Query 013306
Match_columns 445
No_of_seqs 258 out of 1373
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 02:31:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01793 cit_synth_euk citrat 100.0 1E-118 3E-123 925.3 38.5 400 38-437 2-427 (427)
2 cd06105 ScCit1-2_like Saccharo 100.0 9E-115 2E-119 898.0 41.2 400 40-439 1-426 (427)
3 KOG2617 Citrate synthase [Ener 100.0 1E-112 2E-117 850.0 34.0 404 36-443 23-452 (458)
4 PRK09569 type I citrate syntha 100.0 1E-111 3E-116 876.5 41.2 404 39-443 2-433 (437)
5 cd06106 ScCit3_like Saccharomy 100.0 3E-111 5E-116 872.5 39.2 398 40-437 1-428 (428)
6 cd06103 ScCS-like Saccharomyce 100.0 2E-108 4E-113 851.4 39.1 398 40-437 1-426 (426)
7 PLN02456 citrate synthase 100.0 1.4E-99 3E-104 790.7 31.8 380 36-440 30-447 (455)
8 COG0372 GltA Citrate synthase 100.0 3E-95 7E-100 742.7 34.1 355 68-442 9-385 (390)
9 cd06115 AthCS_per_like Arabido 100.0 1.6E-94 3.5E-99 745.0 36.5 360 54-438 9-405 (410)
10 cd06109 BsCS-I_like Bacillus s 100.0 1.4E-93 3.1E-98 726.5 36.6 338 77-435 1-349 (349)
11 cd06107 EcCS_AthCS-per_like Es 100.0 2.5E-93 5.4E-98 731.4 36.2 340 76-435 6-382 (382)
12 cd06116 CaCS_like Chloroflexus 100.0 4.5E-93 9.7E-98 730.0 35.0 344 76-439 6-379 (384)
13 TIGR01798 cit_synth_I citrate 100.0 2.2E-92 4.8E-97 729.5 35.3 355 55-437 20-408 (412)
14 PRK05614 gltA type II citrate 100.0 1.4E-91 3E-96 725.5 35.5 354 55-436 33-419 (419)
15 PRK14036 citrate synthase; Pro 100.0 2E-91 4.3E-96 716.8 36.2 343 75-440 4-369 (377)
16 PRK12351 methylcitrate synthas 100.0 2.2E-91 4.7E-96 715.7 35.7 338 76-439 9-370 (378)
17 cd06108 Ec2MCS_like Escherichi 100.0 4E-91 8.6E-96 710.9 35.8 336 77-438 1-357 (363)
18 cd06117 Ec2MCS_like_1 Subgroup 100.0 7.3E-91 1.6E-95 710.2 35.3 335 78-438 2-360 (366)
19 cd06112 citrate_synt_like_1_1 100.0 1.4E-90 3.1E-95 710.4 35.8 341 76-439 2-368 (373)
20 PRK14032 citrate synthase; Pro 100.0 8.2E-90 1.8E-94 716.8 37.5 375 46-436 10-437 (447)
21 PRK14035 citrate synthase; Pro 100.0 1.4E-89 3.1E-94 701.3 36.3 339 75-440 3-364 (371)
22 PRK14034 citrate synthase; Pro 100.0 2.4E-89 5.3E-94 699.8 35.0 336 75-437 3-361 (372)
23 PRK14037 citrate synthase; Pro 100.0 3.1E-89 6.6E-94 700.6 35.6 343 75-439 4-369 (377)
24 cd06114 EcCS_like Escherichia 100.0 3.8E-89 8.3E-94 704.7 35.2 341 75-435 27-400 (400)
25 cd06113 citrate_synt_like_1_2 100.0 2.6E-88 5.6E-93 699.7 37.4 350 81-435 10-406 (406)
26 PRK12349 citrate synthase 3; P 100.0 4.2E-86 9.2E-91 676.6 34.0 337 75-437 5-365 (369)
27 cd06111 DsCS_like Cold-active 100.0 7.9E-86 1.7E-90 673.0 35.8 335 77-437 1-358 (362)
28 cd06118 citrate_synt_like_1 Ci 100.0 1E-85 2.3E-90 672.7 35.9 335 77-433 1-358 (358)
29 PF00285 Citrate_synt: Citrate 100.0 1.6E-86 3.5E-91 678.6 29.1 330 78-429 1-356 (356)
30 cd06110 BSuCS-II_like Bacillus 100.0 4.6E-85 1E-89 667.3 36.0 333 77-435 1-356 (356)
31 TIGR01800 cit_synth_II 2-methy 100.0 5.8E-85 1.3E-89 668.6 35.5 337 77-439 1-360 (368)
32 PRK12350 citrate synthase 2; P 100.0 2.8E-85 6.1E-90 664.2 31.7 328 77-437 3-348 (353)
33 PRK14033 citrate synthase; Pro 100.0 2.9E-84 6.4E-89 663.9 36.0 339 75-439 9-370 (375)
34 cd06101 citrate_synt Citrate s 100.0 5.6E-74 1.2E-78 564.0 26.9 259 77-433 1-265 (265)
35 cd06102 citrate_synt_like_2 Ci 100.0 1.1E-66 2.4E-71 514.5 27.7 266 81-435 17-282 (282)
36 PRK06224 citrate synthase; Pro 100.0 1.3E-60 2.9E-65 469.2 25.3 243 84-436 8-257 (263)
37 cd06099 CS_ACL-C_CCL Citrate s 100.0 9.8E-60 2.1E-64 449.7 21.5 208 215-433 1-213 (213)
38 cd06100 CCL_ACL-C Citryl-CoA l 100.0 4.6E-54 1E-58 414.6 23.7 220 102-431 1-221 (227)
39 PLN02522 ATP citrate (pro-S)-l 100.0 2.3E-53 4.9E-58 454.5 24.7 235 80-430 348-600 (608)
40 KOG1254 ATP-citrate lyase [Ene 99.7 2.3E-17 4.9E-22 169.6 5.5 184 231-429 391-591 (600)
41 cd06099 CS_ACL-C_CCL Citrate s 83.5 4.4 9.5E-05 39.0 7.6 61 123-183 2-64 (213)
42 PRK14037 citrate synthase; Pro 76.8 7.1 0.00015 40.9 7.1 63 121-183 150-214 (377)
43 PRK14035 citrate synthase; Pro 68.1 14 0.00031 38.7 6.8 62 121-184 150-215 (371)
44 PRK14034 citrate synthase; Pro 67.2 15 0.00032 38.5 6.8 63 122-184 151-215 (372)
45 PRK12349 citrate synthase 3; P 66.8 19 0.00042 37.6 7.5 62 122-183 154-217 (369)
46 PRK14036 citrate synthase; Pro 65.5 18 0.00039 38.0 7.0 64 121-184 152-217 (377)
47 cd06112 citrate_synt_like_1_1 64.7 16 0.00034 38.4 6.4 60 122-183 152-215 (373)
48 KOG2617 Citrate synthase [Ener 57.8 1.8 3.8E-05 45.4 -2.0 111 69-189 257-391 (458)
49 PRK12351 methylcitrate synthas 56.8 39 0.00083 35.6 7.6 60 122-183 158-221 (378)
50 PRK14033 citrate synthase; Pro 55.9 40 0.00086 35.4 7.5 60 122-183 158-221 (375)
51 cd06111 DsCS_like Cold-active 55.0 40 0.00087 35.2 7.4 62 121-184 147-212 (362)
52 cd06108 Ec2MCS_like Escherichi 52.8 44 0.00095 34.9 7.2 61 121-183 145-209 (363)
53 cd06113 citrate_synt_like_1_2 52.0 45 0.00097 35.4 7.2 60 122-183 175-240 (406)
54 cd06117 Ec2MCS_like_1 Subgroup 49.8 58 0.0013 34.1 7.6 60 122-183 149-212 (366)
55 TIGR01800 cit_synth_II 2-methy 49.0 63 0.0014 33.8 7.7 62 120-183 146-211 (368)
56 PRK14032 citrate synthase; Pro 46.2 65 0.0014 34.6 7.4 60 122-183 205-270 (447)
57 cd06110 BSuCS-II_like Bacillus 46.2 65 0.0014 33.5 7.3 61 121-183 147-211 (356)
58 cd06118 citrate_synt_like_1 Ci 46.0 68 0.0015 33.3 7.4 60 122-183 148-211 (358)
59 cd06109 BsCS-I_like Bacillus s 43.6 72 0.0016 33.1 7.1 60 122-183 137-200 (349)
60 cd07622 BAR_SNX4 The Bin/Amphi 41.3 87 0.0019 29.9 6.8 81 331-422 10-91 (201)
61 PTZ00096 40S ribosomal protein 39.6 22 0.00049 32.3 2.3 23 98-130 15-37 (143)
62 PF07583 PSCyt2: Protein of un 39.4 37 0.00079 32.7 3.9 25 123-147 27-51 (208)
63 cd06101 citrate_synt Citrate s 38.8 1.3E+02 0.0029 29.9 7.9 78 103-183 37-116 (265)
64 PF00285 Citrate_synt: Citrate 38.3 1.2E+02 0.0027 31.4 7.8 61 122-184 148-214 (356)
65 PRK13755 putative mercury tran 36.0 31 0.00067 30.7 2.5 24 399-422 56-79 (139)
66 PRK04038 rps19p 30S ribosomal 35.8 29 0.00063 31.2 2.4 23 98-130 7-29 (134)
67 TIGR01025 rpsS_arch ribosomal 33.3 33 0.0007 30.9 2.3 14 98-111 5-18 (135)
68 PRK08558 adenine phosphoribosy 33.2 87 0.0019 30.7 5.5 56 103-166 24-80 (238)
69 PRK13890 conjugal transfer pro 33.0 1.5E+02 0.0033 25.8 6.4 41 100-148 16-57 (120)
70 PLN00179 acyl- [acyl-carrier p 26.8 7.9E+02 0.017 26.1 12.0 83 254-347 231-314 (390)
71 cd04448 DEP_PIKfyve DEP (Dishe 26.3 1E+02 0.0022 25.0 4.0 32 123-154 32-63 (81)
72 COG0372 GltA Citrate synthase 24.0 2.4E+02 0.0052 29.9 7.1 61 122-182 163-226 (390)
73 PF03461 TRCF: TRCF domain; I 23.3 1.1E+02 0.0023 25.8 3.7 30 134-163 28-58 (101)
74 cd07624 BAR_SNX7_30 The Bin/Am 22.0 3.2E+02 0.0069 25.8 7.0 80 330-420 9-89 (200)
75 PHA02146 hypothetical protein 21.3 1.2E+02 0.0026 24.4 3.2 58 56-137 15-72 (86)
76 PF09702 Cas_Csa5: CRISPR-asso 21.0 91 0.002 26.8 2.7 19 132-150 69-87 (105)
77 PF14098 SSPI: Small, acid-sol 20.1 86 0.0019 24.8 2.2 23 304-326 15-39 (65)
No 1
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic. This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
Probab=100.00 E-value=1.4e-118 Score=925.32 Aligned_cols=400 Identities=80% Similarity=1.293 Sum_probs=378.8
Q ss_pred hhHHHHHHhhChhhHHHHHHHHHhhCCccccceeecccccCccCcceeeeecceecCCCCeeecCCCHHHHhhhCCCCCC
Q 013306 38 LDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKP 117 (445)
Q Consensus 38 ~~lk~~~~~~ip~~~~~~k~l~~~~g~~~~g~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~ 117 (445)
++||++++++||.+++++|+||++||+++||++||+|+++||||+++++|+||+||+++||+||||+|+||++.++++++
T Consensus 2 ~~lk~~~~~~i~~~~~~~~~l~~~~g~~~~~~~t~~~~~~Glrgv~~~~t~iS~iD~~~Gl~yRGy~I~dl~~~~~~~~~ 81 (427)
T TIGR01793 2 LDLKEQLKEKIPEQQEKVKKLRAEHGKVVLGNITVDMVYGGMRGMKGLVWETSVLDPEEGIRFRGLSIPECQKLLPKAKG 81 (427)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeeHhhccCccCCCcccceeceEEcCCCCeEECCeeHHHHHHHhccCCc
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999987777778
Q ss_pred CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCcHHHHHHHHcCCCCCChHHHHHHHHHHhccCChhHHHHHhh--
Q 013306 118 DGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKG-- 195 (445)
Q Consensus 118 ~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~~~y~~~-- 195 (445)
++++.|||++||||||+|||++|+++|+++|.+++.+|++|.++|++||+++|||++|+++|++|++++.|.++|..+
T Consensus 82 ~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsaL~~~~~f~~~y~~~~~ 161 (427)
T TIGR01793 82 GEEPLPEGLLWLLLTGKVPSEEQVDALSAEWRARADLPEHVYKTIDALPVTLHPMAQFATAVMALQVESEFAKAYAKGIH 161 (427)
T ss_pred cccCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhcccccchhhhcccCcc
Confidence 899999999999999999999999999999999999999999999999999999999999999999988776655333
Q ss_pred ---------------hhhhh-----h----hcCCcccCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCCc
Q 013306 196 ---------------IHKSK-----I----YKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS 251 (445)
Q Consensus 196 ---------------~~k~~-----~----~~~g~~~~p~~~l~~a~Nfl~ml~~~~~~~~~~l~~~LiLhADHeg~N~S 251 (445)
+++.+ . |++|+.++|++++||++||++||+++++.++++||++|||||||||+|+|
T Consensus 162 ~~~~~~~~~e~~~~LiAk~P~i~A~~yr~~~~~g~~i~p~~~l~~a~Nfl~Ml~~~~~~~~~~l~~~LiLhADHeg~NaS 241 (427)
T TIGR01793 162 KTKYWEYTYEDSMDLIAKLPTVAAYIYRNMYKDGQSISIDDSKDYSANFAHMLGYDSPSFQELMRLYLTIHSDHEGGNVS 241 (427)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccHHHHHHHHhcCCCHHHHHHHHHHHhhhcccccccch
Confidence 23333 2 45777788999999999999999999999999999999999999989999
Q ss_pred hhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCC
Q 013306 252 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLR 331 (445)
Q Consensus 252 TfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr 331 (445)
|||+||||||++|||+|++|||++|+||+||||||+|++||+++.+++|.+++++++++||++++++|++||||||||||
T Consensus 242 TfaarvvaSt~ad~y~~v~Agi~aL~GPlHGgAn~~vl~~l~ei~~~ig~~~s~~~v~~~i~~~l~~g~~i~GfGH~vyr 321 (427)
T TIGR01793 242 AHTGHLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWLKSVVSECGENVTKEQLKDYIWKTLNSGKVVPGYGHAVLR 321 (427)
T ss_pred hHHHHHhhccCCCHHHHHHHHHhhccCCccCCcHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999887887778999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhH
Q 013306 332 KTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLG 411 (445)
Q Consensus 332 ~~DPRa~~L~~~a~~~~~~~~~~~la~~le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~G 411 (445)
.+|||+++|+++++++.+++++++++.++++++++++.++++.||+|||||||+|+++++||||+.++||++|++||++|
T Consensus 322 ~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~pNVD~~sg~l~~~lGip~~~~~t~lFavsR~~G 401 (427)
T TIGR01793 322 KTDPRYICQREFALKHLPDDPLFKLVSNLYKIVPGILTELGKVKNPWPNVDAHSGVLLQYYGLTEARYYTVLFGVSRALG 401 (427)
T ss_pred CCCCCcHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHcCCCchhhhhhHhhhhccch
Confidence 99999999999999998899999999999999999999999999999999999999999999985589999999999999
Q ss_pred HHHHHHHHHHcCCCcccCcccchHHH
Q 013306 412 ICSQLIWDRALGLPLERPKSVTLDWI 437 (445)
Q Consensus 412 wlAH~ieq~~~~~pI~RP~s~~~~~~ 437 (445)
|+||++||++.+.||+||+|+|++++
T Consensus 402 w~AH~ieq~~~~~~I~RP~s~~~~~~ 427 (427)
T TIGR01793 402 ILSQLIWDRALGLPLERPKSVSTEWL 427 (427)
T ss_pred HHHHHHHHHHcCCCccCCcccccccC
Confidence 99999999999999999999999874
No 2
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
Probab=100.00 E-value=8.8e-115 Score=898.00 Aligned_cols=400 Identities=67% Similarity=1.144 Sum_probs=376.5
Q ss_pred HHHHHHhhChhhHHHHHHHHHhhCCccccceeecccccCccCcceeeeecceecCCCCeeecCCCHHHHhhhCCCCCCCC
Q 013306 40 LHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDG 119 (445)
Q Consensus 40 lk~~~~~~ip~~~~~~k~l~~~~g~~~~g~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~ 119 (445)
|||++++.||.+++++++|+|+||+++||++|+|++++||||+++++|+||+||+++||+||||+|+||++++|++.+++
T Consensus 1 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~d~~~~Gl~g~~~~~t~iS~iDg~~Gl~YRGy~I~dLa~~~~~~~~~~ 80 (427)
T cd06105 1 LKDRLAELIPKEQARIKKFRKEHGKTVVGEVTVDMVYGGMRGIKGLVWETSVLDPEEGIRFRGLSIPECQKLLPKAPGGE 80 (427)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCcceeeeecCcccCCCCCceecceeceeEcCCCCeEECCccHHHHHhhCccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998766788
Q ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCcHHHHHHHHcCCCCCChHHHHHHHHHHhccCChhHHHHH------
Q 013306 120 EPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYE------ 193 (445)
Q Consensus 120 ~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~~~y~------ 193 (445)
++.||||+||||+|+|||++|+++|+++|.+++.+|++|.++|++||+++|||++|+++|++|+++|.|+.+|.
T Consensus 81 ~~~fEev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsaL~~~d~f~~~~~~~~~~~ 160 (427)
T cd06105 81 EPLPEGLFWLLLTGEVPTKEQVSALSKEWAARAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESKFAKAYAEGIHKS 160 (427)
T ss_pred ccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhcccchhhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999876643332
Q ss_pred --------hh---hhhhh-------hh-cCCc-ccCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCCchh
Q 013306 194 --------KG---IHKSK-------IY-KDGK-IIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAH 253 (445)
Q Consensus 194 --------~~---~~k~~-------~~-~~g~-~~~p~~~l~~a~Nfl~ml~~~~~~~~~~l~~~LiLhADHeg~N~STf 253 (445)
++ +++.+ ++ .+|. +++|++++||++||++||++.++..+++||++|||||||||+|+|||
T Consensus 161 ~~~~~~~~~~~~LiAk~p~i~A~~yr~~~~g~~~~~pd~~ls~a~Nfl~Ml~~~~~~~~~~l~~~lvLhADHeg~NaSTf 240 (427)
T cd06105 161 KYWEYVYEDSMDLIAKLPCVAAKIYRNLYRGGKIIAIDSNLDWSANFANMLGYTDPQFTELMRLYLTIHSDHEGGNVSAH 240 (427)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCcCHHHHHHHHhcCCCHHHHHHHHHHHhhhccccCccchHH
Confidence 22 34444 22 2355 89999999999999999998778999999999999999998899999
Q ss_pred hHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCC
Q 013306 254 TGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKT 333 (445)
Q Consensus 254 aarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~ 333 (445)
|+||||||++|+|+|++|||++|+||+||||||+|++||.++.+++|.+++++++++||++.+++|++||||||||||..
T Consensus 241 aarvvaSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~~g~~~~~~~v~~~i~~~l~~g~~i~GFGHrvyk~~ 320 (427)
T cd06105 241 TTHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTKLQKEVGKDVSDEQLREYVWKTLNSGRVVPGYGHAVLRKT 320 (427)
T ss_pred HHHHHhccCCCHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCcccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999988888777889999999999999999999999999999
Q ss_pred CccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHH
Q 013306 334 DPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGIC 413 (445)
Q Consensus 334 DPRa~~L~~~a~~~~~~~~~~~la~~le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~Gwl 413 (445)
|||+++|++++.++.++++++++++++++++++++.++++.|++|||||||+|+++++||||+.++||++|++||++||+
T Consensus 321 DPRa~~lk~~~~~~~~~~~~~~~~~~ie~~a~~~l~~~~~~~~l~pNVDfysg~l~~~lGip~~~~ft~lFa~sR~~GW~ 400 (427)
T cd06105 321 DPRYTCQREFALKHLPNDPLFKLVSQLYKIVPPVLTEQGKAKNPWPNVDAHSGVLLQYYGLTEMNYYTVLFGVSRALGVL 400 (427)
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHcCCCchhhhHHHHHHHHHHHHH
Confidence 99999999999999889999999999999999999999999999999999999999999999558999999999999999
Q ss_pred HHHHHHHHcCCCcccCcccchHHHHH
Q 013306 414 SQLIWDRALGLPLERPKSVTLDWIEK 439 (445)
Q Consensus 414 AH~ieq~~~~~pI~RP~s~~~~~~~~ 439 (445)
||++||++.+.||+||+|+|++++++
T Consensus 401 AH~~Eq~~~~~~I~RP~s~~~~~~~~ 426 (427)
T cd06105 401 SQLIWDRALGLPLERPKSVSTDGLEK 426 (427)
T ss_pred HHHHHHHhCCCCccCCcchhHHHHhh
Confidence 99999999888999999999999986
No 3
>KOG2617 consensus Citrate synthase [Energy production and conversion]
Probab=100.00 E-value=1e-112 Score=850.05 Aligned_cols=404 Identities=62% Similarity=1.043 Sum_probs=389.9
Q ss_pred cchhHHHHHHhhChhhHHHHHHHHHhhCCccccceeecccccCccCcceeeeecceecCCCCeeecCCCHHHHhhhCCCC
Q 013306 36 ADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAA 115 (445)
Q Consensus 36 ~~~~lk~~~~~~ip~~~~~~k~l~~~~g~~~~g~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~ 115 (445)
+..+||+.|++.||++++++|+++++|| ++|+||++++++||||++.+.||+|++|+++||+|||++|+||+..+|++
T Consensus 23 ~~~~LK~~l~~~ip~~~~~~k~~~~ehG--~vg~v~i~~i~gGmrg~~~~~~e~s~Ld~~~gI~frg~~i~e~q~~lp~~ 100 (458)
T KOG2617|consen 23 SAATLKGNLAIVIPRTGDEYKKFVSEHG--TVGNVTLKKIYGGMRGKGLLLWETSVLDPEEGIRFRGGDIPECQKRLPPA 100 (458)
T ss_pred ccccHHHHHHhhChhhHHHhhhhHhhcC--cccceeHHHhhcccCCCCceeecCcccchhhCeeecCCCHHHHHhhCCCC
Confidence 3445999999999999999999999999 79999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCcHHHHHHHHcCCCCCChHHHHHHHHHHhccCChhHHHHHhh
Q 013306 116 KPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKG 195 (445)
Q Consensus 116 ~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~~~y~~~ 195 (445)
+++.||+||+++|||+||++||++|+++++.+|.+|+.||++|.++|+++|++.|||.||++++++|+.+|+|+++|.+|
T Consensus 101 ~~~~e~lpe~~~wLL~tG~vPt~~Q~~~~~~~~a~rs~vP~~v~~~idsmP~d~HPM~q~~~a~~al~~~s~fa~ay~~G 180 (458)
T KOG2617|consen 101 EEGAEPLPEELFWLLLTGNVPTQSQVAALSFELAQRSAVPQGVLDMIDSMPKDLHPMAQLAAAVLALKIFSPFAKAYLRG 180 (458)
T ss_pred ccCCcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccHHHHHHHHhCCcccchHHHHHHHHHhccccccchhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhh--------------------------hhcCCcccCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCC
Q 013306 196 IHKSK--------------------------IYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGN 249 (445)
Q Consensus 196 ~~k~~--------------------------~~~~g~~~~p~~~l~~a~Nfl~ml~~~~~~~~~~l~~~LiLhADHeg~N 249 (445)
+.|.+ .|++|.+. |++++||++||++|+|+.+++++++||+|+++|+||||+|
T Consensus 181 ~~k~~yw~~~~ed~l~Liak~p~iAa~iY~~~~~dg~~~-~~~~~dys~Nf~~mlg~~~~~f~~lmrly~~iHadHE~gn 259 (458)
T KOG2617|consen 181 IGKYKYWQYTYEDCLVLIAKLPTIAAAIYRNIYADGIPK-PDPNLDYSANFARMLGSRQPDFAQLMRLYVGIHADHEGGN 259 (458)
T ss_pred cchhhcccccHHHHHHHHHhccHHHHHHHHHHhcCCCCC-CCcccchhHhHHHHHccCChHHHHHHHHeeeeecccccCc
Confidence 87654 34556444 4999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCC
Q 013306 250 VSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGV 329 (445)
Q Consensus 250 ~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~v 329 (445)
+|+||.|+++|++ |||.|++||+++|+|||||+|||+|++||..++++||++.++|++++|+|.++++|++||||||+|
T Consensus 260 VsAh~~HLvGSal-dpyls~aa~~~GLaGPLHGlAnqEvl~~L~~~~~Eig~~~s~e~ikeyiw~~ln~~rvvpGyGHav 338 (458)
T KOG2617|consen 260 VSAHTGHLVGSAL-DPYLSFAAGMNGLAGPLHGLANQEVLRFLGKLIEEIGKDLSKENIKEYIWKTLNSGRVVPGYGHAV 338 (458)
T ss_pred HHHHhcccccccc-chhHHHHHhhcccccccccCchHHHHHHHHHhHHHhccccchhhhhHhhHHhhccccccccccccc
Confidence 9999999999999 999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhh
Q 013306 330 LRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRS 409 (445)
Q Consensus 330 yr~~DPRa~~L~~~a~~~~~~~~~~~la~~le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~ 409 (445)
||++|||+.++++||.+++++||+++++..++++++.++.|++|.||+|||||+|||++++++|+++..|||++|+|||+
T Consensus 339 lr~tDPR~~~~~efA~k~~~~d~l~~l~~~l~~~~p~vl~e~gk~knp~PNVD~~SGvll~~yGl~e~~fyTVLFgVsRa 418 (458)
T KOG2617|consen 339 LRKTDPRYKVQREFALKHLPDDPLFLLVSALYKIAPGVLTEHGKVKNPYPNVDAHSGVLLQYYGLPELFFYTVLFGVSRA 418 (458)
T ss_pred ccCCCchhhHHHHHHHhcCCCCcchhhhHHHHHhChHHHHHhcccCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999987777999999999
Q ss_pred hHHHHHHHHHHHcCCCcccCcccchHHHHHHhhh
Q 013306 410 LGICSQLIWDRALGLPLERPKSVTLDWIEKNCKK 443 (445)
Q Consensus 410 ~GwlAH~ieq~~~~~pI~RP~s~~~~~~~~~~~~ 443 (445)
+|.++|++|+|+.+.||+||+|++++++.++++.
T Consensus 419 ~Gvlsqliw~ralg~pieRPks~~t~~~~~~~~~ 452 (458)
T KOG2617|consen 419 LGVLSQLIWDRALGLPIERPKSVSTDWLHRFTNM 452 (458)
T ss_pred HHHHHHHHHHHHhCCcccCccccchHHHHHHHHH
Confidence 9999999999999999999999999999999874
No 4
>PRK09569 type I citrate synthase; Reviewed
Probab=100.00 E-value=1.3e-111 Score=876.53 Aligned_cols=404 Identities=52% Similarity=0.897 Sum_probs=374.6
Q ss_pred hHHHHHHhhChhhHHHHHHHHHhhCCccccceeecccccCccCcceeeeecceecCCCCeeecCCCHHHHhhhCCCCCCC
Q 013306 39 DLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPD 118 (445)
Q Consensus 39 ~lk~~~~~~ip~~~~~~k~l~~~~g~~~~g~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~ 118 (445)
+|||+++++||.+++++++|+|+||+++||++|+||+.+|||||++++|+||+||+++||+||||+|+||++++|+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~GL~gv~~~~t~IS~iDg~~Gl~YRGy~I~dL~~~~p~~~~~ 81 (437)
T PRK09569 2 QLKETLKQKIEEHRPRTTRLVKEFGSVVIDEVTIEQCIGGARDIRSLVTDISYLDPQEGIRFRGKTIPETFEALPKAPGS 81 (437)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCeeeeeeeHhhhcccccCCeecceeceeecCCCceeECCccHHHHHhhCcccccc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999988778
Q ss_pred CCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCcHHHHHHHHcCCCCCChHHHHHHHHHHhccCChhHHHHHh----
Q 013306 119 GEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEK---- 194 (445)
Q Consensus 119 ~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~~~y~~---- 194 (445)
++++||||+||||+|+|||++|+++|+++|.+++.+|++|.++|++||+++|||++|+++|++|+++|.|...|.+
T Consensus 82 ~~~~fEev~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~s~~~~~y~~~~~~ 161 (437)
T PRK09569 82 EYPTVESFWYFLLTGEVPTQEQVQEVVAEWKKRQNVPQYVIDAIRALPRDSHPMVMLSVGILAMQRESKFAKFYNEGKFN 161 (437)
T ss_pred CCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhccccchhhhhccccccc
Confidence 8889999999999999999999999999999999999999999999999999999999999999766655543322
Q ss_pred -----------h---hhhhh-------hhc-CC-cccCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCCc
Q 013306 195 -----------G---IHKSK-------IYK-DG-KIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS 251 (445)
Q Consensus 195 -----------~---~~k~~-------~~~-~g-~~~~p~~~l~~a~Nfl~ml~~~~~~~~~~l~~~LiLhADHeg~N~S 251 (445)
+ +++.+ +++ +| ++++|++++||++||++||+++ +..+++||++|||||||||+|+|
T Consensus 162 ~~~~~~~~~~~~~rliA~~p~i~A~~yr~~~~g~~~~~p~~~ls~a~NFl~Ml~~~-~~~~~~l~~~LiL~ADHe~~naS 240 (437)
T PRK09569 162 KMDAWEYMYEDASDLVARIPVIAAYIYNLKYKGDKQIPSDPELDYGANFAHMIGQP-KPYKDVARMYFILHSDHESGNVS 240 (437)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHhcCC-chHHHHHHHHHhhhhccCCCcch
Confidence 2 34443 223 34 4899999999999999999986 55679999999999999978999
Q ss_pred hhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhCCCcccccCCCCC
Q 013306 252 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECG-ENVTTEQLKDYVWKTLNSGKVVPGFGHGVL 330 (445)
Q Consensus 252 TfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig-~~~~~~~~~~~v~~~l~~g~~IpGfGH~vy 330 (445)
|||+|+++||++|+|+|++|||++|+||+||||||+|++||+++.+++| ...+++++++||++.+++|++|||||||||
T Consensus 241 TfaaRvvaSt~ad~ysav~Agi~aL~GplHGGA~e~v~~~l~~i~~~~~~~~~~~~~~~~~v~~~l~~~~ri~GFGHrvy 320 (437)
T PRK09569 241 AHTTHLVASALSDAYYSYSAGLNGLAGPLHGLANQEVLGWIQQFQEKLGGEEPTKEQVEQALWDTLNAGQVIPGYGHAVL 320 (437)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCcccCCCCCCC
Confidence 9999999999999999999999999999999999999999999987774 334679999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhh
Q 013306 331 RKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSL 410 (445)
Q Consensus 331 r~~DPRa~~L~~~a~~~~~~~~~~~la~~le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~ 410 (445)
|..|||+++|+++++++.++++++++++++++++++++.++++.|+++||||||+|++++.||||+.++||++|++||++
T Consensus 321 k~~DPRa~~L~~~a~~~~~~~~~~~ia~~~e~v~~~~~~~~~~~~~l~pNVD~~sg~l~~~lGip~~~~~t~lFaisR~~ 400 (437)
T PRK09569 321 RKTDPRYTAQREFCLKHLPDDPLFKLVAMIFEVAPGVLTEHGKTKNPWPNVDAQSGVIQWYYGVKEWDFYTVLFGVGRAL 400 (437)
T ss_pred CCCCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHHHHHcCCCchhhhHHHHHHHHHH
Confidence 99999999999999999888999999999999999988899999999999999999999999999449999999999999
Q ss_pred HHHHHHHHHHHcCCCcccCcccchHHHHHHhhh
Q 013306 411 GICSQLIWDRALGLPLERPKSVTLDWIEKNCKK 443 (445)
Q Consensus 411 GwlAH~ieq~~~~~pI~RP~s~~~~~~~~~~~~ 443 (445)
||+||++||+..+.||+||++.|+|++++.|++
T Consensus 401 Gw~AH~iEq~~~~~~i~RP~~~Y~G~~~~~~~~ 433 (437)
T PRK09569 401 GVMANITWDRGLGYAIERPKSVTTEMLEKWAAE 433 (437)
T ss_pred HHHHHHHHHHhCCCCccCCccccchHHHHHHhh
Confidence 999999999987878999999999999999964
No 5
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like. 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxaloacetate (OAA) to form 2-methylcitrate and CoA. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with OAA to form citrate and CoA, the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the a
Probab=100.00 E-value=2.5e-111 Score=872.46 Aligned_cols=398 Identities=56% Similarity=0.972 Sum_probs=364.3
Q ss_pred HHHHHHhhChhhHHHHHHHHHhhCCccccceeecccccCccCcceeeeecceecCCCCeeecCCCHHHHhhhCCCCCCCC
Q 013306 40 LHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDG 119 (445)
Q Consensus 40 lk~~~~~~ip~~~~~~k~l~~~~g~~~~g~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~ 119 (445)
|||+++++||.+++++++|+++||+++||++|++++++|||||++++|+||+||+++|++||||+|+||++++|+..++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~~~~~GL~gv~~~~t~is~idg~~Gl~YRGy~I~dLa~~~~~~~~~~ 80 (428)
T cd06106 1 LKEALKEVIPAKREQLKKLKAEYGETVVGDVKVSNVLGGMRGLKSMLWEGSVLDAEEGIRFHGKTIPECQKELPKAPIGG 80 (428)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCCeeeeeeHHHhcccccCCeeeeecCeEECCCCCeeECCCcHHHHHhhCccccccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998764444
Q ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCcHHHHHHHHcCCCCCChHHHHHHHHHHhccCChhHHHH-------
Q 013306 120 EPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY------- 192 (445)
Q Consensus 120 ~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~~~y------- 192 (445)
++.|||++||||+|+|||++|+++|+++|.+++.+|+.|.++|++||+++|||++|+++|++|+.++.|..+|
T Consensus 81 ~f~~Eev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~L~~~~~~~~~y~~~~~~~ 160 (428)
T cd06106 81 EMLPESMLWLLLTGKVPTFEQARGLSKELAERGKLPHYIEKLLDSLPKTLHPMTQLSIGVAALNHDSKFAAAYEKGIKKT 160 (428)
T ss_pred CccHHHHHHHHHcCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhccccchhhhhcccCcccc
Confidence 4455999999999999999999999999999999999999999999999999999999999999755433222
Q ss_pred -------Hhh---hhhhh-------hhcCC--c-ccCCCCCCCHHHHHHHHhCC-CChHHHHHHHHHHHHhccCCCCCCc
Q 013306 193 -------EKG---IHKSK-------IYKDG--K-IIPKDDSLDYGGNFSHMLGF-DDPKMLELMRLYVTIHSDHEGGNVS 251 (445)
Q Consensus 193 -------~~~---~~k~~-------~~~~g--~-~~~p~~~l~~a~Nfl~ml~~-~~~~~~~~l~~~LiLhADHeg~N~S 251 (445)
+++ +++.+ +++.| . +++|++++||++|||+|||. +++.++++||++|||||||||+|+|
T Consensus 161 ~~~~~~~~~~~rLiAk~ptI~A~~yr~~~g~~~~~~~p~~~ls~a~NFL~Mlg~~p~~~~~~~l~~~LiL~ADHeg~NaS 240 (428)
T cd06106 161 EYWEPTLEDSLNLIARLPALAARIYRNVYGEGHGLGKIDPEVDWSYNFTSMLGYGDNLDFVDLLRLYIALHGDHEGGNVS 240 (428)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHhhhcccCCccch
Confidence 222 34544 23444 3 56799999999999999975 6788999999999999999988999
Q ss_pred hhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCC
Q 013306 252 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLR 331 (445)
Q Consensus 252 TfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr 331 (445)
|||+||||||++|+|+|++|||++|+||+|||||++|++||.++.+++|...+++++++||++.+++|++||||||||||
T Consensus 241 TfaarvvaST~ad~ysav~agi~aL~GPlHGGAne~v~~~l~e~~~~ig~~~~~~~~~~~i~~~l~~g~~i~GfGHrvYk 320 (428)
T cd06106 241 AHTTHLVGSALSDPYLSYSAGLMGLAGPLHGLAAQEVLRWILEMQKNIGSKATDQDIRDYLWKTLKSGRVVPGYGHAVLR 320 (428)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHhcCCCcccChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999888886546799999999999999999999999999
Q ss_pred CCCccHHHHHHHHHhhC--CCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhh
Q 013306 332 KTDPRYTCQREFALKHL--PDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRS 409 (445)
Q Consensus 332 ~~DPRa~~L~~~a~~~~--~~~~~~~la~~le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~ 409 (445)
..|||+++|+++++++. ..++++++++++|+++++++.++++.|++|||||||+|+++++||||+.++||++|++||+
T Consensus 321 ~~DPRa~~l~~~~~~l~~~~~~~~~~~a~~ie~~~~~~l~~~~~~~~l~pNVDfysg~v~~~lGip~~~~ft~lFaisR~ 400 (428)
T cd06106 321 KPDPRFTALMEFAQTRPELENDPVVQLVQKLSEIAPGVLTEHGKTKNPFPNVDAASGVLFYHYGIREFLYYTVIFGVSRA 400 (428)
T ss_pred CCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHcCCChhhcchHHHHHHHH
Confidence 99999999999999874 3579999999999999988888888899999999999999999999965689999999999
Q ss_pred hHHHHHHHHHHHcCCCcccCcccchHHH
Q 013306 410 LGICSQLIWDRALGLPLERPKSVTLDWI 437 (445)
Q Consensus 410 ~GwlAH~ieq~~~~~pI~RP~s~~~~~~ 437 (445)
+||+||++||++.+.||+||+|+|++++
T Consensus 401 ~GW~AHi~eq~~~~~~I~RP~s~~~~~~ 428 (428)
T cd06106 401 LGPLTQLVWDRILGLPIERPKSLSLEGL 428 (428)
T ss_pred HHHHHHHHHHHhCCCCCcCCCccccccC
Confidence 9999999999988889999999999874
No 6
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homo
Probab=100.00 E-value=1.9e-108 Score=851.38 Aligned_cols=398 Identities=64% Similarity=1.114 Sum_probs=368.4
Q ss_pred HHHHHHhhChhhHHHHHHHHHhhCCccccceeecccccCccCcceeeeecceecCCCCeeecCCCHHHHhhhCCCCCCCC
Q 013306 40 LHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDG 119 (445)
Q Consensus 40 lk~~~~~~ip~~~~~~k~l~~~~g~~~~g~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~ 119 (445)
|||+++++||.++++++.|+++||+++++++|++++.+||||+++++|+||+||+++|++||||+|+||++++|+++.+.
T Consensus 1 l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~gv~~~~t~Is~iDg~~Gl~YRGy~I~dLa~~~~~~~~~~ 80 (426)
T cd06103 1 LKDKLAELIPKKQARIKELRKKYGNTKLGQITVDQVIGGMRGMKGLVYETSVLDPDEGIRFRGKTIPECQELLPKADGGG 80 (426)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCccccccchhhhccCcCCCeeeeeeCeeEcCCCCeEECCccHHHHHhhCccccccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999988765554
Q ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCcHHHHHHHHcCCCCCChHHHHHHHHHHhccCChhHHHH-------
Q 013306 120 EPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY------- 192 (445)
Q Consensus 120 ~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~~~y------- 192 (445)
+++||||+||||+|+|||++|+++|+++|.+++.+|+.|.++|+++|+++|||++|+++|++|++++.|+..|
T Consensus 81 ~~~fEev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~ 160 (426)
T cd06103 81 EPLPEGLFWLLLTGEVPTEEQVDELSKEWAKRAEVPSHVVKMIDNLPRNLHPMTQLSAAILALQSESKFAKAYAEGKINK 160 (426)
T ss_pred cCcHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCChHHHHHHHHHhccccccchhhcccccccc
Confidence 5569999999999999999999999999999999999999999999999999999999999999866543322
Q ss_pred --------Hhh---hhhhh-------hhc--CCc-ccCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCCc
Q 013306 193 --------EKG---IHKSK-------IYK--DGK-IIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS 251 (445)
Q Consensus 193 --------~~~---~~k~~-------~~~--~g~-~~~p~~~l~~a~Nfl~ml~~~~~~~~~~l~~~LiLhADHeg~N~S 251 (445)
.++ +++.+ +++ +|+ +++|++++||++||++||+++++..+++||++|||||||||+|+|
T Consensus 161 ~~~~~~~~~~a~~liA~~p~I~A~~yr~~~~~g~~~~~p~~~ls~aeNfl~ml~~~~~~~~~~l~~~LiL~ADHe~~NaS 240 (426)
T cd06103 161 TTYWEYVYEDAMDLIAKLPVVAAKIYRRKYRKGGEIGAIDSKLDWSANFAHMLGYEDEEFTDLMRLYLTLHSDHEGGNVS 240 (426)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCcCHHHHHHHHhCCCCHHHHHHHHHHHhhhhccCCccch
Confidence 222 34444 222 465 889999999999999999886688899999999999999978999
Q ss_pred hhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCC
Q 013306 252 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLR 331 (445)
Q Consensus 252 TfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr 331 (445)
|||+|+||||++|+|+|++|||++|+||+|||||+.|++||+++.+++|.+.+++++++||++.+++|++||||||||||
T Consensus 241 TfaaRvvaSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~ig~~~~~~~~~~~v~~~l~~~~~i~GfGHrvYk 320 (426)
T cd06103 241 AHTSHLVGSALSDPYLSFSAALNGLAGPLHGLANQEVLKWLLKMQKELGKDVSDEELEKYIWDTLNSGRVVPGYGHAVLR 320 (426)
T ss_pred HHHHHHHhccCCCHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCcccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999888886667899999999999999999999999999
Q ss_pred CCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhH
Q 013306 332 KTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLG 411 (445)
Q Consensus 332 ~~DPRa~~L~~~a~~~~~~~~~~~la~~le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~G 411 (445)
..|||+++|+++++++...++++++++++++++.+++.++++.|+++||||||+|++++.||||+.++||++|++||++|
T Consensus 321 ~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~~~~~~~~k~l~pNVDfysa~v~~~lGip~~~~ft~lFa~sR~~G 400 (426)
T cd06103 321 KTDPRFTCQREFALKHLPDDPLFKLVAQCYKIIPGVLKEHGKVKNPYPNVDAHSGVLLQHYGMTEPQYYTVLFGVSRALG 400 (426)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcccCCCCCChHhHHHHHHHHcCCChhhhhhHHHhHhhcch
Confidence 99999999999999998888999999999999998888888889999999999999999999995489999999999999
Q ss_pred HHHHHHHHHHcCCCcccCcccchHHH
Q 013306 412 ICSQLIWDRALGLPLERPKSVTLDWI 437 (445)
Q Consensus 412 wlAH~ieq~~~~~pI~RP~s~~~~~~ 437 (445)
|+||++||++.|.+|+||+|+|++.+
T Consensus 401 w~AH~~Eq~~~~~~i~RP~s~~~~~~ 426 (426)
T cd06103 401 VLAQLVWSRALGLPIERPKSMSTEGL 426 (426)
T ss_pred HHHHHHHHHhCCCCCCCCCccccccC
Confidence 99999999999989999999999753
No 7
>PLN02456 citrate synthase
Probab=100.00 E-value=1.4e-99 Score=790.72 Aligned_cols=380 Identities=47% Similarity=0.669 Sum_probs=346.9
Q ss_pred cchhHHHHHHhhChhhHHHHHHHHHhhCCccccceeecccccCccCcceeeeecceecCCCCe-eecCCCHHHHhhhCCC
Q 013306 36 ADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPA 114 (445)
Q Consensus 36 ~~~~lk~~~~~~ip~~~~~~k~l~~~~g~~~~g~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~ 114 (445)
+.++++..+.+.+|+++..+++|++ |++.+|.+|+| +||+|+.+++|+||+||+++|+ +||||+|+||++++
T Consensus 30 ~g~~~~~~i~~~~~~~~~~~~~l~~--~~~~~g~~~~d---~Gl~~~~~~~s~IS~iDg~~G~L~YRGy~I~dLa~~~-- 102 (455)
T PLN02456 30 TGKDYESPLSELGPVQAERLKKIKA--GKDDLGLKTVD---PGYRNTAPVLSEISLIDGDEGILRFRGYPIEELAEKS-- 102 (455)
T ss_pred CCcEEEEehhccCCcccchhhhccc--CcCccCCEecC---cccCCceeeeeeceEEeCCCCEEEECCccHHHHHhcC--
Confidence 4567888888888999999999988 88999999998 7999999999999999999996 99999999999986
Q ss_pred CCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCcHHHHHHHHcCCCCCChHHHHHHHHHHhccCChhHHHHHh
Q 013306 115 AKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEK 194 (445)
Q Consensus 115 ~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~~~y~~ 194 (445)
+||||+||||+|+|||++|+++|+++|.+++.+|++|.++|++||+++|||++|+++|++|++++++...|.+
T Consensus 103 -------~feevayLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsal~~~~~~~~~~~~ 175 (455)
T PLN02456 103 -------PFEEVAYLLLYGNLPTKEQLADWEAELRQHSAVPEHVLDVIDALPHDAHPMTQLVSGVMALSTFSPDANAYLR 175 (455)
T ss_pred -------CHHHHHHHHHcCcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHhCCCcCCcHHHHHHHHHhhhhcCcchhhhhc
Confidence 4999999999999999999999999999999999999999999999999999999999999999877654322
Q ss_pred h-----------------hhhhh-------hhcCCc-ccCCCCCCCHHHHHHHHhCC-------CChHHHHHHHHHHHHh
Q 013306 195 G-----------------IHKSK-------IYKDGK-IIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIH 242 (445)
Q Consensus 195 ~-----------------~~k~~-------~~~~g~-~~~p~~~l~~a~Nfl~ml~~-------~~~~~~~~l~~~LiLh 242 (445)
| +++.+ +++.|. ++.|++++||++||++||++ +++..+++||++||||
T Consensus 176 g~~~~~~~~~~~~~a~rliAk~p~iaA~~yr~~~g~~~~~P~~~ls~a~Nfl~Ml~~~~~~~~~p~~~~~~~l~~~LiLh 255 (455)
T PLN02456 176 GQHKYKSWEVRDEDIVRLIGKLPTLAAAIYRRMYGRGPVIPDNSLDYAENFLYMLGSLGDRSYKPDPRLARLLDLYFIIH 255 (455)
T ss_pred ccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHeee
Confidence 2 33443 234566 77899999999999999987 6889999999999999
Q ss_pred ccCCCCCCchhhHHHhh-ccCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCc
Q 013306 243 SDHEGGNVSAHTGHLVA-SALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKV 321 (445)
Q Consensus 243 ADHeg~N~STfaarvva-St~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~ 321 (445)
|||| +|+|||++|+++ ||++|+|+|++|||++|+||+||||||+|++||.++ | +++++++||++.+++|++
T Consensus 256 ADHe-~n~ST~aar~~a~St~ad~ysavaAgi~aL~GPlHGGA~e~v~~~l~ei----~---~~~~v~~~v~~~l~~~~~ 327 (455)
T PLN02456 256 ADHE-GGCSTAAARHLVGSSGVDPYTSVAAGVNALAGPLHGGANEAVLKMLKEI----G---TVENIPEYVEGVKNSKKV 327 (455)
T ss_pred ccCC-CCchhHHHHHHHhccCCCHHHHHHHHhhhcCCCcccChHHHHHHHHHHh----C---CHHHHHHHHHHHHhCCCc
Confidence 9999 999999999999 999999999999999999999999999999999986 5 578999999999999999
Q ss_pred ccccCCCCCCCCCccHHHHHHHHHhh---CCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccc
Q 013306 322 VPGFGHGVLRKTDPRYTCQREFALKH---LPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEAR 398 (445)
Q Consensus 322 IpGfGH~vyr~~DPRa~~L~~~a~~~---~~~~~~~~la~~le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~ 398 (445)
||||||||||+.|||+++|+++|+++ .+++++++++.++|+++. .+++++.|++|||||||+|+++++||||+ +
T Consensus 328 l~GFGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~ia~~le~~~~--~~~~~~~r~l~pNVDfysg~l~~~lGip~-~ 404 (455)
T PLN02456 328 LPGFGHRVYKNYDPRAKCIREFALEVFKHVGDDPLFKVASALEEVAL--LDEYFKVRKLYPNVDFYSGVLLRALGFPE-E 404 (455)
T ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--HHHhcCCCCCCcCcHHHHHHHHHHcCcCh-h
Confidence 99999999999999999999999966 467999999999999873 37788999999999999999999999995 9
Q ss_pred hhhHHHhhhhhhHHHHHHHHHHHcC-CCcccCcccchHHHHHH
Q 013306 399 YYTVLFGVSRSLGICSQLIWDRALG-LPLERPKSVTLDWIEKN 440 (445)
Q Consensus 399 ~~t~lF~vsR~~GwlAH~ieq~~~~-~pI~RP~s~~~~~~~~~ 440 (445)
+||++|++||++||+||++||...+ .+|+||+|+|+|...+.
T Consensus 405 ~~t~lFaisR~~Gw~AH~~E~~~~~~~ri~RP~~~Y~G~~~~~ 447 (455)
T PLN02456 405 FFTVLFAVSRAAGYLSQWDEALGLPDERIMRPKQVYTGEWLRH 447 (455)
T ss_pred hccchhhhhhHHHHHHHHHHHHhCCcccccCCCccccCCCccc
Confidence 9999999999999999999998763 47999999999885543
No 8
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=100.00 E-value=3e-95 Score=742.67 Aligned_cols=355 Identities=31% Similarity=0.445 Sum_probs=318.6
Q ss_pred cceeecccccCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHH
Q 013306 68 GNITVDMVIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSK 146 (445)
Q Consensus 68 g~~tv~~~~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~ 146 (445)
++++..++.+||+|+.+++|.||++|+++| ++||||+|+||+++. +|||++||||+|+|||.+|+++|.+
T Consensus 9 ~~~~~~~~~~Gl~~v~~~~t~is~id~~~g~L~yrGy~i~dla~~~---------~feev~~LLl~G~lPt~~el~~~~~ 79 (390)
T COG0372 9 SDVGRFTYDPGLEGVAACETAISYIDGDGGILRYRGYDIEDLAEKS---------SFEEVAYLLLYGELPTKAELAAFFA 79 (390)
T ss_pred CCccccccCCcccccceeeeeeeEecCCCceEEECCccHHHHHhhc---------CHHHHHHHHHcCcCCChHHHHHHHH
Confidence 677888889999999999999999999999 599999999999984 5999999999999999999999999
Q ss_pred HHHhhcCCcHHHHHHHHcCCCCCChHHHHHHHHHHhccCChh----HHHHH---hhhhhhh-------hhcCCc-ccCCC
Q 013306 147 ELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEF----QEAYE---KGIHKSK-------IYKDGK-IIPKD 211 (445)
Q Consensus 147 ~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~----~~~y~---~~~~k~~-------~~~~g~-~~~p~ 211 (445)
++..++.+|+++.+++..+|++.|||++|+++|++|+..+.. ...+. +-+++.+ ++..|+ ++.|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~p~~~hpm~~l~~~vs~l~~~~~~~~~~~~~~~~a~rlia~~pti~a~~yr~~~g~~~i~p~ 159 (390)
T COG0372 80 KLAARRTLPEQVIRLLESLPRDAHPMAVLRTAVSALSAFYPDKLDLNDRREAALRLIAKLPTIAAAVYRYSRGEPPIAPD 159 (390)
T ss_pred HHHHhcCccHHHHHHHHhCCCCcCcHHHHHHHHHHhccccccccccchhHHHHHHHHHHhhHHHHHHHHHhcCCCCccCC
Confidence 999999999999999999999999999999999888876421 11222 2245544 445666 77899
Q ss_pred CCCCHHHHHHHHhCC--CC-hHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHH
Q 013306 212 DSLDYGGNFSHMLGF--DD-PKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEV 288 (445)
Q Consensus 212 ~~l~~a~Nfl~ml~~--~~-~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v 288 (445)
++++|++|||+||.+ ++ +..+++||.+|||||||| +|+||||+||++||+||+|+|++|||++|+|||||||||+|
T Consensus 160 ~~~s~a~nfL~ml~g~~p~~~~~~~a~d~~LiL~ADHe-~NASTftarvvaST~sd~ys~i~agi~aL~GPlHGGAne~v 238 (390)
T COG0372 160 PDLSYAENFLYMLFGEPPSPPVEARAMDRALILHADHE-LNASTFTARVVASTGSDLYACIAAGIGALKGPLHGGANEAV 238 (390)
T ss_pred CCccHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHhcCCcHHHHHHHHHHHcCCCccCChHHHH
Confidence 999999999999987 45 589999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhhh
Q 013306 289 LLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVVP 365 (445)
Q Consensus 289 ~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~~~~~~la~~le~~~~ 365 (445)
++||+++ ++ ..+++++||++.|++|++||||||||||+.|||+++|+++++++. +++++++++.++|+++.
T Consensus 239 ~~ml~ei----~~--~~~~~~~~v~~~l~~~~~imGFGHRVYk~~DPRa~~lk~~a~~l~~~~g~~~~~~~a~~~e~~~l 312 (390)
T COG0372 239 MKMLEEI----GS--SGESAEAYVRKALDRKERIMGFGHRVYKNYDPRAKVLKELAEKLGKELGDLKLYEIAEELEEIAL 312 (390)
T ss_pred HHHHHHH----cc--cchhHHHHHHHHHhCCCCcCCCCCCCCCCCCchHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Confidence 9999987 42 233599999999999999999999999999999999999999984 44589999999999986
Q ss_pred hhHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchHHHHHHhh
Q 013306 366 PILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNCK 442 (445)
Q Consensus 366 ~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~~~~~~~ 442 (445)
+ ..++ .|++|||||||||++|+.||||. ++||+||++||++||+||++||+.++.+|+||++.|+|..++.+.
T Consensus 313 ~--~~~~-~k~l~PNvDfysg~v~~~lGiP~-~~fT~lFaiaR~~GW~AH~~Eq~~~~~riiRPr~~Y~G~~~r~~~ 385 (390)
T COG0372 313 E--DLGF-EKKLYPNVDFYSGIVYRALGIPT-DMFTPLFAIARTVGWIAHWIEQKEDGNKIIRPRALYTGPEERDYV 385 (390)
T ss_pred H--hhhc-ccCCCCccccchHHHHHHcCCCH-HhhhhhhhhhhHHHHHHHHHHHHhccCCccCChhhhcCccccccc
Confidence 5 2233 89999999999999999999996 899999999999999999999999955899999999998877543
No 9
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=100.00 E-value=1.6e-94 Score=744.99 Aligned_cols=360 Identities=26% Similarity=0.387 Sum_probs=321.9
Q ss_pred HHHHHHHhhCCccccceeecccccCccCcceeeeecceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHh
Q 013306 54 RLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLT 132 (445)
Q Consensus 54 ~~k~l~~~~g~~~~g~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~ 132 (445)
.|++|++.-+ ..|-.+++ .||+|+.+++|+||+||+++|+ +||||+|+||+++. +||||+||||+
T Consensus 9 d~~~~~~~~~--~~g~~~~~---~Gl~~~~~~~t~Is~iDg~~G~L~YRGy~I~dLa~~~---------~feEv~~LLl~ 74 (410)
T cd06115 9 DFKKIKAGKD--DKGLRLYD---PGYLNTAVVRSKISYIDGDKGILRYRGYPIEELAEKS---------TFLEVAYLLIY 74 (410)
T ss_pred eHHHhcCCcc--cCCCcccC---CccCCceEEEeeCeeEeCCCCeEEECCccHHHHHhcC---------CHHHHHHHHHc
Confidence 3677777322 35677765 5999999999999999999995 99999999999986 49999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcHHHHHHHHcCCCCCChHHHHHHHHHHhccCChhH--------------HHHHh---h
Q 013306 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQ--------------EAYEK---G 195 (445)
Q Consensus 133 G~lPt~~e~~~f~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~--------------~~y~~---~ 195 (445)
|+|||++|+++|+++|.+++.+|+.++++|++||+++|||++|+++|++|+++++.. ..+.. -
T Consensus 75 G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~rl 154 (410)
T cd06115 75 GNLPTKSQLSDWEFAVSQHTAVPTGVLDMIKSFPHDAHPMGMLVSAISALSAFHPEANPALAGQDIYKNKQVRDKQIVRI 154 (410)
T ss_pred CCCcCHHHHHHHHHHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCccccccccccccccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999865311 11222 2
Q ss_pred hhhhh-------hhcCCc-ccCCCCCCCHHHHHHHHhCC-------CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhc
Q 013306 196 IHKSK-------IYKDGK-IIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVAS 260 (445)
Q Consensus 196 ~~k~~-------~~~~g~-~~~p~~~l~~a~Nfl~ml~~-------~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaS 260 (445)
+++.+ +++.|+ +++|++++||++|||+||++ +++..+++||.+|||||||| +|+||||+|+++|
T Consensus 155 iA~~p~i~A~~~r~~~g~~~~~p~~~ls~a~NFl~Ml~g~~~~~~~p~~~~~~~l~~~liL~ADH~-~naSTfaarv~aS 233 (410)
T cd06115 155 LGKAPTIAAAAYRRRAGRPPNLPSQDLSYTENFLYMLDSLGERKYKPNPRLARALDILFILHAEHE-MNCSTAAVRHLAS 233 (410)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCCCCCCCHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHhhccC-CCchHHHHHHHHh
Confidence 45554 345676 88999999999999999985 46788999999999999998 9999999999999
Q ss_pred cCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHH
Q 013306 261 ALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQ 340 (445)
Q Consensus 261 t~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L 340 (445)
|++|+|+|++|||++|+||+||||||+|++||+++ + +++++++||++.+++|++||||||||||..|||+++|
T Consensus 234 t~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei----~---~~~~~~~~v~~~~~~~~ri~GFGHrvYk~~DPRa~~L 306 (410)
T cd06115 234 SGVDVYTAVAGAVGALYGPLHGGANEAVLRMLAEI----G---TVENIPAFIEGVKNRKRKLSGFGHRVYKNYDPRAKII 306 (410)
T ss_pred cCCCHHHHHHHHHhhccCCcccchHHHHHHHHHHh----C---ChHHHHHHHHHHHhcCCcccCCCCCCCCCCCccHHHH
Confidence 99999999999999999999999999999999886 5 5689999999999999999999999999999999999
Q ss_pred HHHHHhhC---CCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHH
Q 013306 341 REFALKHL---PDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLI 417 (445)
Q Consensus 341 ~~~a~~~~---~~~~~~~la~~le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~i 417 (445)
+++++++. +++++++++.++|+++.+ .++++.|+++||||||+|+++++||||+ ++||++|++||++||+||++
T Consensus 307 ~~~~~~l~~~~~~~~~~~~a~~~e~~~~~--~~~~~~k~l~pNVD~ysa~l~~~lG~p~-~~~t~lFa~sR~~Gw~AH~~ 383 (410)
T cd06115 307 KKLADEVFEIVGKDPLIEIAVALEKAALS--DEYFVKRKLYPNVDFYSGLIYRAMGFPT-DFFPVLFAIPRMAGYLAHWR 383 (410)
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHHHh--hhhhcccCCCCChHHHHHHHHHHcCCCh-HhhhhHHHHHhhhhHHHHHH
Confidence 99999974 457999999999998865 5677789999999999999999999996 99999999999999999999
Q ss_pred HHHHcC-CCcccCcccchHHHH
Q 013306 418 WDRALG-LPLERPKSVTLDWIE 438 (445)
Q Consensus 418 eq~~~~-~pI~RP~s~~~~~~~ 438 (445)
||+..+ .+|+||++.|+|...
T Consensus 384 Eq~~~~~~~i~RP~~~Y~G~~~ 405 (410)
T cd06115 384 ESLDDPDTKIMRPQQLYTGVWL 405 (410)
T ss_pred HHHhCCCCcccCcccccCCCCC
Confidence 999874 579999999998643
No 10
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=100.00 E-value=1.4e-93 Score=726.48 Aligned_cols=338 Identities=24% Similarity=0.336 Sum_probs=312.6
Q ss_pred cCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCc
Q 013306 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (445)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp 155 (445)
+||+|+.+++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||++|+++|+++|.+++.+|
T Consensus 1 ~Gl~gv~~~~t~Is~idg~~G~L~YRGy~i~dL~~~~---------~feev~~LLl~G~lP~~~el~~f~~~l~~~~~lp 71 (349)
T cd06109 1 PGLEGVVAAETVLSDVDGEAGRLIIRGYSVEDLAGSA---------SFEDVAALLWNGFFPDLPELEEFRAALAAARALP 71 (349)
T ss_pred CCcCCceeeeeeceeEeCCCCeEEECCccHHHHHhhC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCC
Confidence 599999999999999999999 699999999999985 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhccCChhHHHHHhhhhhhh-------hhcCCc-ccCCCCCCCHHHHHHHHhCC-
Q 013306 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSK-------IYKDGK-IIPKDDSLDYGGNFSHMLGF- 226 (445)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~~~y~~~~~k~~-------~~~~g~-~~~p~~~l~~a~Nfl~ml~~- 226 (445)
+.|.++|++| ++.|||++|+++|++++.++....+. +-+++.+ +++.|+ ++.|++++||++||++||++
T Consensus 72 ~~v~~~~~~~-~~~~pm~~l~~~~s~~~~~~~~~~a~-~liA~~p~i~a~~~r~~~g~~~~~p~~~ls~a~nfl~ml~g~ 149 (349)
T cd06109 72 DVVAALLPAL-AGLDPMDALRALLALLPDSPDLATAL-RLLAAAPVITAALLRLSRGKQPIAPDPSLSHAADYLRMLTGE 149 (349)
T ss_pred HHHHHHHHhC-CCcCHHHHHHHHHHhcCchhHHHHHH-HHHHHHHHHHHHHHHHHcCCCCcCCCCCCCHHHHHHHHhCCC
Confidence 9999999999 99999999999999998763322222 2245544 345566 88999999999999999987
Q ss_pred -CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHhcCCCCCh
Q 013306 227 -DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTT 305 (445)
Q Consensus 227 -~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig~~~~~ 305 (445)
+++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+|||||++|++||+++ + ++
T Consensus 150 ~p~~~~~~~l~~~Lvl~ADHg-~n~ST~aaRv~aSt~ad~~savaagi~al~GplHGGA~e~v~~~l~ei----~---~~ 221 (349)
T cd06109 150 PPSEAHVRALDAYLVTVADHG-MNASTFTARVIASTEADLTSAVLGAIGALKGPLHGGAPGPVLDMLDAI----G---TP 221 (349)
T ss_pred CCChHHHHHHHHHHhHhcccC-CCchhhHHHHHhccCCcHHHHHHHHHHhccCCcccChHHHHHHHHHHh----C---Ch
Confidence 67888999999999999997 999999999999999999999999999999999999999999999886 4 46
Q ss_pred hhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhH
Q 013306 306 EQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHS 385 (445)
Q Consensus 306 ~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~~~~~~~~la~~le~~~~~~~~~~~k~k~l~pNVD~~s 385 (445)
+++++||++.+++|++||||||||||..|||+++|+++++++..+++++++++++|+++.+++.++++.|+++||||||+
T Consensus 222 ~~~~~~v~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~~~~~~~~r~l~pNvD~~s 301 (349)
T cd06109 222 ENAEAWLREALARGERLMGFGHRVYRVRDPRADVLKAAAERLGAPDERLEFAEAVEQAALALLREYKPGRPLETNVEFYT 301 (349)
T ss_pred hhHHHHHHHHHHcCCeecCCCCCCCCCCCcCHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhhH
Confidence 89999999999999999999999999999999999999999988899999999999999888888888899999999999
Q ss_pred HHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchH
Q 013306 386 GVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLD 435 (445)
Q Consensus 386 g~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~ 435 (445)
|+++++||||+ ++||++|++||++||+||++||+..+ +|+||++.|+|
T Consensus 302 g~l~~~lGip~-~~~t~lF~isR~~Gw~AH~~Eq~~~~-~~~RP~~~Y~G 349 (349)
T cd06109 302 ALLLEALGLPR-EAFTPTFAAGRTAGWTAHVLEQARTG-RLIRPQSRYVG 349 (349)
T ss_pred HHHHHHhCCCh-hhhhhHHHHHhHHHHHHHHHHHHhcC-CCcCCCcccCC
Confidence 99999999996 99999999999999999999999977 58899999985
No 11
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of ide
Probab=100.00 E-value=2.5e-93 Score=731.43 Aligned_cols=340 Identities=29% Similarity=0.446 Sum_probs=310.3
Q ss_pred ccCccCcceeeeecceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCC
Q 013306 76 IGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (445)
Q Consensus 76 ~~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~l 154 (445)
..||+||.+++|.||+||+++|+ +||||+|+||+++. +||||+||||+|+|||++|+++|+++|.+++.+
T Consensus 6 ~~GL~~v~~~~t~Is~iDg~~G~L~YRGy~I~dLa~~~---------~feev~yLLl~G~LPt~~el~~f~~~L~~~~~l 76 (382)
T cd06107 6 DPGYLNTAVCESSITYIDGDKGILLYRGYPIEQLAESS---------TYEEVAYLLLWGELPTQEQYDEFQRRLSEHMMV 76 (382)
T ss_pred CCCcCCeeeEeeeCeeEeCCCCeEEECCccHHHHHhcC---------CHHHHHHHHhCCCCCCHHHHHHHHHHHHHccCC
Confidence 46999999999999999999995 99999999999985 599999999999999999999999999999999
Q ss_pred cHHHHHHHHcCCCCCChHHHHHHHHHHhccCChh--------------HHHHHh---hhhhhh-------hhcCCc-ccC
Q 013306 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEF--------------QEAYEK---GIHKSK-------IYKDGK-IIP 209 (445)
Q Consensus 155 p~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~--------------~~~y~~---~~~k~~-------~~~~g~-~~~ 209 (445)
|++|.++|+.||++.|||++|+++|++|+++++. ...++. -+++.+ ++++|+ +++
T Consensus 77 p~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liA~~p~i~A~~yr~~~g~~~~~ 156 (382)
T cd06107 77 PESVHRLIQTFPRDAHPMGILCAGLSALSAFYPEAIPAHTGDLYQNNPEVRDKQIIRTLAKMPTIAAAAYCHRIGRPFVY 156 (382)
T ss_pred CHHHHHHHHhCCCCCCcHHHHHHHHHhhcccCccccchhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999986521 111222 245555 346776 899
Q ss_pred CCCCCCHHHHHHHHhCC-------CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhcccccccc
Q 013306 210 KDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHG 282 (445)
Q Consensus 210 p~~~l~~a~Nfl~ml~~-------~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHG 282 (445)
|++++||++|||+||++ ++++.+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+||
T Consensus 157 P~~~ls~a~NFL~Ml~g~~~~~~~p~~~~~~~l~~~LiL~aDHg-~n~ST~aaRv~aSt~ad~~s~v~aai~al~GplHG 235 (382)
T cd06107 157 PRANLSYIENFLYMMGYVDQEPYEPNPRLARALDRLWILHADHE-MNCSTSAARHTGSSLADPISCMAAAIAALYGPLHG 235 (382)
T ss_pred CCCCCCHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHhcccC-CcchhHHHHHHHhcCCcHHHHHHHHHhhccCCccc
Confidence 99999999999999985 46788999999999999998 99999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHH
Q 013306 283 LANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSK 359 (445)
Q Consensus 283 gA~~~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~~~~~~la~~ 359 (445)
|||++|++||+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +.+++++++++
T Consensus 236 GA~e~v~~~l~ei----~---~~~~~~~~v~~~~~~~~ri~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ 308 (382)
T cd06107 236 GANEAALKMLREI----G---TPENVPAFIERVKNGKRRLMGFGHRVYKNYDPRAKVIREILHEVLTEVEKDPLLKVAME 308 (382)
T ss_pred chHHHHHHHHHHh----C---ChHHHHHHHHHHHhcCCCcCCCCCCCCCCCCccHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 9999999999886 5 568999999999999999999999999999999999999999875 45899999999
Q ss_pred HHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcC-CCcccCcccchH
Q 013306 360 LFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALG-LPLERPKSVTLD 435 (445)
Q Consensus 360 le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~-~pI~RP~s~~~~ 435 (445)
+|+++.+ +++++.|+++||||||+|+++++||||+ ++||++|++||++||+||++||...+ .+|+||++.|+|
T Consensus 309 ie~~~~~--~~~~~~k~l~pNvD~~sa~~~~~lG~p~-~~~t~lf~~sR~~Gw~AH~~Eq~~~~~~~i~RP~~~Y~G 382 (382)
T cd06107 309 LERIALE--DEYFVSRKLYPNVDFYSGFIYKALGFPP-EFFTVLFAVARTSGWMAHWREMMEDPLQRIWRPRQVYTG 382 (382)
T ss_pred HHHHHHH--HhhhccCCCCcChHHHHHHHHHHcCCCh-hhhhHHHHHHHHHHHHHHHHHHHhCCCCceeCcccccCC
Confidence 9998765 5567789999999999999999999996 99999999999999999999999886 579999999986
No 12
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group is similar to gram-negative Escherichia coli (Ec) CS (type II, gltA) and Arabidopsis thaliana (Ath) peroxisomal (Per) CS. However EcCS and AthPerCS are not found in this group. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers w
Probab=100.00 E-value=4.5e-93 Score=729.96 Aligned_cols=344 Identities=27% Similarity=0.398 Sum_probs=311.9
Q ss_pred ccCccCcceeeeecceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCC
Q 013306 76 IGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (445)
Q Consensus 76 ~~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~l 154 (445)
..||+|+.+++|+||+||+++|+ +||||+|+||+++. +||||+||||+|+|||++|+++|+++|.+++.+
T Consensus 6 ~~Gl~~v~~~~t~Is~iDg~~G~L~YRGy~I~dL~~~~---------~feEv~yLLl~G~lPt~~el~~f~~~L~~~~~l 76 (384)
T cd06116 6 DPAYLNTASCKSAITYIDGEKGILRYRGYPIEQLAEQS---------SYLEVAYLLLHGELPTKERLAQWVYDITRHTMT 76 (384)
T ss_pred CCCcCCeeEEeeEeeeEeCCCCeEEECCccHHHHhccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCC
Confidence 36999999999999999999995 99999999999986 499999999999999999999999999999999
Q ss_pred cHHHHHHHHcCCCCCChHHHHHHHHHHhccCChhHHH-------HHh---hhhhhh-------hhcCCc-ccCCCCCCCH
Q 013306 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEA-------YEK---GIHKSK-------IYKDGK-IIPKDDSLDY 216 (445)
Q Consensus 155 p~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~~~-------y~~---~~~k~~-------~~~~g~-~~~p~~~l~~ 216 (445)
|++++++|++||+++|||++|+++|++|+++++.... ... -+++.+ +++.|+ +++|++++||
T Consensus 77 p~~v~~~l~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~~~~~~~~~~~~rliA~~p~i~A~~~r~~~g~~~~~p~~~ls~ 156 (384)
T cd06116 77 HENLKKFMDGFRYDAHPMGILISSVAALSTFYPEAKNIGDEEQRNKQIIRLIGKMPTIAAFAYRHRLGLPYVLPDNDLSY 156 (384)
T ss_pred CHHHHHHHHhcCcCCCcHHHHHHHHHhhhhcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCCH
Confidence 9999999999999999999999999999987643211 112 245554 345676 8999999999
Q ss_pred HHHHHHHhCC-------CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHH
Q 013306 217 GGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVL 289 (445)
Q Consensus 217 a~Nfl~ml~~-------~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~ 289 (445)
++|||+||++ ++++.+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+||||||+|+
T Consensus 157 a~Nfl~Ml~g~~~~~~~p~~~~~~~l~~~LiL~ADH~-~n~STfaarv~aSt~ad~ysav~agi~aL~GplHGGA~e~v~ 235 (384)
T cd06116 157 TGNFLSMLFKMTEPKYEPNPVLAKALDVLFILHADHE-QNCSTSAMRSVGSSRADPYTAVAAAVAALYGPLHGGANEAVL 235 (384)
T ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhccCC-CCchhHHHhhhhccCCCHHHHHHHHHHhccCCcccchHHHHH
Confidence 9999999985 46788999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhhhh
Q 013306 290 LWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVVPP 366 (445)
Q Consensus 290 ~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~~~~~~la~~le~~~~~ 366 (445)
+||+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +.+++++++.++|+++.+
T Consensus 236 ~~l~ei----~---~~~~~~~~v~~~~~~~~ri~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~ia~~~e~~~~~ 308 (384)
T cd06116 236 RMLQQI----G---SPKNIPDFIETVKQGKERLMGFGHRVYKNYDPRARIIKKIADEVFEATGRNPLLDIAVELEKIALE 308 (384)
T ss_pred HHHHHh----C---ChHHHHHHHHHHHhcCCcccCCCCCCCCCCChHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 999886 5 468899999999999999999999999999999999999999874 457899999999998765
Q ss_pred hHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcC-CCcccCcccchHHHHH
Q 013306 367 ILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALG-LPLERPKSVTLDWIEK 439 (445)
Q Consensus 367 ~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~-~pI~RP~s~~~~~~~~ 439 (445)
.++++.|+++||||||+|+++++||||+ ++||++|++||++||+||++||.+.+ .+|+||++.|+|...+
T Consensus 309 --~~~~~~k~l~pNvD~ysa~l~~~lGip~-~~~t~lf~isR~~Gw~AH~~Eq~~~~~~~i~RP~~~Y~G~~~~ 379 (384)
T cd06116 309 --DEYFISRKLYPNVDFYSGLIYQALGFPT-EAFTVLFAIPRTSGWLAQWIEMLRDPEQKIARPRQVYTGPRDR 379 (384)
T ss_pred --hhhhcccCCCCChHHHHHHHHHHhCCCh-hhccchhhhhhhchHHHHHHHHHhCcCCcccCccccccCCCCC
Confidence 5677789999999999999999999996 99999999999999999999999864 5799999999986543
No 13
>TIGR01798 cit_synth_I citrate synthase I (hexameric type). This model describes one of several distinct but closely homologous classes of citrate synthase, the protein that brings carbon (from acetyl-CoA) into the TCA cycle. This form, class I, is known to be hexameric and allosterically inhibited by NADH in Escherichia coli, Acinetobacter anitratum, Azotobacter vinelandii, Pseudomonas aeruginosa, etc. In most species with a class I citrate synthase, a dimeric class II isozyme is found. The class II enzyme may act primarily on propionyl-CoA to make 2-methylcitrate or be bifunctional, may be found among propionate utilization enzymes, and may be constitutive or induced by propionate. Some members of this model group as class I enzymes, and may be hexameric, but have shown regulatory properties more like class II enzymes.
Probab=100.00 E-value=2.2e-92 Score=729.45 Aligned_cols=355 Identities=27% Similarity=0.396 Sum_probs=314.7
Q ss_pred HHHHHHhhCCccccceeecccccCccCcceeeeecceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhC
Q 013306 55 LKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTG 133 (445)
Q Consensus 55 ~k~l~~~~g~~~~g~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G 133 (445)
+++++.+. |..++ ..||+|+.+++|+||+||+++|+ +||||+|+||+++. +|||++||||+|
T Consensus 20 ~~~~~~~~-----~~~~~---~~GL~~v~~~~s~Is~iDg~~G~L~YRGy~I~dL~~~~---------~feEv~yLLl~G 82 (412)
T TIGR01798 20 IRKLYKQT-----GLFTF---DPGFTSTASCESKITFIDGDKGILLYRGYPIDQLATKS---------DYLEVCYLLLNG 82 (412)
T ss_pred hHhhhhcC-----CCCcC---CCCCCCceeEeeeCeeEeCCCCEEEECCccHHHHhccC---------CHHHHHHHHHcC
Confidence 55565543 23333 46999999999999999999995 99999999999985 599999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcHHHHHHHHcCCCCCChHHHHHHHHHHhccCChh------HHH-HHh---hhhhhh---
Q 013306 134 KVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEF------QEA-YEK---GIHKSK--- 200 (445)
Q Consensus 134 ~lPt~~e~~~f~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~------~~~-y~~---~~~k~~--- 200 (445)
+|||++|+++|+++|.+++.+|+.|.++|++||++.|||++|+++|++|+.+++- ... ... -+++.+
T Consensus 83 ~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~ 162 (412)
T TIGR01798 83 ELPTAEQKDEFDDTVTRHTMVHEQVTRFFNGFRRDAHPMAVMVGVVGALSAFYHDSLDINDPRHREIAAIRLIAKIPTLA 162 (412)
T ss_pred CCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCCcCChHHHHHHHHHHHhhhCccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999976321 111 112 245555
Q ss_pred ----hhcCCc-ccCCCCCCCHHHHHHHHhCC-------CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHH
Q 013306 201 ----IYKDGK-IIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLS 268 (445)
Q Consensus 201 ----~~~~g~-~~~p~~~l~~a~Nfl~ml~~-------~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~a 268 (445)
++++|+ +++|++++||++||++||++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|
T Consensus 163 A~~yr~~~g~~~i~p~~~ls~a~Nfl~Ml~g~~~~~~~p~~~~~~~l~~~LiL~aDHg-~n~STfaaRv~aSt~ad~ysa 241 (412)
T TIGR01798 163 AMSYKYSIGQPFVYPRNDLSYAENFLHMMFATPCEDYKVNPVLARAMDRIFILHADHE-QNASTSTVRLAGSSGANPFAC 241 (412)
T ss_pred HHHHHHhCCCCCcCCCCCCCHHHHHHHHhcCCCCccCCCCHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCHHHH
Confidence 456777 89999999999999999985 46788999999999999998 999999999999999999999
Q ss_pred HHHHHhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC--CcccccCCCCCCCCCccHHHHHHHHHh
Q 013306 269 FAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSG--KVVPGFGHGVLRKTDPRYTCQREFALK 346 (445)
Q Consensus 269 vsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g--~~IpGfGH~vyr~~DPRa~~L~~~a~~ 346 (445)
++|||++|+||+|||||++|++||.++ + +++++++||++.++++ ++||||||||||..|||+++|++++++
T Consensus 242 v~agi~aL~GplHGGA~e~v~~ml~ei----~---~~~~~~~~v~~~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~a~~ 314 (412)
T TIGR01798 242 IAAGIAALWGPAHGGANEAALKMLEEI----G---SVKNIPEFIKKVKDKNDPFRLMGFGHRVYKNYDPRAKVMRETCHE 314 (412)
T ss_pred HHHHhhhccCccccchHHHHHHHHHHh----C---ChhHHHHHHHHHHhcCCCccccCCCCCCCCCCCccHHHHHHHHHH
Confidence 999999999999999999999999886 5 4689999999999887 599999999999999999999999987
Q ss_pred hC-----CCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHH
Q 013306 347 HL-----PDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRA 421 (445)
Q Consensus 347 ~~-----~~~~~~~la~~le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~ 421 (445)
+. ..++++++++++|+++.+ .++++.|+++||||||+|+++++||||+ ++||++|++||++||+||++||..
T Consensus 315 l~~~~g~~~~~~~~~a~~~e~~~~~--~~~~~~k~l~pNvD~~sa~l~~~lG~p~-~~~t~lFaisR~~Gw~AH~~Eq~~ 391 (412)
T TIGR01798 315 VLKELGLHDDPLFKLAMELEKIALN--DPYFIERKLYPNVDFYSGIILKAMGIPT-SMFTVIFALARTVGWISHWSEMIS 391 (412)
T ss_pred HHHHcCCCccHHHHHHHHHHHHHHh--hhhhccCCCCcChHHHHHHHHHHcCCCh-hhhhhHHHHHhhhhHHHHHHHHHh
Confidence 52 247899999999998765 4677789999999999999999999996 999999999999999999999998
Q ss_pred cC-CCcccCcccchHHH
Q 013306 422 LG-LPLERPKSVTLDWI 437 (445)
Q Consensus 422 ~~-~pI~RP~s~~~~~~ 437 (445)
.+ .+|+||++.|+|..
T Consensus 392 ~~~~~l~RP~~~Y~G~~ 408 (412)
T TIGR01798 392 DPGQKIGRPRQLYTGEE 408 (412)
T ss_pred CCCCcccCchhccCCCC
Confidence 64 57999999999864
No 14
>PRK05614 gltA type II citrate synthase; Reviewed
Probab=100.00 E-value=1.4e-91 Score=725.52 Aligned_cols=354 Identities=26% Similarity=0.413 Sum_probs=314.6
Q ss_pred HHHHHHhhCCccccceeecccccCccCcceeeeecceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhC
Q 013306 55 LKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTG 133 (445)
Q Consensus 55 ~k~l~~~~g~~~~g~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G 133 (445)
+++++++. |.+++| .||+|+.+++|+||+||+++|+ +||||+|+||+++. +||||+||||+|
T Consensus 33 ~~~~~~~~-----~~~~~~---~Gl~~~~~~~S~Is~iDg~~G~L~YRGy~i~dLa~~~---------~feEva~LLl~G 95 (419)
T PRK05614 33 IRKLYGST-----GYFTYD---PGFTSTASCESKITYIDGDKGILLYRGYPIEQLAEKS---------DFLEVCYLLLYG 95 (419)
T ss_pred hHhhhhcc-----CCcccC---CccCCceeeeeeceeEeCCCCEEEECCccHHHHHhcC---------CHHHHHHHHHcC
Confidence 66676653 344544 6999999999999999999995 99999999999985 599999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcHHHHHHHHcCCCCCChHHHHHHHHHHhccCCh-------hHHHHHhh---hhhhh---
Q 013306 134 KVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSE-------FQEAYEKG---IHKSK--- 200 (445)
Q Consensus 134 ~lPt~~e~~~f~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~-------~~~~y~~~---~~k~~--- 200 (445)
+|||++|+++|+++|.+++.+|+.+.++|+++|++.|||++|+++|++|++++. ......++ +++.+
T Consensus 96 ~LP~~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~~~~~~~~~~a~rlia~~p~i~ 175 (419)
T PRK05614 96 ELPTAEQKAEFDTTVTRHTMVHEQLKRFFRGFRRDAHPMAVLCGVVGALSAFYHDSLDINDPEHREIAAIRLIAKMPTLA 175 (419)
T ss_pred cCCCHHHHHHHHHhHhhccCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998642 11122222 45554
Q ss_pred ----hhcCCc-ccCCCCCCCHHHHHHHHhCC-------CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHH
Q 013306 201 ----IYKDGK-IIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLS 268 (445)
Q Consensus 201 ----~~~~g~-~~~p~~~l~~a~Nfl~ml~~-------~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~a 268 (445)
+++.|+ +++|++++||++||++|+.+ +++..+++||++|||||||| +|+||||+|+++||++|+|+|
T Consensus 176 A~~~r~~~g~~~~~p~~~ls~a~nfl~ml~g~~~~~~~~~~~~~~~ld~~LiL~ADH~-~n~STfa~RvvaSt~adlysa 254 (419)
T PRK05614 176 AMAYKYSIGQPFVYPRNDLSYAENFLRMMFATPCEEYEVNPVLVRALDRIFILHADHE-QNASTSTVRLAGSSGANPFAC 254 (419)
T ss_pred HHHHHHhCCCCCCCCCCccCHHHHHHHHHhCCCCccCCCCHHHHHHHHHHHhhhccCC-CCcchHHHhhhhccCCCHHHH
Confidence 345676 89999999999999999964 36778999999999999998 999999999999999999999
Q ss_pred HHHHHhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--CCCcccccCCCCCCCCCccHHHHHHHHHh
Q 013306 269 FAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLN--SGKVVPGFGHGVLRKTDPRYTCQREFALK 346 (445)
Q Consensus 269 vsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~--~g~~IpGfGH~vyr~~DPRa~~L~~~a~~ 346 (445)
++|||++|+||+||||||.|++||+++ + +++++++||+++++ +|++||||||||||..|||+++|++++++
T Consensus 255 v~agi~aL~GplHGGA~e~v~~~l~~i----~---~~~~~~~~i~~~~~~~~~~~i~GFGHrvyk~~DPRa~~l~~~a~~ 327 (419)
T PRK05614 255 IAAGIAALWGPAHGGANEAVLKMLEEI----G---SVDNIPEFIARAKDKNDGFRLMGFGHRVYKNYDPRAKIMRETCHE 327 (419)
T ss_pred HHHHHhhcCCCcccChHHHHHHHHHHh----C---CchhHHHHHHHHHhccCCccccCCCCCCCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999886 4 46899999999976 45699999999999999999999999986
Q ss_pred h---CC-CChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHc
Q 013306 347 H---LP-DDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRAL 422 (445)
Q Consensus 347 ~---~~-~~~~~~la~~le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~ 422 (445)
+ .+ +++++++++++|+++.+ +++++.|+++||||||+|+++++||||. ++||++|++||++||+||++||+..
T Consensus 328 l~~~~~~~~~~~~ia~~ie~~~~~--~~~~~~r~l~pNvD~~s~~l~~~lG~p~-~~~t~lFa~~R~~Gw~AH~~Eq~~~ 404 (419)
T PRK05614 328 VLKELGLNDPLLEVAMELEEIALN--DEYFIERKLYPNVDFYSGIILKALGIPT-SMFTVIFALARTVGWIAHWNEMHSD 404 (419)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHhh--hhhhccCCCCcChHHHHHHHHHHcCcCh-hhhcchHHhHhHHHHHHHHHHHHhc
Confidence 4 33 78999999999998866 6788889999999999999999999996 9999999999999999999999986
Q ss_pred -CCCcccCcccchHH
Q 013306 423 -GLPLERPKSVTLDW 436 (445)
Q Consensus 423 -~~pI~RP~s~~~~~ 436 (445)
+.+|+||+++|+|+
T Consensus 405 ~~~~iiRPr~~Y~G~ 419 (419)
T PRK05614 405 PEQKIGRPRQLYTGY 419 (419)
T ss_pred cCCcccCCCccccCC
Confidence 34799999999974
No 15
>PRK14036 citrate synthase; Provisional
Probab=100.00 E-value=2e-91 Score=716.78 Aligned_cols=343 Identities=27% Similarity=0.436 Sum_probs=312.3
Q ss_pred cccCccCcceeeeecceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC
Q 013306 75 VIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 153 (445)
Q Consensus 75 ~~~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~ 153 (445)
+..||+|+.+++|+||+||+++|+ +||||+|+||+++. +|||++||||+|++||++|++.|+.+|.+++.
T Consensus 4 ~~~Gl~gv~~~~t~Is~idg~~G~L~yRGy~i~dL~~~~---------~Feev~~LLl~G~lP~~~el~~f~~~L~~~~~ 74 (377)
T PRK14036 4 YRPGLEGVPATQSSISYVDGQKGILEYRGYPIEELAEKS---------SFLETAYLLIWGELPTAEELEEFEQEVRMHRR 74 (377)
T ss_pred CCCccCCCeeeeeeceEEECCCCEEEECCccHHHHHccC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Confidence 447999999999999999999996 89999999999986 59999999999999999999999999999999
Q ss_pred CcHHHHHHHHcCCCCCChHHHHHHHHHHhccCChh------HHHHHhh---hhhhh-------hhcCCc-ccCCCCCCCH
Q 013306 154 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEF------QEAYEKG---IHKSK-------IYKDGK-IIPKDDSLDY 216 (445)
Q Consensus 154 lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~------~~~y~~~---~~k~~-------~~~~g~-~~~p~~~l~~ 216 (445)
+|+.|.++|++||++.|||++|+++|++|+++++. ...++++ +++.+ ++++|+ +++|++++||
T Consensus 75 lp~~v~~~i~~~p~~~hpm~~L~~~vs~l~~~~~~~~~~~~~~~~~~~~rliA~~p~i~a~~~r~~~g~~~~~p~~~l~~ 154 (377)
T PRK14036 75 VKYRIRDMMKCFPETGHPMDALQASAAALGLFYSRRALDDPEYIRDAVVRLIAKIPTMVAAFQLIRKGNDPIQPRDDLDY 154 (377)
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhcCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Confidence 99999999999999999999999999999986531 1223332 44544 445666 8899999999
Q ss_pred HHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHH
Q 013306 217 GGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKS 294 (445)
Q Consensus 217 a~Nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~ 294 (445)
++||++||++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+||||||+|++||++
T Consensus 155 a~nfl~ml~g~~p~~~~~~~l~~~Lil~ADHg-~naST~aaRv~aSt~ad~ys~v~agi~aL~GplHGGA~e~v~~ml~~ 233 (377)
T PRK14036 155 AANFLYMLTEREPDPLAARIFDRCLILHAEHT-INASTFSARVTASTLTDPYAVIASAVGTLAGPLHGGANEDVLAMLEE 233 (377)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhhhccCC-CCchHHHHHHHHhcCCcHHHHHHHHHHHccCccccChHHHHHHHHHH
Confidence 9999999987 68899999999999999997 99999999999999999999999999999999999999999999987
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhhhhhHhhc
Q 013306 295 VVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVVPPILTKL 371 (445)
Q Consensus 295 i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~~~~~~la~~le~~~~~~~~~~ 371 (445)
+ + +++++++||++.+++|++||||||||||..|||+++|+++++++. ++++++++++++|+++.+.+
T Consensus 234 i----~---~~~~~~~~v~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~~~~~~~--- 303 (377)
T PRK14036 234 I----G---SVENVRPYLDERLANKQKIMGFGHREYKVKDPRATILQKLAEELFARFGHDEYYEIALELERVAEERL--- 303 (377)
T ss_pred h----C---ChhhHHHHHHHHHHCCCceecCCCCCCCCCCccHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh---
Confidence 6 5 568999999999999999999999999999999999999999863 57899999999999997643
Q ss_pred CCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchHHHHHH
Q 013306 372 GKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKN 440 (445)
Q Consensus 372 ~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~~~~~ 440 (445)
+.|+++||||||+|+++++||||+ ++||++|++||++||+||++||...+ +|+||++.|+|...+.
T Consensus 304 -~~k~l~pNvD~~sa~l~~~lGip~-~~~t~lf~~sR~~Gw~AH~~Eq~~~~-~l~RP~~~Y~G~~~~~ 369 (377)
T PRK14036 304 -GPKGIYPNVDFYSGLVYRKLGIPR-DLFTPIFAIARVAGWLAHWREQLGAN-RIFRPTQIYTGSHNRR 369 (377)
T ss_pred -ccCCCCcChHHHHHHHHHHcCCCh-hhhhhHHHHHhHHHHHHHHHHHHhcC-cccCCCceecCCCCCC
Confidence 468999999999999999999996 99999999999999999999999977 6999999999975443
No 16
>PRK12351 methylcitrate synthase; Provisional
Probab=100.00 E-value=2.2e-91 Score=715.65 Aligned_cols=338 Identities=25% Similarity=0.377 Sum_probs=306.2
Q ss_pred ccCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCC
Q 013306 76 IGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (445)
Q Consensus 76 ~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~l 154 (445)
..||+||.+.+|.||.+|+++| |+||||+|+||+++. +||||+||||+|+|||++|+++|+++|.+++.+
T Consensus 9 ~~GL~gv~~~~T~is~i~~~~g~L~YRGy~I~dLa~~~---------~feeva~LL~~G~LP~~~el~~f~~~L~~~~~l 79 (378)
T PRK12351 9 SVALSGVVAGNTALCTVGKSGNDLHYRGYDILDLAEHC---------EFEEVAHLLVHGKLPTQAELAAYKTKLKALRGL 79 (378)
T ss_pred CCCCCCeeeccccCeeEecCCCEEEECCccHHHHHhcC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCC
Confidence 3699999999999999999887 699999999999985 599999999999999999999999999999999
Q ss_pred cHHHHHHHHcCCCCCChHHHHHHHHHHhccCCh------hHHHHHhh---hhhhh-------hhcC-CcccC-CCCCCCH
Q 013306 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSE------FQEAYEKG---IHKSK-------IYKD-GKIIP-KDDSLDY 216 (445)
Q Consensus 155 p~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~------~~~~y~~~---~~k~~-------~~~~-g~~~~-p~~~l~~ 216 (445)
|++|.++|++||+++|||++|+++|++|+++++ +...++++ +++.+ +++. +.++. |++++||
T Consensus 80 p~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~d~~~~~~~~~~~~~~a~rliA~~p~i~a~~~r~~~~~~~~~p~~~~ls~ 159 (378)
T PRK12351 80 PAAVKTVLEAIPAAAHPMDVMRTGVSVLGCLLPEKEDHNFSGARDIADRLLASLGSILLYWYHYSHNGRRIEVETDDDSI 159 (378)
T ss_pred CHHHHHHHHhCCccCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCcCCH
Confidence 999999999999999999999999999998653 34455544 45555 2334 44555 4778999
Q ss_pred HHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHH
Q 013306 217 GGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKS 294 (445)
Q Consensus 217 a~Nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~ 294 (445)
++||++||++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||+|++||++
T Consensus 160 a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~-~naST~aaRvvaSt~ad~~sav~agi~aL~GplHGGA~e~v~~ml~~ 238 (378)
T PRK12351 160 GGHFLHLLHGKKPSESWVKAMHTSLILYAEHE-FNASTFTARVIAGTGSDMYSAITGAIGALRGPKHGGANEVAFEIQQR 238 (378)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccC-CchHHHHHHHHhccCCCHHHHHHHHHHhccCCccCchHHHHHHHHHH
Confidence 9999999976 78889999999999999998 99999999999999999999999999999999999999999999987
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhhhhhHhhc
Q 013306 295 VVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVVPPILTKL 371 (445)
Q Consensus 295 i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~~~~~~la~~le~~~~~~~~~~ 371 (445)
+ + +++++++||++.+++|++||||||||||..|||+++|+++++++. ++++++++++++|+++.+
T Consensus 239 i----~---~~~~~~~~v~~~l~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~~~~~----- 306 (378)
T PRK12351 239 Y----D---TPDEAEADIRRRVENKEVVIGFGHPVYTISDPRNKVIKEVAKKLSKEAGDTKLYDIAERLETVMWE----- 306 (378)
T ss_pred h----C---CHHHHHHHHHHHHhCCCccccCCCCCCCCCCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-----
Confidence 6 5 578999999999999999999999999999999999999999863 567999999999998854
Q ss_pred CCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchHHHHH
Q 013306 372 GKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEK 439 (445)
Q Consensus 372 ~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~~~~ 439 (445)
.|+++||||||+|+++++||||+ ++||++|++||++||+||++||++.+ +|+||++.|+|...+
T Consensus 307 --~k~l~pNvD~ysg~l~~~lG~p~-~~~t~lF~~sR~~Gw~AH~~Eq~~~~-~~iRP~~~Y~G~~~~ 370 (378)
T PRK12351 307 --EKKMFPNLDWFSAVSYHMMGVPT-AMFTPLFVISRTTGWAAHVIEQRQDN-KIIRPSANYTGPEDR 370 (378)
T ss_pred --HhCCCCChHHHHHHHHHHcCCCH-HhhhhHHHHHHHHHHHHHHHHHHhcC-CccCCcceecCCCCC
Confidence 47899999999999999999996 99999999999999999999999987 488999999986443
No 17
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=100.00 E-value=4e-91 Score=710.93 Aligned_cols=336 Identities=26% Similarity=0.403 Sum_probs=304.9
Q ss_pred cCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCc
Q 013306 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (445)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp 155 (445)
.||+||.+++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||++|+++|+++|.+++.+|
T Consensus 1 ~GL~gv~~~~t~is~id~~~g~L~yRGy~i~dLa~~~---------sfeeva~LLl~G~lPt~~el~~f~~~L~~~~~lp 71 (363)
T cd06108 1 GGLAGVVAGQTAISTVGKGGKGLTYRGYDIEDLAENA---------TFEEVAYLLLYGKLPTRKQLDAYKTKLVALRRLP 71 (363)
T ss_pred CCCCCCeeeeeeCceEeCCCCEEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 499999999999999999987 699999999999874 6999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhccCCh---hHHHHHhh---hhhhh-------hhcCCc-cc-CCCCCCCHHHHH
Q 013306 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSE---FQEAYEKG---IHKSK-------IYKDGK-II-PKDDSLDYGGNF 220 (445)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~---~~~~y~~~---~~k~~-------~~~~g~-~~-~p~~~l~~a~Nf 220 (445)
+.|++++++||++.|||++|+++|++|+++++ +...+.++ +++.+ +++.|. ++ +|++++||++||
T Consensus 72 ~~v~~~i~~~p~~~hpm~~L~~~vs~l~~~d~~~~~~~~~~~a~rlia~~p~i~a~~~r~~~~~~~~~p~~~~~s~a~nf 151 (363)
T cd06108 72 AALKTVLELIPKDSHPMDVMRTGCSMLGCLEPENEFSQQYEIAIRLLAIFPSILLYWYHYSHSGKRIETETDEDSIAGHF 151 (363)
T ss_pred HHHHHHHHhCCCCCChHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCHHHHH
Confidence 99999999999999999999999999997653 33344333 45555 344444 55 457889999999
Q ss_pred HHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHh
Q 013306 221 SHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDE 298 (445)
Q Consensus 221 l~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ 298 (445)
++||++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+|||||++|++||+++
T Consensus 152 l~ml~g~~p~~~~~~~l~~~LvL~ADH~-~n~St~aaRv~aSt~ad~~sav~agi~al~GplHGGA~e~v~~~l~~i--- 227 (363)
T cd06108 152 LHLLHGKKPGELEIKAMDVSLILYAEHE-FNASTFAARVTASTLSDFYSAITGAIGTLRGPLHGGANEAAMELIERF--- 227 (363)
T ss_pred HHHhcCCCCCHHHHHHHHHHhhhhccCC-CcchHHHHHHHhccCCCHHHHHHHHHHhccCCcccchHHHHHHHHHHh---
Confidence 999987 68889999999999999998 999999999999999999999999999999999999999999999886
Q ss_pred cCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhhhhhHhhcCCCC
Q 013306 299 CGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVVPPILTKLGKVK 375 (445)
Q Consensus 299 ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~~~~~~la~~le~~~~~~~~~~~k~k 375 (445)
+ +++++++||++.+++|++||||||||||..|||+++|+++++++. +++++++++.++++++.+ .|
T Consensus 228 -~---~~~~~~~~v~~~l~~~~~i~GFGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~~a~~ie~~~~~-------~~ 296 (363)
T cd06108 228 -K---SPEEAEQGLLEKLERKELIMGFGHRVYKEGDPRSDIIKKWSKKLSEEGGDPLLYQISERIEEVMWE-------EK 296 (363)
T ss_pred -C---CHHHHHHHHHHHHhcCCeecCCCCCCCCCCCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-------hc
Confidence 4 468999999999999999999999999999999999999999863 568999999999998754 47
Q ss_pred CCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchHHHH
Q 013306 376 NPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIE 438 (445)
Q Consensus 376 ~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~~~ 438 (445)
+++||||||+|+++++||||. ++||++|++||++||+||++||+..+ +|+||++.|+|...
T Consensus 297 ~l~pNvD~~sa~l~~~lG~p~-~~~t~iF~i~R~~Gw~AH~~Eq~~~~-~~iRP~~~Y~G~~~ 357 (363)
T cd06108 297 KLFPNLDFYSASAYHFCGIPT-ELFTPIFVMSRVTGWAAHIMEQRANN-RLIRPSADYIGPEP 357 (363)
T ss_pred CCCcChHHHHHHHHHHcCCCh-hhhhhHHHHHHHHHHHHHHHHHHhcC-CCcCccceecCCCC
Confidence 999999999999999999996 99999999999999999999999877 58899999998643
No 18
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=100.00 E-value=7.3e-91 Score=710.15 Aligned_cols=335 Identities=26% Similarity=0.375 Sum_probs=303.1
Q ss_pred CccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCcH
Q 013306 78 GMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPD 156 (445)
Q Consensus 78 Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp~ 156 (445)
||+||.+.+|+||++|+++| ++||||+|+||+++. +||||+||||+|+|||++|+++|+++|.+++.+|+
T Consensus 2 GL~gv~~~~T~is~v~~~~g~L~YRGy~i~dLa~~~---------~FEeva~LL~~G~lPt~~el~~f~~~L~~~~~lp~ 72 (366)
T cd06117 2 ALSGVAAGNTALCTVGRSGNDLHYRGYDILDLAEKC---------EFEEVAHLLVHGKLPTKSELAAYKTKLKSLRGLPA 72 (366)
T ss_pred CCCCeeEecccCeeeecccCEEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCH
Confidence 89999999999999999988 699999999999985 59999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCChHHHHHHHHHHhccCChhH------HHHHhh---hhhhh-------hhc-CCcccCC-CCCCCHHH
Q 013306 157 YVYKAIDALPVTAHPMTQFASGVMALQVQSEFQ------EAYEKG---IHKSK-------IYK-DGKIIPK-DDSLDYGG 218 (445)
Q Consensus 157 ~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~------~~y~~~---~~k~~-------~~~-~g~~~~p-~~~l~~a~ 218 (445)
.|.++|++||+++|||++|+++|++|++++++. ..++++ +++.+ +++ +++++.| ++++||++
T Consensus 73 ~v~~~i~~~p~~~hpm~~l~~~vs~l~~~~~~~~~~~~~~~~~~a~rlia~~p~i~a~~~r~~~~~~~i~p~~~~~s~a~ 152 (366)
T cd06117 73 NVKTALEQLPAAAHPMDVMRTGVSVLGCVLPEKEDHPVSGARDIADRLMASLGSILLYWYHYSHNGKRIEVETDDDSIGG 152 (366)
T ss_pred HHHHHHHhCCccCCHHHHHHHHHhhhcccCcccccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCcCCHHH
Confidence 999999999999999999999999999876432 223322 44444 233 3446665 66899999
Q ss_pred HHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHH
Q 013306 219 NFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVV 296 (445)
Q Consensus 219 Nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~ 296 (445)
||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||.|++||.++
T Consensus 153 Nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg-~n~ST~aarv~aSt~ad~~sav~agi~aL~GplHGGA~e~v~~~l~~i- 230 (366)
T cd06117 153 HFLHLLHGEKPSESWEKAMHISLILYAEHE-FNASTFTARVIAGTGSDMYSAITGAIGALRGPKHGGANEVAFEIQQRY- 230 (366)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccC-CchHHHHHHHHHccCCcHHHHHHHHHHhccCCccCchHHHHHHHHHHh-
Confidence 99999987 78889999999999999998 999999999999999999999999999999999999999999999875
Q ss_pred HhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhhhhhHhhcCC
Q 013306 297 DECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVVPPILTKLGK 373 (445)
Q Consensus 297 ~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~~~~~~la~~le~~~~~~~~~~~k 373 (445)
+ +++++++||++.+++|++||||||||||..|||+++|+++++++. +.+++++++.++|+++.+
T Consensus 231 ---~---~~~~~~~~i~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~~~~ie~~~~~------- 297 (366)
T cd06117 231 ---E---SADEAEADIRRRVENKEVVIGFGHPVYTIADPRNQVIKEVAKQLSKEGGDMKMFDIAERLETVMWE------- 297 (366)
T ss_pred ---C---CHHHHHHHHHHHHhcCCcccCCCCCCCCCCCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-------
Confidence 5 468999999999999999999999999999999999999999975 457899999999998743
Q ss_pred CCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchHHHH
Q 013306 374 VKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIE 438 (445)
Q Consensus 374 ~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~~~ 438 (445)
.|++|||||||+|+++++||||+ ++||++|++||++||+||++||++.+ +|+||++.|+|...
T Consensus 298 ~k~l~pNvD~~s~~l~~~lG~p~-~~~t~lf~isR~~Gw~AH~~Eq~~~~-~~~RP~~~Y~G~~~ 360 (366)
T cd06117 298 EKKMFPNLDWFSAVSYHMMGVPT-AMFTPLFVIARTTGWSAHIIEQRQDG-KIIRPSANYTGPED 360 (366)
T ss_pred HhCCCcCcHHHHHHHHHHcCcCh-hhhhHHHHHHHHHHHHHHHHHHHhcC-CCccccceecCCCC
Confidence 47899999999999999999996 99999999999999999999999977 58899999998643
No 19
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=100.00 E-value=1.4e-90 Score=710.45 Aligned_cols=341 Identities=29% Similarity=0.453 Sum_probs=310.7
Q ss_pred ccCccCcceeeeecceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCC
Q 013306 76 IGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (445)
Q Consensus 76 ~~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~l 154 (445)
..||+||.+++|+||+||+++|+ +||||+|+||+++. +||||+||||+|++||++|++.|+++|.+++.+
T Consensus 2 ~~Gl~gv~~~~t~is~id~~~G~L~yRGy~i~dL~~~~---------~Feev~~LLl~G~lP~~~el~~~~~~L~~~~~l 72 (373)
T cd06112 2 IPGLAGVPAAESSISYIDGKNGILEYRGYDIEELAEYS---------SFEEVALLLLDGDLPTAAELEEFDKELRQHRRV 72 (373)
T ss_pred CCccCCCeeeeeeceEEeCCCCEEEECCccHHHHhcCC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 36999999999999999999995 99999999999874 699999999999999999999999999999999
Q ss_pred cHHHHHHHHcCCCCCChHHHHHHHHHHhccCChhHH--------HHHhh---hhhhh-------hhcCCc-ccCCCCCCC
Q 013306 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQE--------AYEKG---IHKSK-------IYKDGK-IIPKDDSLD 215 (445)
Q Consensus 155 p~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~~--------~y~~~---~~k~~-------~~~~g~-~~~p~~~l~ 215 (445)
|++|.++|++||++.|||++|+++|++|++++++.. .++++ +++.+ ++++|. ++.|++++|
T Consensus 73 p~~v~~~i~~~p~~~hpm~~L~~~vs~l~~~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~~r~~~g~~~~~p~~~ls 152 (373)
T cd06112 73 KYNIRDMMKCFPETGHPMDMLQATVAALGMFYPKPEVLKPNPDYIDAATVKLIAKMPTLVAMWARIRNGDDPIEPRPDLD 152 (373)
T ss_pred CHHHHHHHHhCCCCCCHHHHHHHHHHhhhccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCCCCCCC
Confidence 999999999999999999999999999998764332 22222 34444 446666 889999999
Q ss_pred HHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHH
Q 013306 216 YGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIK 293 (445)
Q Consensus 216 ~a~Nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~ 293 (445)
|++||++||++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+|||||++|++||+
T Consensus 153 ~~~nfl~ml~g~~p~~~~~~~l~~~Lil~aDHg-~n~STfaaRvvaSt~ad~~s~~~aai~al~GplHGGA~e~~~~~l~ 231 (373)
T cd06112 153 YAENFLYMLFGEEPDPATAKILDACLILHAEHT-MNASTFSALVTGSTLADPYAVISSAIGTLSGPLHGGANEDVLEMLE 231 (373)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCC-CCchHHHHHHHHhcCCcHHHHHHHHHHhccCccccchHHHHHHHHH
Confidence 99999999987 68889999999999999997 9999999999999999999999999999999999999999999998
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhCC----CChHHHHHHHHHHhhhhhHh
Q 013306 294 SVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLP----DDPLFQLVSKLFEVVPPILT 369 (445)
Q Consensus 294 ~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~~----~~~~~~la~~le~~~~~~~~ 369 (445)
++ + +++++++||++.+++|++||||||||||..|||+++|+++++++.. .+++++++.++|+++.+
T Consensus 232 ~i----~---~~~~~~~~v~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~i~~~~e~~~~~--- 301 (373)
T cd06112 232 EI----G---SPENVKAYLDKKLANKQKIWGFGHRVYKTKDPRATILQKLAEDLFAKMGELSKLYEIALEVERLCEE--- 301 (373)
T ss_pred Hh----C---CHHHHHHHHHHHHhcCCeeeCCCCccCCCCCcHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHH---
Confidence 76 5 5689999999999999999999999999999999999999999863 47899999999998854
Q ss_pred hcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchHHHHH
Q 013306 370 KLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEK 439 (445)
Q Consensus 370 ~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~~~~ 439 (445)
+++.|+++||||||+|+++++||||+ ++||++|++||++||+||++||+..+ +|+||++.|+|...+
T Consensus 302 -~~~~k~l~pNvd~~s~~l~~~lG~p~-~~~t~lF~isR~~Gw~AH~~Eq~~~~-~l~RP~~~YvG~~~~ 368 (373)
T cd06112 302 -LLGHKGVYPNVDFYSGIVYKELGIPA-DLFTPIFAVARVAGWLAHWKEQLGDN-RIFRPTQIYIGEIDR 368 (373)
T ss_pred -HhCcCCCCcChHHHHHHHHHHhCcCh-HhhchHHHHHhHHHHHHHHHHHHhcc-CccCCCceecCCCCC
Confidence 34668999999999999999999996 99999999999999999999999976 599999999986543
No 20
>PRK14032 citrate synthase; Provisional
Probab=100.00 E-value=8.2e-90 Score=716.75 Aligned_cols=375 Identities=27% Similarity=0.396 Sum_probs=323.6
Q ss_pred hhChhhHHHHH-HHHHhhCCccccceeecccccCcc-----CcceeeeecceecCC----------CC-eeecCCCHHHH
Q 013306 46 EMIPEQQERLK-KVKSELGKAQLGNITVDMVIGGMR-----GMTGLLWETSLLDPD----------EG-IRFRGLSIPEC 108 (445)
Q Consensus 46 ~~ip~~~~~~k-~l~~~~g~~~~g~~tv~~~~~Glr-----gv~~~~t~iS~iD~~----------~G-i~yRGy~I~eL 108 (445)
+.+|++++.+. ++.++|. +..||+ ||.+.+|+||+||+. +| |+||||+|+||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~-----------~~~GL~~~~~~gv~~~~t~is~v~~~~~~dg~~~~~~G~L~YRGy~I~dL 78 (447)
T PRK14032 10 SELCEKNNKIDPELYDKYD-----------VKRGLRNEDGTGVLVGLTNIGDVHGYEIDDGEKIPDEGKLYYRGYDIKDL 78 (447)
T ss_pred HHHHHHcCCcCHHHHHHhC-----------CCcccccCCCCCeEEeeeEEeeeeceeecCCcccCCCCceeECCccHHHH
Confidence 45666666532 2334433 246999 999999999999984 47 79999999999
Q ss_pred hhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCcHH-HHHHHHcCCCCCChHHHHHHHHHHhccCCh
Q 013306 109 QKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDY-VYKAIDALPVTAHPMTQFASGVMALQVQSE 187 (445)
Q Consensus 109 ~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp~~-v~~~i~~lP~~~hPM~~l~~av~aL~~~~~ 187 (445)
++++||+ ++.+|||++||||+|+|||++|+++|+++|.+++.+|+. +.++++++| +.|||++|+++|++|+++++
T Consensus 79 a~~~~~~---~~~~FeEv~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~~v~~~i~~~p-~~hPM~~L~a~vsaL~~~~~ 154 (447)
T PRK14032 79 VNGFLKE---KRFGFEEVAYLLLFGELPTKEELAEFTELLGDYRELPDGFTRDMILKAP-SKDIMNSLARSVLALYSYDD 154 (447)
T ss_pred Hhhcccc---cCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHhCC-CcCHHHHHHHHHHhhhhcCC
Confidence 9998875 455899999999999999999999999999999999999 899999999 79999999999999998753
Q ss_pred h------HHHHHhh---hhhhh-----hhc------CCc---ccCCCCCCCHHHHHHHHhCC---CChHHHHHHHHHHHH
Q 013306 188 F------QEAYEKG---IHKSK-----IYK------DGK---IIPKDDSLDYGGNFSHMLGF---DDPKMLELMRLYVTI 241 (445)
Q Consensus 188 ~------~~~y~~~---~~k~~-----~~~------~g~---~~~p~~~l~~a~Nfl~ml~~---~~~~~~~~l~~~LiL 241 (445)
. ...++++ +++.+ .|+ +|. +++|++++||++||++||++ +++..+++||++|||
T Consensus 155 ~~~~~~~~~~~~~a~rLiA~~p~i~A~~yr~~~~~~~g~~~~~~~p~~~ls~a~nfl~ml~g~~~p~~~~~~~ld~~LiL 234 (447)
T PRK14032 155 NPDDTSIDNVLRQSISLIARFPTLAVYAYQAYRHYHDGKSLYIHPPKPELSTAENILYMLRPDNKYTELEARLLDLALVL 234 (447)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 2 2222333 45555 222 144 34799999999999999986 467788999999999
Q ss_pred hccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----
Q 013306 242 HSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLN---- 317 (445)
Q Consensus 242 hADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~---- 317 (445)
|||||++|+||||+|+++||++|+|+|++|||++|+||+||||||+|++||.++.+..+...+++++++|+++.++
T Consensus 235 ~ADHg~~naSTfaaRv~aSt~ad~ysavaagi~aL~GplHGGA~e~v~~~l~ei~~~~~~~~s~~~v~~~v~~~l~~~~~ 314 (447)
T PRK14032 235 HAEHGGGNNSTFTTRVVSSSGTDTYSAIAAAIGSLKGPKHGGANIKVMEMFEDIKENVKDWEDEDEIADYLTKILNKEAF 314 (447)
T ss_pred HhccCCCchhHHHHHHHHccCCcHHHHHHHHHHhccCccccCHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcccc
Confidence 9999978999999999999999999999999999999999999999999999997655544468899999999987
Q ss_pred -CCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhhhhhHhh-cCCCCCCCCchhhhHHHHHhcc
Q 013306 318 -SGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVVPPILTK-LGKVKNPWPNVDAHSGVLLNHF 392 (445)
Q Consensus 318 -~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~~~~~~la~~le~~~~~~~~~-~~k~k~l~pNVD~~sg~l~~~l 392 (445)
+|++||||||||||..|||+++|+++++++. +.+++++++.++|+++.+++.+ +++.|+++||||||+|+++++|
T Consensus 315 ~~~~ri~GFGHrvyk~~DPRa~~L~~~~~~l~~~~g~~~~~~~~~~~e~~~~~~~~~~~~~~k~l~pNVDfysa~i~~~l 394 (447)
T PRK14032 315 DKSGLIYGMGHAVYTISDPRAVILKKFAEKLAKEKGREEEFNLYEKIEKLAPELIAEERGIYKGVSANVDFYSGFVYDML 394 (447)
T ss_pred ccCCcccCCCCCCCCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhccCCCCCcChhhHHHHHHHHc
Confidence 5689999999999999999999999999874 4567899999999988765543 4678999999999999999999
Q ss_pred CCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchHH
Q 013306 393 GLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDW 436 (445)
Q Consensus 393 Glp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~ 436 (445)
|||+ ++||++|++||++||+||++||+..+.+|+||++.|+|.
T Consensus 395 Gip~-~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~YvG~ 437 (447)
T PRK14032 395 GIPE-ELYTPLFAIARIVGWSAHRIEELVNGGKIIRPAYKSVLE 437 (447)
T ss_pred CCCh-hhhhhhHHHHhHHHHHHHHHHHHhcCCceecccceeeCC
Confidence 9996 999999999999999999999995555799999999997
No 21
>PRK14035 citrate synthase; Provisional
Probab=100.00 E-value=1.4e-89 Score=701.26 Aligned_cols=339 Identities=26% Similarity=0.383 Sum_probs=308.1
Q ss_pred cccCccCcceeeeecceecCCCCeeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCC
Q 013306 75 VIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (445)
Q Consensus 75 ~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~l 154 (445)
+..||+||.+++|+||+||++ +++||||+|+||+++. +||||+||||+|+|||++|+++|+.+|.+++.+
T Consensus 3 ~~~Gl~~v~~~~s~Is~id~~-~L~YRGy~i~dLa~~~---------~Feeva~LLl~G~lP~~~el~~f~~~L~~~~~l 72 (371)
T PRK14035 3 LQRGLEGVIAAETKISSIIDS-QLTYAGYDIDDLAENA---------SFEEVIFLLWNYRLPTEEELAHLKGKLRKYMTL 72 (371)
T ss_pred CCCCCCCceEeeeeeeEecCC-EeEECCccHHHHHhcC---------CHHHHHHHHHCCcCCCHHHHHHHHHHHHHcCCC
Confidence 457999999999999999985 6999999999999874 699999999999999999999999999999999
Q ss_pred cHHHHHHHHcCC-CCCChHHHHHHHHHHhccCChhH------HHHHhh---hhhhh-------hhcCCc-ccCCCCCCCH
Q 013306 155 PDYVYKAIDALP-VTAHPMTQFASGVMALQVQSEFQ------EAYEKG---IHKSK-------IYKDGK-IIPKDDSLDY 216 (445)
Q Consensus 155 p~~v~~~i~~lP-~~~hPM~~l~~av~aL~~~~~~~------~~y~~~---~~k~~-------~~~~g~-~~~p~~~l~~ 216 (445)
|+.|.+++..+| ++.|||++|+++|++|++++++. ..++++ +++.+ +++.|+ ++.|++++||
T Consensus 73 p~~v~~~i~~~~~~~~hpm~~l~~~vs~l~~~~~~~~~~~~~~~~~~a~rliA~~p~i~A~~~r~~~g~~~~~p~~~ls~ 152 (371)
T PRK14035 73 NDRVYQHFEEYSTDHVHPMTALRTSVSYLAHFDPDAEEESDEARYERAIRIQAKVASLVTAFARVRQGKEPLKPRPDLSY 152 (371)
T ss_pred CHHHHHHHHhcCCcCCCHHHHHHHHHHHHhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCH
Confidence 999999999976 69999999999999999876432 233333 45554 446776 8899999999
Q ss_pred HHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHH
Q 013306 217 GGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKS 294 (445)
Q Consensus 217 a~Nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~ 294 (445)
++||++||++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+|||||++|++||++
T Consensus 153 ~~nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg-~naST~aaRv~aSt~ad~~sav~Agi~al~GplHGGA~e~v~~~l~~ 231 (371)
T PRK14035 153 AANFLYMLRGELPTDIEVEAFNKALVLHADHE-LNASTFTARCAVSSLSDMYSGVVAAVGSLKGPLHGGANERVMDMLSE 231 (371)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHhccCC-CCchHHHHHHHHhcCCcHHHHHHHHHHhccCccccChHHHHHHHHHH
Confidence 9999999986 67888999999999999998 99999999999999999999999999999999999999999999988
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhhhhhHhhc
Q 013306 295 VVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVVPPILTKL 371 (445)
Q Consensus 295 i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~~~~~~la~~le~~~~~~~~~~ 371 (445)
+ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +.+++++++.++|+++.+
T Consensus 232 i----~---~~~~~~~~v~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~~~~~----- 299 (371)
T PRK14035 232 I----R---SIGDVDAYLDEKFANKEKIMGFGHRVYKDGDPRAKYLREMSRKITKGTGREELFEMSVKIEKRMKE----- 299 (371)
T ss_pred h----C---ChHHHHHHHHHHHhcCCcccCCCCCCCCCCCccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH-----
Confidence 6 4 468999999999999999999999999999999999999999975 567999999999998754
Q ss_pred CCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchHHHHHH
Q 013306 372 GKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKN 440 (445)
Q Consensus 372 ~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~~~~~ 440 (445)
.||++||||||+|+++++||||+ ++||++|++||++||+||++||+..+ +|+||++.|+|...+.
T Consensus 300 --~k~l~pNvD~~s~~l~~~lG~p~-~~~t~lf~i~R~~Gw~AH~~Eq~~~~-~l~RP~~~Y~G~~~~~ 364 (371)
T PRK14035 300 --EKGLIPNVDFYSATVYHVMGIPH-DLFTPIFAVSRVAGWIAHILEQYKDN-RIMRPRAKYIGETNRK 364 (371)
T ss_pred --hcCCCCChHHHHHHHHHHcCCCh-HhhhhHHHHHhHHHHHHHHHHHHhcC-CccCCCccccCCCCCC
Confidence 47899999999999999999996 99999999999999999999999876 6999999999975443
No 22
>PRK14034 citrate synthase; Provisional
Probab=100.00 E-value=2.4e-89 Score=699.79 Aligned_cols=336 Identities=26% Similarity=0.419 Sum_probs=305.8
Q ss_pred cccCccCcceeeeecceecCCCCeeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCC
Q 013306 75 VIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (445)
Q Consensus 75 ~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~l 154 (445)
+..||+||.+.+|.||+||++ +++||||+|+||+++. +||||+||||+|+|||++|+++|+++|..++.+
T Consensus 3 ~~~GL~gv~~~~s~is~i~~~-~L~YRGy~i~dLa~~~---------~fEeva~LLl~G~lPt~~el~~f~~~L~~~~~l 72 (372)
T PRK14034 3 VTRGLEGVVATTSSVSSIIDD-TLTYVGYNIDDLAENA---------SFEEVVYLLWHRKLPNKQELAEFKEQLSENAKV 72 (372)
T ss_pred CCCCCCCceEeeeEeeccCCC-eEEECCccHHHHhccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcCC
Confidence 347999999999999999964 6999999999999874 699999999999999999999999999999999
Q ss_pred cHHHHHHHHcCCC-CCChHHHHHHHHHHhccCChhH------HHHHhh---hhhhh-------hhcCCc-ccCCCCCCCH
Q 013306 155 PDYVYKAIDALPV-TAHPMTQFASGVMALQVQSEFQ------EAYEKG---IHKSK-------IYKDGK-IIPKDDSLDY 216 (445)
Q Consensus 155 p~~v~~~i~~lP~-~~hPM~~l~~av~aL~~~~~~~------~~y~~~---~~k~~-------~~~~g~-~~~p~~~l~~ 216 (445)
|+++.+++++||+ +.|||++|+++|++|+.++++. ..++++ +++.+ ++++|. +++|++++||
T Consensus 73 p~~v~~~l~~~p~~~~hpm~~l~~~vs~l~~~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~~r~~~g~~~~~p~~~ls~ 152 (372)
T PRK14034 73 PGEIIEHLKQYDLKKVHPMSVLRTAISMLGLYDEEAEIMDEEANYRKAVRLQAKVPTIVAAFSRIRKGLDPVEPRKDLSL 152 (372)
T ss_pred CHHHHHHHHhCCCcCcCHHHHHHHHHHhhcccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Confidence 9999999999997 5999999999999999876432 234443 44554 345565 8899999999
Q ss_pred HHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHH
Q 013306 217 GGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKS 294 (445)
Q Consensus 217 a~Nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~ 294 (445)
++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+|||||+.|++||++
T Consensus 153 a~nfl~ml~g~~p~~~~~~~l~~~Lvl~aDHg-~n~ST~aaRv~aSt~~d~ysav~agi~al~GplHGGA~e~~~~~l~~ 231 (372)
T PRK14034 153 AANFLYMLNGEEPDEVEVEAFNKALVLHADHE-LNASTFTARVCVATLSDVYSGITAAIGALKGPLHGGANENVMKMLTE 231 (372)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhHhccCC-CCccHHHHHHHhccCCcHHHHHHHHhcccCCCccCCHHHHHHHHHHH
Confidence 9999999987 67788999999999999998 99999999999999999999999999999999999999999999988
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhhhhhHhhc
Q 013306 295 VVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVVPPILTKL 371 (445)
Q Consensus 295 i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~~~~~~la~~le~~~~~~~~~~ 371 (445)
+ + +++++++||++.+++|++||||||||||..|||+++|+++++++. ++++++++++++++++.+
T Consensus 232 i----~---~~~~~~~~v~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~a~~~e~~~~~----- 299 (372)
T PRK14034 232 I----G---EEENVESYIHNKLQNKEKIMGFGHRVYRQGDPRAKHLREMSKRLTVLLGEEKWYNMSIKIEEIVTK----- 299 (372)
T ss_pred h----C---CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-----
Confidence 6 5 468999999999999999999999999999999999999999874 567999999999998743
Q ss_pred CCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchHHH
Q 013306 372 GKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWI 437 (445)
Q Consensus 372 ~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~~ 437 (445)
.|+++||||||+|+++++||||+ ++||++|++||++||+||++||+..+ +|+||++.|+|.-
T Consensus 300 --~k~l~pNvD~~~a~l~~~lG~p~-~~~t~lf~i~R~~Gw~AH~~Eq~~~~-~l~Rp~~~Y~G~~ 361 (372)
T PRK14034 300 --EKGLPPNVDFYSASVYHCLGIDH-DLFTPIFAISRMSGWLAHILEQYENN-RLIRPRADYVGPT 361 (372)
T ss_pred --cCCCCCChHHHHHHHHHHcCCCh-HhccchhHHHhHHHHHHHHHHHHhcC-CccCCCceecCCC
Confidence 47899999999999999999996 99999999999999999999999876 6999999999863
No 23
>PRK14037 citrate synthase; Provisional
Probab=100.00 E-value=3.1e-89 Score=700.62 Aligned_cols=343 Identities=26% Similarity=0.371 Sum_probs=307.9
Q ss_pred cccCccCcceeeeecceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC
Q 013306 75 VIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 153 (445)
Q Consensus 75 ~~~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~ 153 (445)
+.+||+||++.+|+||+||+++|+ +||||+|+||+++. +||||+||||+|+|||++|+++|+++|..++.
T Consensus 4 ~~~GL~gv~~~~t~is~id~~~g~L~yRGy~i~dL~~~~---------~Feev~~LLl~G~lP~~~e~~~f~~~L~~~~~ 74 (377)
T PRK14037 4 ISKGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNYG---------SYEETIYLMLYGELPTKKELNDLKEKLNEEYE 74 (377)
T ss_pred CCCCCCCCeeeeeeceEEeCCCCEEEECCccHHHHHccC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 558999999999999999999995 99999999999885 59999999999999999999999999999999
Q ss_pred CcHHHHHHHHcCCCCCChHHHHHHHHHHhccCCh----hHHHHHhh---hhhhh-------hhcCCc-ccCCCCCCCHHH
Q 013306 154 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSE----FQEAYEKG---IHKSK-------IYKDGK-IIPKDDSLDYGG 218 (445)
Q Consensus 154 lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~----~~~~y~~~---~~k~~-------~~~~g~-~~~p~~~l~~a~ 218 (445)
+|+.++++|++||++.|||++|+++|++|+++++ ....++++ +++.+ +++.|+ ++.|++++||++
T Consensus 75 lp~~v~~~~~~~p~~~hpm~~l~~~vs~l~~~~~~~~~~~~~~~~a~~liA~~p~i~a~~yr~~~g~~~~~p~~~~s~a~ 154 (377)
T PRK14037 75 VPQEVIDSIYLMPRDSDAIGLMEAAFAALASIDKNFKWKENDKEKAISIIAKMATIVANVYRRKEGNKPRIPEPSDSFAE 154 (377)
T ss_pred CCHHHHHHHHhCCccCCcHHHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCHHH
Confidence 9999999999999999999999999999998642 11123333 45554 446776 789999999999
Q ss_pred HHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHH
Q 013306 219 NFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVV 296 (445)
Q Consensus 219 Nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~ 296 (445)
||++||.+ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+|||||++|++||+++
T Consensus 155 nfl~ml~G~~p~~~~~~~l~~~Lil~ADHg-~naST~aarv~aSt~ad~ysav~agi~al~GplHGGA~e~v~~~l~ei- 232 (377)
T PRK14037 155 SFLLASFAREPTAEEIKAMDAALILYTDHE-VPASTTAALVAASTLSDMYSCITAALAALKGPLHGGAAEEAFKQFVEI- 232 (377)
T ss_pred HHHHHHhccCCcHHHHHHHHHHHhHhcccC-CchHhHHHHHhhccCCCHHHHHHHHHHhccCcccCChHHHHHHHHHHh-
Confidence 99999976 78889999999999999998 899999999999999999999999999999999999999999999876
Q ss_pred HhcCCCCChhhHHHHHHHHH-hCCCcccccCCCCCCCCCccHHHHHHHHHhhC---C-CChHHHHHHHHHHhhhhhHhhc
Q 013306 297 DECGENVTTEQLKDYVWKTL-NSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---P-DDPLFQLVSKLFEVVPPILTKL 371 (445)
Q Consensus 297 ~~ig~~~~~~~~~~~v~~~l-~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~-~~~~~~la~~le~~~~~~~~~~ 371 (445)
+ +++++++|+++.+ ++|++||||||+|||..|||+++|+++++++. + .+++++++.++|+++.+ +
T Consensus 233 ---~---~~~~~~~~~~~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~ia~~~e~~~~~----~ 302 (377)
T PRK14037 233 ---G---DPNNVEMWFNDKIINGKKRLMGFGHRVYKTYDPRAKIFKELAETLIERNSEAKKYFEIAQKLEELGIK----Q 302 (377)
T ss_pred ---c---ChhhHHHHHHHHHhcCCCeecCCCCCCCCCCCccHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH----H
Confidence 5 4689999998765 45589999999999999999999999999974 3 37899999999998754 3
Q ss_pred CCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchHHHHH
Q 013306 372 GKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEK 439 (445)
Q Consensus 372 ~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~~~~ 439 (445)
++.|+++||||||+|+++++||||+ ++||++|++||++||+||++||...+.+|+||++.|+|...+
T Consensus 303 ~~~k~l~pNvD~~sa~l~~~lG~p~-~~~t~lf~isR~~Gw~AH~~Eq~~~~~~~~RP~~~Y~G~~~~ 369 (377)
T PRK14037 303 FGSKGIYPNTDFYSGIVFYALGFPV-YMFTALFALSRTLGWLAHIIEYVEEQHRLIRPRALYVGPEHR 369 (377)
T ss_pred hhccCCCCChHHHHHHHHHHcCCCh-hhcchhHHhhhhhHHHHHHHHHHhcCCccccCcceecCCCCC
Confidence 4568999999999999999999996 999999999999999999999998766799999999986443
No 24
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some typ
Probab=100.00 E-value=3.8e-89 Score=704.66 Aligned_cols=341 Identities=28% Similarity=0.425 Sum_probs=307.0
Q ss_pred cccCccCcceeeeecceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC
Q 013306 75 VIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 153 (445)
Q Consensus 75 ~~~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~ 153 (445)
+..||+||.+++|+||+||+++|+ +||||+|+||+++. +||||+||||+|+|||++|+++|+.+|.+++.
T Consensus 27 ~~~GL~gv~v~~S~Is~idg~~G~L~YRGy~i~dLa~~~---------sfEEva~LL~~G~lP~~~el~~f~~~L~~~~~ 97 (400)
T cd06114 27 YDPGFMNTASCESAITYIDGEKGILRYRGYPIEQLAEKS---------SFLEVCYLLLYGELPTAEQLQEFREEITRHTL 97 (400)
T ss_pred CCCCCCCceeEeeeCeEEeCCCCEEEECCccHHHHHhcC---------CHHHHHHHHHcCcCCCHHHHHHHHHHHHHccC
Confidence 357999999999999999999995 99999999999985 59999999999999999999999999999999
Q ss_pred CcHHHHHHHHcCCCCCChHHHHHHHHHHhccCChh-------HHHHHhh---hhhhh-------hhcCCc-ccCCCCCCC
Q 013306 154 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEF-------QEAYEKG---IHKSK-------IYKDGK-IIPKDDSLD 215 (445)
Q Consensus 154 lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~-------~~~y~~~---~~k~~-------~~~~g~-~~~p~~~l~ 215 (445)
+|+.+.++|+++|++.|||++|+++|++|+++++. ...+.++ +++.+ +++.|+ ++.|++++|
T Consensus 98 lp~~v~~~i~~~p~~~~pm~~l~~~vs~l~~~d~~~~~~~~~~~~~~~a~~lia~~p~i~a~~~r~~~g~~~~~p~~~ls 177 (400)
T cd06114 98 VHEQMKRFFNGFPRDAHPMAILSAMVNALSAFYPDSLDVNDPEQRELAAIRLIAKVPTIAAMAYRYSIGQPFIYPDNDLS 177 (400)
T ss_pred CCHHHHHHHHhcccCCCHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcC
Confidence 99999999999999999999999999999986521 1122323 44543 345665 789999999
Q ss_pred HHHHHHHHhCC-------CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHH
Q 013306 216 YGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEV 288 (445)
Q Consensus 216 ~a~Nfl~ml~~-------~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v 288 (445)
|++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+|||||+.|
T Consensus 178 ~a~nfl~ml~g~~~~~~~p~~~~~~~l~~~LvL~aDH~-~n~STfaaRv~aSt~adl~sav~agl~al~GplHGGA~~~v 256 (400)
T cd06114 178 YVENFLHMMFAVPYEPYEVDPVVVKALDTILILHADHE-QNASTSTVRMVGSSGANLFASISAGIAALWGPLHGGANEAV 256 (400)
T ss_pred HHHHHHHHhcCCCCccCCCCHHHHHHHHHHHeeeccCC-CcchHHHHHHHhccCCcHHHHHHHHHHhccCCcccChHHHH
Confidence 99999999974 36788999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhCC--CcccccCCCCCCCCCccHHHHHHHHHhhC----CCChHHHHHHHHHH
Q 013306 289 LLWIKSVVDECGENVTTEQLKDYVWKTLNSG--KVVPGFGHGVLRKTDPRYTCQREFALKHL----PDDPLFQLVSKLFE 362 (445)
Q Consensus 289 ~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g--~~IpGfGH~vyr~~DPRa~~L~~~a~~~~----~~~~~~~la~~le~ 362 (445)
++||.++ + +++++++||++.+++| ++||||||||||..|||+++|+++++++. .+++++++++++|+
T Consensus 257 ~~~l~~i----~---~~~~~~~~v~~~l~~~~~~~ipGfGH~vyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~~~~~ie~ 329 (400)
T cd06114 257 LEMLEEI----G---SVGNVDKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAKILKKTCDEVLAELGKDDPLLEIAMELEE 329 (400)
T ss_pred HHHHHHh----c---CcccHHHHHHHHHhcCCCccccCCCCCCCCCCCccHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 9999886 4 3578999999999987 59999999999999999999999998752 35789999999999
Q ss_pred hhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcC-CCcccCcccchH
Q 013306 363 VVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALG-LPLERPKSVTLD 435 (445)
Q Consensus 363 ~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~-~pI~RP~s~~~~ 435 (445)
++.+ .++++.|+++||||||+|+++++||||+ ++||++|++||++||+||++||+..+ .+|+||++.|+|
T Consensus 330 ~~~~--~~~~~~~~l~pNvD~~~a~l~~~lG~p~-~~~~~lFa~sR~~Gw~AH~~Eq~~~~~~~liRP~~~YvG 400 (400)
T cd06114 330 IALK--DDYFIERKLYPNVDFYSGIILRALGIPT-EMFTVLFALGRTPGWIAQWREMHEDPELKIGRPRQLYTG 400 (400)
T ss_pred HHHH--hhhhcccCCCCChHHHHHHHHHHcCCCh-HhhhhhHHHHhHHHHHHHHHHHHhCCCCceeCcccccCC
Confidence 8765 5677789999999999999999999996 99999999999999999999999974 569999999986
No 25
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=100.00 E-value=2.6e-88 Score=699.70 Aligned_cols=350 Identities=26% Similarity=0.398 Sum_probs=310.3
Q ss_pred Ccceeeeeccee------cCC----CC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 013306 81 GMTGLLWETSLL------DPD----EG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELR 149 (445)
Q Consensus 81 gv~~~~t~iS~i------D~~----~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~ 149 (445)
||.+.+|.||+| |++ +| |+||||+|+||++++||+ ++++||||+||||+|+|||++|+++|+++|.
T Consensus 10 gv~~~~t~is~i~~~~~idg~~~~~~G~L~yRGy~I~dLa~~~p~~---~~~sFEev~yLLl~G~LPt~~el~~f~~~L~ 86 (406)
T cd06113 10 GVLAGLTNISDVVGYKIIDGEKVPCPGKLYYRGYDVEDLVNGAQKE---NRFGFEETAYLLLFGYLPNKEELEEFCEILS 86 (406)
T ss_pred ceEeecceeeeeeeeeecCCcccCCCCeeeECCCcHHHHHhhcccc---cCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 678999999999 898 88 699999999999999874 4568999999999999999999999999999
Q ss_pred hhcCCcHHH-HHHHHcCCCCCChHHHHHHHHHHhccCChh------HHHHHhh---hhhhh-----hhc------CCc--
Q 013306 150 DRATVPDYV-YKAIDALPVTAHPMTQFASGVMALQVQSEF------QEAYEKG---IHKSK-----IYK------DGK-- 206 (445)
Q Consensus 150 ~~~~lp~~v-~~~i~~lP~~~hPM~~l~~av~aL~~~~~~------~~~y~~~---~~k~~-----~~~------~g~-- 206 (445)
+++.+|+.+ .++++++|. .|||++|+++|++|+.+++. ...++++ +++.+ .|+ +|+
T Consensus 87 ~~~~lp~~~~~~~i~~~p~-~hpM~~L~a~v~~l~~~~~~~~~~~~~~~~~~a~rLiA~~p~i~A~~yr~~~~~~~~~~~ 165 (406)
T cd06113 87 SYRTLPDNFVEDVILKAPS-KDIMNKLQRSVLALYSYDDKPDDISLENVLRQSIQLIARLPTIAVYAYQAKRHYYDGESL 165 (406)
T ss_pred HhcCCCHHHHHHHHHhCCC-cCHHHHHHHHHHhccccCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Confidence 999999985 679999995 99999999999999987632 2233333 45554 222 233
Q ss_pred -ccCCCCCCCHHHHHHHHhCC---CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhcccccccc
Q 013306 207 -IIPKDDSLDYGGNFSHMLGF---DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHG 282 (445)
Q Consensus 207 -~~~p~~~l~~a~Nfl~ml~~---~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHG 282 (445)
+++|++++||++||++||++ +++..+++||++||||||||++|+||||+|+++||++|+|+|++|||++|+||+||
T Consensus 166 ~~~~p~~~ls~a~nfl~ml~g~~~p~~~~~~~l~~~Lvl~ADHg~~naST~aaRv~aSt~ad~~~avaagi~al~GplHG 245 (406)
T cd06113 166 YIHHPQPELSTAENILSMLRPDKKYTELEAKLLDLCLVLHAEHGGGNNSTFTTRVVSSSGTDTYSAIAAAIGSLKGPRHG 245 (406)
T ss_pred cccCCCCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHhhhhccCCCcchHHHHHHHHccCCCHHHHHHHHHHHccCcccc
Confidence 45799999999999999986 46778899999999999999789999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC-----CcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHH
Q 013306 283 LANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSG-----KVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLF 354 (445)
Q Consensus 283 gA~~~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g-----~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~~~~~ 354 (445)
||||+|++||.++.+..+.+.+++++++||+++++++ ++||||||||||..|||+++|+++++++. +.++++
T Consensus 246 GA~e~v~~~l~~i~~~~~~~~~~~~v~~~v~~~l~~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~ 325 (406)
T cd06113 246 GANIKVMEMLEDIKENVKDWTDEDEVRAYLRKILNKEAFDKSGLIYGMGHAVYTLSDPRAVVLKKYARSLAKEKGREEEF 325 (406)
T ss_pred ChHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhccccccCceeecCCCCCCCCCCccHHHHHHHHHHHHHhcCcchHH
Confidence 9999999999999765555557889999999999876 59999999999999999999999999874 446799
Q ss_pred HHHHHHHHhhhhhHhh-cCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccc
Q 013306 355 QLVSKLFEVVPPILTK-LGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVT 433 (445)
Q Consensus 355 ~la~~le~~~~~~~~~-~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~ 433 (445)
+++.++|+++.+++.+ +++.|+++||||||+|+++++||||+ ++||++|++||++||+||++||...+.+|+||++.|
T Consensus 326 ~~~~~ie~~~~~~~~~~~~~~r~l~pNvD~~sa~l~~~lG~p~-~~~t~lF~isR~~Gw~AH~~Eq~~~~~~l~RP~~~Y 404 (406)
T cd06113 326 ALYERIERLAPEVIAEERGIGKTVCANVDFYSGFVYKMLGIPQ-ELYTPLFAVARIVGWCAHRIEELLNSGRIIRPAYKY 404 (406)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHcCCCh-hhhhhHHHHHhHHHHHHHHHHHHhcCCceecccccc
Confidence 9999999999877654 47889999999999999999999996 999999999999999999999987655799999999
Q ss_pred hH
Q 013306 434 LD 435 (445)
Q Consensus 434 ~~ 435 (445)
+|
T Consensus 405 ~G 406 (406)
T cd06113 405 VG 406 (406)
T ss_pred CC
Confidence 85
No 26
>PRK12349 citrate synthase 3; Provisional
Probab=100.00 E-value=4.2e-86 Score=676.58 Aligned_cols=337 Identities=27% Similarity=0.387 Sum_probs=303.0
Q ss_pred cccCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC
Q 013306 75 VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 153 (445)
Q Consensus 75 ~~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~ 153 (445)
+..||+|+.+++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||++|++.|+++|.+++.
T Consensus 5 ~~~Gl~g~~~~~S~IS~id~~~g~L~YRGydi~dLa~~~---------sFeeva~LL~~G~LP~~~e~~~f~~~L~~~~~ 75 (369)
T PRK12349 5 FSPGLDGVIAAETKISFLDTVKGEIVIQGYDLIELSKTK---------EYLDIVHLLLEEHLPNEDEKATLEKKLKEEYA 75 (369)
T ss_pred CCCccCCCeeeeeeceeEeCCCCEEEECCccHHHHHccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Confidence 34699999999999999999888 799999999999985 59999999999999999999999999999999
Q ss_pred CcHHHHHHHHcCCCCCChHHHHHHHHHHhccCChhHH------HHHhh---hhhhh-------hhcCCc-ccCCCCCCCH
Q 013306 154 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQE------AYEKG---IHKSK-------IYKDGK-IIPKDDSLDY 216 (445)
Q Consensus 154 lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~~------~y~~~---~~k~~-------~~~~g~-~~~p~~~l~~ 216 (445)
+|+.|.++++.+|++.|||++|+++|++++.+++... ..+++ +++.+ +++.|+ ++.|+++++|
T Consensus 76 ~p~~v~~~l~~~p~~~~pm~~l~~~vs~l~~~d~~~~~~~~~~~~~~a~~lia~~p~i~a~~~r~~~g~~~~~p~~~l~~ 155 (369)
T PRK12349 76 VPEGVFNILKALPKETHPMDGLRTGVSALAGYDNDIEDRSLEVNKSRAYKLLSKVPNIVANSYHILNNEEPIEPLKELSY 155 (369)
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHhcccCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCCCH
Confidence 9999999999999999999999999999998764321 12222 34443 234565 8899999999
Q ss_pred HHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHH
Q 013306 217 GGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKS 294 (445)
Q Consensus 217 a~Nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~ 294 (445)
++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+||+|||++|+||+|||||+.|++||.+
T Consensus 156 a~nfl~ml~g~~p~~~~~~~~~~~Lvl~ADH~-lnaStfa~Rv~aSt~ad~~~av~agl~al~GplHGGA~e~~~~~l~~ 234 (369)
T PRK12349 156 SANFLYMLTGKKPTELEEKIFDRSLVLYSEHE-MPNSTFTARVIASTQSDLYGALTGAVASLKGSLHGGANEAVMYMLLE 234 (369)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHhCcC-ccHHHHHHHHHHccCccHHHHHHHHHHhccCccccChHHHHHHHHHH
Confidence 9999999986 58888999999999999998 89999999999999999999999999999999999999999999987
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCC-CCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhhhhhHhh
Q 013306 295 VVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVL-RKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVVPPILTK 370 (445)
Q Consensus 295 i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vy-r~~DPRa~~L~~~a~~~~---~~~~~~~la~~le~~~~~~~~~ 370 (445)
+ + +++++++||++.+++|++||||||||| +..|||+++|++.++++. +..+++++++++++++.+
T Consensus 235 i----~---~~~~~~~~v~~~l~~~~~i~GFGH~vy~~~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~~---- 303 (369)
T PRK12349 235 A----G---TVEKFEELLQKKLYNKEKIMGFGHRVYMKKMDPRALMMKEALKQLCDVKGDYTLYEMCEAGEKIMEK---- 303 (369)
T ss_pred c----C---CHHHHHHHHHHHHhcCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH----
Confidence 6 4 568999999999999999999999999 668999999999998764 345788888888887743
Q ss_pred cCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchHHH
Q 013306 371 LGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWI 437 (445)
Q Consensus 371 ~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~~ 437 (445)
.|+++||||||+|++++.||||+ +++|++|++||++||+||++||+..+ +|+||++.|+|..
T Consensus 304 ---~~gl~pNvD~~~a~l~~~lG~p~-~~~~~lf~i~R~~Gw~AH~~Eq~~~~-~l~RP~~~Y~G~~ 365 (369)
T PRK12349 304 ---EKGLYPNLDYYAAPVYWMLGIPI-QLYTPIFFSSRTVGLCAHVIEQHANN-RLFRPRVNYIGER 365 (369)
T ss_pred ---hcCCCCCcHHHHHHHHHHcCCCh-hhhhHHHHHHHHHHHHHHHHHHHhcC-CCccccceeeCCC
Confidence 47899999999999999999996 99999999999999999999999986 5899999999854
No 27
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=100.00 E-value=7.9e-86 Score=673.05 Aligned_cols=335 Identities=24% Similarity=0.355 Sum_probs=303.9
Q ss_pred cCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCc
Q 013306 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (445)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp 155 (445)
.||+||++.+|+||++|+++| ++||||+|+||+++. +||||+||||+|++|+++|++.|+.+|.+++.+|
T Consensus 1 ~Gl~gv~~~~s~Is~i~~~~g~L~yRG~di~dLa~~~---------~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~lp 71 (362)
T cd06111 1 KGLAGVVADTTAISKVMPETNSLTYRGYPVQDLAENC---------SFEEVAYLLWNGELPNAAQLAEFSQRERSYRRLD 71 (362)
T ss_pred CCCCCceEecccceEEECCCCeEEECCccHHHHHccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCCC
Confidence 499999999999999999887 799999999999986 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhccCChhH------HHHHhh---hhhhh-------hhcCCc-ccCCCCCCCHHH
Q 013306 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQ------EAYEKG---IHKSK-------IYKDGK-IIPKDDSLDYGG 218 (445)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~------~~y~~~---~~k~~-------~~~~g~-~~~p~~~l~~a~ 218 (445)
+.+.++++.||++.|||++|+++|++|+++++.. ...+.+ +++.+ +++.|. +++|+++++|++
T Consensus 72 ~~~~~~~~~~p~~~~pm~~l~~~vs~l~~~d~~~~~~~~~~~~~~a~~lia~~~~i~a~~~~~~~g~~~~~p~~~ls~a~ 151 (362)
T cd06111 72 RNLLSLIASLPKNCHPMDVLRTAVSVLGAEDSETDDSSPDANLAKAIRLLAQLPTVVAADIRRRKGLDPIPPDSDLGIAE 151 (362)
T ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCCcCHHH
Confidence 9999999999999999999999999999877432 122222 44444 235565 788999999999
Q ss_pred HHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHH
Q 013306 219 NFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVV 296 (445)
Q Consensus 219 Nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~ 296 (445)
||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+|||||+.|++||+++
T Consensus 152 nfl~m~~g~~p~~~~~~~l~~~Lvl~ADHg-~n~St~aaR~~aSt~ad~~~av~agl~aL~GplHGGA~~~~~~~l~ei- 229 (362)
T cd06111 152 NFLHMCFGEVPSPEVVRAFDVSLILYAEHS-FNASTFTARVITSTLSDIYSAITGAIGALKGPLHGGANEAVMHMMLEI- 229 (362)
T ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHhccC-CchhHHHHHHHHccCCCHHHHHHHHHhhccCccccchHHHHHHHHHHh-
Confidence 99999976 58889999999999999998 999999999999999999999999999999999999999999999876
Q ss_pred HhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhhhhhHhhcCC
Q 013306 297 DECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVVPPILTKLGK 373 (445)
Q Consensus 297 ~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~~~~~~la~~le~~~~~~~~~~~k 373 (445)
+ +++++++||++.+++|++||||||||||..|||+++|+++++++. +.+++++++.++++++.+
T Consensus 230 ---~---~~~~~~~~v~~~~~~~~~l~GFGH~vyk~~DPRa~~L~~~l~~l~~~~~~~~~~~~~~~i~~~~~~------- 296 (362)
T cd06111 230 ---D---DPEKAAQWMLDALARKEKVMGFGHRVYKSGDSRVPTMEKALRRVAAVHDGQKWLAMYDALEDAMVA------- 296 (362)
T ss_pred ---C---ChhhHHHHHHHHHhcCCceecCCCCCCCCCCchHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHH-------
Confidence 4 467899999999999999999999999999999999999988763 356899999999987744
Q ss_pred CCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchHHH
Q 013306 374 VKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWI 437 (445)
Q Consensus 374 ~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~~ 437 (445)
.||++||||||+|++++.||||+ +++|++|++||++||+||++||+.++ +|+||++.|+|.-
T Consensus 297 ~~~l~pNvD~~~a~l~~~lG~p~-~~~~~lf~~~R~~Gw~AH~~Eq~~~~-~l~Rp~~~Y~G~~ 358 (362)
T cd06111 297 AKGIKPNLDFPAGPAYYLMGFDI-DFFTPIFVMARITGWTAHIMEQRADN-ALIRPLSEYNGPE 358 (362)
T ss_pred hcCCCCChHHHHHHHHHHcCcCh-hhhhhHHHHHHHHHHHHHHHHHHHcC-CcccCCceeeCCC
Confidence 46899999999999999999996 99999999999999999999999987 6999999999854
No 28
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=1e-85 Score=672.73 Aligned_cols=335 Identities=39% Similarity=0.583 Sum_probs=305.2
Q ss_pred cCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCc
Q 013306 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (445)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp 155 (445)
+||+|+++++|+||+||+++| ++||||+|+||+++. +||||+||||+|+||+++|+++|+.+|..++.+|
T Consensus 1 ~Gl~g~~v~~s~is~id~~~g~l~YRG~~i~dL~~~~---------~feeva~LL~~G~lP~~~el~~f~~~L~~~~~~p 71 (358)
T cd06118 1 PGLEGVKAKETSISYIDGDEGILRYRGYDIEELAEKS---------SFEEVAYLLLYGKLPTKEELAEFKKKLASHRALP 71 (358)
T ss_pred CCCCCceeeeeeeeEEeCCCCeEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Confidence 599999999999999999887 799999999999985 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhccCChhH-----HHH-Hhh---hhhhh-------hhcCCc-ccCCCCCCCHHH
Q 013306 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQ-----EAY-EKG---IHKSK-------IYKDGK-IIPKDDSLDYGG 218 (445)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~-----~~y-~~~---~~k~~-------~~~~g~-~~~p~~~l~~a~ 218 (445)
+.+.++++.+|++.|||++|+++|++++.++++. ..+ .++ +++.+ +++.|. ++.|++++||++
T Consensus 72 ~~v~~~~~~~p~~~~pm~~l~~~~~~l~~~~~~~~~~~~~~~~~~a~~lia~~~~i~a~~~~~~~g~~~~~p~~~~~~~~ 151 (358)
T cd06118 72 EHVVEILDLLPKNAHPMDVLRTAVSALGSFDPFARDKSPEARYEKAIRLIAKLPTIAANIYRNREGLEIIAPDPDLSYAE 151 (358)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHhhhccCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCcccHHH
Confidence 9999999999999999999999999999877432 111 112 33333 235666 788999999999
Q ss_pred HHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHH
Q 013306 219 NFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVV 296 (445)
Q Consensus 219 Nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~ 296 (445)
||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+||||++.|++||+++
T Consensus 152 ~~~~~~~g~~p~~~~~~~l~~~Lvl~aDH~-~n~Stfa~R~~aSt~ad~~~av~agl~al~GplHGGA~~~~~~~l~~~- 229 (358)
T cd06118 152 NFLYMLFGEEPDPEEAKAMDLALILHADHE-GNASTFTARVVASTLSDMYSAIAAAIAALKGPLHGGANEAVLKMLLEI- 229 (358)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhhcCCC-CChHHHHHHHHHccCCCHHHHHHHHHHHccCccccChHHHHHHHHHHh-
Confidence 99999998 88999999999999999999 799999999999999999999999999999999999999999999987
Q ss_pred HhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhCC---CChHHHHHHHHHHhhhhhHhhcCC
Q 013306 297 DECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLP---DDPLFQLVSKLFEVVPPILTKLGK 373 (445)
Q Consensus 297 ~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~~---~~~~~~la~~le~~~~~~~~~~~k 373 (445)
+ +++++++||++.+++|++||||||+|||..|||+++|+++++++.. .+++++++.++++++.+.. +
T Consensus 230 ---~---~~~~~~~~i~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~--~-- 299 (358)
T cd06118 230 ---G---TPENVEAYIWKKLANKRRIMGFGHRVYKTYDPRAKILKELAEELAEEKGDDKLFEIAEELEEIALEVL--G-- 299 (358)
T ss_pred ---C---CchHHHHHHHHHHhcCCeecCCCCCCCCCCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--c--
Confidence 3 3578999999999999999999999999999999999999999854 5899999999999987632 2
Q ss_pred CCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccc
Q 013306 374 VKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVT 433 (445)
Q Consensus 374 ~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~ 433 (445)
.|+++||||||+|+++++||||+ ++||++|++||++||+||++||+.++.+|+||+++|
T Consensus 300 ~r~l~pNvd~~~~~l~~~lg~p~-~~~~~lf~i~R~~Gw~AH~~Eq~~~~~~iiRP~~~Y 358 (358)
T cd06118 300 EKGIYPNVDFYSGVVYKALGFPT-ELFTPLFAVSRAVGWLAHIIEYRENNQRLIRPRAEY 358 (358)
T ss_pred CCCCCcChHHHHHHHHHHcCcCH-HHHhHHHHHHHHhHHHHHHHHHHhCCCCccCCcccC
Confidence 27999999999999999999996 999999999999999999999999986799999987
No 29
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=100.00 E-value=1.6e-86 Score=678.58 Aligned_cols=330 Identities=33% Similarity=0.557 Sum_probs=278.4
Q ss_pred CccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCcH
Q 013306 78 GMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPD 156 (445)
Q Consensus 78 Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp~ 156 (445)
||+|+++++|+||+||+++| ++||||+|.||+++. +||||+||||+|++||++|+++|+++|.+++.+|+
T Consensus 1 Gl~gv~v~~T~Is~id~~~G~L~YRGy~i~dL~~~~---------sfeeva~LL~~g~lP~~~el~~f~~~l~~~~~lpe 71 (356)
T PF00285_consen 1 GLRGVPVCETSISFIDGEKGILRYRGYDIEDLAENA---------SFEEVAYLLWYGELPTAEELEEFSAELKERRALPE 71 (356)
T ss_dssp GGTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHS---------BHHHHHHHHHHSS--BHHHHHHHHHHHHCTTS--H
T ss_pred CCCCCeEeeeeCeEEeCCCCEEEEcCeEHHHHHhcC---------CHHHHHHHHHhccCCChhhhccchhHHHhhcchhH
Confidence 89999999999999999999 799999999999974 69999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCChHHHHHHHHHHhccCChh-------HHHHHhh---hhhhh-------hhcCCc-ccCCCCCCCHHH
Q 013306 157 YVYKAIDALPVTAHPMTQFASGVMALQVQSEF-------QEAYEKG---IHKSK-------IYKDGK-IIPKDDSLDYGG 218 (445)
Q Consensus 157 ~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~-------~~~y~~~---~~k~~-------~~~~g~-~~~p~~~l~~a~ 218 (445)
+|.+++++||+++|||++|+++|++|++++++ ...+..+ +++.+ ++.+|+ +++|+++++|++
T Consensus 72 ~v~~~i~~lp~~~~pm~~L~~~vs~l~~~~~~~~~~~~~~~~~~~~~~liA~~p~i~a~~~~~~~g~~~~~p~~~~~~~~ 151 (356)
T PF00285_consen 72 EVIEVIEALPRDAHPMDVLRAAVSALSAFDPDPLYDNSPEDVLEDAIRLIAKIPTIVAAIYRHRRGQPPIPPDPDLSYAE 151 (356)
T ss_dssp HHHHHHHCSTTTS-HHHHHHHHHHHHHHHSTTGTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------TTSSHHH
T ss_pred HHHHHHhhcCCCCCchHHHHHHHhhhhhhhhccccccchhHHHHHHHHHhhcchHHHHHHHHHhCCCCccccccchHHHH
Confidence 99999999999999999999999999997654 1223333 44554 234566 889999999999
Q ss_pred HHHHHhCC----CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHH
Q 013306 219 NFSHMLGF----DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKS 294 (445)
Q Consensus 219 Nfl~ml~~----~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~ 294 (445)
||++|++. +++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++++||+||||+++|++||++
T Consensus 152 n~l~~l~~~g~~p~~~~~~~l~~~lvl~aDH~-~~~St~aaR~~aSt~~~~~~av~agl~al~G~~hgga~~~~~~~l~~ 230 (356)
T PF00285_consen 152 NFLYMLGVTGREPDPEEARALDAALVLHADHG-LNPSTFAARVAASTGADLYSAVAAGLAALSGPLHGGANEAAMRMLQE 230 (356)
T ss_dssp HHHHHHH-HSSB--HHHHHHHHHHHHHHS--S-SSHHHHHHHHHHTTT--HHHHHHHHHHHHCSTTTTTHHHHHHHHHHH
T ss_pred HHHHHhhccccCCChHHHHHHHHHHHhhcCCC-CCccchhhhhhhccCcchhHHHHhhhhhccCcccccccHHHHHHHHH
Confidence 99999943 58899999999999999997 99999999999999999999999999999999999999999999998
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhhhhhHhhc
Q 013306 295 VVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVVPPILTKL 371 (445)
Q Consensus 295 i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~~~~~~la~~le~~~~~~~~~~ 371 (445)
+ + +++++++||++.+++|++||||||||||..|||+++|+++++++. ..+++++++.++|+++.+.+.
T Consensus 231 i----~---~~~~~~~~v~~~l~~~~~i~GfGH~vy~~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~ie~~~~~~~~-- 301 (356)
T PF00285_consen 231 I----G---SPENVEEYVEERLAKGERIPGFGHRVYKNGDPRAEALLALARELGEEFPDGPLVELAEAIEEAAPEDFK-- 301 (356)
T ss_dssp H----S---SGGGHHHHHHHHHHTTSTTTTBCESSSSS--HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH--
T ss_pred H----H---hhHHHHHHHHHHHhccccccccCCCcCCCCCCChHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHh--
Confidence 7 4 578999999999999999999999999999999999999999987 789999999999999988653
Q ss_pred CCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccC
Q 013306 372 GKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERP 429 (445)
Q Consensus 372 ~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP 429 (445)
.|+++||||||+|+++++||||+ +++|++|++||++||+||++||+..+.+|+||
T Consensus 302 --~~~l~pNvd~~~a~l~~~lG~p~-~~~~~if~~~R~~Gw~AH~~Eq~~~~~~i~RP 356 (356)
T PF00285_consen 302 --ERKLYPNVDFYSAALLRALGFPP-ELFTAIFALSRTAGWIAHILEQRQLNNKIIRP 356 (356)
T ss_dssp --HHTESB-THHHHHHHHHHTT--G-GGHHHHHHHHHHHHHHHHHHHHHHCT------
T ss_pred --hccccCchhhHHHHHHHHHhcch-hhchHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 45799999999999999999996 99999999999999999999999956689999
No 30
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=100.00 E-value=4.6e-85 Score=667.33 Aligned_cols=333 Identities=27% Similarity=0.436 Sum_probs=304.1
Q ss_pred cCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCc
Q 013306 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (445)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp 155 (445)
.||+|+++++|+||++|+++| ++||||||+||+++. +||||+||||+|++|+++|++.|+++|..++.+|
T Consensus 1 ~Gl~g~~~~~T~IS~id~~~g~L~yRG~di~dL~~~~---------~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~~p 71 (356)
T cd06110 1 KGLEGVIAADSKISYIDGDAGILIYRGYDIHDLAENS---------TFEEVAYLLWNGELPTAEELDAFKAQLAAERELP 71 (356)
T ss_pred CCCCCCeeeeeeceEEECCCCeEEECCeeHHHHHhcC---------CHHHHHHHHHcCcCCCHHHHHHHHHhhhhccCCC
Confidence 499999999999999999999 599999999999875 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhccCCh------hHHHHHhh---hhhhh-------hhcCCc-ccCCCCCCCHHH
Q 013306 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSE------FQEAYEKG---IHKSK-------IYKDGK-IIPKDDSLDYGG 218 (445)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~------~~~~y~~~---~~k~~-------~~~~g~-~~~p~~~l~~a~ 218 (445)
+.+.++++++|++.|||++|+++|++++.+++ ....++++ +++.+ .++.|. ++.|+++++|++
T Consensus 72 ~~v~~~~~~~p~~~~pm~~l~~~v~~l~~~~~~~~~~~~~~~~~~a~~lla~~p~i~a~~~~~~~~~~~~~p~~~~~~a~ 151 (356)
T cd06110 72 AEIIDLLKLLPKDAHPMDVLRTAVSALALYDPEADDMSREANLRKAIRLIAKMPTIVAAFHRIRNGLEPVAPDPDLSHAA 151 (356)
T ss_pred HHHHHHHHhCCCCCCchHHHHHHHHhhhhcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCHHH
Confidence 99999999999999999999999999998763 22233333 44443 334555 889999999999
Q ss_pred HHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHH
Q 013306 219 NFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVV 296 (445)
Q Consensus 219 Nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~ 296 (445)
||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+|||||+.|++||+++
T Consensus 152 ~~l~~l~g~~p~~~~~~~l~~~Lvl~aDHg-~n~Stfa~Rv~aSt~ad~~~av~agl~al~GplHGgA~~~~~~~l~~~- 229 (356)
T cd06110 152 NFLYMLTGEKPSEEAARAFDVALILHADHE-LNASTFAARVVASTLSDMYSAVTAAIGALKGPLHGGANERVMKMLLEI- 229 (356)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhccCC-CchhHHHHHHHHhcCCCHHHHHHHHHhhcCCCcccCcHHHHHHHHHHh-
Confidence 99999986 68888999999999999998 999999999999999999999999999999999999999999999986
Q ss_pred HhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhhhhhHhhcCC
Q 013306 297 DECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVVPPILTKLGK 373 (445)
Q Consensus 297 ~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~~~~~~la~~le~~~~~~~~~~~k 373 (445)
+ +.+++++||++.+++|++||||||+|||..|||+++|+++++++. +++++++++.++|+++.+
T Consensus 230 ---~---~~~~~~~~v~~~~~~~~~i~GfGH~vy~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~ie~~~~~------- 296 (356)
T cd06110 230 ---G---SVDNVAAYVKDKLANKEKIMGFGHRVYKTGDPRAKHLREMSRRLGKETGEPKWYEMSEAIEQAMRD------- 296 (356)
T ss_pred ---C---CHHHHHHHHHHHHhcCCeecCCCCccCCCCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------
Confidence 4 467899999999999999999999999999999999999999984 467999999999998865
Q ss_pred CCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchH
Q 013306 374 VKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLD 435 (445)
Q Consensus 374 ~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~ 435 (445)
.||++||||+|+|+++++||||+ +++|++|++||++||+||++||+.++ +|+||+++|+|
T Consensus 297 ~~~l~pNvd~~~a~l~~~lg~p~-~~~~~lf~i~R~~Gw~AH~~Eq~~~~-~iiRP~~~Y~G 356 (356)
T cd06110 297 EKGLNPNVDFYSASVYYMLGIPV-DLFTPIFAISRVSGWCAHILEQYFNN-RLIRPRAEYVG 356 (356)
T ss_pred ccCCCcChHHHHHHHHHHcCcCh-hhhhHHHHHHHHHHHHHHHHHHHHcC-CccCCccccCC
Confidence 37899999999999999999996 99999999999999999999999986 59999999986
No 31
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=100.00 E-value=5.8e-85 Score=668.65 Aligned_cols=337 Identities=29% Similarity=0.444 Sum_probs=306.5
Q ss_pred cCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCc
Q 013306 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (445)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp 155 (445)
.||+|+++++|+||++|+++| ++||||+|.||+++. +||||+||||+|++|+++|++.|..+|..++.+|
T Consensus 1 ~Gl~g~~~~~t~Is~id~~~g~l~yRG~~i~dL~~~~---------~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~~p 71 (368)
T TIGR01800 1 KGLEGVIADETALSTIDGSEGILTYRGYDIEDLAEHA---------SFEEVAYLLLHGKLPTRSELRKFKTELAKLRGLP 71 (368)
T ss_pred CCCCCCeeeeeeceEEECCcceEEECCeeHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCC
Confidence 499999999999999999999 699999999999885 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhccCChhH------HHHHhh---hhhhh-------hhcCCc-ccCCCCCCCHHH
Q 013306 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQ------EAYEKG---IHKSK-------IYKDGK-IIPKDDSLDYGG 218 (445)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~------~~y~~~---~~k~~-------~~~~g~-~~~p~~~l~~a~ 218 (445)
+.+.++++.||++.|||++|+++|++|+.+++.. ..+..+ +++.+ +++.|+ ++.|+++++|++
T Consensus 72 ~~~~~~~~~~p~~~~pm~~l~~~ls~l~~~d~~~~~~~~~~~~~~a~~lia~~p~i~a~~~~~~~g~~~~~p~~~~~~~~ 151 (368)
T TIGR01800 72 DEVIELIEALPAESHPMDALRTAVSYLGALDPEAFGHTPEEARDIAIRLIAKLPTIVAYWYRIRNGLEIVAPKEDDSHAA 151 (368)
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCccHHH
Confidence 9999999999999999999999999999876432 122222 34444 234565 789999999999
Q ss_pred HHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHH
Q 013306 219 NFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVV 296 (445)
Q Consensus 219 Nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~ 296 (445)
||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||++.|++||.++
T Consensus 152 n~l~ml~g~~p~~~~~~~l~~~Lvl~ADHg-~n~St~aaRv~aSt~adl~~av~agl~al~Gp~HGGA~~~~~~~l~~i- 229 (368)
T TIGR01800 152 NFLYMLHGEEPSKEEEKAMDIALILYAEHE-FNASTFAARVAASTLSDMYSAITAAIGALKGPLHGGANEAVMAMLDEI- 229 (368)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHhHhccCC-CchHHHHHHHHhccCCCHHHHHHHHHhhcCCccccCHHHHHHHHHHHh-
Confidence 99999987 57888999999999999998 999999999999999999999999999999999999999999999876
Q ss_pred HhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhhhhhHhhcCC
Q 013306 297 DECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVVPPILTKLGK 373 (445)
Q Consensus 297 ~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~~~~~~la~~le~~~~~~~~~~~k 373 (445)
+ +.+++++||++.+++|++||||||+|||..|||+++|+++++++. +.+++++++.++++++.+
T Consensus 230 ---~---~~~~~~~~v~~~l~~~~~i~GfGH~vy~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------- 296 (368)
T TIGR01800 230 ---G---DPDKAEAWIRKALENKERIMGFGHRVYKTYDPRAKILKEYAKKLSAKEGDSKWYEIAERLEDVMEK------- 296 (368)
T ss_pred ---c---ChHHHHHHHHHHHHCCCccCCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH-------
Confidence 4 467899999999999999999999999999999999999999974 467899999999998865
Q ss_pred CCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchHHHHH
Q 013306 374 VKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEK 439 (445)
Q Consensus 374 ~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~~~~ 439 (445)
.||++||||||+|+++++||||+ +++|++|++||++||+||++||+..+ +|+||++.|+|...+
T Consensus 297 ~~~l~pNvD~~~a~l~~~lg~p~-~~~~~lf~~~R~~Gw~AH~~Eq~~~~-~l~Rp~~~Y~G~~~~ 360 (368)
T TIGR01800 297 EKGIYPNVDFYSGSVYYSMGIPT-DLFTPIFAMSRVSGWTAHIIEQVENN-RLIRPRADYVGPEER 360 (368)
T ss_pred hcCCCCChHHHHHHHHHHcCcCH-HHhhhHHHHHHHHHHHHHHHHHHhcC-CccCccccccCCCCC
Confidence 47899999999999999999996 99999999999999999999999877 599999999987544
No 32
>PRK12350 citrate synthase 2; Provisional
Probab=100.00 E-value=2.8e-85 Score=664.25 Aligned_cols=328 Identities=23% Similarity=0.301 Sum_probs=283.2
Q ss_pred cCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHH---HHHHHHHhhc
Q 013306 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVD---GLSKELRDRA 152 (445)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~---~f~~~l~~~~ 152 (445)
.||+|+.+++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||+.|.+ .|+..+.
T Consensus 3 ~GL~~v~~~~s~Is~idg~~G~L~YRGy~i~dLa~~~---------sFeEva~LL~~G~LP~~~~~~~~~~~~~~~~--- 70 (353)
T PRK12350 3 PGLEGVVAFETEIAEPDGDGGALRYRGVDIEDLVGRV---------TFEDVWALLVDGRFGPGLPPAEPFPLPVHLG--- 70 (353)
T ss_pred CCCCCceeEeeeCcceeCCCCEEEECCccHHHHhccC---------CHHHHHHHHHCCCCCCcchhhhccchHHHhh---
Confidence 699999999999999999999 599999999999985 599999999999999987544 3333322
Q ss_pred CCcHHHHHHHHcCCCCCChHHHHHHHHHHhccCChhHHHHHhhhhhhh-------hhcCC-c-ccCCCCCCCHHHHHHHH
Q 013306 153 TVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSK-------IYKDG-K-IIPKDDSLDYGGNFSHM 223 (445)
Q Consensus 153 ~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~~~y~~~~~k~~-------~~~~g-~-~~~p~~~l~~a~Nfl~m 223 (445)
..+..+...+.. .|||+.|++++ .... .....+-+++.+ +++.| + +++|++++||++||++|
T Consensus 71 ~~~~~~~~~~~~----~~~~~~l~~~~---~~~~--~~~~~rliA~~pti~a~~~r~~~g~~~~i~p~~~ls~a~nfl~m 141 (353)
T PRK12350 71 DARVDVQAALAM----LAPVWGFRPLL---DIDD--LTARLDLARASVMALSAVAQSARGIGQPAVPQREIDHAATILER 141 (353)
T ss_pred ccchhhhhhHHH----hhHHHHHHhhc---CCCC--HHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHH
Confidence 334334444433 56888888865 1111 111123355554 45677 5 89999999999999999
Q ss_pred hCC-----CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHh
Q 013306 224 LGF-----DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDE 298 (445)
Q Consensus 224 l~~-----~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ 298 (445)
|.+ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||.|++||+++
T Consensus 142 l~g~~~~~p~~~~~~~ld~~LiL~ADHg-~naSTfaaRv~aSt~adlysav~agi~aL~GplHGGA~e~v~~ml~ei--- 217 (353)
T PRK12350 142 FMGRWRGEPDPAHVAALDAYWVSAAEHG-MNASTFTARVIASTGADVAAALSGAIGALSGPLHGGAPARVLPMLDAV--- 217 (353)
T ss_pred hccCccCCCCHHHHHHHHHHHHHhccCC-CCcchHHHHHHhccCCcHHHHHHHHHhhcCCCcccChHHHHHHHHHHh---
Confidence 965 37788999999999999998 999999999999999999999999999999999999999999999886
Q ss_pred cCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCC
Q 013306 299 CGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPW 378 (445)
Q Consensus 299 ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~~~~~~~~la~~le~~~~~~~~~~~k~k~l~ 378 (445)
+ +++++++||++.+++|++||||||||||+.|||+++|+++++++. +++++++.++|+++.+.+++++..|+++
T Consensus 218 -~---~~~~~~~~v~~~l~~~~ri~GFGHrvYk~~DPRa~~L~~~~~~l~--~~~~~ia~~le~~~~~~~~~~~~~r~l~ 291 (353)
T PRK12350 218 -E---RTGDARGWVKGALDRGERLMGFGHRVYRAEDPRARVLRATAKRLG--APRYEVAEAVEQAALAELRERRPDRPLE 291 (353)
T ss_pred -C---ChhhHHHHHHHHHHCCCccccCCCCCCCCCCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 5 468999999999999999999999999999999999999999985 6999999999999988766777789999
Q ss_pred CchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchHHH
Q 013306 379 PNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWI 437 (445)
Q Consensus 379 pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~~ 437 (445)
||||||+|++++.||||. ++||++|++||++||+||++||+..+ +|+||++.|+|..
T Consensus 292 pNVDfysa~v~~~lGip~-~~ft~lFai~R~~Gw~AH~~Eq~~~~-~i~RP~~~Y~G~~ 348 (353)
T PRK12350 292 TNVEFWAAVLLDFAGVPA-HMFTAMFTCGRTAGWSAHILEQKRTG-RLVRPSARYVGPA 348 (353)
T ss_pred cChHHHHHHHHHHcCcCh-hhhcchHHhhhHHHHHHHHHHHHhcC-CCcCCCcceeCCC
Confidence 999999999999999996 99999999999999999999999987 5999999999864
No 33
>PRK14033 citrate synthase; Provisional
Probab=100.00 E-value=2.9e-84 Score=663.86 Aligned_cols=339 Identities=24% Similarity=0.347 Sum_probs=306.7
Q ss_pred cccCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC
Q 013306 75 VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 153 (445)
Q Consensus 75 ~~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~ 153 (445)
+..||+||.+++|+||++|+++| ++||||+|+||+++. +||||+||||+|++|+++|++.|+.+|.+++.
T Consensus 9 ~~~GL~gv~v~~S~Is~id~~~g~L~yRG~di~dLa~~~---------sfeeva~LL~~G~lP~~~el~~f~~~l~~~~~ 79 (375)
T PRK14033 9 IKKGLAGVVVDTTAISKVVPETNSLTYRGYPVQDLAARC---------SFEEVAYLLWNGELPTDAELALFSQRERAYRR 79 (375)
T ss_pred CCCCCCCceEeeccCeEEECCCCeEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Confidence 56899999999999999999887 799999999999985 59999999999999999999999999999999
Q ss_pred CcHHHHHHHHcCCCCCChHHHHHHHHHHhccCChhH------HHHHhh---hhhhh-------hhcCCc-ccCCCCCCCH
Q 013306 154 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQ------EAYEKG---IHKSK-------IYKDGK-IIPKDDSLDY 216 (445)
Q Consensus 154 lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~------~~y~~~---~~k~~-------~~~~g~-~~~p~~~l~~ 216 (445)
+|+++.++++.+|++.|||++|+++|++++++++.. ...+++ +++.+ +++.|. +++|+++++|
T Consensus 80 ~p~~v~~~~~~~p~~~~pm~~l~~~vs~l~~~d~~~~~~~~~~~~~~a~~lia~~~~i~a~~~~~~~g~~~~~p~~~~s~ 159 (375)
T PRK14033 80 LDRSVLSLIDKLPTTCHPMDVVRTAVSYLGAEDPEADDSSPEANLAKALRLFAVLPTIVAADQRRRRGLDPIAPRSDLGY 159 (375)
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCH
Confidence 999999999999999999999999999999877432 112222 34443 234566 7899999999
Q ss_pred HHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHH
Q 013306 217 GGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKS 294 (445)
Q Consensus 217 a~Nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~ 294 (445)
++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+||+|||++|+||+||||++.|++||++
T Consensus 160 a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHg-ln~StfaaRv~aSt~adl~~av~agl~al~GplHGGA~e~~~~~l~e 238 (375)
T PRK14033 160 AENFLHMCFGEVPEPEVVRAFEVSLILYAEHS-FNASTFTARVITSTLSDIYSAVTGAIGALKGPLHGGANEAVMHTMLE 238 (375)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHhccCCCHHHHHHHHHhhccCccccChHHHHHHHHHH
Confidence 9999999976 57888999999999999998 99999999999999999999999999999999999999999999988
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhhhhhHhhc
Q 013306 295 VVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVVPPILTKL 371 (445)
Q Consensus 295 i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~~~~~~la~~le~~~~~~~~~~ 371 (445)
+ + +++++++||++.+++|++||||||+|||..|||+++|++.+.++. +.+++++++.++++++.+
T Consensus 239 i----~---~~~~~~~~v~~~~~~~~~l~GFGH~vyk~~DPRa~~L~~~l~~l~~~~~~~~~~~~~~~i~~~~~~----- 306 (375)
T PRK14033 239 I----G---DPARAAEWLRDALARKEKVMGFGHRVYKHGDSRVPTMKAALRRVAAVRDGQRWLDIYEALEKAMAE----- 306 (375)
T ss_pred h----C---ChhHHHHHHHHHHhCCCceecCCCCCCCCCCchHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-----
Confidence 6 4 468999999999999999999999999999999999999988774 457899999999998754
Q ss_pred CCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchHHHHH
Q 013306 372 GKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEK 439 (445)
Q Consensus 372 ~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~~~~ 439 (445)
.|+++||||||+|++++.||||+ +++|++|++||++||+||++||+.++ +|+||++.|+|...+
T Consensus 307 --~~gl~pNvD~~~a~l~~~lGip~-~~~~~lf~~~R~~Gw~AH~~Eq~~~~-~l~RP~~~YvG~~~~ 370 (375)
T PRK14033 307 --ATGIKPNLDFPAGPAYYLMGFDI-DFFTPIFVMSRITGWTAHIMEQRASN-ALIRPLSEYNGPEQR 370 (375)
T ss_pred --HhCCCCCcHHHHHHHHHHcCcCc-hhhhHHHHHHHHHHHHHHHHHHHhcC-CccccCceecCCCCC
Confidence 36899999999999999999996 99999999999999999999999987 699999999986443
No 34
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the
Probab=100.00 E-value=5.6e-74 Score=564.03 Aligned_cols=259 Identities=43% Similarity=0.677 Sum_probs=239.6
Q ss_pred cCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCc
Q 013306 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (445)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp 155 (445)
+||+|+++++|+||.+|+++| ++||||||+||+++. +||||+||||+|+||
T Consensus 1 ~gl~~~~~~~t~is~id~~~g~l~yRGy~i~dL~~~~---------~f~ev~~LL~~G~lP------------------- 52 (265)
T cd06101 1 PGLRGVAALESEISVIDGDEGGLRYRGYPIEELAENS---------SFEEVAYLLLTGELP------------------- 52 (265)
T ss_pred CCCCCcceeeeEEEEEeCCCCEEEECCeeHHHHHhcC---------CHHHHHHHHHcCCCC-------------------
Confidence 599999999999999999987 699999999999986 599999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhccCChhHHHHHhhhhhhhhhcCCcccCCCCCCCHHHHHHHHhCC--CChHHHH
Q 013306 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKIYKDGKIIPKDDSLDYGGNFSHMLGF--DDPKMLE 233 (445)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~~~y~~~~~k~~~~~~g~~~~p~~~l~~a~Nfl~ml~~--~~~~~~~ 233 (445)
+|++||++|+++ +++.+++
T Consensus 53 -----------------------------------------------------------~~~~nfl~m~~g~~p~~~~~~ 73 (265)
T cd06101 53 -----------------------------------------------------------SYAENFLYMLGGEEPDPEFAK 73 (265)
T ss_pred -----------------------------------------------------------cHHHHHHHHhcCCCCCHHHHH
Confidence 268999999987 6889999
Q ss_pred HHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 013306 234 LMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVW 313 (445)
Q Consensus 234 ~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig~~~~~~~~~~~v~ 313 (445)
+||.+||+||||| +|+||||+|+++||++|+|+|++|||++|+||+||||++.|++||+++.+. ..++++++|+
T Consensus 74 ~l~~~Lvl~aDHg-~naST~aaRv~aSt~ad~~~av~agl~al~Gp~HGGA~e~~~~~l~~i~~~-----~~~~~~~~v~ 147 (265)
T cd06101 74 AMDLALILHADHE-GNASTFTARVVGSTLSDPYSAIAAAIAALKGPLHGGANEAVLKMLEEIGTP-----KNEPAEAYIR 147 (265)
T ss_pred HHHHHHhhhcCCC-CchHHHHHHHHHccCCcHHHHHHHHHHhCCCCCcCCHHHHHHHHHHHhCcc-----ccccHHHHHH
Confidence 9999999999999 899999999999999999999999999999999999999999999987421 2368899999
Q ss_pred HHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhCC---CChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHh
Q 013306 314 KTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLP---DDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLN 390 (445)
Q Consensus 314 ~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~~---~~~~~~la~~le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~ 390 (445)
+.+++|++||||||||||+.|||+++|+++++++.. ++++++++.++|+++.+.. + .|+++||||||+|++++
T Consensus 148 ~~~~~~~~i~GFGH~vy~~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~~~~~~~--~--~k~l~pNvd~~~a~v~~ 223 (265)
T cd06101 148 KKLNSKRVLMGFGHRVYKKYDPRATVLKKFAEKLLKEKGLDPMFELAAELEKIAPEVL--Y--EKKLYPNVDFYSGVLYK 223 (265)
T ss_pred HHHhcCCCccCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh--h--ccCCCCChHHHHHHHHH
Confidence 999999999999999999999999999999999854 5899999999999887632 1 37999999999999999
Q ss_pred ccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccc
Q 013306 391 HFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVT 433 (445)
Q Consensus 391 ~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~ 433 (445)
+||||+ ++||++|++||++||+||++||+.++.+|+||++.|
T Consensus 224 ~lG~p~-~~~~~lf~i~R~~Gw~AH~~Eq~~~~~~i~RP~~~Y 265 (265)
T cd06101 224 AMGFPT-ELFTPLFAVSRAVGWLAHLIEQREDGQRIIRPRAEY 265 (265)
T ss_pred HhCCCh-HhhhhHHHHHhHhHHHHHHHHHHhcCCCccCCCccC
Confidence 999996 999999999999999999999999986799999987
No 35
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=1.1e-66 Score=514.50 Aligned_cols=266 Identities=24% Similarity=0.308 Sum_probs=236.1
Q ss_pred CcceeeeecceecCCCCeeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCcHHHHH
Q 013306 81 GMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYK 160 (445)
Q Consensus 81 gv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp~~v~~ 160 (445)
|.++++|.||.+++ ++++|||||+.||+++. +||+|+||||+|++| .
T Consensus 17 g~~~~~t~It~i~~-~~~~yRG~da~~L~~~~---------~~e~va~LLw~g~~~--~--------------------- 63 (282)
T cd06102 17 GEPVLESAITLITE-GRLFYRGRDAVELAETA---------TLEEVAALLWDGDEA--A--------------------- 63 (282)
T ss_pred CCceEEeeeEEEeC-CeeEEcCccHHHHHhcC---------CHHHHHHHHHcCCch--H---------------------
Confidence 66799999999986 45999999999999986 599999999999999 0
Q ss_pred HHHcCCCCCChHHHHHHHHHHhccCChhHHHHHhhhhhhhhhcCCcccCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHH
Q 013306 161 AIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVT 240 (445)
Q Consensus 161 ~i~~lP~~~hPM~~l~~av~aL~~~~~~~~~y~~~~~k~~~~~~g~~~~p~~~l~~a~Nfl~ml~~~~~~~~~~l~~~Li 240 (445)
..|+....++. ..+.++.++++||++|++.+ +...++||++||
T Consensus 64 ------------~~l~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~LV 106 (282)
T cd06102 64 ------------RLLRLLAAALL------------------------GAAPSDAPVHRRLARAWGLD-PAAADLLRRALV 106 (282)
T ss_pred ------------HHHHHHHHHhc------------------------cCCCCcccHHHHHHHHhcCC-HHHHHHHHHHHH
Confidence 11111112111 12345789999999999884 467899999999
Q ss_pred HhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCC
Q 013306 241 IHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGK 320 (445)
Q Consensus 241 LhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~ 320 (445)
|||||| +|+|||++|+++||++|+|+|++|||++|+||+||||++.|++||+++. +++++++||++.+++|+
T Consensus 107 L~ADHg-ln~St~aaRv~AStgadl~~avaagl~al~Gp~HGGA~~~a~~~l~e~~-------~~~~~~~~v~~~l~~g~ 178 (282)
T cd06102 107 LLADHE-LNASTFAARVAASTGASLYAAVLAGLAALSGPRHGGATARVEALLDEAL-------RAGDAEAAVRERLRRGE 178 (282)
T ss_pred HHhccC-CCcHHHHHHHHhccCCcHHHHHHHHHHhCCCCCccCHHHHHHHHHHHhc-------CCccHHHHHHHHHHcCC
Confidence 999998 9999999999999999999999999999999999999999999999873 24688999999999999
Q ss_pred cccccCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccchh
Q 013306 321 VVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYY 400 (445)
Q Consensus 321 ~IpGfGH~vyr~~DPRa~~L~~~a~~~~~~~~~~~la~~le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~ 400 (445)
+||||||++||..|||+++|+++++++.. ++++++.++++++.+ .++++||||||+++++++||||+ +++
T Consensus 179 ~ipGFGH~vy~~~DPRa~~L~~~~~~~~~--~~~~~a~~ve~~~~~-------~~gl~pNvD~a~a~l~~~lG~p~-~~~ 248 (282)
T cd06102 179 ALPGFGHPLYPDGDPRAAALLAALRPLGP--AAPPAARALIEAARA-------LTGARPNIDFALAALTRALGLPA-GAA 248 (282)
T ss_pred cccCCCCCCCCCCCccHHHHHHHHHHHhh--HHHHHHHHHHHHHHH-------HHCCCCChHHHHHHHHHHcCCCh-hhc
Confidence 99999999999999999999999999866 999999999999866 35799999999999999999996 899
Q ss_pred hHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchH
Q 013306 401 TVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLD 435 (445)
Q Consensus 401 t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~ 435 (445)
+++|++||++||+||++||+.++ +++||++.|+|
T Consensus 249 ~~lF~~~R~~GwiAH~~Eq~~~~-~liRP~~~Y~G 282 (282)
T cd06102 249 FALFALGRSAGWIAHALEQRAQG-KLIRPRARYVG 282 (282)
T ss_pred chHHHHHHHHHHHHHHHHHHhcC-CCcCCCcccCC
Confidence 99999999999999999999997 59999999985
No 36
>PRK06224 citrate synthase; Provisional
Probab=100.00 E-value=1.3e-60 Score=469.15 Aligned_cols=243 Identities=23% Similarity=0.241 Sum_probs=219.4
Q ss_pred eeeeecceecCCCCeeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCcHHHHHHHH
Q 013306 84 GLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAID 163 (445)
Q Consensus 84 ~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp~~v~~~i~ 163 (445)
-++|.||++|+++ ++||||+|.||+++. +|+|++||||+|++|+++|+
T Consensus 8 ~~~T~i~~~~~~~-l~yrG~~~~dL~~~~---------sf~e~~~lll~G~lP~~~e~---------------------- 55 (263)
T PRK06224 8 WWRTSISDVTPEE-IYVRGYDLEDLIGKL---------SFTDMIFLLLRGRLPTPNEA---------------------- 55 (263)
T ss_pred CCceeeeeecCCe-eEECCccHHHHhhcC---------CHHHHHHHHHcCCCCCHHHH----------------------
Confidence 4679999999976 999999999999885 59999999999999999986
Q ss_pred cCCCCCChHHHHHHHHHHhccCChhHHHHHhhhhhhhhhcCCcccCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhc
Q 013306 164 ALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHS 243 (445)
Q Consensus 164 ~lP~~~hPM~~l~~av~aL~~~~~~~~~y~~~~~k~~~~~~g~~~~p~~~l~~a~Nfl~ml~~~~~~~~~~l~~~LiLhA 243 (445)
++|+.+|+++|
T Consensus 56 ---------------------------------------------------------------------r~f~a~Lv~~a 66 (263)
T PRK06224 56 ---------------------------------------------------------------------RLLDAVLVALV 66 (263)
T ss_pred ---------------------------------------------------------------------HHHHHHHHHHh
Confidence 68899999999
Q ss_pred cCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhCCCcc
Q 013306 244 DHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVT-TEQLKDYVWKTLNSGKVV 322 (445)
Q Consensus 244 DHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig~~~~-~~~~~~~v~~~l~~g~~I 322 (445)
||| +|+|||++|+++||++|+|+|++||++++ ||+||||++.|++||.++...++.+.+ +++++++|++.++++++|
T Consensus 67 dHg-~~~St~aar~~ast~~~l~~av~agl~a~-G~~hgGa~~~a~~~l~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~i 144 (263)
T PRK06224 67 DHG-LTPSAAAARMTASGGESLQGAVAAGLLAL-GSVHGGAGEQAAELLQEIAAAADAGADLDAAARAIVAEYRAAGKRV 144 (263)
T ss_pred ccC-CCcHHHHHHHHHhcCccHHHHHHHHHhhc-ccccCChhHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHcCCCc
Confidence 998 99999999999999999999999999999 999999999999999999765543223 357899999999999999
Q ss_pred cccCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhH
Q 013306 323 PGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTV 402 (445)
Q Consensus 323 pGfGH~vyr~~DPRa~~L~~~a~~~~~~~~~~~la~~le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~ 402 (445)
|||||++||..|||+++|+++++++...+++++++.++++++.+. +.|+++||||+|+|+++++||||+ +++|+
T Consensus 145 pGFGH~~y~~~DPRa~~L~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~l~~Nvd~~~a~l~~~lG~p~-~~~~~ 218 (263)
T PRK06224 145 PGFGHPLHKPVDPRAPRLLALAREAGVAGRHCRLAEALEAALAAA-----KGKPLPLNVDGAIAAILADLGFPP-ALARG 218 (263)
T ss_pred CCCCCCCCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh-----cCCCCCccHHHHHHHHHHHcCCCh-HHHhH
Confidence 999999999999999999999999987789999999999988652 347899999999999999999996 89999
Q ss_pred HHhhhhhhHHHHHHHHHHHcCCCcccCc------ccchHH
Q 013306 403 LFGVSRSLGICSQLIWDRALGLPLERPK------SVTLDW 436 (445)
Q Consensus 403 lF~vsR~~GwlAH~ieq~~~~~pI~RP~------s~~~~~ 436 (445)
+|+++|++||+||++||+.++. ++||. ..|+|.
T Consensus 219 lf~~~R~~G~~AH~~Eq~~~~~-~~r~~~~~~~~~~Y~G~ 257 (263)
T PRK06224 219 LFVISRAAGLVAHVWEELQQPI-GFRIWDPAEEAVEYTGP 257 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-CcCCCCChhhcceecCC
Confidence 9999999999999999998873 45555 677764
No 37
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) from citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. Some CS proteins function as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. CCL cleaves citryl-CoA (CiCoA) to AcCoA and OAA. ACLs catalyze an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA; they do this in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. The overall CS reaction is thought to proceed through three partial reactions and i
Probab=100.00 E-value=9.8e-60 Score=449.74 Aligned_cols=208 Identities=40% Similarity=0.635 Sum_probs=191.8
Q ss_pred CHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHH
Q 013306 215 DYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWI 292 (445)
Q Consensus 215 ~~a~Nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l 292 (445)
||++||++|+++ +++..+++||++||+|+||| +|+||||+|+++||++|+|+|++|||++++||+||||++.|++||
T Consensus 1 ~~~~~fl~ml~g~~p~~~~~~~l~~~lvl~aDHg-~~~St~aar~~aSt~ad~~~av~Agl~al~Gp~hGGa~~~a~~~l 79 (213)
T cd06099 1 SYAENFLYMLGGEEPDPEFARAMDLALILHADHE-GNASTFTARVVGSTGSDPYSAIAAAIGALKGPLHGGANEAVLKML 79 (213)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCC-CchhhHHHHHHhccCCCHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Confidence 699999999987 78899999999999999999 799999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhCC---CChHHHHHHHHHHhhhhhHh
Q 013306 293 KSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLP---DDPLFQLVSKLFEVVPPILT 369 (445)
Q Consensus 293 ~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~~---~~~~~~la~~le~~~~~~~~ 369 (445)
+++.+ . ..++++++|++.+++|++||||||||||..|||+++|+++++++.. .++++++++++|+++.+..
T Consensus 80 ~e~~~----~-~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~le~~~~~~~- 153 (213)
T cd06099 80 EEIGT----P-KNEPAEAYIRKKLESKRVIMGFGHRVYKKYDPRATVLKKFAEELLKEDGDDPMFELAAELEKIAEEVL- 153 (213)
T ss_pred HHhCC----c-ccccHHHHHHHHHhCCCcccCCCCCCCCCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-
Confidence 98732 1 2368899999999999999999999999999999999999999853 3599999999999887632
Q ss_pred hcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccc
Q 013306 370 KLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVT 433 (445)
Q Consensus 370 ~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~ 433 (445)
+.|+++||||||+|+++++||||+ +++|++|++||++||+||++||+.++.+|+||++.|
T Consensus 154 ---~~r~l~~Nvd~~~a~l~~~lG~p~-~~~~~lf~~~R~~Gw~AH~~Eq~~~~~~l~RP~~~Y 213 (213)
T cd06099 154 ---YEKKLYPNVDFYSGVLYKAMGFPT-ELFTPLFAVARAVGWLAHLIEQLEDNFKIIRPRSEY 213 (213)
T ss_pred ---hccCCCCChHHHHHHHHHHcCcCH-HhhhHHHHHHHHHHHHHHHHHHHhCCCCccCCcccC
Confidence 237999999999999999999996 999999999999999999999999986799999987
No 38
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ACL catalyzes an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. ACL may be required for fruiting body maturation in the filamentous fungus Sordaria macrospore. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL; the first enzyme is citryl-CoA synthetase (CC
Probab=100.00 E-value=4.6e-54 Score=414.55 Aligned_cols=220 Identities=26% Similarity=0.332 Sum_probs=200.1
Q ss_pred CCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCcHHHHHHHHcCCCCCChHHHHHHHHHH
Q 013306 102 GLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMA 181 (445)
Q Consensus 102 Gy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~a 181 (445)
||+|.||+++. +|+|++||+++|++|+++|+
T Consensus 1 G~~~~dL~~~~---------sf~e~~~lml~G~~P~~~e~---------------------------------------- 31 (227)
T cd06100 1 GYDLSDLIGKI---------SFGDVLYLLLKGRLPTPYEA---------------------------------------- 31 (227)
T ss_pred CCCHHHHHhCC---------CHHHHHHHHhCCCCCCHHHH----------------------------------------
Confidence 89999999875 59999999999999998886
Q ss_pred hccCChhHHHHHhhhhhhhhhcCCcccCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCCchhhHHHhhcc
Q 013306 182 LQVQSEFQEAYEKGIHKSKIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASA 261 (445)
Q Consensus 182 L~~~~~~~~~y~~~~~k~~~~~~g~~~~p~~~l~~a~Nfl~ml~~~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt 261 (445)
++|+.+|++++|||.+|+|||++|+++||
T Consensus 32 ---------------------------------------------------~~f~~~Lvl~adhg~~~~St~aar~~ast 60 (227)
T cd06100 32 ---------------------------------------------------RLLEALLVALADHGPATPSAHAARLTASA 60 (227)
T ss_pred ---------------------------------------------------HHHHHHHHHhccCCCCCchHHHHHHHHHc
Confidence 78999999999998339999999999999
Q ss_pred C-CChHHHHHHHHhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHH
Q 013306 262 L-SDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQ 340 (445)
Q Consensus 262 ~-sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L 340 (445)
+ +|+|+|++||++++ ||+||||++.+++|++++.+..++ .++++++||++.+++|++||||||++||..|||+++|
T Consensus 61 g~~~~~~~vaag~~a~-G~~hgga~e~~~~~l~~~~~~~~~--~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~DPRa~~L 137 (227)
T cd06100 61 GPEDLQSAVAAGLLGI-GDRFGGAGEGAARLFKEAVDSGDA--LDAAAAEFVAEYRAAKKRIPGFGHPVHKNPDPRVPRL 137 (227)
T ss_pred CCccHHHHHHHHHhcc-CCcccChHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCchHHHH
Confidence 9 99999999999999 999999999999999998653222 3478999999999999999999999999999999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHH
Q 013306 341 REFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDR 420 (445)
Q Consensus 341 ~~~a~~~~~~~~~~~la~~le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~ 420 (445)
+++++++...+|+++++.++++++.+. +.|+++||||+|+|+++++||||+ ++++++|++||++||+||++||+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~Nvd~~~a~~~~~lG~p~-~~~~~lf~~~R~~G~~AH~~Eq~ 211 (227)
T cd06100 138 LELARELGPAGPHLDYALAVEKALTAA-----KGKPLPLNVDGAIAAILLDLGFPP-GALRGLFVLGRSPGLIAHALEEK 211 (227)
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhc-----cCCCCcccHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988889999999999987551 346899999999999999999996 89999999999999999999999
Q ss_pred HcCCCcccCcc
Q 013306 421 ALGLPLERPKS 431 (445)
Q Consensus 421 ~~~~pI~RP~s 431 (445)
..+ ...||..
T Consensus 212 ~~~-~~~~~~~ 221 (227)
T cd06100 212 RLG-QPLYRHP 221 (227)
T ss_pred hcc-CCCCCCc
Confidence 987 4566653
No 39
>PLN02522 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=2.3e-53 Score=454.55 Aligned_cols=235 Identities=22% Similarity=0.263 Sum_probs=211.8
Q ss_pred cCcceeeeecceecCCCCeeecCCCHHHHhh-hCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCcHHH
Q 013306 80 RGMTGLLWETSLLDPDEGIRFRGLSIPECQK-LLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYV 158 (445)
Q Consensus 80 rgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~-~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp~~v 158 (445)
|-=+...|.||..++++ ++||||+|.||++ ++ +|.+++||||+|+.|++.|.
T Consensus 348 ~~~~~~~t~I~~~~~~~-~~~rG~~i~dlig~~~---------~f~~~~~ll~~g~~p~~~~~----------------- 400 (608)
T PLN02522 348 RAPTHIVSTISDDRGEE-PCYAGVPMSSIIEKDY---------GVGDVISLLWFKRSLPRYCT----------------- 400 (608)
T ss_pred ecccceEEEeecCCCCe-eEECCccHHHHhccCC---------CHHHHHHHHHcCCCCCHHHH-----------------
Confidence 33356788898888765 9999999999998 45 59999999999999997764
Q ss_pred HHHHHcCCCCCChHHHHHHHHHHhccCChhHHHHHhhhhhhhhhcCCcccCCCCCCCHHHHHHHHhCCCChHHHHHHHHH
Q 013306 159 YKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLY 238 (445)
Q Consensus 159 ~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~~~y~~~~~k~~~~~~g~~~~p~~~l~~a~Nfl~ml~~~~~~~~~~l~~~ 238 (445)
++||++
T Consensus 401 --------------------------------------------------------------------------~~ld~~ 406 (608)
T PLN02522 401 --------------------------------------------------------------------------KFIEMC 406 (608)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 799999
Q ss_pred HHHhccCCCCCCch-hhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 013306 239 VTIHSDHEGGNVSA-HTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLN 317 (445)
Q Consensus 239 LiLhADHeg~N~ST-faarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~ 317 (445)
|||+|||| +|+|| |++|+++||++|+|+|++|||+++ ||+||||++.|++||+++.+ +.+++++||++.++
T Consensus 407 Lvl~ADHG-~~aSt~~aarv~AStg~dl~savaaGl~al-Gp~hGGA~e~a~~~l~ei~~------~~~~~~~~V~~~~~ 478 (608)
T PLN02522 407 IMLCADHG-PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD------RGLTPYEFVEGMKK 478 (608)
T ss_pred HHHhccCC-CCccHHHHHHHhhccCCcHHHHHHHHHHhc-CCcccchHHHHHHHHHHHhc------cccCHHHHHHHHHh
Confidence 99999998 99999 699999999999999999999998 99999999999999998742 23478999999999
Q ss_pred CCCcccccCCCCC--CCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCC
Q 013306 318 SGKVVPGFGHGVL--RKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLA 395 (445)
Q Consensus 318 ~g~~IpGfGH~vy--r~~DPRa~~L~~~a~~~~~~~~~~~la~~le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp 395 (445)
+|++|||||||+| +..|||+++|++++++++...++++++.++|+++.+ +.|+++||||+|+|+++.+||+|
T Consensus 479 ~~~~IpGFGHrvy~~~~~DpRa~~L~~~~~~~~~~~~~~~~a~~vE~~~~~------~~k~L~~NVDga~a~i~~~lg~p 552 (608)
T PLN02522 479 KGIRVPGIGHRIKSRDNRDKRVELLQKYARTHFPSVKYMEYAVQVETYTLS------KANNLVLNVDGAIGSLFLDLLAG 552 (608)
T ss_pred CCCccccCCCCCCCCCCCChhHHHHHHHHHHhccccHHHHHHHHHHHHHhh------ccCCCCcCcHhHHHHHHHHcCCC
Confidence 9999999999999 577999999999999998889999999999998643 34899999999999999999999
Q ss_pred ccchhh--------------HHHhhhhhhHHHHHHHHHHHcCCCcccCc
Q 013306 396 EARYYT--------------VLFGVSRSLGICSQLIWDRALGLPLERPK 430 (445)
Q Consensus 396 ~~~~~t--------------~lF~vsR~~GwlAH~ieq~~~~~pI~RP~ 430 (445)
. ++|| ++|++||++||+||++||+...+|+||--
T Consensus 553 ~-~~ft~~e~~~~~~~~~~~~lF~l~R~~GwiAH~~Eq~~~~~~~~r~~ 600 (608)
T PLN02522 553 S-GMFTKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 600 (608)
T ss_pred c-ccCccccccccccccccceEEEeehHHHHHHHHHHHHHhhCCcccCc
Confidence 5 8888 89999999999999999999988888853
No 40
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]
Probab=99.68 E-value=2.3e-17 Score=169.62 Aligned_cols=184 Identities=23% Similarity=0.236 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHhccCCCCCCc-hhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHhcCCCCChhhHH
Q 013306 231 MLELMRLYVTIHSDHEGGNVS-AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLK 309 (445)
Q Consensus 231 ~~~~l~~~LiLhADHeg~N~S-TfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig~~~~~~~~~ 309 (445)
....+|.++.+.+||+ ..+| ++-+-+.+.++.|+++++++|+.. .|++.|||...+.+.+.+.-++ .-...
T Consensus 391 a~kfie~~~m~~aDhg-p~Vsga~ntI~~~ra~kdl~sslv~gLlt-igdRfggald~aaR~f~~ayd~------GL~~m 462 (600)
T KOG1254|consen 391 ARKFIEICTMLTADHG-PAVSGAGNTIANFRAGKDLFSSLVRGLLT-IGDRFGGALDIAARRFGPAYDK------GLAPM 462 (600)
T ss_pred HHHHHHHHhhccCCCC-ceeEeccCceEEeccHHHHHHHHHHHHhh-hhhhhcchhhHHHHhcChhhhc------cCchH
Confidence 4579999999999998 7887 777888889999999999999999 6999999888888877543221 22578
Q ss_pred HHHHHHHhCCCcccccCCCCCC--CCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHH
Q 013306 310 DYVWKTLNSGKVVPGFGHGVLR--KTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGV 387 (445)
Q Consensus 310 ~~v~~~l~~g~~IpGfGH~vyr--~~DPRa~~L~~~a~~~~~~~~~~~la~~le~~~~~~~~~~~k~k~l~pNVD~~sg~ 387 (445)
+++.+.++.+..|||.||++-. +.|-|..++++++++.++..|+++.|.++|++... |..|+..|||...|+
T Consensus 463 ~fv~~~~k~~~~V~Gighriksi~n~d~rv~~lk~~~~~~fp~~~~~~yal~ve~~t~~------k~~nlilnvdg~i~~ 536 (600)
T KOG1254|consen 463 RFVGKMRKVPIEVYGIGHRIKSINNPDKRVEILKAFARKNFPATPLLDYALEVEKITTS------KKPNLILNVDGAIAV 536 (600)
T ss_pred HHhhhhhCCCceecCCcceeeccCCcccchhhHHHHHHhhCCCchHHHhhhhheeeecc------CCCCEEEeccchhHH
Confidence 9999999999999999999974 56889999999999999999999999999998754 677999999999999
Q ss_pred HHhccCCCccchhh--------------HHHhhhhhhHHHHHHHHHHHcCCCcccC
Q 013306 388 LLNHFGLAEARYYT--------------VLFGVSRSLGICSQLIWDRALGLPLERP 429 (445)
Q Consensus 388 l~~~lGlp~~~~~t--------------~lF~vsR~~GwlAH~ieq~~~~~pI~RP 429 (445)
+|.+|=-.. .+|| .+|.++|.+|++.|++.|+++..+++|-
T Consensus 537 ~fvd~l~~~-g~ft~~e~~e~i~ig~lng~fvl~rsig~igh~~dqkrlkq~lyrh 591 (600)
T KOG1254|consen 537 LFVDLLRNS-GMFTKEEADEYINIGALNGLFVLGRSIGFIGHYLDQKRLKQGLYRH 591 (600)
T ss_pred HHHHHHhcc-CCccHHHhhhheecccccceEEeeeecchhhhhccHhhhhCccccC
Confidence 999874432 4444 8999999999999999999998888874
No 41
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) from citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. Some CS proteins function as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. CCL cleaves citryl-CoA (CiCoA) to AcCoA and OAA. ACLs catalyze an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA; they do this in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. The overall CS reaction is thought to proceed through three partial reactions and i
Probab=83.51 E-value=4.4 Score=39.01 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=44.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCcHHHHHHHHcCCCCCChHHHHHHHHHHhc
Q 013306 123 PEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQ 183 (445)
Q Consensus 123 fEev~~LLl~G~lPt~~e~~~f~~~l~~~~--~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (445)
|-+.+|++++|+.|+++|.+.|..-|--.. .++..+....-.--...+|-.-+.++++++.
T Consensus 2 ~~~~fl~ml~g~~p~~~~~~~l~~~lvl~aDHg~~~St~aar~~aSt~ad~~~av~Agl~al~ 64 (213)
T cd06099 2 YAENFLYMLGGEEPDPEFARAMDLALILHADHEGNASTFTARVVGSTGSDPYSAIAAAIGALK 64 (213)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCchhhHHHHHHhccCCCHHHHHHHHHHHcC
Confidence 678999999999999999999999886554 2454443333333344678888888888883
No 42
>PRK14037 citrate synthase; Provisional
Probab=76.84 E-value=7.1 Score=40.93 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCcHHHHHHHHcCCCCCChHHHHHHHHHHhc
Q 013306 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQ 183 (445)
Q Consensus 121 ~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~--~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (445)
-+|-+.+|++++|+.|++++.+.|..-|--+. .++..+....-.--..++|-.-+++|+++|.
T Consensus 150 ~s~a~nfl~ml~G~~p~~~~~~~l~~~Lil~ADHg~naST~aarv~aSt~ad~ysav~agi~al~ 214 (377)
T PRK14037 150 DSFAESFLLASFAREPTAEEIKAMDAALILYTDHEVPASTTAALVAASTLSDMYSCITAALAALK 214 (377)
T ss_pred CCHHHHHHHHHhccCCcHHHHHHHHHHHhHhcccCCchHhHHHHHhhccCCCHHHHHHHHHHhcc
Confidence 36889999999999999999999998886554 3676666543333455688889999999983
No 43
>PRK14035 citrate synthase; Provisional
Probab=68.08 E-value=14 Score=38.68 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CcH--HHHHHHHcCCCCCChHHHHHHHHHHhcc
Q 013306 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPD--YVYKAIDALPVTAHPMTQFASGVMALQV 184 (445)
Q Consensus 121 ~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~--lp~--~v~~~i~~lP~~~hPM~~l~~av~aL~~ 184 (445)
-+|-+.+|++++|+.|+++|.+.|..-|--+.+ +.. ....++.+ ..++|...+.+|+.+|..
T Consensus 150 ls~~~nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg~naST~aaRv~aS--t~ad~~sav~Agi~al~G 215 (371)
T PRK14035 150 LSYAANFLYMLRGELPTDIEVEAFNKALVLHADHELNASTFTARCAVS--SLSDMYSGVVAAVGSLKG 215 (371)
T ss_pred CCHHHHHHHHhccCCCCHHHHHHHHHHHHHhccCCCCchHHHHHHHHh--cCCcHHHHHHHHHHhccC
Confidence 468999999999999999999999988865542 333 33333332 345788888888888743
No 44
>PRK14034 citrate synthase; Provisional
Probab=67.19 E-value=15 Score=38.52 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=45.1
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CcHHHHHHHHcCCCCCChHHHHHHHHHHhcc
Q 013306 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDYVYKAIDALPVTAHPMTQFASGVMALQV 184 (445)
Q Consensus 122 ~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~--lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~ 184 (445)
+|-+.+|++++|+.|+++|.+.|..-|--+.+ +.......--..-..++|-..+++|+++|..
T Consensus 151 s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~aDHg~n~ST~aaRv~aSt~~d~ysav~agi~al~G 215 (372)
T PRK14034 151 SLAANFLYMLNGEEPDEVEVEAFNKALVLHADHELNASTFTARVCVATLSDVYSGITAAIGALKG 215 (372)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCCCCccHHHHHHHhccCCcHHHHHHHHhcccCC
Confidence 68999999999999999999999988865542 3333332222223445688888888888654
No 45
>PRK12349 citrate synthase 3; Provisional
Probab=66.81 E-value=19 Score=37.57 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=46.6
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCcHHHHHHHHcCCCCCChHHHHHHHHHHhc
Q 013306 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQ 183 (445)
Q Consensus 122 ~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~--~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (445)
+|-+.+|++++|+.|++++.+.|..-|--.. .++..+....-.--..++|-..+.+|+++|.
T Consensus 154 ~~a~nfl~ml~g~~p~~~~~~~~~~~Lvl~ADH~lnaStfa~Rv~aSt~ad~~~av~agl~al~ 217 (369)
T PRK12349 154 SYSANFLYMLTGKKPTELEEKIFDRSLVLYSEHEMPNSTFTARVIASTQSDLYGALTGAVASLK 217 (369)
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCcCccHHHHHHHHHHccCccHHHHHHHHHHhcc
Confidence 5889999999999999999999999886554 3555544433333344578888888888883
No 46
>PRK14036 citrate synthase; Provisional
Probab=65.50 E-value=18 Score=37.98 Aligned_cols=64 Identities=19% Similarity=0.102 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCcHHHHHHHHcCCCCCChHHHHHHHHHHhcc
Q 013306 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQV 184 (445)
Q Consensus 121 ~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~--~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~ 184 (445)
-+|-+.+|++++|+.|++++.+.|..-|--+. .+.......--.--.-++|-..+.+|+.+|..
T Consensus 152 l~~a~nfl~ml~g~~p~~~~~~~l~~~Lil~ADHg~naST~aaRv~aSt~ad~ys~v~agi~aL~G 217 (377)
T PRK14036 152 LDYAANFLYMLTEREPDPLAARIFDRCLILHAEHTINASTFSARVTASTLTDPYAVIASAVGTLAG 217 (377)
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhccCCCCchHHHHHHHHhcCCcHHHHHHHHHHHccC
Confidence 36889999999999999999999999886554 23333333322223345788888888887753
No 47
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=64.73 E-value=16 Score=38.35 Aligned_cols=60 Identities=18% Similarity=0.112 Sum_probs=44.0
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCcHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 013306 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (445)
Q Consensus 122 ~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (445)
+|-+.+|++++|+.|++++.+.|..-|--+. .+... ...++.+ ..++|...+.+|+.+|.
T Consensus 152 s~~~nfl~ml~g~~p~~~~~~~l~~~Lil~aDHg~n~STfaaRvvaS--t~ad~~s~~~aai~al~ 215 (373)
T cd06112 152 DYAENFLYMLFGEEPDPATAKILDACLILHAEHTMNASTFSALVTGS--TLADPYAVISSAIGTLS 215 (373)
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCchHHHHHHHHh--cCCcHHHHHHHHHHhcc
Confidence 6889999999999999999999998876554 23333 3333333 33578888888888874
No 48
>KOG2617 consensus Citrate synthase [Energy production and conversion]
Probab=57.77 E-value=1.8 Score=45.44 Aligned_cols=111 Identities=18% Similarity=0.179 Sum_probs=67.2
Q ss_pred ceeecccccCccC------------cceeeeecceecCCCCeeecCCCHHHHhhhCCCCCCCCCCCHHHHHH-HHHhCC-
Q 013306 69 NITVDMVIGGMRG------------MTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLW-LLLTGK- 134 (445)
Q Consensus 69 ~~tv~~~~~Glrg------------v~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~~~~fEev~~-LLl~G~- 134 (445)
..+|+...++|+| +.++.-...-++.++.|+|++.-++|+-+..++++ -.|.+| .|..|+
T Consensus 257 ~gnVsAh~~HLvGSaldpyls~aa~~~GLaGPLHGlAnqEvl~~L~~~~~Eig~~~s~e~------ikeyiw~~ln~~rv 330 (458)
T KOG2617|consen 257 GGNVSAHTGHLVGSALDPYLSFAAGMNGLAGPLHGLANQEVLRFLGKLIEEIGKDLSKEN------IKEYIWKTLNSGRV 330 (458)
T ss_pred cCcHHHHhccccccccchhHHHHHhhcccccccccCchHHHHHHHHHhHHHhccccchhh------hhHhhHHhhccccc
Confidence 6678888899999 88888888999988889999999999987765432 234444 333333
Q ss_pred ---------CCCHHHHHHHHHHHHhhcCCcHH-HHHHHHcCCCCCChHHHHHHHHHHhccCChhH
Q 013306 135 ---------VPSKEQVDGLSKELRDRATVPDY-VYKAIDALPVTAHPMTQFASGVMALQVQSEFQ 189 (445)
Q Consensus 135 ---------lPt~~e~~~f~~~l~~~~~lp~~-v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~ 189 (445)
-+|..+....++.+.++ +|++ .+++. .+-.-+++.+|....-+...+..++
T Consensus 331 vpGyGHavlr~tDPR~~~~~efA~k~--~~~d~l~~l~--~~l~~~~p~vl~e~gk~knp~PNVD 391 (458)
T KOG2617|consen 331 VPGYGHAVLRKTDPRYKVQREFALKH--LPDDPLFLLV--SALYKIAPGVLTEHGKVKNPYPNVD 391 (458)
T ss_pred ccccccccccCCCchhhHHHHHHHhc--CCCCcchhhh--HHHHHhChHHHHHhcccCCCCCcHH
Confidence 24666665555555544 3332 22222 1222345555555555455444443
No 49
>PRK12351 methylcitrate synthase; Provisional
Probab=56.83 E-value=39 Score=35.56 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=45.0
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CcHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 013306 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (445)
Q Consensus 122 ~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~--lp~~--v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (445)
++-+.+|++++|+.|++++.+.|..-|--+.+ +... ...+..+ ..++|-.-+++||.+|.
T Consensus 158 s~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~~naST~aaRvvaS--t~ad~~sav~agi~aL~ 221 (378)
T PRK12351 158 SIGGHFLHLLHGKKPSESWVKAMHTSLILYAEHEFNASTFTARVIAG--TGSDMYSAITGAIGALR 221 (378)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccCCchHHHHHHHHhc--cCCCHHHHHHHHHHhcc
Confidence 58899999999999999999999998865542 3333 3344443 34578888888888883
No 50
>PRK14033 citrate synthase; Provisional
Probab=55.85 E-value=40 Score=35.39 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=44.3
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCcHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 013306 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (445)
Q Consensus 122 ~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (445)
+|-+.+|++++|+.|++.+.+.|..-|--.. .+... +..++.+ ..++|-..+.+|+++|.
T Consensus 158 s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHgln~StfaaRv~aS--t~adl~~av~agl~al~ 221 (375)
T PRK14033 158 GYAENFLHMCFGEVPEPEVVRAFEVSLILYAEHSFNASTFTARVITS--TLSDIYSAVTGAIGALK 221 (375)
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCcHHHHHHHHhc--cCCCHHHHHHHHHhhcc
Confidence 5889999999999999999999998875543 23333 3344444 34577788888888884
No 51
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=55.03 E-value=40 Score=35.17 Aligned_cols=62 Identities=18% Similarity=0.149 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCcH--HHHHHHHcCCCCCChHHHHHHHHHHhcc
Q 013306 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPD--YVYKAIDALPVTAHPMTQFASGVMALQV 184 (445)
Q Consensus 121 ~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~av~aL~~ 184 (445)
-+|-+.+|++++|+.|++++.+.|..-|--+. .+.. .+..++.+ ..++|-.-+.+++++|..
T Consensus 147 ls~a~nfl~m~~g~~p~~~~~~~l~~~Lvl~ADHg~n~St~aaR~~aS--t~ad~~~av~agl~aL~G 212 (362)
T cd06111 147 LGIAENFLHMCFGEVPSPEVVRAFDVSLILYAEHSFNASTFTARVITS--TLSDIYSAITGAIGALKG 212 (362)
T ss_pred cCHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhccCCchhHHHHHHHHc--cCCCHHHHHHHHHhhccC
Confidence 35889999999999999999999998765443 2333 33444444 345777888888888743
No 52
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=52.79 E-value=44 Score=34.94 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCcHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 013306 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (445)
Q Consensus 121 ~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (445)
-+|-+.+|.+++|+.|++++.+.|..-|--+. .+... ...++.+ ..++|-.-+++|+.+|.
T Consensus 145 ~s~a~nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~~n~St~aaRv~aS--t~ad~~sav~agi~al~ 209 (363)
T cd06108 145 DSIAGHFLHLLHGKKPGELEIKAMDVSLILYAEHEFNASTFAARVTAS--TLSDFYSAITGAIGTLR 209 (363)
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccCCCcchHHHHHHHhc--cCCCHHHHHHHHHHhcc
Confidence 36889999999999999999999998886554 23333 3334443 45678888888898884
No 53
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=52.00 E-value=45 Score=35.41 Aligned_cols=60 Identities=12% Similarity=0.045 Sum_probs=44.6
Q ss_pred CHHHHHHHHHhC-CCCCHHHHHHHHHHHHhhc--C-CcHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 013306 122 LPEGLLWLLLTG-KVPSKEQVDGLSKELRDRA--T-VPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (445)
Q Consensus 122 ~fEev~~LLl~G-~lPt~~e~~~f~~~l~~~~--~-lp~~--v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (445)
+|-+.||++++| +.|+++|.+.|..-|--+. . ++.. ...++.+ .-++|-.-+++|+.+|.
T Consensus 175 s~a~nfl~ml~g~~~p~~~~~~~l~~~Lvl~ADHg~~naST~aaRv~aS--t~ad~~~avaagi~al~ 240 (406)
T cd06113 175 STAENILSMLRPDKKYTELEAKLLDLCLVLHAEHGGGNNSTFTTRVVSS--SGTDTYSAIAAAIGSLK 240 (406)
T ss_pred CHHHHHHHHhccCCCCCHHHHHHHHHHHhhhhccCCCcchHHHHHHHHc--cCCCHHHHHHHHHHHcc
Confidence 688999999999 5999999999998875443 2 3333 4444444 34588888999999883
No 54
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=49.80 E-value=58 Score=34.08 Aligned_cols=60 Identities=18% Similarity=0.167 Sum_probs=44.6
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCcHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 013306 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (445)
Q Consensus 122 ~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (445)
++-+.||.+++|+.|++++.+.|..-|--+. .+... ...++.+ ..++|-.-+++|+++|.
T Consensus 149 s~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg~n~ST~aarv~aS--t~ad~~sav~agi~aL~ 212 (366)
T cd06117 149 SIGGHFLHLLHGEKPSESWEKAMHISLILYAEHEFNASTFTARVIAG--TGSDMYSAITGAIGALR 212 (366)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccCCchHHHHHHHHHc--cCCcHHHHHHHHHHhcc
Confidence 6889999999999999999999999886554 24333 3334444 34577788888888874
No 55
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=49.00 E-value=63 Score=33.77 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCcH--HHHHHHHcCCCCCChHHHHHHHHHHhc
Q 013306 120 EPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (445)
Q Consensus 120 ~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (445)
+.+|.+.+|++++|+.|++++.+.|..-|.-+. .+.. .+..++.+ ..++|-.-+++++.+|.
T Consensus 146 ~~~~~~n~l~ml~g~~p~~~~~~~l~~~Lvl~ADHg~n~St~aaRv~aS--t~adl~~av~agl~al~ 211 (368)
T TIGR01800 146 DDSHAANFLYMLHGEEPSKEEEKAMDIALILYAEHEFNASTFAARVAAS--TLSDMYSAITAAIGALK 211 (368)
T ss_pred CccHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCCCchHHHHHHHHhc--cCCCHHHHHHHHHhhcC
Confidence 346889999999999999999999998876554 2333 34444444 34678888899998884
No 56
>PRK14032 citrate synthase; Provisional
Probab=46.24 E-value=65 Score=34.65 Aligned_cols=60 Identities=10% Similarity=0.054 Sum_probs=45.1
Q ss_pred CHHHHHHHHHhCC-CCCHHHHHHHHHHHHhhc--C-CcHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 013306 122 LPEGLLWLLLTGK-VPSKEQVDGLSKELRDRA--T-VPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (445)
Q Consensus 122 ~fEev~~LLl~G~-lPt~~e~~~f~~~l~~~~--~-lp~~--v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (445)
+|-+.||.+++|+ .|++.+.+.|..-|--+. . ++.. ...++.+ ..++|-.-+++|+.+|.
T Consensus 205 s~a~nfl~ml~g~~~p~~~~~~~ld~~LiL~ADHg~~naSTfaaRv~aS--t~ad~ysavaagi~aL~ 270 (447)
T PRK14032 205 STAENILYMLRPDNKYTELEARLLDLALVLHAEHGGGNNSTFTTRVVSS--SGTDTYSAIAAAIGSLK 270 (447)
T ss_pred CHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhccCCCchhHHHHHHHHc--cCCcHHHHHHHHHHhcc
Confidence 5889999999999 999999999998875443 2 4444 3334444 44688889999999983
No 57
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=46.22 E-value=65 Score=33.47 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--C--cHHHHHHHHcCCCCCChHHHHHHHHHHhc
Q 013306 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--V--PDYVYKAIDALPVTAHPMTQFASGVMALQ 183 (445)
Q Consensus 121 ~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~--l--p~~v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (445)
-+|-+.+|++++|+.|++++.+.|..-|--+.+ + +..+..++.+-. ++|-..+.+++++|.
T Consensus 147 ~~~a~~~l~~l~g~~p~~~~~~~l~~~Lvl~aDHg~n~Stfa~Rv~aSt~--ad~~~av~agl~al~ 211 (356)
T cd06110 147 LSHAANFLYMLTGEKPSEEAARAFDVALILHADHELNASTFAARVVASTL--SDMYSAVTAAIGALK 211 (356)
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCchhHHHHHHHHhcC--CCHHHHHHHHHhhcC
Confidence 358899999999999999999999988765542 3 334555666544 577788888888883
No 58
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=46.04 E-value=68 Score=33.34 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=46.1
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCcHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 013306 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (445)
Q Consensus 122 ~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (445)
+|-+.+|.+++|+.|++++.+.|..-|--+. .++.. +..++.+- .++|-..+++|+++|.
T Consensus 148 ~~~~~~~~~~~g~~p~~~~~~~l~~~Lvl~aDH~~n~Stfa~R~~aSt--~ad~~~av~agl~al~ 211 (358)
T cd06118 148 SYAENFLYMLFGEEPDPEEAKAMDLALILHADHEGNASTFTARVVAST--LSDMYSAIAAAIAALK 211 (358)
T ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCCCChHHHHHHHHHcc--CCCHHHHHHHHHHHcc
Confidence 4789999999999999999999999886554 24443 44455543 4688889999999884
No 59
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=43.65 E-value=72 Score=33.14 Aligned_cols=60 Identities=22% Similarity=0.253 Sum_probs=44.8
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc----CCcHHHHHHHHcCCCCCChHHHHHHHHHHhc
Q 013306 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA----TVPDYVYKAIDALPVTAHPMTQFASGVMALQ 183 (445)
Q Consensus 122 ~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~----~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (445)
++-+.||.+++|+.|++++.+.|..-|--+. ..+.....++.+ ..++|-.-+++|+.+|.
T Consensus 137 s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHg~n~ST~aaRv~aS--t~ad~~savaagi~al~ 200 (349)
T cd06109 137 SHAADYLRMLTGEPPSEAHVRALDAYLVTVADHGMNASTFTARVIAS--TEADLTSAVLGAIGALK 200 (349)
T ss_pred CHHHHHHHHhCCCCCChHHHHHHHHHHhHhcccCCCchhhHHHHHhc--cCCcHHHHHHHHHHhcc
Confidence 6889999999999999999999999886543 223334444444 34588888889998884
No 60
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=41.25 E-value=87 Score=29.89 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=53.2
Q ss_pred CCCCccHHHHHHHHHhhCCC-ChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhh
Q 013306 331 RKTDPRYTCQREFALKHLPD-DPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRS 409 (445)
Q Consensus 331 r~~DPRa~~L~~~a~~~~~~-~~~~~la~~le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~ 409 (445)
|++|||+.-+++++.++... +.+.++..++.+-..++..++ .=.|.+|..++..++.+-.+|=.+|+.
T Consensus 10 ~~~d~~F~~ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~-----------~e~g~~f~~ls~~E~~l~~~le~~g~~ 78 (201)
T cd07622 10 RNPDKRFEDLKNYSDELQTNLNNLLKVRARLAERLYGVYKIH-----------ANYGRVFSEWSAIEKEMGDGLQKAGHY 78 (201)
T ss_pred CCCCHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 47999999999999887432 334555555444333322221 334667777777777777888888888
Q ss_pred hHHHHHHHHHHHc
Q 013306 410 LGICSQLIWDRAL 422 (445)
Q Consensus 410 ~GwlAH~ieq~~~ 422 (445)
++-++-.++....
T Consensus 79 ~d~~~~~~~~~~~ 91 (201)
T cd07622 79 MDSYAASIDNGLE 91 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 8877777776543
No 61
>PTZ00096 40S ribosomal protein S15; Provisional
Probab=39.56 E-value=22 Score=32.25 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=18.2
Q ss_pred eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHH
Q 013306 98 IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLL 130 (445)
Q Consensus 98 i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LL 130 (445)
..|||++++||.+. ..||.+=||
T Consensus 15 f~yRG~~l~~L~~m----------~~~e~~~L~ 37 (143)
T PTZ00096 15 FTYRGVELEKLLAL----------PEEELVELF 37 (143)
T ss_pred eeeecCCHHHHHcC----------CHHHHHHHc
Confidence 48999999999986 367766653
No 62
>PF07583 PSCyt2: Protein of unknown function (DUF1549); InterPro: IPR011444 The function is not known. It is found associated with IPR022655 from INTERPRO. It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=39.40 E-value=37 Score=32.74 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=20.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHH
Q 013306 123 PEGLLWLLLTGKVPSKEQVDGLSKE 147 (445)
Q Consensus 123 fEev~~LLl~G~lPt~~e~~~f~~~ 147 (445)
|--=++|=|+|.+||.+|+++|.+.
T Consensus 27 ~lRRv~LDL~G~~PT~eEv~~Fl~d 51 (208)
T PF07583_consen 27 FLRRVYLDLTGLPPTPEEVRAFLAD 51 (208)
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHhC
Confidence 4444689999999999999999874
No 63
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the
Probab=38.79 E-value=1.3e+02 Score=29.88 Aligned_cols=78 Identities=21% Similarity=0.187 Sum_probs=52.2
Q ss_pred CCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CcHHHHHHHHcCCCCCChHHHHHHHHH
Q 013306 103 LSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDYVYKAIDALPVTAHPMTQFASGVM 180 (445)
Q Consensus 103 y~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~--lp~~v~~~i~~lP~~~hPM~~l~~av~ 180 (445)
.+.+|.+-.+= .|.-|++-+.++.+++|+-|+++|.+.|..-|--+.+ +...+....-.--..++|-.-+.++++
T Consensus 37 ~~f~ev~~LL~---~G~lP~~~~nfl~m~~g~~p~~~~~~~l~~~Lvl~aDHg~naST~aaRv~aSt~ad~~~av~agl~ 113 (265)
T cd06101 37 SSFEEVAYLLL---TGELPSYAENFLYMLGGEEPDPEFAKAMDLALILHADHEGNASTFTARVVGSTLSDPYSAIAAAIA 113 (265)
T ss_pred CCHHHHHHHHH---cCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCCCchHHHHHHHHHccCCcHHHHHHHHHH
Confidence 66777654331 2444578899999999999999999999988755442 333333322222344577788888888
Q ss_pred Hhc
Q 013306 181 ALQ 183 (445)
Q Consensus 181 aL~ 183 (445)
+|.
T Consensus 114 al~ 116 (265)
T cd06101 114 ALK 116 (265)
T ss_pred hCC
Confidence 874
No 64
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=38.26 E-value=1.2e+02 Score=31.37 Aligned_cols=61 Identities=21% Similarity=0.218 Sum_probs=43.2
Q ss_pred CHHHHHHHHH--hCCCCCHHHHHHHHHHHHhhc--CCcHH--HHHHHHcCCCCCChHHHHHHHHHHhcc
Q 013306 122 LPEGLLWLLL--TGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQV 184 (445)
Q Consensus 122 ~fEev~~LLl--~G~lPt~~e~~~f~~~l~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~av~aL~~ 184 (445)
+|-|.++.+| +|+-|++++.+.|..-|--+. .+... +..++. -...+|-.-+.+|+++|..
T Consensus 148 ~~~~n~l~~l~~~g~~p~~~~~~~l~~~lvl~aDH~~~~St~aaR~~a--St~~~~~~av~agl~al~G 214 (356)
T PF00285_consen 148 SYAENFLYMLGVTGREPDPEEARALDAALVLHADHGLNPSTFAARVAA--STGADLYSAVAAGLAALSG 214 (356)
T ss_dssp SHHHHHHHHHH-HSSB--HHHHHHHHHHHHHHS--SSSHHHHHHHHHH--TTT--HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhhccccCCChHHHHHHHHHHHhhcCCCCCccchhhhhhh--ccCcchhHHHHhhhhhccC
Confidence 5788888888 999999999999999986665 34443 444444 3567888999999999853
No 65
>PRK13755 putative mercury transport protein MerC; Provisional
Probab=35.96 E-value=31 Score=30.70 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=19.6
Q ss_pred hhhHHHhhhhhhHHHHHHHHHHHc
Q 013306 399 YYTVLFGVSRSLGICSQLIWDRAL 422 (445)
Q Consensus 399 ~~t~lF~vsR~~GwlAH~ieq~~~ 422 (445)
.|.++-.++-..||.+|..|+|..
T Consensus 56 lFA~iALlanalgW~sHRQW~Rs~ 79 (139)
T PRK13755 56 LFAAIALLANALGWFSHRQWLRSA 79 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666788999999999999975
No 66
>PRK04038 rps19p 30S ribosomal protein S19P; Provisional
Probab=35.77 E-value=29 Score=31.22 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=18.0
Q ss_pred eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHH
Q 013306 98 IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLL 130 (445)
Q Consensus 98 i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LL 130 (445)
..|||++++||.+. ..||.+=||
T Consensus 7 f~yrG~~l~~L~~m----------~~~~~~~l~ 29 (134)
T PRK04038 7 FTYRGYTLEELQEM----------SLEEFAELL 29 (134)
T ss_pred eeecccCHHHHHcC----------CHHHHHHHc
Confidence 47999999999986 367766553
No 67
>TIGR01025 rpsS_arch ribosomal protein S19(archaeal)/S15(eukaryotic). This model represents eukaryotic ribosomal protein S15 and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15.
Probab=33.35 E-value=33 Score=30.95 Aligned_cols=14 Identities=36% Similarity=0.809 Sum_probs=12.6
Q ss_pred eeecCCCHHHHhhh
Q 013306 98 IRFRGLSIPECQKL 111 (445)
Q Consensus 98 i~yRGy~I~eL~~~ 111 (445)
..|||++++||.+.
T Consensus 5 f~yrG~~l~~L~~m 18 (135)
T TIGR01025 5 FRYRGYTLEELQDM 18 (135)
T ss_pred EeecccCHHHHHcC
Confidence 47999999999986
No 68
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=33.21 E-value=87 Score=30.65 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=44.6
Q ss_pred CCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCC-CCCHHHHHHHHHHHHhhcCCcHHHHHHHHcCC
Q 013306 103 LSIPECQKLLPAAKPDGEPLPEGLLWLLLTGK-VPSKEQVDGLSKELRDRATVPDYVYKAIDALP 166 (445)
Q Consensus 103 y~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~-lPt~~e~~~f~~~l~~~~~lp~~v~~~i~~lP 166 (445)
||-+||.+.+. .+|.++|==.+|+ +|+.++.++|-++|..+..+.+.+.+-|.-+|
T Consensus 24 ~ty~el~~~~g--------~p~~~l~RYv~g~~~P~~~~a~~~~~~l~~~~~~~~~l~~ri~~~~ 80 (238)
T PRK08558 24 YTYEELSSITG--------LPESVLNRYVNGHVLPSVERAREIVEKLGPYYNLEEEVKARIKVDD 80 (238)
T ss_pred cCHHHHHHHHC--------CCHHHHHHHHcCCcCCCHHHHHHHHHHHHHhhhhHHHHHhhcccCC
Confidence 57888887652 6899999888988 69999999999999888777666666665555
No 69
>PRK13890 conjugal transfer protein TrbA; Provisional
Probab=32.98 E-value=1.5e+02 Score=25.80 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=20.0
Q ss_pred ecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCC-CCCHHHHHHHHHHH
Q 013306 100 FRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGK-VPSKEQVDGLSKEL 148 (445)
Q Consensus 100 yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~-lPt~~e~~~f~~~l 148 (445)
-||++.+||++.+.. + .+.++-+..|+ -|+.+-+..+.+.|
T Consensus 16 ~~Glsq~eLA~~~Gi-------s-~~~is~iE~g~~~ps~~~l~kIa~aL 57 (120)
T PRK13890 16 ERHMTKKELSERSGV-------S-ISFLSDLTTGKANPSLKVMEAIADAL 57 (120)
T ss_pred HcCCCHHHHHHHHCc-------C-HHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 456666666665421 1 23444444444 35555555554443
No 70
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=26.82 E-value=7.9e+02 Score=26.09 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=47.0
Q ss_pred hHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCC
Q 013306 254 TGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKT 333 (445)
Q Consensus 254 aarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~ 333 (445)
|+|+++-.+ |+-++-..|.-|..--+|--|-....+-+.++ +++..-..+.+++.++=..| ||-.+-..
T Consensus 231 TarlA~~~g-Dp~la~icg~IAaDE~rHe~fY~~iV~~~le~--------dPd~tm~Aiadmm~~ki~MP--a~~m~dg~ 299 (390)
T PLN00179 231 TARLAKEHG-DAKLAKICGTIAADEKRHETAYTRIVEKLFEI--------DPDGAVLAFADMMRKKITMP--AHLMYDGR 299 (390)
T ss_pred HHHHHHhcC-ChHHHHHHHHHhccHHHHHHHHHHHHHHHHhh--------CccHHHHHHHHHHHhcCCCC--cccCCCCC
Confidence 455555443 55544444444446677754444444333332 45666666778887777788 47777777
Q ss_pred Ccc-HHHHHHHHHhh
Q 013306 334 DPR-YTCQREFALKH 347 (445)
Q Consensus 334 DPR-a~~L~~~a~~~ 347 (445)
||. ++..-..+.+.
T Consensus 300 d~~lF~~fsavaqr~ 314 (390)
T PLN00179 300 DDNLFDHFSAVAQRL 314 (390)
T ss_pred cchHHHHHHHHHHHh
Confidence 875 44444444444
No 71
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=26.34 E-value=1e+02 Score=25.03 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCC
Q 013306 123 PEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (445)
Q Consensus 123 fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~l 154 (445)
.|-|-||+-.|+..|.+|.-.+-+.|-+.+.+
T Consensus 32 selVdWL~~~~~~~~R~eAv~~gq~Ll~~g~i 63 (81)
T cd04448 32 KELVNWLIRQGKAATRVQAIAIGQALLDAGWI 63 (81)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCE
Confidence 57889999999999999999999988877643
No 72
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=24.02 E-value=2.4e+02 Score=29.91 Aligned_cols=61 Identities=18% Similarity=0.178 Sum_probs=48.2
Q ss_pred CHHHHHHHHHhCCCCCH-HHHHHHHHHHHhhc--CCcHHHHHHHHcCCCCCChHHHHHHHHHHh
Q 013306 122 LPEGLLWLLLTGKVPSK-EQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMAL 182 (445)
Q Consensus 122 ~fEev~~LLl~G~lPt~-~e~~~f~~~l~~~~--~lp~~v~~~i~~lP~~~hPM~~l~~av~aL 182 (445)
++-+.|..+|+|+.|++ .+.+.|...|--+. .++.......-.-..-++|-.-+.+||++|
T Consensus 163 s~a~nfL~ml~g~~p~~~~~~~a~d~~LiL~ADHe~NASTftarvvaST~sd~ys~i~agi~aL 226 (390)
T COG0372 163 SYAENFLYMLFGEPPSPPVEARAMDRALILHADHELNASTFTARVVASTGSDLYACIAAGIGAL 226 (390)
T ss_pred cHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHhccCCCcHHHHHHHHHhcCCcHHHHHHHHHHHc
Confidence 58899999999999994 89999998886554 366665555544455678989999999999
No 73
>PF03461 TRCF: TRCF domain; InterPro: IPR005118 This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by the transcription-repair-coupling factor (TRCF) which releases RNAP and the truncated transcript.; GO: 0003684 damaged DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0006281 DNA repair; PDB: 2QSR_A 2EYQ_A.
Probab=23.35 E-value=1.1e+02 Score=25.79 Aligned_cols=30 Identities=30% Similarity=0.539 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHHHhh-cCCcHHHHHHHH
Q 013306 134 KVPSKEQVDGLSKELRDR-ATVPDYVYKAID 163 (445)
Q Consensus 134 ~lPt~~e~~~f~~~l~~~-~~lp~~v~~~i~ 163 (445)
.+-|.+|++++..+|..+ +.+|+.|.+++.
T Consensus 28 ~~~~~~el~~l~~El~DRFG~~P~ev~~L~~ 58 (101)
T PF03461_consen 28 SAESEEELEDLREELIDRFGPLPEEVENLLE 58 (101)
T ss_dssp C--SHHHHHHHHHHHHHHH-S--HHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 346889999999999887 689999998875
No 74
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.95 E-value=3.2e+02 Score=25.82 Aligned_cols=80 Identities=11% Similarity=0.177 Sum_probs=44.3
Q ss_pred CCCCCccHHHHHHHHHhhCCC-ChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhh
Q 013306 330 LRKTDPRYTCQREFALKHLPD-DPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSR 408 (445)
Q Consensus 330 yr~~DPRa~~L~~~a~~~~~~-~~~~~la~~le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR 408 (445)
.+++|||+.-++++..++-.. +++-+++.++.+--.++. +.-.=.|..|..+|-.++++-.+|=.++.
T Consensus 9 ~~~~d~eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~-----------~~~~efg~~~~~ls~~E~~L~~~L~~~~~ 77 (200)
T cd07624 9 LKNRSPEFDKMNEYLTLFGEKLGTIERISQRIHKERIEYF-----------DELKEYSPIFQLWSASETELAPLLEGVSS 77 (200)
T ss_pred hcCCCccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 467999999999999887322 344444444333222211 11122345566677666555555555555
Q ss_pred hhHHHHHHHHHH
Q 013306 409 SLGICSQLIWDR 420 (445)
Q Consensus 409 ~~GwlAH~ieq~ 420 (445)
+++=++-.....
T Consensus 78 ~~~~~~~~~~~l 89 (200)
T cd07624 78 AVERCTAALEVL 89 (200)
T ss_pred HHHHHHHHHHHH
Confidence 555555544444
No 75
>PHA02146 hypothetical protein
Probab=21.33 E-value=1.2e+02 Score=24.36 Aligned_cols=58 Identities=21% Similarity=0.172 Sum_probs=33.3
Q ss_pred HHHHHhhCCccccceeecccccCccCcceeeeecceecCCCCeeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCC
Q 013306 56 KKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKV 135 (445)
Q Consensus 56 k~l~~~~g~~~~g~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~l 135 (445)
.+|.++||-+.--+++|++ +|.+..|+-||.+-.-.-..... -| + +-+-||+.|+-
T Consensus 15 ~rf~~ehgi~ng~ef~v~~-----------------~d~dgd~~s~~iswng~dg~s~~-----ap-~-~gwall~~g~~ 70 (86)
T PHA02146 15 ERFMAEHGITNGTEFTVTN-----------------IDDDGDLYTYDISWNGRDGKSAF-----AP-S-EGWALLLNGRN 70 (86)
T ss_pred HHHHHHhCcCCCcEEEeec-----------------cccCCCeEeecccccCccCCccc-----Cc-c-hhHHHHhcccc
Confidence 4677899977666777765 45433367777664433333221 12 2 33557888875
Q ss_pred CC
Q 013306 136 PS 137 (445)
Q Consensus 136 Pt 137 (445)
-+
T Consensus 71 ~~ 72 (86)
T PHA02146 71 GN 72 (86)
T ss_pred CC
Confidence 33
No 76
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=20.98 E-value=91 Score=26.84 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=16.2
Q ss_pred hCCCCCHHHHHHHHHHHHh
Q 013306 132 TGKVPSKEQVDGLSKELRD 150 (445)
Q Consensus 132 ~G~lPt~~e~~~f~~~l~~ 150 (445)
.|.|||.+|++.|-+...+
T Consensus 69 ~g~lPt~~eVe~Fl~~v~~ 87 (105)
T PF09702_consen 69 VGYLPTDEEVEDFLDDVER 87 (105)
T ss_pred cCCCCChHHHHHHHHHHHH
Confidence 5999999999999888654
No 77
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=20.11 E-value=86 Score=24.77 Aligned_cols=23 Identities=43% Similarity=0.826 Sum_probs=20.3
Q ss_pred ChhhHHHHHHHHHhCC--CcccccC
Q 013306 304 TTEQLKDYVWKTLNSG--KVVPGFG 326 (445)
Q Consensus 304 ~~~~~~~~v~~~l~~g--~~IpGfG 326 (445)
+.++++++|.+..++| +-+||.|
T Consensus 15 s~~el~~~I~daI~sgEE~~LPGLG 39 (65)
T PF14098_consen 15 SKEELKDTIEDAIQSGEEKALPGLG 39 (65)
T ss_pred CHHHHHHHHHHHHhccchhcCCchH
Confidence 6889999999999876 5899998
Done!