Query 013306
Match_columns 445
No_of_seqs 258 out of 1373
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 08:06:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1csh_A Citrate synthase; lyase 100.0 4E-114 1E-118 896.9 44.1 406 38-443 2-434 (435)
2 3hwk_A Methylcitrate synthase; 100.0 4.6E-98 2E-102 770.0 34.1 358 54-437 25-406 (414)
3 2h12_A Citrate synthase; acido 100.0 3.9E-97 1E-101 769.3 32.3 354 55-436 38-425 (436)
4 3msu_A Citrate synthase; helix 100.0 2.2E-96 8E-101 760.0 34.0 347 67-436 46-422 (427)
5 2p2w_A Citrate synthase; trans 100.0 6.6E-96 2E-100 747.0 32.4 339 74-436 1-352 (367)
6 3l96_A Citrate synthase; quate 100.0 2.8E-97 1E-101 767.3 22.0 353 55-436 31-415 (426)
7 2c6x_A Citrate synthase 1; tri 100.0 1.1E-95 4E-100 744.0 31.9 342 76-436 2-358 (363)
8 2ibp_A Citrate synthase; disul 100.0 2.9E-95 1E-99 750.5 32.8 351 61-436 9-398 (409)
9 3tqg_A 2-methylcitrate synthas 100.0 2.4E-95 8E-100 743.3 30.0 340 68-436 3-363 (375)
10 3o8j_A 2-methylcitrate synthas 100.0 3.9E-95 1.3E-99 746.8 31.1 348 63-436 18-392 (404)
11 1o7x_A Citrate synthase; lyase 100.0 2E-94 6.9E-99 738.3 31.9 337 77-436 6-366 (377)
12 1vgm_A 378AA long hypothetical 100.0 5.4E-94 1.8E-98 735.4 31.3 337 77-436 7-367 (378)
13 1iom_A Citrate synthase; open 100.0 2.6E-93 8.9E-98 730.1 36.0 338 77-436 5-365 (377)
14 1aj8_A Citrate synthase; hyper 100.0 1.9E-93 6.5E-98 729.8 34.4 337 76-436 2-359 (371)
15 1a59_A Citrate synthase; cold- 100.0 2.6E-93 8.9E-98 731.1 34.4 342 75-436 5-372 (378)
16 1vgp_A 373AA long hypothetical 100.0 8.1E-94 2.8E-98 733.3 30.0 339 75-436 3-362 (373)
17 2ifc_A Citrate synthase; oxalo 100.0 1.3E-93 4.4E-98 734.2 31.5 339 75-436 7-373 (385)
18 3tqg_A 2-methylcitrate synthas 55.3 32 0.0011 34.7 8.2 61 121-183 153-217 (375)
19 1a59_A Citrate synthase; cold- 45.9 55 0.0019 32.9 8.2 61 122-182 154-216 (378)
20 1aj8_A Citrate synthase; hyper 45.0 65 0.0022 32.3 8.5 61 122-182 151-213 (371)
21 2ifc_A Citrate synthase; oxalo 45.0 66 0.0023 32.4 8.6 62 122-183 156-219 (385)
22 1iom_A Citrate synthase; open 44.9 58 0.002 32.7 8.2 61 122-182 152-214 (377)
23 3o8j_A 2-methylcitrate synthas 44.6 66 0.0022 32.7 8.5 62 120-183 181-246 (404)
24 3hwk_A Methylcitrate synthase; 44.3 43 0.0015 34.2 7.2 62 121-184 195-260 (414)
25 4ay7_A Methylcobalamin\: coenz 43.3 25 0.00085 34.4 5.1 44 304-347 302-346 (348)
26 2ibp_A Citrate synthase; disul 43.3 71 0.0024 32.5 8.6 62 122-183 182-245 (409)
27 1vgp_A 373AA long hypothetical 42.9 72 0.0025 32.0 8.5 61 122-182 148-210 (373)
28 1vgm_A 378AA long hypothetical 42.5 77 0.0026 31.8 8.6 62 122-183 152-215 (378)
29 3u5c_P 40S ribosomal protein S 37.9 12 0.00042 32.6 1.7 23 98-130 15-37 (142)
30 3j20_T 30S ribosomal protein S 35.9 12 0.00041 32.3 1.2 22 98-129 6-27 (132)
31 2c6x_A Citrate synthase 1; tri 33.8 95 0.0033 31.0 7.7 62 122-183 145-208 (363)
32 2xzm_S RPS15E; ribosome, trans 30.2 17 0.00059 31.8 1.3 13 98-110 11-23 (144)
33 1o7x_A Citrate synthase; lyase 27.8 1.5E+02 0.0051 29.7 7.9 60 122-183 151-214 (377)
34 3iz6_R 40S ribosomal protein S 25.8 14 0.00049 32.6 0.0 22 98-129 24-45 (154)
35 2eja_A URO-D, UPD, uroporphyri 22.9 80 0.0028 30.4 4.8 44 304-347 287-335 (338)
36 1r3s_A URO-D, uroporphyrinogen 22.0 63 0.0022 31.7 3.8 44 304-347 313-360 (367)
37 2qsr_A Transcription-repair co 21.6 78 0.0027 28.1 4.0 38 126-163 28-69 (173)
No 1
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Probab=100.00 E-value=4.3e-114 Score=896.93 Aligned_cols=406 Identities=61% Similarity=1.079 Sum_probs=381.7
Q ss_pred hhHHHHHHhhChhhHHHHHHHHHhhCCccccceeecccccCccCcceeeeecceecCCCCeeecCCCHHHHhhhCCCCCC
Q 013306 38 LDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKP 117 (445)
Q Consensus 38 ~~lk~~~~~~ip~~~~~~k~l~~~~g~~~~g~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~ 117 (445)
++|||+++++||.+++.+|+|+++||++++|++|+|++++||+|+++++|+||+||+++||+||||+|+||++++|++++
T Consensus 2 ~~lk~~~~~~i~~~~~~~~~~~~~~g~~~~~~~t~~~~~~Gl~g~~~~~t~Is~id~~~Gl~YRGy~I~dLa~~~~~~~~ 81 (435)
T 1csh_A 2 TNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGIRFRGFSIPECQKLLPKAGG 81 (435)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHTTTTTCCCCCCCSEEEETTTEEEETTEEHHHHHHHSCBCTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccCcCCCeeeeeeeeEEcCCCCeeECCccHHHHHhhCccccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999998878
Q ss_pred CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCcHHHHHHHHcCCCCCChHHHHHHHHHHhccCChhHHHHHhh--
Q 013306 118 DGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKG-- 195 (445)
Q Consensus 118 ~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~~~y~~~-- 195 (445)
+.+++||||+||||+|+|||++|+++|+++|.+++.+|++|.++|+++|+++|||++|+++|++|+++++|+..|..+
T Consensus 82 ~~~~~feev~yLLl~G~LPt~~el~~f~~~l~~~~~lp~~v~~~i~~~p~~~hPM~~l~~~v~aL~~~~~f~~~~~~~~~ 161 (435)
T 1csh_A 82 GEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIN 161 (435)
T ss_dssp CCSBCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHGGGGCHHHHHHHTTCC
T ss_pred CCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCccCChHHHHHHHHHHHhhcccccccccccCC
Confidence 888899999999999999999999999999999999999999999999999999999999999999988776666432
Q ss_pred ---------------hhhhh-----hh----cCC-cccCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCC
Q 013306 196 ---------------IHKSK-----IY----KDG-KIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNV 250 (445)
Q Consensus 196 ---------------~~k~~-----~~----~~g-~~~~p~~~l~~a~Nfl~ml~~~~~~~~~~l~~~LiLhADHeg~N~ 250 (445)
+++.+ .| .+| .+++|++++||++||++||+++++.++++||++|||||||||+|+
T Consensus 162 ~~~~~~~~~~~a~~LiAk~p~iaa~~yr~~~~~~~~~i~p~~~ls~a~nfl~ml~~p~~~~~~~ld~~LiLhADHeg~N~ 241 (435)
T 1csh_A 162 RTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNV 241 (435)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCCTTSCHHHHHHHHHTCCCHHHHHHHHHHHHHTSCCCSCSH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCCCHHHHHHHHhcCCChHHHHHHHHHHHHccCCCCCch
Confidence 23333 12 234 478999999999999999999999999999999999999977999
Q ss_pred chhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCC
Q 013306 251 SAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVL 330 (445)
Q Consensus 251 STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vy 330 (445)
||||+||++||++|+|+|++|||++|+||+||||||+|++||.++.++||++.+++++++||++.+++|++|||||||||
T Consensus 242 STftaRvvaSt~ad~ysavaagi~aL~GplHGGAne~v~~ml~~i~~~ig~~~~~~~~~~~v~~~l~~g~~i~GfGHrVy 321 (435)
T 1csh_A 242 SAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVL 321 (435)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHTTCCCTTBCCSSC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhccCCcccChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCceecCCcccc
Confidence 99999999999999999999999999999999999999999999988898766789999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhh
Q 013306 331 RKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSL 410 (445)
Q Consensus 331 r~~DPRa~~L~~~a~~~~~~~~~~~la~~le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~ 410 (445)
|+.|||+++|+++|+++.+++++++++.+||+++++++.++++.|++|||||||+|++|++||||+.++||+||++||++
T Consensus 322 k~~DPRa~~L~~~a~~l~~~~~~~~~a~~le~~a~~~l~~~~~~k~l~pNVDf~sg~i~~~lGipp~~~ft~lFaisR~~ 401 (435)
T 1csh_A 322 RKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRAL 401 (435)
T ss_dssp CSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHTCCSCCSBCTHHHHHHHHHHTTCCCGGGHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHcCCChhhcccchhhhhhhH
Confidence 99999999999999999888999999999999999988888999999999999999999999995459999999999999
Q ss_pred HHHHHHHHHHHcCCCcccCcccchHHHHHHhhh
Q 013306 411 GICSQLIWDRALGLPLERPKSVTLDWIEKNCKK 443 (445)
Q Consensus 411 GwlAH~ieq~~~~~pI~RP~s~~~~~~~~~~~~ 443 (445)
||+||++||++++.||+||+|+|+++++++|+.
T Consensus 402 Gw~AH~~Eq~~~~~~I~RP~~~y~~~~~~~~~~ 434 (435)
T 1csh_A 402 GVLAQLIWSRALGFPLERPKSMSTAGLEKLSAG 434 (435)
T ss_dssp HHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCCCCcCcHHHhhHHHHHHhcC
Confidence 999999999999988999999999999999863
No 2
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4.6e-98 Score=770.00 Aligned_cols=358 Identities=21% Similarity=0.291 Sum_probs=310.4
Q ss_pred HHHHHHHhhCCccccceeecc---cccCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHH
Q 013306 54 RLKKVKSELGKAQLGNITVDM---VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWL 129 (445)
Q Consensus 54 ~~k~l~~~~g~~~~g~~tv~~---~~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~L 129 (445)
.+|.+|++||.+++++.|+|+ +.+||+|+.+++|+||+||+++| ++||||+|+||+++. +||||+||
T Consensus 25 ~~~~~~~~~~~~~~~~~~~d~~~~~~~Gl~gv~~~~t~Is~idg~~G~L~YRGy~I~dLa~~~---------~fEevayL 95 (414)
T 3hwk_A 25 PLAAARSVAATKSMTAPTVDERPDIKKGLAGVVVDTTAISKVVPQTNSLTYRGYPVQDLAARC---------SFEQVAFL 95 (414)
T ss_dssp -----------------------CCCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHH
T ss_pred eHHHHHHhhCCcccCCccccCCCCCCCCCCCCeeeeeeceEEeCCCCEEEECCeEHHHHHhcC---------CHHHHHHH
Confidence 467889999999999999999 88999999999999999999999 799999999999985 59999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHhhcCCcHHHHHHHHcCCCCCChHHHHHHHHHHhccCChh----HHHHHhh---hhhhh--
Q 013306 130 LLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEF----QEAYEKG---IHKSK-- 200 (445)
Q Consensus 130 Ll~G~lPt~~e~~~f~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~----~~~y~~~---~~k~~-- 200 (445)
||+|+|||++|+++|+++|.+++.||+++.++|++||+++|||++|+++|++|+++++. ...++++ +++.+
T Consensus 96 Ll~G~LPt~~el~~f~~~l~~~~~lp~~v~~~i~~~p~~~hPM~~l~~~vsaL~~~~~~~~~~~~~~~~a~rLiAk~pti 175 (414)
T 3hwk_A 96 LWRGELPTDAELALFSQRERASRRVDRSMLSLLAKLPDNCHPMDVVRTAISYLGAEDPDEDDAAANRAKAMRMMAVLPTI 175 (414)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHHHHTCTTTTCGGGHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCCcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987532 2233333 45555
Q ss_pred -----hhcCCc-ccCCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHH
Q 013306 201 -----IYKDGK-IIPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAA 272 (445)
Q Consensus 201 -----~~~~g~-~~~p~~~l~~a~Nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAg 272 (445)
+++.|. +++|++++||++||++||++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++||
T Consensus 176 ~a~~yr~~~g~~~~~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe-~NaST~taRvvaSt~ad~ysavaag 254 (414)
T 3hwk_A 176 VAIDMRRRRGLPPIAPHSGLGYAQNFLHMCFGEVPETAVVSAFEQSMILYAEHG-FNASTFAARVVTSTQSDIYSAVTGA 254 (414)
T ss_dssp HHHHHHHHTTCCCCCCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCS-SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCccccHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCC-CChHHHHHHHHHhcCCCHHHHHHHH
Confidence 234666 88999999999999999976 68889999999999999999 8999999999999999999999999
Q ss_pred HhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhh---CC
Q 013306 273 LNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKH---LP 349 (445)
Q Consensus 273 l~aL~GPlHGgA~~~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~---~~ 349 (445)
|++|+||+||||||+|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++ .+
T Consensus 255 i~aL~GplHGGAne~v~~ml~ei----~---~~~~~~~~v~~~l~~~~~I~GFGHrVyk~~DPRa~~L~~~a~~l~~~~g 327 (414)
T 3hwk_A 255 IGALKGRLHGGANEAVMHDMIEI----G---DPANAREWLRAKLARKEKIMGFGHRVYRHGDSRVPTMKRALERVGTVRD 327 (414)
T ss_dssp HHHHTSTTTTHHHHHHHHHHHHH----C---SGGGHHHHHHHHHHTTCCCTTBCCSSCSSCCTTHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCccCChHHHHHHHHHHh----C---CchHHHHHHHHHHhcCCCccCCCCCCCCCCCccHHHHHHHHHHHHHhcC
Confidence 99999999999999999999886 5 46899999999999999999999999999999999999999974 56
Q ss_pred CChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccC
Q 013306 350 DDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERP 429 (445)
Q Consensus 350 ~~~~~~la~~le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP 429 (445)
++++++++.+||+++.+ .|+++||||||+|++|++||||. ++||+||++||++||+||++||+..+ +|+||
T Consensus 328 ~~~~~~~a~~le~~~~~-------~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFaisR~~Gw~AH~~Eq~~~~-riiRP 398 (414)
T 3hwk_A 328 GQRWLDIYQVLAAEMAS-------ATGILPNLDFPTGPAYYLMGFDI-ASFTPIFVMSRITGWTAHIMEQATAN-ALIRP 398 (414)
T ss_dssp CHHHHHHHHHHHHHHHH-------HHCCCBCTHHHHHHHHHHHTCCG-GGHHHHHHHHHHHHHHHHHHHHHHSC-CCCCC
T ss_pred CCHHHHHHHHHHHHHHH-------hcCCCCchHHHHHHHHHHhCCCH-HHHHHHHHHHhHHHHHHHHHHHHhcC-CCcCC
Confidence 78999999999999865 37999999999999999999995 99999999999999999999999877 79999
Q ss_pred cccchHHH
Q 013306 430 KSVTLDWI 437 (445)
Q Consensus 430 ~s~~~~~~ 437 (445)
++.|+|.-
T Consensus 399 r~~Y~G~~ 406 (414)
T 3hwk_A 399 LSAYCGHE 406 (414)
T ss_dssp EEEECSCC
T ss_pred CceeeCCC
Confidence 99999853
No 3
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti}
Probab=100.00 E-value=3.9e-97 Score=769.34 Aligned_cols=354 Identities=28% Similarity=0.429 Sum_probs=320.0
Q ss_pred HHHHHHhhCCccccceeecccccCccCcceeeeecceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhC
Q 013306 55 LKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTG 133 (445)
Q Consensus 55 ~k~l~~~~g~~~~g~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G 133 (445)
+++++++ .|.+|+| +||+|+++++|+||+||+++|+ +||||+|+||+++. +||||+||||+|
T Consensus 38 ~~~l~~~-----~g~~t~~---~Gl~g~~~~~S~Is~idg~~G~L~YRGy~I~dLa~~~---------~feEvayLLl~G 100 (436)
T 2h12_A 38 IRKLPAQ-----LGVFTFD---PGYGETAACNSKITFIDGDKGVLLHRGYPIAQLAENA---------SYEEVIYLLLNG 100 (436)
T ss_dssp CTTHHHH-----HSCEEEC---TTCTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHS
T ss_pred ehhhccc-----CCcEeeC---CccCCCeeeeeeceEEeCCCCEEEECCeEHHHHHhcC---------CHHHHHHHHHcC
Confidence 5667665 4688998 7999999999999999999995 99999999999985 599999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcHHHHHHHHcCCCCCChHHHHHHHHHHhccCChhH-------HHHHhh---hhhhh---
Q 013306 134 KVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQ-------EAYEKG---IHKSK--- 200 (445)
Q Consensus 134 ~lPt~~e~~~f~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~-------~~y~~~---~~k~~--- 200 (445)
+|||++|+++|+++|.+++.+|+++.++++.+|+++|||++|+++|++|+++++.. ..+.++ +++.+
T Consensus 101 ~LPt~~el~~f~~~l~~~~~lp~~v~~~~~~~p~~~hPM~~l~~~v~aL~~~~~~~~~~~~~~~~~~~a~rLiAk~ptia 180 (436)
T 2h12_A 101 ELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGALSAFYPDANDIAIPANRDLAAMRLIAKIPTIA 180 (436)
T ss_dssp SCCCHHHHHHHHHHHHTTCSCCGGGHHHHTTSCTTCCHHHHHHHHHHHHGGGCC--------CCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCcccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999874321 112222 45554
Q ss_pred ----hhcCCc-ccCCCCCCCHHHHHHHHhCC-------CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHH
Q 013306 201 ----IYKDGK-IIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLS 268 (445)
Q Consensus 201 ----~~~~g~-~~~p~~~l~~a~Nfl~ml~~-------~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~a 268 (445)
+++.|+ +++|++++||++||++|+++ +++..+++||++|||||||| +|+||||+||++||++|+|+|
T Consensus 181 a~~yr~~~g~~~~~p~~~ls~a~nfl~ml~g~~~~~~~~~~~~~~~ld~~LiLhADHe-~NaSTftaRvvaSt~ad~ysa 259 (436)
T 2h12_A 181 AWAYKYTQGEAFIYPRNDLNYAENFLSMMFARMSEPYKVNPVLARAMNRILILHADHE-QNASTSTVRLAGSTGANPFAC 259 (436)
T ss_dssp HHHHHHHHTCCCCCCCTTSCHHHHHHHHHHCBTTBCCCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHhcCCCCCCCCCCCCHHHHHHHHhcCCCCccCCCCHHHHHHHHhhheeecCCC-CchHHHHHHHHHhcCccHHHH
Confidence 344566 78999999999999999975 67899999999999999998 899999999999999999999
Q ss_pred HHHHHhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC--CcccccCCCCCCCCCccHHHHHHHHHh
Q 013306 269 FAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSG--KVVPGFGHGVLRKTDPRYTCQREFALK 346 (445)
Q Consensus 269 vsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g--~~IpGfGH~vyr~~DPRa~~L~~~a~~ 346 (445)
++|||++|+||+||||||+|++||++| | +++++++||++.++++ ++||||||||||+.|||+++|+++|++
T Consensus 260 iaAgi~aL~GPlHGGAne~v~~ml~ei----~---~~~~v~~~i~~~l~~~~g~~imGFGHrVYk~~DPRa~iLk~~a~~ 332 (436)
T 2h12_A 260 IAAGIAALWGPAHGGANEAVLKMLARI----G---KKENIPAFIAQVKDKNSGVKLMGFGHRVYKNFDPRAKIMQQTCHE 332 (436)
T ss_dssp HHHHHHHHHSTTTTTHHHHHHHHHHHH----C---SGGGHHHHHHHHHCTTSCCCCTTBCCSSCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCccCCHHHHHHHHHHHh----c---CchHHHHHHHHHHhccCCCcccCCCccccCCCCCcHHHHHHHHHH
Confidence 999999999999999999999999986 5 5789999999999955 999999999999999999999999998
Q ss_pred h---CC--CChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHH
Q 013306 347 H---LP--DDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRA 421 (445)
Q Consensus 347 ~---~~--~~~~~~la~~le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~ 421 (445)
+ .+ ++++++++.+||+++.+ +++|+.|++|||||||+|++|++||||. ++||+||++||++||+||++||+.
T Consensus 333 l~~~~g~~~~~~~~la~~lE~~al~--~~~~~~k~l~pNVDfysg~i~~~lGiP~-~~ft~lFaisR~~GW~AH~~Eq~~ 409 (436)
T 2h12_A 333 VLTELGIKDDPLLDLAVELEKIALS--DDYFVQRKLYPNVDFYSGIILKAMGIPT-SMFTVLFAVARTTGWVSQWKEMIE 409 (436)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHH--SHHHHHTTCCBCTHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHh--hhhccccCCCcChHHHHHHHHHHhCCCh-hhhhhhhhhhccccHHHHHHHHHh
Confidence 7 24 78999999999999854 4577789999999999999999999996 999999999999999999999999
Q ss_pred cC-CCcccCcccchHH
Q 013306 422 LG-LPLERPKSVTLDW 436 (445)
Q Consensus 422 ~~-~pI~RP~s~~~~~ 436 (445)
.+ .+|+||+++|+|.
T Consensus 410 ~~~~kI~RPr~~Y~G~ 425 (436)
T 2h12_A 410 EPGQRISRPRQLYIGA 425 (436)
T ss_dssp STTCCCCCCEEEECSC
T ss_pred CCCCceecccccccCC
Confidence 87 4699999999986
No 4
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis}
Probab=100.00 E-value=2.2e-96 Score=760.04 Aligned_cols=347 Identities=29% Similarity=0.422 Sum_probs=309.1
Q ss_pred ccceeecccccCccCcceeeeecceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHH
Q 013306 67 LGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLS 145 (445)
Q Consensus 67 ~g~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~ 145 (445)
+|.+|+|. |+.|+.+++|+||+||+++|+ +||||+|+||+++. +||||+||||+|+|||++|+++|+
T Consensus 46 ~G~~t~d~---Gl~~~~~~~s~is~iDg~~G~L~YRGy~I~dLa~~~---------~feevayLLl~G~LPt~~el~~f~ 113 (427)
T 3msu_A 46 HGIFTYDP---GFMSTAACESKITYIDGGKGVLLHRGYPIEEWTQKS---------NYRTLCYALIYGELPTDEQVKSFR 113 (427)
T ss_dssp GTEEEECT---TCTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred CCCEeeCC---CcCCceEEEEEeeEEeCCCCEEEECCeEHHHHhccC---------CHHHHHHHHHcCcCCCHHHHHHHH
Confidence 58999996 999999999999999999995 99999999999985 699999999999999999999999
Q ss_pred HHHHhhcCCcHHHHHHHHcCCCCCChHHHHHHHHHHhccCCh----hHHHHHhh---hhhhh-------hhcCCc-ccCC
Q 013306 146 KELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSE----FQEAYEKG---IHKSK-------IYKDGK-IIPK 210 (445)
Q Consensus 146 ~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~----~~~~y~~~---~~k~~-------~~~~g~-~~~p 210 (445)
++|.+++.||+++.++|++||+++|||++|+++|++|++++. ....+.++ ++|.+ +++.|+ +++|
T Consensus 114 ~~l~~~~~lp~~~~~~i~~~p~~~hPM~~L~~~v~aL~~~~~~~~~~~~~~~~a~rLiAk~pti~a~~yr~~~G~~~~~p 193 (427)
T 3msu_A 114 QEIINKMPVCEHVKAAIAAMPQHTHPMSSLIAGVNVLAAEHIHNGQKESQDEVAKNIVAKIATIAAMAYRHNHGKKFLEP 193 (427)
T ss_dssp HHHHHHCCCCHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 999999999999999999999999999999999999987531 11122222 55555 345777 7899
Q ss_pred CCCCCHHHHHHHHhCCC------ChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhcccccccccc
Q 013306 211 DDSLDYGGNFSHMLGFD------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLA 284 (445)
Q Consensus 211 ~~~l~~a~Nfl~ml~~~------~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA 284 (445)
++++||++||++||++. ++..+++||++|||||||| +|+||||+||++||++|+|+|++|||++|+||+||||
T Consensus 194 ~~~ls~a~NfL~ml~~~~~~~~p~~~~~~~ld~~LiLhADHe-~N~ST~taRvvaSt~ad~ysavaAgi~aL~GPlHGGA 272 (427)
T 3msu_A 194 KMEYGYAENFLYMMFADDESYKPDELHIKAMDTIFMLHADHE-QNASTSTVRLSGSTGNSPYAAIIAGITALWGPAHGGA 272 (427)
T ss_dssp CTTSCHHHHHHHHHHCSSTTCCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHTSHHHHCH
T ss_pred CCccCHHHHHHHHHhcccccCCCCHHHHHHHHHHHhhccCCC-CChhHHHHHHHHccCCCHHHHHHHHHHHccCCccCCH
Confidence 99999999999999753 7889999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCC--cccccCCCCCCCCCccHHHHHHHHHhh-----CCCChHHHHH
Q 013306 285 NQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGK--VVPGFGHGVLRKTDPRYTCQREFALKH-----LPDDPLFQLV 357 (445)
Q Consensus 285 ~~~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~--~IpGfGH~vyr~~DPRa~~L~~~a~~~-----~~~~~~~~la 357 (445)
||+|++||+++ + +++++++||++.+++++ +||||||||||+.|||+++|+++|+++ .+++++++++
T Consensus 273 ne~v~~ml~ei----~---~~~~~~~~v~~~l~~~~~~~i~GFGHrVYk~~DPRa~~Lk~~a~~l~~~~g~~~~~~~~la 345 (427)
T 3msu_A 273 NEAVLKMLSEI----G---STENIDKYIAKAKDKDDPFRLMGFGHRVYKNTDPRATAMKKNCEEILAKLGHSDNPLLTVA 345 (427)
T ss_dssp HHHHHHHHHHH----C---STTHHHHHHHHHHTC-----CCSBCCSSSSSCCHHHHHHHHHTHHHHHHGGGCSSHHHHHH
T ss_pred HHHHHHHHHHh----c---CchHHHHHHHHHHhCCCCcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 99999999886 5 45799999999999999 999999999999999999999999875 2378999999
Q ss_pred HHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcC-CCcccCcccchHH
Q 013306 358 SKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALG-LPLERPKSVTLDW 436 (445)
Q Consensus 358 ~~le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~-~pI~RP~s~~~~~ 436 (445)
.+||+++.+ +++++.|++|||||||+|+++++||||. ++||+||++||++||+||++||+..+ .+|+||+|+|+|.
T Consensus 346 ~~le~~a~~--d~~~~~k~l~pNVDfysg~i~~~lGip~-~~ft~lFaisR~~Gw~AH~~Eq~~~p~~rI~RPr~~Y~G~ 422 (427)
T 3msu_A 346 KKLEEIALQ--DEFFIERKLFSNVDFYSGIILKAMGIPE-DMFTAIFALARTSGWISQWIEMVNDPAQKIGRPRQLYTGA 422 (427)
T ss_dssp HHHHHHHC--------CCCCCBCHHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCEEEECSC
T ss_pred HHHHHHHhh--cccccccCCCCChHHHHHHHHHHcCCCc-cccceehhHHhHHHHHHHHHHHHhCCCCceeCCCceecCC
Confidence 999999987 6888999999999999999999999995 99999999999999999999999873 5799999999975
No 5
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=6.6e-96 Score=746.95 Aligned_cols=339 Identities=27% Similarity=0.400 Sum_probs=306.5
Q ss_pred ccccCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc
Q 013306 74 MVIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA 152 (445)
Q Consensus 74 ~~~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~ 152 (445)
|+.+||+|+++++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||++|+++|+++|..++
T Consensus 1 ~~~~Gl~g~~~~~T~Is~id~~~G~L~YRGy~i~dLa~~~---------~feeva~LLl~G~lPt~~el~~f~~~l~~~~ 71 (367)
T 2p2w_A 1 MIQKGLEGVKICESSICYLDGINGRLYYRGIPVEELAEKS---------TFEETAYFLWYGKLPTKSELEEFKRKMADYR 71 (367)
T ss_dssp CCCTTCTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHHTC
T ss_pred CCCCcCCCCeeeeeeCeEEECCCCEEEECCeeHHHHHcCC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHcc
Confidence 456899999999999999999989 799999999999986 6999999999999999999999999999999
Q ss_pred CCcHHHHHHHHcCCCCCChHHHHHHHHHHhccCCh-hHHHHHhh---hhhhh-------hhcCCc-ccCCCCCCCHHHHH
Q 013306 153 TVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSE-FQEAYEKG---IHKSK-------IYKDGK-IIPKDDSLDYGGNF 220 (445)
Q Consensus 153 ~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~-~~~~y~~~---~~k~~-------~~~~g~-~~~p~~~l~~a~Nf 220 (445)
.+|+++.++|+.+|+++|||++|+++|++|+++++ ....++++ +++.+ +++.|+ +++|++++||++||
T Consensus 72 ~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~~~~~~~~~a~~lia~~p~i~a~~y~~~~g~~~i~p~~~l~~a~nf 151 (367)
T 2p2w_A 72 ELPAEALGILYHLPKNLHYIDVLKIFLSIHGSMDGNDEDLREKAIRVASVFPTILAYYYRYSKGKELIRPRKDLSHVENF 151 (367)
T ss_dssp CCCHHHHHHHTTSCSCCCHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHH
T ss_pred CCCHHHHHHHHhCccCCChHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCHHHHH
Confidence 99999999999999999999999999999998754 22233333 45554 234565 78899999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHhcC
Q 013306 221 SHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECG 300 (445)
Q Consensus 221 l~ml~~~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig 300 (445)
++||++..+..+++||++|||||||| +|+||||+||++||++|+|+|++|||++|+||+||||||+|++||+++ +
T Consensus 152 l~ml~~~~~~~~~~ld~~LvL~ADHg-~NaSTftaRvvaSt~ad~ysavaagi~aL~GPlHGGAne~v~~ml~ei----~ 226 (367)
T 2p2w_A 152 YYMMFGERNEKIRLLESAFILLMEQD-INASTFAALVIASTLSDLYSCIVGALGALKGPLHGGASEKVPPMLEEI----G 226 (367)
T ss_dssp HHHHHSCCCTTHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHHHHHHHHHHHH----C
T ss_pred HHHhcCCChHHHHHHHHHHhHhccCC-CchHHHHHHHHHhcCccHHHHHHHHHHHccCCccCChHHHHHHHHHHh----c
Confidence 99998855888999999999999998 899999999999999999999999999999999999999999999886 5
Q ss_pred CCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCc
Q 013306 301 ENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPN 380 (445)
Q Consensus 301 ~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~~~~~~~~la~~le~~~~~~~~~~~k~k~l~pN 380 (445)
+++++++||++.+++|++||||||||||+.|||+++|+++++++.+++++++++.+||+++.+ ++ .|++|||
T Consensus 227 ---~~~~~~~~i~~~l~~~~~i~GfGHrVyk~~DPRa~~l~~~a~~~~~~~~~~~~a~~le~~~~~----~~-~k~l~pN 298 (367)
T 2p2w_A 227 ---SEDRVEEFVQKCLKEKRKIMGFGHRVYKTYDPRAVFLKRVLQEHFPDSKLFRIASKLEEYIVS----NK-IKNIYPN 298 (367)
T ss_dssp ---SGGGHHHHHHHHHHHTCCCTTBCCSSCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----TT-GGGCCBC
T ss_pred ---CchhHHHHHHHHHHcCCccccCCccccCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH----Hh-ccCCCCC
Confidence 568999999999999999999999999999999999999999986678999999999999643 44 6899999
Q ss_pred hhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchHH
Q 013306 381 VDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDW 436 (445)
Q Consensus 381 VD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~ 436 (445)
||||+|++|++||||. ++||+||++||++||+||++||+..+ +|+||++.|+|.
T Consensus 299 VDf~sg~v~~~lGip~-~~~t~lFai~R~~Gw~AH~~Eq~~~~-~iiRP~~~Y~G~ 352 (367)
T 2p2w_A 299 VDLYSSVLFEELGFPR-NMFTALFATARVVGWTAHVIEYVSDN-KLIRPTSEYVGP 352 (367)
T ss_dssp HHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHTTC-CCCCCCCCCCSC
T ss_pred hHHHHHHHHHHhCCCh-hhhhhHHHHhccccHHHHHHHHHhcC-CccCccccccCC
Confidence 9999999999999996 99999999999999999999999877 699999999985
No 6
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A
Probab=100.00 E-value=2.8e-97 Score=767.26 Aligned_cols=353 Identities=26% Similarity=0.414 Sum_probs=320.0
Q ss_pred HHHHHHhhCCccccceeecccccCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhC
Q 013306 55 LKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTG 133 (445)
Q Consensus 55 ~k~l~~~~g~~~~g~~tv~~~~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G 133 (445)
+++|++ +|.+|+|. ||.|+.+++|+||+||+++| ++||||+|+||+++. +||||+||||+|
T Consensus 31 ~~~l~~------~g~~~~d~---Gl~~~~~~~s~is~iDg~~G~L~YRGy~I~dLa~~~---------~feevayLLl~G 92 (426)
T 3l96_A 31 IRTLGS------KGVFTFDP---GFTSTTSCESKITFIDGDEGILLHRGFPIDQLATDS---------NYLEVCYILLNG 92 (426)
T ss_dssp CTTHHH------HTCCEECT---TSSSEEEEEESSEEEEGGGTEEEETTEEHHHHHHHS---------CHHHHHHHHHHS
T ss_pred eeeccc------CCcEEeCC---CCCCceEEeEEeEEEECCCCEEEECCeEHHHHHhcC---------CHHHHHHHHHCC
Confidence 455655 48999996 99999999999999999999 499999999999985 699999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcHHHHHHHHcCCCCCChHHHHHHHHHHhccCCh-------hHHHHHhh---hhhhh---
Q 013306 134 KVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSE-------FQEAYEKG---IHKSK--- 200 (445)
Q Consensus 134 ~lPt~~e~~~f~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~-------~~~~y~~~---~~k~~--- 200 (445)
+|||++|+++|+++|.+++.||+++.++|++||+++|||++|+++|++|+++++ ....+.++ ++|.+
T Consensus 93 ~LPt~~el~~f~~~l~~~~~lp~~~~~~~~~~p~~~hPM~~l~~~vsaL~~~~~~~~~~~~~~~~~~~a~rLiAk~pti~ 172 (426)
T 3l96_A 93 EKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREIAAFRLLSKMPTMA 172 (426)
T ss_dssp SCCCHHHHHHHHHHHHHTCSCCHHHHHHHTTSCTTSCHHHHHHHHHTTGGGTCGGGCCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHccCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhCcccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998642 12223333 56665
Q ss_pred ----hhcCCc-ccCCCCCCCHHHHHHHHhCC-------CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHH
Q 013306 201 ----IYKDGK-IIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLS 268 (445)
Q Consensus 201 ----~~~~g~-~~~p~~~l~~a~Nfl~ml~~-------~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~a 268 (445)
+++.|+ +++|++++||++||++||++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|
T Consensus 173 a~~yr~~~G~~~~~p~~~ls~a~nfl~ml~g~~~~~~~p~~~~~~~ld~~LiLhADHe-~N~ST~taRvvaSt~ad~ysa 251 (426)
T 3l96_A 173 AMCYKYSIGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHE-QNASTSTVRTAGSSGANPFAC 251 (426)
T ss_dssp HHHHHHHHTCCCCCCCTTSCHHHHHHHHHHCBTTBCCCCCHHHHHHHHHHHHTTSCCS-SCHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHhcCCCcccCCCCHHHHHHHHHHHhhcccCC-CCchHHHHHHHhccCCcHHHH
Confidence 345677 78999999999999999965 37889999999999999999 899999999999999999999
Q ss_pred HHHHHhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCC--cccccCCCCCCCCCccHHHHHHHHHh
Q 013306 269 FAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGK--VVPGFGHGVLRKTDPRYTCQREFALK 346 (445)
Q Consensus 269 vsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~--~IpGfGH~vyr~~DPRa~~L~~~a~~ 346 (445)
++|||++|+||+||||||+|++||+++ + +++++++||++.+++++ +||||||||||+.|||+++|+++|++
T Consensus 252 iaAgi~aL~GplHGGAne~v~~ml~~i----~---~~~~~~~~v~~~l~~~~~~~I~GfGHrVyk~~DPRa~~l~~~a~~ 324 (426)
T 3l96_A 252 IAAGIASLWGPAHGGANEAALKMLEEI----G---KKENIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHE 324 (426)
T ss_dssp HHHHHHHHHTTTTSSHHHHHHHHHHHC----C---SSSSTTTTSGGGCCSSCCTGGGTBCCSSCSSCCTTHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCHHHHHHHHHHHh----c---CchhHHHHHHHHHhCCCCcCcCCCCCCCCCCCCccHHHHHHHHHH
Confidence 999999999999999999999999875 5 35689999999999999 99999999999999999999999987
Q ss_pred hC---C-CChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHc
Q 013306 347 HL---P-DDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRAL 422 (445)
Q Consensus 347 ~~---~-~~~~~~la~~le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~ 422 (445)
++ + ++++++++.+||+++.+ +++++.|+++||||||+|+++++||||. ++||+||++||++||+||++||+..
T Consensus 325 l~~~~g~~~~~~~~a~~le~~~~~--~~~~~~k~l~pNVDfysg~i~~~lGip~-~~ft~lFaisR~~Gw~AH~~Eq~~~ 401 (426)
T 3l96_A 325 VLKELGTKDDLLEVAMELENIALN--DPYFIEKKLYPNVDFYSGIILKAMGIPS-SMFTVIFAMARTVGWIAHWSEMHSD 401 (426)
T ss_dssp HHHHTCSCCSSTTHHHHHHHHHHH--CHHHHHHTCCBCHHHHHHHHHHHTTCCT-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhh--cccccccCCCCchHHHHHHHHHHcCCCc-ccchhhhHHHHHHHHHHHHHHHHhc
Confidence 53 2 78999999999999976 5677789999999999999999999996 9999999999999999999999987
Q ss_pred CCCcccCcccchHH
Q 013306 423 GLPLERPKSVTLDW 436 (445)
Q Consensus 423 ~~pI~RP~s~~~~~ 436 (445)
+.||+||+++|+|.
T Consensus 402 ~~~I~RPr~~Y~G~ 415 (426)
T 3l96_A 402 GMKIARPRQLYTGY 415 (426)
T ss_dssp HCCCCCCEEEECSC
T ss_pred CCCccCCcceecCC
Confidence 66899999999985
No 7
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis}
Probab=100.00 E-value=1.1e-95 Score=744.00 Aligned_cols=342 Identities=23% Similarity=0.336 Sum_probs=312.9
Q ss_pred ccCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCC
Q 013306 76 IGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (445)
Q Consensus 76 ~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~l 154 (445)
.+||+|+++++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||++|+++|+++|.+++.+
T Consensus 2 ~~Gl~g~~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~fEeva~LL~~G~lP~~~el~~f~~~l~~~~~l 72 (363)
T 2c6x_A 2 HYGLKGITCVETSISHIDGEKGRLIYRGHHAKDIALNH---------SFEEAAYLILFGKLPSTEELQVFKDKLAAERNL 72 (363)
T ss_dssp CGGGTTCCCEEESSEEEETTTTEEEETTEEHHHHHHHS---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTSC
T ss_pred CCcCCCCeeeeeeCeEEECCCCEEEEcCccHHHHHccC---------CHHHHHHHHHCCCCcCHHHHHHHHHHHHHccCC
Confidence 4799999999999999999999 799999999999985 699999999999999999999999999999999
Q ss_pred cHHHHHHHHcCCCCCChHHHHHHHHHHhccCCh-hHHHHHhh---hhhhh-------hhcCCc-ccCCCCCCCHHHHHHH
Q 013306 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSE-FQEAYEKG---IHKSK-------IYKDGK-IIPKDDSLDYGGNFSH 222 (445)
Q Consensus 155 p~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~-~~~~y~~~---~~k~~-------~~~~g~-~~~p~~~l~~a~Nfl~ 222 (445)
|+++.++++.+|+++|||++|+++|++|++.+. ....++++ +++.+ +++.|+ +++|++++||++||++
T Consensus 73 p~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~~~~~~~~~a~~Lia~~p~i~a~~~~~~~g~~~i~p~~~ls~a~nfl~ 152 (363)
T 2c6x_A 73 PEHIERLIQSLPNNMDDMSVLRTVVSALGENTYTFHPKTEEAIRLIAITPSIIAYRKRWTRGEQAIAPSSQYGHVENYYY 152 (363)
T ss_dssp CHHHHHHHHHSCSSSCHHHHHHHHHHHHCCSSCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCSHHHHHH
T ss_pred CHHHHHHHHhCcccCCchHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCHHHHHHH
Confidence 999999999999999999999999999987211 11122222 45554 234565 7889999999999999
Q ss_pred HhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHhcC
Q 013306 223 MLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECG 300 (445)
Q Consensus 223 ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig 300 (445)
|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||+|++||+++ +
T Consensus 153 ml~g~~p~~~~~~~ld~~Lvl~aDHg-~n~St~aarv~aSt~~d~~savaagi~aL~GplHGGAne~v~~~l~~i----~ 227 (363)
T 2c6x_A 153 MLTGEQPSEAKKKALETYMILATEHG-MNASTFSARVTLSTESDLVSAVTAALGTMKGPLHGGAPSAVTKMLEDI----G 227 (363)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHHCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTSSCCCHHHHHHHHTC----C
T ss_pred HHcCCCCCHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHhcCccHHHHHHHHHHHcccCccCCchHHHHHHHHHh----C
Confidence 9976 78999999999999999998 899999999999999999999999999999999999999999999775 5
Q ss_pred CCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCc
Q 013306 301 ENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPN 380 (445)
Q Consensus 301 ~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~~~~~~~~la~~le~~~~~~~~~~~k~k~l~pN 380 (445)
+++++++||++.+++|++||||||||||+.|||+++|+++++++++++++++++.+||+++.+...+|++.|++|||
T Consensus 228 ---~~~~~~~~v~~~l~~~~~i~GfGHrvyk~~DPRa~~l~~~a~~~~~~~~~~~~a~~le~~~~~~~g~yf~~k~l~pN 304 (363)
T 2c6x_A 228 ---EKEHAEAYLKEKLEKGERLMGFGHRVYKTKDPRAEALRQKAEEVAGNDRDLDLALHVEAEAIRLLEIYKPGRKLYTN 304 (363)
T ss_dssp ---SSTTHHHHHHHHHHTTCCCTTBCCSSCSSCCHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHSCSSCCCBC
T ss_pred ---ChhhHHHHHHHHHHcCCcccCCCCcccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCCCCcC
Confidence 45789999999999999999999999999999999999999998778999999999999997633378899999999
Q ss_pred hhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchHH
Q 013306 381 VDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDW 436 (445)
Q Consensus 381 VD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~ 436 (445)
||||+|++|++||||. ++||+||++||++||+||++||+.++ ||+||+++|+|.
T Consensus 305 VD~~sg~i~~~lG~p~-~~~t~lF~i~R~~Gw~AH~~Eq~~~~-~i~RP~~~Y~G~ 358 (363)
T 2c6x_A 305 VEFYAAAVMRAIDFDD-ELFTPTFSASRMVGWCAHVLEQAENN-MIFRPSAQYTGA 358 (363)
T ss_dssp THHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHTTTC-CCCCCEEEECSC
T ss_pred hHHHHHHHHHHhCCCh-hhhhhhhHHhccccHHHHHHHHHHcC-CccCCccccCCC
Confidence 9999999999999996 99999999999999999999999988 899999999985
No 8
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum}
Probab=100.00 E-value=2.9e-95 Score=750.53 Aligned_cols=351 Identities=28% Similarity=0.408 Sum_probs=321.5
Q ss_pred hhCCccccceeecccccCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHH
Q 013306 61 ELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKE 139 (445)
Q Consensus 61 ~~g~~~~g~~tv~~~~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~ 139 (445)
+||.++++.+|++ +.+||+|+++++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||++
T Consensus 9 ~~~~~~~~~~~~~-~~~Gl~gv~~~~t~Is~idg~~G~L~YRGy~i~dLa~~~---------~fEeva~LLl~G~lPt~~ 78 (409)
T 2ibp_A 9 KTTGKILQSPCGP-IIHGLEDVLIKSTSISDIDGEKGILWYRGYRIEELARLS---------TYEEVSYLILYGRLPTKR 78 (409)
T ss_dssp EESSCEECCTTSC-EEGGGTTCEEEEECSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHH
T ss_pred CCCCcccCcCCCC-CCCCcCCCeeeeeeCeEEECCCCEEEEcCccHHHHHccC---------CHHHHHHHHHCCCCcCHH
Confidence 7999999999999 77999999999999999999999 799999999999986 699999999999999999
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHcCCCCCChHHHHHHHHHHhccCChhH----HHHHhhh-----------------hh
Q 013306 140 QVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQ----EAYEKGI-----------------HK 198 (445)
Q Consensus 140 e~~~f~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~~~----~~y~~~~-----------------~k 198 (445)
|+++|+++|..++.+|+++.++++.+|++ |||++|+++|++|++++++. ++|.+|+ ++
T Consensus 79 el~~f~~~l~~~~~lp~~~~~~~~~~p~~-hPM~~l~~~v~aL~~~~~~~~~~~~~~~~g~~k~~~~~~~~~~a~~Lia~ 157 (409)
T 2ibp_A 79 ELEDYINRMKKYRELHPATVEVIRNLAKA-HPMFALEAAVAAEGAYDEDNQKLIEALSVGRYKAEEKELAYRIAEKLVAK 157 (409)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHhCCcc-CchHHHHHHHHHHhccCccccchhhhhhcccccccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999987653 2333332 33
Q ss_pred hh-------hhcCCc-ccCCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHH
Q 013306 199 SK-------IYKDGK-IIPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLS 268 (445)
Q Consensus 199 ~~-------~~~~g~-~~~p~~~l~~a~Nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~a 268 (445)
.+ +++.|+ +++|++++||++||++||++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|
T Consensus 158 ~p~i~a~~y~~~~g~~~i~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~LvL~ADHg-~naST~aaRv~aSt~ad~~sa 236 (409)
T 2ibp_A 158 MPTIVAYHYRFSRGLEVVRPRDDLGHAANFLYMMFGREPDPLASRGIDLYLILHADHE-VPASTFAAHVVASTLSDLYSS 236 (409)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCS-CCHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCC-CChhHHHHHHHhhcCCcHHHH
Confidence 33 224465 78899999999999999976 68999999999999999998 899999999999999999999
Q ss_pred HHHHHhccccccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhC-CCcccccCCCCCCCCCccHHHHHHHHHhh
Q 013306 269 FAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNS-GKVVPGFGHGVLRKTDPRYTCQREFALKH 347 (445)
Q Consensus 269 vsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~-g~~IpGfGH~vyr~~DPRa~~L~~~a~~~ 347 (445)
++|||++|+||+||||||+|++||+++ + +++++++||++.+++ |++||||||||||+.|||+++|+++++++
T Consensus 237 vaagi~aL~GplHGGAne~v~~ml~ei----~---~~~~~~~~v~~~l~~~~~~i~GfGHrvyk~~DPRa~~L~~~a~~l 309 (409)
T 2ibp_A 237 VAAAIAALKGPLHGGANEMAVRNYLEI----G---TPAKAKEIVEAATKPGGPKLMGVGHRVYKAYDPRAKIFKEFSRDY 309 (409)
T ss_dssp HHHHHHHHTSTTTSCHHHHHHHHHHHH----C---CGGGHHHHHHHHTSTTCCCCTTBCCSSCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCccCCchHHHHHHHHHh----C---CHHHHHHHHHHHHHhcCCcCcCCCccccCCCCCchHHHHHHHHHH
Confidence 999999999999999999999999886 5 568999999999999 99999999999999999999999999988
Q ss_pred C---CCC-hHHHHHHHHHHhh--hhhHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHH
Q 013306 348 L---PDD-PLFQLVSKLFEVV--PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRA 421 (445)
Q Consensus 348 ~---~~~-~~~~la~~le~~~--~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~ 421 (445)
. +.+ ++++++.+||+++ .+++ +.|+++||||||+|++|++||||. ++||+||++||++||+||++||+.
T Consensus 310 ~~~~~~~g~~~~~a~~le~~~l~~~~~----~~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFaisR~~Gw~AH~~Eq~~ 384 (409)
T 2ibp_A 310 VAKFGDPQNLFAIASAIEQEVLSHPYF----QQRKLYPNVDFWSGIAFYYMGIPY-EYFTPIFAMSRVVGWVAHVLEYWE 384 (409)
T ss_dssp HHHHCCTTCHHHHHHHHHHHHHHCHHH----HHTTCCBCGGGTHHHHHHHHTCCG-GGHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHhCCChHHHHHHHHHHHHHccchhh----hhcCCCCChHHHHHHHHHHhCCCH-HhhhhHHHHhccccHHHHHHHHHh
Confidence 3 454 9999999999999 5544 358999999999999999999996 999999999999999999999999
Q ss_pred cCCCcccCcccchHH
Q 013306 422 LGLPLERPKSVTLDW 436 (445)
Q Consensus 422 ~~~pI~RP~s~~~~~ 436 (445)
.+ +|+||++.|+|.
T Consensus 385 ~~-~i~RP~~~Y~G~ 398 (409)
T 2ibp_A 385 NN-RIFRPRACYIGP 398 (409)
T ss_dssp GC-CCCCCEEEECSC
T ss_pred cC-CccCchhhccCC
Confidence 88 699999999985
No 9
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0
Probab=100.00 E-value=2.4e-95 Score=743.32 Aligned_cols=340 Identities=24% Similarity=0.377 Sum_probs=300.1
Q ss_pred cceeecccccCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHH
Q 013306 68 GNITVDMVIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSK 146 (445)
Q Consensus 68 g~~tv~~~~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~ 146 (445)
|-.|+| +||+|+.+++|+||+||+++| |+||||+|+||+++. +||||+||||+|+|||++|+++|++
T Consensus 3 ~~~~~~---~Gl~gv~~~~t~Is~idg~~g~L~YRGy~I~dLa~~~---------~feev~yLLl~G~lPt~~el~~f~~ 70 (375)
T 3tqg_A 3 AMTKTA---KGLRGQSAGETSIATVGKEGHGLTYRGYRIEDLAANA---------TFEEVAYLLLKNKLPTKSELDAYTK 70 (375)
T ss_dssp ----------------CCEESSEEECTTSCCEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred CCcccC---CccCCCeEeeeeceEEeCCCCEEEECCeeHHHHHhcC---------CHHHHHHHHHcCcCcCHHHHHHHHH
Confidence 344555 599999999999999999887 799999999999985 6999999999999999999999999
Q ss_pred HHHhhcCCcHHHHHHHHcCCCCCChHHHHHHHHHHhccCCh---hHHHHHhh---hhhhh-------hhcCCc-ccCCCC
Q 013306 147 ELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSE---FQEAYEKG---IHKSK-------IYKDGK-IIPKDD 212 (445)
Q Consensus 147 ~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~---~~~~y~~~---~~k~~-------~~~~g~-~~~p~~ 212 (445)
+|.+++.||+++.++|++||+++|||++|+++|++|+++++ +...++++ ++|.+ +++.|. ++.|++
T Consensus 71 ~l~~~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~aL~~~~~~~~~~~~~~~a~~LiAk~p~i~a~~yr~~~g~~~i~p~~ 150 (375)
T 3tqg_A 71 KLVNLRSLPPALKDTLERIPASSHPMDVMRTGCSMLGNLEPENGFENEQNIADRLVAIFPAIQCYWYHYSHHGKRIDTEL 150 (375)
T ss_dssp HHHTTCCCCHHHHHHHHTSCTTSCHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred HHHHccCCCHHHHHHHHhCCCCCChHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC
Confidence 99999999999999999999999999999999999998653 34445444 56665 223444 788888
Q ss_pred C-CCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHH
Q 013306 213 S-LDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVL 289 (445)
Q Consensus 213 ~-l~~a~Nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~ 289 (445)
+ +||++||++||++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||+|+
T Consensus 151 ~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lil~ADHe-~n~St~tarvvaSt~ad~ysavaagi~aL~GplHGGAne~v~ 229 (375)
T 3tqg_A 151 DDLTLAGYFLHLLLGKKAAQMAIDCMNASLILYAEHE-FNASTFAARVCSATLSDIYSAVTAAIATLRGPLHGGANEAAM 229 (375)
T ss_dssp CCSSHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHTSHHHHCHHHHHH
T ss_pred ccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCC-CCHHHHHHHHHHccCCCHHHHHHHHHHhccCcccCCHHHHHH
Confidence 6 9999999999976 68899999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhhhh
Q 013306 290 LWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVVPP 366 (445)
Q Consensus 290 ~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~~~~~~la~~le~~~~~ 366 (445)
+||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++. +++++++++.++|+++.+
T Consensus 230 ~ml~~i----~---~~~~~~~~v~~~~~~~~~i~GfGHrVyk~~DPRa~~l~~~a~~l~~~~~~~~~~~~a~~le~~~~~ 302 (375)
T 3tqg_A 230 DLIMLY----K---TPSEAIAGIKRKLANKELIMGFGHAVYRERDPRNAIIKSWAQKLAPNAADGYLFDISDAIENTMQD 302 (375)
T ss_dssp HHHTTC----S---SHHHHHHHHHHHHHTCCCCTTBCCSSCSSCCHHHHHHHHHHHHHTTTSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHh----c---ChhHHHHHHHHHHhcCCCccCCCCCCCCCCCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999764 5 578999999999999999999999999999999999999999974 468999999999999854
Q ss_pred hHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchHH
Q 013306 367 ILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDW 436 (445)
Q Consensus 367 ~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~ 436 (445)
.|+++||||||+|+++++||||. ++||++|++||++||+||++||+..+ +|+||++.|+|.
T Consensus 303 -------~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFa~sR~~Gw~AH~~Eq~~~~-~iiRP~~~Y~G~ 363 (375)
T 3tqg_A 303 -------EKKLFPNLDFYSATAYHFLNIPT-KLFTPIFVMSRVTGWCAHIFEQRKDN-RIIRPNADYIGP 363 (375)
T ss_dssp -------HHCCCBCHHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHHSC-CCCCCEEEECSC
T ss_pred -------hcCCCCChHHHHHHHHHHcCCCH-HHHHHHHHHHhHHHHHHHHHHHHhcC-CCCCCcceecCC
Confidence 37999999999999999999996 99999999999999999999999988 589999999985
No 10
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica}
Probab=100.00 E-value=3.9e-95 Score=746.82 Aligned_cols=348 Identities=25% Similarity=0.359 Sum_probs=298.9
Q ss_pred CCccccceeecc---cccCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCH
Q 013306 63 GKAQLGNITVDM---VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSK 138 (445)
Q Consensus 63 g~~~~g~~tv~~---~~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~ 138 (445)
|++++.+.|+++ +..||+|+.+++|+||+||+++| |+||||+|+||+++. +||||+||||+|+|||+
T Consensus 18 ~~~~~~~~~~~~~~~~~~Gl~gv~~~~T~Is~idg~~g~L~YRGy~I~dLa~~~---------~fEevayLLl~G~LPt~ 88 (404)
T 3o8j_A 18 DTTILQNNTHVIKPKKSVALSGVPAGNTALCTVGKSGNDLHYRGYDILDLAEHC---------EFEEVAHLLIHGKLPTR 88 (404)
T ss_dssp -----------------------CCCEESSEEECC-CCCEEETTEEHHHHHHHC---------CHHHHHHHHHTSSCCCH
T ss_pred CcchhhcCcccCCCCCCCCCCCceEeeeeceeeeCCCCEEEECCeEHHHHHhcC---------CHHHHHHHHHcCcCCCH
Confidence 455666667666 66899999999999999999887 799999999999985 69999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHcCCCCCChHHHHHHHHHHhccCCh------hHHHHHhh---hhhhh-------hh
Q 013306 139 EQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSE------FQEAYEKG---IHKSK-------IY 202 (445)
Q Consensus 139 ~e~~~f~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~------~~~~y~~~---~~k~~-------~~ 202 (445)
+|+++|+++|.+++.||+++.++|++||+++|||++|+++|++|+++++ +...++++ ++|.+ ++
T Consensus 89 ~el~~f~~~l~~~~~lp~~~~~~~~~~p~~~hPM~~L~~~vsaL~~~~~~~~d~~~~~~~~~a~rLiAk~pti~a~~yr~ 168 (404)
T 3o8j_A 89 DELNAYKSKLKALRGLPANVRTVLEALPAASHPMDVMRTGVSALGCTLPEKEGHTVSGARDIADKLLASLSSILLYWYHY 168 (404)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHTSCTTSCHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHhCCCCCChHHHHHHHHHHHHhcCcccccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987542 34455554 56665 22
Q ss_pred c-CCcccC-CCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhcccc
Q 013306 203 K-DGKIIP-KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAG 278 (445)
Q Consensus 203 ~-~g~~~~-p~~~l~~a~Nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~G 278 (445)
+ +|.++. |++++||++||++||++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+|
T Consensus 169 ~~g~~~i~~~~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe-~N~St~taRvvaSt~ad~ysavaagi~aL~G 247 (404)
T 3o8j_A 169 SHNGERIQPETDDDSIGGHFLHLLHGEKPTQSWEKAMHISLVLYAEHE-FNASTFTSRVIAGTGSDVYSAIIGAIGALRG 247 (404)
T ss_dssp HHHCCCCCCCCCCSSHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCS-SSHHHHHHHHHHTTTCCHHHHHHHHHHHHTS
T ss_pred HcCCCCCCCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCC-CChHHHHHHHHHhcCCCHHHHHHHHHHHccC
Confidence 3 355555 55899999999999986 68899999999999999999 7999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHH
Q 013306 279 PLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQ 355 (445)
Q Consensus 279 PlHGgA~~~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~~~~~~ 355 (445)
|+||||||+|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++|+++. +++++++
T Consensus 248 plHGGAne~v~~ml~~i----~---~~~~~~~~v~~~l~~~~~I~GFGHrVyk~~DPRa~~l~~~a~~l~~~~g~~~~~~ 320 (404)
T 3o8j_A 248 PKHGGANEVSLEIQQRY----E---TPDEAEADIRKRVENKEVVIGFGHPVYTIADPRHQVIKRVAKQLSEEGGSLKMYH 320 (404)
T ss_dssp TTTTCHHHHHHHHHTTC----S---SHHHHHHHHHHHHHTTCCCTTBCCSSCSSCCHHHHHHHHHHHHHHHHHSCCHHHH
T ss_pred CCcCCHHHHHHHHHHHh----c---CchhHHHHHHHHHhcCCcccCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCcHHHH
Confidence 99999999999999764 5 578999999999999999999999999999999999999999874 4689999
Q ss_pred HHHHHHHhhhhhHhhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchH
Q 013306 356 LVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLD 435 (445)
Q Consensus 356 la~~le~~~~~~~~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~ 435 (445)
++.+||+++.+ .|+++||||||+|++|++||||. ++||+||++||++||+||++||+..+ +|+||++.|+|
T Consensus 321 ~a~~le~~~~~-------~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFaisR~~Gw~AH~~Eq~~~~-riiRPr~~Y~G 391 (404)
T 3o8j_A 321 IADRLETVMWE-------TKKMFPNLDWFSAVSYNMMGVPT-EMFTPLFVIARVTGWAAHIIEQRQDN-KIIRPSANYTG 391 (404)
T ss_dssp HHHHHHHHHHH-------HHCCCBCTTTHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHHSC-CCCCCCEEECS
T ss_pred HHHHHHHHHHH-------hcCCCcChHHHHHHHHHHcCCCh-HhHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCcceecC
Confidence 99999999743 47999999999999999999995 99999999999999999999999987 58999999998
Q ss_pred H
Q 013306 436 W 436 (445)
Q Consensus 436 ~ 436 (445)
.
T Consensus 392 ~ 392 (404)
T 3o8j_A 392 P 392 (404)
T ss_dssp C
T ss_pred C
Confidence 5
No 11
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1
Probab=100.00 E-value=2e-94 Score=738.30 Aligned_cols=337 Identities=27% Similarity=0.401 Sum_probs=309.3
Q ss_pred cCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCc
Q 013306 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (445)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp 155 (445)
+||+|+++++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||++|+++|+++|.+++.+|
T Consensus 6 ~Gl~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~feeva~LL~~G~lPt~~el~~f~~~l~~~~~lp 76 (377)
T 1o7x_A 6 KGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNYG---------SYEETIYLMLYGKLPTKKELNDLKAKLNEEYEVP 76 (377)
T ss_dssp GGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred cccCCCeeeeeeCeEEECCCCEEEECCccHHHHHcCC---------CHHHHHHHHHCCCCcCHHHHHHHHHHHHHccCCC
Confidence 799999999999999999999 799999999999985 6999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhccCCh----hHHHHHhh---hhhhh-------hhcCCc-ccCCCCCCCHHHHH
Q 013306 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSE----FQEAYEKG---IHKSK-------IYKDGK-IIPKDDSLDYGGNF 220 (445)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~----~~~~y~~~---~~k~~-------~~~~g~-~~~p~~~l~~a~Nf 220 (445)
+++.++++.+|+++|||++|+++|++|+++++ ....++++ +++.+ +++.|+ +++|++++||++||
T Consensus 77 ~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~~~~~~~~~~~~a~~Lia~~p~i~a~~y~~~~g~~~i~p~~~ls~a~nf 156 (377)
T 1o7x_A 77 QEVLDTIYLMPKEADAIGLLEVGTAALASIDKNFKWKENDKEKAISIIAKMATLVANVYRRKEGNKPRIPEPSDSFAKSF 156 (377)
T ss_dssp HHHHHHHHHSCTTSCHHHHHHHHHHHHHHHCCCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCSCHHHHH
T ss_pred HHHHHHHHhCcccCCcHHHHHHHHHHHhhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHH
Confidence 99999999999999999999999999987633 22223333 45555 234565 78899999999999
Q ss_pred HHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHh
Q 013306 221 SHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDE 298 (445)
Q Consensus 221 l~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ 298 (445)
++||++ +++..+++||++|||||||| +|+||||+||++||++|+|+|++|||++|+||+||||||+|++||+++
T Consensus 157 l~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aaRv~aSt~ad~~savaagi~aL~GplHGGAne~v~~ml~ei--- 232 (377)
T 1o7x_A 157 LLASFAREPTTDEINAMDKALILYTDHE-VPASTTAALVAASTLSDMYSSLTAALAALKGPLHGGAAEEAFKQFIEI--- 232 (377)
T ss_dssp HHHHHSSCCCHHHHHHHHHHHHHHSCCS-CCHHHHHHHHHHHTTCCHHHHHHHHHHHHTSTTTTTHHHHHHHHHHHH---
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHhccCC-CChHHHHHHHHHhcCCcHHHHHHHHHHhcCCCCCCChHHHHHHHHHHh---
Confidence 999976 78899999999999999998 899999999999999999999999999999999999999999999886
Q ss_pred cCCCCChhhHHHHHHHHH-hCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CC-ChHHHHHHHHHHhhhhhHhhcCC
Q 013306 299 CGENVTTEQLKDYVWKTL-NSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PD-DPLFQLVSKLFEVVPPILTKLGK 373 (445)
Q Consensus 299 ig~~~~~~~~~~~v~~~l-~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~-~~~~~la~~le~~~~~~~~~~~k 373 (445)
+ +++++++||++.+ ++|++||||||||||+.|||+++|+++++++. ++ +++++++.+||+++.+++ +
T Consensus 233 -~---~~~~~~~~v~~~l~~~~~~i~GfGHrvyk~~DPRa~~l~~~a~~l~~~~~~~~~~~~~a~~le~~~~~~~----~ 304 (377)
T 1o7x_A 233 -G---DPNRVQNWFNDKVVNQKNRLMGFGHRVYKTYDPRAKIFKKLALTLIERNADARRYFEIAQKLEELGIKQF----S 304 (377)
T ss_dssp -C---SGGGHHHHHHHHTTTTCCCCTTBCCSSCSSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH----T
T ss_pred -C---ChhHHHHHHHHHHHhcCCcccCCCccccCCCCCchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH----h
Confidence 5 5689999999999 99999999999999999999999999999983 45 789999999999997643 6
Q ss_pred CCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHc-CCCcccCcccchHH
Q 013306 374 VKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRAL-GLPLERPKSVTLDW 436 (445)
Q Consensus 374 ~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~-~~pI~RP~s~~~~~ 436 (445)
.|+++||||||+|++|++||||. ++||+||++||++||+||++||+.+ + +|+||++.|+|.
T Consensus 305 ~k~l~pNVD~~sg~v~~~lG~p~-~~~t~lF~i~R~~Gw~AH~~Eq~~~~~-~i~RP~~~Y~G~ 366 (377)
T 1o7x_A 305 SKGIYPNTDFYSGIVFYALGFPV-YMFTALFALSRTLGWLAHIIEYVEEQH-RLIRPRALYVGP 366 (377)
T ss_dssp TTTCCBCTTTTHHHHHHHHTCCG-GGHHHHHHHHHHHHHHHHHHHHHHHSC-CCCCCEEEECSC
T ss_pred hcCCCCChHHHHHHHHHHhCCCh-hhhhhHHHHhhhccHHHHHHHHHhccC-CccCCcccccCC
Confidence 78999999999999999999996 9999999999999999999999999 6 899999999986
No 12
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.4e-94 Score=735.40 Aligned_cols=337 Identities=23% Similarity=0.334 Sum_probs=308.8
Q ss_pred cCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCc
Q 013306 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (445)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp 155 (445)
+||+|+++++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||++|+++|+++|.+++.+|
T Consensus 7 ~Gl~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~fEeva~LL~~G~lP~~~el~~f~~~l~~~~~lp 77 (378)
T 1vgm_A 7 RGLENVIIKTTGLTYIDGINGILRYRGYDINDLVNYA---------SYEELIHLMLYGELPNRQQLNQIKGIINESFEVP 77 (378)
T ss_dssp GGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred CccCCCeeeeeeceEEECCCCeEEEcCeeHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Confidence 799999999999999999999 799999999999985 6999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhccCCh----hHHHHHhh---hhhhh-------hhcCCc-ccCCCCCCCHHHHH
Q 013306 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSE----FQEAYEKG---IHKSK-------IYKDGK-IIPKDDSLDYGGNF 220 (445)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~----~~~~y~~~---~~k~~-------~~~~g~-~~~p~~~l~~a~Nf 220 (445)
+++.++++.+|+++|||++|+++|++|+++++ ....++++ +++.+ +++.|+ ++.|++++||++||
T Consensus 78 ~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~~~~~~~~~~~~a~~Lia~~p~i~a~~y~~~~g~~~i~p~~~ls~a~nf 157 (378)
T 1vgm_A 78 EQVISTIFSMPRNCDAIGMMETAFGILASIYDPKWNRATNKELAVQIIAKTATITANIYRAKEGLKPKIPEPSESYAESF 157 (378)
T ss_dssp HHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHCCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCSCHHHHH
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 99999999999999999999999999987522 22233333 45555 234566 78899999999999
Q ss_pred HHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHh
Q 013306 221 SHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDE 298 (445)
Q Consensus 221 l~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ 298 (445)
++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||+|++||+++
T Consensus 158 l~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aaRv~aSt~~d~~savaagi~aL~GplHGGAne~v~~ml~ei--- 233 (378)
T 1vgm_A 158 LAATFGKKPTQEEIKAMDASLILYTDHE-VPASTTAALVASSTLSDMYSCIVAALAALKGPLHGGAAEEAFKQFVEI--- 233 (378)
T ss_dssp HHHHHSSCCCHHHHHHHHHHHHHTSCCS-CCHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTSCHHHHHHHHHHHH---
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHhccCC-CchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCChHHHHHHHHHHh---
Confidence 999976 78999999999999999998 899999999999999999999999999999999999999999999886
Q ss_pred cCCCCChhhHHHHHHHHH-hCCCcccccCCCCCCCCCccHHHHHHHHHhhC---C-CChHHHHHHHHHHhhhhhHhhcCC
Q 013306 299 CGENVTTEQLKDYVWKTL-NSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---P-DDPLFQLVSKLFEVVPPILTKLGK 373 (445)
Q Consensus 299 ig~~~~~~~~~~~v~~~l-~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~-~~~~~~la~~le~~~~~~~~~~~k 373 (445)
+ +++++++||++.+ ++|++||||||||||+.|||+++|+++++++. + ++++++++.+||+++.+++ |
T Consensus 234 -~---~~~~~~~~v~~~l~~~~~~i~GfGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~~~a~~le~~~~~~~----~ 305 (378)
T 1vgm_A 234 -G---SVENADKWFEEKIIKGKSRLMGFGHRVYKTYDPRAKIFKTLAKSFAEKNENVKKYYEIAERIEKLGVDTF----G 305 (378)
T ss_dssp -C---SGGGHHHHHHHHTTTSCCCCTTBCCSSCSSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH----G
T ss_pred -C---CHhHHHHHHHHHHHhcCCcccCCCCcccCCCCCchHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH----h
Confidence 5 5689999999999 99999999999999999999999999999983 4 5789999999999987644 5
Q ss_pred CCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHc-CCCcccCcccchHH
Q 013306 374 VKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRAL-GLPLERPKSVTLDW 436 (445)
Q Consensus 374 ~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~-~~pI~RP~s~~~~~ 436 (445)
.|+++||||||+|++|++||||. ++||+||++||++||+||++||+.+ + +|+||++.|+|.
T Consensus 306 ~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFaisR~~Gw~AH~~Eq~~~~~-~i~RP~~~Y~G~ 367 (378)
T 1vgm_A 306 SKHIYPNTDFYSGIVFYALGFPI-YMFTSLFALSRVLGWLAHIIEYVEEQH-RLIRPRALYIGP 367 (378)
T ss_dssp GGTCCBCTTTTHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHHHSC-CCCCCEEEECSC
T ss_pred hCCCCCChHHHHHHHHHHhCCCH-HhhhHHHHHHhhccHHHHHHHHHhccC-CccCcccccCCC
Confidence 68999999999999999999996 9999999999999999999999999 6 899999999985
No 13
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=100.00 E-value=2.6e-93 Score=730.10 Aligned_cols=338 Identities=28% Similarity=0.427 Sum_probs=309.3
Q ss_pred cCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCc
Q 013306 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (445)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~lp 155 (445)
+||+|+++++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||++|+++|+++|..++.+|
T Consensus 5 ~Gl~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~fEeva~LLl~G~lPt~~el~~f~~~l~~~~~lp 75 (377)
T 1iom_A 5 RGLEGVLFTESRMCYIDGQQGKLYYYGIPIQELAEKS---------SFEETTFLLLHGRLPRRQELEEFSAALARRRALP 75 (377)
T ss_dssp GGGTTCCCSCCSSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCSCC
T ss_pred cccCCCeeeeeeCeEEECCCCEEEEcCeeHHHHHccC---------CHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCCC
Confidence 799999999999999999999 799999999999986 6999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhccCCh------hHHHHHhh---hhhhh-------hhcCCc-ccCCCCCCCHHH
Q 013306 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSE------FQEAYEKG---IHKSK-------IYKDGK-IIPKDDSLDYGG 218 (445)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~------~~~~y~~~---~~k~~-------~~~~g~-~~~p~~~l~~a~ 218 (445)
+++.++|+.+|+++|||++|+++|++|+++++ ....++++ +++.+ +++.|+ +++|++++||++
T Consensus 76 ~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~~~~~~~~~~~~~~a~~Lia~~p~i~a~~y~~~~g~~~i~p~~~ls~a~ 155 (377)
T 1iom_A 76 AHLLESFKRYPVSAHPMSFLRTAVSEFGMLDPTEGDISREALYEKGLDLIAKFATIVAANKRLKEGKEPIPPREDLSHAA 155 (377)
T ss_dssp HHHHHHHTTSCTTSCHHHHHHHHHHHHHHTCTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHH
T ss_pred HHHHHHHHhCCcCCCchhHHHHHHHHHhccCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCHHH
Confidence 99999999999999999999999999998643 22234333 45555 234565 788999999999
Q ss_pred HHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHH
Q 013306 219 NFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVV 296 (445)
Q Consensus 219 Nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~ 296 (445)
||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||+|++||+++
T Consensus 156 nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aaRv~aSt~~d~~savaagi~aL~GplHGGAne~v~~ml~ei- 233 (377)
T 1iom_A 156 NFLYMANGVEPSPEQARLMDAALILHAEHG-FNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQEI- 233 (377)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHH-
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhccCC-CCchHHHHHHHhhcCCcHHHHHHHHHHHcccCccCChhHHHHHHHHHh-
Confidence 99999976 68899999999999999998 899999999999999999999999999999999999999999999886
Q ss_pred HhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhhhhhHhhcCC
Q 013306 297 DECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVVPPILTKLGK 373 (445)
Q Consensus 297 ~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~~~~~~la~~le~~~~~~~~~~~k 373 (445)
+ +++++++||++.+++|++||||||||||+.|||+++|+++++++. +++++++++.+||+++.+ +++
T Consensus 234 ---~---~~~~~~~~v~~~l~~~~~i~GfGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~le~~~~~---~~~- 303 (377)
T 1iom_A 234 ---G---TPERAREWVREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGHSKEYQILKIVEEEAGK---VLN- 303 (377)
T ss_dssp ---C---SHHHHHHHHHHHHHTTCCCTTBSCSSCSSCCTTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---HHT-
T ss_pred ---c---CchhHHHHHHHHHHCCCcccCCCCcccCCCCCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH---Hhc-
Confidence 5 578999999999999999999999999999999999999999883 678999999999999854 244
Q ss_pred CCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchHH
Q 013306 374 VKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDW 436 (445)
Q Consensus 374 ~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~ 436 (445)
.|+++||||||+|++|++||||. ++||+||++||++||+||++||+..+.+|+||++.|+|.
T Consensus 304 ~k~l~pNVD~~sg~i~~~lG~p~-~~~t~lF~i~R~~Gw~AH~~Eq~~~~~~i~RP~~~Y~G~ 365 (377)
T 1iom_A 304 PRGIYPNVDFYSGVVYSDLGFSL-EFFTPIFAVARISGWVGHILEYQELDNRLLRPGAKYVGE 365 (377)
T ss_dssp TTTCCBCHHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCSC
T ss_pred cCCCCCChHHHHHHHHHHcCCCH-HhhhhHHHHhccccHHHHHHHHHhhcCCcccccccccCC
Confidence 68999999999999999999996 999999999999999999999999344799999999985
No 14
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1
Probab=100.00 E-value=1.9e-93 Score=729.76 Aligned_cols=337 Identities=27% Similarity=0.391 Sum_probs=309.4
Q ss_pred ccCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCC
Q 013306 76 IGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (445)
Q Consensus 76 ~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~l 154 (445)
.+||+|+++++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||++|+++|+++|..++.+
T Consensus 2 ~~Gl~g~~~~~t~Is~id~~~G~L~YRGy~i~~La~~~---------~fEeva~LLl~G~lP~~~el~~f~~~l~~~~~l 72 (371)
T 1aj8_A 2 AKGLEDVYIDQTNICYIDGKEGKLYYRGYSVEELAELS---------TFEEVVYLLWWGKLPSLSELENFKKELAKSRGL 72 (371)
T ss_dssp CGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCC
T ss_pred CCCcCCCeeeeeeCeEEECCCCEEEEcCccHHHHHccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCC
Confidence 3799999999999999999999 799999999999986 699999999999999999999999999999999
Q ss_pred cHHHHHHHHcCCCCCChHHHHHHHHHHhccCCh-------hHHHHHhh---hhhhh-------hhcCCc-ccCCCCCCCH
Q 013306 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSE-------FQEAYEKG---IHKSK-------IYKDGK-IIPKDDSLDY 216 (445)
Q Consensus 155 p~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~-------~~~~y~~~---~~k~~-------~~~~g~-~~~p~~~l~~ 216 (445)
|+++.++|+.+|+++|||++|+++|++|+++++ ....++++ +++.+ +++.|+ +++|++++||
T Consensus 73 p~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~~~~~~~~~~~~~~~a~~Lia~~p~i~a~~y~~~~g~~~i~p~~~ls~ 152 (371)
T 1aj8_A 73 PKEVIEIMEALPKNTHPMGALRTIISYLGNIDDSGDIPVTPEEVYRIGISVTAKIPTIVANWYRIKNGLEYVPPKEKLSH 152 (371)
T ss_dssp CHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCH
T ss_pred CHHHHHHHHhCCCCCChHHHHHHHHHHHhccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCH
Confidence 999999999999999999999999999987532 22233333 55555 234465 7889999999
Q ss_pred HHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHH
Q 013306 217 GGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKS 294 (445)
Q Consensus 217 a~Nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~ 294 (445)
++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||+|++||++
T Consensus 153 ~~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg-~n~St~aarv~aSt~~d~~savaagi~aL~GplHGGAne~v~~~l~~ 231 (371)
T 1aj8_A 153 AANFLYMLHGEEPPKEWEKAMDVALILYAEHE-INASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAVEEAIKQFME 231 (371)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhHhcCCC-CChhHHHHHHHhhcCCcHHHHHHHHHHHcCCCccCCchHHHHHHHHH
Confidence 9999999976 68899999999999999998 89999999999999999999999999999999999999999999988
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCC
Q 013306 295 VVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKV 374 (445)
Q Consensus 295 i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~~~~~~~~la~~le~~~~~~~~~~~k~ 374 (445)
+ + +++++++||++.+++|++||||||||||+.|||+++|+++++++ +++++++++.+||+++. ++++.
T Consensus 232 i----~---~~~~~~~~v~~~l~~~~~i~GfGHrvyk~~DPRa~~l~~~~~~~-~~~~~~~~a~~le~~~~----~~~~~ 299 (371)
T 1aj8_A 232 I----G---SPEKVEEWFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYASKL-GDKKLFEIAERLERLVE----EYLSK 299 (371)
T ss_dssp H----C---SGGGHHHHHHHHHHHTCCCTTBCCSSCSSCCHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH----HHTTT
T ss_pred h----c---CchhHHHHHHHHHHcCCeeecCCccccCCCCccHHHHHHHHHHc-CCCHHHHHHHHHHHHHH----HhccC
Confidence 6 5 46889999999999999999999999999999999999999998 67899999999999863 45677
Q ss_pred CCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchHH
Q 013306 375 KNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDW 436 (445)
Q Consensus 375 k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~ 436 (445)
|+++||||||+|++|++||||. ++||+||++||++||+||++||+..+ +|+||++.|+|.
T Consensus 300 k~l~pNVD~~sg~i~~~lGip~-~~~t~lF~i~R~~Gw~AH~~Eq~~~~-~i~RP~~~Y~G~ 359 (371)
T 1aj8_A 300 KGISINVDYWSGLVFYGMKIPI-ELYTTIFAMGRIAGWTAHLAEYVSHN-RIIRPRLQYVGE 359 (371)
T ss_dssp TTCCBCTTTTHHHHHHTTTCCG-GGHHHHHHHHHHHHHHHHHHHHHTTC-CCCCCEEEECSC
T ss_pred CCCCCChHHHHHHHHHHcCCCH-HhhhhHHHHhccccHHHHHHHHHhcC-CccCchhhccCC
Confidence 9999999999999999999996 99999999999999999999999887 699999999984
No 15
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1
Probab=100.00 E-value=2.6e-93 Score=731.12 Aligned_cols=342 Identities=24% Similarity=0.330 Sum_probs=309.3
Q ss_pred cccCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC
Q 013306 75 VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 153 (445)
Q Consensus 75 ~~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~ 153 (445)
+.+||+|+++++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||++|+++|+++|.+++.
T Consensus 5 ~~~Gl~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~fEeva~LLl~G~lP~~~el~~f~~~l~~~~~ 75 (378)
T 1a59_A 5 IHKGLAGVTADVTAISKVNSDTNSLLYRGYPVQELAAKC---------SFEQVAYLLWNSELPNDSELKAFVNFERSHRK 75 (378)
T ss_dssp CCGGGTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHTSCS
T ss_pred CCCccCCCeeeeeeceEEECCCCeEEEcCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 45899999999999999999999 799999999999986 69999999999999999999999999999999
Q ss_pred CcHHHHHHHHcCCCCCChHHHHHHHHHHhccCCh------hHHHHHhh---hhhhh-------hhcCCc-ccCCCCCCCH
Q 013306 154 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSE------FQEAYEKG---IHKSK-------IYKDGK-IIPKDDSLDY 216 (445)
Q Consensus 154 lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~------~~~~y~~~---~~k~~-------~~~~g~-~~~p~~~l~~ 216 (445)
+|+++.++|+.+|+++|||++|+++|++|+++++ ....++++ +++.+ +++.|+ +++|++++||
T Consensus 76 lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~~~~~~~~~~~~~~a~~Lia~~p~i~a~~y~~~~g~~~i~p~~~ls~ 155 (378)
T 1a59_A 76 LDENVKGAIDLLSTACHPMDVARTAVSVLGANHARAQDSSPEANLEKAMSLLATFPSVVAYDQRRRRGEELIEPREDLDY 155 (378)
T ss_dssp CCHHHHHHHTTSCTTSCHHHHHHHHHHHHHHTCTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCH
T ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCH
Confidence 9999999999999999999999999999998643 22234433 55555 234565 7889999999
Q ss_pred HHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHH
Q 013306 217 GGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKS 294 (445)
Q Consensus 217 a~Nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~ 294 (445)
++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||+|++||++
T Consensus 156 a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aarv~aSt~~d~~savaagi~aL~GplHGGAne~v~~~l~~ 234 (378)
T 1a59_A 156 SANFLWMTFGEEAAPEVVEAFNVSMILYAEHS-FNASTFTARVITSTLADLHSAVTGAIGALKGPLHGGANEAVMHTFEE 234 (378)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCC-CCchHHHHHHHhhcCCcHHHHHHHHHHHccCCccCCchHHHHHHHHH
Confidence 9999999976 68999999999999999998 89999999999999999999999999999999999999999999998
Q ss_pred HHHhcCCCCC---hhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhhhhhH
Q 013306 295 VVDECGENVT---TEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVVPPIL 368 (445)
Q Consensus 295 i~~~ig~~~~---~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~~~~~~la~~le~~~~~~~ 368 (445)
+.+. |++.. ++++++||++.+++|++||||||||||+.|||+++|+++++++. +++++++++.+||+++.+
T Consensus 235 i~~~-~~~~~~~~~~~~~~~v~~~l~~~~~i~GfGHrvyk~~DPRa~~l~~~a~~~~~~~~~~~~~~~a~~le~~~~~-- 311 (378)
T 1a59_A 235 IGIR-KDESLDEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSRVPTMKSALDAMIKHYDRPEMLGLYNGLEAAMEE-- 311 (378)
T ss_dssp SCCC-SSCCHHHHHHHHHHHHHHHHHTTCCCTTBCCSSCSSCCTTHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHH--
T ss_pred Hhhc-CCccccchHHHHHHHHHHHHhCCCeeeCCCCcccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--
Confidence 7432 22111 27899999999999999999999999999999999999999984 678999999999999854
Q ss_pred hhcCCCCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchHH
Q 013306 369 TKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDW 436 (445)
Q Consensus 369 ~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~ 436 (445)
.|+++||||||+|++|++||||. ++||+||++||++||+||++||+..+ +|+||++.|+|.
T Consensus 312 -----~k~l~pNVD~~sg~i~~~lGip~-~~~t~lF~isR~~Gw~AH~~Eq~~~~-~i~RP~~~Y~G~ 372 (378)
T 1a59_A 312 -----AKQIKPNLDYPAGPTYNLMGFDT-EMFTPLFIAARITGWTAHIMEQVADN-ALIRPLSEYNGP 372 (378)
T ss_dssp -----HHCCCBCTHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHHTC-CCCCCCCCCCSC
T ss_pred -----HhCCCCChHHHHHHHHHHhCCCh-hhcchhhhhhcchhHHHHHHHHHhcC-CCcCchhhccCC
Confidence 27999999999999999999995 99999999999999999999999988 699999999985
No 16
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.1e-94 Score=733.34 Aligned_cols=339 Identities=28% Similarity=0.429 Sum_probs=308.3
Q ss_pred cccCccCcceeeeecceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC
Q 013306 75 VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 153 (445)
Q Consensus 75 ~~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~ 153 (445)
+.+||+|+++++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||++|+++|+++|..++.
T Consensus 3 ~~~Gl~g~~~~~t~Is~id~~~G~L~YRGy~i~~La~~~---------~fEeva~LLl~G~lPt~~el~~f~~~l~~~~~ 73 (373)
T 1vgp_A 3 IKKGLEDVYVKETEITYIDGELGRLYYRGYSIYDLAEFS---------NFEEVSYLILYGKLPNREELNWFQEKLREERY 73 (373)
T ss_dssp CCTTCTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCC
T ss_pred CCCccCCCeeeeeeCeEEECCCCEEEEcCeeHHHHHccC---------CHHHHHHHHHCCCCcCHHHHHHHHHHHHHccC
Confidence 34799999999999999999999 799999999999986 69999999999999999999999999999999
Q ss_pred CcHHHHHHHHcCCCCCChHHHHHHHHHHhccCCh--hHHHHHhh---hhhhh-------hhcCCc-ccCCCCCCCHHHHH
Q 013306 154 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSE--FQEAYEKG---IHKSK-------IYKDGK-IIPKDDSLDYGGNF 220 (445)
Q Consensus 154 lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~--~~~~y~~~---~~k~~-------~~~~g~-~~~p~~~l~~a~Nf 220 (445)
+|+++.++|+.+|+++|||++|+++|++|+++++ ....++++ +++.+ +++.|+ +++|++++||++||
T Consensus 74 lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~~~~~~~~~~a~~Lia~~p~i~a~~y~~~~g~~~i~p~~~ls~a~nf 153 (373)
T 1vgp_A 74 LPDFIIKFLREVRKDAQPMDILRTAVSLLGIEDSKNDERTDIKGIKLISKFPTIVANYARLRKGLDIIEPDPKLSHSENF 153 (373)
T ss_dssp CCHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHH
T ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHH
Confidence 9999999999999999999999999999987643 11223322 45554 234565 78899999999999
Q ss_pred HHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHHHHHh
Q 013306 221 SHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDE 298 (445)
Q Consensus 221 l~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~i~~~ 298 (445)
++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||+|++||+++
T Consensus 154 l~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~ST~aaRv~aSt~ad~~savaagi~aL~GplHGGAne~v~~ml~~i--- 229 (373)
T 1vgp_A 154 LYMLYGDRPNEIKSKAMDVTLILHIDHE-MNASTFASLVVASTFSDLYSSIVAGISALKGPLHGGANYEALKMFKEI--- 229 (373)
T ss_dssp HHHHHSSCCCHHHHHHHHHHHHTTSCCS-CCHHHHHHHHHHTTTCCHHHHHHHHHHHHTCTTSSSCCCHHHHHHHHS---
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhccCC-CchHHHHHHHHHhcCccHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHh---
Confidence 999976 68899999999999999998 899999999999999999999999999999999999999999999875
Q ss_pred cCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCC--hHHHHHHHHHHhhhhhHhhcCC
Q 013306 299 CGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDD--PLFQLVSKLFEVVPPILTKLGK 373 (445)
Q Consensus 299 ig~~~~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~~---~~~--~~~~la~~le~~~~~~~~~~~k 373 (445)
+ +++++++||++.+++|++||||||||||+.|||+++|+++++++. +.+ ++++++.+||+++.+ +++
T Consensus 230 -~---~~~~~~~~i~~~l~~~~~i~GfGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~~~a~~le~~~~~----~~~ 301 (373)
T 1vgp_A 230 -G---SPEKVNDYILNRLSNKQRIMGFGHRVYKTYDPRARILKQYAKLLAEKEGGEIYTLYQIAEKVEEIGIK----YLG 301 (373)
T ss_dssp -C---SSSSHHHHHHHHHHTTCCCTTBCCSSCSSCCHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHH----HHG
T ss_pred -c---CchhHHHHHHHHHHcCCcccCCCccccCCCCCchHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH----hcc
Confidence 5 457899999999999999999999999999999999999999984 555 899999999999743 456
Q ss_pred CCCCCCchhhhHHHHHhccCCCccchhhHHHhhhhhhHHHHHHHHHHHcCCCcccCcccchHH
Q 013306 374 VKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDW 436 (445)
Q Consensus 374 ~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~ 436 (445)
.|+++||||||+|++|++||||. ++||+||++||++||+||++||+..+ +|+||++.|+|.
T Consensus 302 ~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFaisR~~Gw~AH~~Eq~~~~-~i~RP~~~Y~G~ 362 (373)
T 1vgp_A 302 PKGIYPNVDFFSSIVFYSLGFEP-DFFPAVFASARVVGWVAHIMEYIKDN-KIIRPKAYYKGE 362 (373)
T ss_dssp GGTCCBCHHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHGGGC-CCCCCCCCCCSC
T ss_pred cCCCCCChHHHHHHHHHHcCCCH-HhhhhhHHhhccccHHHHHHHHHhcC-CCcCccccccCC
Confidence 78999999999999999999996 99999999999999999999999987 699999999984
No 17
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=100.00 E-value=1.3e-93 Score=734.16 Aligned_cols=339 Identities=23% Similarity=0.333 Sum_probs=309.6
Q ss_pred cccCccCcceeeeecceecCCCC-eeecCCCHHHHhh-hCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc
Q 013306 75 VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQK-LLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA 152 (445)
Q Consensus 75 ~~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~-~~p~~~~~~~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~ 152 (445)
+.+||+|+++++|+||+||+++| ++||||+|+||++ +. +||||+||||+|+|||++|+++|+++|.+++
T Consensus 7 ~~~Gl~g~~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~~---------~fEeva~LLl~G~lPt~~el~~f~~~l~~~~ 77 (385)
T 2ifc_A 7 ISKGLEDVNIKWTRLTTIDGNKGILRYGGYSVEDIIASGA---------QDEEIQYLFLYGNLPTEQELRKYKETVQKGY 77 (385)
T ss_dssp BCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHTTC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHGGG
T ss_pred CCCCcCCCeeeeeeCeEEECCCCEEEECCccHHHHHhcCC---------CHHHHHHHHHCCCCcCHHHHHHHHHHHHHcc
Confidence 44899999999999999999999 7999999999999 64 6999999999999999999999999999999
Q ss_pred CCcHHHHHHHHcCCCCCChHHHHHHHHHHhccCCh-----hHHHHHhh---hhhhh-------hhcCCc-ccCCCCCCCH
Q 013306 153 TVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSE-----FQEAYEKG---IHKSK-------IYKDGK-IIPKDDSLDY 216 (445)
Q Consensus 153 ~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~~~-----~~~~y~~~---~~k~~-------~~~~g~-~~~p~~~l~~ 216 (445)
.+|+++.++++.+|+++|||++|+++|++|+++++ ....++++ +++.+ +++.|+ +++|++++||
T Consensus 78 ~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~~~~~~~~~~~~~a~~Lia~~p~i~a~~y~~~~g~~~i~p~~~ls~ 157 (385)
T 2ifc_A 78 KIPDFVINAIRQLPRESDAVAMQMAAVAAMAASETKFKWNKDTDRDVAAEMIGRMSAITVNVYRHIMNMPAELPKPSDSY 157 (385)
T ss_dssp CCCHHHHHHHHTSCTTSCHHHHHHHHHHHHHHHCTTCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCSCH
T ss_pred CCCHHHHHHHHhCCCCCCchHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCH
Confidence 99999999999999999999999999999987633 22233333 45554 234566 7889999999
Q ss_pred HHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhhHHHhhccCCChHHHHHHHHhccccccccccHHHHHHHHHH
Q 013306 217 GGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKS 294 (445)
Q Consensus 217 a~Nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~N~STfaarvvaSt~sD~y~avsAgl~aL~GPlHGgA~~~v~~~l~~ 294 (445)
++||++|+++ +++..+++||++|||||||| +|+||||+||++||++|+|+|++|||++|+||+||||||+|++||++
T Consensus 158 a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aarv~aSt~~d~~savaagi~aL~GplHGGAne~v~~ml~e 236 (385)
T 2ifc_A 158 AESFLNAAFGRKATKEEIDAMNTALILYTDHE-VPASTTAGLVAVSTLSDMYSGITAALAALKGPLHGGAAEAAIAQFDE 236 (385)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHTSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhHhcCCC-ccHHHHHHHHHHhcCCcHHHHHHHHHHHccCCccCChHHHHHHHHHH
Confidence 9999999976 68999999999999999998 89999999999999999999999999999999999999999999988
Q ss_pred HHHhcCCCCChhhHHHHHHHHH-hCCCcccccCCCCCCCCCccHHHHHHHHHhh----CCCChHHHHHHHHHHhhhhhHh
Q 013306 295 VVDECGENVTTEQLKDYVWKTL-NSGKVVPGFGHGVLRKTDPRYTCQREFALKH----LPDDPLFQLVSKLFEVVPPILT 369 (445)
Q Consensus 295 i~~~ig~~~~~~~~~~~v~~~l-~~g~~IpGfGH~vyr~~DPRa~~L~~~a~~~----~~~~~~~~la~~le~~~~~~~~ 369 (445)
+ + +++++++||++.+ ++|++||||||||||+.|||+++|+++++++ .+++++++++.+||+++.+++
T Consensus 237 i----~---~~~~~~~~i~~~l~~~~~~i~GfGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~~~a~~le~~~~~~~- 308 (385)
T 2ifc_A 237 I----K---DPAMVEKWFNDNIINGKKRLMGFGHRVYKTYDPRAKIFKGIAEKLSSKKPEVHKVYEIATKLEDFGIKAF- 308 (385)
T ss_dssp H----C---SGGGHHHHHHHHTTTSSSCCTTBCCSSCSSCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH-
T ss_pred h----C---CHHHHHHHHHHHHHhcCCcccCCCCcccCCCCCchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH-
Confidence 6 5 4689999999999 9999999999999999999999999999998 346899999999999997644
Q ss_pred hcCCCCCCCCchhhhHHHHHhccCCCcc--chhhHHHhhhhhhHHHHHHHHHHHc-CCCcccCcccchHH
Q 013306 370 KLGKVKNPWPNVDAHSGVLLNHFGLAEA--RYYTVLFGVSRSLGICSQLIWDRAL-GLPLERPKSVTLDW 436 (445)
Q Consensus 370 ~~~k~k~l~pNVD~~sg~l~~~lGlp~~--~~~t~lF~vsR~~GwlAH~ieq~~~-~~pI~RP~s~~~~~ 436 (445)
+.|++|||||||+|++|++|||| . ++||+||++||++||+||++||+++ + +|+||++.|+|.
T Consensus 309 ---~~k~l~pNVD~~sg~v~~~lGip-~~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~-~i~RP~~~Y~G~ 373 (385)
T 2ifc_A 309 ---GSKGIYPNTDYFSGIVYMSIGFP-LRNNIYTALFALSRVTGWQAHFIEYVEEQQ-RLIRPRAVYVGP 373 (385)
T ss_dssp ---GGGTCCBCTTTTHHHHHHHHTCC-SGGGHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEECSC
T ss_pred ---hhcCCCCChHHHHHHHHHHcCCC-cchhhhhhHHHHhhcccHHHHHHHHHhccC-CccCcccccCCC
Confidence 56899999999999999999998 6 8999999999999999999999999 7 899999999985
No 18
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0
Probab=55.34 E-value=32 Score=34.66 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CcH--HHHHHHHcCCCCCChHHHHHHHHHHhc
Q 013306 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (445)
Q Consensus 121 ~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~--lp~--~v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (445)
-+|-+.+|++|+|+.|++.+.+.|..-|--+.+ ... ....+..+ ..++|-..+++|+++|.
T Consensus 153 ls~a~nfl~ml~g~~p~~~~~~~ld~~Lil~ADHe~n~St~tarvvaS--t~ad~ysavaagi~aL~ 217 (375)
T 3tqg_A 153 LTLAGYFLHLLLGKKAAQMAIDCMNASLILYAEHEFNASTFAARVCSA--TLSDIYSAVTAAIATLR 217 (375)
T ss_dssp SSHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHc--cCCCHHHHHHHHHHhcc
Confidence 479999999999999999999999998866643 333 34444443 45789899999999984
No 19
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1
Probab=45.93 E-value=55 Score=32.89 Aligned_cols=61 Identities=13% Similarity=0.049 Sum_probs=45.7
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CcHHHHHHHHcCCCCCChHHHHHHHHHHh
Q 013306 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDYVYKAIDALPVTAHPMTQFASGVMAL 182 (445)
Q Consensus 122 ~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~--lp~~v~~~i~~lP~~~hPM~~l~~av~aL 182 (445)
+|-+.++++++|+.|++.+.+.|..-|--+.+ +.......--.--..++|-..+++|+++|
T Consensus 154 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aarv~aSt~~d~~savaagi~aL 216 (378)
T 1a59_A 154 DYSANFLWMTFGEEAAPEVVEAFNVSMILYAEHSFNASTFTARVITSTLADLHSAVTGAIGAL 216 (378)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhcCCcHHHHHHHHHHHc
Confidence 58899999999999999999999988866652 33333333222234578999999999998
No 20
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1
Probab=44.97 E-value=65 Score=32.29 Aligned_cols=61 Identities=16% Similarity=0.160 Sum_probs=45.5
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CcHHHHHHHHcCCCCCChHHHHHHHHHHh
Q 013306 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDYVYKAIDALPVTAHPMTQFASGVMAL 182 (445)
Q Consensus 122 ~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~--lp~~v~~~i~~lP~~~hPM~~l~~av~aL 182 (445)
+|-+.++++++|+.|++.+.+.|..-|--+.+ +........-.--..++|-..+++|+++|
T Consensus 151 s~~~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg~n~St~aarv~aSt~~d~~savaagi~aL 213 (371)
T 1aj8_A 151 SHAANFLYMLHGEEPPKEWEKAMDVALILYAEHEINASTLAVMTVGSTLSDYYSAILAGIGAL 213 (371)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHhHhcCCCCChhHHHHHHHhhcCCcHHHHHHHHHHHc
Confidence 58899999999999999999999988866652 33333333222234578888999999998
No 21
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=44.95 E-value=66 Score=32.40 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=46.3
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CcHHHHHHHHcCCCCCChHHHHHHHHHHhc
Q 013306 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDYVYKAIDALPVTAHPMTQFASGVMALQ 183 (445)
Q Consensus 122 ~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~--lp~~v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (445)
+|-+.++++++|+.|++.+.+.|..-|--+.+ +...+....-.--..++|-.-+++||++|.
T Consensus 156 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aarv~aSt~~d~~savaagi~aL~ 219 (385)
T 2ifc_A 156 SYAESFLNAAFGRKATKEEIDAMNTALILYTDHEVPASTTAGLVAVSTLSDMYSGITAALAALK 219 (385)
T ss_dssp CHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHhHhcCCCccHHHHHHHHHHhcCCcHHHHHHHHHHHcc
Confidence 58899999999999999999999998876652 444333332222344688889999999983
No 22
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=44.91 E-value=58 Score=32.71 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=46.0
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CcHHHHHHHHcCCCCCChHHHHHHHHHHh
Q 013306 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDYVYKAIDALPVTAHPMTQFASGVMAL 182 (445)
Q Consensus 122 ~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~--lp~~v~~~i~~lP~~~hPM~~l~~av~aL 182 (445)
+|-+.++++++|+.|++.+.+.|..-|--+.+ +.......--.--..++|-..+++|+++|
T Consensus 152 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aaRv~aSt~~d~~savaagi~aL 214 (377)
T 1iom_A 152 SHAANFLYMANGVEPSPEQARLMDAALILHAEHGFNASTFTAIAAFSTETDLYSAITAAVASL 214 (377)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCCchHHHHHHHhhcCCcHHHHHHHHHHHc
Confidence 58899999999999999999999988866652 34433333222234578999999999999
No 23
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica}
Probab=44.56 E-value=66 Score=32.70 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CcH--HHHHHHHcCCCCCChHHHHHHHHHHhc
Q 013306 120 EPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (445)
Q Consensus 120 ~~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~--lp~--~v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (445)
.-++-+.||.+|+|+.|++++.+.|..-|--+.+ +.. ....++.+ ..++|-..+++|+++|.
T Consensus 181 ~ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe~N~St~taRvvaS--t~ad~ysavaagi~aL~ 246 (404)
T 3o8j_A 181 DDSIGGHFLHLLHGEKPTQSWEKAMHISLVLYAEHEFNASTFTSRVIAG--TGSDVYSAIIGAIGALR 246 (404)
T ss_dssp CSSHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSSSHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCCCChHHHHHHHHHh--cCCCHHHHHHHHHHHcc
Confidence 3468999999999999999999999998876652 333 34444444 34679999999999984
No 24
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis}
Probab=44.32 E-value=43 Score=34.17 Aligned_cols=62 Identities=11% Similarity=0.121 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CcH--HHHHHHHcCCCCCChHHHHHHHHHHhcc
Q 013306 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPD--YVYKAIDALPVTAHPMTQFASGVMALQV 184 (445)
Q Consensus 121 ~~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~--lp~--~v~~~i~~lP~~~hPM~~l~~av~aL~~ 184 (445)
-++-+.++.+|+|+.|++.+.+.|..-|--+.+ +.. ....++.+ ..++|-..+++++++|..
T Consensus 195 ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe~NaST~taRvvaS--t~ad~ysavaagi~aL~G 260 (414)
T 3hwk_A 195 LGYAQNFLHMCFGEVPETAVVSAFEQSMILYAEHGFNASTFAARVVTS--TQSDIYSAVTGAIGALKG 260 (414)
T ss_dssp SCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCCCChHHHHHHHHHh--cCCCHHHHHHHHHHHhcC
Confidence 368899999999999999999999998876642 333 33344443 356799999999999843
No 25
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=43.32 E-value=25 Score=34.42 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=37.5
Q ss_pred ChhhHHHHHHHHHhCCCcccccCCCCCCCCCc-cHHHHHHHHHhh
Q 013306 304 TTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDP-RYTCQREFALKH 347 (445)
Q Consensus 304 ~~~~~~~~v~~~l~~g~~IpGfGH~vyr~~DP-Ra~~L~~~a~~~ 347 (445)
+++++++.+++.++.|+-|.+-||-+...++| ..+++.+.++++
T Consensus 302 ~~e~i~~~v~~~l~~~g~I~~~Ghgi~p~tp~env~a~v~av~ey 346 (348)
T 4ay7_A 302 PVDKIKAEAKEALEGGIDVLAPGCGIAPMTPLENVKALVAARDEF 346 (348)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSSCCTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCEEeCCCccCCCCCHHHHHHHHHHHHHh
Confidence 57899999999999999999999999998887 567777777765
No 26
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum}
Probab=43.27 E-value=71 Score=32.46 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=46.0
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CcHHHHHHHHcCCCCCChHHHHHHHHHHhc
Q 013306 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDYVYKAIDALPVTAHPMTQFASGVMALQ 183 (445)
Q Consensus 122 ~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~--lp~~v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (445)
+|-+.++++|+|+.|++.+.+.|..-|--+.+ +........-.--..++|-..+++|+++|.
T Consensus 182 s~a~nfl~ml~g~~p~~~~~~~ld~~LvL~ADHg~naST~aaRv~aSt~ad~~savaagi~aL~ 245 (409)
T 2ibp_A 182 GHAANFLYMMFGREPDPLASRGIDLYLILHADHEVPASTFAAHVVASTLSDLYSSVAAAIAALK 245 (409)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSCCHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHhhcCCcHHHHHHHHHHHcc
Confidence 58899999999999999999999998876652 343333332222345788889999999983
No 27
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=42.86 E-value=72 Score=31.96 Aligned_cols=61 Identities=11% Similarity=0.170 Sum_probs=45.4
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CcHHHHHHHHcCCCCCChHHHHHHHHHHh
Q 013306 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDYVYKAIDALPVTAHPMTQFASGVMAL 182 (445)
Q Consensus 122 ~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~--lp~~v~~~i~~lP~~~hPM~~l~~av~aL 182 (445)
+|-+.++++|+|+.|++.+.+.|..-|--+.+ +........-.--..++|-..+++|+++|
T Consensus 148 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~ST~aaRv~aSt~ad~~savaagi~aL 210 (373)
T 1vgp_A 148 SHSENFLYMLYGDRPNEIKSKAMDVTLILHIDHEMNASTFASLVVASTFSDLYSSIVAGISAL 210 (373)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCCSCCHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCchHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 58899999999999999999999998876652 33333333222234578888899999998
No 28
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii}
Probab=42.52 E-value=77 Score=31.83 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=46.0
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CcHHHHHHHHcCCCCCChHHHHHHHHHHhc
Q 013306 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDYVYKAIDALPVTAHPMTQFASGVMALQ 183 (445)
Q Consensus 122 ~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~--lp~~v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (445)
+|-+.++++++|+.|++.+.+.|..-|--+.+ +...+...--.--..++|-.-+++|+++|.
T Consensus 152 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aaRv~aSt~~d~~savaagi~aL~ 215 (378)
T 1vgm_A 152 SYAESFLAATFGKKPTQEEIKAMDASLILYTDHEVPASTTAALVASSTLSDMYSCIVAALAALK 215 (378)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSCCHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccCCCchHHHHHHHHHhcCCcHHHHHHHHHHhcc
Confidence 68899999999999999999999998866652 444333332222344688888999999983
No 29
>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*
Probab=37.95 E-value=12 Score=32.59 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=19.0
Q ss_pred eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHH
Q 013306 98 IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLL 130 (445)
Q Consensus 98 i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~LL 130 (445)
..|||++++||.+. +.|+++=|+
T Consensus 15 FtyrG~~ld~Ll~m----------s~e~l~~L~ 37 (142)
T 3u5c_P 15 HSYRGVDLEKLLEM----------STEDFVKLA 37 (142)
T ss_dssp CBSSSCBHHHHHTT----------CHHHHHHHS
T ss_pred EEEccccHHHHHcC----------CHHHHHHHh
Confidence 48999999999987 488877663
No 30
>3j20_T 30S ribosomal protein S19P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.86 E-value=12 Score=32.30 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=18.4
Q ss_pred eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHH
Q 013306 98 IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWL 129 (445)
Q Consensus 98 i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~L 129 (445)
..|||++++||.+. +.||++=|
T Consensus 6 ftyrG~~ld~L~~m----------s~~~l~~L 27 (132)
T 3j20_T 6 FRYRGYTLEQLMNM----------SLEELARL 27 (132)
T ss_dssp CCSSSSCHHHHHHH----------HHHHHHHH
T ss_pred EEEcCCcHHHHHcC----------CHHHHHHH
Confidence 47999999999997 47887766
No 31
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis}
Probab=33.81 E-value=95 Score=30.96 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=44.9
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCcHHHHHHHHcCCCCCChHHHHHHHHHHhc
Q 013306 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQ 183 (445)
Q Consensus 122 ~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~--~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (445)
++-+.++++++|+.|++.+.+.|..-|--+. .+...+...--.--..++|-..+++|+++|.
T Consensus 145 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg~n~St~aarv~aSt~~d~~savaagi~aL~ 208 (363)
T 2c6x_A 145 GHVENYYYMLTGEQPSEAKKKALETYMILATEHGMNASTFSARVTLSTESDLVSAVTAALGTMK 208 (363)
T ss_dssp CSHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcCccHHHHHHHHHHHcc
Confidence 5779999999999999999999998875554 2344333332222345688888999999883
No 32
>2xzm_S RPS15E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_S 3j0o_S 3j0l_S 3j0p_S 3j0q_S
Probab=30.19 E-value=17 Score=31.79 Aligned_cols=13 Identities=31% Similarity=0.549 Sum_probs=12.1
Q ss_pred eeecCCCHHHHhh
Q 013306 98 IRFRGLSIPECQK 110 (445)
Q Consensus 98 i~yRGy~I~eL~~ 110 (445)
..|||++++||.+
T Consensus 11 ftyrG~~l~~L~~ 23 (144)
T 2xzm_S 11 FTFRGKGLEELTA 23 (144)
T ss_dssp CCCCTTCHHHHHH
T ss_pred eeecCCcHHHHHh
Confidence 4899999999998
No 33
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1
Probab=27.83 E-value=1.5e+02 Score=29.70 Aligned_cols=60 Identities=13% Similarity=0.177 Sum_probs=45.0
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CcHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 013306 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (445)
Q Consensus 122 ~fEev~~LLl~G~lPt~~e~~~f~~~l~~~~~--lp~~--v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (445)
++-+.+..+|+|+.|++.+.+.|..-|--+.+ +... ...++.+ ..++|-..+++|+++|.
T Consensus 151 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aaRv~aS--t~ad~~savaagi~aL~ 214 (377)
T 1o7x_A 151 SFAKSFLLASFAREPTTDEINAMDKALILYTDHEVPASTTAALVAAS--TLSDMYSSLTAALAALK 214 (377)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSCCHHHHHHHHHHH--TTCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHh--cCCcHHHHHHHHHHhcC
Confidence 58899999999999999999999988866652 3433 3333333 34588888999999983
No 34
>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s
Probab=25.78 E-value=14 Score=32.57 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=0.0
Q ss_pred eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHH
Q 013306 98 IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWL 129 (445)
Q Consensus 98 i~yRGy~I~eL~~~~p~~~~~~~~~fEev~~L 129 (445)
..|||++++||.+. +.|+++=|
T Consensus 24 FtYrG~~ld~Ll~m----------s~eel~~L 45 (154)
T 3iz6_R 24 YSYRGVDLDALLDM----------STDDLVQL 45 (154)
T ss_dssp --------------------------------
T ss_pred EEEecCcHHHHHhC----------CHHHHHHH
Confidence 48999999999987 36776555
No 35
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=22.95 E-value=80 Score=30.45 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=34.2
Q ss_pred ChhhHHHHHHHHHhC----CCcccccCCCCCCCCCc-cHHHHHHHHHhh
Q 013306 304 TTEQLKDYVWKTLNS----GKVVPGFGHGVLRKTDP-RYTCQREFALKH 347 (445)
Q Consensus 304 ~~~~~~~~v~~~l~~----g~~IpGfGH~vyr~~DP-Ra~~L~~~a~~~ 347 (445)
+++++++.+++.++. ++.|.+.||-+....+| ..+.+.+.++++
T Consensus 287 t~e~i~~~v~~~l~~~g~~~g~I~~~g~gi~~~~p~en~~a~v~~v~~~ 335 (338)
T 2eja_A 287 SEEVIEEKTLGLLRRIPVKTRYVFNLGHGLAPDMELEKVKYLVDLVKSF 335 (338)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSEEBCBSSCCCTTSCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHhCCCCCeEEeCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 678999999999875 35799999999887776 556666666654
No 36
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=21.95 E-value=63 Score=31.75 Aligned_cols=44 Identities=23% Similarity=0.434 Sum_probs=33.3
Q ss_pred ChhhHHHHHHHHHhC---CCcccccCCCCCCCCCc-cHHHHHHHHHhh
Q 013306 304 TTEQLKDYVWKTLNS---GKVVPGFGHGVLRKTDP-RYTCQREFALKH 347 (445)
Q Consensus 304 ~~~~~~~~v~~~l~~---g~~IpGfGH~vyr~~DP-Ra~~L~~~a~~~ 347 (445)
+++++++.+++.++. ++-|.+.||-+....+| ..+.+.+.++++
T Consensus 313 t~e~i~~~v~~~l~~~g~~g~I~~~ghgi~~~~p~env~a~v~~v~~~ 360 (367)
T 1r3s_A 313 SEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHKH 360 (367)
T ss_dssp CHHHHHHHHHHHHHHHCSSSEEEEESSCCCTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCeeecCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 578888888888764 47899999999987777 455666666553
No 37
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=21.59 E-value=78 Score=28.10 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=29.6
Q ss_pred HHHHHHhCC---CCCHHHHHHHHHHHHhh-cCCcHHHHHHHH
Q 013306 126 LLWLLLTGK---VPSKEQVDGLSKELRDR-ATVPDYVYKAID 163 (445)
Q Consensus 126 v~~LLl~G~---lPt~~e~~~f~~~l~~~-~~lp~~v~~~i~ 163 (445)
-.-|-+|.+ +-|.+|++++..||..| +.+|+.|.++++
T Consensus 28 ~~RL~lYkria~~~~~eel~~l~~EL~DRFG~lP~~v~~Ll~ 69 (173)
T 2qsr_A 28 RHKIEIYKKIRQIDNRVNYEELQEELIDRFGEYPDVVAYLLE 69 (173)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCcHHHHHHHH
Confidence 344555544 46899999999999888 589999999875
Done!