Query 013304
Match_columns 446
No_of_seqs 185 out of 1167
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 08:04:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g0l_A Hwalp4, bromodomain adj 100.0 6.6E-28 2.3E-32 207.9 14.6 104 242-345 13-116 (117)
2 3d7c_A General control of amin 100.0 4.3E-28 1.5E-32 207.9 12.8 101 242-342 7-107 (112)
3 3nxb_A CAT eye syndrome critic 99.9 8.9E-28 3E-32 206.9 11.8 101 242-342 16-116 (116)
4 3q2e_A Bromodomain and WD repe 99.9 1.4E-27 4.7E-32 208.0 13.0 106 241-346 9-115 (123)
5 3mb3_A PH-interacting protein; 99.9 1.3E-27 4.3E-32 211.1 12.9 104 242-345 21-125 (135)
6 2dat_A Possible global transcr 99.9 1.8E-27 6.2E-32 207.5 12.9 102 241-342 12-119 (123)
7 1e6i_A Transcriptional activat 99.9 1.8E-27 6.3E-32 207.1 12.3 101 242-342 13-113 (121)
8 2i7k_A Bromodomain-containing 99.9 2.6E-27 9E-32 205.5 12.9 104 242-345 8-111 (117)
9 2d9e_A Peregrin; four-helix bu 99.9 2.2E-27 7.7E-32 206.7 12.3 104 242-345 7-110 (121)
10 3mb4_A Protein polybromo-1; PB 99.9 3.6E-27 1.2E-31 205.7 12.9 104 240-343 13-122 (124)
11 3p1f_A CREB-binding protein; s 99.9 3.9E-27 1.3E-31 203.7 12.4 105 241-345 10-117 (119)
12 2yyn_A Transcription intermedi 99.9 6.1E-27 2.1E-31 207.5 13.0 105 241-346 19-125 (135)
13 2oss_A HUNK1 protein, bromodom 99.9 4.2E-27 1.4E-31 206.6 11.8 102 241-342 20-123 (127)
14 2ouo_A HUNK1 protein, bromodom 99.9 3.9E-27 1.3E-31 207.5 11.6 101 242-342 22-127 (130)
15 3iu5_A Protein polybromo-1; PB 99.9 7.5E-27 2.6E-31 201.3 12.6 104 242-345 5-114 (116)
16 2grc_A Probable global transcr 99.9 1.2E-26 3.9E-31 204.1 12.8 105 241-345 10-121 (129)
17 3hme_A Bromodomain-containing 99.9 8.4E-27 2.9E-31 203.5 11.7 101 242-342 13-113 (123)
18 3ljw_A Protein polybromo-1; al 99.9 1.2E-26 4E-31 201.4 12.5 102 241-342 7-114 (120)
19 3rcw_A Bromodomain-containing 99.9 1.2E-26 4.3E-31 204.7 12.6 104 242-345 13-116 (135)
20 3jvl_A Bromodomain-containing 99.9 6.5E-27 2.2E-31 202.5 10.5 102 242-343 9-115 (120)
21 3mqm_A Probable histone-lysine 99.9 1.4E-26 4.6E-31 202.3 12.2 104 242-345 9-118 (126)
22 4alg_A Bromodomain-containing 99.9 1.3E-26 4.6E-31 209.7 12.4 103 242-344 32-136 (154)
23 3fkm_X Signaling protein; brom 99.9 1.7E-26 5.8E-31 211.4 12.2 103 240-342 19-123 (166)
24 3k2j_A Protein polybromo-1; PB 99.9 3.2E-26 1.1E-30 202.0 12.9 105 241-345 16-126 (130)
25 2ri7_A Nucleosome-remodeling f 99.9 3.6E-26 1.2E-30 208.3 11.2 102 240-341 70-171 (174)
26 3tlp_A Protein polybromo-1; PB 99.9 5.5E-26 1.9E-30 203.9 10.8 104 242-345 24-134 (150)
27 3uv4_A Second bromodomain of h 99.9 1.4E-25 4.9E-30 204.0 12.0 103 242-344 29-132 (158)
28 3o36_A Transcription intermedi 99.9 2.2E-25 7.6E-30 205.4 12.7 105 239-344 78-184 (184)
29 3dai_A ATPase family AAA domai 99.9 4.2E-25 1.4E-29 194.2 13.2 101 242-342 10-114 (130)
30 3u5n_A E3 ubiquitin-protein li 99.9 3.2E-24 1.1E-28 201.4 12.8 108 238-346 77-204 (207)
31 2dkw_A Hypothetical protein KI 99.9 2.9E-24 9.9E-29 190.0 10.4 101 240-345 10-114 (131)
32 3uv5_A Transcription initiatio 99.9 6.3E-24 2.2E-28 206.4 12.6 102 242-343 14-115 (265)
33 2ro1_A Transcription intermedi 99.9 3.9E-24 1.3E-28 199.3 9.8 101 242-347 76-181 (189)
34 3uv5_A Transcription initiatio 99.9 3.7E-23 1.3E-27 201.0 12.4 103 242-344 136-239 (265)
35 3aad_A Transcription initiatio 99.9 3.6E-23 1.2E-27 204.0 9.5 100 242-341 47-146 (292)
36 3aad_A Transcription initiatio 99.9 1.9E-22 6.4E-27 198.9 11.6 91 253-343 181-271 (292)
37 2r0y_A Chromatin structure-rem 99.9 2.3E-22 7.9E-27 200.3 12.1 87 256-342 177-263 (311)
38 2r10_A Chromatin structure-rem 99.9 2.8E-22 9.4E-27 203.0 10.3 87 256-342 227-313 (361)
39 2r10_A Chromatin structure-rem 99.8 2E-20 7E-25 189.4 9.5 99 242-342 78-179 (361)
40 2r0y_A Chromatin structure-rem 99.8 2.8E-20 9.6E-25 185.3 10.1 99 242-342 28-129 (311)
41 3iu6_A Protein polybromo-1; PB 99.7 3.6E-17 1.2E-21 147.8 12.1 101 242-346 7-113 (147)
42 3lqh_A Histone-lysine N-methyl 99.6 1.4E-15 4.8E-20 141.7 9.5 92 244-346 77-168 (183)
43 2elk_A SPCC24B10.08C protein; 98.0 7.3E-06 2.5E-10 62.5 5.2 46 6-58 9-55 (58)
44 1x41_A Transcriptional adaptor 97.8 2.5E-05 8.5E-10 59.8 5.4 47 5-58 7-53 (60)
45 1w0t_A Telomeric repeat bindin 97.8 2.1E-05 7.1E-10 58.6 4.7 47 7-60 3-51 (53)
46 3sjm_A Telomeric repeat-bindin 97.7 3.7E-05 1.3E-09 60.0 4.9 50 6-60 11-60 (64)
47 1guu_A C-MYB, MYB proto-oncoge 97.7 4E-05 1.4E-09 56.6 4.5 46 6-58 3-48 (52)
48 2d9a_A B-MYB, MYB-related prot 97.5 7.4E-05 2.5E-09 56.8 4.2 47 5-58 7-53 (60)
49 2yus_A SWI/SNF-related matrix- 97.5 5.2E-05 1.8E-09 61.6 3.4 46 5-58 17-62 (79)
50 1gvd_A MYB proto-oncogene prot 97.5 7.3E-05 2.5E-09 55.3 3.4 45 6-57 3-47 (52)
51 1ity_A TRF1; helix-turn-helix, 97.4 0.00015 5.2E-09 56.7 4.9 50 5-61 9-60 (69)
52 2dim_A Cell division cycle 5-l 97.3 0.00022 7.6E-09 55.8 4.6 45 6-57 9-53 (70)
53 2cu7_A KIAA1915 protein; nucle 97.2 0.00048 1.6E-08 54.3 5.4 50 6-63 9-58 (72)
54 2ckx_A NGTRF1, telomere bindin 97.0 0.00075 2.6E-08 55.4 5.2 52 8-62 2-53 (83)
55 2llk_A Cyclin-D-binding MYB-li 96.9 0.00055 1.9E-08 54.9 3.5 48 6-62 23-70 (73)
56 2k9n_A MYB24; R2R3 domain, DNA 96.9 0.0012 4.1E-08 55.5 5.4 50 6-63 53-102 (107)
57 2din_A Cell division cycle 5-l 96.9 0.0014 4.9E-08 50.6 5.3 47 6-61 9-55 (66)
58 2k9n_A MYB24; R2R3 domain, DNA 96.9 0.0011 3.7E-08 55.8 5.0 44 7-57 2-45 (107)
59 2yum_A ZZZ3 protein, zinc fing 96.8 0.001 3.5E-08 52.6 4.4 48 5-59 7-59 (75)
60 3zqc_A MYB3; transcription-DNA 96.7 0.0008 2.7E-08 58.6 3.4 46 5-57 1-46 (131)
61 2cqr_A RSGI RUH-043, DNAJ homo 96.7 0.00055 1.9E-08 54.9 1.9 50 6-62 18-70 (73)
62 3osg_A MYB21; transcription-DN 96.7 0.0014 4.7E-08 56.7 4.4 51 6-64 62-112 (126)
63 1gv2_A C-MYB, MYB proto-oncoge 96.7 0.0011 3.7E-08 55.3 3.5 48 6-61 56-103 (105)
64 2ltp_A Nuclear receptor corepr 95.7 0.0003 1E-08 58.0 0.0 51 5-63 15-65 (89)
65 1gv2_A C-MYB, MYB proto-oncoge 96.6 0.0013 4.3E-08 54.8 3.6 46 5-57 3-48 (105)
66 1h89_C C-MYB, MYB proto-oncoge 96.6 0.00047 1.6E-08 61.7 0.8 49 1-56 1-49 (159)
67 2roh_A RTBP1, telomere binding 96.4 0.0037 1.3E-07 54.8 5.4 55 5-62 30-84 (122)
68 3osg_A MYB21; transcription-DN 96.4 0.0026 9E-08 55.0 4.3 44 6-57 11-54 (126)
69 2cjj_A Radialis; plant develop 96.4 0.0034 1.2E-07 52.5 4.8 51 5-62 7-60 (93)
70 2iw5_B Protein corest, REST co 96.3 0.0037 1.3E-07 60.2 5.3 64 5-80 132-195 (235)
71 2aje_A Telomere repeat-binding 96.3 0.0026 9E-08 54.4 3.8 55 6-63 13-67 (105)
72 1h8a_C AMV V-MYB, MYB transfor 96.3 0.0031 1.1E-07 54.5 4.2 46 5-57 26-71 (128)
73 2juh_A Telomere binding protei 96.2 0.0044 1.5E-07 54.2 4.6 54 5-61 16-69 (121)
74 1h8a_C AMV V-MYB, MYB transfor 95.9 0.0031 1E-07 54.5 2.3 48 6-61 79-126 (128)
75 1wgx_A KIAA1903 protein; MYB D 95.8 0.0062 2.1E-07 49.0 3.7 54 3-63 5-61 (73)
76 2cqq_A RSGI RUH-037, DNAJ homo 95.6 0.019 6.4E-07 45.8 5.4 50 5-62 7-59 (72)
77 2eqr_A N-COR1, N-COR, nuclear 95.5 0.014 4.7E-07 44.7 4.3 48 4-59 10-57 (61)
78 1h89_C C-MYB, MYB proto-oncoge 95.5 0.0098 3.3E-07 53.0 4.0 45 6-57 58-102 (159)
79 3zqc_A MYB3; transcription-DNA 95.4 0.0079 2.7E-07 52.2 3.0 49 6-62 54-102 (131)
80 2ebi_A DNA binding protein GT- 94.3 0.027 9.4E-07 45.4 3.3 55 7-64 5-68 (86)
81 2xag_B REST corepressor 1; ami 92.3 0.13 4.4E-06 54.3 5.3 64 6-81 380-443 (482)
82 1ign_A Protein (RAP1); RAP1,ye 85.5 0.38 1.3E-05 46.6 2.6 47 6-59 8-59 (246)
83 1x58_A Hypothetical protein 49 78.4 1.9 6.5E-05 33.6 3.7 54 4-62 6-59 (62)
84 2yqk_A Arginine-glutamic acid 77.4 2.6 8.9E-05 32.2 4.2 46 6-59 9-55 (63)
85 2crg_A Metastasis associated p 68.2 5 0.00017 31.4 3.9 49 4-60 6-55 (70)
86 4b4c_A Chromodomain-helicase-D 67.1 3.2 0.00011 38.0 3.0 31 8-38 136-166 (211)
87 4a69_C Nuclear receptor corepr 59.2 8.3 0.00028 31.8 3.8 44 5-56 42-85 (94)
88 2xb0_X Chromo domain-containin 53.0 7 0.00024 38.2 2.8 27 8-34 170-196 (270)
89 1ofc_X ISWI protein; nuclear p 52.9 9.4 0.00032 38.0 3.7 50 7-63 108-160 (304)
90 4eef_G F-HB80.4, designed hema 40.4 6.4 0.00022 31.7 0.2 44 6-56 20-66 (74)
91 3kxe_C Antitoxin protein PARD- 34.0 35 0.0012 27.8 3.7 28 286-313 16-43 (88)
92 4b4c_A Chromodomain-helicase-D 24.4 95 0.0032 28.0 5.2 53 5-62 6-60 (211)
No 1
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.95 E-value=6.6e-28 Score=207.94 Aligned_cols=104 Identities=22% Similarity=0.292 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCC
Q 013304 242 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 321 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~ 321 (446)
...+.|..||+.|..|+.+++|..||+...+|+||++|++||||+||++||++|.|.++++|.+||+|||.||+.||+++
T Consensus 13 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 92 (117)
T 3g0l_A 13 KDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDD 92 (117)
T ss_dssp THHHHHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhc
Q 013304 322 TREHKSAFLLRTIVLKTMRQYFKD 345 (446)
Q Consensus 322 S~v~~aA~~L~~~f~k~l~~~l~~ 345 (446)
|.+|.+|..|+++|++.|.+.+..
T Consensus 93 s~~~~~A~~L~~~f~~~~~~~~~~ 116 (117)
T 3g0l_A 93 SDIGRAGHNMRKYFEKKWTDTFKV 116 (117)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999988754
No 2
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.95 E-value=4.3e-28 Score=207.88 Aligned_cols=101 Identities=15% Similarity=0.231 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCC
Q 013304 242 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 321 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~ 321 (446)
.+...|..||+.|..|+.+++|..||+...+|+||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||+++
T Consensus 7 ~l~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 86 (112)
T 3d7c_A 7 QLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPD 86 (112)
T ss_dssp HHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCCCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 013304 322 TREHKSAFLLRTIVLKTMRQY 342 (446)
Q Consensus 322 S~v~~aA~~L~~~f~k~l~~~ 342 (446)
|.+|.+|..|++.|.+.|++.
T Consensus 87 s~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 87 SEYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp SHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999998863
No 3
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.95 E-value=8.9e-28 Score=206.86 Aligned_cols=101 Identities=16% Similarity=0.254 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCC
Q 013304 242 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 321 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~ 321 (446)
.+.+.|..||+.|..++.+++|..||+...+|+||++|++||||+||++||++|.|.++++|..||+|||.||+.||+++
T Consensus 16 ~~~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 95 (116)
T 3nxb_A 16 DDFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGES 95 (116)
T ss_dssp CHHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 013304 322 TREHKSAFLLRTIVLKTMRQY 342 (446)
Q Consensus 322 S~v~~aA~~L~~~f~k~l~~~ 342 (446)
|.+|.+|..|+++|.+.|.++
T Consensus 96 s~~~~~A~~L~~~f~~~~~kh 116 (116)
T 3nxb_A 96 SEYTKMSDNLERCFHRAMMKH 116 (116)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999998753
No 4
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.95 E-value=1.4e-27 Score=208.05 Aligned_cols=106 Identities=20% Similarity=0.259 Sum_probs=102.2
Q ss_pred hhhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCC
Q 013304 241 KDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSK 320 (446)
Q Consensus 241 ~~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~ 320 (446)
..|++.|..||+.|..|+.+++|..||+...+|+||++|++||||+||++||++|.|.++++|..||+|||.||+.||++
T Consensus 9 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 88 (123)
T 3q2e_A 9 SNWKKQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPN 88 (123)
T ss_dssp -CHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHhhcC
Q 013304 321 -NTREHKSAFLLRTIVLKTMRQYFKDN 346 (446)
Q Consensus 321 -~S~v~~aA~~L~~~f~k~l~~~l~~~ 346 (446)
+|.+|.+|..|+++|.+.|++++++.
T Consensus 89 ~~s~i~~~A~~L~~~f~~~~~~~~~~~ 115 (123)
T 3q2e_A 89 KRSKIYSMTLRLSALFEEKMKKISSDF 115 (123)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988763
No 5
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=211.10 Aligned_cols=104 Identities=19% Similarity=0.261 Sum_probs=101.8
Q ss_pred hhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCC-
Q 013304 242 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSK- 320 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~- 320 (446)
.|.+.|..||+.|..++.+++|..||+...+||||++|++||||+||++||++|.|.++++|..||.|||.||+.||++
T Consensus 21 ~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 100 (135)
T 3mb3_A 21 AWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSK 100 (135)
T ss_dssp THHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCT
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhc
Q 013304 321 NTREHKSAFLLRTIVLKTMRQYFKD 345 (446)
Q Consensus 321 ~S~v~~aA~~L~~~f~k~l~~~l~~ 345 (446)
+|.+|.+|..|+++|.+.|.+.+++
T Consensus 101 ~s~i~~~A~~L~~~f~~~~~~~~~~ 125 (135)
T 3mb3_A 101 RSRIYSMSLRLSAFFEEHISSVLSD 125 (135)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998876
No 6
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=207.45 Aligned_cols=102 Identities=18% Similarity=0.322 Sum_probs=97.9
Q ss_pred hhhHHHHHHHHHHHhcCc------ccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 013304 241 KDSIDDIKGVFESVAQNE------SAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNA 314 (446)
Q Consensus 241 ~~~~k~L~~IL~~L~~~k------~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA 314 (446)
..+.+.|..||+.|+.++ .+++|..||+..++|+||++|++||||+||++||++|.|.++++|.+||+|||+||
T Consensus 12 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 91 (123)
T 2dat_A 12 PKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNA 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 488999999999999987 69999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013304 315 VVFYSKNTREHKSAFLLRTIVLKTMRQY 342 (446)
Q Consensus 315 ~~YN~~~S~v~~aA~~L~~~f~k~l~~~ 342 (446)
+.||++++.+|.+|..|+++|.+.+++.
T Consensus 92 ~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 92 QTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999998864
No 7
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.95 E-value=1.8e-27 Score=207.08 Aligned_cols=101 Identities=19% Similarity=0.294 Sum_probs=97.9
Q ss_pred hhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCC
Q 013304 242 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 321 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~ 321 (446)
...+.|..||+.|..|+.+++|..||+...+|+||++|++||||+||++||++|.|.++.+|.+||+|||+||+.||+++
T Consensus 13 ~~~~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 92 (121)
T 1e6i_A 13 PHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGEN 92 (121)
T ss_dssp TTHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 013304 322 TREHKSAFLLRTIVLKTMRQY 342 (446)
Q Consensus 322 S~v~~aA~~L~~~f~k~l~~~ 342 (446)
|.+|.+|..|+++|.+.|.++
T Consensus 93 s~i~~~A~~L~~~f~~~~~~~ 113 (121)
T 1e6i_A 93 TSYYKYANRLEKFFNNKVKEI 113 (121)
T ss_dssp SHHHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999864
No 8
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.95 E-value=2.6e-27 Score=205.52 Aligned_cols=104 Identities=20% Similarity=0.262 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCC
Q 013304 242 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 321 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~ 321 (446)
...+.|..||+.|++++.+++|..||+...+|+||+||++||||+||++||++|.|.++++|.+||+|||.||+.||+++
T Consensus 8 ~l~~~l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~ 87 (117)
T 2i7k_A 8 PLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPE 87 (117)
T ss_dssp HHHHHHHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhc
Q 013304 322 TREHKSAFLLRTIVLKTMRQYFKD 345 (446)
Q Consensus 322 S~v~~aA~~L~~~f~k~l~~~l~~ 345 (446)
|.+|.+|..|++.|.+.+...+-.
T Consensus 88 s~i~~~A~~L~~~f~~~~~~~~~~ 111 (117)
T 2i7k_A 88 TIYYKAAKKLLHSGMKILSQERLE 111 (117)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887654
No 9
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.94 E-value=2.2e-27 Score=206.72 Aligned_cols=104 Identities=16% Similarity=0.240 Sum_probs=99.1
Q ss_pred hhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCC
Q 013304 242 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 321 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~ 321 (446)
.+...|..||+.|+.++.+++|..||+...+|+||++|++||||+||++||++|.|.++.+|.+||+|||+||++||+++
T Consensus 7 pl~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 86 (121)
T 2d9e_A 7 GFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKD 86 (121)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhc
Q 013304 322 TREHKSAFLLRTIVLKTMRQYFKD 345 (446)
Q Consensus 322 S~v~~aA~~L~~~f~k~l~~~l~~ 345 (446)
|.+|.+|..|++.|.+.|.+....
T Consensus 87 s~~~~~A~~L~~~~~~~l~~~~~~ 110 (121)
T 2d9e_A 87 TIFYRAAVRLREQGGAVLRQARRQ 110 (121)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888765443
No 10
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.94 E-value=3.6e-27 Score=205.69 Aligned_cols=104 Identities=21% Similarity=0.334 Sum_probs=98.8
Q ss_pred ChhhHHHHHHHHHHHhc------CcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 013304 240 RKDSIDDIKGVFESVAQ------NESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANN 313 (446)
Q Consensus 240 ~~~~~k~L~~IL~~L~~------~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~N 313 (446)
...+.+.|..||+.|.. |+.+++|..||+..++|+||++|++||||+||++||++|.|.++++|..||+|||.|
T Consensus 13 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~N 92 (124)
T 3mb4_A 13 MTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNN 92 (124)
T ss_dssp CCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 34889999999999998 666899999999999999999999999999999999999999999999999999999
Q ss_pred HcccCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 013304 314 AVVFYSKNTREHKSAFLLRTIVLKTMRQYF 343 (446)
Q Consensus 314 A~~YN~~~S~v~~aA~~L~~~f~k~l~~~l 343 (446)
|+.||+++|.+|.+|..|+++|.+.+++..
T Consensus 93 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 93 ACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998753
No 11
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.94 E-value=3.9e-27 Score=203.70 Aligned_cols=105 Identities=19% Similarity=0.288 Sum_probs=99.8
Q ss_pred hhhHHHHHHHHHHHhc-CcccccccCcCCcc--ccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHccc
Q 013304 241 KDSIDDIKGVFESVAQ-NESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVF 317 (446)
Q Consensus 241 ~~~~k~L~~IL~~L~~-~k~A~~F~~PVd~~--e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~Y 317 (446)
....+.|..+|..|.. ++.+++|..||+.. ++|+||++|++||||+||++||++|.|.++++|.+||+|||+||+.|
T Consensus 10 ~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 89 (119)
T 3p1f_A 10 EELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLY 89 (119)
T ss_dssp HHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3678899999999988 78999999999998 79999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 013304 318 YSKNTREHKSAFLLRTIVLKTMRQYFKD 345 (446)
Q Consensus 318 N~~~S~v~~aA~~L~~~f~k~l~~~l~~ 345 (446)
|+++|.+|.+|..|+++|.+.+.+.+..
T Consensus 90 N~~~s~i~~~A~~L~~~f~~~~~~~~~~ 117 (119)
T 3p1f_A 90 NRKTSRVYKFCSKLAEVFEQEIDPVMQS 117 (119)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999987754
No 12
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.94 E-value=6.1e-27 Score=207.50 Aligned_cols=105 Identities=13% Similarity=0.232 Sum_probs=100.6
Q ss_pred hhhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhc--CCCCCHHHHHHHHHHHHHHHcccC
Q 013304 241 KDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISS--HSIMSIKELFRDLLLLANNAVVFY 318 (446)
Q Consensus 241 ~~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLes--g~Y~S~~EF~~Dl~Lmf~NA~~YN 318 (446)
..+.+.|..||..|+.|+.+++|..||+. .+|+||+||++||||+||++||++ |.|.++++|.+||+|||+||++||
T Consensus 19 p~~~~~c~~il~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN 97 (135)
T 2yyn_A 19 PIDKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFN 97 (135)
T ss_dssp HHHHHHHHHHHHHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 36788999999999999999999999998 799999999999999999999998 599999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 013304 319 SKNTREHKSAFLLRTIVLKTMRQYFKDN 346 (446)
Q Consensus 319 ~~~S~v~~aA~~L~~~f~k~l~~~l~~~ 346 (446)
+++|.+|.+|..|+++|.+.|.+++++.
T Consensus 98 ~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 125 (135)
T 2yyn_A 98 EPDSEVANAGIKLENYFEELLKNLYPEK 125 (135)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999998874
No 13
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.94 E-value=4.2e-27 Score=206.58 Aligned_cols=102 Identities=17% Similarity=0.259 Sum_probs=96.2
Q ss_pred hhhHHHHHHHHHHHhcCcccccccCcCCcc--ccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccC
Q 013304 241 KDSIDDIKGVFESVAQNESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFY 318 (446)
Q Consensus 241 ~~~~k~L~~IL~~L~~~k~A~~F~~PVd~~--e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN 318 (446)
......|..||+.|+.|+.+|+|..|||.. .+||||+||++||||+||++||++|.|.++++|.+||+|||+||+.||
T Consensus 20 ~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 99 (127)
T 2oss_A 20 NQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYN 99 (127)
T ss_dssp HHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 355667778999999999999999999975 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 013304 319 SKNTREHKSAFLLRTIVLKTMRQY 342 (446)
Q Consensus 319 ~~~S~v~~aA~~L~~~f~k~l~~~ 342 (446)
+++|.+|.+|..|+++|.+.|.++
T Consensus 100 ~~~s~i~~~A~~L~~~f~~~~~~l 123 (127)
T 2oss_A 100 KPGDDIVLMAEALEKLFLQKINEL 123 (127)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999998764
No 14
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.94 E-value=3.9e-27 Score=207.49 Aligned_cols=101 Identities=18% Similarity=0.269 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHHhcCcc---cccccCcCCcc--ccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcc
Q 013304 242 DSIDDIKGVFESVAQNES---AFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVV 316 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~---A~~F~~PVd~~--e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~ 316 (446)
...+.|..||+.|+.+++ +|+|..|||.. ++|+||+||++||||+||++||++|.|.++++|.+||+|||+||++
T Consensus 22 ~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~ 101 (130)
T 2ouo_A 22 EQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYK 101 (130)
T ss_dssp HHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 567889999999999875 89999999987 5999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013304 317 FYSKNTREHKSAFLLRTIVLKTMRQY 342 (446)
Q Consensus 317 YN~~~S~v~~aA~~L~~~f~k~l~~~ 342 (446)
||+++|.+|.+|..|+++|.+.|.++
T Consensus 102 yN~~~s~i~~~A~~L~~~f~~~~~~l 127 (130)
T 2ouo_A 102 YNPPDHEVVAMARKLQDVFEMRFAKM 127 (130)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999864
No 15
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.94 E-value=7.5e-27 Score=201.31 Aligned_cols=104 Identities=20% Similarity=0.332 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHHhcCc------ccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHc
Q 013304 242 DSIDDIKGVFESVAQNE------SAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAV 315 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k------~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~ 315 (446)
...+.|..||+.|..++ .+++|..||+...+|+||++|++||||+||++||++|.|.++++|.+||+|||.||+
T Consensus 5 ~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 84 (116)
T 3iu5_A 5 DPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAK 84 (116)
T ss_dssp CHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 67889999999999885 599999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 013304 316 VFYSKNTREHKSAFLLRTIVLKTMRQYFKD 345 (446)
Q Consensus 316 ~YN~~~S~v~~aA~~L~~~f~k~l~~~l~~ 345 (446)
.||+++|.+|.+|..|+++|.+.+++++..
T Consensus 85 ~yN~~~s~~~~~A~~L~~~f~~~~~~l~~~ 114 (116)
T 3iu5_A 85 SYYKPDSPEYKAACKLWDLYLRTRNEFVQK 114 (116)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999988754
No 16
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.94 E-value=1.2e-26 Score=204.09 Aligned_cols=105 Identities=19% Similarity=0.332 Sum_probs=100.1
Q ss_pred hhhHHHHHHHHHHHhcCc-------ccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 013304 241 KDSIDDIKGVFESVAQNE-------SAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANN 313 (446)
Q Consensus 241 ~~~~k~L~~IL~~L~~~k-------~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~N 313 (446)
..+.+.|..||+.|++++ .+++|..||+...+|+||+||++||||+||++||++|.|.++.+|.+||+|||+|
T Consensus 10 ~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~N 89 (129)
T 2grc_A 10 PNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQN 89 (129)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 378899999999999876 6899999999999999999999999999999999999999999999999999999
Q ss_pred HcccCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 013304 314 AVVFYSKNTREHKSAFLLRTIVLKTMRQYFKD 345 (446)
Q Consensus 314 A~~YN~~~S~v~~aA~~L~~~f~k~l~~~l~~ 345 (446)
|+.||+++|.+|.+|..|+++|.+.++++...
T Consensus 90 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 90 AQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999887665
No 17
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.94 E-value=8.4e-27 Score=203.46 Aligned_cols=101 Identities=19% Similarity=0.223 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCC
Q 013304 242 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 321 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~ 321 (446)
.+.+.|..||+.|..++.+++|..||+...+||||++|++||||+||++||++|.|.++++|.+||+|||.||+.||+++
T Consensus 13 p~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 92 (123)
T 3hme_A 13 PIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPD 92 (123)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 013304 322 TREHKSAFLLRTIVLKTMRQY 342 (446)
Q Consensus 322 S~v~~aA~~L~~~f~k~l~~~ 342 (446)
+.+|.+|..|.+.|.+.|.+.
T Consensus 93 s~~~~~A~~L~~~~~~~~~~~ 113 (123)
T 3hme_A 93 TVYYKLAKKILHAGFKMMSKE 113 (123)
T ss_dssp SHHHHHHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987643
No 18
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.94 E-value=1.2e-26 Score=201.38 Aligned_cols=102 Identities=20% Similarity=0.260 Sum_probs=98.5
Q ss_pred hhhHHHHHHHHHHHhcCcc------cccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 013304 241 KDSIDDIKGVFESVAQNES------AFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNA 314 (446)
Q Consensus 241 ~~~~k~L~~IL~~L~~~k~------A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA 314 (446)
..+.+.|..||+.|..++. +++|.+||+...+|+||++|++||||+||++||++|.|.++++|..||+|||.||
T Consensus 7 ~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 86 (120)
T 3ljw_A 7 AYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNA 86 (120)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 3889999999999999877 9999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013304 315 VVFYSKNTREHKSAFLLRTIVLKTMRQY 342 (446)
Q Consensus 315 ~~YN~~~S~v~~aA~~L~~~f~k~l~~~ 342 (446)
+.||+++|.+|.+|..|+++|.+.|.++
T Consensus 87 ~~yN~~~s~~~~~A~~L~~~f~~~~~~i 114 (120)
T 3ljw_A 87 KTYNEPGSQVFKDANSIKKIFYMKKAEI 114 (120)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999874
No 19
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=204.74 Aligned_cols=104 Identities=18% Similarity=0.280 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCC
Q 013304 242 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 321 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~ 321 (446)
.+...|..||+.|..|+.+++|..||+...+|+||++|++||||+||++||++|.|.++++|.+||+|||.||+.||+++
T Consensus 13 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 92 (135)
T 3rcw_A 13 PLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARD 92 (135)
T ss_dssp HHHHHHHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhc
Q 013304 322 TREHKSAFLLRTIVLKTMRQYFKD 345 (446)
Q Consensus 322 S~v~~aA~~L~~~f~k~l~~~l~~ 345 (446)
|.+|.+|..|++.|.+.+++....
T Consensus 93 s~~~~~A~~L~~~~~~~~~~~~~~ 116 (135)
T 3rcw_A 93 TVFYRAAVRLRDQGGVVLRQARRE 116 (135)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988876554
No 20
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.94 E-value=6.5e-27 Score=202.55 Aligned_cols=102 Identities=19% Similarity=0.259 Sum_probs=97.8
Q ss_pred hhHHHHHHHHHHHhcCcc---cccccCcCCccc--cchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcc
Q 013304 242 DSIDDIKGVFESVAQNES---AFVFRHRLDSQK--RGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVV 316 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~---A~~F~~PVd~~e--~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~ 316 (446)
.+.+.|..||..|..++. +|+|..|||... +|+||++|++||||+||++||++|.|.++++|..||+|||.||+.
T Consensus 9 ~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 88 (120)
T 3jvl_A 9 EQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYK 88 (120)
T ss_dssp HHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 788999999999999987 999999999986 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 013304 317 FYSKNTREHKSAFLLRTIVLKTMRQYF 343 (446)
Q Consensus 317 YN~~~S~v~~aA~~L~~~f~k~l~~~l 343 (446)
||+++|.+|.+|..|+++|.+.|.++.
T Consensus 89 yN~~~s~~~~~A~~L~~~f~~~~~~~p 115 (120)
T 3jvl_A 89 YNPPDHEVVAMARKLQDVFEMRFAKMP 115 (120)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHCc
Confidence 999999999999999999999988753
No 21
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=202.32 Aligned_cols=104 Identities=15% Similarity=0.182 Sum_probs=98.4
Q ss_pred hhHHHHHHHHHHHhcCcc------cccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHc
Q 013304 242 DSIDDIKGVFESVAQNES------AFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAV 315 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~------A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~ 315 (446)
...+.|..|++.|..+++ +++|.+||+...+||||++|++||||+||++||++|.|.++++|.+||.|||.||+
T Consensus 9 ~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 88 (126)
T 3mqm_A 9 RLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAE 88 (126)
T ss_dssp HHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 567889999999998764 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 013304 316 VFYSKNTREHKSAFLLRTIVLKTMRQYFKD 345 (446)
Q Consensus 316 ~YN~~~S~v~~aA~~L~~~f~k~l~~~l~~ 345 (446)
.||+++|.+|.+|..|+++|.+.+++..+.
T Consensus 89 ~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~ 118 (126)
T 3mqm_A 89 KYYGRKSPVGRDVCRLRKAYYNARHEASAQ 118 (126)
T ss_dssp HHHCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887665
No 22
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.94 E-value=1.3e-26 Score=209.70 Aligned_cols=103 Identities=19% Similarity=0.242 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHHhcCcccccccCcCCcc--ccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCC
Q 013304 242 DSIDDIKGVFESVAQNESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYS 319 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~A~~F~~PVd~~--e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~ 319 (446)
.....|..||+.|+.++.+|+|..||+.. ++|+||+||++||||+||++||+++.|.++++|.+||+|||.||++||+
T Consensus 32 ~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 111 (154)
T 4alg_A 32 QLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNK 111 (154)
T ss_dssp HHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 56667788899999999999999999988 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhh
Q 013304 320 KNTREHKSAFLLRTIVLKTMRQYFK 344 (446)
Q Consensus 320 ~~S~v~~aA~~L~~~f~k~l~~~l~ 344 (446)
+++.+|.+|..|+++|.+.|.++..
T Consensus 112 ~~s~i~~~A~~L~~~f~~~~~~l~~ 136 (154)
T 4alg_A 112 PTDDIVLMAQTLEKIFLQKVASMPQ 136 (154)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTTSCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCc
Confidence 9999999999999999999987543
No 23
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=1.7e-26 Score=211.37 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=97.1
Q ss_pred ChhhHHHHHHHHHHHhcCcccccccCcCCcc--ccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHccc
Q 013304 240 RKDSIDDIKGVFESVAQNESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVF 317 (446)
Q Consensus 240 ~~~~~k~L~~IL~~L~~~k~A~~F~~PVd~~--e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~Y 317 (446)
...|.+.|..||..|+.++.+++|..||++. .+|+||+||++||||+||++||++|.|.++.+|..||+|||.||+.|
T Consensus 19 ~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~y 98 (166)
T 3fkm_X 19 NKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLY 98 (166)
T ss_dssp THHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999999999999999976 79999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 013304 318 YSKNTREHKSAFLLRTIVLKTMRQY 342 (446)
Q Consensus 318 N~~~S~v~~aA~~L~~~f~k~l~~~ 342 (446)
|+++|.+|.+|..|+++|.+.|.+.
T Consensus 99 N~~~s~i~~~A~~L~~~f~~~l~~~ 123 (166)
T 3fkm_X 99 NTSNSVVAITGKNIETYFNNQLIVM 123 (166)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999998764
No 24
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.93 E-value=3.2e-26 Score=202.01 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=99.4
Q ss_pred hhhHHHHHHHHHHHhcCcc------cccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 013304 241 KDSIDDIKGVFESVAQNES------AFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNA 314 (446)
Q Consensus 241 ~~~~k~L~~IL~~L~~~k~------A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA 314 (446)
....+.|..||+.|.+.+. +++|.+||+...+|+||++|++||||+||++||++|.|.++++|.+||+|||.||
T Consensus 16 ~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na 95 (130)
T 3k2j_A 16 ENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENA 95 (130)
T ss_dssp HHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 4678899999999998655 9999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 013304 315 VVFYSKNTREHKSAFLLRTIVLKTMRQYFKD 345 (446)
Q Consensus 315 ~~YN~~~S~v~~aA~~L~~~f~k~l~~~l~~ 345 (446)
+.||+++|.+|.+|..|+++|.+.++++...
T Consensus 96 ~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 96 KRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999987655
No 25
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.93 E-value=3.6e-26 Score=208.27 Aligned_cols=102 Identities=16% Similarity=0.304 Sum_probs=97.9
Q ss_pred ChhhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCC
Q 013304 240 RKDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYS 319 (446)
Q Consensus 240 ~~~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~ 319 (446)
.....+.|..||..|..|+.+++|..||+...+|+||++|++||||+||++||++|.|.++++|.+||+|||+||++||+
T Consensus 70 ~~~~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 149 (174)
T 2ri7_A 70 TEKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNP 149 (174)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 013304 320 KNTREHKSAFLLRTIVLKTMRQ 341 (446)
Q Consensus 320 ~~S~v~~aA~~L~~~f~k~l~~ 341 (446)
++|.+|.+|..|+++|.++|++
T Consensus 150 ~~s~~~~~A~~L~~~f~~~~~~ 171 (174)
T 2ri7_A 150 SDSPFYQCAEVLESFFVQKLKG 171 (174)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998865
No 26
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.93 E-value=5.5e-26 Score=203.89 Aligned_cols=104 Identities=17% Similarity=0.239 Sum_probs=97.4
Q ss_pred hhHHHHHHHHHHHhcCcc-------cccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 013304 242 DSIDDIKGVFESVAQNES-------AFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNA 314 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~-------A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA 314 (446)
..++.|..||+.|.+... +++|..||+...+|+||+||++||||+||++||++|.|.++++|.+||+|||.||
T Consensus 24 ~~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 103 (150)
T 3tlp_A 24 IRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNA 103 (150)
T ss_dssp HHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 457788888888887654 9999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 013304 315 VVFYSKNTREHKSAFLLRTIVLKTMRQYFKD 345 (446)
Q Consensus 315 ~~YN~~~S~v~~aA~~L~~~f~k~l~~~l~~ 345 (446)
+.||++++.+|.+|..|+++|.+.+.++.+.
T Consensus 104 ~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 134 (150)
T 3tlp_A 104 RHYNEEGSQVYNDAHILEKLLKEKRKELGPL 134 (150)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999988754
No 27
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.92 E-value=1.4e-25 Score=204.00 Aligned_cols=103 Identities=21% Similarity=0.331 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHH-HhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCC
Q 013304 242 DSIDDIKGVFES-VAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSK 320 (446)
Q Consensus 242 ~~~k~L~~IL~~-L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~ 320 (446)
.+...|..|+.. |..++.+|+|..||+...+|+||+||++||||+||++||++|.|.++.+|..||+|||.||++||++
T Consensus 29 ~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~ 108 (158)
T 3uv4_A 29 AFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGP 108 (158)
T ss_dssp HHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 555666666654 7778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhh
Q 013304 321 NTREHKSAFLLRTIVLKTMRQYFK 344 (446)
Q Consensus 321 ~S~v~~aA~~L~~~f~k~l~~~l~ 344 (446)
++.+|.+|..|..+|.+.|.++-.
T Consensus 109 ~s~i~~~A~~L~~~~~~~l~e~~~ 132 (158)
T 3uv4_A 109 ESQYTKTAQEIVNVCYQTLTEYDE 132 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998876543
No 28
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.92 E-value=2.2e-25 Score=205.39 Aligned_cols=105 Identities=14% Similarity=0.232 Sum_probs=99.8
Q ss_pred cChhhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhc--CCCCCHHHHHHHHHHHHHHHcc
Q 013304 239 LRKDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISS--HSIMSIKELFRDLLLLANNAVV 316 (446)
Q Consensus 239 ~~~~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLes--g~Y~S~~EF~~Dl~Lmf~NA~~ 316 (446)
....+++.|..||..|+.|+.+++|..||+.+ +|+||+||++||||+||++||++ |.|.++++|.+||+|||.||++
T Consensus 78 l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~~-~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~ 156 (184)
T 3o36_A 78 LTPIDKRKCERLLLFLYCHEMSLAFQDPVPLT-VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAE 156 (184)
T ss_dssp CCHHHHHHHHHHHHHHHHSTTCHHHHSCCCTT-STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhchhhhhhccccccC-CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34478999999999999999999999999964 89999999999999999999998 7999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 013304 317 FYSKNTREHKSAFLLRTIVLKTMRQYFK 344 (446)
Q Consensus 317 YN~~~S~v~~aA~~L~~~f~k~l~~~l~ 344 (446)
||++++.+|.+|..|+++|.+.|++++|
T Consensus 157 yN~~~s~v~~~a~~L~~~f~~~~~~~~P 184 (184)
T 3o36_A 157 FNEPDSEVANAGIKLENYFEELLKNLYP 184 (184)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999998875
No 29
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.92 E-value=4.2e-25 Score=194.24 Aligned_cols=101 Identities=22% Similarity=0.341 Sum_probs=93.6
Q ss_pred hhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCC
Q 013304 242 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 321 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~ 321 (446)
..+..|..||+.|..++.+++|..||+...+||||++|++||||+||++||++|.|.++++|.+||+|||.||+.||+++
T Consensus 10 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 89 (130)
T 3dai_A 10 ELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDR 89 (130)
T ss_dssp HHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHH----HHHHHHHHHHHHHHHHHH
Q 013304 322 TRE----HKSAFLLRTIVLKTMRQY 342 (446)
Q Consensus 322 S~v----~~aA~~L~~~f~k~l~~~ 342 (446)
|++ +.+|..|++.+...+.+.
T Consensus 90 s~~~~~i~~~A~~L~~~~~~~i~~e 114 (130)
T 3dai_A 90 DPGDRLIRHRACALRDTAYAIIKEE 114 (130)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 977 677888888877777543
No 30
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.91 E-value=3.2e-24 Score=201.42 Aligned_cols=108 Identities=14% Similarity=0.222 Sum_probs=102.6
Q ss_pred CcChhhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhc---CCCCCHHHHHHHHHHHHHHH
Q 013304 238 SLRKDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISS---HSIMSIKELFRDLLLLANNA 314 (446)
Q Consensus 238 ~~~~~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLes---g~Y~S~~EF~~Dl~Lmf~NA 314 (446)
.+...+.+.|..||..|+.|+.+++|..||+. .+|+||+||++||||+||++||++ |.|.++.+|.+||+|||+||
T Consensus 77 ~ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na 155 (207)
T 3u5n_A 77 GLSPVDQRKCERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNC 155 (207)
T ss_dssp SSCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHH
Confidence 34557889999999999999999999999987 799999999999999999999997 89999999999999999999
Q ss_pred cccCC-----------------CCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 013304 315 VVFYS-----------------KNTREHKSAFLLRTIVLKTMRQYFKDN 346 (446)
Q Consensus 315 ~~YN~-----------------~~S~v~~aA~~L~~~f~k~l~~~l~~~ 346 (446)
++||+ +++.++.+|..|+.+|.++|++++|+.
T Consensus 156 ~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~~ 204 (207)
T 3u5n_A 156 ERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSDR 204 (207)
T ss_dssp HHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999 999999999999999999999999874
No 31
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=2.9e-24 Score=189.97 Aligned_cols=101 Identities=18% Similarity=0.300 Sum_probs=93.0
Q ss_pred ChhhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCC
Q 013304 240 RKDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYS 319 (446)
Q Consensus 240 ~~~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~ 319 (446)
.+.++..|..||+.|..++.+++|..| +||||+||++||||+||++||++|.|.++.+|.+||+|||+||+.||+
T Consensus 10 ~~~L~~~~~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~ 84 (131)
T 2dkw_A 10 LRELRLFLRDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNP 84 (131)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 357888999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred CCCHH----HHHHHHHHHHHHHHHHHHhhc
Q 013304 320 KNTRE----HKSAFLLRTIVLKTMRQYFKD 345 (446)
Q Consensus 320 ~~S~v----~~aA~~L~~~f~k~l~~~l~~ 345 (446)
++|++ +.+|..|++.|...|.+.+..
T Consensus 85 ~~s~~~~~i~~~A~~L~~~~~~~l~~~l~~ 114 (131)
T 2dkw_A 85 DKDPGDKIIRHRACTLKDTAHAIIAAELDP 114 (131)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99964 688999999988888665543
No 32
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.90 E-value=6.3e-24 Score=206.35 Aligned_cols=102 Identities=14% Similarity=0.229 Sum_probs=99.1
Q ss_pred hhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCC
Q 013304 242 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 321 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~ 321 (446)
.+...|..||+.|..++.+++|..||+...+|+||++|++||||+||++||++|.|.++.+|..||+|||+||++||+++
T Consensus 14 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 93 (265)
T 3uv5_A 14 TLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPK 93 (265)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHh
Q 013304 322 TREHKSAFLLRTIVLKTMRQYF 343 (446)
Q Consensus 322 S~v~~aA~~L~~~f~k~l~~~l 343 (446)
|.+|.+|..|.++|.+.|.+..
T Consensus 94 s~i~~~A~~l~~~~~~~~~~~~ 115 (265)
T 3uv5_A 94 HSLTQISQSMLDLCDEKLKEKE 115 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTH
T ss_pred ChHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999887754
No 33
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.90 E-value=3.9e-24 Score=199.30 Aligned_cols=101 Identities=13% Similarity=0.128 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhc--CCCCHHHHHHHhhcC---CCCCHHHHHHHHHHHHHHHcc
Q 013304 242 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMIL--RHMDVDTIRSKISSH---SIMSIKELFRDLLLLANNAVV 316 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK--~PMDLsTIKkKLesg---~Y~S~~EF~~Dl~Lmf~NA~~ 316 (446)
...+.|..||..|+.|+.+|+|++||+ |+||+||+ +||||+||++||+++ .|.+++||.+||+|||+||++
T Consensus 76 ~~~~~c~~iL~~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~ 151 (189)
T 2ro1_A 76 ANQRKCERVLLALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNK 151 (189)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 567789999999999999999999999 68999998 899999999999999 999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013304 317 FYSKNTREHKSAFLLRTIVLKTMRQYFKDNE 347 (446)
Q Consensus 317 YN~~~S~v~~aA~~L~~~f~k~l~~~l~~~~ 347 (446)
|| +++.+|.+|..|+++|+++|.++++...
T Consensus 152 yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~~ 181 (189)
T 2ro1_A 152 LT-EDKADVQSIIGLQRFFETRMNEAFGDTK 181 (189)
T ss_dssp HC-CSSCSSHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HC-CCCHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99 5889999999999999999999988743
No 34
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.89 E-value=3.7e-23 Score=200.95 Aligned_cols=103 Identities=21% Similarity=0.331 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHH-HhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCC
Q 013304 242 DSIDDIKGVFES-VAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSK 320 (446)
Q Consensus 242 ~~~k~L~~IL~~-L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~ 320 (446)
.+...|..|+.. |..++.+|+|..||+...+|+||++|++||||+||++||++|.|.++.+|.+||.|||.||+.||++
T Consensus 136 ~~~~il~~i~~~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~ 215 (265)
T 3uv5_A 136 AFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGP 215 (265)
T ss_dssp HHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 455556665544 7889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhh
Q 013304 321 NTREHKSAFLLRTIVLKTMRQYFK 344 (446)
Q Consensus 321 ~S~v~~aA~~L~~~f~k~l~~~l~ 344 (446)
+|.+|.+|..|..+|.+.|.++..
T Consensus 216 ~s~~~~~A~~l~~~~~~~~~~~~~ 239 (265)
T 3uv5_A 216 ESQYTKTAQEIVNVCYQTLTEYDE 239 (265)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998877543
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.88 E-value=3.6e-23 Score=204.03 Aligned_cols=100 Identities=14% Similarity=0.253 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCC
Q 013304 242 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 321 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~ 321 (446)
.....|..||+.|+.++.+++|..||+...+|+||+||++||||+||++||++|.|.++.+|..||+|||+||+.||+++
T Consensus 47 ~l~~~~~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 126 (292)
T 3aad_A 47 TLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPK 126 (292)
T ss_dssp HHHHHHHHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHhCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 013304 322 TREHKSAFLLRTIVLKTMRQ 341 (446)
Q Consensus 322 S~v~~aA~~L~~~f~k~l~~ 341 (446)
+.+|.+|..|.++|.+.+.+
T Consensus 127 s~i~~~A~~L~~~~~~~~~~ 146 (292)
T 3aad_A 127 HSLTQISQSMLDLCDEKLKE 146 (292)
T ss_dssp SHHHHHHTHHHHTTTTTGGG
T ss_pred hHHHHHHHHHHHHHHhhhhc
Confidence 99999999999998877654
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.87 E-value=1.9e-22 Score=198.92 Aligned_cols=91 Identities=24% Similarity=0.392 Sum_probs=87.0
Q ss_pred HHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHH
Q 013304 253 SVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREHKSAFLLR 332 (446)
Q Consensus 253 ~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S~v~~aA~~L~ 332 (446)
.|+.++.+++|..||+...+||||+||++||||+||++||++|.|.++.+|..||+|||.||+.||+++|.+|.+|..|+
T Consensus 181 ~l~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~ 260 (292)
T 3aad_A 181 KMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIV 260 (292)
T ss_dssp TGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred hhhcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 013304 333 TIVLKTMRQYF 343 (446)
Q Consensus 333 ~~f~k~l~~~l 343 (446)
++|.+.|.++-
T Consensus 261 ~~~~~~~~~~~ 271 (292)
T 3aad_A 261 NVCYQTLTEYD 271 (292)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.87 E-value=2.3e-22 Score=200.28 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=84.2
Q ss_pred cCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHHH
Q 013304 256 QNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREHKSAFLLRTIV 335 (446)
Q Consensus 256 ~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S~v~~aA~~L~~~f 335 (446)
.|+.+++|..||+...+|+||+||++||||+||++||++|.|.++.+|.+||+|||+||+.||+++|.+|.+|..|+++|
T Consensus 177 ~~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f 256 (311)
T 2r0y_A 177 KVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYF 256 (311)
T ss_dssp SSCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 013304 336 LKTMRQY 342 (446)
Q Consensus 336 ~k~l~~~ 342 (446)
.+.|++.
T Consensus 257 ~~~~~~~ 263 (311)
T 2r0y_A 257 NYLIQKE 263 (311)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999874
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.86 E-value=2.8e-22 Score=203.05 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=84.1
Q ss_pred cCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHHH
Q 013304 256 QNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREHKSAFLLRTIV 335 (446)
Q Consensus 256 ~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S~v~~aA~~L~~~f 335 (446)
.|+.+|+|..|||...+|+||+||++||||+||++||++|.|.++.+|..||+|||+||+.||+++|.+|.+|..|+++|
T Consensus 227 ~~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f 306 (361)
T 2r10_A 227 KVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYF 306 (361)
T ss_dssp SSCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred CCcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 013304 336 LKTMRQY 342 (446)
Q Consensus 336 ~k~l~~~ 342 (446)
.+.|.+.
T Consensus 307 ~~~~~~~ 313 (361)
T 2r10_A 307 NYLIQKE 313 (361)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999873
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.81 E-value=2e-20 Score=189.39 Aligned_cols=99 Identities=12% Similarity=0.082 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHHhc--CcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCC-CHHHHHHHHHHHHHHHcccC
Q 013304 242 DSIDDIKGVFESVAQ--NESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIM-SIKELFRDLLLLANNAVVFY 318 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~--~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~-S~~EF~~Dl~Lmf~NA~~YN 318 (446)
.+...|..+|+.|.+ ...+++|..||+...+||||+||++||||+||++|| +.|. ++++|..||+|||+||+.||
T Consensus 78 ~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~yN 155 (361)
T 2r10_A 78 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYN 155 (361)
T ss_dssp THHHHHHHHHHHHHHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhcC
Confidence 446778888888865 346899999999999999999999999999999999 4444 89999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 013304 319 SKNTREHKSAFLLRTIVLKTMRQY 342 (446)
Q Consensus 319 ~~~S~v~~aA~~L~~~f~k~l~~~ 342 (446)
+++|.+|.+|..|+++|.++|.+.
T Consensus 156 ~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 156 EYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999988764
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.81 E-value=2.8e-20 Score=185.27 Aligned_cols=99 Identities=12% Similarity=0.082 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHHHhcC--cccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCC-CHHHHHHHHHHHHHHHcccC
Q 013304 242 DSIDDIKGVFESVAQN--ESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIM-SIKELFRDLLLLANNAVVFY 318 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~--k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~-S~~EF~~Dl~Lmf~NA~~YN 318 (446)
.|...+..+|..+... ..+++|.+||+...+||||+||++||||+||++|| +.|. ++++|..||+|||+||+.||
T Consensus 28 ~~~~~~~~~L~~~~~~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN 105 (311)
T 2r0y_A 28 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYN 105 (311)
T ss_dssp THHHHHHHHHHHHHHHSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHcc
Confidence 6777777888887763 47899999999999999999999999999999999 4554 89999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 013304 319 SKNTREHKSAFLLRTIVLKTMRQY 342 (446)
Q Consensus 319 ~~~S~v~~aA~~L~~~f~k~l~~~ 342 (446)
+++|.+|.+|..|+++|.++|.+.
T Consensus 106 ~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 106 EYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999988764
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=147.77 Aligned_cols=101 Identities=12% Similarity=0.144 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHHhcCcc------cccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHc
Q 013304 242 DSIDDIKGVFESVAQNES------AFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAV 315 (446)
Q Consensus 242 ~~~k~L~~IL~~L~~~k~------A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~ 315 (446)
.-...|..|++.|..+++ +.+|....+.. |+||. ++||||.+|++||+.|.|.++++|..||.|||+||.
T Consensus 7 ~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NAr 82 (147)
T 3iu6_A 7 LIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERAR 82 (147)
T ss_dssp HHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 667889999999999764 66899877766 78998 999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 013304 316 VFYSKNTREHKSAFLLRTIVLKTMRQYFKDN 346 (446)
Q Consensus 316 ~YN~~~S~v~~aA~~L~~~f~k~l~~~l~~~ 346 (446)
+||.++|.+|.+|..|+.+|.+...++..+.
T Consensus 83 ~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~g 113 (147)
T 3iu6_A 83 RMNRTDSEIYEDAVELQQFFIKIRDELCKNG 113 (147)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999877763
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.60 E-value=1.4e-15 Score=141.68 Aligned_cols=92 Identities=12% Similarity=0.189 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhcCcccccccCcCCccccchhHHhhcCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHcccCCCCCH
Q 013304 244 IDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTR 323 (446)
Q Consensus 244 ~k~L~~IL~~L~~~k~A~~F~~PVd~~e~PdY~~IIK~PMDLsTIKkKLesg~Y~S~~EF~~Dl~Lmf~NA~~YN~~~S~ 323 (446)
...|..||+.|..|+.+++|+... ++.||||.||++||++|.|.|+.||..||.|||+||+.||.+++.
T Consensus 77 ~~~l~~vl~~L~~~~~s~~~~~y~-----------~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~~e 145 (183)
T 3lqh_A 77 QISLKQVLTALLNSRTTSHLLRYR-----------QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPE 145 (183)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHTCC-----------C--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHhccccHhhhhhh-----------hcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCChh
Confidence 445788999999999999998842 599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Q 013304 324 EHKSAFLLRTIVLKTMRQYFKDN 346 (446)
Q Consensus 324 v~~aA~~L~~~f~k~l~~~l~~~ 346 (446)
+..++..|+.+|.+.|++.+|--
T Consensus 146 ~~~ag~~l~~~f~~~l~~vfpwf 168 (183)
T 3lqh_A 146 IKKANSMVKSFFIRQMERVFPWF 168 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTS
T ss_pred hhhhhhHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999873
No 43
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.99 E-value=7.3e-06 Score=62.52 Aligned_cols=46 Identities=41% Similarity=0.584 Sum_probs=41.7
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHh-hccCCCCCCCHHHHHHHHHHH
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELR-ARTVCPYTVTPEMCKAHYEDL 58 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~-~r~~~~~~~t~~~C~~k~~~l 58 (446)
...|..-|+.+|.-||..||..+|..||..|. .| |+..|+.+|..+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~R-------t~~qcr~r~~~~ 55 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIADYVGNAR-------TKEECRDHYLKT 55 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSC-------CHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCC-------CHHHHHHHHHHH
Confidence 46799999999999999999999999999998 77 779999999753
No 44
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.81 E-value=2.5e-05 Score=59.77 Aligned_cols=47 Identities=32% Similarity=0.516 Sum_probs=42.4
Q ss_pred ccccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 013304 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDL 58 (446)
Q Consensus 5 ~~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l 58 (446)
....|..-|+.+|.-||..||..+|..||..|..| |+..|+.+|..+
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~R-------t~~qcr~r~~~~ 53 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTK-------TKEECEKHYMKY 53 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTS-------CHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCC-------CHHHHHHHHHHH
Confidence 45689999999999999999999999999999887 779999999754
No 45
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.80 E-value=2.1e-05 Score=58.61 Aligned_cols=47 Identities=21% Similarity=0.406 Sum_probs=42.4
Q ss_pred ccchhhHHHHHHHHhhhccCCCchHHHHHHh--hccCCCCCCCHHHHHHHHHHHHh
Q 013304 7 EVWGTWEELLLGGAVLRHGTRDWNLVAAELR--ARTVCPYTVTPEMCKAHYEDLQQ 60 (446)
Q Consensus 7 ~~wgt~eelll~~av~Rhg~~~w~~va~e~~--~r~~~~~~~t~~~C~~k~~~l~~ 60 (446)
+.|..-|+-+|..+|..||..+|..||..+. .| |+..|+.+|..|.+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~R-------t~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNR-------TSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSC-------CHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCC-------CHHHHHHHHHHHHc
Confidence 5799999999999999999999999999986 44 78999999998864
No 46
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.70 E-value=3.7e-05 Score=60.00 Aligned_cols=50 Identities=16% Similarity=0.313 Sum_probs=42.4
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHh
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQ 60 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~ 60 (446)
...|..-|+-+|.-+|.+||..+|..||.++. ....|+.+|+.+|..|.+
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~-----~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYP-----FVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC-----CSSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCchHHHHhhcC-----CCCCCHHHHHHHHHHHhc
Confidence 35799999999999999999999999998854 113488999999998864
No 47
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.68 E-value=4e-05 Score=56.63 Aligned_cols=46 Identities=28% Similarity=0.507 Sum_probs=41.4
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDL 58 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l 58 (446)
.+.|..-|+.+|..+|..||..+|..||..|..| |+..|+.+|..+
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~R-------t~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNR-------TDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTC-------CHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCC-------CHHHHHHHHHHH
Confidence 3579999999999999999999999999998777 779999999765
No 48
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.51 E-value=7.4e-05 Score=56.79 Aligned_cols=47 Identities=23% Similarity=0.455 Sum_probs=42.0
Q ss_pred ccccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 013304 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDL 58 (446)
Q Consensus 5 ~~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l 58 (446)
....|..-|+.+|.-+|..||..+|..||..|..| |+..|+.+|..+
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~R-------t~~qcr~Rw~~~ 53 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNR-------TDQQCQYRWLRV 53 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSS-------CHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCC-------CHHHHHHHHHHH
Confidence 35689999999999999999999999999999777 779999999754
No 49
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.51 E-value=5.2e-05 Score=61.57 Aligned_cols=46 Identities=33% Similarity=0.480 Sum_probs=41.1
Q ss_pred ccccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 013304 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDL 58 (446)
Q Consensus 5 ~~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l 58 (446)
....|..-|+++|.-||..|| .+|..||..|.+| |+.+|+.+|..|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~R-------T~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSR-------TQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSC-------CHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCC-------CHHHHHHHHHHh
Confidence 457899999999999999999 9999999999887 779999998643
No 50
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.46 E-value=7.3e-05 Score=55.25 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=40.6
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYED 57 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~ 57 (446)
.+.|..-|+.+|.-+|..||..+|..||..|..| |+..|+.+|..
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~R-------t~~qcr~Rw~~ 47 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGR-------IGKQCRERWHN 47 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTC-------CHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCC-------CHHHHHHHHHH
Confidence 4679999999999999999999999999998777 67999999974
No 51
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.41 E-value=0.00015 Score=56.68 Aligned_cols=50 Identities=20% Similarity=0.340 Sum_probs=44.0
Q ss_pred ccccchhhHHHHHHHHhhhccCCCchHHHHHHh--hccCCCCCCCHHHHHHHHHHHHhh
Q 013304 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELR--ARTVCPYTVTPEMCKAHYEDLQQR 61 (446)
Q Consensus 5 ~~~~wgt~eelll~~av~Rhg~~~w~~va~e~~--~r~~~~~~~t~~~C~~k~~~l~~r 61 (446)
....|..-|+.+|..+|..||..+|..||..+. .| |+..|+.+|..+.+.
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~R-------t~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNR-------TSVMLKDRWRTMKKL 60 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSC-------CHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCC-------CHHHHHHHHHHHcCC
Confidence 456799999999999999999999999999986 45 789999999987654
No 52
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.30 E-value=0.00022 Score=55.81 Aligned_cols=45 Identities=29% Similarity=0.609 Sum_probs=40.8
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYED 57 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~ 57 (446)
.+.|..-|+.+|..+|..||..+|..||..|..| |+..|+.+|..
T Consensus 9 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~R-------t~~qcr~Rw~~ 53 (70)
T 2dim_A 9 GGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRK-------SAKQCKARWYE 53 (70)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTC-------CHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCC-------CHHHHHHHHHH
Confidence 4679999999999999999999999999999876 77999999965
No 53
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.18 E-value=0.00048 Score=54.34 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=44.7
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhc
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFY 63 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~ 63 (446)
...|..-|+.+|.-+|..||. +|..||..|..| |+..|+..|..+.++.-
T Consensus 9 ~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~R-------t~~q~k~r~~~~l~~~~ 58 (72)
T 2cu7_A 9 SVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSR-------TVLQVKSYARQYFKNKV 58 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSS-------CHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCC-------CHHHHHHHHHHHHHHHH
Confidence 467999999999999999999 999999999988 67999999998877653
No 54
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=97.01 E-value=0.00075 Score=55.36 Aligned_cols=52 Identities=21% Similarity=0.054 Sum_probs=42.0
Q ss_pred cchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhh
Q 013304 8 VWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRF 62 (446)
Q Consensus 8 ~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~ 62 (446)
.|..-||-+|.-+|.+||.++|..|+..-- ......|...|+.||..|.++-
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~---~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAF---DNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHC---TTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhc---cccCCCCHHHHHHHHHHHHHhc
Confidence 588999999999999999999999998621 0112348899999999987643
No 55
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=96.92 E-value=0.00055 Score=54.95 Aligned_cols=48 Identities=19% Similarity=0.311 Sum_probs=42.9
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhh
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRF 62 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~ 62 (446)
.+.|..-|+-+|.-+|..||.. |..||..| .| |+..|+..|.-|++..
T Consensus 23 k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l-gR-------t~~q~knRw~~L~~~~ 70 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKHGND-WATIGAAL-GR-------SASSVKDRCRLMKDTC 70 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH-TS-------CHHHHHHHHHHCSCCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh-CC-------CHHHHHHHHHHHHHHc
Confidence 4679999999999999999987 99999999 99 6799999999887753
No 56
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.87 E-value=0.0012 Score=55.53 Aligned_cols=50 Identities=18% Similarity=0.377 Sum_probs=45.1
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhc
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFY 63 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~ 63 (446)
.+.|..-|+.+|.-+|..||. .|..||..|..| |+..|+.+|..|.++..
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~gR-------t~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGP-KWNKISKFLKNR-------SDNNIRNRWMMIARHRA 102 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSS-------CHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCc-CHHHHHHHCCCC-------CHHHHHHHHHHHHhhHH
Confidence 468999999999999999997 799999999888 67999999999998854
No 57
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.85 E-value=0.0014 Score=50.60 Aligned_cols=47 Identities=30% Similarity=0.401 Sum_probs=41.5
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhh
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQR 61 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r 61 (446)
...|..-|+.+|..+|..||. +|..||. +..| |+..|+..|..+-+.
T Consensus 9 k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gR-------t~~qcr~Rw~~~l~~ 55 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGR-------TAAQCLEHYEFLLDK 55 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSS-------CHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCc-------CHHHHHHHHHHHhCh
Confidence 467999999999999999998 9999999 8776 779999999987654
No 58
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.85 E-value=0.0011 Score=55.77 Aligned_cols=44 Identities=25% Similarity=0.549 Sum_probs=39.6
Q ss_pred ccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 013304 7 EVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYED 57 (446)
Q Consensus 7 ~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~ 57 (446)
+.|..-|+-+|.-+|..||..+|..||..|..| |+..|..+|..
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~R-------t~~qcr~Rw~~ 45 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITR-------NPRQCRERWNN 45 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTS-------CHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCC-------CHHHHHHHHHH
Confidence 568889999999999999999999999999877 67999998864
No 59
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.83 E-value=0.001 Score=52.60 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=42.0
Q ss_pred ccccchhhHHHHHHHHhhhccC-----CCchHHHHHHhhccCCCCCCCHHHHHHHHHHHH
Q 013304 5 VIEVWGTWEELLLGGAVLRHGT-----RDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQ 59 (446)
Q Consensus 5 ~~~~wgt~eelll~~av~Rhg~-----~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~ 59 (446)
....|..-|+.+|.-||..||. .+|..||..|..| |+.+|+..|..+-
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~R-------t~~qcr~r~~~~l 59 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNR-------TAKQVASQVQKYF 59 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSS-------CHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCC-------CHHHHHHHHHHHH
Confidence 3568999999999999999997 8999999999888 6799999995443
No 60
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=96.73 E-value=0.0008 Score=58.55 Aligned_cols=46 Identities=20% Similarity=0.437 Sum_probs=41.0
Q ss_pred ccccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 013304 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYED 57 (446)
Q Consensus 5 ~~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~ 57 (446)
|.+.|..-|+-+|.-+|..||..+|..||..|..| |+..|..+|..
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~R-------t~~qcr~Rw~~ 46 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNR-------SPKQCRERWFN 46 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTS-------CHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCC-------CHHHHHHHHhh
Confidence 45789999999999999999999999999998877 67999998864
No 61
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.70 E-value=0.00055 Score=54.89 Aligned_cols=50 Identities=24% Similarity=0.326 Sum_probs=44.3
Q ss_pred cccchhhHHHHHHHHhhhcc---CCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhh
Q 013304 6 IEVWGTWEELLLGGAVLRHG---TRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRF 62 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg---~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~ 62 (446)
...|..-|+.+|.-||..|| ...|..||..|..| |+..|+..|..|.+-.
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGR-------T~~qcr~Ry~~L~~d~ 70 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSK-------SKEDCIARYKLLVSGP 70 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSS-------CHHHHHHHHHHHHSSC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCC-------CHHHHHHHHHHHHHcc
Confidence 46799999999999999999 57899999999888 7799999999997654
No 62
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.66 E-value=0.0014 Score=56.74 Aligned_cols=51 Identities=22% Similarity=0.342 Sum_probs=45.7
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhcC
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFYG 64 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~~ 64 (446)
.+.|..-|+.+|.-+|..|| ..|..||..|..| |...|+.+|..|.+++.-
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~gR-------t~~~~k~rw~~l~~k~~~ 112 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYG-RQWAIIAKFFPGR-------TDIHIKNRWVTISNKLGI 112 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTC-------CHHHHHHHHHHHHHHTTC
T ss_pred cccCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCC-------CHHHHHHHHHHHHHhcCC
Confidence 46799999999999999999 5799999988887 779999999999999864
No 63
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.66 E-value=0.0011 Score=55.30 Aligned_cols=48 Identities=27% Similarity=0.411 Sum_probs=42.2
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhh
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQR 61 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r 61 (446)
.+.|..-|+.+|.-+|..||. .|..||..|..| |+..|+.+|..|.+|
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~gR-------t~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGR-------TDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTTC-------CHHHHHHHHHHHTC-
T ss_pred ccCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCC-------CHHHHHHHHHHHHhc
Confidence 467999999999999999995 799999988777 779999999998776
No 64
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=95.66 E-value=0.0003 Score=58.00 Aligned_cols=51 Identities=24% Similarity=0.434 Sum_probs=45.4
Q ss_pred ccccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhc
Q 013304 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFY 63 (446)
Q Consensus 5 ~~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~ 63 (446)
..+.|..-|+.+|.-+|..||. +|..||..|.+| |...|+..|..+.+|+.
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gR-------t~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSK-------TVSQCKNFYFNYKKRQN 65 (89)
Confidence 3467999999999999999999 799999999988 55899999999988874
No 65
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.60 E-value=0.0013 Score=54.84 Aligned_cols=46 Identities=20% Similarity=0.508 Sum_probs=40.8
Q ss_pred ccccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 013304 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYED 57 (446)
Q Consensus 5 ~~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~ 57 (446)
..+.|..-|+-+|.-+|..||..+|..||..|..| |+..|+.+|..
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~R-------t~~qcr~Rw~~ 48 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGR-------IGKQCRERWHN 48 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTC-------CHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCC-------CHHHHHHHHHh
Confidence 45689999999999999999999999999988777 67999988865
No 66
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=96.57 E-value=0.00047 Score=61.66 Aligned_cols=49 Identities=31% Similarity=0.487 Sum_probs=5.9
Q ss_pred CCCcccccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHH
Q 013304 1 MGAEVIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYE 56 (446)
Q Consensus 1 ~~~~~~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~ 56 (446)
||......|..-|+-+|.-+|..||..+|..||..|..| |+..|..+|.
T Consensus 1 ~g~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~R-------t~~qcr~Rw~ 49 (159)
T 1h89_C 1 MGHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNR-------TDVQCQHRWQ 49 (159)
T ss_dssp -------------------------------------------------CHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCC-------CHHHHHHHHH
Confidence 888889999999999999999999999999999999877 5578998885
No 67
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=96.40 E-value=0.0037 Score=54.83 Aligned_cols=55 Identities=22% Similarity=0.079 Sum_probs=45.2
Q ss_pred ccccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhh
Q 013304 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRF 62 (446)
Q Consensus 5 ~~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~ 62 (446)
-...|..-|+-+|.-+|.+||..+|..|+...-. .....|...|+.||..|.+.-
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~---~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFE---NVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHS---SSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhcc---ccCCCCHHHHHHHHHHHHhhc
Confidence 3467999999999999999999999999987531 123458899999999998643
No 68
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.38 E-value=0.0026 Score=54.99 Aligned_cols=44 Identities=27% Similarity=0.626 Sum_probs=39.5
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYED 57 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~ 57 (446)
.+.|..-|+-+|..+|.+||. +|..||..|..| |+..|+.+|..
T Consensus 11 k~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~R-------t~~qcr~Rw~~ 54 (126)
T 3osg_A 11 KQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNR-------NARQCRDRWKN 54 (126)
T ss_dssp SCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTC-------CHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCC-------CHHHHHHHHhh
Confidence 467999999999999999999 999999998877 66899999874
No 69
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=96.37 E-value=0.0034 Score=52.51 Aligned_cols=51 Identities=29% Similarity=0.401 Sum_probs=44.0
Q ss_pred ccccchhhHHHHHHHHhhhcc---CCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhh
Q 013304 5 VIEVWGTWEELLLGGAVLRHG---TRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRF 62 (446)
Q Consensus 5 ~~~~wgt~eelll~~av~Rhg---~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~ 62 (446)
....|..-|+.+|--||..|| ...|..||..|..| |+..|+.+|..|....
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGR-------T~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGR-------TPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTC-------CHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCC-------CHHHHHHHHHHHHHHH
Confidence 346799999999999999998 56799999999888 6799999999987553
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=96.32 E-value=0.0037 Score=60.16 Aligned_cols=64 Identities=25% Similarity=0.456 Sum_probs=54.3
Q ss_pred ccccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhcCCcchhHHHhhhhhhcC
Q 013304 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFYGCKSLESKLETLKAERG 80 (446)
Q Consensus 5 ~~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~~~~slq~~~~~l~~ek~ 80 (446)
....|..-|.+++.-|+..|| .+|..||.-|.+| |+..|+.-|..-.+|| .|...++..+++..
T Consensus 132 ~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTK-------T~~QcKnfY~~~kKRl----nLD~ilke~eae~g 195 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNK-------SVVQVKNFFVNYRRRF----NIDEVLQEWEAEHG 195 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSC-------CHHHHHHHHHHTTTTT----THHHHHHHHHTC--
T ss_pred cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCC-------CHHHHHHHHHHHHHHh----hHHHHHHHHHHhcC
Confidence 345899999999999999999 6899999999998 6699999999999988 47877877766554
No 71
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.31 E-value=0.0026 Score=54.39 Aligned_cols=55 Identities=20% Similarity=0.023 Sum_probs=44.8
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhc
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFY 63 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~ 63 (446)
...|..-|+-+|.-+|.+||...|..|+..+-. .....|...|+.||..|.++-+
T Consensus 13 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~---~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 13 RRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFE---DADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp CCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSS---STTCCCHHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcc---ccCCCCHHHHHHHHHHHHhhcc
Confidence 467999999999999999999999999975421 1234589999999999987543
No 72
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.29 E-value=0.0031 Score=54.45 Aligned_cols=46 Identities=20% Similarity=0.433 Sum_probs=40.8
Q ss_pred ccccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 013304 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYED 57 (446)
Q Consensus 5 ~~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~ 57 (446)
..+.|..-|+-+|.-+|..||..+|..||..|..| |+..|+.+|..
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~R-------t~~qcr~Rw~~ 71 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGR-------IGKQCRERWHN 71 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSC-------CHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCC-------cHHHHHHHHHH
Confidence 35679999999999999999999999999999877 67899998864
No 73
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=96.16 E-value=0.0044 Score=54.25 Aligned_cols=54 Identities=20% Similarity=0.089 Sum_probs=44.8
Q ss_pred ccccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhh
Q 013304 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQR 61 (446)
Q Consensus 5 ~~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r 61 (446)
-...|..-|+-+|.-+|.+||...|..|+..+.. .....|...|+.||..|.+.
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~---~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFD---NADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCS---CCSSCCSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcc---ccCCCCHHHHHHHHHHHHhh
Confidence 3468999999999999999999999999998732 12234779999999999874
No 74
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.89 E-value=0.0031 Score=54.46 Aligned_cols=48 Identities=27% Similarity=0.419 Sum_probs=42.7
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhh
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQR 61 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r 61 (446)
.+.|..-|+.+|.-+|..||. .|..||..|..| |+..|+.+|..|.+|
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~gR-------t~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGR-------TDNAVKNHWNSTMRR 126 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS-CHHHHGGGSTTC-------CHHHHHHHHHTTTTC
T ss_pred cccCCHHHHHHHHHHHHHHCc-CHHHHHHHCCCC-------CHHHHHHHHHHHHhc
Confidence 467999999999999999996 799999988888 779999999988765
No 75
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.84 E-value=0.0062 Score=48.99 Aligned_cols=54 Identities=24% Similarity=0.272 Sum_probs=44.1
Q ss_pred CcccccchhhHHHHHHHHhhhccC---CCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhc
Q 013304 3 AEVIEVWGTWEELLLGGAVLRHGT---RDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFY 63 (446)
Q Consensus 3 ~~~~~~wgt~eelll~~av~Rhg~---~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~ 63 (446)
+-....|.--|+.+|-.|+.-++. ..|..||.-|..| |++.|+.+|..|.|=|.
T Consensus 5 ~~~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gK-------T~eE~~~hY~~l~~~~~ 61 (73)
T 1wgx_A 5 SSGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSR-------SPEECQRKYMENPRGKG 61 (73)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTS-------CHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCC-------CHHHHHHHHHHHHhccc
Confidence 334567988899999888876654 6799999999988 77999999999976554
No 76
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.55 E-value=0.019 Score=45.81 Aligned_cols=50 Identities=16% Similarity=0.263 Sum_probs=42.9
Q ss_pred ccccchhhHHHHHHHHhhhcc---CCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhh
Q 013304 5 VIEVWGTWEELLLGGAVLRHG---TRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRF 62 (446)
Q Consensus 5 ~~~~wgt~eelll~~av~Rhg---~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~ 62 (446)
....|..-|+-+|-.||..|+ ...|..||..| .| |++.|+.+|..|+.-.
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gR-------t~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GR-------SVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TS-------CHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CC-------CHHHHHHHHHHHHHhc
Confidence 346799999999999999998 35699999998 55 8899999999998763
No 77
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.50 E-value=0.014 Score=44.72 Aligned_cols=48 Identities=19% Similarity=0.434 Sum_probs=41.0
Q ss_pred cccccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHH
Q 013304 4 EVIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQ 59 (446)
Q Consensus 4 ~~~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~ 59 (446)
..+..|..-|.-++..|+..|| .+|..||..|..| |+..|...|---+
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~r-------t~~~~v~~Yy~~K 57 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERK-------SVPDCVLYYYLTK 57 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTS-------CHHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCC-------CHHHHHHHHHHhc
Confidence 4567899999999999999999 7999999999888 6688998885433
No 78
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.47 E-value=0.0098 Score=53.02 Aligned_cols=45 Identities=20% Similarity=0.496 Sum_probs=40.3
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYED 57 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~ 57 (446)
.+.|..-|+-+|..+|..||..+|..||..|..| |+..|+.+|..
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~R-------t~~qcr~Rw~~ 102 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGR-------IGKQCRERWHN 102 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTC-------CHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCC-------CHHHHHHHHHH
Confidence 4689999999999999999999999999999877 67999998864
No 79
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=95.38 E-value=0.0079 Score=52.22 Aligned_cols=49 Identities=18% Similarity=0.342 Sum_probs=41.7
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhh
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRF 62 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~ 62 (446)
.+.|..-|+.+|..+|..||. .|..||..|..| |...|+.+|..+-++.
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~gR-------t~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGS-KWSVIAKLIPGR-------TDNAIKNRWNSSISKR 102 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCS-CHHHHTTTSTTC-------CHHHHHHHHHHTTGGG
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCC-------CHHHHHHHHHHHHHHH
Confidence 467988999999999999995 699999988887 6799999998755443
No 80
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=94.31 E-value=0.027 Score=45.41 Aligned_cols=55 Identities=20% Similarity=0.410 Sum_probs=41.2
Q ss_pred ccchhhHHHHHHHHhhhcc---------CCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhcC
Q 013304 7 EVWGTWEELLLGGAVLRHG---------TRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFYG 64 (446)
Q Consensus 7 ~~wgt~eelll~~av~Rhg---------~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~~ 64 (446)
..|+.=|=++|..+..=+- ..-|..||..|+..- +.+|+..|+.||..|+++|=.
T Consensus 5 ~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G---~~rs~~qC~~K~~nL~k~Yk~ 68 (86)
T 2ebi_A 5 ETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKG---FDRSPDMCTDKWRNLLKEFKK 68 (86)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHHHHH
Confidence 3566656666666554222 237999999999874 368999999999999999964
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=92.27 E-value=0.13 Score=54.27 Aligned_cols=64 Identities=23% Similarity=0.433 Sum_probs=52.5
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhcCCcchhHHHhhhhhhcCC
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFYGCKSLESKLETLKAERGD 81 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~~~~slq~~~~~l~~ek~~ 81 (446)
...|..-|-+++.-||..||- ||..||.-|.+| |+.+|+.-|..-.+|| .|...++.-++++..
T Consensus 380 ~~~WT~eE~~~f~~al~~yGk-dw~~IA~~VgTK-------T~~Qvk~fy~~~kkr~----~ld~il~e~e~~~~~ 443 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNK-------SVVQVKNFFVNYRRRF----NIDEVLQEWEAEHGK 443 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHSSC-------CHHHHHHHHHHTTTTT----THHHHHHHHHTC---
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhCCC-------CHHHHHHHHHHHHHHh----ChHHHHHHHHHhhCC
Confidence 568999999999999999995 999999999988 6799999998766776 588888887776654
No 82
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=85.51 E-value=0.38 Score=46.64 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=41.3
Q ss_pred cccchhhHHHHHHHHhhhccCCC-----chHHHHHHhhccCCCCCCCHHHHHHHHHHHH
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRD-----WNLVAAELRARTVCPYTVTPEMCKAHYEDLQ 59 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~-----w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~ 59 (446)
...|...|+.+|.-+|.+||... |..||.-|..| |...|+..|.-+-
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGR-------T~nsIRnRw~~~L 59 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNH-------TGNSIRHRFRVYL 59 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTS-------CHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCC-------CHHHHHHHHHHHH
Confidence 35799999999999999999975 99999999888 6689999998744
No 83
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=78.39 E-value=1.9 Score=33.62 Aligned_cols=54 Identities=15% Similarity=0.011 Sum_probs=43.2
Q ss_pred cccccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhh
Q 013304 4 EVIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRF 62 (446)
Q Consensus 4 ~~~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~ 62 (446)
.-...|..-|+=.|.-.|..+|- .|..|+..-.- ....|.-.=+.||.-|.++=
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f----~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPF----QKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCC----CTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCC----ccCcccchHHHHHHHHHhcc
Confidence 44578999999999999999998 99999965321 22347789999999998763
No 84
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.42 E-value=2.6 Score=32.23 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=38.2
Q ss_pred cccchhhHHHHHHHHhhhccCCCchHHHHH-HhhccCCCCCCCHHHHHHHHHHHH
Q 013304 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAE-LRARTVCPYTVTPEMCKAHYEDLQ 59 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~~w~~va~e-~~~r~~~~~~~t~~~C~~k~~~l~ 59 (446)
...|..-|--+.-.|+..||- +|..|+.+ |..| |+..|..-|=.-+
T Consensus 9 ~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~K-------t~~~~v~fYY~wK 55 (63)
T 2yqk_A 9 EKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNK-------ETGELITFYYYWK 55 (63)
T ss_dssp CCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTS-------CHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCC-------cHHHHHHHHhccc
Confidence 457888898999999999998 89999986 8888 6689988885443
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=68.16 E-value=5 Score=31.35 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=39.7
Q ss_pred cccccchhhHHHHHHHHhhhccCCCchHHHHH-HhhccCCCCCCCHHHHHHHHHHHHh
Q 013304 4 EVIEVWGTWEELLLGGAVLRHGTRDWNLVAAE-LRARTVCPYTVTPEMCKAHYEDLQQ 60 (446)
Q Consensus 4 ~~~~~wgt~eelll~~av~Rhg~~~w~~va~e-~~~r~~~~~~~t~~~C~~k~~~l~~ 60 (446)
.....|..-|--+.-.|+..||- ||..|+.+ |.+| |+..|-.-|-.-+.
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~K-------t~~~~v~fYY~wKk 55 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWK-------SLTSIIEYYYMWKT 55 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSS-------CHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCC-------CHHHHHHHHHhhcC
Confidence 35667888888899999999998 89999985 7777 66899988875443
No 86
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=67.13 E-value=3.2 Score=37.98 Aligned_cols=31 Identities=16% Similarity=0.366 Sum_probs=25.4
Q ss_pred cchhhHHHHHHHHhhhccCCCchHHHHHHhh
Q 013304 8 VWGTWEELLLGGAVLRHGTRDWNLVAAELRA 38 (446)
Q Consensus 8 ~wgt~eelll~~av~Rhg~~~w~~va~e~~~ 38 (446)
.|+.-++-.|.+.|.+||.++|+.|-...+.
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l 166 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDL 166 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSS
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhc
Confidence 4555589999999999999999988775553
No 87
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=59.22 E-value=8.3 Score=31.78 Aligned_cols=44 Identities=23% Similarity=0.469 Sum_probs=36.0
Q ss_pred ccccchhhHHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHH
Q 013304 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYE 56 (446)
Q Consensus 5 ~~~~wgt~eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~ 56 (446)
++..|..-|.-++--|..-|| .+|..||..|..| |...|-.-|=
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~K-------t~~~cV~~YY 85 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQHP-KNFGLIASFLERK-------TVAECVLYYY 85 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTC-------CHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCC-------CHHHHHHHHh
Confidence 356688888888889999998 5899999998888 5588887774
No 88
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=53.01 E-value=7 Score=38.22 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=23.4
Q ss_pred cchhhHHHHHHHHhhhccCCCchHHHH
Q 013304 8 VWGTWEELLLGGAVLRHGTRDWNLVAA 34 (446)
Q Consensus 8 ~wgt~eelll~~av~Rhg~~~w~~va~ 34 (446)
.|+.-|+--|.--|.+||+++|..|-+
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 477778888888899999999999875
No 89
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=52.88 E-value=9.4 Score=37.97 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=41.9
Q ss_pred ccchhh---HHHHHHHHhhhccCCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhc
Q 013304 7 EVWGTW---EELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFY 63 (446)
Q Consensus 7 ~~wgt~---eelll~~av~Rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~ 63 (446)
+|.++| +-..+..|+.+||-.+|+.||.||... |++.-+.-|..+-.||.
T Consensus 108 eGF~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~K-------t~eEV~~Y~~vFw~ry~ 160 (304)
T 1ofc_X 108 QGFTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGK-------TPEEVIEYNAVFWERCT 160 (304)
T ss_dssp SSCTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTC-------CHHHHHHHHHHHHHHGG
T ss_pred hhhcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHhHH
Confidence 455566 667788999999999999999999765 66777888999999995
No 90
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=40.40 E-value=6.4 Score=31.67 Aligned_cols=44 Identities=32% Similarity=0.459 Sum_probs=34.4
Q ss_pred cccchhhHHHHHHHHhhhccCC---CchHHHHHHhhccCCCCCCCHHHHHHHHH
Q 013304 6 IEVWGTWEELLLGGAVLRHGTR---DWNLVAAELRARTVCPYTVTPEMCKAHYE 56 (446)
Q Consensus 6 ~~~wgt~eelll~~av~Rhg~~---~w~~va~e~~~r~~~~~~~t~~~C~~k~~ 56 (446)
...|..-|.-+|--|+.-+.-. .|..||.-|..| |++.|+..|+
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGK-------T~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGR-------TPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSS-------CHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCC-------CHHHHHHHHH
Confidence 3468888999998888777543 699999988877 6688988775
No 91
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=34.00 E-value=35 Score=27.84 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=24.7
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 013304 286 DTIRSKISSHSIMSIKELFRDLLLLANN 313 (446)
Q Consensus 286 sTIKkKLesg~Y~S~~EF~~Dl~Lmf~N 313 (446)
.-|+..+.+|.|.|..|.++|...++..
T Consensus 16 ~~i~~~V~sG~Y~s~SEviR~~lR~l~~ 43 (88)
T 3kxe_C 16 AFIDSQVADGRYGSASEVIRAGLRLLEE 43 (88)
T ss_dssp HHHHHHHTTTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4688999999999999999998777765
No 92
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=24.36 E-value=95 Score=27.99 Aligned_cols=53 Identities=9% Similarity=-0.028 Sum_probs=39.1
Q ss_pred ccccchhhHHHHHHHHhhhcc--CCCchHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhh
Q 013304 5 VIEVWGTWEELLLGGAVLRHG--TRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRF 62 (446)
Q Consensus 5 ~~~~wgt~eelll~~av~Rhg--~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~ 62 (446)
-+.+|.-=|=--|.-|+.||| ...|+.|+.+.+... -|++.-+.=|+.|..++
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~-----Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVD-----KSETDLRRLGELVHNGC 60 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTT-----SCHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCC-----CCHHHHHHHHHHHHHHH
Confidence 356788888889999999999 688999998865332 26677776666666665
Done!