +. |+++++|++|+..+ +.++|++.++. ++.||+||+|+|...
T Consensus 255 ~~l~~~l~~~l~~~g~~~--i~~~~~V~~i~~~~-~~v~v~~~~g~----~~~ad~vI~a~~~~~ 312 (495)
T 2vvm_A 255 SAFARRFWEEAAGTGRLG--YVFGCPVRSVVNER-DAARVTARDGR----EFVAKRVVCTIPLNV 312 (495)
T ss_dssp HHHHHHHHHHHHTTTCEE--EESSCCEEEEEECS-SSEEEEETTCC----EEEEEEEEECCCGGG
T ss_pred HHHHHHHHHHhhhcCceE--EEeCCEEEEEEEcC-CEEEEEECCCC----EEEcCEEEECCCHHH
Confidence 455555555555555 54 89999999999876 66887765543 689999999999643
No 408
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=93.49 E-value=0.076 Score=48.72 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=31.2
Q ss_pred CCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|+|||+ |.-|...|..|++.|++|++++++.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~ 45 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP 45 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 468999999 9999999999999999999999853
No 409
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}
Probab=93.42 E-value=0.07 Score=49.13 Aligned_cols=33 Identities=33% Similarity=0.425 Sum_probs=30.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|.|||+|.-|...|..|+ .|++|+++|+++
T Consensus 12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~ 44 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE 44 (293)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence 478999999999999999999 999999999864
No 410
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=93.39 E-value=0.078 Score=52.00 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=32.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 36 (446)
.++|+|||+|.-|...|..|++.|++|+++|+++.
T Consensus 54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e 88 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ 88 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence 36899999999999999999999999999998753
No 411
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=93.35 E-value=0.071 Score=49.84 Aligned_cols=34 Identities=24% Similarity=0.524 Sum_probs=31.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|.|||+|.-|...|..|++.|++|+++++++
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 64 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP 64 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 3589999999999999999999999999999864
No 412
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=93.35 E-value=0.069 Score=51.94 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=30.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|+|||+|.-|+..|..|++ |++|+++|+.+
T Consensus 36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~ 68 (432)
T 3pid_A 36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ 68 (432)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence 3589999999999999999998 99999999864
No 413
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=93.33 E-value=0.077 Score=49.07 Aligned_cols=34 Identities=15% Similarity=0.412 Sum_probs=31.1
Q ss_pred CCeEEEEC-cChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIG-AGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIG-aG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|+||| +|.-|.+.|..|++.|++|+++++++
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~ 55 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 55 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence 46899999 99999999999999999999998754
No 414
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=93.31 E-value=0.099 Score=47.73 Aligned_cols=34 Identities=24% Similarity=0.498 Sum_probs=31.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|+|.|+|..|...+..|++.|++|+++.+..
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 36 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSA 36 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999864
No 415
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=93.31 E-value=0.039 Score=52.79 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=30.1
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~ 37 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRP 37 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 59999999999999999999999999999865
No 416
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=93.30 E-value=0.076 Score=52.01 Aligned_cols=35 Identities=37% Similarity=0.543 Sum_probs=32.2
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV 37 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~ 37 (446)
-+++|||.|.-|+..|..|++.|++|+++|+++..
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~k 43 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARK 43 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 58999999999999999999999999999997643
No 417
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=93.26 E-value=0.097 Score=47.45 Aligned_cols=34 Identities=24% Similarity=0.529 Sum_probs=31.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|||+|-+|.+++..|++.|.+|+|+.|+.
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~ 151 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS 151 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3689999999999999999999999999999864
No 418
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=93.24 E-value=0.089 Score=49.22 Aligned_cols=34 Identities=18% Similarity=0.395 Sum_probs=30.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 35 (446)
+++|+|||||..|..+|..|+..|+ +|+++|..+
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~ 38 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK 38 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 4689999999999999999999998 999999754
No 419
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=93.22 E-value=0.083 Score=49.36 Aligned_cols=32 Identities=41% Similarity=0.579 Sum_probs=29.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 34 (446)
+++|+|||+|.-|.+.|..|++.|++|+++ ++
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~ 50 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR 50 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence 578999999999999999999999999999 64
No 420
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=93.21 E-value=0.081 Score=49.07 Aligned_cols=33 Identities=27% Similarity=0.518 Sum_probs=30.3
Q ss_pred CeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~ 35 (446)
++|+|||||..|.+.|..|+..|+ +|+++|..+
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~ 35 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE 35 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 479999999999999999999998 999999854
No 421
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=93.13 E-value=0.096 Score=50.06 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=31.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|+|+|..|+.+|+.|+..|.+|+++|+++
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~ 199 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH 199 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4689999999999999999999999999999864
No 422
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=93.11 E-value=0.091 Score=48.78 Aligned_cols=34 Identities=32% Similarity=0.611 Sum_probs=31.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|.|||.|.-|...|..|++.|++|+++++++
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 42 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP 42 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999864
No 423
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=93.06 E-value=0.08 Score=52.25 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=31.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|||+|.-|...|..|++.|++|+++|+++
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~ 70 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDP 70 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3579999999999999999999999999999864
No 424
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=93.03 E-value=0.11 Score=45.32 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=31.0
Q ss_pred CCCeEEEECc-ChHHHHHHHHHH-HCCCcEEEEeeCC
Q 013303 1 MFRHVAVIGA-GAAGLVVGHELL-REGHTVVVYEKGE 35 (446)
Q Consensus 1 ~~~~V~IIGa-G~aGl~aA~~l~-~~g~~v~v~e~~~ 35 (446)
|++.|+|+|| |..|..+++.|+ +.|++|+++.++.
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~ 40 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQL 40 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCc
Confidence 4566999996 999999999999 8999999999864
No 425
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Probab=93.02 E-value=0.074 Score=52.11 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=30.6
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++|+|||+|..|+..|..|++.|++|+++|+++
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~ 33 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 379999999999999999999999999999864
No 426
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=93.01 E-value=0.1 Score=50.03 Aligned_cols=34 Identities=35% Similarity=0.341 Sum_probs=31.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|||+|..|+.+|+.++..|.+|+++|+..
T Consensus 168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~ 201 (377)
T 2vhw_A 168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI 201 (377)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 4689999999999999999999999999999864
No 427
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}
Probab=93.01 E-value=0.069 Score=53.02 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=30.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~ 35 (446)
+++|+|||+|.-|+..|..|++. |++|+++|+++
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~ 44 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT 44 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 46899999999999999999998 78999999864
No 428
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=93.01 E-value=0.1 Score=48.66 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=31.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~ 35 (446)
.++|+|||+|.-|.+.|..|++.|+ +|+++|+++
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~ 68 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 68 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence 3689999999999999999999999 999999864
No 429
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=92.99 E-value=0.1 Score=47.50 Aligned_cols=34 Identities=26% Similarity=0.203 Sum_probs=31.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|+|+|-.|.++|..|++.|.+|++++|+.
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~ 152 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV 152 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence 4689999999999999999999999999998863
No 430
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Probab=92.80 E-value=0.054 Score=52.48 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=28.9
Q ss_pred CCCeEEEECcChHHHHHHHHHHH-CCCcEEEEe
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLR-EGHTVVVYE 32 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~-~g~~v~v~e 32 (446)
|+++|+|||+|.-|.+.|..|++ .|++|++++
T Consensus 1 ~~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~ 33 (404)
T 3c7a_A 1 MTVKVCVCGGGNGAHTLSGLAASRDGVEVRVLT 33 (404)
T ss_dssp -CEEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred CCceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence 45789999999999999999988 499999998
No 431
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}
Probab=92.78 E-value=0.1 Score=51.88 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=32.6
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
|.++|.|||+|.-|...|..|++.|++|+++++++
T Consensus 9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~ 43 (497)
T 2p4q_A 9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ 43 (497)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 56789999999999999999999999999999865
No 432
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=92.77 E-value=0.051 Score=52.02 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=30.7
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
++|+|||+|..|++.|..+++.|.+|.++.+++
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~ 34 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP 34 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence 469999999999999999999999999998765
No 433
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=92.72 E-value=0.056 Score=53.04 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=51.5
Q ss_pred CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCccccccCCCCCCeeeccceeEEccCCcEEecC--CcEE-eecE
Q 013303 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRN--GRVV-SADV 271 (446)
Q Consensus 195 ~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~~~~~~~~~~v~~~~~v~~i~~~~~v~~~d--G~~~-~~D~ 271 (446)
+++|+|+|||.|.+|+..|..|++.|.+|+.+..+........+. .+ + .+.+.. ...+ .+|.
T Consensus 3 ~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G-~-------------~~~~g~~~~~~~~~~d~ 67 (439)
T 2x5o_A 3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EA-V-------------ERHTGSLNDEWLMAADL 67 (439)
T ss_dssp CTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TT-S-------------CEEESSCCHHHHHTCSE
T ss_pred CCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CC-C-------------EEEECCCcHHHhccCCE
Confidence 578999999999999999999999999999988765321111111 11 0 011110 0112 3799
Q ss_pred EEEecCccCCCCCCC
Q 013303 272 IMHCTGYKYNYPFLE 286 (446)
Q Consensus 272 vi~atG~~~~~~~l~ 286 (446)
||.++|..++.|.+.
T Consensus 68 vV~s~gi~~~~p~~~ 82 (439)
T 2x5o_A 68 IVASPGIALAHPSLS 82 (439)
T ss_dssp EEECTTSCTTCHHHH
T ss_pred EEeCCCCCCCCHHHH
Confidence 999999988777653
No 434
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=92.72 E-value=0.063 Score=52.17 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=31.1
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
++|+|||+|.+|+-+|..|++.|.+|+++.+++.
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~ 34 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAM 34 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4799999999999999999999999999998653
No 435
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=92.70 E-value=0.13 Score=48.15 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=31.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 35 (446)
+++|+|||||..|.+.|..|+..|+ +++++|..+
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~ 41 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE 41 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 4689999999999999999999998 999999864
No 436
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=92.66 E-value=0.12 Score=47.23 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=30.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~ 35 (446)
+++|+|||+|.-|.+.|..|++.|+ +|+++++++
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~ 36 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 3689999999999999999999998 899998854
No 437
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=92.66 E-value=0.097 Score=51.57 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=31.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 34 (446)
.++|+|||||..|...++.|.+.|.+|+|+++.
T Consensus 12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~ 44 (457)
T 1pjq_A 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT 44 (457)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence 478999999999999999999999999999975
No 438
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=92.61 E-value=0.11 Score=48.01 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=30.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 35 (446)
.++|+|||+|.+|.++|..|++.|. +|+|++|+.
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~ 175 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV 175 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 4689999999999999999999998 899999863
No 439
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Probab=92.59 E-value=0.099 Score=48.60 Aligned_cols=33 Identities=33% Similarity=0.660 Sum_probs=30.2
Q ss_pred CeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~ 35 (446)
++|+|||+|..|.+.|..|++.| .+|+++|+..
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~ 36 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE 36 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence 68999999999999999999999 6899999853
No 440
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=92.58 E-value=0.14 Score=43.93 Aligned_cols=33 Identities=27% Similarity=0.509 Sum_probs=30.8
Q ss_pred CeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++|+|+|| |..|..+++.|++.|++|+++.++.
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~ 37 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS 37 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence 68999999 9999999999999999999999864
No 441
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=92.56 E-value=0.064 Score=51.43 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=31.1
Q ss_pred CEEEEEecCCcHHHHHHHHhcc--CCEEEEEEecCC
Q 013303 198 QVVILIGHYASGLDIKRDLAGF--AKEVHIASRSVA 231 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~--~~~V~l~~r~~~ 231 (446)
++|+|||+|++|+-+|..|++. |.+|+++.+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~ 36 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDE 36 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 3799999999999999999998 999999998754
No 442
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=92.56 E-value=0.11 Score=48.37 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=30.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~ 35 (446)
+++|+|||+|..|.++|..|+..++ +++++|...
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~ 42 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 42 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 3589999999999999999999987 899999753
No 443
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=92.55 E-value=0.053 Score=51.77 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=30.8
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.+|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~ 50 (382)
T 1ryi_A 18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGT 50 (382)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 589999999999999999999999999999864
No 444
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=92.54 E-value=0.14 Score=47.40 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=31.8
Q ss_pred CCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|+|.|| |..|...+..|++.|++|+++.+..
T Consensus 7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 41 (321)
T 3vps_A 7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLR 41 (321)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCS
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCC
Confidence 578999999 9999999999999999999999865
No 445
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=92.54 E-value=0.12 Score=50.12 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=31.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 36 (446)
..+|+|||+|..|..+|+.|.+.|++|+++|+++.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~ 38 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD 38 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence 35799999999999999999999999999998743
No 446
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=92.53 E-value=0.12 Score=45.55 Aligned_cols=34 Identities=32% Similarity=0.373 Sum_probs=31.5
Q ss_pred CCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|.|| |..|..+++.|++.|++|+++.|+.
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~ 55 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE 55 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence 578999999 9999999999999999999999864
No 447
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=92.48 E-value=0.07 Score=51.77 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=31.1
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
++|+|||+|.+|+-+|..|++.|.+|+++.+++.
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~ 34 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPI 34 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 3799999999999999999999999999988653
No 448
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*
Probab=92.47 E-value=0.061 Score=51.29 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=30.1
Q ss_pred eEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+|+|||+|.-|.+.|..|++.|++|+++++++
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~ 48 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 48 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 89999999999999999999999999999864
No 449
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Probab=92.46 E-value=0.13 Score=47.92 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=29.6
Q ss_pred CeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~ 35 (446)
++|+|||+|..|.+.|..|++. |.+|+++|+.+
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~ 35 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 3799999999999999999985 78999999864
No 450
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=92.41 E-value=0.054 Score=53.45 Aligned_cols=34 Identities=21% Similarity=0.456 Sum_probs=31.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|+|+|-.|...|+.|.+.|++|+++|+.+
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~ 36 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG 36 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 4689999999999999999999999999999864
No 451
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Probab=92.37 E-value=0.096 Score=47.95 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=29.5
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++|+|||+|.-|...|..|++ |++|++++++.
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~ 33 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF 33 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 579999999999999999999 99999999854
No 452
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=92.37 E-value=0.14 Score=47.43 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=31.4
Q ss_pred CCCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeC
Q 013303 1 MFRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG 34 (446)
Q Consensus 1 ~~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~ 34 (446)
|+++|+|.|| |..|...+..|++.|++|+++.+.
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~ 35 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRS 35 (311)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCC
Confidence 6789999996 999999999999999999999986
No 453
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=92.36 E-value=0.13 Score=47.90 Aligned_cols=32 Identities=31% Similarity=0.432 Sum_probs=30.3
Q ss_pred CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~ 34 (446)
++|+|||+|..|.+.|..|+..|+ +|+++|..
T Consensus 9 ~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~ 41 (315)
T 3tl2_A 9 KKVSVIGAGFTGATTAFLLAQKELADVVLVDIP 41 (315)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 589999999999999999999999 99999985
No 454
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=92.34 E-value=0.13 Score=48.82 Aligned_cols=34 Identities=29% Similarity=0.474 Sum_probs=31.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|.|||.|.-|...|..|++.|++|+++++++
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~ 55 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV 55 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3689999999999999999999999999999864
No 455
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=92.34 E-value=0.11 Score=48.46 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=30.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~ 34 (446)
+++|.|||.|.-|...|..|++.|+ +|++++++
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~ 57 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA 57 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 4689999999999999999999999 99999985
No 456
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=92.28 E-value=0.074 Score=51.17 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=30.4
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
..|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~ 37 (397)
T 2oln_A 5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHT 37 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 379999999999999999999999999999754
No 457
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}
Probab=92.27 E-value=0.13 Score=50.84 Aligned_cols=33 Identities=33% Similarity=0.596 Sum_probs=31.1
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++|+|||+|.-|...|..|++.|++|+++|+++
T Consensus 6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~ 38 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA 38 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 589999999999999999999999999999864
No 458
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=92.24 E-value=0.089 Score=48.89 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=29.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHC-----C-CcEEEEee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE-----G-HTVVVYEK 33 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~-----g-~~v~v~e~ 33 (446)
+++|+|||+|.-|...|..|++. | ++|+++++
T Consensus 8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence 35899999999999999999998 9 99999987
No 459
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*
Probab=92.22 E-value=0.11 Score=47.33 Aligned_cols=34 Identities=29% Similarity=0.354 Sum_probs=31.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|||+|-+|.++|..|++.|.+|++++|+.
T Consensus 119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~ 152 (272)
T 1p77_A 119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF 152 (272)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4689999999999999999999999999999863
No 460
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=92.20 E-value=0.077 Score=52.84 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=31.4
Q ss_pred CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.++|+|||+|.+|+..|..|++.|.+|+++.+++
T Consensus 33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~ 66 (498)
T 2iid_A 33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 66 (498)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCC
Confidence 5789999999999999999999999999998764
No 461
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=92.20 E-value=0.13 Score=44.56 Aligned_cols=33 Identities=33% Similarity=0.479 Sum_probs=30.2
Q ss_pred CeEEEEC-cChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIG-AGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIG-aG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++|+||| +|..|...|..|++.|++|++++++.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~ 34 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3799999 99999999999999999999999863
No 462
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Probab=92.15 E-value=0.13 Score=47.61 Aligned_cols=34 Identities=21% Similarity=0.465 Sum_probs=30.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~ 35 (446)
+++|+|||||..|...|..|+..|+ +++++|..+
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~ 49 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE 49 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 4689999999999999999999998 899999864
No 463
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Probab=92.15 E-value=0.11 Score=48.61 Aligned_cols=31 Identities=29% Similarity=0.539 Sum_probs=29.3
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEee
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEK 33 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~ 33 (446)
++|+|||+|.-|...|..|++.|++|+++++
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r 31 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT 31 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence 3799999999999999999999999999998
No 464
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=92.14 E-value=0.16 Score=44.06 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=30.2
Q ss_pred CeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++|+|+|| |..|..+++.|++.|++|+++.|+.
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 34 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA 34 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence 36999997 9999999999999999999999864
No 465
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=92.06 E-value=0.16 Score=46.87 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=31.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|||+|..|..+|+.|...|.+|+++++..
T Consensus 157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~ 190 (300)
T 2rir_A 157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSS 190 (300)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4789999999999999999999999999999853
No 466
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=92.04 E-value=0.1 Score=50.56 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=29.5
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++|+|||+|.-|+..|..|++ |++|+++|+++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~ 32 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP 32 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence 379999999999999999999 99999999864
No 467
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}
Probab=92.02 E-value=0.14 Score=47.63 Aligned_cols=33 Identities=30% Similarity=0.595 Sum_probs=30.7
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++|+|||+|.-|...|..|++.|++|+++++++
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~ 63 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA 63 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 689999999999999999999999999999854
No 468
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=91.99 E-value=0.17 Score=46.62 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=31.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|||+|..|..+|+.|...|.+|+++++..
T Consensus 155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~ 188 (293)
T 3d4o_A 155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARES 188 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4789999999999999999999999999999853
No 469
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Probab=91.99 E-value=0.11 Score=51.31 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=31.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~ 35 (446)
+++|+|||+|.-|+..|..|++. |++|+++|+++
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~ 40 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE 40 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 35899999999999999999998 79999999864
No 470
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1
Probab=91.95 E-value=0.13 Score=48.11 Aligned_cols=33 Identities=21% Similarity=0.470 Sum_probs=30.2
Q ss_pred CeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~ 35 (446)
++|+|||+|..|.+.|..|++.|+ +|+++|+.+
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~ 35 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK 35 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence 479999999999999999999998 999999853
No 471
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=91.93 E-value=0.076 Score=50.19 Aligned_cols=33 Identities=36% Similarity=0.369 Sum_probs=30.9
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
..|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~ 37 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE 37 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 479999999999999999999999999999874
No 472
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=91.87 E-value=0.18 Score=47.01 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=30.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 35 (446)
+++|+|||+|..|.+.|..|+..++ +++++|..+
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~ 39 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ 39 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence 4689999999999999999999888 999999864
No 473
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=91.84 E-value=0.13 Score=44.97 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=31.3
Q ss_pred CCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|+|+|| |..|...++.|++.|++|+++.|..
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP 38 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence 478999997 9999999999999999999999864
No 474
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=91.80 E-value=0.11 Score=49.77 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=31.8
Q ss_pred CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 196 ~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
...+|+|||+|.+|+-+|..|++.|.+|+++.++
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~ 76 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEAN 76 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence 4679999999999999999999999999999987
No 475
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=91.77 E-value=0.13 Score=39.67 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=31.8
Q ss_pred CCCEEEEEecCCcHHHHHHHHhccC-CEEEEEEecCC
Q 013303 196 QDQVVILIGHYASGLDIKRDLAGFA-KEVHIASRSVA 231 (446)
Q Consensus 196 ~~k~VvVVG~G~sg~eia~~l~~~~-~~V~l~~r~~~ 231 (446)
.+++|+|+|+|..|..++..|.+.| .+|+++.|++.
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~ 40 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLA 40 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHH
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHH
Confidence 3578999999999999999999998 88999988654
No 476
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=91.75 E-value=0.11 Score=49.33 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=30.1
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
..|+|||+|.+|+-+|..|++.|.+|+++.+.
T Consensus 7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~ 38 (363)
T 1c0p_A 7 KRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 57999999999999999999999999999974
No 477
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=91.74 E-value=0.1 Score=51.44 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=30.7
Q ss_pred CEEEEEecCCcHHHHHHHHhccCC--EEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAK--EVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~--~V~l~~r~~ 230 (446)
++|+|||+|.+|+-.|..|++.|. +|+++.+++
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~ 37 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSE 37 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSS
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence 589999999999999999999999 999998755
No 478
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=91.73 E-value=0.15 Score=47.24 Aligned_cols=35 Identities=31% Similarity=0.311 Sum_probs=29.7
Q ss_pred CCCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 1 MFRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 1 ~~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
|.++|+|.|| |..|..++..|++.|++|+++++..
T Consensus 1 m~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 36 (315)
T 2ydy_A 1 MNRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRR 36 (315)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC---
T ss_pred CCCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCC
Confidence 5689999999 9999999999999999999998753
No 479
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=91.71 E-value=0.19 Score=45.90 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=31.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC---cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH---TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~---~v~v~e~~~ 35 (446)
+++|.|||+|.-|.+.|..|.+.|+ +|+++++++
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~ 39 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL 39 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence 5789999999999999999999998 899999864
No 480
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=91.69 E-value=0.13 Score=42.20 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=31.7
Q ss_pred CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 196 ~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
..++|+|+|+|..|..++..|.+.+.+|+++.+++
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~ 36 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 35789999999999999999999999999999864
No 481
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=91.66 E-value=0.18 Score=47.12 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=30.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~ 34 (446)
..+|+|||+|-.|..+|+.|++.|. +++++|..
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D 67 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 67 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence 4689999999999999999999997 78999874
No 482
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=91.66 E-value=0.084 Score=50.47 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=30.3
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.+|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~ 36 (389)
T 2gf3_A 4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (389)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 479999999999999999999999999998753
No 483
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=91.60 E-value=0.18 Score=49.91 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=31.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|.|||.|.-|...|..|++.|++|++++++.
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV 37 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999875
No 484
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=91.56 E-value=0.18 Score=45.90 Aligned_cols=33 Identities=24% Similarity=0.493 Sum_probs=30.1
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++|+|||+|.-|.+.|..|.+.|++|+++++++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~ 33 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ 33 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 379999999999999999999999999998853
No 485
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=91.56 E-value=0.21 Score=46.44 Aligned_cols=33 Identities=15% Similarity=0.366 Sum_probs=30.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~ 34 (446)
.++++|+|+|-+|.++|..|++.|. +|+|+.|+
T Consensus 154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~ 187 (315)
T 3tnl_A 154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRK 187 (315)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence 4789999999999999999999998 89999986
No 486
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=91.52 E-value=0.2 Score=43.63 Aligned_cols=32 Identities=38% Similarity=0.581 Sum_probs=29.9
Q ss_pred eEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 4 HVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 4 ~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+|+|+|| |..|..+++.|++.|++|+++.|+.
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 34 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP 34 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence 6999999 9999999999999999999999863
No 487
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=91.52 E-value=0.068 Score=50.82 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=30.3
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
..|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 3 ~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~ 35 (372)
T 2uzz_A 3 YDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM 35 (372)
T ss_dssp EEEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 369999999999999999999999999998764
No 488
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=91.50 E-value=0.15 Score=46.51 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=30.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 35 (446)
.++|+|||+|-+|.++|..|++.|. +|+++.|+.
T Consensus 117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~ 151 (277)
T 3don_A 117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTM 151 (277)
T ss_dssp GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 3689999999999999999999998 899999864
No 489
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=91.48 E-value=0.23 Score=46.56 Aligned_cols=34 Identities=35% Similarity=0.332 Sum_probs=31.5
Q ss_pred CCCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeC
Q 013303 1 MFRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG 34 (446)
Q Consensus 1 ~~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~ 34 (446)
|+++|+|.|| |..|..+++.|++.|++|+++++.
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~ 35 (348)
T 1ek6_A 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF 35 (348)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecC
Confidence 6789999997 999999999999999999999875
No 490
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=91.41 E-value=0.22 Score=45.63 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=32.2
Q ss_pred CeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCCCcC
Q 013303 3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGEQVG 38 (446)
Q Consensus 3 ~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~~~G 38 (446)
++|+|.|| |..|-..+..|.++|++|+++.|++..+
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~ 37 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG 37 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC
Confidence 46999999 9999999999999999999998876443
No 491
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=91.41 E-value=0.17 Score=46.69 Aligned_cols=34 Identities=35% Similarity=0.490 Sum_probs=31.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|+|||+|.-|...|..|++.|++|+++++++
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~ 37 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME 37 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4689999999999999999999999999998853
No 492
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}
Probab=91.40 E-value=0.17 Score=45.55 Aligned_cols=34 Identities=15% Similarity=0.346 Sum_probs=30.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCC----CcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREG----HTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g----~~v~v~e~~~ 35 (446)
+++|.|||+|.-|.+.|..|++.| ++|++++++.
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~ 41 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSK 41 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCc
Confidence 368999999999999999999999 6899999864
No 493
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Probab=91.40 E-value=0.18 Score=47.19 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=30.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~ 35 (446)
.++|+|||+|..|.++|..|+..|+ +++++|...
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~ 40 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK 40 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence 3589999999999999999999987 899999853
No 494
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=91.39 E-value=0.092 Score=51.89 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=31.0
Q ss_pred CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
..+|+|||+|.+|+-.|..|++.|.+|+++.+++
T Consensus 16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~ 49 (478)
T 2ivd_A 16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 49 (478)
T ss_dssp -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 4689999999999999999999999999998865
No 495
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=91.38 E-value=0.2 Score=46.50 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=31.1
Q ss_pred CCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+++|+|+|| |..|...++.|++.|++|+++.|..
T Consensus 11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 45 (318)
T 2r6j_A 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPN 45 (318)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTT
T ss_pred CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCC
Confidence 468999997 9999999999999999999999864
No 496
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A
Probab=91.37 E-value=0.17 Score=46.18 Aligned_cols=34 Identities=29% Similarity=0.504 Sum_probs=30.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|||+|-.|.+.|..|.+.|.+|++++++.
T Consensus 129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~ 162 (275)
T 2hk9_A 129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK 162 (275)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence 3689999999999999999999999999999863
No 497
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=91.36 E-value=0.22 Score=47.84 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=31.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|||+|..|..+++.+.+.|++|++++..+
T Consensus 14 ~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~ 47 (389)
T 3q2o_A 14 GKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTK 47 (389)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 4689999999999999999999999999998754
No 498
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*
Probab=91.36 E-value=0.17 Score=46.48 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=30.2
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++|+|||+|.-|...|..|++.|++|++++++.
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~ 33 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP 33 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 369999999999999999999999999999854
No 499
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=91.33 E-value=0.22 Score=45.56 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=30.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 35 (446)
.++|+|+|+|-+|.+++..|++.|. +|+|+.|+.
T Consensus 127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~ 161 (283)
T 3jyo_A 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence 4789999999999999999999998 699998863
No 500
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=91.32 E-value=0.2 Score=45.71 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=30.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 35 (446)
.++|+|||+|-+|.+++..|.+.|. +|+|+.|+.
T Consensus 122 ~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~ 156 (282)
T 3fbt_A 122 NNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP 156 (282)
T ss_dssp TSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 4789999999999999999999998 899999863
Done!