Query 013305
Match_columns 445
No_of_seqs 185 out of 816
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 08:05:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013305.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013305hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7ga_ f.44.1.1 (A:) Ammonium 24.5 2.5E+02 0.018 25.7 11.5 34 245-278 297-330 (383)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 6.2 2.6E+02 0.019 17.1 3.3 20 230-249 18-37 (37)
3 d1r3jc_ f.14.1.1 (C:) Potassiu 5.1 2.6E+02 0.019 20.1 3.6 27 278-307 55-81 (103)
4 d1ppje2 f.23.12.1 (E:1-69) Iro 4.7 4.7E+02 0.034 18.0 4.5 31 189-220 33-63 (69)
5 d2p7tc1 f.14.1.1 (C:86-119) Po 4.2 3.2E+02 0.023 16.1 2.6 25 80-104 8-32 (34)
6 d1nekd_ f.21.2.2 (D:) Succinat 4.0 3.5E+02 0.026 19.8 3.6 49 113-163 20-68 (113)
7 d1biaa2 b.34.1.1 (A:271-317) B 3.8 1.1E+02 0.0083 19.5 0.4 16 425-440 20-35 (47)
8 d2axtj1 f.23.32.1 (J:7-40) Pho 3.6 2E+02 0.015 17.3 1.3 10 55-64 2-11 (34)
9 d1otsa_ f.20.1.1 (A:) Clc chlo 3.3 1.2E+03 0.088 20.4 7.8 29 189-217 18-46 (444)
10 d1m56d_ f.23.8.1 (D:) Bacteria 3.2 3E+02 0.022 17.4 2.0 14 225-238 19-32 (42)
No 1
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=24.48 E-value=2.5e+02 Score=25.65 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=26.6
Q ss_pred HHHHhhhhcccccceehhhHHHHHHHHHHHHHHh
Q 013305 245 MARLNEGLSLFDAILIVPMFQIAWTSFSICTGFV 278 (445)
Q Consensus 245 l~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i 278 (445)
..++.+-++.-|+.-++|+--+.=...+++.|+.
T Consensus 297 ~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glf 330 (383)
T d1u7ga_ 297 VTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIF 330 (383)
T ss_dssp HHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccceEeehhhhHHHHHHHHHHh
Confidence 3456667889999999999888877777777764
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.18 E-value=2.6e+02 Score=17.07 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013305 230 TYSMLLLFFSTAGFWMARLN 249 (445)
Q Consensus 230 tY~llv~~v~~~l~Ql~~LN 249 (445)
.|-++++++...++-.||.|
T Consensus 18 y~GlLlifvl~vLFssYfFN 37 (37)
T d2axtl1 18 YLGLLLILVLALLFSSYFFN 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 34556666666777777765
No 3
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.11 E-value=2.6e+02 Score=20.12 Aligned_cols=27 Identities=11% Similarity=0.100 Sum_probs=12.8
Q ss_pred hhhcccccCChHHHHHHHHHHHHHHHhhhe
Q 013305 278 VYFQEYQVFDALRATMFILGTASVFIGISL 307 (445)
Q Consensus 278 i~f~E~~~~~~~~~~~~~~G~~vi~~GV~l 307 (445)
+=|+|..+.++.. -+++++.++.|+.+
T Consensus 55 vGYGDi~P~t~~g---r~~~~~~~~~Gi~~ 81 (103)
T d1r3jc_ 55 VGYGDLYPVTLWG---RCVAVVVMVAGITS 81 (103)
T ss_dssp CCCSSSCCCSHHH---HHHHHHHHHHHHHH
T ss_pred cccCccccCChhH---HHHHHHHHHHHHHH
Confidence 4467776555433 22333444444443
No 4
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.70 E-value=4.7e+02 Score=18.05 Aligned_cols=31 Identities=26% Similarity=0.256 Sum_probs=23.9
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 013305 189 LPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMS 220 (445)
Q Consensus 189 ~~l~y~~~sGllgg~svl~aK~~~~ll~~ti~ 220 (445)
+++.| ++.|..+-.++-.+|.++.-+..+++
T Consensus 33 k~fsY-l~~g~~~v~~ay~AK~~V~~fvssmS 63 (69)
T d1ppje2 33 KGFSY-LVTATTTVGVAYAAKNVVSQFVSSMS 63 (69)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred ceehh-hhhhhHHHHHHHHHHHHHHHHHHhcC
Confidence 56888 67777788888889999887766553
No 5
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=4.19 E-value=3.2e+02 Score=16.06 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=15.4
Q ss_pred hhHHHhhhchhhHHHHHHHHHHHhc
Q 013305 80 AQSLLAALGSVQFVSNIAFSYFVFN 104 (445)
Q Consensus 80 p~slV~PLgal~lv~~~l~a~~~l~ 104 (445)
-..+|+.+.+.+++++.+...|.-+
T Consensus 8 vvvmvagits~glv~aa~atwfvgr 32 (34)
T d2p7tc1 8 VVVMVAGITSFGLVTAALATWFVGR 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeccchhhhHHHHHHHHhhcc
Confidence 3445666677777777765554433
No 6
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=3.96 E-value=3.5e+02 Score=19.84 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=28.3
Q ss_pred hhHHHhhhceeeEEeecCCCCCCCCHHHHHHHhcchhHHHHHHHHHHHHHH
Q 013305 113 VATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAI 163 (445)
Q Consensus 113 ~G~~lii~G~~liv~~g~~~~~~~t~~eL~~~~~~~~fl~y~~i~iviv~l 163 (445)
-|++++.....++..+.. ....+.|+..+.+.+|..-....+.++....
T Consensus 20 SAv~l~~l~~~~~~~~~~--~~~~~y~~~~~~~~~~~~~il~~l~l~~~~~ 68 (113)
T d1nekd_ 20 TAIVLTLYIIYMVGFFAT--SGELTYEVWIGFFASAFTKVFTLLALFSILI 68 (113)
T ss_dssp HHHHHHHHHHHHHHHHTT--TSSCCHHHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 344444444333333322 3356889999999999876666555544443
No 7
>d1biaa2 b.34.1.1 (A:271-317) Biotin repressor/biotin holoenzyme synthetase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.85 E-value=1.1e+02 Score=19.46 Aligned_cols=16 Identities=44% Similarity=0.497 Sum_probs=12.9
Q ss_pred ccccccccccccccCC
Q 013305 425 ISIDEDGAKLLETSAG 440 (445)
Q Consensus 425 ~~~~~~~~~~~~~~~~ 440 (445)
..+||||+-+++|+..
T Consensus 20 ~gId~~G~Lll~t~~g 35 (47)
T d1biaa2 20 RGIDKQGALLLEQDGI 35 (47)
T ss_dssp EEECTTSCEEEEETTE
T ss_pred eeECCCCcEEEEECCC
Confidence 3579999999998754
No 8
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.56 E-value=2e+02 Score=17.35 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=7.0
Q ss_pred cchhHHHHHH
Q 013305 55 YHSWRVGILV 64 (445)
Q Consensus 55 ~p~W~~G~~l 64 (445)
-|+|++|.+.
T Consensus 2 iPLWlv~tv~ 11 (34)
T d2axtj1 2 IPLWIVATVA 11 (34)
T ss_dssp CCHHHHHHHH
T ss_pred CcEEEeeehh
Confidence 4788887664
No 9
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=3.33 E-value=1.2e+03 Score=20.44 Aligned_cols=29 Identities=14% Similarity=0.030 Sum_probs=19.0
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 013305 189 LPFSYAIVSGAVGSFSVLFAKSLSNLLRL 217 (445)
Q Consensus 189 ~~l~y~~~sGllgg~svl~aK~~~~ll~~ 217 (445)
.-+.++.+-|++.|..+.+-+...+.+..
T Consensus 18 ~~~~la~liGi~~gl~~~~~~~~i~~~~~ 46 (444)
T d1otsa_ 18 AILFMAAVVGTLVGLAAVAFDKGVAWLQN 46 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777776666665543
No 10
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.23 E-value=3e+02 Score=17.42 Aligned_cols=14 Identities=7% Similarity=0.242 Sum_probs=7.1
Q ss_pred chhHHHHHHHHHHH
Q 013305 225 LHSWFTYSMLLLFF 238 (445)
Q Consensus 225 f~~w~tY~llv~~v 238 (445)
|..|.+|..+++.+
T Consensus 19 Fik~~t~~~i~~i~ 32 (42)
T d1m56d_ 19 FVRMVTWAAVVIVA 32 (42)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555444433
Done!