Query 013304
Match_columns 446
No_of_seqs 185 out of 1167
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 02:29:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05507 Bromo_brd8_like Bromod 100.0 2.8E-29 6.1E-34 215.0 11.8 102 241-342 2-103 (104)
2 cd05496 Bromo_WDR9_II Bromodom 99.9 1.3E-27 2.8E-32 210.1 11.6 105 241-345 4-109 (119)
3 cd05495 Bromo_cbp_like Bromodo 99.9 2.7E-27 5.8E-32 204.4 12.3 102 242-343 3-107 (108)
4 cd05497 Bromo_Brdt_I_like Brom 99.9 1.8E-27 3.9E-32 205.3 10.9 96 246-341 9-106 (107)
5 cd05505 Bromo_WSTF_like Bromod 99.9 2.2E-27 4.8E-32 201.6 10.4 95 244-338 2-96 (97)
6 KOG1474 Transcription initiati 99.9 4.4E-27 9.6E-32 255.1 10.8 106 241-346 221-328 (640)
7 cd05508 Bromo_RACK7 Bromodomai 99.9 1.1E-26 2.4E-31 198.2 10.6 96 243-339 4-99 (99)
8 cd05502 Bromo_tif1_like Bromod 99.9 2.3E-26 4.9E-31 198.1 12.3 104 241-345 3-109 (109)
9 cd05504 Bromo_Acf1_like Bromod 99.9 2.2E-26 4.7E-31 200.9 11.8 101 242-342 12-112 (115)
10 cd05503 Bromo_BAZ2A_B_like Bro 99.9 2.4E-26 5.2E-31 194.4 10.7 96 244-339 2-97 (97)
11 cd05509 Bromo_gcn5_like Bromod 99.9 4.7E-26 1E-30 192.9 11.2 98 244-341 3-100 (101)
12 cd05513 Bromo_brd7_like Bromod 99.9 1E-25 2.2E-30 191.9 10.5 94 244-337 3-96 (98)
13 cd05510 Bromo_SPT7_like Bromod 99.9 1.7E-25 3.6E-30 194.8 11.6 101 242-342 7-109 (112)
14 cd05528 Bromo_AAA Bromodomain; 99.9 1.7E-25 3.7E-30 194.6 11.7 103 242-344 3-109 (112)
15 cd05512 Bromo_brd1_like Bromod 99.9 1.5E-25 3.2E-30 190.7 10.6 92 243-334 2-93 (98)
16 cd05506 Bromo_plant1 Bromodoma 99.9 1.9E-25 4.1E-30 188.4 10.9 96 244-339 2-99 (99)
17 cd05500 Bromo_BDF1_2_I Bromodo 99.9 2.7E-25 5.8E-30 189.7 11.4 99 241-339 3-103 (103)
18 cd05498 Bromo_Brdt_II_like Bro 99.9 2.9E-25 6.2E-30 188.5 10.5 97 243-339 1-102 (102)
19 cd05499 Bromo_BDF1_2_II Bromod 99.9 3.9E-25 8.4E-30 188.1 10.6 96 244-339 2-102 (102)
20 cd05511 Bromo_TFIID Bromodomai 99.9 5.7E-25 1.2E-29 191.0 11.3 100 245-344 3-102 (112)
21 cd05516 Bromo_SNF2L2 Bromodoma 99.9 6.2E-25 1.3E-29 189.3 10.8 99 243-341 2-106 (107)
22 cd05501 Bromo_SP100C_like Brom 99.9 2.7E-24 5.9E-29 184.8 11.9 99 243-344 3-101 (102)
23 cd05529 Bromo_WDR9_I_like Brom 99.9 1E-23 2.2E-28 187.3 11.9 101 240-340 22-126 (128)
24 smart00297 BROMO bromo domain. 99.9 1.2E-23 2.7E-28 177.1 11.7 101 241-341 6-106 (107)
25 cd05524 Bromo_polybromo_I Brom 99.9 1.1E-23 2.3E-28 183.4 11.6 102 244-345 4-111 (113)
26 cd05520 Bromo_polybromo_III Br 99.9 5.6E-24 1.2E-28 182.5 9.6 94 245-338 3-102 (103)
27 cd05515 Bromo_polybromo_V Brom 99.9 9.9E-24 2.1E-28 181.1 10.8 96 244-339 2-103 (105)
28 cd05519 Bromo_SNF2 Bromodomain 99.9 1E-23 2.2E-28 180.0 10.5 95 244-338 2-102 (103)
29 cd05525 Bromo_ASH1 Bromodomain 99.9 4.5E-23 9.8E-28 177.9 10.3 96 243-338 3-104 (106)
30 cd05518 Bromo_polybromo_IV Bro 99.9 4E-23 8.7E-28 177.3 9.9 93 245-337 3-101 (103)
31 cd05517 Bromo_polybromo_II Bro 99.9 7.9E-23 1.7E-27 175.3 10.2 94 244-337 2-101 (103)
32 PF00439 Bromodomain: Bromodom 99.9 1.7E-22 3.6E-27 163.4 9.4 84 247-330 1-84 (84)
33 cd04369 Bromodomain Bromodomai 99.9 2.3E-22 5E-27 163.4 10.0 95 244-338 2-98 (99)
34 cd05492 Bromo_ZMYND11 Bromodom 99.9 4.9E-22 1.1E-26 172.7 11.5 97 246-342 4-106 (109)
35 cd05522 Bromo_Rsc1_2_II Bromod 99.9 5E-22 1.1E-26 170.5 10.4 92 246-337 5-102 (104)
36 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 2.8E-21 6E-26 166.9 10.6 95 244-340 3-103 (106)
37 KOG1245 Chromatin remodeling c 99.7 1.2E-18 2.7E-23 201.5 8.0 111 234-345 1292-1403(1404)
38 cd05526 Bromo_polybromo_VI Bro 99.7 1.6E-17 3.6E-22 144.8 10.4 99 242-342 3-107 (110)
39 COG5076 Transcription factor i 99.7 1.5E-17 3.3E-22 170.0 7.5 89 257-345 163-251 (371)
40 KOG1472 Histone acetyltransfer 99.6 2.8E-15 6.1E-20 163.5 6.0 103 243-345 607-709 (720)
41 cd05494 Bromodomain_1 Bromodom 99.3 1.6E-12 3.4E-17 113.9 3.1 79 242-320 3-90 (114)
42 KOG0955 PHD finger protein BR1 99.2 1E-11 2.2E-16 140.7 7.6 104 242-345 565-668 (1051)
43 KOG0008 Transcription initiati 99.1 1.2E-10 2.5E-15 132.8 6.8 97 246-342 1386-1482(1563)
44 cd05491 Bromo_TBP7_like Bromod 99.0 2E-10 4.3E-15 101.6 4.2 42 280-321 62-103 (119)
45 KOG0008 Transcription initiati 98.9 1.2E-09 2.6E-14 124.8 7.8 99 242-340 1261-1359(1563)
46 KOG0386 Chromatin remodeling c 98.8 9.2E-09 2E-13 115.5 7.3 101 245-345 1027-1133(1157)
47 KOG1474 Transcription initiati 98.7 2.2E-09 4.7E-14 117.8 0.3 93 253-345 3-97 (640)
48 KOG1472 Histone acetyltransfer 98.7 1.1E-08 2.4E-13 112.5 5.4 76 256-331 300-375 (720)
49 KOG1827 Chromatin remodeling c 98.7 2E-08 4.2E-13 109.2 6.8 98 242-339 52-155 (629)
50 KOG1828 IRF-2-binding protein 98.5 1.7E-08 3.8E-13 103.9 0.5 96 246-341 23-118 (418)
51 KOG1828 IRF-2-binding protein 98.3 3.1E-07 6.8E-12 94.8 3.7 89 244-333 210-298 (418)
52 PF00249 Myb_DNA-binding: Myb- 98.1 5.3E-06 1.2E-10 61.6 4.4 45 7-58 2-47 (48)
53 smart00717 SANT SANT SWI3, AD 97.7 6.2E-05 1.3E-09 53.5 4.3 47 7-60 2-48 (49)
54 COG5076 Transcription factor i 97.7 1.3E-05 2.8E-10 82.6 0.8 96 247-342 268-363 (371)
55 cd00167 SANT 'SWI3, ADA2, N-Co 97.4 0.0003 6.4E-09 49.3 4.5 44 8-58 1-44 (45)
56 cd05493 Bromo_ALL-1 Bromodomai 97.0 0.0012 2.7E-08 59.8 5.2 64 282-345 59-122 (131)
57 PF13921 Myb_DNA-bind_6: Myb-l 96.8 0.002 4.4E-08 49.4 4.7 48 9-64 1-49 (60)
58 PF13837 Myb_DNA-bind_4: Myb/S 94.1 0.064 1.4E-06 43.7 3.9 55 8-65 3-70 (90)
59 PLN03212 Transcription repress 93.4 0.079 1.7E-06 52.8 3.9 45 6-57 25-70 (249)
60 PLN03212 Transcription repress 91.8 0.22 4.9E-06 49.7 4.6 49 6-62 78-126 (249)
61 KOG0732 AAA+-type ATPase conta 91.2 0.1 2.2E-06 61.0 1.7 80 242-321 513-601 (1080)
62 PLN03091 hypothetical protein; 91.0 0.22 4.7E-06 53.4 3.8 36 6-41 14-50 (459)
63 KOG0644 Uncharacterized conser 91.0 0.15 3.1E-06 58.3 2.6 61 279-339 1050-1110(1113)
64 KOG0049 Transcription factor, 90.4 0.3 6.4E-06 54.6 4.2 65 6-77 360-426 (939)
65 PLN03091 hypothetical protein; 89.9 0.43 9.4E-06 51.2 4.9 49 6-62 67-115 (459)
66 KOG0457 Histone acetyltransfer 89.3 0.48 1E-05 50.6 4.6 136 5-158 71-210 (438)
67 COG5259 RSC8 RSC chromatin rem 89.0 0.35 7.5E-06 52.2 3.4 45 6-58 279-323 (531)
68 KOG0048 Transcription factor, 88.0 0.62 1.3E-05 45.7 4.2 62 5-66 8-95 (238)
69 COG5114 Histone acetyltransfer 84.4 1.1 2.5E-05 46.4 4.1 46 5-57 62-107 (432)
70 KOG1279 Chromatin remodeling f 82.2 1.4 3E-05 48.3 3.8 49 2-58 249-297 (506)
71 smart00595 MADF subfamily of S 80.5 1.6 3.4E-05 35.6 2.9 28 28-63 29-56 (89)
72 PF12776 Myb_DNA-bind_3: Myb/S 77.9 1.7 3.6E-05 35.8 2.3 36 28-65 33-68 (96)
73 TIGR02894 DNA_bind_RsfA transc 71.5 3.4 7.3E-05 39.1 2.7 50 6-63 4-60 (161)
74 KOG4282 Transcription factor G 71.2 7.4 0.00016 39.9 5.4 37 26-65 83-119 (345)
75 KOG0048 Transcription factor, 70.0 3.1 6.8E-05 40.8 2.3 35 6-41 62-96 (238)
76 TIGR02606 antidote_CC2985 puta 65.9 8.3 0.00018 31.2 3.6 27 286-312 12-38 (69)
77 TIGR01557 myb_SHAQKYF myb-like 65.7 16 0.00035 28.6 5.1 45 7-56 4-51 (57)
78 PF13873 Myb_DNA-bind_5: Myb/S 63.8 15 0.00032 29.4 4.7 52 8-61 4-71 (78)
79 KOG0049 Transcription factor, 62.0 14 0.0003 42.0 5.5 55 6-64 412-466 (939)
80 KOG0644 Uncharacterized conser 61.9 4.8 0.0001 46.6 2.0 83 242-334 74-186 (1113)
81 KOG0050 mRNA splicing protein 58.1 10 0.00023 41.8 3.7 48 4-58 5-52 (617)
82 KOG1827 Chromatin remodeling c 51.8 1.9 4.2E-05 48.2 -3.0 72 262-333 215-286 (629)
83 PF03693 RHH_2: Uncharacterise 51.1 19 0.00041 30.0 3.4 27 286-312 15-41 (80)
84 PRK13923 putative spore coat p 50.2 24 0.00052 33.7 4.4 55 5-62 4-60 (170)
85 PF10545 MADF_DNA_bdg: Alcohol 46.7 24 0.00051 27.8 3.2 31 27-63 27-57 (85)
86 PF04504 DUF573: Protein of un 35.4 1.1E+02 0.0024 26.3 5.9 58 5-64 3-67 (98)
87 PF09111 SLIDE: SLIDE; InterP 29.9 52 0.0011 29.5 3.0 34 7-40 50-86 (118)
88 PF14372 DUF4413: Domain of un 28.4 2.1E+02 0.0045 24.5 6.3 49 294-342 3-51 (101)
89 smart00243 GAS2 Growth-Arrest- 26.4 34 0.00073 28.6 1.1 14 4-17 51-64 (73)
90 PF02187 GAS2: Growth-Arrest-S 25.9 31 0.00068 28.7 0.8 15 4-18 51-65 (73)
91 KOG2359 Uncharacterized conser 23.5 42 0.00091 37.5 1.4 46 17-64 427-477 (688)
92 PF07882 Fucose_iso_N2: L-fuco 23.5 73 0.0016 30.8 2.9 56 267-323 18-73 (181)
93 smart00586 ZnF_DBF Zinc finger 21.7 46 0.001 25.7 1.0 12 49-60 9-20 (49)
94 PRK15365 type III secretion sy 20.5 68 0.0015 28.4 1.8 19 54-72 10-35 (107)
No 1
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=2.8e-29 Score=215.03 Aligned_cols=102 Identities=25% Similarity=0.359 Sum_probs=99.4
Q ss_pred hhhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCC
Q 013304 241 KDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSK 320 (446)
Q Consensus 241 ~~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~ 320 (446)
++|++.|+.||+.|..|+.+++|..||+.+.+|+|+++|++||||+||++||++|.|.++.||.+||.|||+||++||++
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 81 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSS 81 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 013304 321 NTREHKSAFLLRTIVLKTMRQY 342 (446)
Q Consensus 321 ~S~v~~aA~~L~~~f~k~l~~~ 342 (446)
++.+|.+|..|++.|.+.|.+.
T Consensus 82 ~s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 82 DHDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CCHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999998764
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.3e-27 Score=210.14 Aligned_cols=105 Identities=18% Similarity=0.250 Sum_probs=101.1
Q ss_pred hhhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCC
Q 013304 241 KDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSK 320 (446)
Q Consensus 241 ~~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~ 320 (446)
..|++.|..||+.|+.|+.+++|+.|||...+||||+||++||||+||+.||++|.|.++.+|..||+|||.||+.||++
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~ 83 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPN 83 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHhhc
Q 013304 321 -NTREHKSAFLLRTIVLKTMRQYFKD 345 (446)
Q Consensus 321 -~S~v~~aA~~L~~~f~k~l~~~l~~ 345 (446)
++.+|.+|..|..+|.+.+.++.+.
T Consensus 84 ~~s~i~~~a~~L~~~F~~~~~~l~~~ 109 (119)
T cd05496 84 KRSRIYSMTLRLSALFEEHIKKIISD 109 (119)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999887654
No 3
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=2.7e-27 Score=204.38 Aligned_cols=102 Identities=19% Similarity=0.281 Sum_probs=98.4
Q ss_pred hhHHHHHHHHHHHhcC-cccccccCcCCcc--ccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccC
Q 013304 242 DSIDDIKGVFESVAQN-ESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFY 318 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~-k~A~~F~~PVd~~--e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN 318 (446)
++++.|+.||+.|+++ +.+|+|..||++. ++|+||++|++||||+||++||++|.|.++.+|.+||.|||.||+.||
T Consensus 3 ~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN 82 (108)
T cd05495 3 ELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLYN 82 (108)
T ss_pred HHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 6789999999999999 9999999999987 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHh
Q 013304 319 SKNTREHKSAFLLRTIVLKTMRQYF 343 (446)
Q Consensus 319 ~~~S~v~~aA~~L~~~f~k~l~~~l 343 (446)
+++|.+|.+|..|++.|.++|...+
T Consensus 83 ~~~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 83 RKTSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988654
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.8e-27 Score=205.28 Aligned_cols=96 Identities=21% Similarity=0.309 Sum_probs=92.3
Q ss_pred HHHHHHHHHhcCcccccccCcCCcc--ccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCCH
Q 013304 246 DIKGVFESVAQNESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTR 323 (446)
Q Consensus 246 ~L~~IL~~L~~~k~A~~F~~PVd~~--e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S~ 323 (446)
.+..||+.|++|+.|++|..|||.. ++||||+||++||||+||++||++|.|.++.||..||.|||.||+.||+++|.
T Consensus 9 ~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 88 (107)
T cd05497 9 LLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKPGDD 88 (107)
T ss_pred HHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 4568899999999999999999986 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013304 324 EHKSAFLLRTIVLKTMRQ 341 (446)
Q Consensus 324 v~~aA~~L~~~f~k~l~~ 341 (446)
++.+|..|.++|.++|.+
T Consensus 89 i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 89 VVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999999876
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.2e-27 Score=201.57 Aligned_cols=95 Identities=20% Similarity=0.340 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCCH
Q 013304 244 IDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTR 323 (446)
Q Consensus 244 ~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S~ 323 (446)
.+.|..||+.|++++.+++|..||+..++|+||++|++||||+||++||++|.|.|+++|.+||.|||.||+.||++++.
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSY 81 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 013304 324 EHKSAFLLRTIVLKT 338 (446)
Q Consensus 324 v~~aA~~L~~~f~k~ 338 (446)
++.+|..|++.|...
T Consensus 82 i~~~a~~le~~f~~~ 96 (97)
T cd05505 82 VLSCMRKTEQCCVNL 96 (97)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999765
No 6
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.94 E-value=4.4e-27 Score=255.12 Aligned_cols=106 Identities=16% Similarity=0.229 Sum_probs=101.7
Q ss_pred hhhHHHHHHHHHHHhcCcccccccCcCCcc--ccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccC
Q 013304 241 KDSIDDIKGVFESVAQNESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFY 318 (446)
Q Consensus 241 ~~~~k~L~~IL~~L~~~k~A~~F~~PVd~~--e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN 318 (446)
..+.+.|..||..|+.|+++|+|+.|||.. ++||||+||++||||+|||+||++|.|.++.||.+||+|||.|||.||
T Consensus 221 ~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YN 300 (640)
T KOG1474|consen 221 VELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYN 300 (640)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcC
Confidence 477899999999999999999999999997 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 013304 319 SKNTREHKSAFLLRTIVLKTMRQYFKDN 346 (446)
Q Consensus 319 ~~~S~v~~aA~~L~~~f~k~l~~~l~~~ 346 (446)
+++++||.||..|+++|..+|..+....
T Consensus 301 p~g~dV~~Ma~~L~~~Fe~rw~~~~~~~ 328 (640)
T KOG1474|consen 301 PEGSDVYAMAKKLQEVFEERWASMPLEI 328 (640)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 9999999999999999999999866553
No 7
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.1e-26 Score=198.22 Aligned_cols=96 Identities=17% Similarity=0.253 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCC
Q 013304 243 SIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNT 322 (446)
Q Consensus 243 ~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S 322 (446)
....|..+++.|. |+.+|+|..||+..++||||++|++||||+||++||++|.|.+++||.+||.|||.||++||+++|
T Consensus 4 l~~~L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~s 82 (99)
T cd05508 4 LSKLLKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDH 82 (99)
T ss_pred HHHHHHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 4678899999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013304 323 REHKSAFLLRTIVLKTM 339 (446)
Q Consensus 323 ~v~~aA~~L~~~f~k~l 339 (446)
.++.+|..|.+.|..+|
T Consensus 83 ~i~~~A~~l~~~~~~e~ 99 (99)
T cd05508 83 KLTQAAKAIVKICEQEM 99 (99)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999988764
No 8
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.3e-26 Score=198.10 Aligned_cols=104 Identities=17% Similarity=0.247 Sum_probs=100.5
Q ss_pred hhhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhc---CCCCCHHHHHHHHHHHHHHHccc
Q 013304 241 KDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISS---HSIMSIKELFRDLLLLANNAVVF 317 (446)
Q Consensus 241 ~~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLes---g~Y~S~~EF~~Dl~Lmf~NA~~Y 317 (446)
..+.+.|..||..|..|+.+++|..||+. .+|+|+++|++||||+||++||+. |.|.++++|.+||+|||+||+.|
T Consensus 3 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~y 81 (109)
T cd05502 3 PIDQRKCERLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKF 81 (109)
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999 899999999999999999999999 69999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 013304 318 YSKNTREHKSAFLLRTIVLKTMRQYFKD 345 (446)
Q Consensus 318 N~~~S~v~~aA~~L~~~f~k~l~~~l~~ 345 (446)
|++++.++.+|..|++.|.+.|.+++|+
T Consensus 82 N~~~s~i~~~a~~l~~~f~~~~~~~~p~ 109 (109)
T cd05502 82 NEEDSEVAQAGKELELFFEEQLKEILPD 109 (109)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence 9999999999999999999999999874
No 9
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.2e-26 Score=200.87 Aligned_cols=101 Identities=17% Similarity=0.323 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCC
Q 013304 242 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 321 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~ 321 (446)
.....|..||+.|+.++.+++|..||+...+|+||++|++||||+||++||++|.|.|+++|..||.|||+||++||+++
T Consensus 12 ~~~~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~~ 91 (115)
T cd05504 12 LNLSALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPEH 91 (115)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 013304 322 TREHKSAFLLRTIVLKTMRQY 342 (446)
Q Consensus 322 S~v~~aA~~L~~~f~k~l~~~ 342 (446)
|.+|.+|..|+++|.+++++.
T Consensus 92 s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 92 TSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999864
No 10
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.4e-26 Score=194.38 Aligned_cols=96 Identities=21% Similarity=0.364 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCCH
Q 013304 244 IDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTR 323 (446)
Q Consensus 244 ~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S~ 323 (446)
...|..||+.|..|+.+++|..||+...+|+|+++|++||||+||++||++|.|.|+++|.+||.|||.||+.||++++.
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSE 81 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 013304 324 EHKSAFLLRTIVLKTM 339 (446)
Q Consensus 324 v~~aA~~L~~~f~k~l 339 (446)
++.+|..|+++|.++|
T Consensus 82 i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 82 VGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998764
No 11
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.7e-26 Score=192.94 Aligned_cols=98 Identities=23% Similarity=0.403 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCCH
Q 013304 244 IDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTR 323 (446)
Q Consensus 244 ~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S~ 323 (446)
.+.|..||+.|..|+.+++|..||+...+|+|+++|++||||+||++||+.|.|.|+.+|..||.|||.||+.||++++.
T Consensus 3 ~~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~ 82 (101)
T cd05509 3 YTQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTE 82 (101)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013304 324 EHKSAFLLRTIVLKTMRQ 341 (446)
Q Consensus 324 v~~aA~~L~~~f~k~l~~ 341 (446)
++.+|..|++.|++.|.+
T Consensus 83 ~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 83 YYKCANKLEKFFWKKLKE 100 (101)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999999876
No 12
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1e-25 Score=191.93 Aligned_cols=94 Identities=21% Similarity=0.270 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCCH
Q 013304 244 IDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTR 323 (446)
Q Consensus 244 ~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S~ 323 (446)
.+.|..||+.|+.++.+++|..||+...+|+||++|++||||+||++||+++.|.|+++|.+||.|||.||+.||+++|.
T Consensus 3 ~~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~ 82 (98)
T cd05513 3 QKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDTI 82 (98)
T ss_pred HHHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 013304 324 EHKSAFLLRTIVLK 337 (446)
Q Consensus 324 v~~aA~~L~~~f~k 337 (446)
+|.+|..|++.-.+
T Consensus 83 ~~~~A~~L~~~~~~ 96 (98)
T cd05513 83 YYKAAKKLLHSGMK 96 (98)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999875443
No 13
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.7e-25 Score=194.82 Aligned_cols=101 Identities=17% Similarity=0.280 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHHHhcC-cccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCC
Q 013304 242 DSIDDIKGVFESVAQN-ESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSK 320 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~-k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~ 320 (446)
...+.|..||+.|++| +++++|..||+..++|+||++|++||||+||++||++|.|.|+++|.+||.|||+||+.||++
T Consensus 7 ~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN~~ 86 (112)
T cd05510 7 EFYESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNSD 86 (112)
T ss_pred HHHHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5678999999999999 899999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC-HHHHHHHHHHHHHHHHHHHH
Q 013304 321 NT-REHKSAFLLRTIVLKTMRQY 342 (446)
Q Consensus 321 ~S-~v~~aA~~L~~~f~k~l~~~ 342 (446)
++ .++.+|..|++.|.+.|..+
T Consensus 87 ~s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 87 PSHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHC
Confidence 65 67899999999999888763
No 14
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.93 E-value=1.7e-25 Score=194.63 Aligned_cols=103 Identities=20% Similarity=0.322 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCC
Q 013304 242 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 321 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~ 321 (446)
..+..|..|++.|++|+.+++|.+||+.+++|+||++|++||||+||++||++|.|.|+.||.+||.|||+||+.||+++
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~ 82 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDR 82 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred ----CHHHHHHHHHHHHHHHHHHHHhh
Q 013304 322 ----TREHKSAFLLRTIVLKTMRQYFK 344 (446)
Q Consensus 322 ----S~v~~aA~~L~~~f~k~l~~~l~ 344 (446)
+.++.+|..|++.|.+.+.+.+|
T Consensus 83 s~~~s~i~~~A~~L~~~~~~~~~~~~~ 109 (112)
T cd05528 83 DPADKLIRSRACELRDEVHAMIEAELD 109 (112)
T ss_pred CccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 69999999999999999988765
No 15
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.5e-25 Score=190.66 Aligned_cols=92 Identities=22% Similarity=0.327 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCC
Q 013304 243 SIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNT 322 (446)
Q Consensus 243 ~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S 322 (446)
+...|..||++|..|+.+++|..||+..++|+|+++|++||||+||++||++|.|.+++||..||+|||+||+.||++++
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s 81 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDT 81 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 013304 323 REHKSAFLLRTI 334 (446)
Q Consensus 323 ~v~~aA~~L~~~ 334 (446)
.+|++|..|++.
T Consensus 82 ~~~~~A~~l~~~ 93 (98)
T cd05512 82 IFYRAAVRLRDQ 93 (98)
T ss_pred HHHHHHHHHHHh
Confidence 999999999874
No 16
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.9e-25 Score=188.43 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhcCcccccccCcCCcc--ccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCC
Q 013304 244 IDDIKGVFESVAQNESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 321 (446)
Q Consensus 244 ~k~L~~IL~~L~~~k~A~~F~~PVd~~--e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~ 321 (446)
.+.|..||+.|++++.+++|..||+.. ++|+|+++|++||||+||+.||++|.|.++.+|..||.|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 367999999999999999999999986 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 013304 322 TREHKSAFLLRTIVLKTM 339 (446)
Q Consensus 322 S~v~~aA~~L~~~f~k~l 339 (446)
|.+|.+|..|++.|++++
T Consensus 82 s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 82 NDVHTMAKELLKIFETRW 99 (99)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999998763
No 17
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.7e-25 Score=189.73 Aligned_cols=99 Identities=21% Similarity=0.263 Sum_probs=95.0
Q ss_pred hhhHHHHHHHHHHHhcCcccccccCcCCcc--ccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccC
Q 013304 241 KDSIDDIKGVFESVAQNESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFY 318 (446)
Q Consensus 241 ~~~~k~L~~IL~~L~~~k~A~~F~~PVd~~--e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN 318 (446)
..+.+.|..||+.|.+++.+++|..||++. .+|+|+++|++||||+||++||++|.|.++.+|..||.|||+||+.||
T Consensus 3 ~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 82 (103)
T cd05500 3 KHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFN 82 (103)
T ss_pred HHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 367899999999999999999999999976 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 013304 319 SKNTREHKSAFLLRTIVLKTM 339 (446)
Q Consensus 319 ~~~S~v~~aA~~L~~~f~k~l 339 (446)
+++|.++.+|..|++.|++.|
T Consensus 83 ~~~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 83 GPEHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999998764
No 18
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.9e-25 Score=188.46 Aligned_cols=97 Identities=19% Similarity=0.300 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHhcC---cccccccCcCCcc--ccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHccc
Q 013304 243 SIDDIKGVFESVAQN---ESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVF 317 (446)
Q Consensus 243 ~~k~L~~IL~~L~~~---k~A~~F~~PVd~~--e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~Y 317 (446)
+.+.|..||+.|+.+ +.+++|..||+.. ++|+|+++|++||||+||++||++|.|.|+++|..||+|||.||+.|
T Consensus 1 ~~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 80 (102)
T cd05498 1 QLKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKY 80 (102)
T ss_pred ChhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 357899999999999 8899999999986 69999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 013304 318 YSKNTREHKSAFLLRTIVLKTM 339 (446)
Q Consensus 318 N~~~S~v~~aA~~L~~~f~k~l 339 (446)
|+++|.++.+|..|++.|.+.+
T Consensus 81 n~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 81 NPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998763
No 19
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3.9e-25 Score=188.05 Aligned_cols=96 Identities=21% Similarity=0.261 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhcC---cccccccCcCCcc--ccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccC
Q 013304 244 IDDIKGVFESVAQN---ESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFY 318 (446)
Q Consensus 244 ~k~L~~IL~~L~~~---k~A~~F~~PVd~~--e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN 318 (446)
.+.|..||+.|+++ ..+++|..|||.. ++|+||++|++||||+||++||++|.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 46889999999984 5799999999998 999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 013304 319 SKNTREHKSAFLLRTIVLKTM 339 (446)
Q Consensus 319 ~~~S~v~~aA~~L~~~f~k~l 339 (446)
++++.++.+|..|++.|++.|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999998764
No 20
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=5.7e-25 Score=190.99 Aligned_cols=100 Identities=23% Similarity=0.335 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCCHH
Q 013304 245 DDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTRE 324 (446)
Q Consensus 245 k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S~v 324 (446)
-.|..|++.|++|+.+++|..||++..+|+||++|++||||+||++||++|.|.++++|.+||.|||.||+.||++++.+
T Consensus 3 ~~l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i 82 (112)
T cd05511 3 FILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSVY 82 (112)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 013304 325 HKSAFLLRTIVLKTMRQYFK 344 (446)
Q Consensus 325 ~~aA~~L~~~f~k~l~~~l~ 344 (446)
+.+|..|++.|.+.|.++-.
T Consensus 83 ~~~A~~l~~~~~~~~~~~~~ 102 (112)
T cd05511 83 TKKAKEMLELAEELLAEREE 102 (112)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999887643
No 21
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=6.2e-25 Score=189.25 Aligned_cols=99 Identities=19% Similarity=0.341 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHhcCcc------cccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcc
Q 013304 243 SIDDIKGVFESVAQNES------AFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVV 316 (446)
Q Consensus 243 ~~k~L~~IL~~L~~~k~------A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~ 316 (446)
..+.|..||+.|..+++ +++|..||+...+||||++|++||||+||++||++|.|.++.+|..||.|||.||+.
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 81 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQT 81 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 35789999999999887 899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH
Q 013304 317 FYSKNTREHKSAFLLRTIVLKTMRQ 341 (446)
Q Consensus 317 YN~~~S~v~~aA~~L~~~f~k~l~~ 341 (446)
||+++|.+|.+|..|+++|...+++
T Consensus 82 yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 82 FNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998875
No 22
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.7e-24 Score=184.83 Aligned_cols=99 Identities=14% Similarity=0.202 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCC
Q 013304 243 SIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNT 322 (446)
Q Consensus 243 ~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S 322 (446)
..+.|..||..|+.++.+++|..+ +..+||||++|++||||+||++||.+|.|.++.+|.+||+|||+||+.||+++
T Consensus 3 ~l~~ce~il~~l~~~~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~- 79 (102)
T cd05501 3 ELLKCEFLLLKVYCMSKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD- 79 (102)
T ss_pred HHHHHHHHHHHHHhCcccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-
Confidence 456799999999999999999763 45899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 013304 323 REHKSAFLLRTIVLKTMRQYFK 344 (446)
Q Consensus 323 ~v~~aA~~L~~~f~k~l~~~l~ 344 (446)
.++.+|..|.+.|.+.+.+.+.
T Consensus 80 ~~~~~a~~L~~~Fek~~~~~f~ 101 (102)
T cd05501 80 DFGQVGITLEKKFEKNFKEVFA 101 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999988763
No 23
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1e-23 Score=187.25 Aligned_cols=101 Identities=25% Similarity=0.288 Sum_probs=97.0
Q ss_pred ChhhHHHHHHHHHHHh---cCcccccccCcCCcc-ccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHc
Q 013304 240 RKDSIDDIKGVFESVA---QNESAFVFRHRLDSQ-KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAV 315 (446)
Q Consensus 240 ~~~~~k~L~~IL~~L~---~~k~A~~F~~PVd~~-e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~ 315 (446)
.....+.|+.+|+.|. .++.+++|..||+.. .+|+||++|++||||+||++||++|.|+++++|..||.|||.||+
T Consensus 22 ~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~ 101 (128)
T cd05529 22 RDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAE 101 (128)
T ss_pred CHHHHHHHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4578899999999999 999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHH
Q 013304 316 VFYSKNTREHKSAFLLRTIVLKTMR 340 (446)
Q Consensus 316 ~YN~~~S~v~~aA~~L~~~f~k~l~ 340 (446)
.||++++.++.+|..|+..|.+.+.
T Consensus 102 ~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 102 TFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999988765
No 24
>smart00297 BROMO bromo domain.
Probab=99.90 E-value=1.2e-23 Score=177.13 Aligned_cols=101 Identities=23% Similarity=0.359 Sum_probs=97.2
Q ss_pred hhhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCC
Q 013304 241 KDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSK 320 (446)
Q Consensus 241 ~~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~ 320 (446)
+.....|..|++.+.+|+.+++|..||+...+|+|+++|++||||.||++||++|.|.++.+|.+||.|||.||+.||++
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~~ 85 (107)
T smart00297 6 KKLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNGP 85 (107)
T ss_pred HHHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 013304 321 NTREHKSAFLLRTIVLKTMRQ 341 (446)
Q Consensus 321 ~S~v~~aA~~L~~~f~k~l~~ 341 (446)
++.++.+|..|++.|.+.|++
T Consensus 86 ~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 86 DSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998875
No 25
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=1.1e-23 Score=183.42 Aligned_cols=102 Identities=20% Similarity=0.333 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHhcCc------ccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHccc
Q 013304 244 IDDIKGVFESVAQNE------SAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVF 317 (446)
Q Consensus 244 ~k~L~~IL~~L~~~k------~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~Y 317 (446)
.+.|..||+.|.+++ .+.+|.++++...+|+||++|++||||+||++||++|.|.|+++|..||.|||+||+.|
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 83 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAY 83 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 578999999999754 45689999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 013304 318 YSKNTREHKSAFLLRTIVLKTMRQYFKD 345 (446)
Q Consensus 318 N~~~S~v~~aA~~L~~~f~k~l~~~l~~ 345 (446)
|+++|.+|.+|..|+++|.+.+++.+..
T Consensus 84 N~~~s~~~~~A~~L~~~f~~~~~~~~~~ 111 (113)
T cd05524 84 YKPDSPEHKDACKLWELFLSARNEVLSG 111 (113)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999998887654
No 26
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=5.6e-24 Score=182.47 Aligned_cols=94 Identities=21% Similarity=0.265 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhcCc------ccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccC
Q 013304 245 DDIKGVFESVAQNE------SAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFY 318 (446)
Q Consensus 245 k~L~~IL~~L~~~k------~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN 318 (446)
.+|..|++.|..++ .+++|.+|++...+|+||++|++||||+||++||+.|.|.++.+|..||.|||.||+.||
T Consensus 3 ~~~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN 82 (103)
T cd05520 3 NPLWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYN 82 (103)
T ss_pred chHHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 46788888888764 688999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 013304 319 SKNTREHKSAFLLRTIVLKT 338 (446)
Q Consensus 319 ~~~S~v~~aA~~L~~~f~k~ 338 (446)
++++.+|.+|..|+++|.+.
T Consensus 83 ~~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 83 VPNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999998753
No 27
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=9.9e-24 Score=181.10 Aligned_cols=96 Identities=21% Similarity=0.392 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHhcC------cccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHccc
Q 013304 244 IDDIKGVFESVAQN------ESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVF 317 (446)
Q Consensus 244 ~k~L~~IL~~L~~~------k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~Y 317 (446)
.+.|..||+.|..+ +.+++|..||+..++|+||++|++||||+||++||+++.|.++++|..||.|||.||+.|
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~y 81 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKY 81 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35678888888764 457899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 013304 318 YSKNTREHKSAFLLRTIVLKTM 339 (446)
Q Consensus 318 N~~~S~v~~aA~~L~~~f~k~l 339 (446)
|+++|.+|.+|..|+++|.+..
T Consensus 82 N~~~s~i~~~A~~L~~~~~~~~ 103 (105)
T cd05515 82 NEPDSQIYKDALTLQKVLLETK 103 (105)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 28
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1e-23 Score=180.02 Aligned_cols=95 Identities=17% Similarity=0.272 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhcC------cccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHccc
Q 013304 244 IDDIKGVFESVAQN------ESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVF 317 (446)
Q Consensus 244 ~k~L~~IL~~L~~~------k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~Y 317 (446)
++.|..||+.|..+ +.+++|.+|++...+|+||++|++||||+||++||+.|.|.|+.+|..||.|||.||+.|
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 81 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTY 81 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46789999999954 458999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 013304 318 YSKNTREHKSAFLLRTIVLKT 338 (446)
Q Consensus 318 N~~~S~v~~aA~~L~~~f~k~ 338 (446)
|++++.+|.+|..|++.|.+.
T Consensus 82 n~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 82 NQEGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 29
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=4.5e-23 Score=177.88 Aligned_cols=96 Identities=18% Similarity=0.232 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHhcCc------ccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcc
Q 013304 243 SIDDIKGVFESVAQNE------SAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVV 316 (446)
Q Consensus 243 ~~k~L~~IL~~L~~~k------~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~ 316 (446)
..+.|..||+.|...+ .+++|.++++...+|+||++|++||||+||++||++|.|.|+++|..||.|||.||+.
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~ 82 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEK 82 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3467888888888754 4699999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 013304 317 FYSKNTREHKSAFLLRTIVLKT 338 (446)
Q Consensus 317 YN~~~S~v~~aA~~L~~~f~k~ 338 (446)
||+++|.+|.+|..|+++|.+.
T Consensus 83 yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 83 YYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HCCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999998763
No 30
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=4e-23 Score=177.27 Aligned_cols=93 Identities=20% Similarity=0.308 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcC------cccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccC
Q 013304 245 DDIKGVFESVAQN------ESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFY 318 (446)
Q Consensus 245 k~L~~IL~~L~~~------k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN 318 (446)
+.|..|++.|... ..+.+|..+++...+||||++|++||||+||+.||++|.|.|+++|..||.|||.||+.||
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 82 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYN 82 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5577777777664 5688999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 013304 319 SKNTREHKSAFLLRTIVLK 337 (446)
Q Consensus 319 ~~~S~v~~aA~~L~~~f~k 337 (446)
+++|.+|.+|..|+++|.+
T Consensus 83 ~~~s~i~~~A~~le~~~~~ 101 (103)
T cd05518 83 EEGSQVYEDANILEKVLKE 101 (103)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999998865
No 31
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=7.9e-23 Score=175.34 Aligned_cols=94 Identities=22% Similarity=0.273 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhcCcc------cccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHccc
Q 013304 244 IDDIKGVFESVAQNES------AFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVF 317 (446)
Q Consensus 244 ~k~L~~IL~~L~~~k~------A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~Y 317 (446)
.+.|..||+.|..+.+ +++|.++++..++|+||++|++||||+||++||+.+.|.++.+|..||.|||.||+.|
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 81 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTF 81 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4677888888887654 6899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 013304 318 YSKNTREHKSAFLLRTIVLK 337 (446)
Q Consensus 318 N~~~S~v~~aA~~L~~~f~k 337 (446)
|+++|.+|.+|..|+++|..
T Consensus 82 N~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 82 NEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998864
No 32
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.88 E-value=1.7e-22 Score=163.42 Aligned_cols=84 Identities=24% Similarity=0.316 Sum_probs=79.8
Q ss_pred HHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCCHHHH
Q 013304 247 IKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREHK 326 (446)
Q Consensus 247 L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S~v~~ 326 (446)
|..||+.|+.|+.+++|..||+....|+|+++|++||||.||++||++|.|.++.+|..||.|||.||+.||++++.+|.
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~ 80 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYK 80 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 013304 327 SAFL 330 (446)
Q Consensus 327 aA~~ 330 (446)
+|.+
T Consensus 81 ~A~~ 84 (84)
T PF00439_consen 81 AAEK 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9974
No 33
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.88 E-value=2.3e-22 Score=163.36 Aligned_cols=95 Identities=20% Similarity=0.289 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhcC--cccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCC
Q 013304 244 IDDIKGVFESVAQN--ESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 321 (446)
Q Consensus 244 ~k~L~~IL~~L~~~--k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~ 321 (446)
...|..|++.|..+ +.+++|..||+...+|+|+++|++||||.+|+.||..|.|.++.+|..||.|||.||+.||+++
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~ 81 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPG 81 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 35788999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 013304 322 TREHKSAFLLRTIVLKT 338 (446)
Q Consensus 322 S~v~~aA~~L~~~f~k~ 338 (446)
+.++.+|..|+..|.+.
T Consensus 82 ~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 82 SPIYKDAKKLEKLFEKL 98 (99)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999998765
No 34
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=4.9e-22 Score=172.71 Aligned_cols=97 Identities=23% Similarity=0.285 Sum_probs=88.9
Q ss_pred HHHHHHHHHhc-CcccccccCcCCcc-----ccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCC
Q 013304 246 DIKGVFESVAQ-NESAFVFRHRLDSQ-----KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYS 319 (446)
Q Consensus 246 ~L~~IL~~L~~-~k~A~~F~~PVd~~-----e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~ 319 (446)
.|..++..+.+ -+-.++|+.||+.. ++|+|+++|++||||+||++||++|.|++++||.+||.|||+||++||+
T Consensus 4 ~L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg 83 (109)
T cd05492 4 LLKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHG 83 (109)
T ss_pred hHHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 46677888887 56679999999732 5999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 013304 320 KNTREHKSAFLLRTIVLKTMRQY 342 (446)
Q Consensus 320 ~~S~v~~aA~~L~~~f~k~l~~~ 342 (446)
++|.++.+|..|.+.+...|.++
T Consensus 84 ~~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 84 ADSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998875
No 35
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=5e-22 Score=170.46 Aligned_cols=92 Identities=22% Similarity=0.350 Sum_probs=84.9
Q ss_pred HHHHHHHHHhc------CcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCC
Q 013304 246 DIKGVFESVAQ------NESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYS 319 (446)
Q Consensus 246 ~L~~IL~~L~~------~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~ 319 (446)
.|..|++.|.+ ++.+++|.++++.+..|+||++|++||||+||++||..|.|.++++|..||.|||.||+.||+
T Consensus 5 ~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~ 84 (104)
T cd05522 5 RIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNE 84 (104)
T ss_pred HHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45566666655 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 013304 320 KNTREHKSAFLLRTIVLK 337 (446)
Q Consensus 320 ~~S~v~~aA~~L~~~f~k 337 (446)
+++.+|.+|..|++.|.+
T Consensus 85 ~~s~i~~~A~~l~~~f~~ 102 (104)
T cd05522 85 NDSQEYKDAVLLEKEARL 102 (104)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999998876
No 36
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=2.8e-21 Score=166.90 Aligned_cols=95 Identities=16% Similarity=0.262 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhcCcc------cccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHccc
Q 013304 244 IDDIKGVFESVAQNES------AFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVF 317 (446)
Q Consensus 244 ~k~L~~IL~~L~~~k~------A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~Y 317 (446)
.+.|..||+.|.+.+. +.+|..+++...+|+||++|++||||+||++||+. |.++++|..||.|||.||..|
T Consensus 3 ~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~y 80 (106)
T cd05521 3 SKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARLY 80 (106)
T ss_pred HHHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHH
Confidence 4678889998887654 45999999988999999999999999999999998 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 013304 318 YSKNTREHKSAFLLRTIVLKTMR 340 (446)
Q Consensus 318 N~~~S~v~~aA~~L~~~f~k~l~ 340 (446)
|++++.+|.+|..|+++|.+.+.
T Consensus 81 N~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 81 NTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred cCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999988763
No 37
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.75 E-value=1.2e-18 Score=201.48 Aligned_cols=111 Identities=23% Similarity=0.343 Sum_probs=100.1
Q ss_pred cccCCcChhhHHH-HHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 013304 234 DQSGSLRKDSIDD-IKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLAN 312 (446)
Q Consensus 234 ~~~~~~~~~~~k~-L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~ 312 (446)
++++......++. |..||..|..|+.||||+.||+...+|+||+||++||||+||+.||..|.|.+..+|..||.|||.
T Consensus 1292 ~~sr~~~~~~re~~~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~ 1371 (1404)
T KOG1245|consen 1292 DQSRSIKLENRESTCEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFD 1371 (1404)
T ss_pred chhhhhhhhcchhhHHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence 4444333334444 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 013304 313 NAVVFYSKNTREHKSAFLLRTIVLKTMRQYFKD 345 (446)
Q Consensus 313 NA~~YN~~~S~v~~aA~~L~~~f~k~l~~~l~~ 345 (446)
||..||.+ +.++++...|+++|.+.+...++.
T Consensus 1372 Nc~~yN~~-s~i~~ag~~l~~ff~~~~~~~~~~ 1403 (1404)
T KOG1245|consen 1372 NCETYNED-SEIGRAGTCLRRFFHKRWRKKFPV 1403 (1404)
T ss_pred HHHHhccc-hhhhhhcchHHHHHHHHHHhhcCC
Confidence 99999999 999999999999999988776653
No 38
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.73 E-value=1.6e-17 Score=144.75 Aligned_cols=99 Identities=10% Similarity=0.063 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHHhcCc------ccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHc
Q 013304 242 DSIDDIKGVFESVAQNE------SAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAV 315 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k------~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~ 315 (446)
.-.+.|..|++.|+.|. .+.+|.+... ..++|+.+|++||||.+|++||+.|.|.++++|..||.|||+||.
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr 80 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERAR 80 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHH
Confidence 34678999999999986 4568888666 456788999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013304 316 VFYSKNTREHKSAFLLRTIVLKTMRQY 342 (446)
Q Consensus 316 ~YN~~~S~v~~aA~~L~~~f~k~l~~~ 342 (446)
.||.++|.+|.+|.+|+.+|.+.-.+.
T Consensus 81 ~yN~~~S~iy~dA~eLq~~f~~~rd~~ 107 (110)
T cd05526 81 RLSRTDSEIYEDAVELQQFFIKIRDEL 107 (110)
T ss_pred HhCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998775543
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.70 E-value=1.5e-17 Score=169.96 Aligned_cols=89 Identities=20% Similarity=0.230 Sum_probs=84.9
Q ss_pred CcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHHHH
Q 013304 257 NESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREHKSAFLLRTIVL 336 (446)
Q Consensus 257 ~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S~v~~aA~~L~~~f~ 336 (446)
....++|..+++....|+||.||+.||||.||+++|+.+.|.+++||..||+|||+||..||.+++.+|.+|..|+..|.
T Consensus 163 ~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~ 242 (371)
T COG5076 163 RFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFL 242 (371)
T ss_pred cccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 013304 337 KTMRQYFKD 345 (446)
Q Consensus 337 k~l~~~l~~ 345 (446)
..+..+...
T Consensus 243 ~~i~~~~~~ 251 (371)
T COG5076 243 KLIEEIPEE 251 (371)
T ss_pred HHHHhcccc
Confidence 999876554
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.55 E-value=2.8e-15 Score=163.47 Aligned_cols=103 Identities=15% Similarity=0.300 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCC
Q 013304 243 SIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNT 322 (446)
Q Consensus 243 ~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S 322 (446)
-.-.+..||..|..|.++|||.+||+..++||||++|++||||.||+.+|..++|....+|.+|+..||+||.+||+.++
T Consensus 607 ~~s~~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~~ 686 (720)
T KOG1472|consen 607 LFSAIQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSDT 686 (720)
T ss_pred hhHHHHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCccc
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 013304 323 REHKSAFLLRTIVLKTMRQYFKD 345 (446)
Q Consensus 323 ~v~~aA~~L~~~f~k~l~~~l~~ 345 (446)
.+|+.|..|..+|...|.+.+.-
T Consensus 687 ~y~k~~~~le~~~~~k~~~~i~~ 709 (720)
T KOG1472|consen 687 QYYKCAQALEKFFLFKLNELILR 709 (720)
T ss_pred hheecccchhhhhcchhhhhhhh
Confidence 99999999999999998876543
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.28 E-value=1.6e-12 Score=113.91 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHHhcCcccccccCcCCc--cccchhHHhhcCCCCHHHHHHHhhcCCC-------CCHHHHHHHHHHHHH
Q 013304 242 DSIDDIKGVFESVAQNESAFVFRHRLDS--QKRGRYKKMILRHMDVDTIRSKISSHSI-------MSIKELFRDLLLLAN 312 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~A~~F~~PVd~--~e~PdY~~IIK~PMDLsTIKkKLesg~Y-------~S~~EF~~Dl~Lmf~ 312 (446)
...+.|+.+|..+..++.+|+|..||++ .++|||+++|++||||+||+++|..+.| .--..+..++..++.
T Consensus 3 e~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T cd05494 3 EALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEG 82 (114)
T ss_pred HHHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccc
Confidence 3456778888888888899999999999 7999999999999999999999999744 333345556666666
Q ss_pred HHcccCCC
Q 013304 313 NAVVFYSK 320 (446)
Q Consensus 313 NA~~YN~~ 320 (446)
||.-||..
T Consensus 83 ~~~~~~~~ 90 (114)
T cd05494 83 RRSPSNIY 90 (114)
T ss_pred ccCccccc
Confidence 66665553
No 42
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.24 E-value=1e-11 Score=140.68 Aligned_cols=104 Identities=21% Similarity=0.308 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCC
Q 013304 242 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 321 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~ 321 (446)
.-.+.|..+|+.|...+...+|..|||..++|||.+||++||||.||+.++++|.|+++++|..|+.||+.||+.||..+
T Consensus 565 p~~kLl~~~l~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~d 644 (1051)
T KOG0955|consen 565 PFKKLLQKSLDKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAKD 644 (1051)
T ss_pred hHHHHHHHHHHHhhcccccCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhccC
Confidence 34667779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhc
Q 013304 322 TREHKSAFLLRTIVLKTMRQYFKD 345 (446)
Q Consensus 322 S~v~~aA~~L~~~f~k~l~~~l~~ 345 (446)
+.+|.+|..|++.+...+.+....
T Consensus 645 tv~~r~av~~~e~~~~~~~~arke 668 (1051)
T KOG0955|consen 645 TVYYRAAVRLRELIKKDFRNARKE 668 (1051)
T ss_pred eehHhhhHHHHhhhhhHHHhcccc
Confidence 999999999999988877654433
No 43
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=99.08 E-value=1.2e-10 Score=132.75 Aligned_cols=97 Identities=21% Similarity=0.312 Sum_probs=85.7
Q ss_pred HHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCCHHH
Q 013304 246 DIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREH 325 (446)
Q Consensus 246 ~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S~v~ 325 (446)
.|-.|..++..-+.+|+|+.||+...+|+||.+|++||||.||.+++..+.|.+..||.+||.||+.||..||+..+.+.
T Consensus 1386 ~~d~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~ 1465 (1563)
T KOG0008|consen 1386 ILDNIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYT 1465 (1563)
T ss_pred hhhhHHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCcccccc
Confidence 34455666777889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013304 326 KSAFLLRTIVLKTMRQY 342 (446)
Q Consensus 326 ~aA~~L~~~f~k~l~~~ 342 (446)
.-|+++-++....+.+.
T Consensus 1466 ~k~~k~~ev~~~~~~e~ 1482 (1563)
T KOG0008|consen 1466 KKARKIGEVGLANLLEY 1482 (1563)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88887776655554443
No 44
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.02 E-value=2e-10 Score=101.61 Aligned_cols=42 Identities=19% Similarity=0.353 Sum_probs=40.0
Q ss_pred cCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCC
Q 013304 280 LRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 321 (446)
Q Consensus 280 K~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~ 321 (446)
-.||||+||++||.+|+|.++.+|++||.|||.||..||.++
T Consensus 62 ~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 62 FYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred EeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 369999999999999999999999999999999999999875
No 45
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.95 E-value=1.2e-09 Score=124.79 Aligned_cols=99 Identities=10% Similarity=0.233 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCC
Q 013304 242 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 321 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~ 321 (446)
...-.|..|++++...++..+|..||+..+++|||.||+.||||.|||+.|....|.+-++|+.|+.||+.|..+||++.
T Consensus 1261 ~~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~ 1340 (1563)
T KOG0008|consen 1261 SLSSILETIINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPL 1340 (1563)
T ss_pred ecccchHHHHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCch
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 013304 322 TREHKSAFLLRTIVLKTMR 340 (446)
Q Consensus 322 S~v~~aA~~L~~~f~k~l~ 340 (446)
+.+...+..|...+...|.
T Consensus 1341 ~~~t~~~q~mls~~~~~~~ 1359 (1563)
T KOG0008|consen 1341 ASLTRQQQSMLSLCFEKLK 1359 (1563)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999988777666553
No 46
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.78 E-value=9.2e-09 Score=115.48 Aligned_cols=101 Identities=22% Similarity=0.350 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhcCcc------cccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccC
Q 013304 245 DDIKGVFESVAQNES------AFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFY 318 (446)
Q Consensus 245 k~L~~IL~~L~~~k~------A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN 318 (446)
+.+..|+.....+.. ...|.........||||.||+.|||+..|+++|.++.|.+..++..||.+||+||.+||
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~ 1106 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYN 1106 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhc
Confidence 678888888876544 56899988889999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 013304 319 SKNTREHKSAFLLRTIVLKTMRQYFKD 345 (446)
Q Consensus 319 ~~~S~v~~aA~~L~~~f~k~l~~~l~~ 345 (446)
..+|.+|..|..|+.+|......+...
T Consensus 1107 ~egs~~y~d~~~l~~~~~~~~~~~~~~ 1133 (1157)
T KOG0386|consen 1107 EEGSRVYEDAIVLQSVFKSARQEISKE 1133 (1157)
T ss_pred cCCceechhHHHHHHHHhhhHHHHhcc
Confidence 999999999999999888777666543
No 47
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.73 E-value=2.2e-09 Score=117.79 Aligned_cols=93 Identities=20% Similarity=0.281 Sum_probs=86.1
Q ss_pred HHhcCcccccccCcCCcc--ccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCCHHHHHHHH
Q 013304 253 SVAQNESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREHKSAFL 330 (446)
Q Consensus 253 ~L~~~k~A~~F~~PVd~~--e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S~v~~aA~~ 330 (446)
.+..|.++|+|..||+.. .+|+||.+|++|||+.||..++++.+|.+..+..+|+..+|.||..||.+...++.++..
T Consensus 3 ~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~ 82 (640)
T KOG1474|consen 3 EARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQS 82 (640)
T ss_pred ccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhcccc
Confidence 456789999999999976 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 013304 331 LRTIVLKTMRQYFKD 345 (446)
Q Consensus 331 L~~~f~k~l~~~l~~ 345 (446)
+..+|.+.+......
T Consensus 83 ~~~~~~~~~~~~~~~ 97 (640)
T KOG1474|consen 83 LEKLFPKKLRSMPSD 97 (640)
T ss_pred chhhccccccccccc
Confidence 999998887766554
No 48
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.72 E-value=1.1e-08 Score=112.50 Aligned_cols=76 Identities=21% Similarity=0.292 Sum_probs=69.5
Q ss_pred cCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHH
Q 013304 256 QNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREHKSAFLL 331 (446)
Q Consensus 256 ~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S~v~~aA~~L 331 (446)
.+++.++|..||+...+|+||.||+-||||.|+-+|+..+.|.+.++|..|+.+||.||..||...+.....=..+
T Consensus 300 ~~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~~~~vv 375 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHGLIEFAVI 375 (720)
T ss_pred ccccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchhhhhhhhh
Confidence 4899999999999999999999999999999999999999999999999999999999999999876665443333
No 49
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.71 E-value=2e-08 Score=109.21 Aligned_cols=98 Identities=16% Similarity=0.173 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHHHhcCc------ccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHc
Q 013304 242 DSIDDIKGVFESVAQNE------SAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAV 315 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k------~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~ 315 (446)
.-..+|..||..+..+. ....|.+-.+....|.||.+|-+||.|..|++|+..+.|.+.+.|+.|++||+.||.
T Consensus 52 ~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena~ 131 (629)
T KOG1827|consen 52 PLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENAR 131 (629)
T ss_pred HHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 44677888888888764 355888888888999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHH
Q 013304 316 VFYSKNTREHKSAFLLRTIVLKTM 339 (446)
Q Consensus 316 ~YN~~~S~v~~aA~~L~~~f~k~l 339 (446)
.||.+++.+|+++..|...|....
T Consensus 132 ~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 132 LYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred HhcCcchhhhhhhhhhhcchhhhh
Confidence 999999999999999999887754
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.54 E-value=1.7e-08 Score=103.89 Aligned_cols=96 Identities=21% Similarity=0.201 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCCHHH
Q 013304 246 DIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREH 325 (446)
Q Consensus 246 ~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S~v~ 325 (446)
....++..+-+...-..|..||...-.|+|.+||..|||+.||+.||+-+.|.+..+|..|..||++||..||...+.++
T Consensus 23 ~~ehhlrkl~sKdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~ 102 (418)
T KOG1828|consen 23 DAEHHLRKLPSKDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPI 102 (418)
T ss_pred hHHHHHHhccccChhhhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCcccc
Confidence 34456666777777778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 013304 326 KSAFLLRTIVLKTMRQ 341 (446)
Q Consensus 326 ~aA~~L~~~f~k~l~~ 341 (446)
.+|..|..+....++.
T Consensus 103 ~aaKrL~~v~~~~~qe 118 (418)
T KOG1828|consen 103 VAAKRLCPVRLGMTQE 118 (418)
T ss_pred ccccccchhhcchhhH
Confidence 9999998876655443
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.33 E-value=3.1e-07 Score=94.80 Aligned_cols=89 Identities=13% Similarity=-0.062 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCCH
Q 013304 244 IDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTR 323 (446)
Q Consensus 244 ~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S~ 323 (446)
-..+-....++........|..++....+|.|.-+|++|+|+.|++.|+.+..|.| -+|..|..||+.||++||.+...
T Consensus 210 ~~l~~~q~~kl~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~ 288 (418)
T KOG1828|consen 210 QQLQTLQEDKLNRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKS 288 (418)
T ss_pred HHHHHHHHHHhcccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchH
Confidence 44555566777888889999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHH
Q 013304 324 EHKSAFLLRT 333 (446)
Q Consensus 324 v~~aA~~L~~ 333 (446)
+|..|..+..
T Consensus 289 yyelank~lh 298 (418)
T KOG1828|consen 289 YYELANKQLH 298 (418)
T ss_pred HHHHHHhhhh
Confidence 9999987654
No 52
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.06 E-value=5.3e-06 Score=61.55 Aligned_cols=45 Identities=29% Similarity=0.587 Sum_probs=40.3
Q ss_pred ccchhhHHHHHHHHhhhccCCCchHHHHHHh-hccCCCCCCCHHHHHHHHHHH
Q 013304 7 EVWGTWEELLLGGAVLRHGTRDWNLVAAELR-ARTVCPYTVTPEMCKAHYEDL 58 (446)
Q Consensus 7 ~~wgt~eelll~~av~Rhg~~~w~~va~e~~-~r~~~~~~~t~~~C~~k~~~l 58 (446)
+.|..-|+.+|.-||..||..+|..||..+. +| |+..|+.+|..|
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~R-------t~~qc~~~~~~~ 47 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGR-------TAKQCRSRYQNL 47 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSS-------THHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCC-------CHHHHHHHHHhh
Confidence 5799999999999999999999999999999 66 789999999876
No 53
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.67 E-value=6.2e-05 Score=53.50 Aligned_cols=47 Identities=32% Similarity=0.591 Sum_probs=42.6
Q ss_pred ccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHh
Q 013304 7 EVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQ 60 (446)
Q Consensus 7 ~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~ 60 (446)
..|..-|+-+|..+|..||..+|..||..+..| |+..|+.+|..|.+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~r-------t~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELPGR-------TAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCC-------CHHHHHHHHHHHcC
Confidence 469999999999999999999999999999866 78999999998765
No 54
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.66 E-value=1.3e-05 Score=82.58 Aligned_cols=96 Identities=22% Similarity=0.248 Sum_probs=87.2
Q ss_pred HHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCCHHHH
Q 013304 247 IKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREHK 326 (446)
Q Consensus 247 L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S~v~~ 326 (446)
...++..+..+-.+|+|.+++.....|+|+++|..+||++|.+-++.+++|....+|.+|..++|+||..||+....++.
T Consensus 268 ~~~~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (371)
T COG5076 268 ESVLITNSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYK 347 (371)
T ss_pred hhhcccccccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhh
Confidence 33445555778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 013304 327 SAFLLRTIVLKTMRQY 342 (446)
Q Consensus 327 aA~~L~~~f~k~l~~~ 342 (446)
.+..+..++...+...
T Consensus 348 ~~~~~~~~~~~~~~~~ 363 (371)
T COG5076 348 NANVLEDFVIKKTRLI 363 (371)
T ss_pred hccchhhhHhhhhhhh
Confidence 9999999888776643
No 55
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.38 E-value=0.0003 Score=49.31 Aligned_cols=44 Identities=36% Similarity=0.700 Sum_probs=39.8
Q ss_pred cchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 013304 8 VWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDL 58 (446)
Q Consensus 8 ~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l 58 (446)
.|..-|+-+|..+|..||..+|+.||..+..| |+..|+.+|..|
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~r-------s~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGR-------TPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCC-------CHHHHHHHHHHh
Confidence 48889999999999999999999999999876 779999999765
No 56
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=96.96 E-value=0.0012 Score=59.82 Aligned_cols=64 Identities=14% Similarity=0.224 Sum_probs=55.2
Q ss_pred CCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 013304 282 HMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREHKSAFLLRTIVLKTMRQYFKD 345 (446)
Q Consensus 282 PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S~v~~aA~~L~~~f~k~l~~~l~~ 345 (446)
|-||.-+++||+.|.|+|+.+|.+||..|++=++.--+..-.+-++-..+.-+|.+.|.+.++-
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~W 122 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPW 122 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccc
Confidence 8999999999999999999999999999999888777766666666667778889988887764
No 57
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=96.83 E-value=0.002 Score=49.36 Aligned_cols=48 Identities=31% Similarity=0.635 Sum_probs=38.4
Q ss_pred chhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHH-HHhhhcC
Q 013304 9 WGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYED-LQQRFYG 64 (446)
Q Consensus 9 wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~-l~~r~~~ 64 (446)
|..-|+-+|.-+|..||. +|..||..|..| |+..|+.+|.. |....+.
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~~R-------t~~~~~~r~~~~l~~~~~~ 49 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEHLGNR-------TPKQCRNRWRNHLRPKISR 49 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHHSTTS--------HHHHHHHHHHTTSTTSTS
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHHHCcC-------CHHHHHHHHHHHCcccccC
Confidence 777799999999999995 899999998545 88999999999 8655544
No 58
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=94.09 E-value=0.064 Score=43.68 Aligned_cols=55 Identities=25% Similarity=0.471 Sum_probs=37.2
Q ss_pred cchhhHHHHHHHHhhhcc-------------CCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhcCC
Q 013304 8 VWGTWEELLLGGAVLRHG-------------TRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFYGC 65 (446)
Q Consensus 8 ~wgt~eelll~~av~Rhg-------------~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~~~ 65 (446)
.|..=|-++|.-++.-|. ..-|..||.+|..+- ...|+..|+.||..|.++|-.+
T Consensus 3 ~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G---~~rt~~qc~~Kw~~L~~~Yk~~ 70 (90)
T PF13837_consen 3 NWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHG---YNRTPEQCRNKWKNLKKKYKKI 70 (90)
T ss_dssp SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHHHHHH
Confidence 366666666665555421 136999999999873 3579999999999999999763
No 59
>PLN03212 Transcription repressor MYB5; Provisional
Probab=93.44 E-value=0.079 Score=52.81 Aligned_cols=45 Identities=16% Similarity=0.369 Sum_probs=38.5
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHh-hccCCCCCCCHHHHHHHHHH
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELR-ARTVCPYTVTPEMCKAHYED 57 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~-~r~~~~~~~t~~~C~~k~~~ 57 (446)
...|..-|+-+|..+|.+||..+|..||..+. .| |+..|+.+|..
T Consensus 25 Rg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gR-------T~KQCReRW~N 70 (249)
T PLN03212 25 RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLR-------CGKSCRLRWMN 70 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCC-------CcchHHHHHHH
Confidence 46799999999999999999999999998773 55 66899988863
No 60
>PLN03212 Transcription repressor MYB5; Provisional
Probab=91.81 E-value=0.22 Score=49.68 Aligned_cols=49 Identities=20% Similarity=0.166 Sum_probs=42.0
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhh
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRF 62 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~ 62 (446)
...|..-|+.+|..+|..+|. .|..||..|..| |...|+.+|..+.++.
T Consensus 78 kgpWT~EED~lLlel~~~~Gn-KWs~IAk~LpGR-------TDnqIKNRWns~LrK~ 126 (249)
T PLN03212 78 RGGITSDEEDLILRLHRLLGN-RWSLIAGRIPGR-------TDNEIKNYWNTHLRKK 126 (249)
T ss_pred cCCCChHHHHHHHHHHHhccc-cHHHHHhhcCCC-------CHHHHHHHHHHHHhHH
Confidence 467888899999999999996 599999999999 4589999998776654
No 61
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=91.20 E-value=0.1 Score=60.99 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHHhc--CcccccccCcCCccc-----cchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHH--HHHHHHH
Q 013304 242 DSIDDIKGVFESVAQ--NESAFVFRHRLDSQK-----RGRYKKMILRHMDVDTIRSKISSHSIMSIKELFR--DLLLLAN 312 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~--~k~A~~F~~PVd~~e-----~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~--Dl~Lmf~ 312 (446)
+....|..-+..|.- +.....|..|++... +++|..+|+++||+...-.+++.+.|.++.+|.. ++.|||.
T Consensus 513 V~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~ 592 (1080)
T KOG0732|consen 513 VEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICR 592 (1080)
T ss_pred hhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcC
Confidence 444444444444432 344668999999752 5699999999999999999999999999999999 9999999
Q ss_pred HHcccCCCC
Q 013304 313 NAVVFYSKN 321 (446)
Q Consensus 313 NA~~YN~~~ 321 (446)
|++.||+..
T Consensus 593 ~~lli~~~~ 601 (1080)
T KOG0732|consen 593 PRLLINGGK 601 (1080)
T ss_pred cHHhcCCCc
Confidence 999999976
No 62
>PLN03091 hypothetical protein; Provisional
Probab=91.03 E-value=0.22 Score=53.40 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=31.0
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHh-hccC
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELR-ARTV 41 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~-~r~~ 41 (446)
.+.|..-|+-+|..+|..||..+|..||..+. .|+.
T Consensus 14 Kg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~ 50 (459)
T PLN03091 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCG 50 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCc
Confidence 45799999999999999999999999998774 5643
No 63
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=90.97 E-value=0.15 Score=58.26 Aligned_cols=61 Identities=20% Similarity=0.291 Sum_probs=52.5
Q ss_pred hcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHHHHHHH
Q 013304 279 ILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREHKSAFLLRTIVLKTM 339 (446)
Q Consensus 279 IK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S~v~~aA~~L~~~f~k~l 339 (446)
---|.-|.-|+.+|++.+|++.+.|.+|+..|..||-+|++.+-.+-..+..|...|...+
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tl 1110 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTL 1110 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhc
Confidence 4567889999999999999999999999999999999999998877777777777665543
No 64
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=90.36 E-value=0.3 Score=54.57 Aligned_cols=65 Identities=28% Similarity=0.401 Sum_probs=50.4
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHH-HHhhhcC-CcchhHHHhhhhh
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYED-LQQRFYG-CKSLESKLETLKA 77 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~-l~~r~~~-~~slq~~~~~l~~ 77 (446)
.+.|.|-|+.+|.|||.|+|..+|--|-.|+..|+. ..|+..|.. |++|.-. .=+|+...+-++.
T Consensus 360 hg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSd-------sQcR~RY~nvL~~s~K~~rW~l~edeqL~~~ 426 (939)
T KOG0049|consen 360 HGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSD-------SQCRERYTNVLNRSAKVERWTLVEDEQLLYA 426 (939)
T ss_pred CCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccH-------HHHHHHHHHHHHHhhccCceeecchHHHHHH
Confidence 467999999999999999999999999999999954 799999975 5554422 1166655554444
No 65
>PLN03091 hypothetical protein; Provisional
Probab=89.90 E-value=0.43 Score=51.17 Aligned_cols=49 Identities=22% Similarity=0.258 Sum_probs=43.9
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhh
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRF 62 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~ 62 (446)
.+.|...|+.+|.-.+..||. .|..||..|..| |...||.+|..+.+|+
T Consensus 67 KgpWT~EED~lLLeL~k~~Gn-KWskIAk~LPGR-------TDnqIKNRWnslLKKk 115 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVLGN-RWSQIAAQLPGR-------TDNEIKNLWNSCLKKK 115 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCc-chHHHHHhcCCC-------CHHHHHHHHHHHHHHH
Confidence 468999999999999999997 699999999999 5689999999987776
No 66
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=89.25 E-value=0.48 Score=50.60 Aligned_cols=136 Identities=21% Similarity=0.208 Sum_probs=75.4
Q ss_pred ccccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHH--hhhcCCc--chhHHHhhhhhhcC
Q 013304 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQ--QRFYGCK--SLESKLETLKAERG 80 (446)
Q Consensus 5 ~~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~--~r~~~~~--slq~~~~~l~~ek~ 80 (446)
+...|+--||+||.-|+-=.|++||--||.=|-++ |-+.|+..|.-.= .=+.-.. +++.-+...+....
T Consensus 71 ~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtK-------tkeeck~hy~k~fv~s~~~~~~~i~~~~~~~q~e~~~~ 143 (438)
T KOG0457|consen 71 LDPSWTADEEILLLEAAETYGFGNWQDIADHIGTK-------TKEECKEHYLKHFVNSPIFPLPDISLGIGVNQDEDAAM 143 (438)
T ss_pred CCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHccc-------chHHHHHHHHHHHhcCccccccccccccCcchHHHhhh
Confidence 34679999999999999999999999999988866 6699999997531 1111111 55555555544333
Q ss_pred CCCCcCCCCCCCCCCCCCCCcccccccccccccccCCCCcccccccCCCCCCcccchhchhHHHhhhcccccchhhhh
Q 013304 81 DDCQVDNDCSQTESPVPCQKSDAVVCSSKETSKDGLSAGSFTRETRTHWSPVSQIPAAVAAEEMETKTQGLLSSEQEK 158 (446)
Q Consensus 81 ~~~~~~~~~~~~e~~~~~~~~~~~~~s~ke~sk~~~sags~t~e~~~n~~~e~~~~~~~~~~~~~~kp~~~~~~~q~k 158 (446)
.+.. ....+|..++| .+...-+....|++.--+---+|-+|-.+ .+.-...+|+.+++......+.|
T Consensus 144 ~k~~--~~~~~~~~~~p-r~p~~~~p~~~e~~gyMp~R~dFd~Eydn--------~AE~li~dm~f~e~D~~~d~elK 210 (438)
T KOG0457|consen 144 AKNR--AEPFQPTDLVP-RKPGVSNPLRREISGYMPGRLDFDEEYDN--------EAEQLIRDMEFEEDDTEEDHELK 210 (438)
T ss_pred cccc--cccCCCCCCCC-CCCCCCCchHHHHhhhCccchhhhhhhcc--------hhhhhHhhcccCCCCcHHHHHHH
Confidence 2111 22334544444 11112233333444443333355444332 12223345666666555444443
No 67
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=88.95 E-value=0.35 Score=52.15 Aligned_cols=45 Identities=33% Similarity=0.536 Sum_probs=39.5
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDL 58 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l 58 (446)
...|.-=|.|||.-+|-+.| ++|+.||.-|.++ |+|.|-.+|-.|
T Consensus 279 dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVgtK-------t~EqCIl~FL~L 323 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYG-DDWDKVARHVGTK-------TKEQCILHFLQL 323 (531)
T ss_pred cccccHHHHHHHHHHHHHhh-hhHHHHHHHhCCC-------CHHHHHHHHHcC
Confidence 34788889999999999999 5899999999988 679999999654
No 68
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=87.96 E-value=0.62 Score=45.66 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=52.9
Q ss_pred ccccchhhHHHHHHHHhhhccCCCchHHHHHHh-hccC--C-------------CCCCCHH----------HHHHHHHHH
Q 013304 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELR-ARTV--C-------------PYTVTPE----------MCKAHYEDL 58 (446)
Q Consensus 5 ~~~~wgt~eelll~~av~Rhg~~~w~~va~e~~-~r~~--~-------------~~~~t~~----------~C~~k~~~l 58 (446)
+.+.|..-|+.+|..=|..||..+|..||.-+- .|+. | .-.||++ .=+.||..|
T Consensus 8 ~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~I 87 (238)
T KOG0048|consen 8 VKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSLI 87 (238)
T ss_pred cCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHHH
Confidence 358899999999999999999999999999999 8875 2 4467877 335689999
Q ss_pred HhhhcCCc
Q 013304 59 QQRFYGCK 66 (446)
Q Consensus 59 ~~r~~~~~ 66 (446)
.+++.|.|
T Consensus 88 A~~LPGRT 95 (238)
T KOG0048|consen 88 AGRLPGRT 95 (238)
T ss_pred HhhCCCcC
Confidence 99999987
No 69
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=84.40 E-value=1.1 Score=46.43 Aligned_cols=46 Identities=35% Similarity=0.469 Sum_probs=40.5
Q ss_pred ccccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 013304 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYED 57 (446)
Q Consensus 5 ~~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~ 57 (446)
+-.+||.-|||||.-+.---|-+||.-||.=+-+|+ -+.|+..|-.
T Consensus 62 ~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~-------kee~k~HylK 107 (432)
T COG5114 62 GEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRA-------KEEIKSHYLK 107 (432)
T ss_pred cCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhh-------hHHHHHHHHH
Confidence 357899999999999999999999999999999884 4899988743
No 70
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=82.18 E-value=1.4 Score=48.33 Aligned_cols=49 Identities=33% Similarity=0.523 Sum_probs=42.2
Q ss_pred CCcccccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 013304 2 GAEVIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDL 58 (446)
Q Consensus 2 ~~~~~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l 58 (446)
|..+...|.--|.|||-.||-.|| .+|..||.=|.+| |.+.|-.||-.|
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg~k-------s~eqCI~kFL~L 297 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEMYG-DDWNKVADHVGTK-------SQEQCILKFLRL 297 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccCCC-------CHHHHHHHHHhc
Confidence 445677899999999999999999 5899999988866 679999999654
No 71
>smart00595 MADF subfamily of SANT domain.
Probab=80.53 E-value=1.6 Score=35.62 Aligned_cols=28 Identities=32% Similarity=0.726 Sum_probs=26.3
Q ss_pred CchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhc
Q 013304 28 DWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFY 63 (446)
Q Consensus 28 ~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~ 63 (446)
.|..||.+|.. |++.|+.||..|+.+|.
T Consensus 29 aW~~Ia~~l~~--------~~~~~~~kw~~LR~~y~ 56 (89)
T smart00595 29 AWEEIAEELGL--------SVEECKKRWKNLRDRYR 56 (89)
T ss_pred HHHHHHHHHCc--------CHHHHHHHHHHHHHHHH
Confidence 89999999976 89999999999999996
No 72
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=77.90 E-value=1.7 Score=35.82 Aligned_cols=36 Identities=22% Similarity=0.403 Sum_probs=31.5
Q ss_pred CchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhcCC
Q 013304 28 DWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFYGC 65 (446)
Q Consensus 28 ~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~~~ 65 (446)
.|..|+.++..++ -..+|...|+.||..|++.|..+
T Consensus 33 ~w~~i~~~~~~~~--~~~~t~~qlknk~~~lk~~y~~~ 68 (96)
T PF12776_consen 33 GWNNIAEEFNEKT--GLNYTKKQLKNKWKTLKKDYRIW 68 (96)
T ss_pred HHHHHHHHHHHHh--CCcccHHHHHHHHHHHHHHHHHH
Confidence 4999999999974 45669999999999999999764
No 73
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=71.49 E-value=3.4 Score=39.08 Aligned_cols=50 Identities=26% Similarity=0.478 Sum_probs=38.5
Q ss_pred cccchhhHHHHHHHHhhhcc------CCCchHHHHHHhhccCCCCCCCHHHHHHHHHH-HHhhhc
Q 013304 6 IEVWGTWEELLLGGAVLRHG------TRDWNLVAAELRARTVCPYTVTPEMCKAHYED-LQQRFY 63 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg------~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~-l~~r~~ 63 (446)
+..|..-|+||||..|+||= -++|+-|+..| ..|+..|+-.|+- +..+|-
T Consensus 4 QDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L--------~RTsAACGFRWNs~VRkqY~ 60 (161)
T TIGR02894 4 QDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL--------NRTAAACGFRWNAYVRKQYE 60 (161)
T ss_pred ccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH--------cccHHHhcchHHHHHHHHHH
Confidence 45799999999999999993 25677777544 4588999999975 455774
No 74
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=71.16 E-value=7.4 Score=39.88 Aligned_cols=37 Identities=27% Similarity=0.527 Sum_probs=28.5
Q ss_pred CCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhcCC
Q 013304 26 TRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFYGC 65 (446)
Q Consensus 26 ~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~~~ 65 (446)
...|.-||..+.- .-+..|+..|+.||+.|.+||=.+
T Consensus 83 ~~~We~va~k~~~---~g~~rs~~qck~K~~nl~k~Yk~~ 119 (345)
T KOG4282|consen 83 GPLWEEVARKMAE---LGYPRSPKQCKAKIENLKKKYKKE 119 (345)
T ss_pred ccHHHHHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5679999983332 234559999999999999999653
No 75
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=69.96 E-value=3.1 Score=40.77 Aligned_cols=35 Identities=31% Similarity=0.339 Sum_probs=32.3
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHhhccC
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTV 41 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~ 41 (446)
.+.|+.-||.+|.-|-..||-+ |..||..|..||.
T Consensus 62 rg~fT~eEe~~Ii~lH~~~GNr-Ws~IA~~LPGRTD 96 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHALLGNR-WSLIAGRLPGRTD 96 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHCcH-HHHHHhhCCCcCH
Confidence 3578888999999999999999 9999999999987
No 76
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=65.89 E-value=8.3 Score=31.20 Aligned_cols=27 Identities=33% Similarity=0.324 Sum_probs=24.5
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 013304 286 DTIRSKISSHSIMSIKELFRDLLLLAN 312 (446)
Q Consensus 286 sTIKkKLesg~Y~S~~EF~~Dl~Lmf~ 312 (446)
.-|+..+++|.|.|..|+++|.+.++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999998775
No 77
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=65.68 E-value=16 Score=28.63 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=35.6
Q ss_pred ccchhhHHHHHHHHhhhccCCCc---hHHHHHHhhccCCCCCCCHHHHHHHHH
Q 013304 7 EVWGTWEELLLGGAVLRHGTRDW---NLVAAELRARTVCPYTVTPEMCKAHYE 56 (446)
Q Consensus 7 ~~wgt~eelll~~av~Rhg~~~w---~~va~e~~~r~~~~~~~t~~~C~~k~~ 56 (446)
..|..-|...+..||..+|..+| ..|+..+.. ..+|+++|+..+.
T Consensus 4 ~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~-----~~lT~~qV~SH~Q 51 (57)
T TIGR01557 4 VVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVV-----DGLTRDQVASHLQ 51 (57)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCC-----CCCCHHHHHHHHH
Confidence 46999999999999999999999 888766543 2448888876543
No 78
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=63.83 E-value=15 Score=29.42 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=40.7
Q ss_pred cchhhHHHHHHHHhhhc-----c-----------CCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhh
Q 013304 8 VWGTWEELLLGGAVLRH-----G-----------TRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQR 61 (446)
Q Consensus 8 ~wgt~eelll~~av~Rh-----g-----------~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r 61 (446)
.|..-|..+|..-|..| | ...|..|+.+|-+-.+ ...|+..|+.+|.+|..+
T Consensus 4 ~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~--~~Rs~~~lkkkW~nlk~~ 71 (78)
T PF13873_consen 4 NFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGP--GKRSWKQLKKKWKNLKSK 71 (78)
T ss_pred CCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHH
Confidence 45666777777777776 2 3569999999999654 378999999999999865
No 79
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=62.00 E-value=14 Score=41.98 Aligned_cols=55 Identities=22% Similarity=0.191 Sum_probs=47.7
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhcC
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFYG 64 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~~ 64 (446)
.+.|..=||--|..+|.-+|.++|-.+|++|..||.- ----|+..|..++-|.+.
T Consensus 412 ~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~----q~~rrR~R~~~~k~rl~~ 466 (939)
T KOG0049|consen 412 VERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSR----QLRRRRLRLIAAKLRLAA 466 (939)
T ss_pred cCceeecchHHHHHHHHHHccchHHHHHHHccccchh----HHHHHHHHHHHHHHHHhc
Confidence 4678888999999999999999999999999999761 225799999999999976
No 80
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=61.86 E-value=4.8 Score=46.64 Aligned_cols=83 Identities=12% Similarity=0.096 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCC--------------C---------
Q 013304 242 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSI--------------M--------- 298 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y--------------~--------- 298 (446)
..+..|+.|+.+|. -++|.+..|.|..+..-|.+|+|++..|.+..| .
T Consensus 74 I~kdhll~i~kqlv---------~~~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~ 144 (1113)
T KOG0644|consen 74 IAKDHLLQILKQLV---------PMLDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRG 144 (1113)
T ss_pred cchHHHHHHHHHhc---------cCcCCCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCccccc
Confidence 66778888887754 567888899999999999999999999988766 2
Q ss_pred -CHH------HHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 013304 299 -SIK------ELFRDLLLLANNAVVFYSKNTREHKSAFLLRTI 334 (446)
Q Consensus 299 -S~~------EF~~Dl~Lmf~NA~~YN~~~S~v~~aA~~L~~~ 334 (446)
++. +..+-..+|-.||..|+.|++ +++-+..+.++
T Consensus 145 ~sl~s~~~~~~~h~~a~~i~~at~~~akPgt-mvqkmk~ikrL 186 (1113)
T KOG0644|consen 145 VSLRSIGGGFEIHHRAPSIGCATFSIAKPGT-MVQKMKNIKRL 186 (1113)
T ss_pred ceeccCCcchhhhhcCcccccceeeecCcHH-HHHHHHHHHHH
Confidence 233 477888999999999999999 55555555443
No 81
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=58.14 E-value=10 Score=41.80 Aligned_cols=48 Identities=31% Similarity=0.572 Sum_probs=42.1
Q ss_pred cccccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 013304 4 EVIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDL 58 (446)
Q Consensus 4 ~~~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l 58 (446)
-.++.|-.=||-+|-.||.-.|+.-|.-|+..|... |+-.|++.|++.
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~k-------t~rqC~~rw~e~ 52 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRK-------TARQCKARWEEW 52 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhc-------chhHHHHHHHHH
Confidence 456789888999999999999999999999888766 779999999853
No 82
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=51.84 E-value=1.9 Score=48.22 Aligned_cols=72 Identities=10% Similarity=-0.059 Sum_probs=65.5
Q ss_pred cccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHH
Q 013304 262 VFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREHKSAFLLRT 333 (446)
Q Consensus 262 ~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S~v~~aA~~L~~ 333 (446)
.|..-++-+..+.|+.+++-||-++...+++..+.|.-...|..|+.++|.|+..|+....-++..+..|.+
T Consensus 215 r~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~ 286 (629)
T KOG1827|consen 215 RLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSE 286 (629)
T ss_pred ccccCcccccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccc
Confidence 445555667899999999999999999999999999999999999999999999999999999999888765
No 83
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=51.11 E-value=19 Score=30.04 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=22.5
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 013304 286 DTIRSKISSHSIMSIKELFRDLLLLAN 312 (446)
Q Consensus 286 sTIKkKLesg~Y~S~~EF~~Dl~Lmf~ 312 (446)
.-|+.++.+|.|.|..|+++|...++.
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~aLRlle 41 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREALRLLE 41 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999999777664
No 84
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=50.21 E-value=24 Score=33.72 Aligned_cols=55 Identities=20% Similarity=0.296 Sum_probs=37.1
Q ss_pred ccccchhhHHHHHHHHhhhccCCCchHHHH-HHhhccCCCCCCCHHHHHHHHH-HHHhhh
Q 013304 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAA-ELRARTVCPYTVTPEMCKAHYE-DLQQRF 62 (446)
Q Consensus 5 ~~~~wgt~eelll~~av~Rhg~~~w~~va~-e~~~r~~~~~~~t~~~C~~k~~-~l~~r~ 62 (446)
-+..|..-+++||+..|+||+...=.-+++ |.-+. -...|+..|+..|+ -|..+|
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~---~L~rt~aac~fRwNs~vrk~Y 60 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGD---ALKRTAAACGFRWNSVVRKQY 60 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHH---HHhhhHHHHHhHHHHHHHHHH
Confidence 356899999999999999999765333322 11111 22448899999994 445566
No 85
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=46.71 E-value=24 Score=27.76 Aligned_cols=31 Identities=26% Similarity=0.646 Sum_probs=26.1
Q ss_pred CCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhc
Q 013304 27 RDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFY 63 (446)
Q Consensus 27 ~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~ 63 (446)
..|..||.++... ++++.|+.++..|..+|.
T Consensus 27 ~aw~~Ia~~l~~~------~~~~~~~~~w~~Lr~~y~ 57 (85)
T PF10545_consen 27 EAWQEIARELGKE------FSVDDCKKRWKNLRDRYR 57 (85)
T ss_pred HHHHHHHHHHccc------hhHHHHHHHHHHHHHHHH
Confidence 4699999999543 458899999999999996
No 86
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=35.38 E-value=1.1e+02 Score=26.30 Aligned_cols=58 Identities=12% Similarity=0.317 Sum_probs=44.3
Q ss_pred ccccchhhHHHHHHHHhh----hccC---CCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhcC
Q 013304 5 VIEVWGTWEELLLGGAVL----RHGT---RDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFYG 64 (446)
Q Consensus 5 ~~~~wgt~eelll~~av~----Rhg~---~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~~ 64 (446)
++-.|+.-+|++|.-+++ .||. .+|+.+-.-|+..- ..-+|..+=..|..-|++||-.
T Consensus 3 ~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l--~~~~s~~Ql~~KirrLK~Ky~~ 67 (98)
T PF04504_consen 3 FQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSL--SFDVSKNQLYDKIRRLKKKYRN 67 (98)
T ss_pred CcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHc--cCCCCHHHHHHHHHHHHHHHHH
Confidence 456799999999988886 4585 47777776666653 3446888888999999999964
No 87
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=29.85 E-value=52 Score=29.51 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=28.5
Q ss_pred ccchhhHHHHHHHHhhhccC---CCchHHHHHHhhcc
Q 013304 7 EVWGTWEELLLGGAVLRHGT---RDWNLVAAELRART 40 (446)
Q Consensus 7 ~~wgt~eelll~~av~Rhg~---~~w~~va~e~~~r~ 40 (446)
-.|..-|+=.|.|.|.+||. +.|+.|-.|++.--
T Consensus 50 k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p 86 (118)
T PF09111_consen 50 KVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESP 86 (118)
T ss_dssp SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-C
T ss_pred CCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCC
Confidence 45667799999999999999 99999999998763
No 88
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=28.35 E-value=2.1e+02 Score=24.46 Aligned_cols=49 Identities=8% Similarity=0.039 Sum_probs=40.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013304 294 SHSIMSIKELFRDLLLLANNAVVFYSKNTREHKSAFLLRTIVLKTMRQY 342 (446)
Q Consensus 294 sg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S~v~~aA~~L~~~f~k~l~~~ 342 (446)
...|-|..-|+..|..|-.....++..+..+..||..|++-|.+.+.+.
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~ 51 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDC 51 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888888888888877777777778889999999999999988743
No 89
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=26.37 E-value=34 Score=28.60 Aligned_cols=14 Identities=43% Similarity=0.589 Sum_probs=12.6
Q ss_pred cccccchhhHHHHH
Q 013304 4 EVIEVWGTWEELLL 17 (446)
Q Consensus 4 ~~~~~wgt~eelll 17 (446)
+|.++|-|++|+|+
T Consensus 51 RVGGGW~tL~~fL~ 64 (73)
T smart00243 51 RVGGGWETLDEYLL 64 (73)
T ss_pred EECCcHHHHHHHHH
Confidence 68899999999986
No 90
>PF02187 GAS2: Growth-Arrest-Specific Protein 2 Domain; InterPro: IPR003108 The growth-arrest-specific protein 2 domain is found associated with the spectrin repeat, calponin homology domain and EF hand in many proteins. It is found among others in the growth arrest-specific protein 2 [].; GO: 0007050 cell cycle arrest; PDB: 1V5R_A.
Probab=25.90 E-value=31 Score=28.74 Aligned_cols=15 Identities=40% Similarity=0.388 Sum_probs=12.9
Q ss_pred cccccchhhHHHHHH
Q 013304 4 EVIEVWGTWEELLLG 18 (446)
Q Consensus 4 ~~~~~wgt~eelll~ 18 (446)
+|.++|.|+||+|.-
T Consensus 51 RVGGGW~tL~~~L~k 65 (73)
T PF02187_consen 51 RVGGGWDTLEEYLDK 65 (73)
T ss_dssp EETTEEEEHHHHHHH
T ss_pred EeCCcHHHHHHHhhc
Confidence 678999999999963
No 91
>KOG2359 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.50 E-value=42 Score=37.48 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=33.1
Q ss_pred HHHHhhhccCCCchHHHHHH-----hhccCCCCCCCHHHHHHHHHHHHhhhcC
Q 013304 17 LGGAVLRHGTRDWNLVAAEL-----RARTVCPYTVTPEMCKAHYEDLQQRFYG 64 (446)
Q Consensus 17 l~~av~Rhg~~~w~~va~e~-----~~r~~~~~~~t~~~C~~k~~~l~~r~~~ 64 (446)
+-++.-=||+.||+..+++- ..| --.-.++-+|.+-|++|+||-..
T Consensus 427 ~~~~~~~~p~~D~~ie~~~~~~~ae~~r--~~~e~~a~~~~~S~E~L~R~~~~ 477 (688)
T KOG2359|consen 427 WRSAARINPIKDWKIESLRTAILAEKKR--RIKEKTAKIREASIENLQRKRTA 477 (688)
T ss_pred ccchhhhcCcchhhcccccccccccCcc--hhhhcccchHHHHHHHHHHHHHH
Confidence 34566679999999876542 222 22234888999999999999754
No 92
>PF07882 Fucose_iso_N2: L-fucose isomerase, second N-terminal domain; InterPro: IPR012889 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta- sheets with surrounding alpha helices. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=23.47 E-value=73 Score=30.84 Aligned_cols=56 Identities=18% Similarity=0.158 Sum_probs=39.1
Q ss_pred CCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCCH
Q 013304 267 LDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTR 323 (446)
Q Consensus 267 Vd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S~ 323 (446)
||.+-..+|.-|=-..+|..-|.+|++.+.|.. +||.+=+.-+=.||..|.....+
T Consensus 18 vd~~f~~~ylGmr~E~VD~~Ei~RR~e~~iyD~-~E~e~A~~W~~~~~~~g~d~npe 73 (181)
T PF07882_consen 18 VDPDFFQEYLGMRVEYVDMSEIIRRMEEGIYDE-EEFEKALAWVKENCKEGDDKNPE 73 (181)
T ss_dssp --HHHHHHCT--EEEEE-THHHHHHHHCT-S-H-HHHHHHHHHHHHHSEE---TSTG
T ss_pred cCHHHHHHHhCCCceeecHHHHHHHHHccCCCH-HHHHHHHHHHHHhCCcCCCCCch
Confidence 455555667778888899999999999998866 89999999999999988876533
No 93
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=21.65 E-value=46 Score=25.72 Aligned_cols=12 Identities=42% Similarity=1.030 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHh
Q 013304 49 EMCKAHYEDLQQ 60 (446)
Q Consensus 49 ~~C~~k~~~l~~ 60 (446)
|+|+.||.+|..
T Consensus 9 E~Cr~kfd~l~~ 20 (49)
T smart00586 9 ENCREKYDDLET 20 (49)
T ss_pred ccHhHHHhhHHH
Confidence 799999999975
No 94
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=20.48 E-value=68 Score=28.39 Aligned_cols=19 Identities=26% Similarity=0.600 Sum_probs=14.0
Q ss_pred HHHHHHhhhcCCc-------chhHHH
Q 013304 54 HYEDLQQRFYGCK-------SLESKL 72 (446)
Q Consensus 54 k~~~l~~r~~~~~-------slq~~~ 72 (446)
-|.||++||+-.+ -+|.+|
T Consensus 10 ~l~DL~~rYs~L~s~lkKfkq~q~~I 35 (107)
T PRK15365 10 EYRDLEQSYMQLNHCLKKFHQIRAKV 35 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999632 456666
Done!