Query 013305
Match_columns 445
No_of_seqs 185 out of 816
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 08:05:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.8 2.5E-08 8.7E-13 84.9 9.1 99 9-128 5-104 (110)
2 2i68_A Protein EMRE; transmemb 98.6 2.1E-08 7.2E-13 88.9 5.3 100 9-129 5-105 (137)
3 2i68_A Protein EMRE; transmemb 97.2 0.00049 1.7E-08 60.7 6.7 65 242-312 41-105 (137)
4 3b5d_A Multidrug transporter E 96.7 0.015 5E-07 49.0 10.7 64 243-312 42-105 (110)
5 3o7q_A L-fucose-proton symport 15.1 4.1E+02 0.014 25.0 7.9 35 48-82 250-284 (438)
6 3hki_C Proteinase-activated re 10.6 1E+02 0.0036 18.3 1.2 16 413-430 2-17 (21)
7 3hd6_A Ammonium transporter RH 9.9 1.4E+03 0.047 23.6 12.4 31 248-278 333-363 (490)
8 1lqb_D HIF-1 alpha, hypoxia-in 8.8 85 0.0029 20.7 0.3 7 425-431 18-24 (34)
9 4did_B Inositol phosphate phos 8.7 1.1E+02 0.0037 26.7 1.1 18 408-425 16-33 (152)
10 2pjx_C Syntaxin-4; membrane tr 7.4 1.3E+02 0.0044 18.7 0.7 22 409-434 2-23 (29)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.76 E-value=2.5e-08 Score=84.91 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhhhhHHHhhh-
Q 013305 9 FINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAAL- 87 (445)
Q Consensus 9 ~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~~G~~l~~~g~il~~~Al~~ap~slV~PL- 87 (445)
++.+++.++-+.|+.+.|++.. . . +.+.++.+.+.+++++.+...++...|++.+.|+
T Consensus 5 l~l~~a~~~e~~~~~~lK~s~~---------------~--~----~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~ 63 (110)
T 3b5d_A 5 IYLGGAILAEVIGTTLMKFSEG---------------F--T----RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIW 63 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhccC---------------c--c----hHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHH
Confidence 4566788899999999999731 1 0 1234678888899999999999999999999999
Q ss_pred chhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEee
Q 013305 88 GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSF 128 (445)
Q Consensus 88 gal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~ 128 (445)
.+++.++..+++.+++||+++..+++|+++++.|++++...
T Consensus 64 ~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred hhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999877553
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.64 E-value=2.1e-08 Score=88.91 Aligned_cols=100 Identities=15% Similarity=0.153 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhhhhHHHhhh-
Q 013305 9 FINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAAL- 87 (445)
Q Consensus 9 ~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~~G~~l~~~g~il~~~Al~~ap~slV~PL- 87 (445)
++.+++.++-+.|+.+.|++.. .. +.+.++.|+++++++++++..++...|++.+.|+
T Consensus 5 l~Ll~ail~ev~~~~~lK~s~g---------------~~------~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw 63 (137)
T 2i68_A 5 IYLGGAILAEVIGTTLMKFSEG---------------FT------RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIW 63 (137)
T ss_dssp HHHHHHHHHHHHHHHHC---------------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---------------cc------hHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHH
Confidence 3456788889999999999731 00 1234678999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeec
Q 013305 88 GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFG 129 (445)
Q Consensus 88 gal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g 129 (445)
.+++.++..+++.+++||+++..+++|++++++|++++....
T Consensus 64 ~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 899999999999999999999999999999999998776543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.24 E-value=0.00049 Score=60.74 Aligned_cols=65 Identities=9% Similarity=0.054 Sum_probs=44.6
Q ss_pred HHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhheecCCC
Q 013305 242 GFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDE 312 (445)
Q Consensus 242 l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~ 312 (445)
..-.+++++++++.|.+.++|+....-++++++.|.++|+|.... . -.+|++++++||++++..+
T Consensus 41 ~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~--~----~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL--P----AIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCH--H----HHHHHHHHHHHHHHHhcCC
Confidence 334556799999999999999988889999999999999997543 3 3578888999999987643
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=96.66 E-value=0.015 Score=49.03 Aligned_cols=64 Identities=11% Similarity=0.096 Sum_probs=53.6
Q ss_pred HHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhheecCCC
Q 013305 243 FWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDE 312 (445)
Q Consensus 243 ~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~ 312 (445)
.-..++++++++.|.+.++|+....-++.+.+.|.++|+|.. +..+ .+|..+++.||++++..+
T Consensus 42 ~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~--s~~~----~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 42 ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL--DLPA----IIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCC--CHHH----HHHHHHHHHHHHHHhcCC
Confidence 334567899999999999999888999999999999999975 3443 578889999999998754
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=15.05 E-value=4.1e+02 Score=25.00 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=21.1
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHhhhhhH
Q 013305 48 SLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQS 82 (445)
Q Consensus 48 ~~~~ll~~p~W~~G~~l~~~g~il~~~Al~~ap~s 82 (445)
..+..+++|.+|..++.+.+....+.....+.|..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (438)
T 3o7q_A 250 SLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRY 284 (438)
T ss_dssp HHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888877776655544444444555555
No 6
>3hki_C Proteinase-activated receptor 1; serine protease, acute phase, blood coagulation, cleavage on basic residues, disulfide bond; HET: NAG; 2.20A {Homo sapiens} PDB: 3hkj_C*
Probab=10.63 E-value=1e+02 Score=18.32 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=11.5
Q ss_pred eeccCCCCCCCCcccccc
Q 013305 413 FNVKNSGSDWSGISIDED 430 (445)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~ 430 (445)
|-+||+.++.. +++||
T Consensus 2 F~lrn~~~~fE--p~~~d 17 (21)
T 3hki_C 2 FLLRNPNDKYE--PFWED 17 (26)
T ss_pred eeeccCccccc--ccccc
Confidence 45899998888 44555
No 7
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=9.90 E-value=1.4e+03 Score=23.64 Aligned_cols=31 Identities=19% Similarity=0.079 Sum_probs=23.5
Q ss_pred HhhhhcccccceehhhHHHHHHHHHHHHHHh
Q 013305 248 LNEGLSLFDAILIVPMFQIAWTSFSICTGFV 278 (445)
Q Consensus 248 LN~aL~~~da~~VvPv~~v~~t~~si~~G~i 278 (445)
+++-++.-|+.-+.|+--+.=...+++.|+.
T Consensus 333 l~~kl~iDD~lgv~~vHGv~Gi~G~l~~glf 363 (490)
T 3hd6_A 333 LESRLHIQDTCGINNLHGIPGIIGGIVGAVT 363 (490)
T ss_dssp HHHHHCCCCTTCHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHCCCCccccchHHhhHHHHHHHHHHHHH
Confidence 5667888999999999877766666666653
No 8
>1lqb_D HIF-1 alpha, hypoxia-inducible factor 1 alpha; protein-peptide complex, tumor suppressor, cancer, proteosomal degradation, ubiquitin; 2.00A {Homo sapiens}
Probab=8.83 E-value=85 Score=20.68 Aligned_cols=7 Identities=43% Similarity=0.657 Sum_probs=5.5
Q ss_pred ccccccc
Q 013305 425 ISIDEDG 431 (445)
Q Consensus 425 ~~~~~~~ 431 (445)
||||||=
T Consensus 18 IpMddDF 24 (34)
T 1lqb_D 18 IPMDDDF 24 (34)
T ss_pred cccCccc
Confidence 8899774
No 9
>4did_B Inositol phosphate phosphatase SOPB; small GTPase, GTP binding, hydrolase-hydrolase complex; HET: GDP; 2.35A {Salmonella enterica subsp}
Probab=8.72 E-value=1.1e+02 Score=26.75 Aligned_cols=18 Identities=17% Similarity=0.654 Sum_probs=16.0
Q ss_pred CcceeeeccCCCCCCCCc
Q 013305 408 DRAKLFNVKNSGSDWSGI 425 (445)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~ 425 (445)
.|.+++++|.+|..|++.
T Consensus 16 a~~~i~~l~~~~~~~~~~ 33 (152)
T 4did_B 16 ARPEIIVLREPGATWGNY 33 (152)
T ss_dssp CCCCEEEECCSSCCGGGG
T ss_pred ccceeeEecCCcchhhhh
Confidence 588999999999999873
No 10
>2pjx_C Syntaxin-4; membrane trafficking, SM protein, snare proteins, endocytosis/exocytosis complex; 3.15A {Mus musculus}
Probab=7.40 E-value=1.3e+02 Score=18.73 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=15.0
Q ss_pred cceeeeccCCCCCCCCcccccccccc
Q 013305 409 RAKLFNVKNSGSDWSGISIDEDGAKL 434 (445)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (445)
|.|--.+|. | +|||-|||-.++
T Consensus 2 rdrthelrq-g---dnisddedevrv 23 (29)
T 2pjx_C 2 RDRTHELRQ-G---DNISDDEDEVRV 23 (29)
T ss_pred ccchhhhhc-C---CCCCCccceeEE
Confidence 344455665 3 699999998765
Done!