BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013307
(445 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O74326|CID11_SCHPO Poly(A) RNA polymerase cid11 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid11 PE=3 SV=1
Length = 478
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 113/460 (24%), Positives = 183/460 (39%), Gaps = 76/460 (16%)
Query: 18 LNPLREDWETRMKVISDLREVVESVESLRGATVE--PFGSFVSNLFSRWGDLDISIELSN 75
L P E+ R + + LR ++ + ++ A ++ FGS +NL + D+D+
Sbjct: 58 LKPSNEEVSRRQQFVDKLRTILST--EIKDAKLDLFVFGSTENNLAIQQSDVDV------ 109
Query: 76 GSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDN 135
CI + G K S L L G +++ V+ ARVPI+K +I CD++I+N
Sbjct: 110 --CIITNGSKYLNSTCQ--LAQLLYSYGMKQIVCVSRARVPIVKIWDPQFDIHCDLNINN 165
Query: 136 LCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPK-TGTFNSYSLSLLVLFHFQT 194
+I +K L ID R R + L++K WAK + + +GT SY++S +++ QT
Sbjct: 166 DVAKINTKMLRLFVSIDPRVRPLGLIIKYWAKQRALCDAAGSGTITSYTISCMLVNFLQT 225
Query: 195 CVPAILPPLKDIYPGN----LVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSL 250
P ILP + D+ + VDD+ G + A +N++SL
Sbjct: 226 RNPPILPAMLDLMSNDDNKMFVDDIVGFKEKA---------------------TLNKTSL 264
Query: 251 AHLFVSFLEKFSGLSLKASELGICPFTGQWEHIRSNTRWLPNNHPLFIEDPFEQPENSAR 310
L + F + G S + + +G + + + N+ L +E+PF N A
Sbjct: 265 GRLLIDFF-YYYGFSFNYLDSVVSVRSGTVLNKQEKGWAMEVNNSLCVEEPFNTARNLAN 323
Query: 311 AVSEKNLAKISNAFEMTHFRLTSTNQTRYALLSSLARPFILQFFGESPVRYANYNNGHRR 370
++ + + F+ FRL S N L L E+ Y N N
Sbjct: 324 TADNPSVKGLQSEFQRA-FRLMSENNACERLCKICEEYQFLDITNEA--NYGNTNTPFNT 380
Query: 371 AR----------------------PQSHKSVNS--------PLQAQHQSHNAKKENRPNR 400
A PQ S P ++ HQS+ K NR +
Sbjct: 381 AYESFGCNHTVLPEAAAYPKPYYPPQITLSDGGNMNFLYYIPDESNHQSY-ENKANRDSD 439
Query: 401 SMSQQSVQQHQSQPVRQINGQVQQIWRPKSDGSQQPSPAN 440
Q S+ Q + P I Q +W P D S P+ N
Sbjct: 440 FQGQTSLTQGSAPPWHYIPCQSWLVWYPSEDAS-NPASGN 478
>sp|Q9VD44|GLD2A_DROME Poly(A) RNA polymerase gld-2 homolog A OS=Drosophila melanogaster
GN=Gld2 PE=1 SV=3
Length = 1364
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 143/316 (45%), Gaps = 46/316 (14%)
Query: 54 GSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHA 113
GS +S S+ D+DI + I S + V L + L + ++ + A
Sbjct: 981 GSSISYFGSKCSDMDICMLACTNPNIDSRMEAVYH--LHVMKELLGRTNMFQDFNLI-EA 1037
Query: 114 RVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINN 173
RVPIL+F + DI+ +N G + L+ SQ+D R R M L VK+WA+ H+INN
Sbjct: 1038 RVPILRFTDRCHKVEVDINFNNSVGIRNTHLLYCYSQLDWRVRPMALTVKQWAQYHNINN 1097
Query: 174 PKTGTFNSYSLSLLVLFHFQTCV-PAILPPLKDIYPGNL----VDDLKGVRANAERQIAE 228
K T +SYSL L+V+ Q P +LP L ++YP +D V N E
Sbjct: 1098 AKNMTISSYSLMLMVIHFLQVGASPPVLPCLHNLYPEKFGLLQPNDFGYVDMN------E 1151
Query: 229 ICAFNIARFSSDKYRKINRSSLAHLFVSFLEKFS-------GLSLKASELGICPFTGQWE 281
+ A Y+ N +L L +SFL +S +S++ G+ P E
Sbjct: 1152 VMA---------PYQSDNSQTLGDLLLSFLHYYSVFDYGKYAISIRVG--GVLPI----E 1196
Query: 282 HIRSNTRWLPNN-----HPLFIEDPFEQPENSARAVSEKN-LAKISNAFEMTHFRLTSTN 335
R+ T P N + L IE+PF+Q N+AR+V + + +I F ++ RL ST
Sbjct: 1197 VCRAAT--APKNDIHQWNELCIEEPFDQ-TNTARSVYDTDTFERIKTIFVASYRRLDSTR 1253
Query: 336 QTRYALLSSLARPFIL 351
A+ P IL
Sbjct: 1254 NLS-AIFEDYDGPTIL 1268
>sp|Q91YI6|GLD2_MOUSE Poly(A) RNA polymerase GLD2 OS=Mus musculus GN=Papd4 PE=1 SV=1
Length = 484
Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 129/274 (47%), Gaps = 38/274 (13%)
Query: 54 GSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLR---ALRQKGGYRRLQFV 110
GS ++ +R D D+ + + C +K + + L+ R G R Q +
Sbjct: 201 GSSLNGFGARSSDGDLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLI 260
Query: 111 AHARVPILKFETIHQNISCDISIDNLCGQIKSKFLF-WISQIDGRFRDMVLLVKEWAKAH 169
A+VPI+KF + D++++N G I++ FL + ++ R R +VL++K+WA H
Sbjct: 261 -RAKVPIVKFRDKVSCVEFDLNVNNTVG-IRNTFLLRTYAYLENRVRPLVLVIKKWASHH 318
Query: 170 DINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEI 229
DIN+ GT +SYSL L+VL + QT ILP L+ IYP + + + +
Sbjct: 319 DINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYP-------ESFSTSVQLHLVHH 371
Query: 230 CAFNIARFSSDKYRKINRSSLAHLFVSFLEKFSG--------LSLKASELGICPFTGQWE 281
N+ + S N SSL L + FL+ ++ +S++ ++ P +W
Sbjct: 372 APCNVPPYLSK-----NESSLGDLLLGFLKYYATEFDWNTQMISVREAKAIPRPDDMEWR 426
Query: 282 HIRSNTRWLPNNHPLFIEDPFEQPENSARAVSEK 315
N + +E+PF+ N+ARAV EK
Sbjct: 427 -----------NKYICVEEPFDG-TNTARAVHEK 448
>sp|Q5U315|GLD2_RAT Poly(A) RNA polymerase GLD2 OS=Rattus norvegicus GN=Papd4 PE=2 SV=1
Length = 484
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 129/274 (47%), Gaps = 38/274 (13%)
Query: 54 GSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLR---ALRQKGGYRRLQFV 110
GS ++ +R D D+ + + C +K + + L+ R G R Q +
Sbjct: 201 GSSLNGFGARSSDGDLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLI 260
Query: 111 AHARVPILKFETIHQNISCDISIDNLCGQIKSKFLF-WISQIDGRFRDMVLLVKEWAKAH 169
A+VPI+KF + D++++N G I++ FL + ++ R R +VL++K+WA H
Sbjct: 261 -RAKVPIVKFRDKVSCVEFDLNVNNTVG-IRNTFLLRTYAYLENRVRPLVLVIKKWASHH 318
Query: 170 DINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEI 229
+IN+ GT +SYSL L+VL + QT ILP L+ IYP + + + +
Sbjct: 319 EINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYP-------ESFSTSVQLHLVHH 371
Query: 230 CAFNIARFSSDKYRKINRSSLAHLFVSFLEKFSG--------LSLKASELGICPFTGQWE 281
N+ + S N SSL L + FL+ ++ +S++ ++ P +W
Sbjct: 372 APCNVPPYLSK-----NESSLGDLLLGFLKYYATEFDWNTQMISVREAKAIPRPDDMEWR 426
Query: 282 HIRSNTRWLPNNHPLFIEDPFEQPENSARAVSEK 315
N + +E+PF+ N+ARAV EK
Sbjct: 427 -----------NKYICVEEPFDG-TNTARAVHEK 448
>sp|Q2HJ44|GLD2_BOVIN Poly(A) RNA polymerase GLD2 OS=Bos taurus GN=PAPD4 PE=2 SV=1
Length = 484
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 130/274 (47%), Gaps = 38/274 (13%)
Query: 54 GSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLR---ALRQKGGYRRLQFV 110
GS ++ +R D D+ + + C +K + + L+ R G R Q +
Sbjct: 201 GSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLI 260
Query: 111 AHARVPILKFETIHQNISCDISIDNLCGQIKSKFLF-WISQIDGRFRDMVLLVKEWAKAH 169
A+VPI+KF + D++++N+ G I++ FL + ++ R R +VL++K+WA H
Sbjct: 261 -RAKVPIVKFRDKVSCVEFDLNVNNIVG-IRNTFLLRTYAYLENRVRPLVLVIKKWASHH 318
Query: 170 DINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEI 229
DIN+ GT +SYSL L+VL + QT ILP ++ IYP + + + +
Sbjct: 319 DINDASRGTLSSYSLVLMVLHYLQTLPEPILPSIQKIYP-------ESFSPSIQLHLVHQ 371
Query: 230 CAFNIARFSSDKYRKINRSSLAHLFVSFLEKFSG--------LSLKASELGICPFTGQWE 281
N+ + S N S+L L + FL+ ++ +S++ ++ P +W
Sbjct: 372 APCNVPPYLSK-----NESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDGIEWR 426
Query: 282 HIRSNTRWLPNNHPLFIEDPFEQPENSARAVSEK 315
N + +E+PF+ N+ARAV EK
Sbjct: 427 -----------NKYICVEEPFDG-TNTARAVHEK 448
>sp|Q6PIY7|GLD2_HUMAN Poly(A) RNA polymerase GLD2 OS=Homo sapiens GN=PAPD4 PE=1 SV=1
Length = 484
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 129/274 (47%), Gaps = 38/274 (13%)
Query: 54 GSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLR---ALRQKGGYRRLQFV 110
GS ++ +R D D+ + + C +K + + L+ R G R Q +
Sbjct: 201 GSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLI 260
Query: 111 AHARVPILKFETIHQNISCDISIDNLCGQIKSKFLF-WISQIDGRFRDMVLLVKEWAKAH 169
A+VPI+KF + D++++N+ G I++ FL + ++ R R +VL++K+WA H
Sbjct: 261 -RAKVPIVKFRDKVSCVEFDLNVNNIVG-IRNTFLLRTYAYLENRVRPLVLVIKKWASHH 318
Query: 170 DINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEI 229
IN+ GT +SYSL L+VL + QT ILP L+ IYP + + + +
Sbjct: 319 QINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSPAI-------QLHLVHQ 371
Query: 230 CAFNIARFSSDKYRKINRSSLAHLFVSFLEKFSG--------LSLKASELGICPFTGQWE 281
N+ + S N S+L L + FL+ ++ +S++ ++ P +W
Sbjct: 372 APCNVPPYLSK-----NESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDGIEWR 426
Query: 282 HIRSNTRWLPNNHPLFIEDPFEQPENSARAVSEK 315
N + +E+PF+ N+ARAV EK
Sbjct: 427 -----------NKYICVEEPFDG-TNTARAVHEK 448
>sp|Q9VYS4|GLD2B_DROME Poly(A) RNA polymerase gld-2 homolog B OS=Drosophila melanogaster
GN=wisp PE=1 SV=1
Length = 1373
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 66/98 (67%), Gaps = 3/98 (3%)
Query: 113 ARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWI-SQIDGRFRDMVLLVKEWAKAHDI 171
ARVPIL+F+ I I D++ +N G IK+ +L + +Q+D R R +V++VK WA+ HDI
Sbjct: 1086 ARVPILRFKDISNGIEVDLNFNNCVG-IKNTYLLQLYAQMDWRTRPLVVIVKLWAQYHDI 1144
Query: 172 NNPKTGTFNSYSLSLLVLFHFQ-TCVPAILPPLKDIYP 208
N+ K T +SYSL L+VL + Q CVP +LP L +YP
Sbjct: 1145 NDAKRMTISSYSLVLMVLHYLQHACVPHVLPCLHSLYP 1182
>sp|O13833|CID1_SCHPO Poly(A) RNA polymerase protein cid1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cid1 PE=1 SV=2
Length = 405
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 125/299 (41%), Gaps = 49/299 (16%)
Query: 48 ATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRL 107
A + FGS S L + D+D+ + + + + + + L+ +
Sbjct: 83 AELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIALQFYEELIAEGFEG---------- 132
Query: 108 QFVAHARVPILKFETIHQN-----ISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLV 162
+F+ AR+PI+K + +N CDI +N + L +++D R + MVLLV
Sbjct: 133 KFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMVLLV 192
Query: 163 KEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANA 222
K WAK IN+P GT +SY L+VL++ + I PP ++P L+ LK
Sbjct: 193 KHWAKRKQINSPYFGTLSSYGYVLMVLYYL---IHVIKPP---VFPNLLLSPLK------ 240
Query: 223 ERQIAEICAFNIARFSSDKYRKI----NRSSLAHLFVSFLEKFSGLSLKASELGIC---- 274
Q + F++ DK I N SSL L F +F + E +
Sbjct: 241 --QEKIVDGFDVG--FDDKLEDIPPSQNYSSLGSLLHGFF-RFYAYKFEPREKVVTFRRP 295
Query: 275 ---------PFTGQWEHIRSNTRWLPNNHPLFIEDPFEQPENSARAVSEKNLAKISNAF 324
+T EH S + + + + L IEDPFE N R VS L +I F
Sbjct: 296 DGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEF 354
>sp|Q6DFA8|GLD2B_XENLA Poly(A) RNA polymerase GLD2-B OS=Xenopus laevis GN=papd4-b PE=1
SV=1
Length = 509
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 134/301 (44%), Gaps = 43/301 (14%)
Query: 54 GSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAH- 112
GS ++ R D D+ C+ + + Q+ + +L K Y RL ++
Sbjct: 228 GSSLNGFGIRSSDADL--------CLVLKEEPMNQNTEARHILSLLHKHFYTRLSYIERP 279
Query: 113 ----ARVPILKFETIHQNISCDISIDNLCGQIKSKFLF-WISQIDGRFRDMVLLVKEWAK 167
A+VPI+KF D++++N+ G I++ FL + +D R R +VL++K+WA
Sbjct: 280 QFIRAKVPIVKFRDKVSGAEFDLNVNNVVG-IRNTFLLRTYAYLDKRVRPLVLVIKKWAN 338
Query: 168 AHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIA 227
H IN+ GT +SY++ L+VL + QT ILP L+ YP + + +
Sbjct: 339 HHGINDASRGTLSSYTIVLMVLHYLQTLPEPILPSLQKKYP-------ECFDRTMQLHLV 391
Query: 228 EICAFNIARFSSDKYRKINRSSLAHLFVSFLEKF------SGLSLKASELGICPFTGQWE 281
NI +F S N + L L + FL+ F S + E P T +E
Sbjct: 392 HQAPRNIPQFLSK-----NETPLGDLLLGFLKYFAVEFDWSKDIISLREAKALPRTDDYE 446
Query: 282 HIRSNTRWLPNNHPLFIEDPFEQPENSARAVSEKNLAKISNAFEMTHFRLTSTNQTRYAL 341
W N + +E+PF+ N+ARAV EK + A + + N+ Y+L
Sbjct: 447 -------W--RNKYICVEEPFDG-SNTARAVYEKQKFDLIRAEFLKAWVALRDNRDLYSL 496
Query: 342 L 342
L
Sbjct: 497 L 497
>sp|Q9NVV4|PAPD1_HUMAN Poly(A) RNA polymerase, mitochondrial OS=Homo sapiens GN=MTPAP PE=1
SV=1
Length = 582
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 131/295 (44%), Gaps = 47/295 (15%)
Query: 50 VEPFGSFVSNLFSRWG-DLDISIELSNGSCISS-----------------AGKKVKQSLL 91
V PFGS V N F + G DLD+ ++L +S+ + + Q +L
Sbjct: 227 VRPFGSSV-NTFGKLGCDLDMFLDLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKIL 285
Query: 92 GDLLRALRQKG-GYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQ 150
L L G G +Q + +AR P+++F CD++ +N S+ L+
Sbjct: 286 SVLGECLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCDLTTNNRIALTSSELLYIYGA 345
Query: 151 IDGRFRDMVLLVKEWAKAHDINNPKTGTF-NSYSLSLLVLFHFQTCVPAILPPLKDIYPG 209
+D R R +V V+ WA+AH + + G + ++SL+++V+F Q P ILP L
Sbjct: 346 LDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTL------ 399
Query: 210 NLVDDLKGVRANAERQIAEI--CAF--NIARFSSDKYRKINRSSLAHLFVSFLEKFSGLS 265
D LK + ++ + E C F +++R + N +L L F E F +
Sbjct: 400 ---DSLKTLADAEDKCVIEGNNCTFVRDLSRIKPSQ----NTETLELLLKEFFEYFGNFA 452
Query: 266 LKASELGICPFTGQWEHIRSNTRWLPNNHPLFIEDPFEQPENSARAVSEKNLAKI 320
+ + I R + P++ PL+I++PFE N ++ VS+ L K
Sbjct: 453 FDKNSINI-------RQGREQNK--PDSSPLYIQNPFETSLNISKNVSQSQLQKF 498
>sp|B2RX14|TUT4_MOUSE Terminal uridylyltransferase 4 OS=Mus musculus GN=Zcchc11 PE=1 SV=2
Length = 1644
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 145/331 (43%), Gaps = 37/331 (11%)
Query: 6 VLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWG 65
+L+ + K L+P + R +++ L + ++ E A + FGS + R
Sbjct: 967 ILDLVCKRCFDELSPPCSEQHNREQILIGLEKFIQK-EYDEKARLCLFGSSKNGFGFRDS 1025
Query: 66 DLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQ 125
DLDI + L +A K + ++ +L + L++ G R + + A+VPI+KFE
Sbjct: 1026 DLDICMTLEGHE---NAEKLNCKEIIENLAKILKRHPGLRNILPITTAKVPIVKFEHRRS 1082
Query: 126 NISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLS 185
+ DIS+ N Q ++ L + ID R + + +K +AK DI + G+ +SY+
Sbjct: 1083 GLEGDISLYNTLAQHNTRMLATYAAIDPRVQYLGYTMKVFAKRCDIGDASRGSLSSYAYI 1142
Query: 186 LLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYR-- 243
L+VL+ Q P ++P L++I+ G + +R + AF + K R
Sbjct: 1143 LMVLYFLQQRKPPVIPVLQEIFDGKQI---------PQRMVDGWNAFFFDKTEELKKRLP 1193
Query: 244 --KINRSSLAHLFVSFLEKFSG--------LSLKASELGICPFTGQWEHIRSNTRWLPNN 293
N SL L++ L ++ +S++ +L + F QW +
Sbjct: 1194 SLGKNTESLGELWLGLLRFYTEEFDFKEYVISIRQKKL-LTTFEKQW-----------TS 1241
Query: 294 HPLFIEDPFEQPENSARAVSEKNLAKISNAF 324
+ IEDPF+ N VS K I AF
Sbjct: 1242 KCIAIEDPFDLNHNLGAGVSRKMTNFIMKAF 1272
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 83/181 (45%), Gaps = 10/181 (5%)
Query: 23 EDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSA 82
+D R ++ ++ +V+ + L ++ +GS ++ + D++I I+
Sbjct: 391 DDLRIRQDIVEEMSKVIMTF--LPECSLRLYGSSLTKFALKSSDVNIDIKF--------P 440
Query: 83 GKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKS 142
K LL +L L++ Y ++ HA+VP++ + + C +S N + +
Sbjct: 441 PKMNHPDLLIQVLGILKKSALYIDVESDFHAKVPVVVCKDRKSALLCRVSAGNDMACLTT 500
Query: 143 KFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPP 202
L + +++ F +VL + WAK I++ G SY +L+V+F Q P +LP
Sbjct: 501 DLLAALGKVEPVFTPLVLAFRYWAKLCYIDSQTDGGIPSYCFALMVMFFLQQRKPPLLPC 560
Query: 203 L 203
L
Sbjct: 561 L 561
>sp|Q5TAX3|TUT4_HUMAN Terminal uridylyltransferase 4 OS=Homo sapiens GN=ZCCHC11 PE=1 SV=3
Length = 1644
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 145/331 (43%), Gaps = 37/331 (11%)
Query: 6 VLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWG 65
+L+ + K L+P + R +++ L + ++ E A + FGS + R
Sbjct: 950 ILDLVCKRCFDELSPPCSEQHNREQILIGLEKFIQK-EYDEKARLCLFGSSKNGFGFRDS 1008
Query: 66 DLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQ 125
DLDI + L +A K + ++ +L + L++ G R + + A+VPI+KFE
Sbjct: 1009 DLDICMTLEGHE---NAEKLNCKEIIENLAKILKRHPGLRNILPITTAKVPIVKFEHRRS 1065
Query: 126 NISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLS 185
+ DIS+ N Q ++ L + ID R + + +K +AK DI + G+ +SY+
Sbjct: 1066 GLEGDISLYNTLAQHNTRMLATYAAIDPRVQYLGYTMKVFAKRCDIGDASRGSLSSYAYI 1125
Query: 186 LLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYR-- 243
L+VL+ Q P ++P L++I+ G + +R + AF + K R
Sbjct: 1126 LMVLYFLQQRKPPVIPVLQEIFDGKQI---------PQRMVDGWNAFFFDKTEELKKRLP 1176
Query: 244 --KINRSSLAHLFVSFLEKFSG--------LSLKASELGICPFTGQWEHIRSNTRWLPNN 293
N SL L++ L ++ +S++ +L + F QW +
Sbjct: 1177 SLGKNTESLGELWLGLLRFYTEEFDFKEYVISIRQKKL-LTTFEKQW-----------TS 1224
Query: 294 HPLFIEDPFEQPENSARAVSEKNLAKISNAF 324
+ IEDPF+ N VS K I AF
Sbjct: 1225 KCIAIEDPFDLNHNLGAGVSRKMTNFIMKAF 1255
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 133/332 (40%), Gaps = 55/332 (16%)
Query: 23 EDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSA 82
+D R +++ ++ +V+ + L ++ +GS ++ + D++I I+
Sbjct: 371 DDLRVRQEIVEEMSKVITTF--LPECSLRLYGSSLTRFALKSSDVNIDIKF--------P 420
Query: 83 GKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKS 142
K LL +L L++ Y ++ HA+VP++ + C +S N + +
Sbjct: 421 PKMNHPDLLIKVLGILKKNVLYVDVESDFHAKVPVVVCRDRKSGLLCRVSAGNDMACLTT 480
Query: 143 KFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPP 202
L + +I+ F +VL + WAK I++ G SY +L+V+F Q P +LP
Sbjct: 481 DLLTALGKIEPVFIPLVLAFRYWAKLCYIDSQTDGGIPSYCFALMVMFFLQQRKPPLLPC 540
Query: 203 L-----KDIYPGNLVD-DLKGV-------------RANAERQIAE--------------- 228
L + P + D LKG+ A + IAE
Sbjct: 541 LLGSWIEGFDPKRMDDFQLKGIVEEKFVKWECNSSSATEKNSIAEENKAKADQPKDDTKK 600
Query: 229 ICAFNIARFSSDKYRKI-------NRSSLAHLFVSFLEKFSGLSLKASELGICPFTGQWE 281
N + +K+ K NR SL L++ L KF L E IC Q
Sbjct: 601 TETDNQSNAMKEKHGKSPLALETPNRVSLGQLWLELL-KFYTLDFALEEYVIC-VRIQDI 658
Query: 282 HIRSNTRWLPNNHPLFIEDPFEQPENSARAVS 313
R N W P + IEDPF N AR+++
Sbjct: 659 LTRENKNW-PKRR-IAIEDPFSVKRNVARSLN 688
>sp|Q641A1|GLD2A_XENLA Poly(A) RNA polymerase GLD2-A OS=Xenopus laevis GN=papd4-a PE=1
SV=1
Length = 509
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 137/297 (46%), Gaps = 27/297 (9%)
Query: 54 GSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGY-RRLQFVAH 112
GS ++ +R D D+ + L +LG L + + Y RLQF+
Sbjct: 228 GSSLNGFGTRISDADLCLVLKEEPMNQHTEAT---QILGLLHKLFYTRLSYIERLQFI-R 283
Query: 113 ARVPILKFETIHQNISCDISIDNLCGQIKSKFLF-WISQIDGRFRDMVLLVKEWAKAHDI 171
A+VPI+KF D++++N+ G I++ FL + ++ R R +VL++K+WA H I
Sbjct: 284 AKVPIVKFRDKVSGAEFDLNVNNVVG-IRNTFLLRTYAYLESRVRPLVLVIKKWANHHGI 342
Query: 172 NNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPG--NLVDDLKGVRANAERQIAEI 229
N+ GT +SY+L L+VL + QT ILP L+ YP +L L V +A R I
Sbjct: 343 NDASRGTLSSYTLVLMVLHYLQTLPEPILPSLQKKYPECFDLSMQLNLVH-HAPRNIP-- 399
Query: 230 CAFNIARFSSDKYRKINRSSLAHLFVSFLEKFSGLSLKASELGICPFTGQWEHIRSNTRW 289
Y N + L L + FL+ F+ + S+ I G+ + W
Sbjct: 400 -----------PYLSKNETPLGDLLLGFLKYFA-VEFDWSKDIISVREGKALPRSDDYLW 447
Query: 290 LPNNHPLFIEDPFEQPENSARAVSEKNLAKISNAFEMTHFRLTSTNQTRYALLSSLA 346
N + +E+PF+ N+ARAV E+ + A + + ++ Y+LL A
Sbjct: 448 --RNKYICVEEPFDG-TNTARAVYERQKFDMIRAEFLKAWGALRDDRDLYSLLPVTA 501
>sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1
Length = 584
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 97/191 (50%), Gaps = 12/191 (6%)
Query: 11 LKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDIS 70
+KD + ++P RE+ E R + IS +RE V+ + A + FGS+ ++L+ D+D
Sbjct: 183 IKDFVAYISPSREEIEIRNQTISTIREAVKQL--WPDADLHVFGSYSTDLYLPGSDIDCV 240
Query: 71 IELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCD 130
+ S G K ++ L L L++K ++ VA ARVPI+KF H I D
Sbjct: 241 V-------TSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHID 293
Query: 131 ISIDNLCGQIKSKFL-FWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVL 189
+S + G +K + W+ G R++VL+VK++ A +NN TG +S+ LV
Sbjct: 294 VSFERTNGIEAAKLIREWLDDTPG-LRELVLIVKQFLHARRLNNVHTGGLGGFSIICLV- 351
Query: 190 FHFQTCVPAIL 200
F F P I+
Sbjct: 352 FSFLHMHPRII 362
>sp|Q503I9|GLD2_DANRE Poly(A) RNA polymerase GLD2 OS=Danio rerio GN=papd4 PE=2 SV=1
Length = 489
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 150/332 (45%), Gaps = 31/332 (9%)
Query: 21 LREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCIS 80
L + R + +D++++ + G GS ++ SR D D+ + + G
Sbjct: 180 LEKKESCRAALQTDIQKIFPCAKVFLG------GSSLNGFGSRSSDADLCLVIEEGP--- 230
Query: 81 SAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQI 140
+ + L+R L K Y + A+VPI+KF + D++ +N G I
Sbjct: 231 -VNHRKDAVYVLSLVRKLLYKLSYIEKPQLIRAKVPIVKFRDRISGVEFDLNFNNTVG-I 288
Query: 141 KSKFLF-WISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAI 199
++ FL + ++ R R +VL++K+WA H IN+ GT +SY+L L+VL + QT +
Sbjct: 289 RNTFLLRTYAFVEKRVRPLVLVIKKWANHHCINDASRGTLSSYTLVLMVLHYLQTLPEPV 348
Query: 200 LPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLE 259
+P L+ YP D K ++I AF ++R N+SSL LF+ FL
Sbjct: 349 IPCLQRDYPTCF--DPKMDIHLVPSGPSDIPAF-VSR---------NQSSLGDLFLGFLR 396
Query: 260 KFSGLSLKASELGICPFTGQWEHIRSNTRWLPNNHPLFIEDPFEQPENSARAVSEK-NLA 318
++ + K + I + + W + + +E+PF + N+ARAV E+
Sbjct: 397 YYATV-FKWDKQVISVRMARTLPKSNCKEW--KDKFICVEEPFNR-TNTARAVHERMKFE 452
Query: 319 KISNAFEMTHFRLTSTNQTRYALLSS--LARP 348
I AF +H L + L S +ARP
Sbjct: 453 AIKAAFIESHRLLQLRKDLNFILPKSKQMARP 484
>sp|Q9D0D3|PAPD1_MOUSE Poly(A) RNA polymerase, mitochondrial OS=Mus musculus GN=Mtpap PE=2
SV=1
Length = 585
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 127/296 (42%), Gaps = 47/296 (15%)
Query: 48 ATVEPFGSFVSNLFSRWG-DLDISIELSNGSCIS-----------------SAGKKVKQS 89
+ PFGS V N F + G DLD+ ++L + + + Q
Sbjct: 228 CVIRPFGSSV-NTFGKLGCDLDMFLDLDETGKLDVHKNTGNFFMEFQVKNVPSERIATQK 286
Query: 90 LLGDLLRALRQKG-GYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWI 148
+L + L G G +Q + +AR P+++F CD++ +N S+ L+
Sbjct: 287 ILSVIGECLDNFGPGCVGVQKILNARCPLVRFSHQGSGFQCDLTANNSIALKSSELLYIY 346
Query: 149 SQIDGRFRDMVLLVKEWAKAHDINNPKTGTF-NSYSLSLLVLFHFQTCVPAILPPLKDIY 207
+D R R +V V+ WA+AH + + G + ++SL+++V+F Q P ILP L
Sbjct: 347 GSLDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTVMVIFFLQRRSPPILPTL---- 402
Query: 208 PGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKI----NRSSLAHLFVSFLEKFSG 263
D LK + +R I E N F D KI N +L L F E F
Sbjct: 403 -----DSLKSIADAEDRCILE---GNNCTFVQD-VNKIQPSGNTETLELLIKEFFEYFGN 453
Query: 264 LSLKASELGICPFTGQWEHIRSNTRWLPNNHPLFIEDPFEQPENSARAVSEKNLAK 319
+ + + I R + P++ PL+I++PFE N ++ VS+ L K
Sbjct: 454 FAFNKNSINI-------RQGREQNK--PDSSPLYIQNPFETSLNISKNVSQSQLQK 500
>sp|Q0VFA3|GLD2_XENTR Poly(A) RNA polymerase GLD2 OS=Xenopus tropicalis GN=papd4 PE=2
SV=1
Length = 528
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 134/301 (44%), Gaps = 43/301 (14%)
Query: 54 GSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAH- 112
GS ++ +R D D+ C+ + + Q + +L K Y RL ++
Sbjct: 247 GSSLNGFGTRSSDADL--------CLVLKDEPMNQHTEARHILSLLHKHFYTRLSYIERP 298
Query: 113 ----ARVPILKFETIHQNISCDISIDNLCGQIKSKFLF-WISQIDGRFRDMVLLVKEWAK 167
A+VPI+KF D++++N+ G I++ FL + I+ R R +VL++K WA
Sbjct: 299 QFIKAKVPIVKFRDKVSGAEFDLNVNNVVG-IRNTFLLRTYAYIENRVRPLVLVIKMWAN 357
Query: 168 AHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIA 227
H +N+ GT +SY+L L+ L + QT I+P L+ YP + + + +
Sbjct: 358 YHGLNDASRGTLSSYTLVLMALHYLQTLPEPIIPSLQKKYP-------ECFDSTMQLHLV 410
Query: 228 EICAFNIARFSSDKYRKINRSSLAHLFVSFLEKF------SGLSLKASELGICPFTGQWE 281
NI ++ S N + L L + FL+ F S + E P + +E
Sbjct: 411 HHAPRNIPKYLSK-----NETPLGDLLLGFLKYFAIEFDWSKDIISVREAKALPRSDDYE 465
Query: 282 HIRSNTRWLPNNHPLFIEDPFEQPENSARAVSEKNLAKISNAFEMTHFRLTSTNQTRYAL 341
W N + +E+P+++ N+ARAV E+ + A + + N+ Y+L
Sbjct: 466 -------W--RNKFICVEEPYDR-TNTARAVYERQKFDMIRAEFLRAWVALRDNRDLYSL 515
Query: 342 L 342
L
Sbjct: 516 L 516
>sp|D2HS90|STPAP_AILME Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Ailuropoda
melanoleuca GN=TUT1 PE=3 SV=1
Length = 869
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 119/275 (43%), Gaps = 38/275 (13%)
Query: 65 GDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIH 124
GDL ++EL+ L+G +LR G R+Q V AR P++KF
Sbjct: 317 GDLGKALELAEALSGEKTEGVAMLELVGSILRGCVP--GVYRVQTVPSARRPVVKFCHRP 374
Query: 125 QNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSL 184
+ D+S+ N S+FL S++DGR R +V ++ WA+ ++ ++Y+L
Sbjct: 375 SGLHGDVSLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGLSG-SGPLLSNYAL 433
Query: 185 SLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEI----CAFNIARFSSD 240
+LLV++ QT P +LP + + + E + E+ C+F R +S
Sbjct: 434 TLLVIYFLQTRDPPVLPTVSQL-----------TQKAGEGEQVEVDGWDCSF--PRDASG 480
Query: 241 KYRKINRSSLAHLFVSFLEKFSGLSLKASELGI-----CPFTG-----QWEHIRSNTRWL 290
N+ L+ L F S L+ S L + P G +WE +R
Sbjct: 481 LEPSTNKEPLSSLLAQFFSCVSCWDLRGSLLSLREGQALPVAGDLPSNRWEGLRLG---- 536
Query: 291 PNNHPLFIEDPFEQPENSARAVSEKNLAKISNAFE 325
P+ ++DPF+ N A V+ + ++ N+ +
Sbjct: 537 ----PMNLQDPFDLSHNVAANVTSRVAGRLQNSCQ 567
>sp|Q9H6E5|STPAP_HUMAN Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Homo
sapiens GN=TUT1 PE=1 SV=2
Length = 874
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 116/272 (42%), Gaps = 36/272 (13%)
Query: 65 GDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIH 124
GDL + EL+ A L+G +LR G R+Q V AR P++KF
Sbjct: 318 GDLGKASELAETPKEEKAEGAAMLELVGSILRGCVP--GVYRVQTVPSARRPVVKFCHRP 375
Query: 125 QNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSL 184
+ D+S+ N S+FL S++DGR R +V ++ WA+ ++ ++Y+L
Sbjct: 376 SGLHGDVSLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGLSG-SGPLLSNYAL 434
Query: 185 SLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYR- 243
+LLV++ QT P +LP + + + E + E+ ++ + F D R
Sbjct: 435 TLLVIYFLQTRDPPVLPTVSQL-----------TQKAGEGEQVEVDGWDCS-FPRDASRL 482
Query: 244 --KINRSSLAHLFVSFLEKFSGLSLKASELGI-----CPFTGQ-----WEHIRSNTRWLP 291
IN L+ L F S L+ S L + P G WE +R
Sbjct: 483 EPSINVEPLSSLLAQFFSCVSCWDLRGSLLSLREGQALPVAGGLPSNLWEGLRLG----- 537
Query: 292 NNHPLFIEDPFEQPENSARAVSEKNLAKISNA 323
PL ++DPF+ N A V+ + ++ N
Sbjct: 538 ---PLNLQDPFDLSHNVAANVTSRVAGRLQNC 566
>sp|Q1JPD6|STPAP_BOVIN Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Bos taurus
GN=TUT1 PE=2 SV=1
Length = 871
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 117/269 (43%), Gaps = 32/269 (11%)
Query: 65 GDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIH 124
GD ++EL+ A L+G +LR G R+Q V AR P++KF
Sbjct: 318 GDQGKAVELAEALKGEKAEGGAMLELVGSILRGCVP--GVYRVQTVPSARCPVVKFCHRP 375
Query: 125 QNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSL 184
+ DIS+ N S+FL S++DGR R +V ++ WA+ ++ N+Y+L
Sbjct: 376 SGLHGDISLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGLSG-SGPLLNNYAL 434
Query: 185 SLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYR- 243
+LLV++ QT P +LP + + A Q+ E+ ++ + F D R
Sbjct: 435 TLLVIYFLQTRDPPVLPTVSQLT------------QKAGEQV-EVDGWDCS-FPRDASRL 480
Query: 244 --KINRSSLAHLFVSFLEKFSGLSLKASELGICPFTGQWEHIRSNTRWLPNN-------H 294
N+ L+ L F S L+ S L + GQ + LP+N
Sbjct: 481 EPSTNKEPLSSLLAQFFSCVSCWDLRGSLLSL--REGQALSVAGG---LPSNLSEGLRLG 535
Query: 295 PLFIEDPFEQPENSARAVSEKNLAKISNA 323
P+ ++DPF+ N A V+ + ++ N
Sbjct: 536 PMNLQDPFDLSHNVAANVTSRVAGRLQNC 564
>sp|Q5BLK4|TUT7_MOUSE Terminal uridylyltransferase 7 OS=Mus musculus GN=Zcchc6 PE=1 SV=3
Length = 1491
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 99/210 (47%), Gaps = 15/210 (7%)
Query: 5 NVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRW 64
N+L+ + +P + + R + +L ++ + G + FGS + +
Sbjct: 995 NILDQVCVQCYKDFSPTIVEDQAREHIRQNLESFIK--QDFPGTKLSLFGSSKNGFGFKQ 1052
Query: 65 GDLDISIELSNGSCISSAGKKVKQSL-----LGDLLRALRQKGGYRRLQFVAHARVPILK 119
DLD+ C++ G + + L + +L R LR+ G R + + A+VPI+K
Sbjct: 1053 SDLDV--------CMTINGHETAEGLDCVRTIEELARVLRKHSGLRNILPITTAKVPIVK 1104
Query: 120 FETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTF 179
F + + DIS+ N ++ L S ID R + + +K + K DI + G+
Sbjct: 1105 FFHLRSGLEVDISLYNTLALHNTRLLSAYSAIDPRVKYLCYTMKVFTKMCDIGDASRGSL 1164
Query: 180 NSYSLSLLVLFHFQTCVPAILPPLKDIYPG 209
+SY+ +L+VL+ Q P ++P L++IY G
Sbjct: 1165 SSYAYTLMVLYFLQQRSPPVIPVLQEIYKG 1194
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 85/184 (46%), Gaps = 14/184 (7%)
Query: 34 DLREVVESV--ESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLL 91
+++ V+ESV L ++ +GS S L R D D++I++ + +S + +L
Sbjct: 318 EIKRVMESVFRHKLPDCSLRLYGSSCSRLGFR--DSDVNIDVQFPAVMS------QPDVL 369
Query: 92 GDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQI 151
+ L+ + + HARVP++ + C +S N + +K L + ++
Sbjct: 370 LLVQECLKNSDSFIDVDADFHARVPVVVCRDKQSGLLCKVSAGNENAWLTTKHLTALGKL 429
Query: 152 DGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNL 211
+ R +V+ + WAK I+ P+ G Y +L+ +F Q +LP +Y G+
Sbjct: 430 EPRLVPLVIAFRYWAKLCSIDRPEEGGLPPYVFALMAVFFLQQRKEPLLP----VYLGSW 485
Query: 212 VDDL 215
+++
Sbjct: 486 IEEF 489
>sp|Q5VYS8|TUT7_HUMAN Terminal uridylyltransferase 7 OS=Homo sapiens GN=ZCCHC6 PE=1 SV=1
Length = 1495
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 15/182 (8%)
Query: 35 LREVVESV--ESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSL-- 90
+R+ +ES + G + FGS + + DLD+ C++ G + + L
Sbjct: 1025 IRQNLESFIRQDFPGTKLSLFGSSKNGFGFKQSDLDV--------CMTINGLETAEGLDC 1076
Query: 91 ---LGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFW 147
+ +L R LR+ G R + + A+VPI+KF + + DIS+ N ++ L
Sbjct: 1077 VRTIEELARVLRKHSGLRNILPITTAKVPIVKFFHLRSGLEVDISLYNTLALHNTRLLSA 1136
Query: 148 ISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIY 207
S ID R + + +K + K DI + G+ +SY+ +L+VL+ Q P ++P L++IY
Sbjct: 1137 YSAIDPRVKYLCYTMKVFTKMCDIGDASRGSLSSYAYTLMVLYFLQQRNPPVIPVLQEIY 1196
Query: 208 PG 209
G
Sbjct: 1197 KG 1198
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 87/193 (45%), Gaps = 18/193 (9%)
Query: 23 EDWETRMKVISDLREVVESV--ESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCIS 80
E+ E R+++ + ++E+V L ++ +GS S L + D++I I+ I
Sbjct: 311 ENLEQRLEI----KRIMENVFQHKLPDCSLRLYGSSCSRLGFKNSDVNIDIQFP---AIM 363
Query: 81 SAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQI 140
S + +L + L+ + + HARVP++ + C +S N +
Sbjct: 364 S-----QPDVLLLVQECLKNSDSFIDVDADFHARVPVVVCREKQSGLLCKVSAGNENACL 418
Query: 141 KSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAIL 200
+K L + +++ + +V+ + WAK I+ P+ G Y +L+ +F Q +L
Sbjct: 419 TTKHLTALGKLEPKLVPLVIAFRYWAKLCSIDRPEEGGLPPYVFALMAIFFLQQRKEPLL 478
Query: 201 PPLKDIYPGNLVD 213
P +Y G+ ++
Sbjct: 479 P----VYLGSWIE 487
>sp|O17087|GLD2_CAEEL Poly(A) RNA polymerase gld-2 OS=Caenorhabditis elegans GN=gld-2
PE=1 SV=2
Length = 1113
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 122/261 (46%), Gaps = 17/261 (6%)
Query: 5 NVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRW 64
+VL + D ++ E + ++ + L + V L G V GS ++ +
Sbjct: 547 DVLSEKIWDYHNKVSQTDEMLQRKLHLRDMLYTAISPVFPLSGLYV--VGSSLNGFGNNS 604
Query: 65 GDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILK--FET 122
D+D+ + ++N +K ++ +L+ + Q + Q + A+VPIL+ F
Sbjct: 605 SDMDLCLMITNKDL----DQKNDAVVVLNLILSTLQYEKFVESQKLILAKVPILRINFAA 660
Query: 123 IHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSY 182
+I+ D++ +N + L + S D R R +V +VKEWAK IN+ +F SY
Sbjct: 661 PFDDITVDLNANNSVAIRNTHLLCYYSSYDWRVRPLVSVVKEWAKRKGINDANKSSFTSY 720
Query: 183 SLSLLVLFHFQTCVPA-ILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDK 241
SL L+V+ HF C P +LP L+ YP + + N + E+ A +I + S+K
Sbjct: 721 SLVLMVI-HFLQCGPTKVLPNLQQSYPNRFSNKVDVRTLNVTMALEEV-ADDIDQSLSEK 778
Query: 242 YRKINRSSLAHLFVSFLEKFS 262
++L L + FL+ ++
Sbjct: 779 ------TTLGELLIGFLDYYA 793
>sp|Q4KMD7|STPAP_DANRE Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Danio
rerio GN=tut1 PE=2 SV=1
Length = 797
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 129/320 (40%), Gaps = 67/320 (20%)
Query: 50 VEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQ-------------SLLGD--- 93
+ PFGS V+ DLD+ ++L N + K +Q S+L D
Sbjct: 200 IVPFGSSVNTFGLHSCDLDLFLDLENTKVFQARAKSSEQTGENQSEDCRSEDSILSDIDL 259
Query: 94 ----------LLRALRQKG--GYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIK 141
L+ + +K G ++Q ++ AR+P++KF N+ DI+I+N
Sbjct: 260 STASPAEILELVAVILRKCVPGVHKVQALSTARLPVVKFSHKELNLQGDITINNRLAVRN 319
Query: 142 SKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTG---TFNSYSLSLLVLFHFQTCVPA 198
+KFL S ID R R +V ++ WAK + +G N+Y+L+LLV+F Q P
Sbjct: 320 TKFLQLCSGIDSRLRPLVYTIRLWAKQKQLAGNLSGPGPLLNNYALTLLVIFFLQNRDPP 379
Query: 199 ILPPLKDIYPGNLVDDLKGVRANAERQIAEI--CAFNIARFSSDKYRKINRSSLAHLFVS 256
+LP V+ LK + E E C F FS + N L L
Sbjct: 380 VLPS---------VNQLKNMACEEEECAIEEWDCTFPSQPFSVPPSK--NTEDLCTLLFG 428
Query: 257 FLEKFSGLSLKASELG-----ICPFTGQWEHIRSNTRWL---------------PNNHPL 296
F +S AS + + P T + ++S+ L P P+
Sbjct: 429 FFTFYSKFDFPASVVSLRDGHVLPIT---DFLKSDMEALKTADASSPKPKRSSAPRLGPM 485
Query: 297 FIEDPFEQPENSARAVSEKN 316
+ DPFE N A ++E+
Sbjct: 486 NVLDPFELNHNVAGNLNERT 505
>sp|Q9UT49|CID13_SCHPO Poly(A) RNA polymerase cid13 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid13 PE=1 SV=1
Length = 578
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 127/315 (40%), Gaps = 30/315 (9%)
Query: 26 ETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKK 85
E R + L ++++ + FGS S L S D+D+ I C + +
Sbjct: 70 ERRYAFVQKLEQILKKEFPYKNIKTSLFGSTQSLLASNASDIDLCIITDPPQCAPTTCE- 128
Query: 86 VKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFL 145
+ A + G +++ ++ A+VPI+K +SCD +I+ + ++ +
Sbjct: 129 ---------VSAAFARNGLKKVVCISTAKVPIVKVWDSELQLSCDCNINKTISTLNTRLM 179
Query: 146 FWISQIDGRFRDMVLLVKEWAKAHDINN-PKTGTFNSYSLSLLVLFHFQTCVPAILPPLK 204
D R R +++++K WAK +N+ + GT SY++S +V+ Q P ILP L+
Sbjct: 180 RSYVLCDPRVRPLIVMIKYWAKRRCLNDAAEGGTLTSYTISCMVINFLQKRDPPILPSLQ 239
Query: 205 DIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDK----YRKINRSSLAHLFVSFLEK 260
++ L+ + +++ F + N SL LFV F +
Sbjct: 240 ------MLPHLQDSSTMTD-------GLDVSFFDDPDLVHGFGDKNEESLGILFVEFF-R 285
Query: 261 FSGLSLKASELGICPFTGQWEHIRSNTRWLPNNHPLFIEDPFEQPENSARAVSEKNLAKI 320
F G + G + R+ N+ L +E+PF N A E + I
Sbjct: 286 FFGYLFDYEHFVLSIRHGTFLSKRAKGWQFQLNNFLCVEEPFHTSRNLANTADEITMKGI 345
Query: 321 SNAFEMTHFRLTSTN 335
F FRL + N
Sbjct: 346 QLEFRRV-FRLLAYN 359
>sp|Q3MHT4|STPAP_RAT Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Rattus
norvegicus GN=Tut1 PE=2 SV=1
Length = 866
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 104/241 (43%), Gaps = 40/241 (16%)
Query: 90 LLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWIS 149
L+G +LR G R+Q V AR P++KF + DIS+ N S+FL S
Sbjct: 344 LVGSILRGCVP--GVYRVQTVPSARRPVVKFCHRPSGLHGDISLSNRLALYNSRFLNLCS 401
Query: 150 QIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPG 209
++D R R +V ++ WA+ + ++ N+Y+L+LLV++ QT P +LP + +
Sbjct: 402 EMDSRVRPLVYTLRCWAQHNGLSG-GGPLLNNYALTLLVIYFLQTRDPPVLPTVAQL--- 457
Query: 210 NLVDDLKGVRANAERQIAEICAFNIARFSSDKYR---KINRSSLAHLFVSFLEKFSGLSL 266
+ + E + E+ ++ + F D R N L+ L F S L
Sbjct: 458 --------TQRSGEGEQVEVDGWDCS-FPKDASRLEPSTNVEPLSSLLAQFFSCVSCWDL 508
Query: 267 KASELGICPFTGQ------------WEHIRSNTRWLPNNHPLFIEDPFEQPENSARAVSE 314
S L + GQ WE +R P+ ++DPF+ N A V+
Sbjct: 509 SGSLLSL--REGQALMVAGGLPSDLWEGLRLG--------PMNLQDPFDLSHNVAANVTS 558
Query: 315 K 315
+
Sbjct: 559 R 559
>sp|P48561|TRF5_YEAST Poly(A) RNA polymerase protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TRF5 PE=1 SV=2
Length = 642
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 12/190 (6%)
Query: 11 LKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDIS 70
+KD + ++P + + + R + I LR V+ + S A + FGSF ++L+ D+D
Sbjct: 180 IKDFVHYISPSKNEIKCRNRTIDKLRRAVKELWS--DADLHVFGSFATDLYLPGSDIDCV 237
Query: 71 IELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCD 130
+ N K ++ + +L R L+ KG R++ + RVPI+KF + D
Sbjct: 238 VNSRNRD-------KEDRNYIYELARHLKNKGLAIRMEVIVKTRVPIIKFIEPQSQLHID 290
Query: 131 ISIDNLCGQIKSKFLF-WISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVL 189
+S + G +K + W+ G R++VL++K++ + +NN TG +++ LV
Sbjct: 291 VSFERTNGLEAAKLIREWLRDSPG-LRELVLIIKQFLHSRRLNNVHTGGLGGFTVICLV- 348
Query: 190 FHFQTCVPAI 199
+ F P I
Sbjct: 349 YSFLNMHPRI 358
>sp|O13798|CID16_SCHPO Caffeine-induced protein 16 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=cid16 PE=4 SV=1
Length = 1202
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 124/280 (44%), Gaps = 27/280 (9%)
Query: 50 VEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQF 109
+ FGS+ + L ++ DLD+ I S+ + +VK + + + +G
Sbjct: 924 IACFGSYRTGLMTKNSDLDLVI-YSSKEALLPYYDRVKSIIKNEFSNVMPIRG------- 975
Query: 110 VAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAH 169
AR+PI+KF T NI CD+S DNL S + S ID R + +++LVK WA
Sbjct: 976 ---ARIPIIKF-TGQYNIHCDLSFDNLLPIHNSDLILNYSLIDERVKTLLMLVKYWASNR 1031
Query: 170 DINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEI 229
I+ +SY+ ++V+F+ Q ILP L+ + K VR N +
Sbjct: 1032 LIDKTHHAFPSSYTWCIMVIFYLQQIPEPILPNLQKLSTQY----SKIVRDNDYGNVN-- 1085
Query: 230 CAFN----IARFSSDKYRKINRSSLAHLFVSFLEKFSGLSLKASELGICPFTGQWEHIRS 285
C FN R S K RK N + L F + + S I + Q + R
Sbjct: 1086 CWFNRDTECYRGSMQKGRK-NIALLLRGFFCYYGLTTQYSFDWEAYMIDISSSQLK--RK 1142
Query: 286 NTRWLPNNHPLFIEDPFEQPENSARAVSEKNLAKISNAFE 325
+T + + P + DPF + +N +A+++K++ + E
Sbjct: 1143 STEF--KDCPFVVLDPFLKKKNLTKALTQKSVKVVRYELE 1180
>sp|Q8R3F9|STPAP_MOUSE Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Mus
musculus GN=Tut1 PE=1 SV=1
Length = 869
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 90 LLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWIS 149
L+G +LR G R+Q V AR P++KF + D+S+ N S+FL S
Sbjct: 346 LVGSILRGCVP--GVYRVQTVPSARRPVVKFCHRPSGLHGDVSLSNRLALYNSRFLNLCS 403
Query: 150 QIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILP 201
++DGR R +V ++ WA+ + ++ N+Y+L+LLV++ QT P +LP
Sbjct: 404 EMDGRVRPLVYTLRCWAQHNGLSG-GGPLLNNYALTLLVIYFLQTRDPPVLP 454
>sp|A9JTS5|STPAP_XENTR Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Xenopus
tropicalis GN=tut1 PE=2 SV=1
Length = 843
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 96/224 (42%), Gaps = 25/224 (11%)
Query: 103 GYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLV 162
G +Q V AR P++ F+ + D++++N S FL S +D R +V V
Sbjct: 316 GVHGVQSVPTARRPVIHFQHKTSGLRGDVTLNNRLALRNSSFLRLCSDLDARVPQLVYTV 375
Query: 163 KEWAKAHDI-NNPKTGT--FNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVR 219
+ WA+ + + NP G N+Y+L+LLV F QT P +LP L + R
Sbjct: 376 RYWARVNQLAGNPFGGGPLLNNYALTLLVFFFLQTRNPPVLPTLVHL------------R 423
Query: 220 ANAERQIAEICAFNIARFSSDKYR---KINRSSLAHLFVSFLEKFSGLSLKASELGICPF 276
++ ++ F SD + N+ SL+ L F ++ L L L +CP
Sbjct: 424 EETANEVPQVIDGWDCSFPSDPAQVKESGNQQSLSSLLSEFFSFYASLDLHL--LILCPC 481
Query: 277 TGQWEHIRSNT---RWLPNNH--PLFIEDPFEQPENSARAVSEK 315
G + ++ W PL I+DPFE N VS +
Sbjct: 482 NGLTIPLPFSSPPPAWSEGFRLGPLNIQDPFELSHNVCGNVSSR 525
>sp|Q9HFW3|TRF5_ASHGO Poly(A) RNA polymerase protein 1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TRF5
PE=3 SV=1
Length = 626
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 96/199 (48%), Gaps = 14/199 (7%)
Query: 11 LKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDIS 70
+KD + ++P + + + R + +R+ V+ A + FGS+ ++L+ D+D
Sbjct: 199 IKDFVSYISPNKTEIQLRNDALKRIRDAVQDF--WPDANLHCFGSYATDLYLPGSDIDCV 256
Query: 71 IELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCD 130
+ S +G K ++ L L L++ G ++ +A ARVPI+KF I D
Sbjct: 257 VN-------SKSGDKDNKNALYSLASYLKRNGLATQVSVIAKARVPIIKFVEPASQIHID 309
Query: 131 ISIDNLCGQIKSKFL-FWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVL 189
+S + G +K + W+ G R++VL+VK++ A +N+ G +S+ + +
Sbjct: 310 LSFERTNGVEAAKIIRGWLHDTPG-LRELVLIVKQFLHARRLNDVHIGGLGGFSI-ICLA 367
Query: 190 FHFQTCVPAILPPLKDIYP 208
+ F P I+ +DI P
Sbjct: 368 YSFLKLHPRII--CRDIEP 384
>sp|G5EFL0|GLD4_CAEEL Poly(A) RNA polymerase gld-4 OS=Caenorhabditis elegans GN=gld-4
PE=1 SV=1
Length = 845
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 127/320 (39%), Gaps = 61/320 (19%)
Query: 13 DILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIE 72
D+ + P + R KV +R+ V + + FGS +NLF D+D+ +E
Sbjct: 86 DMYHWIKPNEIESRLRTKVFEKVRDSVLRRWKQKTIKISMFGSLRTNLFLPTSDIDVLVE 145
Query: 73 LSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDIS 132
+ + + G L + R L + A VPI+K +S DIS
Sbjct: 146 CDD--WVGTPG-----DWLAETARGLEADNIAESVMVYGGAFVPIVKMVDRDTRLSIDIS 198
Query: 133 IDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHF 192
+ + G + ++ + + +VLL+K++ ++N TG +SY L LL++ F
Sbjct: 199 FNTVQGVRAASYIAKVKEEFPLIEPLVLLLKQFLHYRNLNQTFTGGLSSYGLVLLLVNFF 258
Query: 193 QTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAH 252
Q +Y N+ R I + R +N L H
Sbjct: 259 Q------------LYALNM----------RSRTIYD--------------RGVN---LGH 279
Query: 253 LFVSFLEKFSGLSLKASELGICPFTGQWEHI---RSNTRW-----LPNNHPLFIEDPFEQ 304
L + FLE +S L E+GI P GQ +I S R+ P N L +EDP
Sbjct: 280 LLLRFLELYS-LEFNFEEMGISP--GQCCYIPKSASGARYGHKQAQPGN--LALEDPLLT 334
Query: 305 PENSARAVSEKNLAKISNAF 324
+ R S N + I+NAF
Sbjct: 335 ANDVGR--STYNFSSIANAF 352
>sp|Q68ED3|PAPD5_MOUSE PAP-associated domain-containing protein 5 OS=Mus musculus GN=Papd5
PE=2 SV=2
Length = 633
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 21/195 (10%)
Query: 11 LKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDIS 70
+ D ++P E+ + RM+V+S + V++ E A V+ FGSF + L+ D+D+
Sbjct: 138 ISDFYEYMSPRPEEEKMRMEVVSRIESVIK--ELWPSADVQIFGSFKTGLYLPTSDIDLV 195
Query: 71 IELSNGSCISSAGKKVKQSLLGDLLRALRQK--GGYRRLQFVAHARVPILKFETIHQNIS 128
+ K + L L ALR+ ++ + A VPI+K +
Sbjct: 196 V-----------FGKWENLPLWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVK 244
Query: 129 CDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLV 188
DIS + G + + ++ +VL++K++ D+N TG SYSL L+
Sbjct: 245 VDISFNVQNGVRAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMA 304
Query: 189 LFHFQ------TCVP 197
+ Q C+P
Sbjct: 305 VSFLQLHPREDACIP 319
>sp|Q8NDF8|PAPD5_HUMAN PAP-associated domain-containing protein 5 OS=Homo sapiens GN=PAPD5
PE=1 SV=2
Length = 572
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 21/195 (10%)
Query: 11 LKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDIS 70
+ D ++P E+ + RM+V++ + V++ E A V+ FGSF + L+ D+D+
Sbjct: 124 ISDFYEYMSPRPEEEKMRMEVVNRIESVIK--ELWPSADVQIFGSFKTGLYLPTSDIDLV 181
Query: 71 IELSNGSCISSAGKKVKQSLLGDLLRALRQK--GGYRRLQFVAHARVPILKFETIHQNIS 128
+ K + L L ALR+ ++ + A VPI+K +
Sbjct: 182 VF-----------GKWENLPLWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVK 230
Query: 129 CDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLV 188
DIS + G + + ++ +VL++K++ D+N TG SYSL L+
Sbjct: 231 VDISFNVQNGVRAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMA 290
Query: 189 LFHFQ------TCVP 197
+ Q C+P
Sbjct: 291 VSFLQLHPREDACIP 305
>sp|Q6PB75|PAPD7_MOUSE DNA polymerase sigma OS=Mus musculus GN=Papd7 PE=2 SV=1
Length = 542
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 15/178 (8%)
Query: 18 LNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGS 77
++P E+ R +V+ + VV+ + A V+ FGSF + L+ D+D+ +
Sbjct: 1 MSPCPEEAAMRREVVKRIETVVKDLWPT--ADVQIFGSFSTGLYLPTSDIDLVV------ 52
Query: 78 CISSAGKKVKQSLLGDLLRALRQKGGYR--RLQFVAHARVPILKFETIHQNISCDISIDN 135
K ++ L L +ALR+ ++ + A VPI+K + DIS +
Sbjct: 53 -----FGKWERPPLQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNM 107
Query: 136 LCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQ 193
G ++F+ + ++L++K++ D+N TG +SYSL L+ + Q
Sbjct: 108 ETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ 165
>sp|Q5XG87|PAPD7_HUMAN DNA polymerase sigma OS=Homo sapiens GN=PAPD7 PE=1 SV=2
Length = 542
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 15/178 (8%)
Query: 18 LNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGS 77
++P E+ R +V+ + VV+ + A V+ FGSF + L+ D+D+ +
Sbjct: 1 MSPCPEEAAMRREVVKRIETVVKDLWPT--ADVQIFGSFSTGLYLPTSDIDLVV------ 52
Query: 78 CISSAGKKVKQSLLGDLLRALRQKGGYR--RLQFVAHARVPILKFETIHQNISCDISIDN 135
K ++ L L +ALR+ ++ + A VPI+K + DIS +
Sbjct: 53 -----FGKWERPPLQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNM 107
Query: 136 LCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQ 193
G ++F+ + ++L++K++ D+N TG +SYSL L+ + Q
Sbjct: 108 ETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ 165
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1
Length = 739
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 42/209 (20%)
Query: 14 ILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIEL 73
+LG LN L ++W + IS+ + + SV + G + FGS+ + ++ D+D
Sbjct: 63 VLGKLNNLVKEW---ISDISESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADID----- 114
Query: 74 SNGSCISSAGKKVKQS-LLGDLLRALRQKGGYRRLQFVAHARVPILKFE----------- 121
C+ A + V++S L+ + G R L+ V A VP++KFE
Sbjct: 115 --ALCV--APRHVERSDFFQSFFEKLKHQDGIRNLRAVEDAFVPVIKFEFDGIEIDLVFA 170
Query: 122 -----TIHQNI---------SCDI-SIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWA 166
TI N+ S DI I +L G + + + FR + VK WA
Sbjct: 171 RLAIQTISDNLDLRDDSRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWA 230
Query: 167 KAHDINNPKTGTFNSYSLSLLVLFHFQTC 195
K I + G S ++LV +TC
Sbjct: 231 KRRGIYSNMLGFLGGVSWAMLVA---RTC 256
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2
Length = 736
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 44/210 (20%)
Query: 14 ILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIEL 73
+LG LN L ++W + +S+ + + SV + G + FGS+ + ++ D+D
Sbjct: 63 VLGKLNNLVKEW---ISDVSESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADID----- 114
Query: 74 SNGSCISSAGKKVKQS-LLGDLLRALRQKGGYRRLQFVAHARVPILKFE----------- 121
C+ A + V++S L+ + G R L+ V A VP++KFE
Sbjct: 115 --ALCV--APRHVERSDFFQSFFEKLKHQDGIRNLRAVEDAFVPVIKFEFDGIEIDLVFA 170
Query: 122 -----TIHQNI---------SCDI-SIDNLCG-QIKSKFLFWISQIDGRFRDMVLLVKEW 165
TI N+ S DI I +L G ++ + L + + FR + VK W
Sbjct: 171 RLAIQTISDNLDLRDDSRLRSLDIRCIRSLNGCRVTDEILHLVPNKET-FRLTLRAVKLW 229
Query: 166 AKAHDINNPKTGTFNSYSLSLLVLFHFQTC 195
AK I + G S ++LV +TC
Sbjct: 230 AKRRGIYSNMLGFLGGVSWAMLVA---RTC 256
>sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a
PE=2 SV=1
Length = 715
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 96/222 (43%), Gaps = 44/222 (19%)
Query: 2 GSYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLF 61
G + E + ILG LN L ++W ++ IS+L+ + +SV G + FG + +
Sbjct: 34 GVFEEEEQLQHRILGKLNNLVKEW---IREISELKHLPQSVIENVGGKIFTFGPYRLGVH 90
Query: 62 SRWGDLDISIELSNGSCISSAGKKVKQS-LLGDLLRALRQKGGYRRLQFVAHARVPILK- 119
++ D+D C+ A + V +S L+Q+ + L+ V A VP++K
Sbjct: 91 TKGADID-------ALCV--APRHVDRSDFFSSFYDKLKQQEEVKDLRSVEEAFVPVIKL 141
Query: 120 -FETIHQNI-----------------------SCDI-SIDNLCG-QIKSKFLFWISQIDG 153
F+ I +I + DI I +L G ++ + L + ID
Sbjct: 142 CFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDS 201
Query: 154 RFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTC 195
FR + +K WAK H+I + G S ++LV +TC
Sbjct: 202 -FRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVA---RTC 239
>sp|P51006|PAPO3_XENLA Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis PE=2 SV=1
Length = 400
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 41/202 (20%)
Query: 15 LGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELS 74
LG LN L ++W ++ IS+L+ + +SV G + FGS+ + ++ D+D
Sbjct: 62 LGKLNNLVKEW---IREISELKNLPQSVIENVGGKIFTFGSYRLGVHTKGADID------ 112
Query: 75 NGSCISSAGKKVKQS-LLGDLLRALRQKGGYRRLQFVAHARVPILK--FETIHQNI---- 127
C+ A + V +S L L+Q+ + L+ V A VP++K F+ I +I
Sbjct: 113 -ALCV--APRHVDRSDLFSSFYEKLKQQEEVKDLRSVEEAFVPVIKLCFDGIEIDILFAR 169
Query: 128 -------------------SCDI-SIDNLCG-QIKSKFLFWISQIDGRFRDMVLLVKEWA 166
+ DI I +L G ++ + L + ID FR + +K WA
Sbjct: 170 LALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDS-FRLTLRAIKLWA 228
Query: 167 KAHDINNPKTGTFNSYSLSLLV 188
K H+I + G S ++LV
Sbjct: 229 KRHNIYSNILGFLGGVSWAMLV 250
>sp|Q9UTN3|CID14_SCHPO Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid14 PE=1 SV=2
Length = 684
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 130/345 (37%), Gaps = 68/345 (19%)
Query: 12 KDILGMLN---PLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLD 68
+DIL ++ P E+ R ++S + + V ++ ++ FGSF + L+ DLD
Sbjct: 243 QDILHFIDYITPTPEEHAVRKTLVSRINQAV--LQKWPDVSLYVFGSFETKLYLPTSDLD 300
Query: 69 ISIELSNGSCISSA----GKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIH 124
+ I IS G K +L L+ L+ +Q + A VPI+KF
Sbjct: 301 LVI-------ISPEHHYRGTKKDMFVLAHHLKKLKLAS---EVQVITTANVPIIKFVDPL 350
Query: 125 QNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSL 184
+ DIS + G + + R +V+++K + +N G +SY++
Sbjct: 351 TKVHVDISFNQPGGLKTCLVVNGFMKKYPALRPLVIIIKHFLNMRALNEVFLGGLSSYAI 410
Query: 185 SLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRK 244
LV+ Q ++P R S+ R+
Sbjct: 411 VCLVVSFLQ------------LHP---------------------------RLSTGSMRE 431
Query: 245 INRSSLAHLFVSFLEKFSGLSLKASELGICPFTGQWEHIRSNTRWLPNNHP--LFIEDPF 302
+ L + FLE + G +GI G + + WL N P L I+DP
Sbjct: 432 --EDNFGVLLLEFLELY-GKQFYYDAVGIAVHNGGFYFSKKKMGWLKPNQPYLLSIQDPV 488
Query: 303 EQPENSARAVSEKNLAKISNAFEMTHFRLTSTNQTRYALLSSLAR 347
+ + ++ S + L ++ F LTS YAL S + R
Sbjct: 489 DFQNDVSK--SSRGLLRVKATFANGFDLLTS---KLYALASRIER 528
>sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4
Length = 745
Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 44/210 (20%)
Query: 14 ILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIEL 73
ILG LN L ++W ++ IS+ + + +SV G + FGS+ + ++ D+D
Sbjct: 64 ILGKLNNLVKEW---IREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADID----- 115
Query: 74 SNGSCISSAGKKVKQS-LLGDLLRALRQKGGYRRLQFVAHARVPILK--FETIHQNI--- 127
C+ A + V +S L+ + + L+ V A VP++K F+ I +I
Sbjct: 116 --ALCV--APRHVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFA 171
Query: 128 --------------------SCDI-SIDNLCG-QIKSKFLFWISQIDGRFRDMVLLVKEW 165
+ DI I +L G ++ + L + ID FR + +K W
Sbjct: 172 RLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDN-FRLTLRAIKLW 230
Query: 166 AKAHDINNPKTGTFNSYSLSLLVLFHFQTC 195
AK H+I + G S ++LV +TC
Sbjct: 231 AKRHNIYSNILGFLGGVSWAMLVA---RTC 257
>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4
Length = 739
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 44/210 (20%)
Query: 14 ILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIEL 73
ILG LN L ++W ++ IS+ + + +SV G + FGS+ + ++ D+D
Sbjct: 64 ILGKLNNLVKEW---IREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADID----- 115
Query: 74 SNGSCISSAGKKVKQS-LLGDLLRALRQKGGYRRLQFVAHARVPILK--FETIHQNI--- 127
C+ A + V +S L+ + + L+ V A VP++K F+ I +I
Sbjct: 116 --ALCV--APRHVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFA 171
Query: 128 --------------------SCDI-SIDNLCG-QIKSKFLFWISQIDGRFRDMVLLVKEW 165
+ DI I +L G ++ + L + ID FR + +K W
Sbjct: 172 RLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDN-FRLTLRAIKLW 230
Query: 166 AKAHDINNPKTGTFNSYSLSLLVLFHFQTC 195
AK H+I + G S ++LV +TC
Sbjct: 231 AKRHNIYSNILGFLGGVSWAMLVA---RTC 257
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3
Length = 739
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 44/210 (20%)
Query: 14 ILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIEL 73
ILG LN L ++W ++ IS+ + + +SV G + FGS+ + ++ D+D
Sbjct: 64 ILGKLNNLVKEW---IREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADID----- 115
Query: 74 SNGSCISSAGKKVKQS-LLGDLLRALRQKGGYRRLQFVAHARVPILK--FETIHQNI--- 127
C+ A + V +S L+ + + L+ V A VP++K F+ I +I
Sbjct: 116 --ALCV--APRHVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFA 171
Query: 128 --------------------SCDI-SIDNLCG-QIKSKFLFWISQIDGRFRDMVLLVKEW 165
+ DI I +L G ++ + L + ID FR + +K W
Sbjct: 172 RLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDN-FRLTLRAIKLW 230
Query: 166 AKAHDINNPKTGTFNSYSLSLLVLFHFQTC 195
AK H+I + G S ++LV +TC
Sbjct: 231 AKRHNIYSNILGFLGGVSWAMLVA---RTC 257
>sp|Q8Z3I0|PNP_SALTI Polyribonucleotide nucleotidyltransferase OS=Salmonella typhi
GN=pnp PE=3 SV=1
Length = 711
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 24/122 (19%)
Query: 112 HARVPILKFETIHQNISCDISID-NLCGQI---------KSKFLFWISQIDGRFRDMVLL 161
+A+V ++K ETI Q I+ D ++D N G+I +S+ L +IDGR +DM+
Sbjct: 267 YAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMI-- 324
Query: 162 VKEWAKAHDINNPKTGTF-NSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRA 220
+ D+ +TG ++ +L Q V A L +D ++D+L G R
Sbjct: 325 -----RGLDV---RTGVLPRTHGSALFTRGETQALVTATLGTARD---AQVLDELMGERT 373
Query: 221 NA 222
++
Sbjct: 374 DS 375
>sp|Q8ZLT3|PNP_SALTY Polyribonucleotide nucleotidyltransferase OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=pnp PE=1 SV=1
Length = 711
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 24/122 (19%)
Query: 112 HARVPILKFETIHQNISCDISID-NLCGQI---------KSKFLFWISQIDGRFRDMVLL 161
+A+V ++K ETI Q I+ D ++D N G+I +S+ L +IDGR +DM+
Sbjct: 267 YAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMI-- 324
Query: 162 VKEWAKAHDINNPKTGTF-NSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRA 220
+ D+ +TG ++ +L Q V A L +D ++D+L G R
Sbjct: 325 -----RGLDV---RTGVLPRTHGSALFTRGETQALVTATLGTARD---AQVLDELMGERT 373
Query: 221 NA 222
++
Sbjct: 374 DS 375
>sp|B5BGJ1|PNP_SALPK Polyribonucleotide nucleotidyltransferase OS=Salmonella paratyphi A
(strain AKU_12601) GN=pnp PE=3 SV=1
Length = 711
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 24/122 (19%)
Query: 112 HARVPILKFETIHQNISCDISID-NLCGQI---------KSKFLFWISQIDGRFRDMVLL 161
+A+V ++K ETI Q I+ D ++D N G+I +S+ L +IDGR +DM+
Sbjct: 267 YAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMI-- 324
Query: 162 VKEWAKAHDINNPKTGTF-NSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRA 220
+ D+ +TG ++ +L Q V A L +D ++D+L G R
Sbjct: 325 -----RGLDV---RTGVLPRTHGSALFTRGETQALVTATLGTARD---AQVLDELMGERT 373
Query: 221 NA 222
++
Sbjct: 374 DS 375
>sp|C0PZ50|PNP_SALPC Polyribonucleotide nucleotidyltransferase OS=Salmonella paratyphi C
(strain RKS4594) GN=pnp PE=3 SV=2
Length = 711
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 24/122 (19%)
Query: 112 HARVPILKFETIHQNISCDISID-NLCGQI---------KSKFLFWISQIDGRFRDMVLL 161
+A+V ++K ETI Q I+ D ++D N G+I +S+ L +IDGR +DM+
Sbjct: 267 YAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMI-- 324
Query: 162 VKEWAKAHDINNPKTGTF-NSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRA 220
+ D+ +TG ++ +L Q V A L +D ++D+L G R
Sbjct: 325 -----RGLDV---RTGVLPRTHGSALFTRGETQALVTATLGTARD---AQVLDELMGERT 373
Query: 221 NA 222
++
Sbjct: 374 DS 375
>sp|A9N728|PNP_SALPB Polyribonucleotide nucleotidyltransferase OS=Salmonella paratyphi B
(strain ATCC BAA-1250 / SPB7) GN=pnp PE=3 SV=2
Length = 711
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 24/122 (19%)
Query: 112 HARVPILKFETIHQNISCDISID-NLCGQI---------KSKFLFWISQIDGRFRDMVLL 161
+A+V ++K ETI Q I+ D ++D N G+I +S+ L +IDGR +DM+
Sbjct: 267 YAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMI-- 324
Query: 162 VKEWAKAHDINNPKTGTF-NSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRA 220
+ D+ +TG ++ +L Q V A L +D ++D+L G R
Sbjct: 325 -----RGLDV---RTGVLPRTHGSALFTRGETQALVTATLGTARD---AQVLDELMGERT 373
Query: 221 NA 222
++
Sbjct: 374 DS 375
>sp|Q5PL97|PNP_SALPA Polyribonucleotide nucleotidyltransferase OS=Salmonella paratyphi A
(strain ATCC 9150 / SARB42) GN=pnp PE=3 SV=1
Length = 711
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 24/122 (19%)
Query: 112 HARVPILKFETIHQNISCDISID-NLCGQI---------KSKFLFWISQIDGRFRDMVLL 161
+A+V ++K ETI Q I+ D ++D N G+I +S+ L +IDGR +DM+
Sbjct: 267 YAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMI-- 324
Query: 162 VKEWAKAHDINNPKTGTF-NSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRA 220
+ D+ +TG ++ +L Q V A L +D ++D+L G R
Sbjct: 325 -----RGLDV---RTGVLPRTHGSALFTRGETQALVTATLGTARD---AQVLDELMGERT 373
Query: 221 NA 222
++
Sbjct: 374 DS 375
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,551,213
Number of Sequences: 539616
Number of extensions: 6171456
Number of successful extensions: 19570
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 18813
Number of HSP's gapped (non-prelim): 701
length of query: 445
length of database: 191,569,459
effective HSP length: 121
effective length of query: 324
effective length of database: 126,275,923
effective search space: 40913399052
effective search space used: 40913399052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)