BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013306
(445 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
Length = 437
Score = 508 bits (1308), Expect = e-144, Method: Compositional matrix adjust.
Identities = 240/428 (56%), Positives = 309/428 (72%), Gaps = 27/428 (6%)
Query: 35 SADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDP 94
++ +L L ++IP++Q R+K + + G +G ITVDM+ GGMRGM GL++ETS+LDP
Sbjct: 1 ASSTNLKDILADLIPKEQARIKTFRQQHGNTAVGQITVDMMYGGMRGMKGLVYETSVLDP 60
Query: 95 DEGIRFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATV 154
DEGIRFRG SIPECQK+LP AK TG++P++EQV LSKE RA +
Sbjct: 61 DEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAAL 120
Query: 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSK-------------- 200
P +V +D P HPM+Q ++ + AL +S F AY +GIH++K
Sbjct: 121 PSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIA 180
Query: 201 ------------IYKDGKIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEG 247
+Y++G I DS LD+ NF++MLG+ D + ELMRLY+TIHSDHEG
Sbjct: 181 KLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEG 240
Query: 248 GNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQ 307
GNVSAHT HLV SALSDPYLSFAAA+NGLAGPLHGLANQEVL+W+ + E G++V+ E+
Sbjct: 241 GNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEK 300
Query: 308 LKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPI 367
L+DY+W TLNSG+VVPG+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +
Sbjct: 301 LRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKIVPNV 360
Query: 368 LTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLE 427
L + GK KNPWPNVDAHSGVLL ++G+ E YYTVLFGVSR+LG+ +QLIW RALG PLE
Sbjct: 361 LLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLE 420
Query: 428 RPKSVTLD 435
RPKS++ D
Sbjct: 421 RPKSMSTD 428
>pdb|4CTS|A Chain A, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|4CTS|B Chain B, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|1CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
pdb|3ENJ|A Chain A, Structure Of Pig Heart Citrate Synthase At 1.78 A
Resolution
Length = 437
Score = 507 bits (1305), Expect = e-144, Method: Compositional matrix adjust.
Identities = 240/428 (56%), Positives = 309/428 (72%), Gaps = 27/428 (6%)
Query: 35 SADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDP 94
++ +L L ++IP++Q R+K + + G +G ITVDM+ GGMRGM GL++ETS+LDP
Sbjct: 1 ASSTNLKDILADLIPKEQARIKTFRQQHGNTVVGQITVDMMYGGMRGMKGLVYETSVLDP 60
Query: 95 DEGIRFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATV 154
DEGIRFRG SIPECQK+LP AK TG++P++EQV LSKE RA +
Sbjct: 61 DEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAAL 120
Query: 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSK-------------- 200
P +V +D P HPM+Q ++ + AL +S F AY +GIH++K
Sbjct: 121 PSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIA 180
Query: 201 ------------IYKDGKIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEG 247
+Y++G I DS LD+ NF++MLG+ D + ELMRLY+TIHSDHEG
Sbjct: 181 KLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEG 240
Query: 248 GNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQ 307
GNVSAHT HLV SALSDPYLSFAAA+NGLAGPLHGLANQEVL+W+ + E G++V+ E+
Sbjct: 241 GNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEK 300
Query: 308 LKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPI 367
L+DY+W TLNSG+VVPG+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +
Sbjct: 301 LRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKIVPNV 360
Query: 368 LTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLE 427
L + GK KNPWPNVDAHSGVLL ++G+ E YYTVLFGVSR+LG+ +QLIW RALG PLE
Sbjct: 361 LLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLE 420
Query: 428 RPKSVTLD 435
RPKS++ D
Sbjct: 421 RPKSMSTD 428
>pdb|6CSC|A Chain A, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
pdb|6CSC|B Chain B, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
pdb|1AL6|A Chain A, Chicken Citrate Synthase Complex With N-Hydroxyamido-Coa
And Oxaloacetate
Length = 437
Score = 502 bits (1292), Expect = e-142, Method: Compositional matrix adjust.
Identities = 239/432 (55%), Positives = 305/432 (70%), Gaps = 27/432 (6%)
Query: 35 SADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDP 94
++ +L L +IP++Q R+K + + G +G ITVDM GGMRGM GL++ETS+LDP
Sbjct: 1 ASSTNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDP 60
Query: 95 DEGIRFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATV 154
DEGIRFRG SIPECQKLLP A TG++P+ EQV +SKE RA +
Sbjct: 61 DEGIRFRGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAAL 120
Query: 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSK-------------- 200
P +V +D P HPM+Q ++ + AL +S F AY +GI+++K
Sbjct: 121 PSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIA 180
Query: 201 ------------IYKDGKIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEG 247
+Y+ G I DS LD+ NF++MLG+ DP+ ELMRLY+TIHSDHEG
Sbjct: 181 KLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEG 240
Query: 248 GNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQ 307
GNVSAHT HLV SALSDPYLSFAAA+NGLAGPLHGLANQEVLLW+ + + G + + E+
Sbjct: 241 GNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEK 300
Query: 308 LKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPI 367
L+DY+W TLNSG+VVPG+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +
Sbjct: 301 LRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNV 360
Query: 368 LTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLE 427
L + GK KNPWPNVDAHSGVLL ++G+ E YYTVLFGVSR+LG+ +QLIW RALG PLE
Sbjct: 361 LLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLE 420
Query: 428 RPKSVTLDWIEK 439
RPKS++ +EK
Sbjct: 421 RPKSMSTAGLEK 432
>pdb|1AMZ|A Chain A, Chicken Citrate Synthase Complex With Nitromethylde-coa
And Malate
pdb|1CSH|A Chain A, A Very Short Hydrogen Bond Provides Only Moderate
Stabilization Of An Enzyme: Inhibitor Complex Of Citrate
Synthase
pdb|1CSI|A Chain A, A Very Short Hydrogen Bond Provides Only Moderate
Stabilization Of An Enzyme: Inhibitor Complex Of Citrate
Synthase
pdb|1CSR|A Chain A, Alpha-Fluoro Acid And Alpha-Fluoro Amide Analogs Of
Acetyl- Coa As Inhibitors Of Of Citrate Synthase: Effect
Of Pka Matching On Binding Affinity And Hydrogen Bond
Length
pdb|1CSS|A Chain A, Alpha-Fluoro Acid And Alpha-Fluoro Amide Analogs Of
Acetyl-Coa As Inhibitors Of Of Citrate Synthase: Effect
Of Pka Matching On Binding Affinity And Hydrogen Bond
Length
Length = 435
Score = 501 bits (1289), Expect = e-142, Method: Compositional matrix adjust.
Identities = 239/428 (55%), Positives = 303/428 (70%), Gaps = 27/428 (6%)
Query: 39 DLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI 98
+L L +IP++Q R+K + + G +G ITVDM GGMRGM GL++ETS+LDPDEGI
Sbjct: 3 NLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGI 62
Query: 99 RFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATVPDYV 158
RFRG SIPECQKLLP A TG++P+ EQV +SKE RA +P +V
Sbjct: 63 RFRGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHV 122
Query: 159 YKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSK------------------ 200
+D P HPM+Q ++ + AL +S F AY +GI+++K
Sbjct: 123 VTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKLPC 182
Query: 201 --------IYKDGKIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS 251
+Y+ G I DS LD+ NF++MLG+ DP+ ELMRLY+TIHSDHEGGNVS
Sbjct: 183 VAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNVS 242
Query: 252 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDY 311
AHT HLV SALSDPYLSFAAA+NGLAGPLHGLANQEVLLW+ + + G + + E+L+DY
Sbjct: 243 AHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDY 302
Query: 312 VWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKL 371
+W TLNSG+VVPG+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +L +
Sbjct: 303 IWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQ 362
Query: 372 GKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKS 431
GK KNPWPNVDAHSGVLL ++G+ E YYTVLFGVSR+LG+ +QLIW RALG PLERPKS
Sbjct: 363 GKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKS 422
Query: 432 VTLDWIEK 439
++ +EK
Sbjct: 423 MSTAGLEK 430
>pdb|1CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With D-
And L-Malate: Mechanistic Implications
pdb|2CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|3CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|4CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|5CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
Citrate Synthase. 1.9-Angstroms Structure Of The Ternary
Complex With Oxaloacetate And Carboxymethyl Coenzyme A
pdb|6CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
Citrate Synthase. 1.9-Angstroms Structure Of The Ternary
Complex With Oxaloacetate And Carboxymethyl Coenzyme A
pdb|5CSC|A Chain A, Structure Of An Open Form Of Chicken Heart Citrate
Synthase At 2.8 Angstroms Resolution
Length = 433
Score = 479 bits (1232), Expect = e-135, Method: Compositional matrix adjust.
Identities = 232/428 (54%), Positives = 290/428 (67%), Gaps = 27/428 (6%)
Query: 35 SADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDP 94
++ +L L +IP++Q R+K + + G LG ITVDM GGMRGM GL++ETS+LDP
Sbjct: 1 ASSTNLKDVLAALIPKEQARIKTFRQQHGGTALGQITVDMSYGGMRGMKGLVYETSVLDP 60
Query: 95 DEGIRFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATV 154
DEGIRFRG SIPECQKLLP TG++P+ QV LSKE RA +
Sbjct: 61 DEGIRFRGFSIPECQKLLPKGGXGGEPLPEGLFWLLVTGQIPTGAQVSWLSKEWAKRAAL 120
Query: 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSK-------------- 200
P +V +D P HPM+Q ++ + AL +S F AY +GI ++K
Sbjct: 121 PSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGILRTKYWEMVYESAMDLIA 180
Query: 201 ------------IYKDGKIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEG 247
+Y+ G I DS LD+ NF++MLG+ D + ELMRLY+TIHSDHEG
Sbjct: 181 KLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEG 240
Query: 248 GNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQ 307
GNVSAHT HLV SALSDPYLSFAAA+NGLAGPLHGLANQEVL W+ +
Sbjct: 241 GNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLGWLAQLQKAXXXAGADAS 300
Query: 308 LKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPI 367
L+DY+W TLNSG+VVPG+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +
Sbjct: 301 LRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPGDPMFKLVAQLYKIVPNV 360
Query: 368 LTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLE 427
L + G NPWPNVDAHSGVLL ++G+ E YYTVLFGVSR+LG+ +QLIW RALG PLE
Sbjct: 361 LLEQGAAANPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLE 420
Query: 428 RPKSVTLD 435
RPKS++ D
Sbjct: 421 RPKSMSTD 428
>pdb|5CSC|B Chain B, Structure Of An Open Form Of Chicken Heart Citrate
Synthase At 2.8 Angstroms Resolution
Length = 429
Score = 478 bits (1231), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/428 (54%), Positives = 293/428 (68%), Gaps = 31/428 (7%)
Query: 35 SADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDP 94
++ +L L +IP++Q R+K + + G LG ITVDM GGMRGM GL++ETS+LDP
Sbjct: 1 ASSTNLKDVLAALIPKEQARIKTFRQQHGGTALGQITVDMSYGGMRGMKGLVYETSVLDP 60
Query: 95 DEGIRFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATV 154
DEGIRFRG SIPECQKLLP TG++P+ QV LSKE RA +
Sbjct: 61 DEGIRFRGFSIPECQKLLPKGG-GGEPLPEGLFWLLVTGQIPTGAQVSWLSKEWAKRAAL 119
Query: 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSK-------------- 200
P +V +D P HPM+Q ++ + AL +S F AY +GI ++K
Sbjct: 120 PSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGILRTKYWEMVYESAMDLIA 179
Query: 201 ------------IYKDGKIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEG 247
+Y+ G I DS LD+ NF++MLG+ D + ELMRLY+TIHSDHEG
Sbjct: 180 KLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEG 239
Query: 248 GNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQ 307
GNVSAHT HLV SALSDPYLSFAAA+NGLAGPLHGLANQEVL W+ + G + +
Sbjct: 240 GNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLGWLAQLQKAAGADAS--- 296
Query: 308 LKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPI 367
L+DY+W TLNSG+VVPG+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +
Sbjct: 297 LRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPGDPMFKLVAQLYKIVPNV 356
Query: 368 LTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLE 427
L + G NPWPNVDAHSGVLL ++G+ E YYTVLFGVSR+LG+ +QLIW RALG PLE
Sbjct: 357 LLEQGAAANPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLE 416
Query: 428 RPKSVTLD 435
RPKS++ D
Sbjct: 417 RPKSMSTD 424
>pdb|3MSU|A Chain A, Crystal Structure Of Citrate Synthase From Francisella
Tular
pdb|3MSU|B Chain B, Crystal Structure Of Citrate Synthase From Francisella
Tular
Length = 427
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/340 (29%), Positives = 155/340 (45%), Gaps = 46/340 (13%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQV------QS 186
G++P+ EQV +E+ ++ V ++V AI A+P HPM+ +GV L Q
Sbjct: 101 GELPTDEQVKSFRQEIINKMPVCEHVKAAIAAMPQHTHPMSSLIAGVNVLAAEHIHNGQK 160
Query: 187 EFQEAYEKGIHKSKI-------YKDG---KIIPKDDSLDYGGNFSHMLGFDD----PKML 232
E Q+ K I +KI Y+ K + Y NF +M+ DD P L
Sbjct: 161 ESQDEVAKNI-VAKIATIAAMAYRHNHGKKFLEPKMEYGYAENFLYMMFADDESYKPDEL 219
Query: 233 EL--MRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLL 290
+ M +H+DHE N S T L S + PY + A + L GP HG AN+ VL
Sbjct: 220 HIKAMDTIFMLHADHE-QNASTSTVRLSGSTGNSPYAAIIAGITALWGPAHGGANEAVL- 277
Query: 291 WIKSVVDECGENVTTEQLKDYVWKTLNSGK--VVPGFGHGVLRKTDPRYT-----CQREF 343
++ E G +TE + Y+ K + + GFGH V + TDPR T C+
Sbjct: 278 ---KMLSEIG---STENIDKYIAKAKDKDDPFRLMGFGHRVYKNTDPRATAMKKNCEEIL 331
Query: 344 ALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVL 403
A D+PL + KL E+ + + + + NVD +SG++L G+ E +T +
Sbjct: 332 AKLGHSDNPLLTVAKKLEEIA--LQDEFFIERKLFSNVDFYSGIILKAMGIPE-DMFTAI 388
Query: 404 FGVSRSLGICSQLIWDRALGLPLE---RPKSVTLDWIEKN 440
F ++R+ G SQ W + P + RP+ + +N
Sbjct: 389 FALARTSGWISQ--WIEMVNDPAQKIGRPRQLYTGATNRN 426
>pdb|1VGP|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
Length = 373
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 149/306 (48%), Gaps = 35/306 (11%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
GK+P++E+++ ++LR+ +PD++ K + + A PM + V L ++ +
Sbjct: 53 GKLPNREELNWFQEKLREERYLPDFIIKFLREVRKDAQPMDILRTAVSLLGIEDSKNDER 112
Query: 193 E--KGI-----------HKSKIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYV 239
KGI + +++ K II D L + NF +ML D P ++ + V
Sbjct: 113 TDIKGIKLISKFPTIVANYARLRKGLDIIEPDPKLSHSENFLYMLYGDRPNEIKSKAMDV 172
Query: 240 TI--HSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVD 297
T+ H DHE N S +VAS SD Y S A ++ L GPLHG AN E L K
Sbjct: 173 TLILHIDHEM-NASTFASLVVASTFSDLYSSIVAGISALKGPLHGGANYEALKMFK---- 227
Query: 298 ECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDD------ 351
E G + E++ DY+ L++ + + GFGH V + DPR +++A K L +
Sbjct: 228 EIG---SPEKVNDYILNRLSNKQRIMGFGHRVYKTYDPRARILKQYA-KLLAEKEGGEIY 283
Query: 352 PLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLG 411
L+Q+ K+ E+ + LG K +PNVD S ++ G E ++ +F +R +G
Sbjct: 284 TLYQIAEKVEEIG---IKYLGP-KGIYPNVDFFSSIVFYSLGF-EPDFFPAVFASARVVG 338
Query: 412 ICSQLI 417
+ ++
Sbjct: 339 WVAHIM 344
>pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|B Chain B, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|C Chain C, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|D Chain D, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
Length = 377
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/329 (29%), Positives = 157/329 (47%), Gaps = 55/329 (16%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEF---- 188
G++P +++++ S L R +P ++ ++ PV+AHPM+ + V SEF
Sbjct: 53 GRLPRRQELEEFSAALARRRALPAHLLESFKRYPVSAHPMSFLRTAV------SEFGMLD 106
Query: 189 -------QEA-YEKG----------IHKSKIYKDGK-IIPKDDSLDYGGNFSHML-GFD- 227
+EA YEKG + +K K+GK IP + L + NF +M G +
Sbjct: 107 PTEGDISREALYEKGLDLIAKFATIVAANKRLKEGKEPIPPREDLSHAANFLYMANGVEP 166
Query: 228 DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 287
P+ LM + +H++H G N S T S +D Y + AA+ L GP HG AN+
Sbjct: 167 SPEQARLMDAALILHAEH-GFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEA 225
Query: 288 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRY----TCQREF 343
V+ ++ E G T E+ +++V + L + + G GH V + DPR R
Sbjct: 226 VM----RMIQEIG---TPERAREWVREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLV 278
Query: 344 ALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNP---WPNVDAHSGVLLNHFGLAEARYY 400
A KH SK ++++ + + GKV NP +PNVD +SGV+ + G + ++
Sbjct: 279 AEKHGH--------SKEYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDLGFS-LEFF 329
Query: 401 TVLFGVSRSLGICSQLIWDRALGLPLERP 429
T +F V+R G ++ + L L RP
Sbjct: 330 TPIFAVARISGWVGHILEYQELDNRLLRP 358
>pdb|2P2W|A Chain A, Crystal Structure Of Citrate Synthase From Thermotoga
Maritima Msb8
Length = 367
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 141/302 (46%), Gaps = 36/302 (11%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEF---- 188
GK+P+K +++ +++ D +P + LP H + + L +
Sbjct: 52 GKLPTKSELEEFKRKMADYRELPAEALGILYHLPKNLHYIDVLK---IFLSIHGSMDGND 108
Query: 189 QEAYEKGIHKSKI----------YKDGK--IIPKDDSLDYGGNFSHML-GFDDPKMLELM 235
++ EK I + + Y GK I P+ D L + NF +M+ G + K+ L
Sbjct: 109 EDLREKAIRVASVFPTILAYYYRYSKGKELIRPRKD-LSHVENFYYMMFGERNEKIRLLE 167
Query: 236 RLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSV 295
++ + + N S ++AS LSD Y AL L GPLHG A+++V +
Sbjct: 168 SAFILLME--QDINASTFAALVIASTLSDLYSCIVGALGALKGPLHGGASEKV----PPM 221
Query: 296 VDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQ 355
++E G + ++++++V K L + + GFGH V + DPR + +H PD LF+
Sbjct: 222 LEEIG---SEDRVEEFVQKCLKEKRKIMGFGHRVYKTYDPRAVFLKRVLQEHFPDSKLFR 278
Query: 356 LVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQ 415
+ SKL E + K+KN +PNVD +S VL G +T LF +R +G +
Sbjct: 279 IASKLEEYIVS-----NKIKNIYPNVDLYSSVLFEELGFPR-NMFTALFATARVVGWTAH 332
Query: 416 LI 417
+I
Sbjct: 333 VI 334
>pdb|2H12|A Chain A, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|B Chain B, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|C Chain C, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|D Chain D, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|E Chain E, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|F Chain F, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
Length = 436
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 105/407 (25%), Positives = 167/407 (41%), Gaps = 63/407 (15%)
Query: 65 AQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRF-RGLSIPECQKLLPAAKPDXXXXX 123
AQLG T D G + + +D D+G+ RG P A+
Sbjct: 43 AQLGVFTFDPGYGETAACNS---KITFIDGDKGVLLHRGY---------PIAQLAENASY 90
Query: 124 XXXXXXXXTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQ 183
G++P+K Q D + L + + + + + AHPM V AL
Sbjct: 91 EEVIYLLLNGELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGALS 150
Query: 184 VQSEFQEAYEKGIHKSK-------------------IYKDGK--IIPKDDSLDYGGNFSH 222
+ + +A + I ++ Y G+ I P++D L+Y NF
Sbjct: 151 --AFYPDANDIAIPANRDLAAMRLIAKIPTIAAWAYKYTQGEAFIYPRND-LNYAENFLS 207
Query: 223 MLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNG 275
M+ +P + M + +H+DHE N S T L S ++P+ AA +
Sbjct: 208 MMFARMSEPYKVNPVLARAMNRILILHADHEQ-NASTSTVRLAGSTGANPFACIAAGIAA 266
Query: 276 LAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDP 335
L GP HG AN+ VL + + + Q+KD NSG + GFGH V + DP
Sbjct: 267 LWGPAHGGANEAVLKMLARIGKKENIPAFIAQVKDK-----NSGVKLMGFGHRVYKNFDP 321
Query: 336 R-----YTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLN 390
R TC + DDPL L +L ++ + + +PNVD +SG++L
Sbjct: 322 RAKIMQQTCHEVLTELGIKDDPLLDLAVELEKIA--LSDDYFVQRKLYPNVDFYSGIILK 379
Query: 391 HFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLP---LERPKSVTL 434
G+ + +TVLF V+R+ G SQ W + P + RP+ + +
Sbjct: 380 AMGIPTS-MFTVLFAVARTTGWVSQ--WKEMIEEPGQRISRPRQLYI 423
>pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furiosus
pdb|1AJ8|B Chain B, Citrate Synthase From Pyrococcus Furiosus
Length = 371
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 144/305 (47%), Gaps = 36/305 (11%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMAL-------QVQ 185
GK+PS +++ KEL +P V + ++ALP HPM + + L +
Sbjct: 51 GKLPSLSELENFKKELAKSRGLPKEVIEIMEALPKNTHPMGALRTIISYLGNIDDSGDIP 110
Query: 186 SEFQEAYEKGIH-KSKI---------YKDG-KIIPKDDSLDYGGNFSHML-GFDDPKMLE 233
+E Y GI +KI K+G + +P + L + NF +ML G + PK E
Sbjct: 111 VTPEEVYRIGISVTAKIPTIVANWYRIKNGLEYVPPKEKLSHAANFLYMLHGEEPPKEWE 170
Query: 234 -LMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWI 292
M + + ++++HE N S V S LSD Y + A + L GP+HG A +E
Sbjct: 171 KAMDVALILYAEHE-INASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAVEE----- 224
Query: 293 KSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDP 352
+ + E + E+++++ +K L + + G GH V + DPR +++A K L D
Sbjct: 225 --AIKQFMEIGSPEKVEEWFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYASK-LGDKK 281
Query: 353 LFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLA-EARYYTVLFGVSRSLG 411
LF++ +L +V L+K G NVD SG++ +G+ YT +F + R G
Sbjct: 282 LFEIAERLERLVEEYLSKKGIS----INVDYWSGLVF--YGMKIPIELYTTIFAMGRIAG 335
Query: 412 ICSQL 416
+ L
Sbjct: 336 WTAHL 340
>pdb|3O8J|A Chain A, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|B Chain B, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|C Chain C, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|D Chain D, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|E Chain E, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|F Chain F, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|G Chain G, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|H Chain H, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|I Chain I, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|J Chain J, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
Length = 404
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 142/310 (45%), Gaps = 37/310 (11%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
GK+P++++++ +L+ +P V ++ALP +HPM +GV AL +E +
Sbjct: 83 GKLPTRDELNAYKSKLKALRGLPANVRTVLEALPAASHPMDVMRTGVSALGCTLPEKEGH 142
Query: 193 EKG--------------------IHKSKIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKML 232
H S + +I P+ D GG+F H+L + P
Sbjct: 143 TVSGARDIADKLLASLSSILLYWYHYS--HNGERIQPETDDDSIGGHFLHLLHGEKPTQS 200
Query: 233 --ELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLL 290
+ M + + ++++HE N S T ++A SD Y + A+ L GP HG AN EV L
Sbjct: 201 WEKAMHISLVLYAEHE-FNASTFTSRVIAGTGSDVYSAIIGAIGALRGPKHGGAN-EVSL 258
Query: 291 WIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPD 350
I+ + T ++ + + K + + +VV GFGH V DPR+ + A K L +
Sbjct: 259 EIQQRYE------TPDEAEADIRKRVENKEVVIGFGHPVYTIADPRHQVIKRVA-KQLSE 311
Query: 351 DPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSL 410
+ K++ + + T + + K +PN+D S V N G+ +T LF ++R
Sbjct: 312 E---GGSLKMYHIADRLETVMWETKKMFPNLDWFSAVSYNMMGVP-TEMFTPLFVIARVT 367
Query: 411 GICSQLIWDR 420
G + +I R
Sbjct: 368 GWAAHIIEQR 377
>pdb|3L96|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli
pdb|3L96|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli
pdb|3L97|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With S-
Carboxymethyl-Coa
pdb|3L97|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With S-
Carboxymethyl-Coa
pdb|3L98|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Nadh
pdb|3L98|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Nadh
pdb|3L99|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Oxaloacetate
pdb|3L99|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Oxaloacetate
Length = 426
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 104/430 (24%), Positives = 181/430 (42%), Gaps = 68/430 (15%)
Query: 58 VKSELGKAQLGNITVDMVIGGMRGM----------TGLLWETSLLDPDEGIRF-RGLSIP 106
V+ ++ K LG +D+ G +G+ T + + +D DEGI RG I
Sbjct: 15 VELDVLKGTLGQDVIDIRTLGSKGVFTFDPGFTSTTSCESKITFIDGDEGILLHRGFPID 74
Query: 107 ECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALP 166
+ G+ P++EQ D + + + + + A
Sbjct: 75 QLA---------TDSNYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFR 125
Query: 167 VTAHPMTQFA--SGVMA------LQVQSEFQEAYEKGIHKSKI---------YKDGK--I 207
+HPM +G +A L V + SK+ Y G+ +
Sbjct: 126 RDSHPMAVMCGITGALAAFYHDSLDVNNPRHREIAAFRLLSKMPTMAAMCYKYSIGQPFV 185
Query: 208 IPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVAS 260
P++D L Y GNF +M+ +P + M + +H+DHE N S T S
Sbjct: 186 YPRND-LSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQ-NASTSTVRTAGS 243
Query: 261 ALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV--WKTLNS 318
+ ++P+ AA + L GP HG AN+ L +++E G+ E + ++V K N
Sbjct: 244 SGANPFACIAAGIASLWGPAHGGANEAAL----KMLEEIGKK---ENIPEFVRRAKDKND 296
Query: 319 GKVVPGFGHGVLRKTDPRYTCQREFA---LKHL-PDDPLFQLVSKLFEVV--PPILTKLG 372
+ GFGH V + DPR T RE LK L D L ++ +L + P +
Sbjct: 297 SFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIE-- 354
Query: 373 KVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSV 432
K +PNVD +SG++L G+ + +TV+F ++R++G + + G+ + RP+ +
Sbjct: 355 --KKLYPNVDFYSGIILKAMGIPSS-MFTVIFAMARTVGWIAHWSEMHSDGMKIARPRQL 411
Query: 433 TLDWIEKNCK 442
+ +++ K
Sbjct: 412 YTGYEKRDFK 421
>pdb|4E6Y|A Chain A, Type Ii Citrate Synthase From Vibrio Vulnificus
Length = 432
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 135/328 (41%), Gaps = 46/328 (14%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
G+ P++EQ + + V + + AHP V AL
Sbjct: 96 GEAPTREQYEKFKTTVTRHTXVHEQIASFFHGFRRDAHPXAVXCGVVGALAAFYHDSLDI 155
Query: 193 EKGIHKSKI-----------------YKDGK--IIPKDDSLDYGGNFSHMLGFD------ 227
+H+ Y G+ I P++D L Y NF H
Sbjct: 156 NNDLHREITAYRLLSKXPTLAAXCYKYSTGQPFIYPRND-LSYAENFLHXXFATPCEEYE 214
Query: 228 -DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 286
+P + T+H+DHE N S T L S+ ++P+ AA + L GP HG AN+
Sbjct: 215 VNPVVARAXDKIFTLHADHEQ-NASTSTVRLAGSSGANPFACIAAGIASLWGPAHGGANE 273
Query: 287 EVLLWIKSV--VDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFA 344
L ++ + VD E V + KD ++ + GFGH V + DPR T RE
Sbjct: 274 ACLKXLEEIGSVDNIPEYVDRAKDKDDPFR-------LXGFGHRVYKNYDPRATVXRETC 326
Query: 345 LKHLPD----DPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYY 400
+ L + DPL + +L + + + K +PNVD +SG++L G+ + +
Sbjct: 327 HEVLKELNIQDPLLDVAXELERIA--LSDEYFVSKKLYPNVDFYSGIILKAIGIPVSX-F 383
Query: 401 TVLFGVSRSLGICSQLIWDRALGLPLER 428
TV+F +SR++G + W+ PL R
Sbjct: 384 TVIFAISRTIGWIAH--WNEXHSDPLNR 409
>pdb|2IBP|A Chain A, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
pdb|2IBP|B Chain B, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
Length = 409
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 19/219 (8%)
Query: 209 PKDDSLDYGGNFSHMLGFDDPKMLEL--MRLYVTIHSDHEGGNVSAHTGHLVASALSDPY 266
P+DD L + NF +M+ +P L + LY+ +H+DHE S H+VAS LSD Y
Sbjct: 177 PRDD-LGHAANFLYMMFGREPDPLASRGIDLYLILHADHEV-PASTFAAHVVASTLSDLY 234
Query: 267 LSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFG 326
S AAA+ L GPLHG AN+ + +++ + E G +++ + K G + G G
Sbjct: 235 SSVAAAIAALKGPLHGGANE---MAVRNYL-EIGTPAKAKEIVEAATKP--GGPKLMGVG 288
Query: 327 HGVLRKTDPRYTCQREFALKHLPD--DP--LFQLVSKLFEVVPPILTKLGKVKNPWPNVD 382
H V + DPR +EF+ ++ DP LF + S + + V + + + +PNVD
Sbjct: 289 HRVYKAYDPRAKIFKEFSRDYVAKFGDPQNLFAIASAIEQEV--LSHPYFQQRKLYPNVD 346
Query: 383 AHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLI--WD 419
SG+ + G+ Y+T +F +SR +G + ++ W+
Sbjct: 347 FWSGIAFYYMGIP-YEYFTPIFAMSRVVGWVAHVLEYWE 384
>pdb|1K3P|A Chain A, Three Dimensional Structure Analysis Of The Type Ii
Citrate From E.Coli
pdb|1K3P|B Chain B, Three Dimensional Structure Analysis Of The Type Ii
Citrate From E.Coli
Length = 426
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 151/344 (43%), Gaps = 48/344 (13%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFA--SGVMA------LQV 184
G+ P++EQ D + + + + + A +HPM +G +A L V
Sbjct: 92 GEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDV 151
Query: 185 QSEFQEAYEKGIHKSKI---------YKDGK--IIPKDDSLDYGGNFSHMLGFD------ 227
+ SK+ Y G+ + P++D L Y GNF +M+
Sbjct: 152 NNPRHREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRND-LSYAGNFLNMMFSTPCEPYE 210
Query: 228 -DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 286
+P + M + +H+DHE N S T S+ ++P+ AA + L GP HG AN+
Sbjct: 211 VNPILERAMDRILILHADHEQ-NASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANE 269
Query: 287 EVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGKVVPGFGHGVLRKTDPRYTCQREFA 344
L ++ + + + + ++ K N + GFGH V + DPR T RE
Sbjct: 270 AALKMLEEI-------SSVKHIPEFFRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETC 322
Query: 345 ---LKHL-PDDPLFQLVSKLFEVV--PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEAR 398
LK L D L ++ +L + P + K +PNVD +SG++L G+ +
Sbjct: 323 HEVLKELGTKDDLLEVAMELENIALNDPYFIE----KKLYPNVDFYSGIILKAMGIPSS- 377
Query: 399 YYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNCK 442
+TV+F ++R++G + + G+ + RP+ + + +++ K
Sbjct: 378 MFTVIFAMARTVGWIAHWSEMHSDGMKIARPRQLYTGYEKRDFK 421
>pdb|1OWB|A Chain A, Three Dimensional Structure Analysis Of The Variant R109l
Nadh Complex Of Type Ii Citrate Synthase From E. Coli
pdb|1OWB|B Chain B, Three Dimensional Structure Analysis Of The Variant R109l
Nadh Complex Of Type Ii Citrate Synthase From E. Coli
pdb|1OWC|A Chain A, Three Dimensional Structure Analysis Of The R109l Variant
Of The Type Ii Citrate Synthase From E. Coli
pdb|1OWC|B Chain B, Three Dimensional Structure Analysis Of The R109l Variant
Of The Type Ii Citrate Synthase From E. Coli
Length = 427
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 151/344 (43%), Gaps = 48/344 (13%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFA--SGVMA------LQV 184
G+ P++EQ D + + + + + A +HPM +G +A L V
Sbjct: 93 GEKPTQEQYDEFKTTVTLHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDV 152
Query: 185 QSEFQEAYEKGIHKSKI---------YKDGK--IIPKDDSLDYGGNFSHMLGFD------ 227
+ SK+ Y G+ + P++D L Y GNF +M+
Sbjct: 153 NNPRHREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRND-LSYAGNFLNMMFSTPCEPYE 211
Query: 228 -DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 286
+P + M + +H+DHE N S T S+ ++P+ AA + L GP HG AN+
Sbjct: 212 VNPILERAMDRILILHADHEQ-NASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANE 270
Query: 287 EVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGKVVPGFGHGVLRKTDPRYTCQREFA 344
L ++ + + + + ++ K N + GFGH V + DPR T RE
Sbjct: 271 AALKMLEEI-------SSVKHIPEFFRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETC 323
Query: 345 ---LKHL-PDDPLFQLVSKLFEVV--PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEAR 398
LK L D L ++ +L + P + K +PNVD +SG++L G+ +
Sbjct: 324 HEVLKELGTKDDLLEVAMELENIALNDPYFIE----KKLYPNVDFYSGIILKAMGIPSS- 378
Query: 399 YYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNCK 442
+TV+F ++R++G + + G+ + RP+ + + +++ K
Sbjct: 379 MFTVIFAMARTVGWIAHWSEMHSDGMKIARPRQLYTGYEKRDFK 422
>pdb|1NXE|A Chain A, A Novel Nadh Allosteric Regulator Site Is Found On The
Surfa Hexameric Type Ii Phe383ala Variant Of Citrate
Synthase
pdb|1NXE|B Chain B, A Novel Nadh Allosteric Regulator Site Is Found On The
Surfa Hexameric Type Ii Phe383ala Variant Of Citrate
Synthase
pdb|1NXG|A Chain A, The F383a Variant Of Type Ii Citrate Synthase Complexed
With
pdb|1NXG|B Chain B, The F383a Variant Of Type Ii Citrate Synthase Complexed
With
Length = 427
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 150/344 (43%), Gaps = 48/344 (13%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFA--SGVMA------LQV 184
G+ P++EQ D + + + + + A +HPM +G +A L V
Sbjct: 93 GEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDV 152
Query: 185 QSEFQEAYEKGIHKSKI---------YKDGK--IIPKDDSLDYGGNFSHMLGFD------ 227
+ SK+ Y G+ + P++D L Y GNF +M+
Sbjct: 153 NNPRHREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRND-LSYAGNFLNMMFSTPCEPYE 211
Query: 228 -DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 286
+P + M + +H+DHE N S T S+ ++P+ AA + L GP HG AN+
Sbjct: 212 VNPILERAMDRILILHADHEQ-NASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANE 270
Query: 287 EVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGKVVPGFGHGVLRKTDPRYTCQREFA 344
L ++ + + + + ++ K N + GFGH V + DPR T RE
Sbjct: 271 AALKMLEEI-------SSVKHIPEFFRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETC 323
Query: 345 ---LKHL-PDDPLFQLVSKLFEVV--PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEAR 398
LK L D L ++ +L + P + K +PNVD +SG++L G+ +
Sbjct: 324 HEVLKELGTKDDLLEVAMELENIALNDPYFIE----KKLYPNVDFYSGIILKAMGIPSS- 378
Query: 399 YYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNCK 442
+TV+ ++R++G + + G+ + RP+ + + +++ K
Sbjct: 379 MFTVIAAMARTVGWIAHWSEMHSDGMKIARPRQLYTGYEKRDFK 422
>pdb|1O7X|A Chain A, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|B Chain B, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|C Chain C, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|D Chain D, Citrate Synthase From Sulfolobus Solfataricus
Length = 377
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 154/369 (41%), Gaps = 45/369 (12%)
Query: 72 VDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDXXXXXXXXXXXX 130
+ +V G+ + + + +D ++GI R+RG +I +
Sbjct: 1 MSVVSKGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNY---------GSYEETIYLM 51
Query: 131 XTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMAL-QVQSEF- 188
GK+P+K++++ L +L + VP V I +P A + G AL + F
Sbjct: 52 LYGKLPTKKELNDLKAKLNEEYEVPQEVLDTIYLMPKEADAIGLLEVGTAALASIDKNFK 111
Query: 189 --QEAYEKGIH--------KSKIY--KDGKI--IPKDDSLDYGGNFSHMLGFDDPKMLEL 234
+ EK I + +Y K+G IP + S + +F +P E+
Sbjct: 112 WKENDKEKAISIIAKMATLVANVYRRKEGNKPRIP-EPSDSFAKSFLLASFAREPTTDEI 170
Query: 235 --MRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWI 292
M + +++DHE S + AS LSD Y S AAL L GPLHG A +E
Sbjct: 171 NAMDKALILYTDHEVP-ASTTAALVAASTLSDMYSSLTAALAALKGPLHGGAAEEAF--- 226
Query: 293 KSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDP 352
K ++ N D K +N + GFGH V + DPR ++ AL + +
Sbjct: 227 KQFIEIGDPNRVQNWFND---KVVNQKNRLMGFGHRVYKTYDPRAKIFKKLALTLIERNA 283
Query: 353 ----LFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSR 408
F++ KL E + K K +PN D +SG++ G +T LF +SR
Sbjct: 284 DARRYFEIAQKLEE----LGIKQFSSKGIYPNTDFYSGIVFYALGFP-VYMFTALFALSR 338
Query: 409 SLGICSQLI 417
+LG + +I
Sbjct: 339 TLGWLAHII 347
>pdb|3TQG|A Chain A, Structure Of The 2-Methylcitrate Synthase (Prpc) From
Coxiella Burnetii
pdb|3TQG|B Chain B, Structure Of The 2-Methylcitrate Synthase (Prpc) From
Coxiella Burnetii
Length = 375
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 131/304 (43%), Gaps = 30/304 (9%)
Query: 134 KVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMAL---QVQSEFQE 190
K+P+K ++D +K+L + ++P + ++ +P ++HP +G L + ++ F+
Sbjct: 58 KLPTKSELDAYTKKLVNLRSLPPALKDTLERIPASSHPXDVXRTGCSXLGNLEPENGFEN 117
Query: 191 AYEKGIHKSKIY-----------KDGKIIPKD-DSLDYGGNFSHMLGFDDPKM--LELMR 236
I+ GK I + D L G F H+L ++
Sbjct: 118 EQNIADRLVAIFPAIQCYWYHYSHHGKRIDTELDDLTLAGYFLHLLLGKKAAQXAIDCXN 177
Query: 237 LYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVV 296
+ ++++HE N S + ++ LSD Y + AA+ L GPLHG AN+ +
Sbjct: 178 ASLILYAEHEF-NASTFAARVCSATLSDIYSAVTAAIATLRGPLHGGANE-------AAX 229
Query: 297 DECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQL 356
D T + + + L + +++ GFGH V R+ DPR + +A K P+
Sbjct: 230 DLIXLYKTPSEAIAGIKRKLANKELIXGFGHAVYRERDPRNAIIKSWAQKLAPN----AA 285
Query: 357 VSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQL 416
LF++ I K +PN+D +S HF + +T +F SR G C+ +
Sbjct: 286 DGYLFDISDAIENTXQDEKKLFPNLDFYSATAY-HFLNIPTKLFTPIFVXSRVTGWCAHI 344
Query: 417 IWDR 420
R
Sbjct: 345 FEQR 348
>pdb|1VGM|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
pdb|1VGM|B Chain B, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
Length = 378
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 105/386 (27%), Positives = 169/386 (43%), Gaps = 58/386 (15%)
Query: 80 RGMTGLLWETSLLDPDEGI----RFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKV 135
RG+ ++ +T+ L +GI R+RG I + L+ A + G++
Sbjct: 7 RGLENVIIKTTGLTYIDGINGILRYRGYDIND---LVNYASYEELIHLMLY------GEL 57
Query: 136 PSKEQVDGLSKELRDRATVPDYVYKAIDALP--VTAHPMTQFASGVMALQVQSEFQEAYE 193
P+++Q++ + + + VP+ V I ++P A M + A G++A ++ A
Sbjct: 58 PNRQQLNQIKGIINESFEVPEQVISTIFSMPRNCDAIGMMETAFGILASIYDPKWNRATN 117
Query: 194 KGIHKSKIYKDGKII-----------PK--DDSLDYGGNFSHMLGFDDPKMLEL--MRLY 238
K + I K I PK + S Y +F P E+ M
Sbjct: 118 KELAVQIIAKTATITANIYRAKEGLKPKIPEPSESYAESFLAATFGKKPTQEEIKAMDAS 177
Query: 239 VTIHSDHEGGNVSAHTGHLVASA-LSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVD 297
+ +++DHE ++ T LVAS+ LSD Y AAL L GPLHG A +E K V
Sbjct: 178 LILYTDHEVP--ASTTAALVASSTLSDMYSCIVAALAALKGPLHGGAAEEAF---KQFV- 231
Query: 298 ECGENVTTEQLKDYVWKTLNSGKV-VPGFGHGVLRKTDPRY----TCQREFALKHLPDDP 352
E G + E + + + GK + GFGH V + DPR T + FA K+
Sbjct: 232 EIG---SVENADKWFEEKIIKGKSRLMGFGHRVYKTYDPRAKIFKTLAKSFAEKN----- 283
Query: 353 LFQLVSKLFEVVPPILTKLG----KVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSR 408
+ V K +E+ I KLG K+ +PN D +SG++ G +T LF +SR
Sbjct: 284 --ENVKKYYEIAERI-EKLGVDTFGSKHIYPNTDFYSGIVFYALGFP-IYMFTSLFALSR 339
Query: 409 SLGICSQLIWDRALGLPLERPKSVTL 434
LG + +I L RP+++ +
Sbjct: 340 VLGWLAHIIEYVEEQHRLIRPRALYI 365
>pdb|1A59|A Chain A, Cold-Active Citrate Synthase
Length = 378
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 132/320 (41%), Gaps = 36/320 (11%)
Query: 134 KVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMAL-----QVQSEF 188
++P+ ++ R + + V AID L HPM + V L + Q
Sbjct: 56 ELPNDSELKAFVNFERSHRKLDENVKGAIDLLSTACHPMDVARTAVSVLGANHARAQDSS 115
Query: 189 QEA-YEKGI-----------HKSKIYKDGKIIPKDDSLDYGGNFSHMLGFDD--PKMLEL 234
EA EK + + + + ++I + LDY NF M ++ P+++E
Sbjct: 116 PEANLEKAMSLLATFPSVVAYDQRRRRGEELIEPREDLDYSANFLWMTFGEEAAPEVVEA 175
Query: 235 MRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKS 294
+ + ++++H N S T ++ S L+D + + A+ L GPLHG AN+ V+ +
Sbjct: 176 FNVSMILYAEH-SFNASTFTARVITSTLADLHSAVTGAIGALKGPLHGGANEAVMHTFEE 234
Query: 295 VVDECGENVTTEQLKDYVW--KTLNSGKVVPGFGHGVLRKTDPRYTCQR---EFALKHLP 349
+ E++ + W L K V GFGH V + D R + + +KH
Sbjct: 235 IGIRKDESLDEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSRVPTMKSALDAMIKHYD 294
Query: 350 DDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRS 409
+ L + L + + K PN+D +G N G + +T LF +R
Sbjct: 295 RPEMLGLYNGL-------EAAMEEAKQIKPNLDYPAGPTYNLMGF-DTEMFTPLFIAARI 346
Query: 410 LGICSQL---IWDRALGLPL 426
G + + + D AL PL
Sbjct: 347 TGWTAHIMEQVADNALIRPL 366
>pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|B Chain B, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|C Chain C, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|D Chain D, Structure Of Bacillus Subtilis Citrate Synthase
Length = 363
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 128/299 (42%), Gaps = 23/299 (7%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQS-EFQEA 191
GK+PS E++ +L +P+++ + I +LP M+ + V AL + F
Sbjct: 51 GKLPSTEELQVFKDKLAAERNLPEHIERLIQSLPNNMDDMSVLRTVVSALGENTYTFHPK 110
Query: 192 YEKGI-----------HKSKIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLE--LMRLY 238
E+ I ++ + + + I + N+ +ML + P + + Y
Sbjct: 111 TEEAIRLIAITPSIIAYRKRWTRGEQAIAPSSQYGHVENYYYMLTGEQPSEAKKKALETY 170
Query: 239 VTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDE 298
+ + ++H G N S + + S SD + AAL + GPLHG A V ++++
Sbjct: 171 MILATEH-GMNASTFSARVTLSTESDLVSAVTAALGTMKGPLHGGAPSAV----TKMLED 225
Query: 299 CGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVS 358
GE E + Y+ + L G+ + GFGH V + DPR R+ A + +D L
Sbjct: 226 IGEK---EHAEAYLKEKLEKGERLMGFGHRVYKTKDPRAEALRQKAEEVAGNDRDLDLAL 282
Query: 359 KLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLI 417
+ +L + + NV+ ++ ++ + +T F SR +G C+ ++
Sbjct: 283 HVEAEAIRLLEIYKPGRKLYTNVEFYAAAVMRAIDF-DDELFTPTFSASRMVGWCAHVL 340
>pdb|2R26|A Chain A, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|B Chain B, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|C Chain C, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|D Chain D, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
Length = 384
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 84/202 (41%), Gaps = 8/202 (3%)
Query: 232 LELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLW 291
++ M + +++DHE S G + S LSD Y AAL L GPLHG A + +
Sbjct: 174 IDAMNTALILYTDHEV-PASTTAGLVAVSTLSDMYSGITAALAALKGPLHGGAAEAAIAQ 232
Query: 292 IKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDD 351
+ D + + D + +N K + GFGH V + DPR + A K
Sbjct: 233 FDEIKDPA---MVEKWFNDNI---INGKKRLMGFGHRVYKTYDPRAKIFKGIAEKLSSKK 286
Query: 352 PLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLA-EARYYTVLFGVSRSL 410
P V ++ + K K +PN D SG++ G YT LF +SR
Sbjct: 287 PEVHKVYEIATKLEDFGIKAFGSKGIYPNTDYFSGIVYMSIGFPLRNNIYTALFALSRVT 346
Query: 411 GICSQLIWDRALGLPLERPKSV 432
G + I L RP++V
Sbjct: 347 GWQAHFIEYVEEQQRLIRPRAV 368
>pdb|2IFC|A Chain A, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|B Chain B, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|C Chain C, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|D Chain D, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2R9E|A Chain A, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|B Chain B, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|C Chain C, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|D Chain D, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
Length = 385
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 84/202 (41%), Gaps = 8/202 (3%)
Query: 232 LELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLW 291
++ M + +++DHE S G + S LSD Y AAL L GPLHG A + +
Sbjct: 175 IDAMNTALILYTDHEV-PASTTAGLVAVSTLSDMYSGITAALAALKGPLHGGAAEAAIAQ 233
Query: 292 IKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDD 351
+ D + + D + +N K + GFGH V + DPR + A K
Sbjct: 234 FDEIKDPA---MVEKWFNDNI---INGKKRLMGFGHRVYKTYDPRAKIFKGIAEKLSSKK 287
Query: 352 PLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLA-EARYYTVLFGVSRSL 410
P V ++ + K K +PN D SG++ G YT LF +SR
Sbjct: 288 PEVHKVYEIATKLEDFGIKAFGSKGIYPNTDYFSGIVYMSIGFPLRNNIYTALFALSRVT 347
Query: 411 GICSQLIWDRALGLPLERPKSV 432
G + I L RP++V
Sbjct: 348 GWQAHFIEYVEEQQRLIRPRAV 369
>pdb|3HWK|A Chain A, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|B Chain B, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|C Chain C, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|D Chain D, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|E Chain E, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|F Chain F, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|G Chain G, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|H Chain H, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
Length = 414
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 130/318 (40%), Gaps = 35/318 (11%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
G++P+ ++ S+ R V + + LP HPM + + L + ++
Sbjct: 99 GELPTDAELALFSQRERASRRVDRSMLSLLAKLPDNCHPMDVVRTAISYLGAEDPDED-- 156
Query: 193 EKGIHKSKIYKDGKIIPKDDSLD-----------------YGGNFSHMLGFDDPK--MLE 233
+ +++K + ++P ++D Y NF HM + P+ ++
Sbjct: 157 DAAANRAKAMRMMAVLPTIVAIDMRRRRGLPPIAPHSGLGYAQNFLHMCFGEVPETAVVS 216
Query: 234 LMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIK 293
+ ++++H G N S +V S SD Y + A+ L G LHG AN+ V+ +
Sbjct: 217 AFEQSMILYAEH-GFNASTFAARVVTSTQSDIYSAVTGAIGALKGRLHGGANEAVMHDMI 275
Query: 294 SVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPL 353
+ D ++++ L + + GFGH V R D R + AL+ +
Sbjct: 276 EIGDPA-------NAREWLRAKLARKEKIMGFGHRVYRHGDSRVPTMKR-ALERVGTVRD 327
Query: 354 FQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGIC 413
Q +++V + ++ PN+D +G G A +T +F +SR G
Sbjct: 328 GQRWLDIYQV---LAAEMASATGILPNLDFPTGPAYYLMGFDIAS-FTPIFVMSRITGWT 383
Query: 414 SQLIWDRALGLPLERPKS 431
+ I ++A L RP S
Sbjct: 384 AH-IMEQATANALIRPLS 400
>pdb|3D37|A Chain A, The Crystal Structure Of The Tail Protein From Neisseria
Meningitidis Mc58
pdb|3D37|B Chain B, The Crystal Structure Of The Tail Protein From Neisseria
Meningitidis Mc58
Length = 381
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 4 FRSVTALSRLRSRVGQQSNLSNSVRWLQMQSSADLDLHSQLKEMIPEQQERL----KKVK 59
F VT L++ R G + + ++W+ + + LH + K ++ + L K+ K
Sbjct: 213 FSEVTFLAQSHGRSGDSAK--HDLKWVYKDPT--MTLH-RPKTVVVSDADNLAALQKQAK 267
Query: 60 SELGKAQLGNITVDMVIGGMRGMTGLLWETSL----LDPDEGI 98
+L +L T+ + +GG + G+LW+ L +D + GI
Sbjct: 268 KQLADWRLEGFTLTITVGGHKTRDGVLWQPGLRVHVIDDEHGI 310
>pdb|2GH9|A Chain A, Thermus Thermophilus Maltotriose Binding Protein Bound
With Maltotriose
Length = 386
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 344 ALKHLPDDPLFQLVSKLFEVVPPI--LTKLGKVKNPWPN 380
A+K L DP+ SK+F + P+ + ++GKV PW N
Sbjct: 312 AVKQLEKDPVVAGFSKVFPLGAPMPNIPEMGKVWGPWGN 350
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
pdb|4EHM|B Chain B, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 276 LAGPLHGLANQEVLLWIKSVVDECG 300
L G LH + +E+L++IKS ECG
Sbjct: 58 LMGQLHRMNKEEILVFIKSCQHECG 82
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|D Chain D, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1LTX|B Chain B, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
pdb|3C72|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
pdb|3DSS|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 276 LAGPLHGLANQEVLLWIKSVVDECG 300
L G LH + +E+L++IKS ECG
Sbjct: 59 LMGQLHRMNKEEILVFIKSCQHECG 83
>pdb|3L7V|A Chain A, Crystal Structure Of A Hypothetical Protein Smu.1377c From
Streptococcus Mutans Ua159
Length = 295
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 179 VMALQVQSEFQEAYEKGIHKSKIYKDGKIIPK 210
V ++Q + YE+G+ S + KDGK+IP+
Sbjct: 221 VASIQPDKTIETRYEQGVXVSXVDKDGKLIPQ 252
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,238,031
Number of Sequences: 62578
Number of extensions: 546322
Number of successful extensions: 1337
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1245
Number of HSP's gapped (non-prelim): 37
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)