Query 013305
Match_columns 445
No_of_seqs 185 out of 816
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 02:30:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013305.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013305hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2922 Uncharacterized conser 100.0 2.5E-63 5.5E-68 489.4 15.0 297 1-316 16-312 (335)
2 PF05653 Mg_trans_NIPA: Magnes 100.0 6.4E-61 1.4E-65 479.9 23.1 295 2-315 3-297 (300)
3 TIGR03340 phn_DUF6 phosphonate 99.0 3.8E-08 8.1E-13 97.5 20.9 265 8-308 3-281 (281)
4 PRK02971 4-amino-4-deoxy-L-ara 99.0 1.5E-09 3.2E-14 96.7 8.3 117 6-127 2-122 (129)
5 PRK15051 4-amino-4-deoxy-L-ara 98.6 1.4E-07 3.1E-12 81.8 8.9 102 10-126 5-108 (111)
6 TIGR00776 RhaT RhaT L-rhamnose 98.6 5.6E-06 1.2E-10 82.9 20.7 224 57-311 58-289 (290)
7 PRK11453 O-acetylserine/cystei 98.6 3.4E-06 7.4E-11 84.3 18.8 208 69-311 73-288 (299)
8 TIGR00950 2A78 Carboxylate/Ami 98.6 4.6E-06 9.9E-11 80.6 18.7 207 58-305 50-259 (260)
9 PF06027 DUF914: Eukaryotic pr 98.5 1.6E-05 3.6E-10 81.4 21.9 76 53-128 75-152 (334)
10 PRK15430 putative chlorampheni 98.4 1.3E-05 2.7E-10 80.2 17.7 125 1-126 3-144 (296)
11 PRK11689 aromatic amino acid e 98.4 2.9E-05 6.4E-10 77.5 18.8 216 60-311 66-288 (295)
12 PLN00411 nodulin MtN21 family 98.3 4E-05 8.8E-10 79.3 18.6 220 68-314 91-332 (358)
13 PF10639 UPF0546: Uncharacteri 98.2 9.8E-07 2.1E-11 76.9 4.3 107 16-126 6-113 (113)
14 TIGR00817 tpt Tpt phosphate/ph 98.2 5E-05 1.1E-09 75.8 17.1 67 58-125 69-135 (302)
15 COG0697 RhaT Permeases of the 98.2 0.00011 2.4E-09 71.0 19.0 212 59-311 74-288 (292)
16 PRK11272 putative DMT superfam 98.2 5.3E-05 1.2E-09 75.5 17.2 212 59-313 73-288 (292)
17 COG2510 Predicted membrane pro 98.2 8E-06 1.7E-10 72.4 8.9 114 9-126 6-138 (140)
18 PRK10532 threonine and homoser 98.2 0.0006 1.3E-08 68.1 23.4 263 5-314 11-285 (293)
19 PTZ00343 triose or hexose phos 98.1 0.00035 7.5E-09 71.9 20.2 69 57-126 117-185 (350)
20 PF08449 UAA: UAA transporter 98.1 0.00058 1.3E-08 68.5 21.1 227 58-309 68-296 (303)
21 PF13536 EmrE: Multidrug resis 98.1 5.7E-06 1.2E-10 71.3 5.5 66 61-127 41-106 (113)
22 PRK10452 multidrug efflux syst 98.0 5.4E-05 1.2E-09 66.8 9.7 99 11-130 7-106 (120)
23 PF06800 Sugar_transport: Suga 97.9 0.00038 8.2E-09 69.4 16.0 215 57-307 44-268 (269)
24 PRK09541 emrE multidrug efflux 97.8 0.00013 2.8E-09 63.4 9.4 97 11-129 7-105 (110)
25 PRK13499 rhamnose-proton sympo 97.7 0.00089 1.9E-08 69.0 14.5 300 3-311 4-342 (345)
26 TIGR00688 rarD rarD protein. T 97.7 0.0044 9.4E-08 60.3 18.8 62 65-126 80-141 (256)
27 PF04142 Nuc_sug_transp: Nucle 97.6 0.0014 3E-08 64.4 13.6 73 59-131 21-93 (244)
28 PRK10532 threonine and homoser 97.6 0.00028 6E-09 70.5 8.6 125 5-131 147-285 (293)
29 COG2510 Predicted membrane pro 97.4 0.00088 1.9E-08 59.7 8.8 114 190-311 4-140 (140)
30 PF00893 Multi_Drug_Res: Small 97.4 0.001 2.3E-08 55.8 8.8 85 12-118 7-93 (93)
31 PF00892 EamA: EamA-like trans 97.3 0.00018 3.9E-09 60.8 2.8 68 58-125 57-124 (126)
32 PLN00411 nodulin MtN21 family 97.2 0.0012 2.6E-08 68.4 8.8 124 3-127 186-328 (358)
33 TIGR00950 2A78 Carboxylate/Ami 97.2 0.0028 6.1E-08 61.2 10.2 119 4-122 126-259 (260)
34 PRK10650 multidrug efflux syst 97.0 0.0053 1.1E-07 53.4 9.7 97 7-125 8-106 (109)
35 PRK11431 multidrug efflux syst 97.0 0.0042 9.1E-08 53.6 8.9 92 12-125 7-100 (105)
36 KOG4510 Permease of the drug/m 96.9 0.0037 8E-08 62.1 8.6 212 67-312 109-327 (346)
37 COG2076 EmrE Membrane transpor 96.8 0.0085 1.8E-07 51.8 9.1 93 11-125 7-101 (106)
38 PRK11272 putative DMT superfam 96.7 0.006 1.3E-07 60.8 8.4 121 5-126 149-284 (292)
39 PRK11689 aromatic amino acid e 96.7 0.0063 1.4E-07 60.8 8.6 118 5-125 155-285 (295)
40 PRK15051 4-amino-4-deoxy-L-ara 96.7 0.018 4E-07 49.9 10.4 80 225-311 31-110 (111)
41 TIGR03340 phn_DUF6 phosphonate 96.5 0.0021 4.5E-08 63.7 3.4 119 6-124 144-280 (281)
42 KOG2234 Predicted UDP-galactos 96.3 0.16 3.5E-06 52.3 15.6 69 58-126 95-163 (345)
43 PRK11453 O-acetylserine/cystei 96.2 0.022 4.8E-07 57.0 9.2 121 5-125 142-285 (299)
44 PRK02971 4-amino-4-deoxy-L-ara 96.1 0.091 2E-06 46.9 11.3 70 238-313 55-125 (129)
45 COG2962 RarD Predicted permeas 95.9 0.36 7.7E-06 48.7 15.7 121 7-127 8-144 (293)
46 COG0697 RhaT Permeases of the 95.6 0.022 4.7E-07 55.0 5.7 122 5-127 153-287 (292)
47 PRK09541 emrE multidrug efflux 95.6 0.15 3.3E-06 44.3 10.3 80 224-312 26-105 (110)
48 PRK15430 putative chlorampheni 95.4 0.018 3.9E-07 57.6 4.4 62 66-127 224-285 (296)
49 PRK10452 multidrug efflux syst 95.0 0.36 7.9E-06 42.6 11.1 66 242-313 41-106 (120)
50 PRK11431 multidrug efflux syst 94.5 0.33 7.1E-06 41.9 9.3 79 223-310 24-102 (105)
51 KOG1583 UDP-N-acetylglucosamin 94.5 0.88 1.9E-05 45.9 13.4 78 55-132 64-142 (330)
52 KOG4314 Predicted carbohydrate 94.3 0.88 1.9E-05 43.8 12.5 61 67-127 65-125 (290)
53 PRK10650 multidrug efflux syst 94.3 0.39 8.4E-06 41.8 9.3 78 223-309 30-107 (109)
54 KOG2765 Predicted membrane pro 94.1 0.19 4.1E-06 52.3 8.2 61 74-134 178-238 (416)
55 TIGR00776 RhaT RhaT L-rhamnose 94.0 0.073 1.6E-06 53.4 4.9 120 5-126 151-287 (290)
56 PF03151 TPT: Triose-phosphate 93.5 0.27 5.8E-06 43.6 7.2 57 68-124 94-150 (153)
57 PF13536 EmrE: Multidrug resis 93.4 0.67 1.4E-05 39.7 9.2 64 243-314 47-110 (113)
58 KOG3912 Predicted integral mem 93.2 0.67 1.5E-05 46.8 9.9 71 58-128 89-159 (372)
59 PF06027 DUF914: Eukaryotic pr 93.0 0.49 1.1E-05 48.9 9.1 130 3-133 165-311 (334)
60 COG2076 EmrE Membrane transpor 92.1 1.1 2.4E-05 38.9 8.7 77 225-310 27-103 (106)
61 PF06800 Sugar_transport: Suga 91.9 1.4 3.1E-05 44.2 10.5 76 238-316 53-128 (269)
62 PF10639 UPF0546: Uncharacteri 91.9 0.79 1.7E-05 40.2 7.6 54 249-308 59-112 (113)
63 PF00893 Multi_Drug_Res: Small 91.2 1.5 3.3E-05 36.6 8.4 58 225-285 26-83 (93)
64 PF00892 EamA: EamA-like trans 90.8 0.31 6.7E-06 40.8 4.0 60 242-308 65-124 (126)
65 TIGR00803 nst UDP-galactose tr 89.8 1.6 3.5E-05 41.5 8.5 122 3-124 82-221 (222)
66 TIGR00817 tpt Tpt phosphate/ph 89.3 0.29 6.2E-06 48.9 2.9 56 70-125 236-291 (302)
67 KOG2766 Predicted membrane pro 89.1 4.8 0.0001 40.4 11.1 57 73-129 96-152 (336)
68 COG5006 rhtA Threonine/homoser 88.9 27 0.00059 35.1 18.5 84 224-311 202-286 (292)
69 PF06379 RhaT: L-rhamnose-prot 88.0 17 0.00036 37.8 14.6 235 67-309 85-339 (344)
70 COG4975 GlcU Putative glucose 86.7 0.48 1E-05 46.9 2.6 223 52-311 53-286 (288)
71 COG3169 Uncharacterized protei 86.7 2.8 6.1E-05 35.9 6.8 105 1-124 5-112 (116)
72 COG1742 Uncharacterized conser 85.1 5 0.00011 34.7 7.6 48 83-131 60-107 (109)
73 KOG4831 Unnamed protein [Funct 83.9 0.6 1.3E-05 40.5 1.5 77 49-126 46-124 (125)
74 COG5006 rhtA Threonine/homoser 82.1 3 6.4E-05 41.7 5.8 124 5-130 147-285 (292)
75 PRK02237 hypothetical protein; 79.4 6.4 0.00014 34.3 6.2 48 83-131 61-108 (109)
76 PF05653 Mg_trans_NIPA: Magnes 78.0 9.2 0.0002 38.8 8.1 118 189-317 7-129 (300)
77 PF08449 UAA: UAA transporter 78.0 4.4 9.5E-05 40.6 5.8 120 4-124 152-294 (303)
78 PTZ00343 triose or hexose phos 77.7 3.9 8.5E-05 42.1 5.4 50 75-124 296-345 (350)
79 PF07857 DUF1632: CEO family ( 76.3 8.4 0.00018 38.4 7.1 49 266-315 86-139 (254)
80 PF02694 UPF0060: Uncharacteri 75.9 6.4 0.00014 34.2 5.3 47 83-130 59-105 (107)
81 PRK13499 rhamnose-proton sympo 74.0 12 0.00025 39.1 7.7 70 240-310 83-153 (345)
82 KOG1580 UDP-galactose transpor 70.0 58 0.0013 32.6 10.9 209 63-307 93-310 (337)
83 KOG1581 UDP-galactose transpor 69.6 33 0.00071 35.3 9.4 75 57-132 86-160 (327)
84 PF04342 DUF486: Protein of un 64.6 19 0.00041 31.3 5.7 93 7-124 3-105 (108)
85 TIGR00803 nst UDP-galactose tr 63.2 1.2E+02 0.0026 28.7 11.7 57 244-307 165-221 (222)
86 PF04142 Nuc_sug_transp: Nucle 62.5 67 0.0014 31.6 10.0 112 4-117 112-243 (244)
87 COG4975 GlcU Putative glucose 62.2 11 0.00024 37.6 4.4 69 241-312 70-138 (288)
88 KOG1443 Predicted integral mem 60.8 81 0.0017 32.6 10.3 55 73-127 102-156 (349)
89 PF04657 DUF606: Protein of un 59.1 20 0.00043 32.2 5.2 66 59-124 68-138 (138)
90 KOG1441 Glucose-6-phosphate/ph 58.7 7 0.00015 40.2 2.4 69 58-127 87-155 (316)
91 KOG2765 Predicted membrane pro 52.7 51 0.0011 34.9 7.5 124 4-127 245-390 (416)
92 COG4858 Uncharacterized membra 49.3 69 0.0015 30.8 7.2 91 5-111 124-220 (226)
93 PF06609 TRI12: Fungal trichot 44.8 3.7E+02 0.0079 30.3 13.2 58 50-108 102-160 (599)
94 KOG1582 UDP-galactose transpor 39.0 3.2E+02 0.007 28.1 10.4 48 91-138 142-189 (367)
95 KOG1442 GDP-fucose transporter 36.1 4.7 0.0001 40.8 -2.8 59 65-123 112-170 (347)
96 PF11970 Git3_C: G protein-cou 35.5 59 0.0013 26.4 3.9 47 258-304 14-60 (76)
97 PF15048 OSTbeta: Organic solu 35.2 24 0.00052 31.5 1.8 28 284-311 30-57 (125)
98 PF11368 DUF3169: Protein of u 35.1 3E+02 0.0064 26.9 9.6 18 189-206 10-27 (248)
99 KOG4831 Unnamed protein [Funct 33.8 2.4E+02 0.0052 24.8 7.5 75 223-307 48-122 (125)
100 PF06570 DUF1129: Protein of u 33.1 2E+02 0.0044 27.3 7.9 56 55-110 143-204 (206)
101 PF01306 LacY_symp: LacY proto 32.9 4.4E+02 0.0096 28.1 11.1 75 84-158 143-230 (412)
102 KOG1583 UDP-N-acetylglucosamin 31.2 87 0.0019 32.0 5.1 35 92-126 279-313 (330)
103 PF08229 SHR3_chaperone: ER me 27.0 1.9E+02 0.004 27.9 6.4 75 237-311 72-153 (196)
104 PF06624 RAMP4: Ribosome assoc 26.1 69 0.0015 25.3 2.7 21 56-76 38-60 (63)
105 KOG1580 UDP-galactose transpor 25.8 46 0.001 33.2 2.1 41 91-131 277-317 (337)
106 TIGR00688 rarD rarD protein. T 25.6 1.5E+02 0.0034 28.4 5.8 56 247-309 86-141 (256)
107 KOG2922 Uncharacterized conser 25.5 38 0.00082 35.0 1.5 125 189-324 21-150 (335)
108 PF08173 YbgT_YccB: Membrane b 24.5 96 0.0021 20.7 2.7 19 3-21 5-23 (28)
109 KOG3491 Predicted membrane pro 24.5 1.5E+02 0.0033 23.2 4.2 20 57-76 39-60 (65)
110 PF04531 Phage_holin_1: Bacter 23.3 3.5E+02 0.0075 22.3 6.6 20 53-72 8-27 (84)
111 COG3785 Uncharacterized conser 23.0 30 0.00064 30.1 0.2 41 375-429 13-53 (116)
112 TIGR02106 cyd_oper_ybgT cyd op 23.0 1E+02 0.0022 20.9 2.7 20 3-22 5-24 (30)
113 PF00909 Ammonium_transp: Ammo 22.0 4.9E+02 0.011 27.3 9.1 37 247-283 294-330 (399)
114 COG5522 Predicted integral mem 20.9 2.1E+02 0.0046 28.0 5.4 52 67-118 102-162 (236)
No 1
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.5e-63 Score=489.44 Aligned_cols=297 Identities=24% Similarity=0.400 Sum_probs=274.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhhh
Q 013305 1 MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAA 80 (445)
Q Consensus 1 m~~~~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~~G~~l~~~g~il~~~Al~~ap 80 (445)
+++|++|+++|+.||++++.+.++|||+|+|.++...++.. .++ +|++.|+||+|++.|++|+++||.||+|||
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~--gg~----~yl~~~~Ww~G~ltm~vGei~NFaAYaFAP 89 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGE--GGY----GYLKEPLWWAGMLTMIVGEIANFAAYAFAP 89 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHhhhcccccC--CCc----chhhhHHHHHHHHHHHHHhHhhHHHHhhch
Confidence 46899999999999999999999999999998765444322 233 345679999999999999999999999999
Q ss_pred hHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCCCCCCHHHHHHHhcchhHHHHHHHHHHH
Q 013305 81 QSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFI 160 (445)
Q Consensus 81 ~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~~~~t~~eL~~~~~~~~fl~y~~i~ivi 160 (445)
+++|+|||++++++++++|+++|||+++..+.+||++|++|.+++|.|+|++++..|++|+.+++.+|+|++|+.+.+++
T Consensus 90 asLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fliy~~~iil~ 169 (335)
T KOG2922|consen 90 ASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLVYVIIIILI 169 (335)
T ss_pred HhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Q 013305 161 VAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFST 240 (445)
Q Consensus 161 v~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~aK~~~~ll~~ti~g~~qf~~w~tY~llv~~v~~ 240 (445)
++++++.++.++ |+. +.++|..+|+++|++||+++|+++.+++++++|++|+.+|+||+++++++.|
T Consensus 170 ~~il~~~~~p~~------g~t-------nilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~ 236 (335)
T KOG2922|consen 170 VLILIFFYAPRY------GQT-------NILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATC 236 (335)
T ss_pred HHHHheeecccc------ccc-------ceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence 777666555432 444 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhheecCCCCCCC
Q 013305 241 AGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKGG 316 (445)
Q Consensus 241 ~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~~~~ 316 (445)
+.+|++||||||++||+++|.|+|||+||+++|++|.|+|+||++++..++.++++|+++++.|+++|.+.++.+.
T Consensus 237 ~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd~~~ 312 (335)
T KOG2922|consen 237 VSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKDMEI 312 (335)
T ss_pred HHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeeccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988775543
No 2
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=6.4e-61 Score=479.86 Aligned_cols=295 Identities=31% Similarity=0.536 Sum_probs=267.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhhhh
Q 013305 2 GEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQ 81 (445)
Q Consensus 2 ~~~~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~~G~~l~~~g~il~~~Al~~ap~ 81 (445)
.+|+||+++|++||++++.|.++|||+|.|.++.+.++ ....++++++|+||+|+++|++|++++++||+|+|+
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~------~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~ 76 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRA------GSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPA 76 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc------cchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhH
Confidence 36899999999999999999999999999887643321 112457899999999999999999999999999999
Q ss_pred HHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCCCCCCHHHHHHHhcchhHHHHHHHHHHHH
Q 013305 82 SLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIV 161 (445)
Q Consensus 82 slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~~~~t~~eL~~~~~~~~fl~y~~i~iviv 161 (445)
++|||+|++++++|++++++++|||+++++++|++++++|+++++.++|++++.+|++|+.+++.+|.|+.|+.+..++.
T Consensus 77 slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~ 156 (300)
T PF05653_consen 77 SLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLI 156 (300)
T ss_pred HHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988776655
Q ss_pred HHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Q 013305 162 AIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTA 241 (445)
Q Consensus 162 ~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~aK~~~~ll~~ti~g~~qf~~w~tY~llv~~v~~~ 241 (445)
+.+.+..+++ .|++ +.+.|..+||++|++|++++|+++..++++++|+|||.+|.+|++++++++++
T Consensus 157 ~~L~~~~~~r------~g~~-------~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~ 223 (300)
T PF05653_consen 157 LILIFFIKPR------YGRR-------NILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTA 223 (300)
T ss_pred HHHHHhhcch------hccc-------ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHH
Confidence 4443333321 1322 34679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhheecCCCCCC
Q 013305 242 GFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKG 315 (445)
Q Consensus 242 l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~~~ 315 (445)
+.|++||||||++||+++|+|+|||+||++++++|+++|||+.++++++++++.+|++++++||++|+.+++++
T Consensus 224 ~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~~ 297 (300)
T PF05653_consen 224 VLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDKE 297 (300)
T ss_pred HHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887654
No 3
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.02 E-value=3.8e-08 Score=97.45 Aligned_cols=265 Identities=11% Similarity=0.031 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccccC-CCCCC---CCC---c---cccccccccchh---HHHHHHHHHHHHHHHH
Q 013305 8 AFINLVGSIAINFGTNLLKLGHIEREKHST-LDSDG---TNG---K---HSLKPIVHYHSW---RVGILVFLLGNCLNFI 74 (445)
Q Consensus 8 i~Lal~ss~l~a~G~~lqK~a~~~~~~~~~-~~~~g---~~g---~---~~~~~ll~~p~W---~~G~~l~~~g~il~~~ 74 (445)
.++.+.++++.+..+.+.|+...++..-.. ..--. ... . ....+..++..| ..+.........+.+.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQ 82 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999966443211000 00000 000 0 000001111122 2233334556677778
Q ss_pred HHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCCCCCCHHHHHHHhcchhHHHHH
Q 013305 75 SFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYC 154 (445)
Q Consensus 75 Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~~~~t~~eL~~~~~~~~fl~y~ 154 (445)
++...|.+.++|+...+-++..+++.+++||++++++|.|.++++.|+.++.. +. ....+. ... .+.
T Consensus 83 a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~--~~-~~~~~~---------~g~-~~~ 149 (281)
T TIGR03340 83 AYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL--SR-FAQHRR---------KAY-AWA 149 (281)
T ss_pred HHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--cc-ccccch---------hHH-HHH
Confidence 99999999999999999999999999999999999999999999999987653 21 111110 111 122
Q ss_pred HHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccCcc-chhHHHHHH
Q 013305 155 LILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQ-LHSWFTYSM 233 (445)
Q Consensus 155 ~i~iviv~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~aK~~~~ll~~ti~g~~q-f~~w~tY~l 233 (445)
.+..+..+......|+... +.+ ... ....+...+-++++.-..... ... .+... ...+..+.+
T Consensus 150 l~aal~~a~~~i~~k~~~~-----~~~-~~~---~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~ 213 (281)
T TIGR03340 150 LAAALGTAIYSLSDKAAAL-----GVP-AFY---SALGYLGIGFLAMGWPFLLLY----LKR---HGRSMFPYARQILPS 213 (281)
T ss_pred HHHHHHHHHhhhhcccccc-----chh-ccc---ccHHHHHHHHHHHHHHHHHHH----HHH---hccchhhhHHHHHHH
Confidence 2111111111111222110 000 000 111111111111111111000 000 11111 111222222
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhhee
Q 013305 234 LLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLL 308 (445)
Q Consensus 234 lv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lL 308 (445)
+....+.......+.++++++.+++.+.+..|. .++++++.|.++++|..+ . .-.+|..++++|+++|
T Consensus 214 ~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l-~pv~a~l~g~~~lgE~~~--~----~~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 214 ATLGGLMIGGAYALVLWAMTRLPVATVVALRNT-SIVFAVVLGIWFLNERWY--L----TRLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCceEEEeeccc-HHHHHHHHHHHHhCCCcc--H----HHHHHHHHHHHhHHhC
Confidence 333333333344456999999999999999876 589999999999999753 2 2456778888888764
No 4
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.99 E-value=1.5e-09 Score=96.74 Aligned_cols=117 Identities=16% Similarity=0.103 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccc--hhHHHHHHHHHHHHHHHHHHhhhhhHH
Q 013305 6 IGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYH--SWRVGILVFLLGNCLNFISFGYAAQSL 83 (445)
Q Consensus 6 IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p--~W~~G~~l~~~g~il~~~Al~~ap~sl 83 (445)
+|.++.+++.++.+.||.+.|++..+.+..+.. ...........+| .-+.|+.+++++.++|..++...|+++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~-----~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~ 76 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHA-----WDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSR 76 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccch-----hHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 477889999999999999999998764321100 0000111234567 788999999999999999999999999
Q ss_pred HhhhchhhHHHHHHHHHH--HhccccccchhhhHHHhhhceeeEEe
Q 013305 84 LAALGSVQFVSNIAFSYF--VFNKMVTVKVLVATAFIVLGNIFLVS 127 (445)
Q Consensus 84 V~PLgal~lv~~~l~a~~--~l~E~~~~~~~~G~~lii~G~~liv~ 127 (445)
..|+-+..+++..+++.. ++||+++..+++|+++|++|++++..
T Consensus 77 Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 77 AYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 999999998888888875 79999999999999999999987653
No 5
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.64 E-value=1.4e-07 Score=81.79 Aligned_cols=102 Identities=17% Similarity=0.116 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhHHHH--HHHHHHHHHHHHHHhhhhhHHHhhh
Q 013305 10 INLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGI--LVFLLGNCLNFISFGYAAQSLLAAL 87 (445)
Q Consensus 10 Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~~G~--~l~~~g~il~~~Al~~ap~slV~PL 87 (445)
+-+++.++-..|+.+.|++.+..+. +.... ++.++.+. ..|.++..++..++...|+++.+|+
T Consensus 5 ~l~~ai~~ev~g~~~lK~s~~~~~~----------~~~~~-----~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~ 69 (111)
T PRK15051 5 TLVFASLLSVAGQLCQKQATRPVAI----------GKRRK-----HIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPM 69 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCc----------chhhh-----HHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHH
Confidence 4556777888999999998533210 11000 12334544 6678899999999999999999999
Q ss_pred chhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEE
Q 013305 88 GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (445)
Q Consensus 88 gal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv 126 (445)
.+++++++.+++.+++||+++.++++|.++++.|++++.
T Consensus 70 ~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 70 LSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999987654
No 6
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.61 E-value=5.6e-06 Score=82.90 Aligned_cols=224 Identities=16% Similarity=0.125 Sum_probs=139.0
Q ss_pred hhHHHHHH---HHHHHHHHHHHHhhhhhHHHhhhch-hhHHHHHHHHHHHhccccccch----hhhHHHhhhceeeEEee
Q 013305 57 SWRVGILV---FLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKV----LVATAFIVLGNIFLVSF 128 (445)
Q Consensus 57 ~W~~G~~l---~~~g~il~~~Al~~ap~slV~PLga-l~lv~~~l~a~~~l~E~~~~~~----~~G~~lii~G~~liv~~ 128 (445)
.|..|++. +..|+++.+.|.....+++-.|+.. ++++++.+.+.+++||+.++++ ++|++++++|++++...
T Consensus 58 ~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 58 IFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 45667777 8899999999999999999999999 8999999999999999999999 99999999998877654
Q ss_pred cCCCCCCCCHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHH
Q 013305 129 GNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFA 208 (445)
Q Consensus 129 g~~~~~~~t~~eL~~~~~~~~fl~y~~i~iviv~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~a 208 (445)
.+++. ..++. ...+.=+.+..+..+..+......|.-+ .++ ....+....|++.+-.+++.
T Consensus 138 ~~~~~---~~~~~---~~~~~Gi~~~l~sg~~y~~~~~~~~~~~----~~~---------~~~~~~~~~g~~~~~~~~~~ 198 (290)
T TIGR00776 138 KDKSA---GIKSE---FNFKKGILLLLMSTIGYLVYVVVAKAFG----VDG---------LSVLLPQAIGMVIGGIIFNL 198 (290)
T ss_pred ccccc---ccccc---cchhhHHHHHHHHHHHHHHHHHHHHHcC----CCc---------ceehhHHHHHHHHHHHHHHH
Confidence 32211 11110 0111111222222211111111223211 011 01122233344433333333
Q ss_pred HHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCCh
Q 013305 209 KSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDA 288 (445)
Q Consensus 209 K~~~~ll~~ti~g~~qf~~w~tY~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~ 288 (445)
.-. + . ..+.....+..++..+.. ..+..+...+++.+......++.....++++++.|+.+|+|.. ++
T Consensus 199 ~~~----~---~--~~~~~~~~~~~~~~Gi~~-~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~--~~ 266 (290)
T TIGR00776 199 GHI----L---A--KPLKKYAILLNILPGLMW-GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKK--TK 266 (290)
T ss_pred HHh----c---c--cchHHHHHHHHHHHHHHH-HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCC--Cc
Confidence 220 1 0 112222333333344444 5555555677774555556677777779999999999999986 46
Q ss_pred HHHHHHHHHHHHHHHhhheecCC
Q 013305 289 LRATMFILGTASVFIGISLLAPD 311 (445)
Q Consensus 289 ~~~~~~~~G~~vi~~GV~lLs~~ 311 (445)
.++..+.+|+++++.|+.+++-.
T Consensus 267 ~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 267 REMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred ceeehhHHHHHHHHHHHHHHhcc
Confidence 78888999999999999887643
No 7
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.60 E-value=3.4e-06 Score=84.31 Aligned_cols=208 Identities=14% Similarity=0.151 Sum_probs=114.5
Q ss_pred HHHHHHHHhh-hhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCCCCCCHHHHHHHhcc
Q 013305 69 NCLNFISFGY-AAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSN 147 (445)
Q Consensus 69 ~il~~~Al~~-ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~~~~t~~eL~~~~~~ 147 (445)
..+.+.++.+ .|....+-+..+.-++..+++++++|||+++++++|+++.++|+.++... ..+....+ .
T Consensus 73 ~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~-~~~~~~~~---------~ 142 (299)
T PRK11453 73 FAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED-SLNGQHVA---------M 142 (299)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc-cCCCcchh---------H
Confidence 3344566666 47777777777788899999999999999999999999999998877631 11111100 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccCc----
Q 013305 148 ITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGY---- 223 (445)
Q Consensus 148 ~~fl~y~~i~iviv~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~aK~~~~ll~~ti~g~~---- 223 (445)
.+ ..+..+..+..++.....|+-. ++.... ..+.+.....++++.-... .+ .+. ++.+
T Consensus 143 ~G-~~l~l~aal~~a~~~v~~~~~~-------~~~~~~---~~~~~~~~~~~~~~~~~~~---~~-~~~---~~~~~~~~ 204 (299)
T PRK11453 143 LG-FMLTLAAAFSWACGNIFNKKIM-------SHSTRP---AVMSLVVWSALIPIIPFFV---AS-LIL---DGSATMIH 204 (299)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHh-------cccCcc---chhHHHHHHHHHHHHHHHH---HH-HHh---cCchhhhh
Confidence 11 1122111222222111222210 000000 1112222222222211110 00 000 1110
Q ss_pred --cchhHHHHH-HHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHH
Q 013305 224 --QLHSWFTYS-MLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTAS 300 (445)
Q Consensus 224 --qf~~w~tY~-llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~v 300 (445)
...++..+. ++...+++...+....++++++.++..+.++ ....++++++.|.++++|... .. ..+|.++
T Consensus 205 ~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~-~~l~Pv~a~~~~~l~lgE~~~--~~----~~iG~~l 277 (299)
T PRK11453 205 SLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPL-SLLVPVVGLASAALLLDERLT--GL----QFLGAVL 277 (299)
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHHHHhCCCcc--HH----HHHHHHH
Confidence 011233332 3333445566666677999999999877775 558899999999999999743 33 3577788
Q ss_pred HHHhhheecCC
Q 013305 301 VFIGISLLAPD 311 (445)
Q Consensus 301 i~~GV~lLs~~ 311 (445)
+++|+++....
T Consensus 278 I~~gv~l~~~~ 288 (299)
T PRK11453 278 IMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHhcc
Confidence 88888876543
No 8
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.58 E-value=4.6e-06 Score=80.64 Aligned_cols=207 Identities=16% Similarity=0.113 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCCCCCC
Q 013305 58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYT 137 (445)
Q Consensus 58 W~~G~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~~~~t 137 (445)
-..|.+.+.+.+.+.+.|+.+.|.+...++..+.=+++.+++.+++|||++++++.|+++.++|+.++...+ +...+
T Consensus 50 ~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~---~~~~~ 126 (260)
T TIGR00950 50 LLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG---NLSIN 126 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC---ccccc
Confidence 356666677888888999999999999999999999999999999999999999999999999998875422 11100
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHH--HHHHhhhhhHHHHHHHHHHHHH
Q 013305 138 PEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSY--AIVSGAVGSFSVLFAKSLSNLL 215 (445)
Q Consensus 138 ~~eL~~~~~~~~fl~y~~i~iviv~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y--~~~sGllgg~svl~aK~~~~ll 215 (445)
..+ ..+..+..+..+......|+.... .+.. ....+ ....| +.. +..-.
T Consensus 127 ---------~~G-~~~~l~a~~~~a~~~~~~k~~~~~---~~~~-------~~~~~~~~~~~~---~~~-l~~~~----- 177 (260)
T TIGR00950 127 ---------PAG-LLLGLGSGISFALGTVLYKRLVKK---EGPE-------LLQFTGWVLLLG---ALL-LLPFA----- 177 (260)
T ss_pred ---------HHH-HHHHHHHHHHHHHHHHHHhHHhhc---CCch-------HHHHHHHHHHHH---HHH-HHHHH-----
Confidence 011 112222222222211222321100 0000 00111 11111 111 11100
Q ss_pred HHHhccCccchhHHHHH-HHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHH
Q 013305 216 RLAMSNGYQLHSWFTYS-MLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMF 294 (445)
Q Consensus 216 ~~ti~g~~qf~~w~tY~-llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~ 294 (445)
.+.++....++..+. ++...+++........++++++.++..+..+.+ ..++++++.+.++++|.. ++. .
T Consensus 178 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~ll~~~~~~E~~--~~~----~ 248 (260)
T TIGR00950 178 --WFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILAL-AEPLVALLLGLLILGETL--SLP----Q 248 (260)
T ss_pred --HhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH-HHHHHHHHHHHHHhCCCC--CHH----H
Confidence 012222112333443 222233333333334489999999887777655 889999999999999964 343 3
Q ss_pred HHHHHHHHHhh
Q 013305 295 ILGTASVFIGI 305 (445)
Q Consensus 295 ~~G~~vi~~GV 305 (445)
..|.++++.|+
T Consensus 249 ~~G~~li~~g~ 259 (260)
T TIGR00950 249 LIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHhc
Confidence 45666666665
No 9
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.53 E-value=1.6e-05 Score=81.43 Aligned_cols=76 Identities=12% Similarity=0.243 Sum_probs=64.8
Q ss_pred cccchhHHHHH--HHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEee
Q 013305 53 VHYHSWRVGIL--VFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSF 128 (445)
Q Consensus 53 l~~p~W~~G~~--l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~ 128 (445)
+++|.|.-=++ +.+.++.+...||.+-+++-++=|...+++++++++.++||||.++.+++|+++|+.|+++++..
T Consensus 75 ~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 75 LKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS 152 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence 45555543332 23678888899999999999999999999999999999999999999999999999998876654
No 10
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.42 E-value=1.3e-05 Score=80.20 Aligned_cols=125 Identities=10% Similarity=0.003 Sum_probs=86.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC-CC--CC----------CCccccccccccchh----HHHHH
Q 013305 1 MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD-SD--GT----------NGKHSLKPIVHYHSW----RVGIL 63 (445)
Q Consensus 1 m~~~~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~-~~--g~----------~g~~~~~~ll~~p~W----~~G~~ 63 (445)
|.....|++++++++++.+....+-|... +-+....-. +. +. .+....++..+++.+ ..|..
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPAYFKLIY-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV 81 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence 55667789999999998888888887542 100000000 00 00 000000000111222 25566
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEE
Q 013305 64 VFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (445)
Q Consensus 64 l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv 126 (445)
.+.+...+.+.++...|.+...-+..+.=++..+++.+++|||+++++|.|.++..+|++++.
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 677788999999999999999999999989999999999999999999999999999998764
No 11
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.37 E-value=2.9e-05 Score=77.55 Aligned_cols=216 Identities=18% Similarity=0.105 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh----hhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCCCC
Q 013305 60 VGILVFLLGNCLNFISFGYA----AQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPV 135 (445)
Q Consensus 60 ~G~~l~~~g~il~~~Al~~a----p~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~~~ 135 (445)
.|.+.+.....+.+.++.++ +.+...-+..+.=++..+++++++|||++++++.|+++..+|+.++....+ .
T Consensus 66 ~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~----~ 141 (295)
T PRK11689 66 AGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDN----G 141 (295)
T ss_pred HHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCc----c
Confidence 33333444445555555443 445555666777789999999999999999999999999999987764211 0
Q ss_pred CCHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 013305 136 YTPEQLAEKY-SNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNL 214 (445)
Q Consensus 136 ~t~~eL~~~~-~~~~fl~y~~i~iviv~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~aK~~~~l 214 (445)
.+.+++.... .++.=..+..+..+..+......|+-. ++. .++.+... .++..... ...
T Consensus 142 ~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~-------~~~------~~~~~~~~---~~~~~l~~----~~~ 201 (295)
T PRK11689 142 LSLAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYA-------RGK------NGITLFFI---LTALALWI----KYF 201 (295)
T ss_pred chhhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhcc-------CCC------CchhHHHH---HHHHHHHH----HHH
Confidence 1111110000 011001111111111111111223211 110 01111111 11111111 001
Q ss_pred HHHHhccCc-cchhHHHHHHHHH-HHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHH
Q 013305 215 LRLAMSNGY-QLHSWFTYSMLLL-FFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRAT 292 (445)
Q Consensus 215 l~~ti~g~~-qf~~w~tY~llv~-~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~ 292 (445)
. .+.. .-.++..+..++. .+.+.+. ..+.|+++++.+++.+.+. .-..++++++.|.++++|..+ +.
T Consensus 202 ~----~~~~~~~~~~~~~~~l~~~~~~t~~~-~~l~~~al~~~~a~~~s~~-~~l~Pv~a~i~~~~~lgE~~~--~~--- 270 (295)
T PRK11689 202 L----SPQPAMVFSLPAIIKLLLAAAAMGFG-YAAWNVGILHGNMTLLATA-SYFTPVLSAALAALLLSTPLS--FS--- 270 (295)
T ss_pred H----hcCccccCCHHHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHH-HHhHHHHHHHHHHHHhCCCCc--HH---
Confidence 1 1211 1122333332222 2333333 3445999999998865555 457899999999999999743 32
Q ss_pred HHHHHHHHHHHhhheecCC
Q 013305 293 MFILGTASVFIGISLLAPD 311 (445)
Q Consensus 293 ~~~~G~~vi~~GV~lLs~~ 311 (445)
..+|+++++.|+++....
T Consensus 271 -~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 271 -FWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred -HHHHHHHHHHhHHHHhhh
Confidence 457888888888765443
No 12
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.31 E-value=4e-05 Score=79.26 Aligned_cols=220 Identities=11% Similarity=0.167 Sum_probs=116.5
Q ss_pred HHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHH------hccccccchhhhHHHhhhceeeEEeecCCC------CCC
Q 013305 68 GNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFV------FNKMVTVKVLVATAFIVLGNIFLVSFGNHQ------SPV 135 (445)
Q Consensus 68 g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~------l~E~~~~~~~~G~~lii~G~~liv~~g~~~------~~~ 135 (445)
.+.+.+.++.+.+.+...=+..+.=++.++++.++ +|||+++++++|++++.+|+.++...+... ++.
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~ 170 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY 170 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence 33456789999999999999999999999999999 699999999999999999998765422210 000
Q ss_pred CCHHHHH--HHhcchhHHHH-HHHHHHHHH--HHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHHHH
Q 013305 136 YTPEQLA--EKYSNITFLVY-CLILIFIVA--IYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKS 210 (445)
Q Consensus 136 ~t~~eL~--~~~~~~~fl~y-~~i~iviv~--l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~aK~ 210 (445)
.+..+.. ....+..++.- +.++...++ +...+.|+-.+ +.+. ...+....+++++.-....
T Consensus 171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~---~~~~---------~~~~t~~~~~~~~~~~~~~-- 236 (358)
T PLN00411 171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMS---EYPA---------AFTVSFLYTVCVSIVTSMI-- 236 (358)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCc---------HhHHHHHHHHHHHHHHHHH--
Confidence 0000000 00000111111 111111111 11112232110 0000 0111112222222211110
Q ss_pred HHHHHHHHhccC--cc-chhH--HHHHHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhccccc
Q 013305 211 LSNLLRLAMSNG--YQ-LHSW--FTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQV 285 (445)
Q Consensus 211 ~~~ll~~ti~g~--~q-f~~w--~tY~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~ 285 (445)
+ .+. ++. .. ...| ..+.++...+++.+ -..+.|+++++-+++. ..++.-.-++++++.|.++++|...
T Consensus 237 -~-l~~---~~~~~~~~~~~~~~~~~~i~y~~i~t~l-ay~lw~~~v~~~ga~~-as~~~~L~PV~a~llg~l~LgE~lt 309 (358)
T PLN00411 237 -G-LVV---EKNNPSVWIIHFDITLITIVTMAIITSV-YYVIHSWTVRHKGPLY-LAIFKPLSILIAVVMGAIFLNDSLY 309 (358)
T ss_pred -H-HHH---ccCCcccceeccchHHHHHHHHHHHHHH-HHHHHHHHHhccCchH-HHHHHhHHHHHHHHHHHHHhCCCCc
Confidence 0 111 111 11 1111 11222222222332 2334699999988884 4555668899999999999999753
Q ss_pred CChHHHHHHHHHHHHHHHhhheecCCCCC
Q 013305 286 FDALRATMFILGTASVFIGISLLAPDESK 314 (445)
Q Consensus 286 ~~~~~~~~~~~G~~vi~~GV~lLs~~~~~ 314 (445)
+. -++|.++++.|+++..+.+.+
T Consensus 310 --~~----~~iG~~LIl~Gv~l~~~~~~~ 332 (358)
T PLN00411 310 --LG----CLIGGILITLGFYAVMWGKAN 332 (358)
T ss_pred --HH----HHHHHHHHHHHHHHHHhhhhh
Confidence 33 447888999999997765443
No 13
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=98.25 E-value=9.8e-07 Score=76.89 Aligned_cols=107 Identities=20% Similarity=0.248 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhc-hhhHHH
Q 013305 16 IAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALG-SVQFVS 94 (445)
Q Consensus 16 ~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~~G~~l~~~g~il~~~Al~~ap~slV~PLg-al~lv~ 94 (445)
++-+..+-+.||+....++...+ .+-....+.+++||..+++++++..|.+.-+..++-+|+|+..|+. ++++++
T Consensus 6 ~~WG~Tnpfik~g~~~~~~~~~~----~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvf 81 (113)
T PF10639_consen 6 ILWGCTNPFIKRGSSGLEKVKAS----LQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVF 81 (113)
T ss_pred HHhcCchHHHHHHHhhcCCccch----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHH
Confidence 34456677888887654321110 0012334568899999999999999999999999999999999995 999999
Q ss_pred HHHHHHHHhccccccchhhhHHHhhhceeeEE
Q 013305 95 NIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (445)
Q Consensus 95 ~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv 126 (445)
+++.++++.+|..+++.++|+.+++.|+.+.+
T Consensus 82 T~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lcv 113 (113)
T PF10639_consen 82 TALTGWLLGEEVISRRTWLGMALILAGVALCV 113 (113)
T ss_pred HHHHHHHhcCcccchhHHHHHHHHHcCeeeeC
Confidence 99999777667777888999999999988753
No 14
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.24 E-value=5e-05 Score=75.84 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeE
Q 013305 58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL 125 (445)
Q Consensus 58 W~~G~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~li 125 (445)
...|+. +.+...++..++.+.+.+..+-+.+++-++..+++++++|||++++++.|.+++++|+.+.
T Consensus 69 ~~~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 69 LPVAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 456666 5678888999999999999999999999999999999999999999999999999999754
No 15
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.24 E-value=0.00011 Score=71.00 Aligned_cols=212 Identities=15% Similarity=0.159 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHH-HHhccccccchhhhHHHhhhceeeEEeecCCCCCCCC
Q 013305 59 RVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSY-FVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYT 137 (445)
Q Consensus 59 ~~G~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~-~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~~~~t 137 (445)
..|...+..+..+.+.++...+.+..+++.+..-++..+++. +++|||++++++.|..+...|+.++...+..+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~-- 151 (292)
T COG0697 74 LLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGIL-- 151 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhH--
Confidence 345555567888888999999999999999999999999997 77799999999999999999988776543322211
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHH-HHHHHhhhhhHHHHHHHHHHHHHH
Q 013305 138 PEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFS-YAIVSGAVGSFSVLFAKSLSNLLR 216 (445)
Q Consensus 138 ~~eL~~~~~~~~fl~y~~i~iviv~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~-y~~~sGllgg~svl~aK~~~~ll~ 216 (445)
...-..+.....+..++.....|+- .+.. ...... +... ...... +.
T Consensus 152 ---------~~~g~~~~l~a~~~~a~~~~~~~~~-------~~~~----~~~~~~~~~~~----~~~~~~--------~~ 199 (292)
T COG0697 152 ---------SLLGLLLALAAALLWALYTALVKRL-------SRLG----PVTLALLLQLL----LALLLL--------LL 199 (292)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHh-------cCCC----hHHHHHHHHHH----HHHHHH--------HH
Confidence 0001112222222222211122211 0000 001111 1111 001000 00
Q ss_pred HHhccCccchhHHHHHHHHH-HHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHH
Q 013305 217 LAMSNGYQLHSWFTYSMLLL-FFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFI 295 (445)
Q Consensus 217 ~ti~g~~qf~~w~tY~llv~-~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~ 295 (445)
......+....+..+..++. .++....-..+.+++++..++..+.+.. ...++.+++.+.++++|.-+ .. ..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~l~~~e~~~--~~----~~ 272 (292)
T COG0697 200 FFLSGFGAPILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLS-LLEPVFAALLGVLLLGEPLS--PA----QL 272 (292)
T ss_pred HHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH-HHHHHHHHHHHHHHhCCCCc--HH----HH
Confidence 01111111122333332222 2222223345568999999999877776 67777888899999999743 33 33
Q ss_pred HHHHHHHHhhheecCC
Q 013305 296 LGTASVFIGISLLAPD 311 (445)
Q Consensus 296 ~G~~vi~~GV~lLs~~ 311 (445)
+|.++++.|+.+...+
T Consensus 273 ~G~~li~~g~~l~~~~ 288 (292)
T COG0697 273 LGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 5667788888887655
No 16
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.24 E-value=5.3e-05 Score=75.51 Aligned_cols=212 Identities=14% Similarity=0.047 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHH-hhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCCCCCC
Q 013305 59 RVGILVFLLGNCLNFISF-GYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYT 137 (445)
Q Consensus 59 ~~G~~l~~~g~il~~~Al-~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~~~~t 137 (445)
+.|....+++..+.+.++ ...|.....-+..+.=++..+++.+ +|||++++++.|.++.++|+.++... ++ ...+
T Consensus 73 ~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~--~~-~~~~ 148 (292)
T PRK11272 73 LIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG--GN-LSGN 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC--cc-cccc
Confidence 345555555566667777 8888888888888888889999975 79999999999999999998765321 11 1100
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 013305 138 PEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRL 217 (445)
Q Consensus 138 ~~eL~~~~~~~~fl~y~~i~iviv~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~aK~~~~ll~~ 217 (445)
..+ ..+..+..+..+......|+.. ++.. .....|....| +...... . ..
T Consensus 149 ---------~~G-~l~~l~a~~~~a~~~~~~~~~~-------~~~~----~~~~~~~~~~~---~~~~~~~---~-~~-- 198 (292)
T PRK11272 149 ---------PWG-AILILIASASWAFGSVWSSRLP-------LPVG----MMAGAAEMLAA---GVVLLIA---S-LL-- 198 (292)
T ss_pred ---------hHH-HHHHHHHHHHHHHHHHHHHhcC-------CCcc----hHHHHHHHHHH---HHHHHHH---H-HH--
Confidence 011 1111111111111111222211 1100 01112222211 1111000 0 01
Q ss_pred HhccCc--cchhHHHHHH-HHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHH
Q 013305 218 AMSNGY--QLHSWFTYSM-LLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMF 294 (445)
Q Consensus 218 ti~g~~--qf~~w~tY~l-lv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~ 294 (445)
.+.+ ...++..|.. +...+.+...-..+.|+++++.+++.+... ....++++.+.|.++++|.. ++. .
T Consensus 199 --~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~-~~l~Pi~a~i~~~~~l~E~~--t~~----~ 269 (292)
T PRK11272 199 --SGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSY-AYVNPVVAVLLGTGLGGETL--SPI----E 269 (292)
T ss_pred --cCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHHHHHHHHHcCCCC--cHH----H
Confidence 1211 1123333332 222333344444556999999988766655 66889999999999999973 333 4
Q ss_pred HHHHHHHHHhhheecCCCC
Q 013305 295 ILGTASVFIGISLLAPDES 313 (445)
Q Consensus 295 ~~G~~vi~~GV~lLs~~~~ 313 (445)
.+|+++++.|+++++.++.
T Consensus 270 iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 270 WLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5788889999988876543
No 17
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.20 E-value=8e-06 Score=72.43 Aligned_cols=114 Identities=18% Similarity=0.235 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccc-C--CC------------CCCCCCccccccccccchh----HHHHHHHHHHH
Q 013305 9 FINLVGSIAINFGTNLLKLGHIEREKHS-T--LD------------SDGTNGKHSLKPIVHYHSW----RVGILVFLLGN 69 (445)
Q Consensus 9 ~Lal~ss~l~a~G~~lqK~a~~~~~~~~-~--~~------------~~g~~g~~~~~~ll~~p~W----~~G~~l~~~g~ 69 (445)
+.|+.++++.++..++-|.+....+..- + .+ .. |......-...+.| ..| +.-+++.
T Consensus 6 ~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~---g~~~~~~~~~~k~~lflilSG-la~glsw 81 (140)
T COG2510 6 IYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVT---GNWQAGGEIGPKSWLFLILSG-LAGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhc---CceecccccCcceehhhhHHH-HHHHHHH
Confidence 6889999999999999998865321100 0 00 00 00000000111223 233 4455777
Q ss_pred HHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEE
Q 013305 70 CLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (445)
Q Consensus 70 il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv 126 (445)
++-|.|+.-+++|.|+|+-.++.++..+++..+|||+++...|+|+++|++|++++.
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 777899999999999999999999999999999999999999999999999998764
No 18
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.18 E-value=0.0006 Score=68.07 Aligned_cols=263 Identities=13% Similarity=0.080 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC-CCCCCC-----c-cccccccccc----hhHHHHHHHHHHHHHHH
Q 013305 5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD-SDGTNG-----K-HSLKPIVHYH----SWRVGILVFLLGNCLNF 73 (445)
Q Consensus 5 ~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~-~~g~~g-----~-~~~~~ll~~p----~W~~G~~l~~~g~il~~ 73 (445)
..|+.+.+++.++.+.+..+-|.+....+....-. +..... . ...+.-.+++ .++.|.. +.+.+.+.+
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~ 89 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS-LGGMNYLFY 89 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH-HHHHHHHHH
Confidence 45788999999999999999997754211000000 000000 0 0000001122 2356654 566677778
Q ss_pred HHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCCCCCCHHHHHHHhcchhHHHH
Q 013305 74 ISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVY 153 (445)
Q Consensus 74 ~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~~~~t~~eL~~~~~~~~fl~y 153 (445)
.++.+.|.+...-+..+.=++..+++ +|+.. ++.+..+.++|+.+++..+... ...+ . .+. .+
T Consensus 90 ~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--~~~~~~i~~~Gv~li~~~~~~~-~~~~---~------~G~-ll 152 (293)
T PRK10532 90 LSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--DFVWVVLAVLGLWFLLPLGQDV-SHVD---L------TGA-AL 152 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--HHHHHHHHHHHHheeeecCCCc-ccCC---h------HHH-HH
Confidence 89999999877666655555555554 25443 4566777888988766432211 1111 0 011 11
Q ss_pred HHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccCccchhHHHHHH
Q 013305 154 CLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSM 233 (445)
Q Consensus 154 ~~i~iviv~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~aK~~~~ll~~ti~g~~qf~~w~tY~l 233 (445)
.....+..+......|+..+ +.+ . ....+ ..++++... .. +. . ..+.....++..+..
T Consensus 153 ~l~aa~~~a~~~v~~r~~~~------~~~----~-~~~~~---~~~~~~~~l-~~--~~--~---~~~~~~~~~~~~~~~ 210 (293)
T PRK10532 153 ALGAGACWAIYILSGQRAGA------EHG----P-ATVAI---GSLIAALIF-VP--IG--A---LQAGEALWHWSILPL 210 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhc------cCC----c-hHHHH---HHHHHHHHH-HH--HH--H---HccCcccCCHHHHHH
Confidence 11111111221112232110 000 0 01111 112222111 10 11 0 111111234444432
Q ss_pred -HHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhheecCCC
Q 013305 234 -LLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDE 312 (445)
Q Consensus 234 -lv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~ 312 (445)
+...+++...+....|+++++.+++.+.+. ....++++++.|.++|+|.. ++. ..+|.++++.|+......+
T Consensus 211 ~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~-~~l~Pv~a~l~~~l~lgE~~--~~~----~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 211 GLAVAILSTALPYSLEMIALTRLPTRTFGTL-MSMEPALAAVSGMIFLGETL--TLI----QWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhHHHHH-HHhHHHHHHHHHHHHhCCCC--cHH----HHHHHHHHHHHHHHHHhcC
Confidence 334455566676677999999999866655 55889999999999999974 343 3456666777777665554
Q ss_pred CC
Q 013305 313 SK 314 (445)
Q Consensus 313 ~~ 314 (445)
.+
T Consensus 284 ~~ 285 (293)
T PRK10532 284 RR 285 (293)
T ss_pred CC
Confidence 44
No 19
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.10 E-value=0.00035 Score=71.92 Aligned_cols=69 Identities=16% Similarity=0.149 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEE
Q 013305 57 SWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (445)
Q Consensus 57 ~W~~G~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv 126 (445)
....|+.-. .+..+...++.+.+++..+=+-+++=++.++++++++|||++++.+.+++++++|+.+.+
T Consensus 117 llp~gl~~~-~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 117 FLPQGLCHL-FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHH-HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 344555433 345556699999999999999999999999999999999999999999999999999865
No 20
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.08 E-value=0.00058 Score=68.55 Aligned_cols=227 Identities=17% Similarity=0.208 Sum_probs=128.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCCCCCC
Q 013305 58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYT 137 (445)
Q Consensus 58 W~~G~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~~~~t 137 (445)
+..+ .++.++..++-.|+.+.|...-+=+-+...+++++++.+++|+|.+++++++++++++|++++.....++.+..+
T Consensus 68 ~~~~-~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~ 146 (303)
T PF08449_consen 68 AILS-FLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSN 146 (303)
T ss_pred HHHH-HHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccc
Confidence 4555 456688889999999999999999999999999999999999999999999999999999988776544433222
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHH-HHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHH-HHHHHHH
Q 013305 138 PEQLAEKYSNITFLVYCLILIFIVAIY-HYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFA-KSLSNLL 215 (445)
Q Consensus 138 ~~eL~~~~~~~~fl~y~~i~iviv~l~-~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~a-K~~~~ll 215 (445)
.++ .++.. -++.+++-.++-. ...+. |+....++... + ..+.|--.-|+......... + -.+ .
T Consensus 147 ~~~-----~~~~~-G~~ll~~sl~~~a~~~~~q--e~~~~~~~~~~--~---~~mfy~n~~~~~~~~~~~~~l~-~~~-~ 211 (303)
T PF08449_consen 147 SSS-----FSSAL-GIILLLLSLLLDAFTGVYQ--EKLFKKYGKSP--W---ELMFYTNLFSLPFLLILLFLLP-TGE-F 211 (303)
T ss_pred ccc-----ccchh-HHHHHHHHHHHHHHHHHHH--HHHHHHhCCcH--H---HHHHHHHHHHHHHHHHHHHHHH-hhH-h
Confidence 211 01110 1111111111100 01110 11111112221 1 23444444344322222111 1 111 1
Q ss_pred HHHhccCccchhHHHHHHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHH
Q 013305 216 RLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFI 295 (445)
Q Consensus 216 ~~ti~g~~qf~~w~tY~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~ 295 (445)
...+ +....||..+..++...++...-..+.+.-.+++++... -+....=...+++.++++|++ ++++.++
T Consensus 212 ~~~~--~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~-t~v~t~Rk~~sillS~~~f~~--~~~~~~~---- 282 (303)
T PF08449_consen 212 RSAI--RFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTT-TIVTTLRKFLSILLSVIIFGH--PLSPLQW---- 282 (303)
T ss_pred hHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh-hhHHHHHHHHHHHHHHHhcCC--cCChHHH----
Confidence 1111 111256666655555444433333455666778877644 444555678889999999986 4556555
Q ss_pred HHHHHHHHhhheec
Q 013305 296 LGTASVFIGISLLA 309 (445)
Q Consensus 296 ~G~~vi~~GV~lLs 309 (445)
.|.++++.|+.+=+
T Consensus 283 ~G~~lv~~g~~~~~ 296 (303)
T PF08449_consen 283 IGIVLVFAGIFLYS 296 (303)
T ss_pred HHHHHhHHHHHHHH
Confidence 45556677766533
No 21
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.07 E-value=5.7e-06 Score=71.27 Aligned_cols=66 Identities=26% Similarity=0.425 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEe
Q 013305 61 GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (445)
Q Consensus 61 G~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~ 127 (445)
|++...++..+.+.|+.++| ..++++.+++.+++.+++.+++|||++++++.|++++.+|++++..
T Consensus 41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAW 106 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 45555578999999999999 5899999999999999999999999999999999999999987765
No 22
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.97 E-value=5.4e-05 Score=66.78 Aligned_cols=99 Identities=14% Similarity=0.141 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhc-h
Q 013305 11 NLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALG-S 89 (445)
Q Consensus 11 al~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~~G~~l~~~g~il~~~Al~~ap~slV~PLg-a 89 (445)
-+.+.++-..|....|++...+ + ...|+..+.++++++.+...|+...|+++.+|+- +
T Consensus 7 L~~Ai~~Ev~~t~~LK~s~g~~------------~---------~~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~G 65 (120)
T PRK10452 7 LALAIATEITGTLSMKWASVSE------------G---------NGGFILMLVMISLSYIFLSFAVKKIALGVAYALWEG 65 (120)
T ss_pred HHHHHHHHHHHHHHHHhhccCC------------C---------cHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence 3455666777888888773210 0 1136778888889999999999999999999994 6
Q ss_pred hhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecC
Q 013305 90 VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGN 130 (445)
Q Consensus 90 l~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~ 130 (445)
++.+...+.+.+++||+++..+++|..++++|++++=..++
T Consensus 66 iG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 66 IGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999987755443
No 23
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.93 E-value=0.00038 Score=69.36 Aligned_cols=215 Identities=17% Similarity=0.190 Sum_probs=117.6
Q ss_pred hhHHHHHH---HHHHHHHHHHHHhhhhhHHHhhhch-hhHHHHHHHHHHHhccccccchhh----hHHHhhhceeeEEee
Q 013305 57 SWRVGILV---FLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKVLV----ATAFIVLGNIFLVSF 128 (445)
Q Consensus 57 ~W~~G~~l---~~~g~il~~~Al~~ap~slV~PLga-l~lv~~~l~a~~~l~E~~~~~~~~----G~~lii~G~~liv~~ 128 (445)
.|+.+++. -.+|+++|+.++...-.|...|+.. .+++.|.+.+.+++||--+..+++ +.+++++|+++....
T Consensus 44 ~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~ 123 (269)
T PF06800_consen 44 SFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQ 123 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccc
Confidence 36665553 4579999999999999999999994 899999999999999977766644 778899998876664
Q ss_pred cCCCCCCCCHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHH
Q 013305 129 GNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFA 208 (445)
Q Consensus 129 g~~~~~~~t~~eL~~~~~~~~fl~y~~i~iviv~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~a 208 (445)
..++++..+..+.. ... .+ +++..+.++.|..-.+....+ .|....|... |++-+-.+...
T Consensus 124 ~~~~~~~~~~~~~~-----kgi-~~----Ll~stigy~~Y~~~~~~~~~~-----~~~~~lPqai----Gm~i~a~i~~~ 184 (269)
T PF06800_consen 124 DKKSDKSSSKSNMK-----KGI-LA----LLISTIGYWIYSVIPKAFHVS-----GWSAFLPQAI----GMLIGAFIFNL 184 (269)
T ss_pred cccccccccccchh-----hHH-HH----HHHHHHHHHHHHHHHHhcCCC-----hhHhHHHHHH----HHHHHHHHHhh
Confidence 44443322222211 111 11 111122233332211100001 1122222222 22211111111
Q ss_pred HHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHH-H-hhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccC
Q 013305 209 KSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMAR-L-NEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVF 286 (445)
Q Consensus 209 K~~~~ll~~ti~g~~qf~~w~tY~llv~~v~~~l~Ql~~-L-N~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~ 286 (445)
+. ++++.+-.+|.=++..++-.+.=+.| + ++ + --.+.-+|+-|.. .+.+.++|+.+|||..
T Consensus 185 ~~-----------~~~~~~k~~~~nil~G~~w~ignl~~~is~~--~-~G~a~af~lSQ~~-vvIStlgGI~il~E~K-- 247 (269)
T PF06800_consen 185 FS-----------KKPFFEKKSWKNILTGLIWGIGNLFYLISAQ--K-NGVATAFTLSQLG-VVISTLGGIFILKEKK-- 247 (269)
T ss_pred cc-----------cccccccchHHhhHHHHHHHHHHHHHHHhHH--h-ccchhhhhHHhHH-HHHHHhhhheEEEecC--
Confidence 10 12222223333222222211111111 1 22 1 1223455666665 6688899999999986
Q ss_pred ChHHHHHHHHHHHHHHHhhhe
Q 013305 287 DALRATMFILGTASVFIGISL 307 (445)
Q Consensus 287 ~~~~~~~~~~G~~vi~~GV~l 307 (445)
+........+|+++++.|.++
T Consensus 248 t~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 248 TKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred chhhHHHHHHHHHHHHHhhhc
Confidence 346778888999999888765
No 24
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.82 E-value=0.00013 Score=63.40 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccch-hHHHHHHHHHHHHHHHHHHhhhhhHHHhhh-c
Q 013305 11 NLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHS-WRVGILVFLLGNCLNFISFGYAAQSLLAAL-G 88 (445)
Q Consensus 11 al~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~-W~~G~~l~~~g~il~~~Al~~ap~slV~PL-g 88 (445)
-+++.++-..|....|++. |. +++. ++..+.+|+++..+...|+...|+++..|+ .
T Consensus 7 L~~a~~~Ev~~~~~lK~s~---------------gf-------~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~ 64 (110)
T PRK09541 7 LGGAILAEVIGTTLMKFSE---------------GF-------TRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWS 64 (110)
T ss_pred HHHHHHHHHHHHHHHHHhc---------------CC-------CchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHH
Confidence 3455677777888888773 11 1122 356677778888888899999999999999 5
Q ss_pred hhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeec
Q 013305 89 SVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFG 129 (445)
Q Consensus 89 al~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g 129 (445)
+++.+.+.+.+.+++||+++..+++|..++++|++++-..+
T Consensus 65 GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 65 GVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 69999999999999999999999999999999998875433
No 25
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.68 E-value=0.00089 Score=69.03 Aligned_cols=300 Identities=10% Similarity=0.042 Sum_probs=148.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhh-ccccC----------CCCCCCCCcccccccc---ccchhHHHHH---HH
Q 013305 3 EWVIGAFINLVGSIAINFGTNLLKLGHIER-EKHST----------LDSDGTNGKHSLKPIV---HYHSWRVGIL---VF 65 (445)
Q Consensus 3 ~~~IGi~Lal~ss~l~a~G~~lqK~a~~~~-~~~~~----------~~~~g~~g~~~~~~ll---~~p~W~~G~~---l~ 65 (445)
+..+|++..+++.++.+.=.+-|||...=+ |.-.. +---+--+...+.+++ ....|..+++ +-
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~~k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~W 83 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKKVKKWSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGALW 83 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHHH
Confidence 567799999999999988888888842111 00000 0000000000001111 1234544443 34
Q ss_pred HHHHHHHHHHHhhhhhHHHhhhch-hhHHHHHHHHHHHhcccc---c----cchhhhHHHhhhceeeEEeecCCCCCCCC
Q 013305 66 LLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMV---T----VKVLVATAFIVLGNIFLVSFGNHQSPVYT 137 (445)
Q Consensus 66 ~~g~il~~~Al~~ap~slV~PLga-l~lv~~~l~a~~~l~E~~---~----~~~~~G~~lii~G~~liv~~g~~~~~~~t 137 (445)
.+|++.++.++.+.-+|+-.|++. ++++.+.++..+++||=- + ....+|++++++|+++....+...++..+
T Consensus 84 ~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~~~ 163 (345)
T PRK13499 84 GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERKMG 163 (345)
T ss_pred HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence 679999999999999999999987 889999999999998632 2 23467999999999988776654444332
Q ss_pred HHHHHHHhcchhHHHHHHHHHHH-HHHHHHHHHhcccc---ccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHHHHHHH
Q 013305 138 PEQLAEKYSNITFLVYCLILIFI-VAIYHYIYRKGENL---LAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSN 213 (445)
Q Consensus 138 ~~eL~~~~~~~~fl~y~~i~ivi-v~l~~~~~r~~~~~---~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~aK~~~~ 213 (445)
.||-.+.-..-.. +.+.+..+. .+.. +....+... .+..|.+. .+ ...+...+..- |++..-+.=+...
T Consensus 164 ~~~~~~~~~~KGi-~ialisgi~~~~f~-~~~~~~~~~~~~a~~~g~~~-~~-~~lp~~~~~~~---G~~~~n~~~~~~~ 236 (345)
T PRK13499 164 IKKAEEFNLKKGL-ILAVMSGIFSACFS-FAMDAGKPMHEAAAALGVDP-LY-AALPSYVVIMG---GGAITNLGFCFIR 236 (345)
T ss_pred cccccccchHhHH-HHHHHHHHHHHHHH-HHHhhccchhhhhhhcCCCc-hH-HHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 2110011111121 122111111 1111 111111110 00112211 11 11222212212 2221111000111
Q ss_pred HHH-HHhccCccchh-----HHHHHHHHHHHHHHHHHHHHH--hhhhcccc--cceehhhHHHHHHHHHHHHHHhhhccc
Q 013305 214 LLR-LAMSNGYQLHS-----WFTYSMLLLFFSTAGFWMARL--NEGLSLFD--AILIVPMFQIAWTSFSICTGFVYFQEY 283 (445)
Q Consensus 214 ll~-~ti~g~~qf~~-----w~tY~llv~~v~~~l~Ql~~L--N~aL~~~d--a~~VvPv~~v~~t~~si~~G~i~f~E~ 283 (445)
+-+ ++.+....+.. +..|++-.+.-+.=..|..+. -.+ +..+ +....++-+-...+++.+.|+ +++|+
T Consensus 237 ~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~-~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~ 314 (345)
T PRK13499 237 LAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHS-KLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEW 314 (345)
T ss_pred HhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCccchHHHHHhccHHHHHHHHhhh-hhhhc
Confidence 011 11100011211 344443333322233443332 222 1111 111233444555577888888 59999
Q ss_pred ccCChHHHHHHHHHHHHHHHhhheecCC
Q 013305 284 QVFDALRATMFILGTASVFIGISLLAPD 311 (445)
Q Consensus 284 ~~~~~~~~~~~~~G~~vi~~GV~lLs~~ 311 (445)
...+........+|+++++.|.+++.-.
T Consensus 315 K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 315 KGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred cCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 9988888899999999999999887643
No 26
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.68 E-value=0.0044 Score=60.33 Aligned_cols=62 Identities=10% Similarity=0.026 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEE
Q 013305 65 FLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (445)
Q Consensus 65 ~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv 126 (445)
+.++..+.+.|+...|.+...-+..+.=++..+++++++|||+++++|+|+++..+|+++++
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 55678888899999999988888888889999999999999999999999999999988654
No 27
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.57 E-value=0.0014 Score=64.42 Aligned_cols=73 Identities=18% Similarity=0.354 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCC
Q 013305 59 RVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH 131 (445)
Q Consensus 59 ~~G~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~ 131 (445)
.+=-++|.+.+.+.++++...+.+.-|=+...-++++.+++.++||+|+++++|++.++.++|++++-.....
T Consensus 21 ~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 21 AVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 3344679999999999999999999999999999999999999999999999999999999998876654443
No 28
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.55 E-value=0.00028 Score=70.48 Aligned_cols=125 Identities=14% Similarity=0.063 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCC-CCC--------c-cccccccccc----hhHHHHHHHHHHHH
Q 013305 5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDG-TNG--------K-HSLKPIVHYH----SWRVGILVFLLGNC 70 (445)
Q Consensus 5 ~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g-~~g--------~-~~~~~ll~~p----~W~~G~~l~~~g~i 70 (445)
.+|.+++++++++.++...+.|+...+.+.... . .. .-+ . .......... .++.|++..+++..
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~ 224 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGAEHGPATV-A-IGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYS 224 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHH-H-HHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999998887433211000 0 00 000 0 0000000111 24677777788889
Q ss_pred HHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCC
Q 013305 71 LNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH 131 (445)
Q Consensus 71 l~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~ 131 (445)
++..++...|.+.+.++..+.-+++.+++.+++||+++..+++|.++++.|+++.....++
T Consensus 225 l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 225 LEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999998877655444
No 29
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.41 E-value=0.00088 Score=59.67 Aligned_cols=114 Identities=18% Similarity=0.257 Sum_probs=76.6
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHH--------HHHH-----------HhccCccch---hHHHHHHHHH-HHHHHHHHHH
Q 013305 190 PFSYAIVSGAVGSFSVLFAKSLSN--------LLRL-----------AMSNGYQLH---SWFTYSMLLL-FFSTAGFWMA 246 (445)
Q Consensus 190 ~l~y~~~sGllgg~svl~aK~~~~--------ll~~-----------ti~g~~qf~---~w~tY~llv~-~v~~~l~Ql~ 246 (445)
...|+..++.+.|++.+++|..-+ .+++ ...|+.|-. .+..|..+++ .+.+.+.|+.
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~ 83 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLL 83 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHH
Confidence 467778888888888888876533 1111 123433322 3344443333 3445555555
Q ss_pred HHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhheecCC
Q 013305 247 RLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPD 311 (445)
Q Consensus 247 ~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~ 311 (445)
| =+||+.++++.|+|+ --.....+++.+..+++|..... -.+|++++.+|+++++.+
T Consensus 84 Y-f~ALk~G~as~VvPl-dk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs~~ 140 (140)
T COG2510 84 Y-FRALKKGKASRVVPL-DKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVSLR 140 (140)
T ss_pred H-HHHHhcCCcceEEEc-ccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEecC
Confidence 4 479999999999998 44667788899999999986543 347899999999998863
No 30
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.40 E-value=0.001 Score=55.77 Aligned_cols=85 Identities=15% Similarity=0.111 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhH-HHHHHHHHHHHHHHHHHhhhhhHHHhhhc-h
Q 013305 12 LVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWR-VGILVFLLGNCLNFISFGYAAQSLLAALG-S 89 (445)
Q Consensus 12 l~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~-~G~~l~~~g~il~~~Al~~ap~slV~PLg-a 89 (445)
+++.++...|+...|+++.. +++.|. ..+.+++++..+...|+...|.++..|+- +
T Consensus 7 ~~a~~~ev~~~~~lK~s~g~----------------------~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g 64 (93)
T PF00893_consen 7 LLAILFEVVGTIALKASHGF----------------------TQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTG 64 (93)
T ss_dssp HHHHHHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh----------------------cchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 45556777788888885321 112233 44446788989999999999999999975 5
Q ss_pred hhHHHHHHHHHHHhccccccchhhhHHHh
Q 013305 90 VQFVSNIAFSYFVFNKMVTVKVLVATAFI 118 (445)
Q Consensus 90 l~lv~~~l~a~~~l~E~~~~~~~~G~~li 118 (445)
++.+...+.+.+++||+++..++.|..+|
T Consensus 65 ~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 65 LGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 99999999999999999999999999875
No 31
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.27 E-value=0.00018 Score=60.81 Aligned_cols=68 Identities=16% Similarity=0.335 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeE
Q 013305 58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL 125 (445)
Q Consensus 58 W~~G~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~li 125 (445)
...|.+...++..+...++...|.+.++++..++-+++.+++.+++||+++.+++.|+++++.|++++
T Consensus 57 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 57 LFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred hHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45566656789999999999999999999999999999999999999999999999999999998764
No 32
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.22 E-value=0.0012 Score=68.42 Aligned_cols=124 Identities=13% Similarity=0.134 Sum_probs=84.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCC-C---C----------CCCcccccccc-ccchhHHHHHH---
Q 013305 3 EWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDS-D---G----------TNGKHSLKPIV-HYHSWRVGILV--- 64 (445)
Q Consensus 3 ~~~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~-~---g----------~~g~~~~~~ll-~~p~W~~G~~l--- 64 (445)
+|.+|.++++.++++.++..++||+-..+......-.. . + .++. ....+. .-..++..++.
T Consensus 186 ~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~i~y~~i 264 (358)
T PLN00411 186 DWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKN-NPSVWIIHFDITLITIVTMAI 264 (358)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccC-CcccceeccchHHHHHHHHHH
Confidence 36789999999999999999999986543211100000 0 0 0000 000000 00111112221
Q ss_pred -HHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEe
Q 013305 65 -FLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (445)
Q Consensus 65 -~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~ 127 (445)
..++..+|..++...+.+.+..+.-+.=+++++++..++||+++..+++|+++++.|+.+...
T Consensus 265 ~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 265 ITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW 328 (358)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 234777788899999999999999999999999999999999999999999999999887653
No 33
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.16 E-value=0.0028 Score=61.20 Aligned_cols=119 Identities=15% Similarity=0.152 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCC---C--CC-----CC-ccccccccccchh----HHHHHHHHHH
Q 013305 4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDS---D--GT-----NG-KHSLKPIVHYHSW----RVGILVFLLG 68 (445)
Q Consensus 4 ~~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~---~--g~-----~g-~~~~~~ll~~p~W----~~G~~l~~~g 68 (445)
...|+.++++++++.+....++|+...+.+.....-. . +. -. ............| +.|.+..+++
T Consensus 126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (260)
T TIGR00950 126 NPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALA 205 (260)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 3569999999999999999999997543211000000 0 00 00 0000000111223 2444555678
Q ss_pred HHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhce
Q 013305 69 NCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGN 122 (445)
Q Consensus 69 ~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~ 122 (445)
..+++.++...|.+.+..+..+.-+++.+++.+++||+++..++.|+++++.|+
T Consensus 206 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 206 YFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 889999999999999999999999999999999999999999999999999986
No 34
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.05 E-value=0.0053 Score=53.35 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhHHH-HHHHHHHHHHHHHHHhhhhhHHHh
Q 013305 7 GAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVG-ILVFLLGNCLNFISFGYAAQSLLA 85 (445)
Q Consensus 7 Gi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~~G-~~l~~~g~il~~~Al~~ap~slV~ 85 (445)
....-+++.++-..|....|++. |. ++|.|.+. +..+++++.+-..|+...|..+..
T Consensus 8 ~~~~L~~Ai~~Ev~~t~~Lk~s~---------------gf-------~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAY 65 (109)
T PRK10650 8 HAAWLALAIVLEIVANIFLKFSD---------------GF-------RRKIYGILSLAAVLAAFSALSQAVKGIDLSVAY 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---------------CC-------cchHHHHHHHHHHHHHHHHHHHHHhhCchHHHH
Confidence 44455666777788888888772 11 12334333 333456666667888899999999
Q ss_pred hhch-hhHHHHHHHHHHHhccccccchhhhHHHhhhceeeE
Q 013305 86 ALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL 125 (445)
Q Consensus 86 PLga-l~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~li 125 (445)
++=+ ++.+...+.+.+++||+++..++.|..+++.|++++
T Consensus 66 AvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 66 ALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 9866 889999999999999999999999999999998764
No 35
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.03 E-value=0.0042 Score=53.60 Aligned_cols=92 Identities=15% Similarity=0.088 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccch-hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhch-
Q 013305 12 LVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHS-WRVGILVFLLGNCLNFISFGYAAQSLLAALGS- 89 (445)
Q Consensus 12 l~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~-W~~G~~l~~~g~il~~~Al~~ap~slV~PLga- 89 (445)
+++.++-..|...+|++. |. +++. +..-+.++.+++.+-..|+...|.++..++=+
T Consensus 7 ~~Ai~~Ev~~t~~Lk~s~---------------gf-------~~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~G 64 (105)
T PRK11431 7 VIAGLLEVVWAVGLKYTH---------------GF-------SRLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTG 64 (105)
T ss_pred HHHHHHHHHHHHHHHhhh---------------CC-------ccHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHH
Confidence 345566677777777762 11 1122 33445556777777788999999999999876
Q ss_pred hhHHHHHHHHHHHhccccccchhhhHHHhhhceeeE
Q 013305 90 VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL 125 (445)
Q Consensus 90 l~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~li 125 (445)
++.+...+.+.+++||+++..++.|..+++.|++.+
T Consensus 65 iG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 65 IGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999998865
No 36
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.93 E-value=0.0037 Score=62.13 Aligned_cols=212 Identities=17% Similarity=0.111 Sum_probs=118.4
Q ss_pred HHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEE----eecCCCCCCCCHHHHH
Q 013305 67 LGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV----SFGNHQSPVYTPEQLA 142 (445)
Q Consensus 67 ~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv----~~g~~~~~~~t~~eL~ 142 (445)
.|-.+..+||.+.|++=..-..-.+=+++.++|+.+|||+.++.+.+|......|+++++ +||..++.+.+..
T Consensus 109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~--- 185 (346)
T KOG4510|consen 109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQ--- 185 (346)
T ss_pred hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccc---
Confidence 466677889988888866555666778999999999999999999999999999999998 6776555433222
Q ss_pred HHhcchhHHHHHHHHHHHHH-HHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc
Q 013305 143 EKYSNITFLVYCLILIFIVA-IYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSN 221 (445)
Q Consensus 143 ~~~~~~~fl~y~~i~iviv~-l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~aK~~~~ll~~ti~g 221 (445)
.-+..|.-.+ .+..++.+ -.+.+.|+- ||+. +.. ..+.|=..-+++-++-. -.+ -|
T Consensus 186 ~~~~~~gt~a--ai~s~lf~asvyIilR~i-------Gk~~-h~~--msvsyf~~i~lV~s~I~----------~~~-ig 242 (346)
T KOG4510|consen 186 VEYDIPGTVA--AISSVLFGASVYIILRYI-------GKNA-HAI--MSVSYFSLITLVVSLIG----------CAS-IG 242 (346)
T ss_pred ccccCCchHH--HHHhHhhhhhHHHHHHHh-------hccc-cEE--EEehHHHHHHHHHHHHH----------Hhh-cc
Confidence 1234555222 22222211 122333432 2221 111 11222211111111110 001 12
Q ss_pred Cccc-hhHHHH-HHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHH
Q 013305 222 GYQL-HSWFTY-SMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299 (445)
Q Consensus 222 ~~qf-~~w~tY-~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~ 299 (445)
.-|+ +.|.=+ +++.+.+...+.| .+|.+|||.=.+-- +.++.+...+++.+.-+++|+|+.. .|.+ +|.+
T Consensus 243 ~~~lP~cgkdr~l~~~lGvfgfigQ-IllTm~lQiErAGp-vaim~~~dvvfAf~wqv~ff~~~Pt--~ws~----~Ga~ 314 (346)
T KOG4510|consen 243 AVQLPHCGKDRWLFVNLGVFGFIGQ-ILLTMGLQIERAGP-VAIMTYTDVVFAFFWQVLFFGHWPT--IWSW----VGAV 314 (346)
T ss_pred ceecCccccceEEEEEehhhhhHHH-HHHHHHhhhhccCC-eehhhHHHHHHHHHHHHHHhcCCCh--HHHh----hcee
Confidence 2222 222222 2333445555666 56788998744442 3456667788889999999999853 3433 4555
Q ss_pred HHHHhhheecCCC
Q 013305 300 SVFIGISLLAPDE 312 (445)
Q Consensus 300 vi~~GV~lLs~~~ 312 (445)
+++..++..+..+
T Consensus 315 ~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 315 MVVSSTVWVALKK 327 (346)
T ss_pred eeehhHHHHHHHH
Confidence 4444444444433
No 37
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.84 E-value=0.0085 Score=51.79 Aligned_cols=93 Identities=19% Similarity=0.161 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhHH-HHHHHHHHHHHHHHHHhhhhhHHHhhhch
Q 013305 11 NLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV-GILVFLLGNCLNFISFGYAAQSLLAALGS 89 (445)
Q Consensus 11 al~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~~-G~~l~~~g~il~~~Al~~ap~slV~PLga 89 (445)
-+++.++-..|....|+++- . +|+.|.+ -++.+++++.+-..|+...|+.+..++=+
T Consensus 7 L~lAi~~EV~~~~~lK~s~g---------------f-------~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~ 64 (106)
T COG2076 7 LLLAILLEVVGTTLLKYSDG---------------F-------TRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWT 64 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhc---------------c-------cccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHH
Confidence 34455666777777888742 1 1223444 44555677777788999999999988754
Q ss_pred -hhHHHHHHHHHHHhccccccchhhhHHHhhhceeeE
Q 013305 90 -VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL 125 (445)
Q Consensus 90 -l~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~li 125 (445)
++.+...+.+.+++||+++..+++|..++++|++.+
T Consensus 65 GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 65 GIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred HHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999998754
No 38
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=96.71 E-value=0.006 Score=60.83 Aligned_cols=121 Identities=12% Similarity=0.102 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccC--CCCCC---------CCCccccccccccchh----HHHHHHHHHHH
Q 013305 5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHST--LDSDG---------TNGKHSLKPIVHYHSW----RVGILVFLLGN 69 (445)
Q Consensus 5 ~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~--~~~~g---------~~g~~~~~~ll~~p~W----~~G~~l~~~g~ 69 (445)
..|..++++++++.+++...+||...+...... .---+ ..+. ..........| +.|+...+++.
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~i~~s~~~~ 227 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGE-RLTALPTLSGFLALGYLAVFGSIIAI 227 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCC-cccccCCHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999986432110000 00000 0000 00000001123 23455556778
Q ss_pred HHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEE
Q 013305 70 CLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (445)
Q Consensus 70 il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv 126 (445)
.++..++...+.+.+..+..+.-+++.+++.+++||+++..+++|+++++.|+.++.
T Consensus 228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999987653
No 39
>PRK11689 aromatic amino acid exporter; Provisional
Probab=96.71 E-value=0.0063 Score=60.80 Aligned_cols=118 Identities=8% Similarity=0.023 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCC---------CCCccccccccccchh----HHHHHHHHHHHHH
Q 013305 5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDG---------TNGKHSLKPIVHYHSW----RVGILVFLLGNCL 71 (445)
Q Consensus 5 ~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g---------~~g~~~~~~ll~~p~W----~~G~~l~~~g~il 71 (445)
..|.+++++++++.+++.++.||-..+.......---+ ..+. ...+ .....| +.| +..++++.+
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~-~~~~~~~~l~~~~-~~t~~~~~l 231 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQ-PAMV-FSLPAIIKLLLAA-AAMGFGYAA 231 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcC-cccc-CCHHHHHHHHHHH-HHHHHHHHH
Confidence 45999999999999999999998643211000000000 0000 0000 000112 223 234567888
Q ss_pred HHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeE
Q 013305 72 NFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL 125 (445)
Q Consensus 72 ~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~li 125 (445)
+..++...|.+.+.++..+.-+++++++.+++||+++..+++|.++|+.|+.+.
T Consensus 232 ~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~ 285 (295)
T PRK11689 232 WNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC 285 (295)
T ss_pred HHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence 899999999999999999999999999999999999999999999999997755
No 40
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=96.71 E-value=0.018 Score=49.87 Aligned_cols=80 Identities=16% Similarity=0.060 Sum_probs=59.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHh
Q 013305 225 LHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIG 304 (445)
Q Consensus 225 f~~w~tY~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~G 304 (445)
+++|.......+.+++...-..++..+++.-|....+|+.+ .-.+.+.+.|..+|+|..+ .. -.+|+.++++|
T Consensus 31 ~~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E~ls--~~----~~~Gi~lii~G 103 (111)
T PRK15051 31 KRRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHEPVS--PR----HWCGVAFIIGG 103 (111)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCCCCC--HH----HHHHHHHHHHH
Confidence 45554444444444444556677899999999999999999 6777788999999999753 43 34677888899
Q ss_pred hheecCC
Q 013305 305 ISLLAPD 311 (445)
Q Consensus 305 V~lLs~~ 311 (445)
+++++++
T Consensus 104 v~~i~~~ 110 (111)
T PRK15051 104 IVILGST 110 (111)
T ss_pred HHHHhcc
Confidence 9888764
No 41
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=96.48 E-value=0.0021 Score=63.69 Aligned_cols=119 Identities=13% Similarity=0.058 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCC---C--CCCc--cc------cccc-ccc-chh---HHHHHHHHH
Q 013305 6 IGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSD---G--TNGK--HS------LKPI-VHY-HSW---RVGILVFLL 67 (445)
Q Consensus 6 IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~---g--~~g~--~~------~~~l-l~~-p~W---~~G~~l~~~ 67 (445)
-|+.++++++++.+.+..+.|+.+.+.......... + ..+. .. ..+. ... ..| +.+.+...+
T Consensus 144 ~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l 223 (281)
T TIGR03340 144 KAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGG 223 (281)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHH
Confidence 366788899999999988888764321110000000 0 0000 00 0000 001 111 334444567
Q ss_pred HHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceee
Q 013305 68 GNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124 (445)
Q Consensus 68 g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~l 124 (445)
++.+++.++...|.+.+.++.-++-+++.+++.+++||+++..+++|.+++++|+.+
T Consensus 224 ~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 224 AYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 888889999999999999999999999999999999999999999999999999865
No 42
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.27 E-value=0.16 Score=52.30 Aligned_cols=69 Identities=13% Similarity=0.266 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEE
Q 013305 58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (445)
Q Consensus 58 W~~G~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv 126 (445)
|-+=-++|.+-+-+.+++++..|.+.-+...-+-++.+.++...+|++|+++++|...++..+|+.++-
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 445556888877799999999999999999999999999999999999999999999999999988765
No 43
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=96.24 E-value=0.022 Score=56.97 Aligned_cols=121 Identities=12% Similarity=0.128 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC-CCC---------------CCCcccc-ccc-cccch-h----HHH
Q 013305 5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD-SDG---------------TNGKHSL-KPI-VHYHS-W----RVG 61 (445)
Q Consensus 5 ~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~-~~g---------------~~g~~~~-~~l-l~~p~-W----~~G 61 (445)
..|+.++++++++.+....++|+-..+.+...... ... .++.... .++ -.++. | +.|
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 36999999999999999999998643211100000 000 0000000 000 00111 2 234
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeE
Q 013305 62 ILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL 125 (445)
Q Consensus 62 ~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~li 125 (445)
++..+++..+++.++...+...+.++..+.=+++.+++.+++||+++..+++|.+++++|+.+.
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~ 285 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYIN 285 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 4445667777778888888888999999999999999999999999999999999999998754
No 44
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=96.08 E-value=0.091 Score=46.89 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHH-hhhcccccCChHHHHHHHHHHHHHHHhhheecCCCC
Q 013305 238 FSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGF-VYFQEYQVFDALRATMFILGTASVFIGISLLAPDES 313 (445)
Q Consensus 238 v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~-i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~ 313 (445)
+++...-..+++.+|++.|.+..+|+....+....+..-. ++|+|... .. -.+|.+++++||+++++++.
T Consensus 55 l~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls--~~----~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 55 LAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFS--LK----KTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--HH----HHHHHHHHHHHHHHhccCCC
Confidence 3344455556799999999999999998887555544443 58999753 33 45788999999999987654
No 45
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=95.91 E-value=0.36 Score=48.73 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh----hhhccccCC-CC-------CCCCCccccccccccchhHHHHHHHHHHHHHHHH
Q 013305 7 GAFINLVGSIAINFGTNLLKLGH----IEREKHSTL-DS-------DGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFI 74 (445)
Q Consensus 7 Gi~Lal~ss~l~a~G~~lqK~a~----~~~~~~~~~-~~-------~g~~g~~~~~~ll~~p~W~~G~~l~~~g~il~~~ 74 (445)
|+++++.+.++-++--...|.-. .+--.|..- +- .-.+..+..++..++|.=+..+.+..+=-..|..
T Consensus 8 Gil~~l~Ay~lwG~lp~y~kll~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~nW~ 87 (293)
T COG2962 8 GILLALLAYLLWGLLPLYFKLLEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGLNWW 87 (293)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 77888888887766655555321 110000000 00 0000123344567788777777766666666766
Q ss_pred HHhhhhhH---HHhhhchh-hHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEe
Q 013305 75 SFGYAAQS---LLAALGSV-QFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (445)
Q Consensus 75 Al~~ap~s---lV~PLgal-~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~ 127 (445)
-|-.+|-. +=+.+|=. .=++|++++..++|||+++.+|+++.+..+|+.....
T Consensus 88 lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~ 144 (293)
T COG2962 88 LFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW 144 (293)
T ss_pred HhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 67777654 33444432 2257999999999999999999999999999875433
No 46
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=95.58 E-value=0.022 Score=54.97 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC-CCC-CCCc--------cccccccccch---hHHHHHHHHHHHHH
Q 013305 5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD-SDG-TNGK--------HSLKPIVHYHS---WRVGILVFLLGNCL 71 (445)
Q Consensus 5 ~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~-~~g-~~g~--------~~~~~ll~~p~---W~~G~~l~~~g~il 71 (445)
..|+.+++.++++.++...++|+-. +.......- -.. .... ....+...... -+.|+...+++..+
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 231 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL 231 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999998654 110000000 000 0000 00000000001 13344444457888
Q ss_pred HHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEe
Q 013305 72 NFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (445)
Q Consensus 72 ~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~ 127 (445)
++.++...+...++++..+..+++.+++.++++|+++..+++|+++++.|+.+...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~ 287 (292)
T COG0697 232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL 287 (292)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999999999999999999999876543
No 47
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=95.57 E-value=0.15 Score=44.30 Aligned_cols=80 Identities=8% Similarity=0.020 Sum_probs=60.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHH
Q 013305 224 QLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFI 303 (445)
Q Consensus 224 qf~~w~tY~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~ 303 (445)
.|+++.+....+++ ...-.+++.++++.-|....+|+-...=+....+.|.++|+|..+ .. -.+|+.+++.
T Consensus 26 gf~~~~~~i~~~~~---~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~--~~----~~~gi~lIi~ 96 (110)
T PRK09541 26 GFTRLWPSVGTIIC---YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLD--LP----AIIGMMLICA 96 (110)
T ss_pred CCCchhHHHHHHHH---HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC--HH----HHHHHHHHHH
Confidence 36777766544333 344466789999999999999988888888889999999999754 33 3467788999
Q ss_pred hhheecCCC
Q 013305 304 GISLLAPDE 312 (445)
Q Consensus 304 GV~lLs~~~ 312 (445)
||+++....
T Consensus 97 GVi~l~l~~ 105 (110)
T PRK09541 97 GVLVINLLS 105 (110)
T ss_pred HHHHHhcCC
Confidence 999986543
No 48
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=95.37 E-value=0.018 Score=57.60 Aligned_cols=62 Identities=11% Similarity=-0.022 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEe
Q 013305 66 LLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (445)
Q Consensus 66 ~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~ 127 (445)
.++..+++.++...|.+.++++.-+.-+++.+++.+++||+++...++|++++++|+.++..
T Consensus 224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 36788889999999999999999999999999999999999999999999999888776653
No 49
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=95.01 E-value=0.36 Score=42.65 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=52.8
Q ss_pred HHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhheecCCCC
Q 013305 242 GFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDES 313 (445)
Q Consensus 242 l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~ 313 (445)
..-.+++.++++.-|..+.+|+....=++...+.|.++|+|..+ .. -.+|+.+++.||+++....+
T Consensus 41 ~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s--~~----~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 41 SLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLS--LM----KIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC--HH----HHHHHHHHHHHHHHhhcCCC
Confidence 34466789999999999999998888888889999999999754 33 34688889999999865543
No 50
>PRK11431 multidrug efflux system protein; Provisional
Probab=94.52 E-value=0.33 Score=41.92 Aligned_cols=79 Identities=16% Similarity=0.032 Sum_probs=59.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHH
Q 013305 223 YQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVF 302 (445)
Q Consensus 223 ~qf~~w~tY~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~ 302 (445)
+.|++|.++++.+++. ..-.++|.++++.-|....+++....=+....+.|.++|+|..+ +.+ .+|+.+++
T Consensus 24 ~gf~~~~~~~~~i~~~---~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~--~~~----~~gi~lIi 94 (105)
T PRK11431 24 HGFSRLTPSIITVTAM---IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESAS--PAR----LLSLALIV 94 (105)
T ss_pred hCCccHHHHHHHHHHH---HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCC--HHH----HHHHHHHH
Confidence 3577887776554443 34466789999999988888888877788888899999999754 333 36778889
Q ss_pred HhhheecC
Q 013305 303 IGISLLAP 310 (445)
Q Consensus 303 ~GV~lLs~ 310 (445)
.||+.|..
T Consensus 95 ~GVv~l~l 102 (105)
T PRK11431 95 AGIIGLKL 102 (105)
T ss_pred HHHHhhhc
Confidence 99998753
No 51
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=94.50 E-value=0.88 Score=45.86 Aligned_cols=78 Identities=14% Similarity=0.333 Sum_probs=60.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhh-hhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCC
Q 013305 55 YHSWRVGILVFLLGNCLNFISFGYA-AQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQ 132 (445)
Q Consensus 55 ~p~W~~G~~l~~~g~il~~~Al~~a-p~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~ 132 (445)
.+.|..=..++-..+++|=.|+.|. |.-+=--+=+-+++.|+.++..++|++-+.+++..++++.+|+++.-.+..++
T Consensus 64 lk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d 142 (330)
T KOG1583|consen 64 LKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKD 142 (330)
T ss_pred hhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcc
Confidence 3457777777777888888888876 22222223455899999999999999999999999999999988777766554
No 52
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=94.33 E-value=0.88 Score=43.84 Aligned_cols=61 Identities=11% Similarity=0.085 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEe
Q 013305 67 LGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (445)
Q Consensus 67 ~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~ 127 (445)
..+.+-..||.....+.+..+.+..--|..+++...||+++...+++.+++.+.|++++.+
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay 125 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAY 125 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEe
Confidence 3455667788899999999999999999999999999999999999999999999887765
No 53
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=94.30 E-value=0.39 Score=41.77 Aligned_cols=78 Identities=9% Similarity=0.068 Sum_probs=58.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHH
Q 013305 223 YQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVF 302 (445)
Q Consensus 223 ~qf~~w~tY~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~ 302 (445)
+.|++|.+.+..++.. ..=.++|.++++.-|....+++-...-+....+.|.++|+|..+ .. -.+|+.+++
T Consensus 30 ~gf~~~~~~~~~~~~~---~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~--~~----~~~gi~lIi 100 (109)
T PRK10650 30 DGFRRKIYGILSLAAV---LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLN--RK----GWIGLVLLL 100 (109)
T ss_pred cCCcchHHHHHHHHHH---HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCC--HH----HHHHHHHHH
Confidence 3477777765554433 33356789999999999888888888888899999999999754 33 336777888
Q ss_pred Hhhheec
Q 013305 303 IGISLLA 309 (445)
Q Consensus 303 ~GV~lLs 309 (445)
.||+.|.
T Consensus 101 ~GVi~lk 107 (109)
T PRK10650 101 AGMVMIK 107 (109)
T ss_pred HHHHHhc
Confidence 8888763
No 54
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=94.14 E-value=0.19 Score=52.30 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=54.5
Q ss_pred HHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCCC
Q 013305 74 ISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSP 134 (445)
Q Consensus 74 ~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~~ 134 (445)
.||++-.++-..=+.+.+=+|.++++.++.+||++..+.+++++.+.|++++.....++..
T Consensus 178 aALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~ 238 (416)
T KOG2765|consen 178 AALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNS 238 (416)
T ss_pred HHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccc
Confidence 6899999999999999999999999999999999999999999999998877776555433
No 55
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=94.01 E-value=0.073 Score=53.37 Aligned_cols=120 Identities=14% Similarity=0.145 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCC--CCC----ccc--cccccccchhH----HHHHHHHHHHHHH
Q 013305 5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDG--TNG----KHS--LKPIVHYHSWR----VGILVFLLGNCLN 72 (445)
Q Consensus 5 ~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g--~~g----~~~--~~~ll~~p~W~----~G~~l~~~g~il~ 72 (445)
..|+++++++++++++-...-|+.+........+.--| ..+ ..+ .+++ ..+.+| .|+. ..+++.+-
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Gi~-~~ia~~~y 228 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAFGVDGLSVLLPQAIGMVIGGIIFNLGHILAKPL-KKYAILLNILPGLM-WGIGNFFY 228 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCcceehhHHHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHH-HHHHHHHH
Confidence 46999999999999888888776531100000000000 000 000 0111 112333 5555 46777787
Q ss_pred HHHHh-hhhhHHHhhhchhhHHHHHHHHHHHhccccccchh----hhHHHhhhceeeEE
Q 013305 73 FISFG-YAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVL----VATAFIVLGNIFLV 126 (445)
Q Consensus 73 ~~Al~-~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~----~G~~lii~G~~liv 126 (445)
+.+.. ..+.+...++..+..+.+.+.+.+++||+.+++++ +|+++++.|+.++.
T Consensus 229 ~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 229 LFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 88888 89999999999999999999999999999999999 99999999987654
No 56
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=93.52 E-value=0.27 Score=43.57 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceee
Q 013305 68 GNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124 (445)
Q Consensus 68 g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~l 124 (445)
-++..+..+.........=++.+--+...+++.++++|+++..++.|.+++++|..+
T Consensus 94 ~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 94 YNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 344445666666666777788888899999999999999999999999999999764
No 57
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=93.43 E-value=0.67 Score=39.66 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=46.4
Q ss_pred HHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhheecCCCCC
Q 013305 243 FWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESK 314 (445)
Q Consensus 243 ~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~~ 314 (445)
........|+++.+ ..+.| .+...++++.+.|.++|+|.. +.. ..+|.+++++||.++.-++..
T Consensus 47 ~~~~~~~~a~~~~~-~~v~~-i~~~~pi~~~ll~~~~~~er~--~~~----~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 47 VAYLLFFYALSYAP-ALVAA-IFSLSPIFTALLSWLFFKERL--SPR----RWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHHHHhCc-HHHHH-HHHHHHHHHHHHHHHHhcCCC--CHH----HHHHHHHHHHHHHHHhhhhcc
Confidence 33444578888888 45554 455799999999999999854 444 345777888999998876544
No 58
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=93.20 E-value=0.67 Score=46.79 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEee
Q 013305 58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSF 128 (445)
Q Consensus 58 W~~G~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~ 128 (445)
...=.++.+.|..+..+.|-+..++--|-+-..-++|.-+++..+||++++.++|+|...+.+|.+.+...
T Consensus 89 fl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 89 FLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred ecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 34456788999999999999999999999999999999999999999999999999999999998877654
No 59
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=93.04 E-value=0.49 Score=48.87 Aligned_cols=130 Identities=14% Similarity=0.156 Sum_probs=79.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCC---------ccccccccccchhHHHHH-HHHHHHHHH
Q 013305 3 EWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNG---------KHSLKPIVHYHSWRVGIL-VFLLGNCLN 72 (445)
Q Consensus 3 ~~~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g---------~~~~~~ll~~p~W~~G~~-l~~~g~il~ 72 (445)
..++|-+++++|+++.|+..++|++-..+.++.+.-...|.-| --+... +++-.|=.... +++...++.
T Consensus 165 ~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~-i~~~~w~~~~~~~~v~~~~~l 243 (334)
T PF06027_consen 165 NPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSG-IESIHWTSQVIGLLVGYALCL 243 (334)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhh-hhccCCChhhHHHHHHHHHHH
Confidence 4578999999999999999999998765433221100000000 000000 11111222222 233444455
Q ss_pred HHHHhhhhhHHH------hhhch-hhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCC
Q 013305 73 FISFGYAAQSLL------AALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQS 133 (445)
Q Consensus 73 ~~Al~~ap~slV------~PLga-l~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~ 133 (445)
+.-|...|..+. .-++- ++-++++++..++.|++++..-++|.++|++|.++.....++++
T Consensus 244 f~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~ 311 (334)
T PF06027_consen 244 FLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEE 311 (334)
T ss_pred HHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccc
Confidence 777777777542 12222 24688999999999999999999999999999887766554443
No 60
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=92.15 E-value=1.1 Score=38.88 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=56.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHh
Q 013305 225 LHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIG 304 (445)
Q Consensus 225 f~~w~tY~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~G 304 (445)
|+++.++++.+++. ..-.++|.++++.-|....+++-.-.=+....+.|.++|+|..+ +. =.+|+.++++|
T Consensus 27 f~~~~~~il~~v~~---~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~--~~----~~~gl~LiiaG 97 (106)
T COG2076 27 FTRLWPSILTIVGY---GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLS--LI----KLLGLALILAG 97 (106)
T ss_pred ccccchHHHHHHHH---HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCC--HH----HHHHHHHHHHH
Confidence 55666655444433 33356789999999988888888888888888899999999754 33 34677788999
Q ss_pred hheecC
Q 013305 305 ISLLAP 310 (445)
Q Consensus 305 V~lLs~ 310 (445)
|+.|..
T Consensus 98 vi~Lk~ 103 (106)
T COG2076 98 VIGLKL 103 (106)
T ss_pred HHHhhh
Confidence 988754
No 61
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=91.92 E-value=1.4 Score=44.18 Aligned_cols=76 Identities=13% Similarity=0.075 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhheecCCCCCCC
Q 013305 238 FSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKGG 316 (445)
Q Consensus 238 v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~~~~ 316 (445)
++-++-|.. .=++.++--.+...|+-..+--+.+.+.|+++|+||... .+.+.-.++++++++|+++-+.++++++
T Consensus 53 ~~W~iGq~~-qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~--~~~~~G~~Al~liiiGv~lts~~~~~~~ 128 (269)
T PF06800_consen 53 AFWAIGQIG-QFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTT--TQKIIGFLALVLIIIGVILTSYQDKKSD 128 (269)
T ss_pred HHHHHHHHH-HHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCc--chHHHHHHHHHHHHHHHHHhcccccccc
Confidence 333444432 245666777888999999999999999999999999864 4566666788999999999887765544
No 62
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=91.90 E-value=0.79 Score=40.19 Aligned_cols=54 Identities=28% Similarity=0.242 Sum_probs=42.6
Q ss_pred hhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhhee
Q 013305 249 NEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLL 308 (445)
Q Consensus 249 N~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lL 308 (445)
.-.|...|-++.+|+.+..--+++++.|..+.+|...- + -.+|+.++++||.+.
T Consensus 59 ~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~---~---~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 59 FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISR---R---TWLGMALILAGVALC 112 (113)
T ss_pred HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccch---h---HHHHHHHHHcCeeee
Confidence 44677789999999999998899999998877776432 2 247888899998763
No 63
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=91.18 E-value=1.5 Score=36.61 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=30.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhccccc
Q 013305 225 LHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQV 285 (445)
Q Consensus 225 f~~w~tY~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~ 285 (445)
++++.+....++ +-..-.+++.+++++-|..+.+|+....=+....+.|..+|+|..+
T Consensus 26 ~~~~~~~~~~~~---~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s 83 (93)
T PF00893_consen 26 FTQLIPTILAVV---GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLS 83 (93)
T ss_dssp --------HHHH---HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-----
T ss_pred hcchhhHHHHHH---HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 455555443332 3344567889999999999999999988889999999999999754
No 64
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=90.84 E-value=0.31 Score=40.80 Aligned_cols=60 Identities=17% Similarity=0.226 Sum_probs=45.9
Q ss_pred HHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhhee
Q 013305 242 GFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLL 308 (445)
Q Consensus 242 l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lL 308 (445)
..-..+.++|+++.++..+.++.+ ..++.+.+.+.++++|..+ .. ..+|+.+++.|++++
T Consensus 65 ~~~~~~~~~a~~~~~~~~~~~~~~-~~pv~~~i~~~~~~~e~~~--~~----~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 65 ALAYLLYFYALKYISASIVSILQY-LSPVFAAILGWLFLGERPS--WR----QIIGIILIIIGVVLI 124 (126)
T ss_pred ehHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHHcCCCCC--HH----HHHHHHHHHHHHHHH
Confidence 333455689999999999998877 7999999999999999753 33 445666777777664
No 65
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=89.83 E-value=1.6 Score=41.53 Aligned_cols=122 Identities=11% Similarity=0.023 Sum_probs=78.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC---------------CCCCCCcc-cccc-ccc-cchhHHHHHH
Q 013305 3 EWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD---------------SDGTNGKH-SLKP-IVH-YHSWRVGILV 64 (445)
Q Consensus 3 ~~~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~---------------~~g~~g~~-~~~~-ll~-~p~W~~G~~l 64 (445)
....|+...+.+.++-++..+.|++..++++...... .....+.. ...+ ... .+.+|.=+++
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLL 161 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHH
Confidence 3456777777777777889999998855432110000 00000000 0000 011 1223333344
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceee
Q 013305 65 FLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124 (445)
Q Consensus 65 ~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~l 124 (445)
...+.++-...+.+++.....=...+..+++.+++.++++|+++...+.|+.++..|+.+
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 456666666788888888999999999999999999999999999999999999988653
No 66
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=89.31 E-value=0.29 Score=48.87 Aligned_cols=56 Identities=14% Similarity=0.228 Sum_probs=48.1
Q ss_pred HHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeE
Q 013305 70 CLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL 125 (445)
Q Consensus 70 il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~li 125 (445)
.+++.++...+.+...-.+.+.=++.++++.+++||+++..+++|.++++.|+.+.
T Consensus 236 ~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~ 291 (302)
T TIGR00817 236 QVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLY 291 (302)
T ss_pred HHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHH
Confidence 44456777888888888888888999999999999999999999999999998754
No 67
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=89.11 E-value=4.8 Score=40.38 Aligned_cols=57 Identities=11% Similarity=0.255 Sum_probs=49.1
Q ss_pred HHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeec
Q 013305 73 FISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFG 129 (445)
Q Consensus 73 ~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g 129 (445)
.-|+.+....-++-|-.-+++..++++.++||.|-+..++.|++.|++|+++++..-
T Consensus 96 V~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sD 152 (336)
T KOG2766|consen 96 VKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSD 152 (336)
T ss_pred eeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEee
Confidence 457777777788888888899999999999999999999999999999998777543
No 68
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=88.95 E-value=27 Score=35.07 Aligned_cols=84 Identities=12% Similarity=0.021 Sum_probs=49.1
Q ss_pred cchhHHHHHHHHH-HHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHH
Q 013305 224 QLHSWFTYSMLLL-FFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVF 302 (445)
Q Consensus 224 qf~~w~tY~llv~-~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~ 302 (445)
.+.+|....+-+. .+.+...--..-+-+|++-++. ..-+..+..+.++-+.|.++++|.. ++.+++.+.+ ++...
T Consensus 202 ~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~-~F~~LlSLePa~aAl~G~i~L~e~l--s~~qwlaI~~-ViaAs 277 (292)
T COG5006 202 ALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPAR-TFGTLLSLEPALAALSGLIFLGETL--TLIQWLAIAA-VIAAS 277 (292)
T ss_pred hhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChh-HHHHHHHhhHHHHHHHHHHHhcCCC--CHHHHHHHHH-HHHHH
Confidence 3455554433222 2333333333346677776554 5667788999999999999999975 4566654332 23345
Q ss_pred HhhheecCC
Q 013305 303 IGISLLAPD 311 (445)
Q Consensus 303 ~GV~lLs~~ 311 (445)
.|+.+=.++
T Consensus 278 aG~~lt~~~ 286 (292)
T COG5006 278 AGSTLTARK 286 (292)
T ss_pred hccccccCC
Confidence 555553333
No 69
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=87.99 E-value=17 Score=37.81 Aligned_cols=235 Identities=14% Similarity=0.081 Sum_probs=116.3
Q ss_pred HHHHHHHHHHhhhhhHHHhhhch-hhHHHHHHHHHHHhcc-------ccccchhhhHHHhhhceeeEEeecCCCCCCCCH
Q 013305 67 LGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNK-------MVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTP 138 (445)
Q Consensus 67 ~g~il~~~Al~~ap~slV~PLga-l~lv~~~l~a~~~l~E-------~~~~~~~~G~~lii~G~~liv~~g~~~~~~~t~ 138 (445)
+|.+.--.+..+.-.|+-+...- ++.++..++-..+.++ +-....++|++++++|++++...|...+.+.+.
T Consensus 85 IGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~ 164 (344)
T PF06379_consen 85 IGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELGE 164 (344)
T ss_pred cchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhcc
Confidence 34444445555666666555433 4445555554555432 223455789999999999888877654444332
Q ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhcccc---ccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 013305 139 EQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENL---LAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLL 215 (445)
Q Consensus 139 ~eL~~~~~~~~fl~y~~i~iviv~l~~~~~r~~~~~---~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~aK~~~~ll 215 (445)
+ -.|.-...+.++-+..-+.-.|+.+ ....++.. ....|.++ -+..+...+. =+.||+..=+.=++-...
T Consensus 165 ~-~~efn~~kGl~iAv~sGv~Sa~fn~-g~~ag~pi~~~a~a~G~~~-l~~~l~~~vv----v~~GGf~tN~~yc~~~l~ 237 (344)
T PF06379_consen 165 E-AKEFNFKKGLIIAVLSGVMSACFNF-GLDAGKPIHEAAVAAGVNP-LYANLPVYVV----VLWGGFITNLIYCLILLA 237 (344)
T ss_pred c-hhhhhhhhhHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHcCCCc-HHHhCchhhh----hhhhHHHHHHHHHHHHHh
Confidence 2 1221112222211111111112221 11111111 01112211 1111111111 233555554554544433
Q ss_pred H-HHhc--cCccc-hhH--HHHHHHHHHHHHHHHHHHHHhhhhcc-cc--cceehhhHHHHHHHHHHHHHHhhhcccccC
Q 013305 216 R-LAMS--NGYQL-HSW--FTYSMLLLFFSTAGFWMARLNEGLSL-FD--AILIVPMFQIAWTSFSICTGFVYFQEYQVF 286 (445)
Q Consensus 216 ~-~ti~--g~~qf-~~w--~tY~llv~~v~~~l~Ql~~LN~aL~~-~d--a~~VvPv~~v~~t~~si~~G~i~f~E~~~~ 286 (445)
+ .+.+ +|... +++ .-|++.++.-+.=-.|..|.-.|=.. .+ ....-++...+..+++.+.| +.++||.+.
T Consensus 238 ~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwG-l~lkEWKg~ 316 (344)
T PF06379_consen 238 KNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWG-LILKEWKGA 316 (344)
T ss_pred hcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHH-HHHHHhccC
Confidence 2 1222 22111 121 22444444444455777665444332 22 24467788888888888877 568999999
Q ss_pred ChHHHHHHHHHHHHHHHhhheec
Q 013305 287 DALRATMFILGTASVFIGISLLA 309 (445)
Q Consensus 287 ~~~~~~~~~~G~~vi~~GV~lLs 309 (445)
+......+.+|+++++..+.++.
T Consensus 317 s~kt~~vl~~G~~vlI~s~~ivG 339 (344)
T PF06379_consen 317 SKKTIRVLVLGIAVLILSVVIVG 339 (344)
T ss_pred CcccHHHHHHHHHHHHHHHHHHh
Confidence 88777888999988888877654
No 70
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=86.72 E-value=0.48 Score=46.95 Aligned_cols=223 Identities=17% Similarity=0.189 Sum_probs=119.8
Q ss_pred ccccchhHHHHHHH---HHHHHHHHHHHhhhhhHHHhhhch-hhHHHHHHHHHHHhccccccch----hhhHHHhhhcee
Q 013305 52 IVHYHSWRVGILVF---LLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKV----LVATAFIVLGNI 123 (445)
Q Consensus 52 ll~~p~W~~G~~l~---~~g~il~~~Al~~ap~slV~PLga-l~lv~~~l~a~~~l~E~~~~~~----~~G~~lii~G~~ 123 (445)
.+.-..|..|++-- .+|+..||-|+.+.-.|...|+.. .+++-+.+++.+.+||=-+..+ .++.++++.|+.
T Consensus 53 ~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~ 132 (288)
T COG4975 53 ELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIY 132 (288)
T ss_pred ccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhhe
Confidence 33344577777644 469999999999999999999987 7899999999999999766555 335678888877
Q ss_pred eEEeecCCCCCCCCHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhH
Q 013305 124 FLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSF 203 (445)
Q Consensus 124 liv~~g~~~~~~~t~~eL~~~~~~~~fl~y~~i~iviv~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~ 203 (445)
+-..-.+.+.++.+++.+. +..+.+.+.-+.+..|-.-.+. +. +.|.
T Consensus 133 lTs~~~~~nk~~~~~~n~k----------kgi~~L~iSt~GYv~yvvl~~~----------------f~-------v~g~ 179 (288)
T COG4975 133 LTSKQDRNNKEEENPSNLK----------KGIVILLISTLGYVGYVVLFQL----------------FD-------VDGL 179 (288)
T ss_pred EeeeeccccccccChHhhh----------hheeeeeeeccceeeeEeeecc----------------cc-------ccch
Confidence 6655433223333443332 2111111111111111100000 00 2333
Q ss_pred HHHHHHHHHHHHHH---HhccCccchhHHHHHHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhh
Q 013305 204 SVLFAKSLSNLLRL---AMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYF 280 (445)
Q Consensus 204 svl~aK~~~~ll~~---ti~g~~qf~~w~tY~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f 280 (445)
++++-.+++-.+-- +..+.+...+-.+|.-++..+.-+.--+.++-.+=..+-++- ..+-|. -.+.+.++|+.++
T Consensus 180 saiLPqAiGMv~~ali~~~~~~~~~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~-FSlSQl-gViisTiGGIl~L 257 (288)
T COG4975 180 SAILPQAIGMVIGALILGFFKMEKRFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATS-FSLSQL-GVIISTIGGILFL 257 (288)
T ss_pred hhhhHHHHHHHHHHHHHhhcccccchHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeee-eeHhhh-eeeeeecceEEEE
Confidence 44444443322211 111222333444555444443333322222211111111110 001110 1125677899999
Q ss_pred cccccCChHHHHHHHHHHHHHHHhhheecCC
Q 013305 281 QEYQVFDALRATMFILGTASVFIGISLLAPD 311 (445)
Q Consensus 281 ~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~ 311 (445)
+|.. +...+.....|++++++|..+|.--
T Consensus 258 ~ekK--tkkEm~~v~iGiilivvgai~lg~~ 286 (288)
T COG4975 258 GEKK--TKKEMVYVIIGIILIVVGAILLGIA 286 (288)
T ss_pred eccC--chhhhhhhhhhHHHHHHHhhhhhee
Confidence 9986 4678888999999999998887654
No 71
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.68 E-value=2.8 Score=35.95 Aligned_cols=105 Identities=16% Similarity=0.268 Sum_probs=64.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHH---HHHHh
Q 013305 1 MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLN---FISFG 77 (445)
Q Consensus 1 m~~~~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~~G~~l~~~g~il~---~~Al~ 77 (445)
|+.++--++|-++|++++.++ =++|.+....+ -.... --.|=+.++=|.+..-.| -..|+
T Consensus 5 ~~~~l~~vlLL~~SNvFMTFA----WYghLk~~~~p----------l~~~i---~~SWGIA~fEY~LqvPaNRiG~~v~s 67 (116)
T COG3169 5 MSVYLYPVLLLIGSNVFMTFA----WYGHLKFTNKP----------LVIVI---LASWGIAFFEYLLQVPANRIGHQVYS 67 (116)
T ss_pred CchHHHHHHHHHhhHHHHHHH----HHHHHhccCCc----------hhHHH---HHHhhHHHHHHHHhCccchhhhhhcc
Confidence 678888899999999999887 57877632110 00000 113444444343322222 23344
Q ss_pred hhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceee
Q 013305 78 YAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124 (445)
Q Consensus 78 ~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~l 124 (445)
.+.+-..|- .+++..-++++.++++|+++...+.|.+++..|+.+
T Consensus 68 ~~QLK~mQE--VItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~f 112 (116)
T COG3169 68 AAQLKTMQE--VITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYF 112 (116)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 444444443 356777788999999999999999988888777654
No 72
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=85.09 E-value=5 Score=34.75 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=39.4
Q ss_pred HHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCC
Q 013305 83 LLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH 131 (445)
Q Consensus 83 lV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~ 131 (445)
+-+.-|.+=++.+++-..+.-|.++++.||.|.++|.+|+. ++.++|.
T Consensus 60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~-vil~~pR 107 (109)
T COG1742 60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVA-VILFGPR 107 (109)
T ss_pred HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhcee-eeEeCCC
Confidence 45667778788888888888899999999999999999955 5556654
No 73
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=83.86 E-value=0.6 Score=40.53 Aligned_cols=77 Identities=18% Similarity=0.299 Sum_probs=60.8
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhch-hhHHHHHHHHHHHhccccc-cchhhhHHHhhhceeeEE
Q 013305 49 LKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVT-VKVLVATAFIVLGNIFLV 126 (445)
Q Consensus 49 ~~~ll~~p~W~~G~~l~~~g~il~~~Al~~ap~slV~PLga-l~lv~~~l~a~~~l~E~~~-~~~~~G~~lii~G~~liv 126 (445)
.+.++.+-..|+=+++---|..+-+.-|+-+|.++..|+.. +++.|+.+++.. |+|+.. ++.+.|+.+++.|+.+.+
T Consensus 46 ~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~-LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 46 MKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKA-LGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHH-hccccccceeehhhhHHhhhhhhee
Confidence 34455555667788888788888889999999999999864 789999999966 577665 555779999999987654
No 74
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=82.14 E-value=3 Score=41.70 Aligned_cols=124 Identities=14% Similarity=0.083 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCC-C---------CCCcccccccccc-chhHHHHHHHHH----HH
Q 013305 5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSD-G---------TNGKHSLKPIVHY-HSWRVGILVFLL----GN 69 (445)
Q Consensus 5 ~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~-g---------~~g~~~~~~ll~~-p~W~~G~~l~~~----g~ 69 (445)
.+|+.+|+.+..|-+.=.++=||..... ++...-. | .-|...-.+.+.+ +.-..++.+-++ =+
T Consensus 147 p~Gv~~Al~AG~~Wa~YIv~G~r~g~~~--~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPY 224 (292)
T COG5006 147 PVGVALALGAGACWALYIVLGQRAGRAE--HGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPY 224 (292)
T ss_pred HHHHHHHHHHhHHHHHHHHHcchhcccC--CCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccch
Confidence 5799999999998887777767665311 1100000 0 0000011111222 233444444444 45
Q ss_pred HHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecC
Q 013305 70 CLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGN 130 (445)
Q Consensus 70 il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~ 130 (445)
.+..+|+...|...-.-|.++.=.+..+.+..+|||+++..+|+|+++++.++........
T Consensus 225 sLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~ 285 (292)
T COG5006 225 SLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTAR 285 (292)
T ss_pred HHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccC
Confidence 6778999999999999999999999999999999999999999999999998875554333
No 75
>PRK02237 hypothetical protein; Provisional
Probab=79.37 E-value=6.4 Score=34.29 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=38.5
Q ss_pred HHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCC
Q 013305 83 LLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH 131 (445)
Q Consensus 83 lV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~ 131 (445)
+-+.-|.+=++.+++-...+-|++.++.|++|.++|.+|+.++. ++|+
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~-~~pR 108 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIM-YAPR 108 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhe-ecCC
Confidence 44555666677788889999999999999999999999987554 5553
No 76
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=77.99 E-value=9.2 Score=38.85 Aligned_cols=118 Identities=17% Similarity=0.096 Sum_probs=69.0
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHH-Hhc-cCccch---hHHHHHHHHHHHHHHHHHHHHHhhhhcccccceehhh
Q 013305 189 LPFSYAIVSGAVGSFSVLFAKSLSNLLRL-AMS-NGYQLH---SWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPM 263 (445)
Q Consensus 189 ~~l~y~~~sGllgg~svl~aK~~~~ll~~-ti~-g~~qf~---~w~tY~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv 263 (445)
.++..+.+++++.+....+.|-....... ... +.+... +|.-|.=++..+...+.+ =-|+...++++|-|+
T Consensus 7 iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~----~~Al~~ap~slv~Pl 82 (300)
T PF05653_consen 7 IGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILN----FVALGFAPASLVAPL 82 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHH----HHHHHhhhHHHHHHH
Confidence 56778888888888887777765444332 010 111122 222222222222233333 247777889999998
Q ss_pred HHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhheecCCCCCCCC
Q 013305 264 FQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKGGE 317 (445)
Q Consensus 264 ~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~~~~~ 317 (445)
--+. .+++.+.+-.+++|..+. . -.+|+++++.|+.++....+++++
T Consensus 83 g~~~-lv~~~~~a~~~l~e~~~~--~----~~~G~~l~i~G~~liv~~~~~~~~ 129 (300)
T PF05653_consen 83 GALS-LVFNAVLARFFLGEKLTR--R----DIVGCALIILGSVLIVIFAPKEEP 129 (300)
T ss_pred Hhhh-hhhHHHHhHHHhcccchH--h----HHhhHHHHHhhheeeEEeCCCCCC
Confidence 6544 446666677778886542 2 247788888898887666555443
No 77
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=77.97 E-value=4.4 Score=40.63 Aligned_cols=120 Identities=14% Similarity=0.131 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC----C---------------CCCCCccccccccccchhHHHHHH
Q 013305 4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD----S---------------DGTNGKHSLKPIVHYHSWRVGILV 64 (445)
Q Consensus 4 ~~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~----~---------------~g~~g~~~~~~ll~~p~W~~G~~l 64 (445)
+..|+++.+++-++.++-.++|++-..+.+.+..+. + .+ +.....+-..+.|..+.-+++
T Consensus 152 ~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~-~~~~~~~f~~~~p~~~~~l~~ 230 (303)
T PF08449_consen 152 SALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTG-EFRSAIRFISAHPSVLLYLLL 230 (303)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhh-HhhHHHHHHHHhHHHHHHHHH
Confidence 456999999999999999999998876544332110 0 00 000000111223333333333
Q ss_pred H-HHHHHHHHHHH---hhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceee
Q 013305 65 F-LLGNCLNFISF---GYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124 (445)
Q Consensus 65 ~-~~g~il~~~Al---~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~l 124 (445)
. +.+.+++...+ ..-......-...+--+.+++++.++.+++++...|.|.+++..|..+
T Consensus 231 ~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~ 294 (303)
T PF08449_consen 231 FSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFL 294 (303)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHH
Confidence 3 33444443222 122222334444455677888999999999999999999999888653
No 78
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=77.66 E-value=3.9 Score=42.12 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=39.3
Q ss_pred HHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceee
Q 013305 75 SFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124 (445)
Q Consensus 75 Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~l 124 (445)
.+...+..-..=.+.+.=++..+++.+++||+++..+++|++++++|+.+
T Consensus 296 ~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~l 345 (350)
T PTZ00343 296 CLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALL 345 (350)
T ss_pred HHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence 44445454444455556688999999999999999999999999999865
No 79
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=76.30 E-value=8.4 Score=38.39 Aligned_cols=49 Identities=18% Similarity=0.223 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHh-----hhcccccCChHHHHHHHHHHHHHHHhhheecCCCCCC
Q 013305 266 IAWTSFSICTGFV-----YFQEYQVFDALRATMFILGTASVFIGISLLAPDESKG 315 (445)
Q Consensus 266 v~~t~~si~~G~i-----~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~~~ 315 (445)
-+|..++++.|.+ +|++..+ .+..-.+-.+|++++++|..+.+.-|++.
T Consensus 86 liW~s~n~l~Gw~~grfGlFg~~~~-~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 86 LIWGSVNCLTGWASGRFGLFGLDPQ-VPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred HHHHHHHHHHHHHHhhceecccccc-ccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 4566677777765 6776554 34455667778888888877776655443
No 80
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=75.94 E-value=6.4 Score=34.18 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=38.4
Q ss_pred HHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecC
Q 013305 83 LLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGN 130 (445)
Q Consensus 83 lV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~ 130 (445)
+-+.-|.+=++.+++-...+-|++.++.|++|..+|.+|+.++. ++|
T Consensus 59 vYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~-~~P 105 (107)
T PF02694_consen 59 VYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIIL-FAP 105 (107)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheE-ecC
Confidence 44555667778888889999999999999999999999987554 454
No 81
>PRK13499 rhamnose-proton symporter; Provisional
Probab=74.01 E-value=12 Score=39.05 Aligned_cols=70 Identities=10% Similarity=0.025 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhccccc-CChHHHHHHHHHHHHHHHhhheecC
Q 013305 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQV-FDALRATMFILGTASVFIGISLLAP 310 (445)
Q Consensus 240 ~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~-~~~~~~~~~~~G~~vi~~GV~lLs~ 310 (445)
-.+-|+.+ =++.+.--.+.-.|+....-.+.+.+.+.++|+||.. .+..+.....+|++++++|+.+-+.
T Consensus 83 W~iG~i~~-~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 83 WGIGGITY-GLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHhhhhhH-HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 34444433 3455666677788998888889999999999999972 2334555688999999999999887
No 82
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=70.00 E-value=58 Score=32.57 Aligned_cols=209 Identities=13% Similarity=0.135 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhhchhh----HHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCC----C
Q 013305 63 LVFLLGNCLNFISFGYAAQSLLAALGSVQ----FVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQS----P 134 (445)
Q Consensus 63 ~l~~~g~il~~~Al~~ap~slV~PLgal~----lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~----~ 134 (445)
..|.++.+..=-|+.+.|. |-+.++ =+=.++++..+.|.+-.+++...+++|++|++++..--++-. .
T Consensus 93 ~sYLlAMVssN~Alq~vpY----PTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~ 168 (337)
T KOG1580|consen 93 ASYLLAMVSSNQALQYVPY----PTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDK 168 (337)
T ss_pred HHHHHHHHhccchhcccCC----cHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCccc
Confidence 3344444444455666653 333332 233566777888999999999999999999999887533221 1
Q ss_pred CCCHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 013305 135 VYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNL 214 (445)
Q Consensus 135 ~~t~~eL~~~~~~~~fl~y~~i~iviv~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~aK~~~~l 214 (445)
..-..|+. +.+.+. .=.+.-.+..|-+......|+.- .+..-.-|.+.-|...+++-.+=+.
T Consensus 169 t~g~GElL---------L~lSL~--mDGlTg~~Qdrira~yq~~g~~M-------M~~~NlwStL~Lg~g~lfTGElweF 230 (337)
T KOG1580|consen 169 TFGFGELL---------LILSLA--MDGLTGSIQDRIRASYQRTGTSM-------MFYTNLWSTLYLGAGLLFTGELWEF 230 (337)
T ss_pred ccchHHHH---------HHHHHH--hcccchhHHHHHHHhhccCchhh-------HHHHHHHHHHHhhhhheehhhHHHH
Confidence 12222220 000000 00000001101010111123321 1111122333334444443222222
Q ss_pred HHHHhccCccchhHHHH-HHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHH
Q 013305 215 LRLAMSNGYQLHSWFTY-SMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATM 293 (445)
Q Consensus 215 l~~ti~g~~qf~~w~tY-~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~ 293 (445)
+-- .-.||..| =+.++.++..+.| +|.=+-...|.+. .+.+....--+++|+.++++|+.. .++.++
T Consensus 231 ~yF------~~RhP~~~~~l~l~ai~s~LGQ-~fIF~tv~~FgPL-tCSivTTTRKfFTil~SVllf~np--ls~rQw-- 298 (337)
T KOG1580|consen 231 FYF------VQRHPYVFWDLTLLAIASCLGQ-WFIFKTVEEFGPL-TCSIVTTTRKFFTILISVLLFNNP--LSGRQW-- 298 (337)
T ss_pred HHH------HHhccHHHHHHHHHHHHHHhhh-HHHHHHHHHhCCe-eEEEEeehHHHHHHHHHHHHhcCc--CcHHHH--
Confidence 111 11355443 3444445555555 5555555566554 334444455678899999999975 455555
Q ss_pred HHHHHHHHHHhhhe
Q 013305 294 FILGTASVFIGISL 307 (445)
Q Consensus 294 ~~~G~~vi~~GV~l 307 (445)
+|.++++.|..+
T Consensus 299 --lgtvlVF~aL~~ 310 (337)
T KOG1580|consen 299 --LGTVLVFSALTA 310 (337)
T ss_pred --HHHHHHHHHhhh
Confidence 466666665543
No 83
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=69.62 E-value=33 Score=35.25 Aligned_cols=75 Identities=12% Similarity=0.166 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCC
Q 013305 57 SWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQ 132 (445)
Q Consensus 57 ~W~~G~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~ 132 (445)
+|.+++. -.++.-++..||.+...-...=-=+.=++=.++...++-+.|.+..|.+-+.+|.+|+.++..+.+.+
T Consensus 86 y~~is~t-n~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 86 YSLISFT-NTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HhHHHHH-hhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 3555544 45788888899988865433333344577788889999999999999999999999999999986655
No 84
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=64.56 E-value=19 Score=31.32 Aligned_cols=93 Identities=18% Similarity=0.333 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHH---HHHHHHHHH-------HH
Q 013305 7 GAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVF---LLGNCLNFI-------SF 76 (445)
Q Consensus 7 Gi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~~G~~l~---~~g~il~~~-------Al 76 (445)
-+.|-++|++++.++ =++|.|..++ +|.|.+=++.- .....++.= .+
T Consensus 3 ti~LL~~SN~FMTfA----WYGHLK~~~~-------------------~pl~~ail~SWgIAffEY~l~VPANRiG~~~~ 59 (108)
T PF04342_consen 3 TILLLILSNIFMTFA----WYGHLKFKSS-------------------KPLWIAILISWGIAFFEYCLQVPANRIGYQTF 59 (108)
T ss_pred hhHHHHHHHHHHHHH----HHHHhhcccc-------------------CcHHHHHHHHHHHHHHHHHHhCcchhhhcccc
Confidence 357788999999887 5888764211 13343222111 122233321 12
Q ss_pred hhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceee
Q 013305 77 GYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124 (445)
Q Consensus 77 ~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~l 124 (445)
+.+.+-+.|= ++++..-.+++.+++||+++.....|-++++.++..
T Consensus 60 s~~QLKi~QE--vitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 60 SLAQLKIIQE--VITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred CHHHHHHHHH--HHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 2233333332 234555567788999999999999988888666543
No 85
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=63.22 E-value=1.2e+02 Score=28.67 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=40.5
Q ss_pred HHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhhe
Q 013305 244 WMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISL 307 (445)
Q Consensus 244 Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~l 307 (445)
|-.+.+-.++++|++ ..-+....-.+.+.+.+..+|+|.. +.. ..+|..+++.|+++
T Consensus 165 ~~~~v~~vlk~~~~~-~~~~~~~~~~~~s~lls~~~f~~~l--s~~----~~~g~~lV~~~~~l 221 (222)
T TIGR00803 165 GGLCIGGVVRYADNT-TKSFVTALSIILSTLASVRLFDAKI--SST----FYLGAILVFLATFL 221 (222)
T ss_pred cCceeeehhHHhHHH-HHHHHHHHHHHHHHHHHHHHhcCCc--cHH----HHHHHHHHHeeeEe
Confidence 444567788888888 6666677778888888999999753 322 55677777777654
No 86
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=62.55 E-value=67 Score=31.57 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc--------------------CCCCCCCCCccccccccccchhHHHHH
Q 013305 4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKHS--------------------TLDSDGTNGKHSLKPIVHYHSWRVGIL 63 (445)
Q Consensus 4 ~~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~--------------------~~~~~g~~g~~~~~~ll~~p~W~~G~~ 63 (445)
..+|+++.++++++.+++-+...|-.++.+..- ..+.......+.+..+ ++.-|.=+.
T Consensus 112 ~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~--~~~~~~~i~ 189 (244)
T PF04142_consen 112 PLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGY--SWWVWIVIF 189 (244)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhc--chHHHHHHH
Confidence 568999999999999999888877765432110 0000000000111111 111122222
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHH
Q 013305 64 VFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAF 117 (445)
Q Consensus 64 l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~l 117 (445)
+..+|-++-...+.++.-.+=.=-.+++++.+.+++.++++.+++..-.+|+.+
T Consensus 190 ~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 190 LQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 234444444556666666655555667888899999999999988887777654
No 87
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=62.21 E-value=11 Score=37.61 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=53.4
Q ss_pred HHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhheecCCC
Q 013305 241 AGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDE 312 (445)
Q Consensus 241 ~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~ 312 (445)
.+-|+.- =||.+.-..+...|+-..+--+.+.+.|++.||||.. +.+.+.=..++++++.|+++=+.++
T Consensus 70 s~GQ~~Q-fka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t--~~~~IlG~iAliliviG~~lTs~~~ 138 (288)
T COG4975 70 SFGQANQ-FKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTT--PTQIILGFIALILIVIGIYLTSKQD 138 (288)
T ss_pred hhhhhhh-hhheeeeeeeccccccchhhHhhceeeeEEEEeccCc--chhHHHHHHHHHHHHHhheEeeeec
Confidence 3445433 3577777788889999999999999999999999975 4566666677788999999866554
No 88
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=60.83 E-value=81 Score=32.64 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=49.0
Q ss_pred HHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEe
Q 013305 73 FISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (445)
Q Consensus 73 ~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~ 127 (445)
=+++.+.|+++-+-.=+-+++|-++|+..+-=|+++..-..=+.+|.+|+.+++.
T Consensus 102 N~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~ 156 (349)
T KOG1443|consen 102 NWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTY 156 (349)
T ss_pred cceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEe
Confidence 3789999999999999999999999998887899998888888899999888776
No 89
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=59.10 E-value=20 Score=32.25 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhhhchh-hHHHHHHHHHH----HhccccccchhhhHHHhhhceee
Q 013305 59 RVGILVFLLGNCLNFISFGYAAQSLLAALGSV-QFVSNIAFSYF----VFNKMVTVKVLVATAFIVLGNIF 124 (445)
Q Consensus 59 ~~G~~l~~~g~il~~~Al~~ap~slV~PLgal-~lv~~~l~a~~----~l~E~~~~~~~~G~~lii~G~~l 124 (445)
|.|-++-++--.++.........+...-+... +++.++++-++ .-+++++.++++|.+++++|+.+
T Consensus 68 ~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 68 YLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred hccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 44444333444444444444444443333333 46777777776 45689999999999999999753
No 90
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=58.65 E-value=7 Score=40.18 Aligned_cols=69 Identities=16% Similarity=0.274 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEe
Q 013305 58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (445)
Q Consensus 58 W~~G~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~ 127 (445)
-..|.. +.+|-++.-.||...|++..|-+-++.-++.+++++++.+|+.++..+.-.+.++.|+.+-..
T Consensus 87 lpl~~~-~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~ 155 (316)
T KOG1441|consen 87 LPLGLV-FCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV 155 (316)
T ss_pred HHHHHH-HHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee
Confidence 445544 457888888999999999999999999999999999999999999999988888889776554
No 91
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=52.73 E-value=51 Score=34.86 Aligned_cols=124 Identities=11% Similarity=0.014 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhh-ccccCCCCCCCCC---------------------ccccccccccchhHHH
Q 013305 4 WVIGAFINLVGSIAINFGTNLLKLGHIER-EKHSTLDSDGTNG---------------------KHSLKPIVHYHSWRVG 61 (445)
Q Consensus 4 ~~IGi~Lal~ss~l~a~G~~lqK~a~~~~-~~~~~~~~~g~~g---------------------~~~~~~ll~~p~W~~G 61 (445)
-.+|-+++++||+++++=.++.||-.-++ ++-..+---|--| ...+...--.-.-..|
T Consensus 245 ~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ 324 (416)
T KOG2765|consen 245 PLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNN 324 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhh
Confidence 37899999999999999999998875443 2221100000000 0000000000113566
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEe
Q 013305 62 ILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (445)
Q Consensus 62 ~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~ 127 (445)
++--+++..+|..|...-.-.+++-=.++++..+++.-..+-+.+.+...++|.+.|.+|-+++-+
T Consensus 325 ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~ 390 (416)
T KOG2765|consen 325 LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNI 390 (416)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheec
Confidence 676778888998877776665666666688888888887777889999999999999999776544
No 92
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=49.33 E-value=69 Score=30.80 Aligned_cols=91 Identities=16% Similarity=0.178 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHH---HHHhhhhh
Q 013305 5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNF---ISFGYAAQ 81 (445)
Q Consensus 5 ~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~~G~~l~~~g~il~~---~Al~~ap~ 81 (445)
..|++..++.++..++..-+..+=.-+. +. | --+||.||=+++..++..++|. ++-+|.|.
T Consensus 124 ~~GlItlll~a~vgGfamy~my~y~yr~-~a---d------------~sqr~~~~K~~lv~~~sm~lWi~v~i~t~~lPt 187 (226)
T COG4858 124 VYGLITLLLTAVVGGFAMYIMYYYAYRM-RA---D------------NSQRPGTWKYLLVAVLSMLLWIAVMIATVFLPT 187 (226)
T ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHHh-hc---c------------cccCCchHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 4466666666666666655544332221 11 0 0136789999999988988884 56677888
Q ss_pred HHHhhhc--hhhHHHHHHHH-HHHhccccccch
Q 013305 82 SLLAALG--SVQFVSNIAFS-YFVFNKMVTVKV 111 (445)
Q Consensus 82 slV~PLg--al~lv~~~l~a-~~~l~E~~~~~~ 111 (445)
++=.-|- ++.++-.++++ +|+++++.+...
T Consensus 188 slN~~L~pi~l~IiGav~lalRfylkkk~NIqs 220 (226)
T COG4858 188 SLNPQLPPIALTIIGAVILALRFYLKKKKNIQS 220 (226)
T ss_pred cCCcCCchHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 7533333 34445455444 777888877553
No 93
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=44.83 E-value=3.7e+02 Score=30.26 Aligned_cols=58 Identities=10% Similarity=0.034 Sum_probs=32.0
Q ss_pred ccccccc-hhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccc
Q 013305 50 KPIVHYH-SWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVT 108 (445)
Q Consensus 50 ~~ll~~p-~W~~G~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~ 108 (445)
.+++-|+ .-+.|.+++++|.+....|-......--+-+..++.-.+.+ ......|-++
T Consensus 102 SDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p 160 (599)
T PF06609_consen 102 SDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVP 160 (599)
T ss_pred HHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcc
Confidence 3444443 34667777788999887776665555444444444333332 2334566544
No 94
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=39.05 E-value=3.2e+02 Score=28.06 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCCCCCCH
Q 013305 91 QFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTP 138 (445)
Q Consensus 91 ~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~~~~t~ 138 (445)
-++=.++.+.++-+.|-...|..+..+.++|.+.+-+.-++..+.++.
T Consensus 142 KliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~ 189 (367)
T KOG1582|consen 142 KLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNL 189 (367)
T ss_pred hhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcce
Confidence 345556667777888999999999999999999888776666666653
No 95
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.13 E-value=4.7 Score=40.79 Aligned_cols=59 Identities=19% Similarity=0.270 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhcee
Q 013305 65 FLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNI 123 (445)
Q Consensus 65 ~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~ 123 (445)
++++-..|-..|.+.|++.-+-=-++..+|++++.+.+||++-+..-..+|.+|++|-.
T Consensus 112 fi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~ 170 (347)
T KOG1442|consen 112 FILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFG 170 (347)
T ss_pred eeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhe
Confidence 34444455566788888776666678899999999999999988888889999888843
No 96
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=35.51 E-value=59 Score=26.44 Aligned_cols=47 Identities=15% Similarity=0.073 Sum_probs=32.9
Q ss_pred ceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHh
Q 013305 258 ILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIG 304 (445)
Q Consensus 258 ~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~G 304 (445)
..++|+.|++-.++-++.+..-+....+-++..++..+.++...+-|
T Consensus 14 mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G 60 (76)
T PF11970_consen 14 MFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQG 60 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccC
Confidence 56788888888888888888777744444555566666666666655
No 97
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=35.19 E-value=24 Score=31.47 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=24.5
Q ss_pred ccCChHHHHHHHHHHHHHHHhhheecCC
Q 013305 284 QVFDALRATMFILGTASVFIGISLLAPD 311 (445)
Q Consensus 284 ~~~~~~~~~~~~~G~~vi~~GV~lLs~~ 311 (445)
.+-++|++.++++.++++++|+++|.++
T Consensus 30 ED~tpWNysiL~Ls~vvlvi~~~LLgrs 57 (125)
T PF15048_consen 30 EDATPWNYSILALSFVVLVISFFLLGRS 57 (125)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999999865
No 98
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=35.11 E-value=3e+02 Score=26.92 Aligned_cols=18 Identities=17% Similarity=0.325 Sum_probs=10.7
Q ss_pred hhHHHHHHHhhhhhHHHH
Q 013305 189 LPFSYAIVSGAVGSFSVL 206 (445)
Q Consensus 189 ~~l~y~~~sGllgg~svl 206 (445)
+-+....++|++||+.-.
T Consensus 10 ~~~~~illg~~iGg~~G~ 27 (248)
T PF11368_consen 10 RFLLLILLGGLIGGFIGF 27 (248)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566666666666544
No 99
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=33.85 E-value=2.4e+02 Score=24.85 Aligned_cols=75 Identities=24% Similarity=0.220 Sum_probs=45.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHH
Q 013305 223 YQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVF 302 (445)
Q Consensus 223 ~qf~~w~tY~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~ 302 (445)
+.|.+|+.+.-+.+--+... +||+. |++.+-++.+|+.+..-..++..-|..+=.|... -..++|..+++
T Consensus 48 tl~l~w~Y~iPFllNqcgSa--ly~~t--La~a~islavpv~nsltfafta~~G~~LGE~~~g------~~a~lGt~liv 117 (125)
T KOG4831|consen 48 TLFLNWEYLIPFLLNQCGSA--LYYLT--LASAPISLAVPVTNSLTFAFTAIFGKALGEETQG------GLALLGTSLIV 117 (125)
T ss_pred HHHHhHHHHHHHHHHHhhHH--HHHHH--HhcCCceeeeeecchhHHHHHHHHHHHhcccccc------ceeehhhhHHh
Confidence 34566765544444333322 34443 5677999999999887666666666554444321 12457888888
Q ss_pred Hhhhe
Q 013305 303 IGISL 307 (445)
Q Consensus 303 ~GV~l 307 (445)
+|+++
T Consensus 118 ~Gi~L 122 (125)
T KOG4831|consen 118 FGIWL 122 (125)
T ss_pred hhhhh
Confidence 88876
No 100
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=33.05 E-value=2e+02 Score=27.27 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=30.7
Q ss_pred cchhHHHHHHHHHHHHHHHHH---HhhhhhHH---HhhhchhhHHHHHHHHHHHhccccccc
Q 013305 55 YHSWRVGILVFLLGNCLNFIS---FGYAAQSL---LAALGSVQFVSNIAFSYFVFNKMVTVK 110 (445)
Q Consensus 55 ~p~W~~G~~l~~~g~il~~~A---l~~ap~sl---V~PLgal~lv~~~l~a~~~l~E~~~~~ 110 (445)
++.||-.++..++..+++++. .++.|..+ +.|...+-+-..++..+++++.|.+.+
T Consensus 143 r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~~~lkkk~~i~ 204 (206)
T PF06570_consen 143 RPSWWKYILISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALRFYLKKKYNIT 204 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345777777676666666543 33344443 223333333335556678888776643
No 101
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=32.90 E-value=4.4e+02 Score=28.14 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=37.3
Q ss_pred HhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecC---C----------CCCCCCHHHHHHHhcchhH
Q 013305 84 LAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGN---H----------QSPVYTPEQLAEKYSNITF 150 (445)
Q Consensus 84 V~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~---~----------~~~~~t~~eL~~~~~~~~f 150 (445)
+.-.|+++...+..++=++.+.....--|++....++=..++...-+ + +.++.+..|+.+.++.+.|
T Consensus 143 ~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~f 222 (412)
T PF01306_consen 143 ARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNF 222 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHH
T ss_pred HHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhH
Confidence 44568888877666666666654455556554322111111111110 0 1123355677889999987
Q ss_pred HHHHHHHH
Q 013305 151 LVYCLILI 158 (445)
Q Consensus 151 l~y~~i~i 158 (445)
..++..+.
T Consensus 223 w~~~l~v~ 230 (412)
T PF01306_consen 223 WFFVLFVI 230 (412)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66554333
No 102
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=31.18 E-value=87 Score=32.00 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhccccccchhhhHHHhhhceeeEE
Q 013305 92 FVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (445)
Q Consensus 92 lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv 126 (445)
-..+++++..+++.+++...|+|++++..|..+..
T Consensus 279 KFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 279 KFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred HHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 36677888888888899999999999988877654
No 103
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=26.96 E-value=1.9e+02 Score=27.94 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhhhcccc-cceehhhHHHHHHHHHHHHHH--hhhcccccCChHHHHHHHHH----HHHHHHhhheec
Q 013305 237 FFSTAGFWMARLNEGLSLFD-AILIVPMFQIAWTSFSICTGF--VYFQEYQVFDALRATMFILG----TASVFIGISLLA 309 (445)
Q Consensus 237 ~v~~~l~Ql~~LN~aL~~~d-a~~VvPv~~v~~t~~si~~G~--i~f~E~~~~~~~~~~~~~~G----~~vi~~GV~lLs 309 (445)
.+++.+..++--|.+...|| ++++.=+.-++-=+..+.-|+ +.-++|...+-.+.+-.+.+ ++++++||.+|+
T Consensus 72 glig~~iKl~kp~e~~~lFdg~SL~Ly~~~i~vYltni~~gi~~~~~~~~~~v~r~~~l~VlAASn~Ii~~~LvGVLvLQ 151 (196)
T PF08229_consen 72 GLIGLLIKLYKPSESNKLFDGASLVLYVFGICVYLTNIVPGIRSVSSGNWGEVDREDGLRVLAASNTIIALVLVGVLVLQ 151 (196)
T ss_pred HHHHHHHHHcCCcHHhhcccchhHHHHHHHHHHHhHhhHhHHHhcCCCCcccccHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444455554566666666 444443332222244555554 22233433332222222222 356789999998
Q ss_pred CC
Q 013305 310 PD 311 (445)
Q Consensus 310 ~~ 311 (445)
..
T Consensus 152 aG 153 (196)
T PF08229_consen 152 AG 153 (196)
T ss_pred hh
Confidence 54
No 104
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=26.08 E-value=69 Score=25.27 Aligned_cols=21 Identities=19% Similarity=0.562 Sum_probs=15.6
Q ss_pred chhHHHHHHHH--HHHHHHHHHH
Q 013305 56 HSWRVGILVFL--LGNCLNFISF 76 (445)
Q Consensus 56 p~W~~G~~l~~--~g~il~~~Al 76 (445)
..||+|+++|+ .|.+++++..
T Consensus 38 gp~~L~l~iFVV~Gs~ifqiir~ 60 (63)
T PF06624_consen 38 GPWLLGLFIFVVCGSAIFQIIRS 60 (63)
T ss_pred CHHHHhhhheeeEcHHHHHHHHH
Confidence 35999999996 4777776643
No 105
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=25.77 E-value=46 Score=33.22 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCC
Q 013305 91 QFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH 131 (445)
Q Consensus 91 ~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~ 131 (445)
--.|+++.+.++++.+++.++|+|++++..+..+=+.+|.+
T Consensus 277 RKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~ 317 (337)
T KOG1580|consen 277 RKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKK 317 (337)
T ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCc
Confidence 35789999999999999999999999999998887777753
No 106
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=25.63 E-value=1.5e+02 Score=28.41 Aligned_cols=56 Identities=7% Similarity=-0.011 Sum_probs=35.3
Q ss_pred HHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhheec
Q 013305 247 RLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLA 309 (445)
Q Consensus 247 ~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs 309 (445)
+...|+++-+.....-+ +...++++.+.+..+++|.. +..+++ |+++.++|+.++.
T Consensus 86 ~~~~a~~~~~~~~a~~l-~~~~Pi~~~lla~~~l~Ek~--~~~~~l----~~~~~~~Gv~li~ 141 (256)
T TIGR00688 86 LFIWAVNNGSSLEVSLG-YLINPLVMVALGRVFLKERI--SRFQFI----AVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHcchHHHHHHH-HHHHHHHHHHHHHHHHhcCC--CHHHHH----HHHHHHHHHHHHH
Confidence 44667776555544333 44688899999999999864 445444 4444455666554
No 107
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.49 E-value=38 Score=35.04 Aligned_cols=125 Identities=15% Similarity=0.132 Sum_probs=75.2
Q ss_pred hhHHHHHHHhhhhhHHHHHHHH-HHHHHHHHhc-cC---ccchhHHHHHHHHHHHHHHHHHHHHHhhhhcccccceehhh
Q 013305 189 LPFSYAIVSGAVGSFSVLFAKS-LSNLLRLAMS-NG---YQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPM 263 (445)
Q Consensus 189 ~~l~y~~~sGllgg~svl~aK~-~~~ll~~ti~-g~---~qf~~w~tY~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv 263 (445)
.++..+..+.++-|.+...-|- .-.+-....+ |+ .-+.+|.-|.=++.+.+.=+. +| .|+.-.++++|.|+
T Consensus 21 ~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~--NF--aAYaFAPasLVtPL 96 (335)
T KOG2922|consen 21 IGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIA--NF--AAYAFAPASLVTPL 96 (335)
T ss_pred eeeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHHHHHhHh--hH--HHHhhchHhhhccc
Confidence 3456666677775555555444 3332221111 21 235666666655554433221 12 35666789999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhheecCCCCCCCCCCCCccc
Q 013305 264 FQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKGGEVKDDSSL 324 (445)
Q Consensus 264 ~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~~~~~~~~~~~~ 324 (445)
-....+..++++. .+++|-.+ ..=.+||+++++|.+++-.+.++..++..-.+.
T Consensus 97 GAlsvi~saila~-~~L~Ekl~------~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el 150 (335)
T KOG2922|consen 97 GALSVIISAILAS-FFLKEKLN------LLGILGCVLCVVGSTTIVIHAPKEQEIESVEEV 150 (335)
T ss_pred hhHHHHHHHHHHH-HHHHHHHH------HhhhhheeEEecccEEEEEecCcccccccHHHH
Confidence 8888777776665 45566533 334588999999999999888887665543333
No 108
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=24.55 E-value=96 Score=20.67 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=15.9
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 013305 3 EWVIGAFINLVGSIAINFG 21 (445)
Q Consensus 3 ~~~IGi~Lal~ss~l~a~G 21 (445)
.|++|+.+|..-+++++..
T Consensus 5 aWilG~~lA~~~~i~~a~w 23 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAMW 23 (28)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4899999999888887765
No 109
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=24.46 E-value=1.5e+02 Score=23.16 Aligned_cols=20 Identities=25% Similarity=0.725 Sum_probs=14.6
Q ss_pred hhHHHHHHHHH--HHHHHHHHH
Q 013305 57 SWRVGILVFLL--GNCLNFISF 76 (445)
Q Consensus 57 ~W~~G~~l~~~--g~il~~~Al 76 (445)
.|++|++.+++ +.+.+++-+
T Consensus 39 PwLlglFvFVVcGSa~FqIIr~ 60 (65)
T KOG3491|consen 39 PWLLGLFVFVVCGSALFQIIRT 60 (65)
T ss_pred hHHHHHHHHHhhcHHHHHHHHH
Confidence 49999999964 566666544
No 110
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.32 E-value=3.5e+02 Score=22.29 Aligned_cols=20 Identities=10% Similarity=0.130 Sum_probs=13.9
Q ss_pred cccchhHHHHHHHHHHHHHH
Q 013305 53 VHYHSWRVGILVFLLGNCLN 72 (445)
Q Consensus 53 l~~p~W~~G~~l~~~g~il~ 72 (445)
+++|.||++++..++-.+.+
T Consensus 8 ~kN~~~w~ali~~i~l~vq~ 27 (84)
T PF04531_consen 8 FKNKAFWVALISAILLLVQQ 27 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHH
Confidence 47889999888665544444
No 111
>COG3785 Uncharacterized conserved protein [Function unknown]
Probab=23.03 E-value=30 Score=30.08 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=32.1
Q ss_pred cccccCcccccccceeeeccccccccCCCcCccCcceeeeccCCCCCCCCccccc
Q 013305 375 MSLGLGEDSINASAVLVMPMVSSKINGFRGNRFDRAKLFNVKNSGSDWSGISIDE 429 (445)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (445)
+-||||| .|--++-||||+-+|=---++. ++.-|+.|+-|.
T Consensus 13 aKF~IGQ------------vVRHrlfpfrGVV~DvDPeyan--teew~~~ip~~~ 53 (116)
T COG3785 13 AKFGIGQ------------VVRHRLFPFRGVVFDVDPEYAN--TEEWPDEIPVNI 53 (116)
T ss_pred hhcchhh------------hhhhhhcccceEEEecCccccc--CccChhhccccc
Confidence 4589999 3778899999999998777764 444599888765
No 112
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=22.99 E-value=1e+02 Score=20.88 Aligned_cols=20 Identities=10% Similarity=0.346 Sum_probs=16.2
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 013305 3 EWVIGAFINLVGSIAINFGT 22 (445)
Q Consensus 3 ~~~IGi~Lal~ss~l~a~G~ 22 (445)
.|++|+.+|+.-++++++-.
T Consensus 5 aWilG~~lA~~~~v~~a~w~ 24 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAMWL 24 (30)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 48999999988888877654
No 113
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=22.04 E-value=4.9e+02 Score=27.34 Aligned_cols=37 Identities=19% Similarity=0.081 Sum_probs=30.7
Q ss_pred HHhhhhcccccceehhhHHHHHHHHHHHHHHhhhccc
Q 013305 247 RLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEY 283 (445)
Q Consensus 247 ~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~ 283 (445)
++.+=++.-|+.-+.|+--+.=....+..|+.--+|.
T Consensus 294 ~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~ 330 (399)
T PF00909_consen 294 WLLKRLKIDDPVGAFAVHGVGGIWGTILTGLFASPEV 330 (399)
T ss_dssp HHHHHHTS-HTTGHHHHCHHHHHHHHHHHHHHCCCHH
T ss_pred cccceeEeccccceEeeeeccHHHHHHHHHHHhcccc
Confidence 5888999999999999999888888888887777663
No 114
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=20.91 E-value=2.1e+02 Score=27.97 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhhhh-H--------HHhhhchhhHHHHHHHHHHHhccccccchhhhHHHh
Q 013305 67 LGNCLNFISFGYAAQ-S--------LLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFI 118 (445)
Q Consensus 67 ~g~il~~~Al~~ap~-s--------lV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~li 118 (445)
-|.-.++.|+.+-++ . +.-=+.=.+..++++++.+-++||++++..+-.++.
T Consensus 102 wgig~sf~AlltPDl~~~~~p~l~~~lffitH~svfls~v~~~vhfreRpgksgl~~svl~ 162 (236)
T COG5522 102 WGIGISFMALLTPDLQYLQVPWLEFLLFFITHISVFLSAVILIVHFRERPGKSGLVMSVLV 162 (236)
T ss_pred hhhhHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHH
Confidence 344445566655554 1 222223345677888888999999999987755443
Done!