Query 013307
Match_columns 445
No_of_seqs 216 out of 1381
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 08:07:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e8f_A Poly(A) RNA polymerase 100.0 1.3E-57 4.5E-62 467.5 30.3 311 3-344 40-376 (405)
2 4fh3_A Poly(A) RNA polymerase 100.0 4.9E-55 1.7E-59 441.7 26.8 311 5-342 14-346 (349)
3 3nyb_A Poly(A) RNA polymerase 100.0 2.9E-55 9.8E-60 438.5 22.7 289 4-347 18-322 (323)
4 3pq1_A Poly(A) RNA polymerase; 100.0 8.2E-53 2.8E-57 434.1 26.9 288 4-336 131-440 (464)
5 3hj4_A Minor editosome-associa 100.0 1.6E-53 5.4E-58 428.5 20.9 315 1-334 1-367 (384)
6 2ikf_A RNA uridylyl transferas 100.0 1.3E-52 4.4E-57 424.5 22.9 301 5-332 26-349 (353)
7 2b4v_A RNA editing complex pro 100.0 1.4E-50 4.6E-55 420.2 23.6 303 4-343 17-452 (468)
8 1q79_A Poly(A) polymerase alph 100.0 2.2E-44 7.6E-49 377.1 25.5 273 6-343 37-363 (514)
9 2hhp_A Poly(A) polymerase; tem 100.0 1.2E-43 3.9E-48 373.0 27.1 273 6-343 24-350 (530)
10 1r89_A TRNA nucleotidyltransfe 99.7 6.8E-15 2.3E-19 150.3 23.4 232 7-329 3-247 (437)
11 1px5_A 2'-5'-oligoadenylate sy 99.5 5.3E-12 1.8E-16 127.0 21.8 266 10-334 10-330 (349)
12 4at7_A Interleukin enhancer-bi 98.6 1.3E-05 4.5E-10 79.2 24.0 246 5-335 25-299 (364)
13 1no5_A Hypothetical protein HI 97.7 0.00019 6.5E-09 59.9 9.6 42 32-75 14-55 (114)
14 4at7_B NF90, interleukin enhan 97.5 0.015 5E-07 58.0 21.0 238 14-343 19-337 (383)
15 1ylq_A Putative nucleotidyltra 97.5 9.2E-05 3.2E-09 59.9 4.3 43 31-75 3-46 (96)
16 2rff_A Putative nucleotidyltra 97.2 0.00027 9.1E-09 58.9 4.8 51 25-75 9-61 (111)
17 1wot_A Putative minimal nucleo 97.1 0.00021 7.3E-09 58.0 2.7 30 46-75 24-53 (98)
18 4ebj_A Aminoglycoside nucleoti 96.3 0.0027 9.3E-08 59.6 4.2 50 26-75 17-68 (272)
19 1kny_A Kntase, kanamycin nucle 95.5 0.0067 2.3E-07 57.6 3.1 28 48-75 32-59 (253)
20 2fmp_A DNA polymerase beta; nu 92.8 0.59 2E-05 46.0 10.8 130 30-172 157-292 (335)
21 2bcq_A DNA polymerase lambda; 91.5 0.55 1.9E-05 46.3 8.6 126 30-172 154-286 (335)
22 3jz0_A Lincosamide nucleotidyl 88.2 0.42 1.4E-05 46.1 4.6 56 17-75 13-69 (287)
23 1jaj_A DNA polymerase beta-lik 83.5 0.88 3E-05 40.5 4.0 104 45-171 29-135 (174)
24 2ihm_A POL MU, DNA polymerase 83.4 2.2 7.5E-05 42.3 7.3 65 30-105 161-225 (360)
25 3b0x_A DNA polymerase beta fam 83.1 6 0.0002 41.7 10.9 114 31-172 166-279 (575)
26 1jms_A Terminal deoxynucleotid 73.4 9 0.00031 38.2 8.2 67 30-105 181-247 (381)
27 2pbe_A AAD6, aminoglycoside 6- 68.3 14 0.00047 35.4 8.0 43 30-75 8-53 (294)
28 1v4a_A Glutamate-ammonia-ligas 40.0 27 0.00094 35.3 4.9 29 47-75 154-182 (440)
29 3er9_B Poly(A) polymerase cata 36.3 12 0.0004 37.3 1.3 109 5-130 135-253 (479)
30 3k7d_A Glutamate-ammonia-ligas 33.3 48 0.0017 34.1 5.6 30 47-76 234-263 (498)
31 2fcl_A Hypothetical protein TM 31.7 27 0.00093 30.5 2.9 43 28-71 15-60 (169)
32 3nku_A DRRA, SIDM; posttransla 25.0 2.7E+02 0.0093 23.3 7.7 52 25-76 62-115 (213)
33 3c18_A Nucleotidyltransferase- 24.6 73 0.0025 30.4 4.6 41 35-75 6-48 (290)
No 1
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=1.3e-57 Score=467.51 Aligned_cols=311 Identities=24% Similarity=0.358 Sum_probs=260.4
Q ss_pred cccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCcEEEEecccccCCCCCCCCcceEEeecCCCccccc
Q 013307 3 SYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSA 82 (445)
Q Consensus 3 ~~~~L~~ei~~f~~~~~Pt~ee~~~R~~vi~~l~~il~~~~~~~~~~v~~fGS~~tGl~l~~SDIDl~i~~~~~~~iss~ 82 (445)
..+.|+.+|.+|++++.||++|.+.|..+++.|++++++. +|+++|.+|||+++|+++++||||++|..+....
T Consensus 40 ~~~~L~~~i~~~~~~i~Pt~eE~~~R~~v~~~l~~~i~~~--~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~~~---- 113 (405)
T 4e8f_A 40 SHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRI--SPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQ---- 113 (405)
T ss_dssp SCHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHH--CTTCEEEEESHHHHTCCBSSCCEEEEEECCC-------
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeeccCCCCCCCCCEEEEEEecCCCC----
Confidence 4578999999999999999999999999999999999998 7899999999999999999999999998765221
Q ss_pred chhhHHHHHHHHHHHHHhcCCceEEEEecccccceEEEE-eecc----ceEEEEeecccccccccHHHhHHhcccchhHH
Q 013307 83 GKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFE-TIHQ----NISCDISIDNLCGQIKSKFLFWISQIDGRFRD 157 (445)
Q Consensus 83 ~k~~~~~~L~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~-~~~~----gi~~DIs~~n~~g~~~s~ll~~~~~~~~~~r~ 157 (445)
...++..+++.|++. ..+++.|.+||||||||. +..+ |+.|||||+|..|+.+|.+++.|.+.+|++|+
T Consensus 114 ----~~~~l~~l~~~L~~~--~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~~n~~g~~~t~ll~~y~~~~p~~r~ 187 (405)
T 4e8f_A 114 ----SDTIALQFYEELIAE--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKP 187 (405)
T ss_dssp ----CTTHHHHHHHHHHHT--TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEESCHHHHHHHHHHHHHHHHCTTHHH
T ss_pred ----HHHHHHHHHHHHHhc--CCeeEEeccCCCcEEEEEeccCCCccCceEEEEeecccchHHHHHHHHHHHhhCHHHHH
Confidence 113778888888876 568889999999999999 7667 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCcchHHHHHHHHHh-hhcCCCCCCCccccCCCCCCCcccccchhhhhHHHHHhhccccc
Q 013307 158 MVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHF-QTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIAR 236 (445)
Q Consensus 158 Lv~~iK~Wak~rgL~~~~~G~Lssy~l~lMvi~fL-Q~~~p~ilP~Lq~l~~~~~~~~~~~~~~~~e~~~~e~~~~n~~~ 236 (445)
|+++||+||+.+||++++.||||||+|++|||+|| |...||+||+||++++.... ...|++. .
T Consensus 188 Lv~~lK~wak~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~-~~~g~~~---------------~ 251 (405)
T 4e8f_A 188 MVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEK-IVDGFDV---------------G 251 (405)
T ss_dssp HHHHHHHHHHHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCC-EETTEEC---------------C
T ss_pred HHHHHHHHHHHcCCCcCcCCCcChHHHHHHHHHHHHhccCCCcCCchhhccccccc-ccCCeee---------------c
Confidence 99999999999999999999999999999999999 77789999999998764211 1111111 1
Q ss_pred ccc---cccccCCCCCHHHHHHHHHHhhc-cCCCCcccceeecc-CCceeeecccCCCCC-------------CCCCeEE
Q 013307 237 FSS---DKYRKINRSSLAHLFVSFLEKFS-GLSLKASELGICPF-TGQWEHIRSNTRWLP-------------NNHPLFI 298 (445)
Q Consensus 237 ~~~---~~~~~~n~~sl~~LL~~FF~~Ys-~~df~~~~~~Is~~-~g~~~~~~~~~~~~~-------------~~~~L~I 298 (445)
|.. ..+...|..++|+||++||+||| .||| .+.+||++ .|+...+ ..+.|.. .+++|||
T Consensus 252 f~~~l~~~~~~~n~~slg~LL~~FF~yY~~~Fd~--~~~vIsir~~g~~~~K-~~k~w~~~~~~~g~~~~~~~~~~~L~I 328 (405)
T 4e8f_A 252 FDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEP--REKVVTFRRPDGYLTK-QEKGWTSATEHTGSADQIIKDRYILAI 328 (405)
T ss_dssp CCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCT--TTBEECSSSTTCCCBH-HHHTCCC-------------CCCSSEE
T ss_pred cccchhhhccccccccHHHHHHHHHHHHhcccCC--CCcEEEEecCCccccc-ccccccccccccccccccccCCceEEE
Confidence 111 12345678899999999999999 5666 56899998 6765432 2334532 3568999
Q ss_pred ecCCCCCCCccccCCHHHHHHHHHHHHHHHHHhhcc--CCCcchhhhc
Q 013307 299 EDPFEQPENSARAVSEKNLAKISNAFEMTHFRLTST--NQTRYALLSS 344 (445)
Q Consensus 299 ~DPf~~~~Nvar~vs~~~~~~I~~~f~~A~~~L~~~--~~~~~s~L~~ 344 (445)
+|||++++|+||+|+..++..|+.+|++|+++|... ...|..+|+.
T Consensus 329 eDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~~~~~w~~Lf~~ 376 (405)
T 4e8f_A 329 EDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSYPIPYDSLFEE 376 (405)
T ss_dssp BCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSSSSCCGGGGGSC
T ss_pred ECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhhccCCCHHHHhCc
Confidence 999999999999999999999999999999999987 3456666543
No 2
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=4.9e-55 Score=441.75 Aligned_cols=311 Identities=23% Similarity=0.343 Sum_probs=242.2
Q ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCcEEEEecccccCCCCCCCCcceEEeecCCCcccccch
Q 013307 5 NVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGK 84 (445)
Q Consensus 5 ~~L~~ei~~f~~~~~Pt~ee~~~R~~vi~~l~~il~~~~~~~~~~v~~fGS~~tGl~l~~SDIDl~i~~~~~~~iss~~k 84 (445)
..|...|.++++.+.||++|.+.|.++++.|+++|++. +|+++|++|||+++|+++++||||++|..+...
T Consensus 14 ~el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~--~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~------- 84 (349)
T 4fh3_A 14 KEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRI--SPDAELVAFGSLESGLALKNSDMDLCVLMDSRV------- 84 (349)
T ss_dssp HHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTT--CTTCEEEEESHHHHTCCBSSCCEEEEEECCTTS-------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeeccCCCCCCCCCEEEEEecCCCC-------
Confidence 34566666679999999999999999999999999998 799999999999999999999999999876532
Q ss_pred hhHHHHHHHHHHHHHhcCCceEEEEecccccceEEEEeec-----cceEEEEeecccccccccHHHhHHhcccchhHHHH
Q 013307 85 KVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIH-----QNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMV 159 (445)
Q Consensus 85 ~~~~~~L~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~-----~gi~~DIs~~n~~g~~~s~ll~~~~~~~~~~r~Lv 159 (445)
....++..+.+.+... ..+++.|.+||||||||.+.. +|+.||||+++..|+++|.+|+.|...+|++|+|+
T Consensus 85 -~~~~~~~~~~~~~~~~--~~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~~~g~~~t~ll~~~~~~~~~~r~l~ 161 (349)
T 4fh3_A 85 -QSDTIALQFYEELIAE--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMV 161 (349)
T ss_dssp -CHHHHHHHHHHHHHHT--TEEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESCHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred -ChHHHHHHHHHHHHhh--cccceEeeeeeeeeEEEEecccccccccceeecCcCcchHHHHHHHHHHHhhcCHHHHHHH
Confidence 1223444444444432 356788899999999999863 68999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCcchHHHHHHHHHhhhc-CCCCCCCccccCCCCCCCcccccchhhhhHHHHHhhccccccc
Q 013307 160 LLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTC-VPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFS 238 (445)
Q Consensus 160 ~~iK~Wak~rgL~~~~~G~Lssy~l~lMvi~fLQ~~-~p~ilP~Lq~l~~~~~~~~~~~~~~~~e~~~~e~~~~n~~~~~ 238 (445)
++||+||+.+||++++.||||||+|++|||+|||+. .||++|+++...... .....++.. +...-.
T Consensus 162 ~~iK~wak~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~-~~~~~~~~~------------~f~~~~ 228 (349)
T 4fh3_A 162 LLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQ-EKIVDGFDV------------GFDDKL 228 (349)
T ss_dssp HHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCC-CCEETTEEC------------CCCCCG
T ss_pred HHHHHHHHHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhccccc-cccccCccc------------ccccch
Confidence 999999999999999999999999999999999975 589999987643221 001111110 000001
Q ss_pred ccccccCCCCCHHHHHHHHHHhhc-cCCCCcccceeeccCCceeeecccCCC-------------CCCCCCeEEecCCCC
Q 013307 239 SDKYRKINRSSLAHLFVSFLEKFS-GLSLKASELGICPFTGQWEHIRSNTRW-------------LPNNHPLFIEDPFEQ 304 (445)
Q Consensus 239 ~~~~~~~n~~sl~~LL~~FF~~Ys-~~df~~~~~~Is~~~g~~~~~~~~~~~-------------~~~~~~L~I~DPf~~ 304 (445)
.......|..++|+||.+||+||| .||| ...+||++.++....+..+.| ....+.|+|+|||++
T Consensus 229 ~~~~~~~n~~slg~LL~~FF~~Y~~~Fd~--~~~vIsi~~~~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~ 306 (349)
T 4fh3_A 229 EDIPPSQNYSSLGSLLHGFFRFYAYKFEP--REKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEI 306 (349)
T ss_dssp GGSCCCSCCCCHHHHHHHHHHHHHHTCCT--TTBCBCSSSTTCCCBHHHHTCC---------------CCSSCBBCSSST
T ss_pred hhcccccCcccHHHHHHHHHHHhhhccCC--CCceEEecCCCCccchHHhcccccccccCcccccCCCCceEEEECCCCC
Confidence 111235678899999999999998 3666 567999876542221222222 123568999999999
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHhhccC--CCcchhh
Q 013307 305 PENSARAVSEKNLAKISNAFEMTHFRLTSTN--QTRYALL 342 (445)
Q Consensus 305 ~~Nvar~vs~~~~~~I~~~f~~A~~~L~~~~--~~~~s~L 342 (445)
++|+||+|+..++.+|+.+|++|+++|.+.. .+|.+++
T Consensus 307 ~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~~~~~~~~~lf 346 (349)
T 4fh3_A 307 SHNVGRTVSSSGLYRIRGEFMAASRLLNSRSYPIPYDSLF 346 (349)
T ss_dssp TCBGGGGCCHHHHHHHHHHHHHHHHHHHCCSSSCCGGGGG
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHHHHhCcccCCCHHHHh
Confidence 9999999999999999999999999998754 2455554
No 3
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-55 Score=438.51 Aligned_cols=289 Identities=26% Similarity=0.391 Sum_probs=247.3
Q ss_pred ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCcEEEEecccccCCCCCCCCcceEEeecCCCcccccc
Q 013307 4 YNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAG 83 (445)
Q Consensus 4 ~~~L~~ei~~f~~~~~Pt~ee~~~R~~vi~~l~~il~~~~~~~~~~v~~fGS~~tGl~l~~SDIDl~i~~~~~~~iss~~ 83 (445)
.+.|+.||.+|++++.||++|.+.|+++++.|++++++. +|+++|.+|||+++|+++++||||+++..+...
T Consensus 18 ~~~L~~Ei~~f~~~i~Pt~eE~~~R~~~~~~l~~~~~~~--~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~------ 89 (323)
T 3nyb_A 18 SDWLTFEIKDFVAYISPSREEIEIRNQTISTIREAVKQL--WPDADLHVFGSYSTDLYLPGSDIDCVVTSELGG------ 89 (323)
T ss_dssp HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHTT--CTTCCEEEESTTTTTCCCTTSCEEEEECSSCCG------
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEeCccccCCCCCCCCceEEEecCCCC------
Confidence 467999999999999999999999999999999999997 789999999999999999999999999876532
Q ss_pred hhhHHHHHHHHHHHHHhcCCceEEEEecccccceEEEEeeccceEEEEeecccccccccHHHhHHhcccchhHHHHHHHH
Q 013307 84 KKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVK 163 (445)
Q Consensus 84 k~~~~~~L~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~~DIs~~n~~g~~~s~ll~~~~~~~~~~r~Lv~~iK 163 (445)
.....+|..+++.|++.+.+.+++.|.+||||||||.+..+|+.||||+++..|+.+|.+++.|...+|++|+|+++||
T Consensus 90 -~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~~~g~~~t~li~~~~~~~~~~r~lv~~iK 168 (323)
T 3nyb_A 90 -KESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFERTNGIEAAKLIREWLDDTPGLRELVLIVK 168 (323)
T ss_dssp -GGHHHHHHHHHHHHHHTTSCSSCEEEESSSCEEEEEEETTTTEEEEEESSCSSTTHHHHHHHHHHHSCTTHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHhhCCCceEEEEEeccCCCEEEEEEcCCCceEEEEecCcHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 1234688999999999888889999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCCCCCCcchHHHHHHHHHhhhcCCCCCCCccccCCCCCCCcccccchhhhhHHHHHhhcccccccccccc
Q 013307 164 EWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYR 243 (445)
Q Consensus 164 ~Wak~rgL~~~~~G~Lssy~l~lMvi~fLQ~~~p~ilP~Lq~l~~~~~~~~~~~~~~~~e~~~~e~~~~n~~~~~~~~~~ 243 (445)
+||+++||++++.||||||+|++||++|||++ |+++|+ .
T Consensus 169 ~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~-p~~~~~-------~--------------------------------- 207 (323)
T 3nyb_A 169 QFLHARRLNNVHTGGLGGFSIICLVFSFLHMH-PRIITN-------E--------------------------------- 207 (323)
T ss_dssp HHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTC-HHHHTT-------C---------------------------------
T ss_pred HHHHHcCCCCccCCCcCHHHHHHHHHHHHHhC-CccCcc-------c---------------------------------
Confidence 99999999999999999999999999999997 333321 0
Q ss_pred cCCCCCHHHHHHHHHHhhc-cCCCCcccceeeccCCceeeecccCCCC-----CCCCCeEEecCCCCCCCccccCCHHHH
Q 013307 244 KINRSSLAHLFVSFLEKFS-GLSLKASELGICPFTGQWEHIRSNTRWL-----PNNHPLFIEDPFEQPENSARAVSEKNL 317 (445)
Q Consensus 244 ~~n~~sl~~LL~~FF~~Ys-~~df~~~~~~Is~~~g~~~~~~~~~~~~-----~~~~~L~I~DPf~~~~Nvar~vs~~~~ 317 (445)
..+..++|+||++||+||| .||| .+.+|+++.|+.....+ ..|. ...+.|||+||+++++|+|+++ +++
T Consensus 208 ~~~~~~lg~LL~~Ff~~Y~~~Fd~--~~~~Isv~~g~~~~~~k-~~~~~~~~~~~~~~l~IeDP~~~~~nigr~~--~~~ 282 (323)
T 3nyb_A 208 IDPKDNLGVLLIEFFELYGKNFGY--DDVALGSSDGYPVYFPK-STWSAIQPIKNPFSLAIQDPGDESNNISRGS--FNI 282 (323)
T ss_dssp BCGGGCHHHHHHHHHHHHHHTCCT--TTEEEEESSSCEEEEEG-GGCGGGCSCSCSSSCCBEETTEEEEETTTTC--TTH
T ss_pred CCccccHHHHHHHHHHHhccccCC--CCcEEEEecCCcceeeH-HhcccccccCCCceEEEeCCCCCCcccccch--HHH
Confidence 0124679999999999999 6666 57899999886422222 1242 1356899999999999999984 679
Q ss_pred HHHHHHHHHHHHHhhccC----------CCcchhhhcccc
Q 013307 318 AKISNAFEMTHFRLTSTN----------QTRYALLSSLAR 347 (445)
Q Consensus 318 ~~I~~~f~~A~~~L~~~~----------~~~~s~L~~~~~ 347 (445)
..|+.+|++|+++|++.. ....|+|+.+++
T Consensus 283 ~~I~~~F~~A~~~L~~~~~~~~~~~~~~~~~~s~l~~ii~ 322 (323)
T 3nyb_A 283 RDIKKAFAGAFDLLTNRCFELHSATFKDRLGKSILGNVIK 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCHHHHTTCCSSTTTSC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccCCCCCcchHHhhc
Confidence 999999999999999752 124577777664
No 4
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=8.2e-53 Score=434.10 Aligned_cols=288 Identities=22% Similarity=0.369 Sum_probs=220.7
Q ss_pred ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCcEEEEecccccCCCCCCCCcceEEeecCCCcccc--
Q 013307 4 YNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISS-- 81 (445)
Q Consensus 4 ~~~L~~ei~~f~~~~~Pt~ee~~~R~~vi~~l~~il~~~~~~~~~~v~~fGS~~tGl~l~~SDIDl~i~~~~~~~iss-- 81 (445)
-+.|+.||.+|++++.||++|.+.|..+++.|+++++.. +|+++|.+|||+++|+++++||||+++..+.......
T Consensus 131 a~sl~~EI~~f~~~i~PT~eE~~~R~~vv~~le~ii~~~--fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~~~~~~~~~ 208 (464)
T 3pq1_A 131 AESIDDQLNTLLKEFQLTEENTKLRYLTCSLIEDMAAAY--FPDCIVRPFGSSVNTFGKLGCDLDMFLDLDETRNLSAHK 208 (464)
T ss_dssp SSSHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHTTT--STTCEEEEEGGGTSSCCBTTCCEEEEEECC-----CCSC
T ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEeCCCccCCCCCCCCeEEEEecCCcccccccc
Confidence 467999999999999999999999999999999999987 7999999999999999999999999997664211100
Q ss_pred ---------------cchhhHHHHHHHHHHHHHhc-CCceEEEEecccccceEEEEeeccceEEEEeecccccccccHHH
Q 013307 82 ---------------AGKKVKQSLLGDLLRALRQK-GGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFL 145 (445)
Q Consensus 82 ---------------~~k~~~~~~L~~l~~~L~~~-~~~~~v~~I~~ArVPIIk~~~~~~gi~~DIs~~n~~g~~~s~ll 145 (445)
.++.....+|..+++.|++. .++.+++.|.+||||||||.+..+|+.|||||+|..|+.+|.||
T Consensus 209 ~~g~~~le~~~k~l~seR~~~~~iL~~la~~L~~~~~~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS~nn~~gi~ns~ll 288 (464)
T 3pq1_A 209 ISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCALTTNNRIALTSSELL 288 (464)
T ss_dssp EECC---EECCCCCSCHHHHHHHHHHHHHHHHHHSSTTEEEEEEECSSSSCEEEEEETTTCCEEEEECSCTTHHHHHHHH
T ss_pred cccchhhhhhhccchhhHHHHHHHHHHHHHHHHhcCCCCceeEEecCCCCCEEEEEEcCCCeEEEEecCCCcHHHHHHHH
Confidence 01223457899999999885 47889999999999999999988999999999999999999999
Q ss_pred hHHhcccchhHHHHHHHHHHHHHCCCCCCCCCC-CcchHHHHHHHHHhhhcCCCCCCCccccCCCCCCCcccccchhhhh
Q 013307 146 FWISQIDGRFRDMVLLVKEWAKAHDINNPKTGT-FNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAER 224 (445)
Q Consensus 146 ~~~~~~~~~~r~Lv~~iK~Wak~rgL~~~~~G~-Lssy~l~lMvi~fLQ~~~p~ilP~Lq~l~~~~~~~~~~~~~~~~e~ 224 (445)
+.|.+.||++|+|+++||+||+.+||++++.|| ||||+|++|||+|||++.||+||+||++++..... +.
T Consensus 289 ~~y~~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~---------~~ 359 (464)
T 3pq1_A 289 YIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADAE---------DK 359 (464)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHHHHHHHHHHHSCC-------CCSHHHHTTC-----------
T ss_pred HHHHHhCccHHHHHHHHHHHHHHhCCCccccCCCcCcHHHHHHHHHHHHccCCCcCCChHHhccccCcc---------cc
Confidence 999999999999999999999999999999998 99999999999999999999999999985311000 00
Q ss_pred HHHHHhhccccccccc---ccccCCCCCHHHHHHHHHHhhccCCCCcccceeeccCCceeeecccCCCCCCCCCeEEecC
Q 013307 225 QIAEICAFNIARFSSD---KYRKINRSSLAHLFVSFLEKFSGLSLKASELGICPFTGQWEHIRSNTRWLPNNHPLFIEDP 301 (445)
Q Consensus 225 ~~~e~~~~n~~~~~~~---~~~~~n~~sl~~LL~~FF~~Ys~~df~~~~~~Is~~~g~~~~~~~~~~~~~~~~~L~I~DP 301 (445)
.+.+.++ +.|..+ .....|..++++||.+||+||+.|||+ +.+||+
T Consensus 360 ~~vdg~~---~~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~FDf~--~~vIsI-------------------------- 408 (464)
T 3pq1_A 360 CVIEGNN---CTFVRDLSRIKPSQNTETLELLLKEFFEYFGNFAXX--XXXXXX-------------------------- 408 (464)
T ss_dssp ----------------------CCCCCCHHHHHHHHHHHGGGCCCC--CCCCCC--------------------------
T ss_pred eeecccc---ccccccHhhcCCCCCcCCHHHHHHHHHHHHHhCCCc--cccccc--------------------------
Confidence 0000000 111111 123678899999999999999988885 455654
Q ss_pred CCCCCCccccCCHHHHHHHHHHHHHHHHHhhccCC
Q 013307 302 FEQPENSARAVSEKNLAKISNAFEMTHFRLTSTNQ 336 (445)
Q Consensus 302 f~~~~Nvar~vs~~~~~~I~~~f~~A~~~L~~~~~ 336 (445)
.+|++++|+...+++++.++++|..+|.....
T Consensus 409 ---~~Nvs~nV~~~~~~r~~~~~r~a~~il~~~~~ 440 (464)
T 3pq1_A 409 ---XXXXXXXVSQSQLQKFVDLARESAWILQQEDT 440 (464)
T ss_dssp ---C-------CHHHHHHHHHHHHHHHHHHHCC--
T ss_pred ---ccccccccCHHHHHHHHHHHHHHHHHHhhccc
Confidence 68999999999999999999999999996653
No 5
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=1.6e-53 Score=428.52 Aligned_cols=315 Identities=22% Similarity=0.297 Sum_probs=243.2
Q ss_pred CCcccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCcEEEEecccccCCCCCCCCcceEEeecCCCc-c
Q 013307 1 MGSYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSC-I 79 (445)
Q Consensus 1 ~~~~~~L~~ei~~f~~~~~Pt~ee~~~R~~vi~~l~~il~~~~~~~~~~v~~fGS~~tGl~l~~SDIDl~i~~~~~~~-i 79 (445)
|..-..|+.||.+|++++.||++|.+.|.+++..|++++++. +|++.|.+|||+++|+++|+||||+++..++... .
T Consensus 1 ~~~~~~lt~EI~dFy~~i~PT~eE~~~R~~vv~~l~~ii~~~--~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~~~~~~ 78 (384)
T 3hj4_A 1 MVAKREFIRGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLA--VNKAHVELFGSHVSGFCTPHSDADISLTYRNFSPWL 78 (384)
T ss_dssp -CHHHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHH--STTCEEEEESHHHHSCCCTTCCEEEEEECTTCCGGG
T ss_pred CcchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH--CCCcEEEEeeeccCCCCCCCCCeeEEEecCCCcccc
Confidence 455578999999999999999999999999999999999998 7999999999999999999999999998765321 1
Q ss_pred cccchhhHHHHHHH--HHHHHHhcCCceEEEEecccccceEEEEeeccceEEEEeecccccccccHHHhHHhcc-cchhH
Q 013307 80 SSAGKKVKQSLLGD--LLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQI-DGRFR 156 (445)
Q Consensus 80 ss~~k~~~~~~L~~--l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~~DIs~~n~~g~~~s~ll~~~~~~-~~~~r 156 (445)
....+......++. +.+.+.. ..+..+.+ .+||||||||.+..+|+.||||++|..|+.||.+|+.|.+. ++++|
T Consensus 79 ~~~~~~~~~~~lrll~L~k~~~~-~~ie~V~i-i~ARVPIIKf~d~~tgi~~DIS~nn~~gi~ns~ll~~y~~~~p~rlr 156 (384)
T 3hj4_A 79 QGMERVDEQNNKRMTRFGKEASA-MGMEDVRY-IRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAIRQVFPDFYG 156 (384)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHH-HTCEEEEE-ECSSSCEEEEECTTTCCEEEEEECCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred cccchhhHHHHHHHHHHHhhccc-CCeeEEee-cCcccCEEEEEEcCCCeEEEEEecccchHHHHHHHHHHHhcCcHHHH
Confidence 11111111222221 3333322 35666764 59999999999988999999999999999999999999998 55899
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCcchHHHHHHHHHhhhcCCCCCCCccccCCCCCCCcccccchhhhhHHHHHhhccccc
Q 013307 157 DMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIAR 236 (445)
Q Consensus 157 ~Lv~~iK~Wak~rgL~~~~~G~Lssy~l~lMvi~fLQ~~~p~ilP~Lq~l~~~~~~~~~~~~~~~~e~~~~e~~~~n~~~ 236 (445)
+|+++||+||+.+||++++.||||||+|++|||+|||++ ++||+||++.... +.. ..+..+ ...+...
T Consensus 157 ~LvllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~--~vLP~Lq~~~~~~--~~~---~~~~~~-----~~~~~~~ 224 (384)
T 3hj4_A 157 AYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQEL--GLLPVFSKPTGEF--GEL---TVADAE-----MLLQEFK 224 (384)
T ss_dssp HHHHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHH--TSSCCCCCCCSTT--SCC---CHHHHH-----HHHTTCC
T ss_pred HHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHhcC--CCCCccccccccC--Ccc---cccccH-----hhhhhhc
Confidence 999999999999999999999999999999999999998 8999999965431 100 000000 0011111
Q ss_pred ccc-cccccCCCCCHHHH----HHHHHHhhccCCCCcccceeeccCCceee---------------ecccCCC-------
Q 013307 237 FSS-DKYRKINRSSLAHL----FVSFLEKFSGLSLKASELGICPFTGQWEH---------------IRSNTRW------- 289 (445)
Q Consensus 237 ~~~-~~~~~~n~~sl~~L----L~~FF~~Ys~~df~~~~~~Is~~~g~~~~---------------~~~~~~~------- 289 (445)
... ....+.|..++|+| |++||+||+.|||+ +.+||++..+... -++.++|
T Consensus 225 l~~~~~~~s~N~~sLgeL~~~lL~~Ff~yY~~Fdf~--~~vISi~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 302 (384)
T 3hj4_A 225 LPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFS--AGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAEH 302 (384)
T ss_dssp CCGGGGGCSSCHHHHHHHHHHHHHHHHHHHHHCCTT--TBCBCSSSTTCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCcCcCCCCcccHHHHHHHHHHHHHHHheecCCC--CCEEEecCCcccccccchhhhhhhhhccchhhhhhhhhhhcc
Confidence 111 11235677899999 99999999988885 6789886532210 0001111
Q ss_pred ---------------------CCCCCCeEEecCCCCCCCccccCCHHHHHHHHHHHHHHHHHhhcc
Q 013307 290 ---------------------LPNNHPLFIEDPFEQPENSARAVSEKNLAKISNAFEMTHFRLTST 334 (445)
Q Consensus 290 ---------------------~~~~~~L~I~DPf~~~~Nvar~vs~~~~~~I~~~f~~A~~~L~~~ 334 (445)
.+.++..+||| |+..+|+||.|+...+..|+.||++|+++|...
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (384)
T 3hj4_A 303 KEDGPLDENDFSASMQNETTQRPSNSPYVVED-FVNYVNCGRRVQASRVRHIQQEFNRLREMLIDK 367 (384)
T ss_dssp GGGCSCCHHHHHHHHHHHHHTSCSSSSCCBBC-TTTCCBTTTTSCGGGHHHHHHHHHHHHHHHTTT
T ss_pred ccCCCCCCCccccccCccccccccccceeeee-eccccccceecCccchhHHHHHHHHHHHHHhcc
Confidence 24688999999 999999999999999999999999999999974
No 6
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=1.3e-52 Score=424.50 Aligned_cols=301 Identities=18% Similarity=0.190 Sum_probs=243.3
Q ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCcEEEEecccc-cCCCCCCCCcceEEeecCC----Ccc
Q 013307 5 NVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFV-SNLFSRWGDLDISIELSNG----SCI 79 (445)
Q Consensus 5 ~~L~~ei~~f~~~~~Pt~ee~~~R~~vi~~l~~il~~~~~~~~~~v~~fGS~~-tGl~l~~SDIDl~i~~~~~----~~i 79 (445)
+.|+.+|.++++...++.+|.+.|+++++.|++++++. +|+++|.+|||+. +|+++++||||++|..+.. .+.
T Consensus 26 ~~l~~~l~~~~~~~~~~~~e~~~r~~~~~~l~~~i~~~--~p~~~v~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~ 103 (353)
T 2ikf_A 26 AVVGRSLVNSFKQFVSKDLHTRHVDATYRLVLDCVAAV--DPLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGG 103 (353)
T ss_dssp HHHHHHHHHHTTTTCC-----CCHHHHHHHHHHHHHHH--CTTCEEEEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH--CCCcEEEEecCccccCCCCCCcceeEEEeecccccccccc
Confidence 56899999999999999999999999999999999998 7999999999997 9999999999999976531 100
Q ss_pred ccc---chhhHHHHHHHHHHHHHhcCCceEEEEecccccceEEEEeeccceEEEEeecccccccccHHHhHHhcccchhH
Q 013307 80 SSA---GKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFR 156 (445)
Q Consensus 80 ss~---~k~~~~~~L~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~~DIs~~n~~g~~~s~ll~~~~~~~~~~r 156 (445)
... .+....++|..+++.|++.+.+.+++.|.+||||||||.+ .+|+.|||||+|..|+.++.+++.|...+|++|
T Consensus 104 ~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVPIiK~~~-~~~i~~Dis~~n~~g~~~t~ll~~~~~~~p~~r 182 (353)
T 2ikf_A 104 DAATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRTRVPVVRVKG-GGAVDFDITAYRRNGVRNSALLRAYFEQNPPCR 182 (353)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECSSSSCEEEEEC-SSSCEEEEEESCCHHHHHHHHHHHHHHHSTTHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhcCCCCceEEecccceeEEEEEc-CCCcEEEEEecCccHHHHHHHHHHHHHhCccHH
Confidence 000 0111256889999999988888899999999999999998 589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCC-CCCcchHHHHHHHHHhhhc-CCCCCCCccccCCCCCCCcccccchhhhhHHHHHhhccc
Q 013307 157 DMVLLVKEWAKAHDINNPKT-GTFNSYSLSLLVLFHFQTC-VPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNI 234 (445)
Q Consensus 157 ~Lv~~iK~Wak~rgL~~~~~-G~Lssy~l~lMvi~fLQ~~-~p~ilP~Lq~l~~~~~~~~~~~~~~~~e~~~~e~~~~n~ 234 (445)
+|+++||+||+++||++++. |+||||+|++|||+|||+. .+|++|+++.... ++.+ .
T Consensus 183 ~l~~~iK~wa~~r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~-----~~~~----------------~ 241 (353)
T 2ikf_A 183 WLSMSIKRWSKQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVS-----RVEP----------------L 241 (353)
T ss_dssp HHHHHHHHHHHHTTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGG-----GSCS----------------S
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCcCccccChh-----hccC----------------C
Confidence 99999999999999999999 9999999999999999875 5789998864211 0000 0
Q ss_pred ccccccccccCCCCCHHHHHHHHHHhhc-cCCCCcccceeeccCCceeeecccCCCC------------CCCCCeEEecC
Q 013307 235 ARFSSDKYRKINRSSLAHLFVSFLEKFS-GLSLKASELGICPFTGQWEHIRSNTRWL------------PNNHPLFIEDP 301 (445)
Q Consensus 235 ~~~~~~~~~~~n~~sl~~LL~~FF~~Ys-~~df~~~~~~Is~~~g~~~~~~~~~~~~------------~~~~~L~I~DP 301 (445)
..+.+......|..++++||++||+||+ .||| .+.+||++.|+... +..+.|. +..+.|||+||
T Consensus 242 ~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~fd~--~~~vIsi~~~~~~~-k~~~~w~~~~~~~~~~~~~~~~~~l~IeDP 318 (353)
T 2ikf_A 242 PPHLPLEEPADEGLELGTQVLDFLHFFLHEFDS--DKQVISLNRPGITT-KEELDWTKSAEDFARMNGEKVHYQWCIEDP 318 (353)
T ss_dssp CCCCCCCCCTTTTHHHHHHHHHHHHHHHHTSCT--TTEEECSSSSSCEE-HHHHTCSHHHHTTCEETTEECCCSSEEBCS
T ss_pred CcCCccccCCCCcccHHHHHHHHHHHhccccCc--CceEEEcCCCccee-chhhcccccccccccccCCCCcceEEEECC
Confidence 0111111123467789999999999999 5777 46799998877554 2233453 24578999999
Q ss_pred CCCCCCccccCCHHHHHHHHHHHHHHHHHhh
Q 013307 302 FEQPENSARAVSEKNLAKISNAFEMTHFRLT 332 (445)
Q Consensus 302 f~~~~Nvar~vs~~~~~~I~~~f~~A~~~L~ 332 (445)
|++++|+|++|+..++++|+.+|++|++++.
T Consensus 319 ~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~~ 349 (353)
T 2ikf_A 319 YELNLNVGRNVTPLKRDFLRRHLEKARDTAL 349 (353)
T ss_dssp SSTTCBTTTTCCHHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998764
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=1.4e-50 Score=420.24 Aligned_cols=303 Identities=17% Similarity=0.201 Sum_probs=242.7
Q ss_pred ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCcEEEEeccc-ccCCCCCCCCcceEEeecCCCccccc
Q 013307 4 YNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSF-VSNLFSRWGDLDISIELSNGSCISSA 82 (445)
Q Consensus 4 ~~~L~~ei~~f~~~~~Pt~ee~~~R~~vi~~l~~il~~~~~~~~~~v~~fGS~-~tGl~l~~SDIDl~i~~~~~~~iss~ 82 (445)
++.|+..|.+......+++++.+.|..++..|+.++++. +|+++|++|||+ .+|+++|+||||+++..++ .+..
T Consensus 17 ~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~v~~~--~p~a~v~~FGS~v~~Gl~lp~SDiDl~~~~~~-~~~~-- 91 (468)
T 2b4v_A 17 YAVWGKAIMAENNRRVGPEHMFRTAIRAQQQLQGLADKW--TPDAKVYCCGSMVTYGQMERGSDLDLACMFDD-PYPS-- 91 (468)
T ss_dssp HHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHH--CTTCEEEEETHHHHHSSCBTTCCEEEEEECSS-SSCC--
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH--CCCcEEEEeeCchhcCCCCCCCceeEEEecCC-CCcc--
Confidence 567899999999999999999999999999999999998 799999999999 6999999999999998763 2211
Q ss_pred chhhHHHHHHHHHHHHHhc--C-CceEEEEecccccceEEEE----ee--------------------------------
Q 013307 83 GKKVKQSLLGDLLRALRQK--G-GYRRLQFVAHARVPILKFE----TI-------------------------------- 123 (445)
Q Consensus 83 ~k~~~~~~L~~l~~~L~~~--~-~~~~v~~I~~ArVPIIk~~----~~-------------------------------- 123 (445)
.......+.++++.|++. + .+.+++.|.+||||||||. ++
T Consensus 92 -~~~~~~~~~~l~~~L~~~~~~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~ 170 (468)
T 2b4v_A 92 -HEVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEEDRKARTALLDVRNQCVGDN 170 (468)
T ss_dssp -HHHHHHHHHHHHHHHHTTSCHHHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHHHHHHTEEEEEEESCCCCHH
T ss_pred -chhhHHHHHHHHHHHHHhccccccceeEeccCCCcceEEEEeccccccccccccccccccccccccccccccccccccc
Confidence 111112345688888876 3 2578999999999999997 11
Q ss_pred -----------------------------------------------------------------------ccceEEEEe
Q 013307 124 -----------------------------------------------------------------------HQNISCDIS 132 (445)
Q Consensus 124 -----------------------------------------------------------------------~~gi~~DIs 132 (445)
.+|++||||
T Consensus 171 ~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ld~rf~~~~~gi~~DIS 250 (468)
T 2b4v_A 171 DVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDGKIMTRGMREDYTRDVLDVRFVPEMFMYRWDIS 250 (468)
T ss_dssp HHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCSSSSCGGGGGGEEEEESCTTSCCGGGSSCEEEE
T ss_pred cccchhhhcccccccccccccccccccceeecccccchhhhhcccccccccccccccccccccccccccccccceEEEEe
Confidence 147899999
Q ss_pred ecccccccccHHHhHHhcccch-hHHHHHHHHHHHHHCCCCCCCCCCCcchHHHHHHHHHhhhc------CCCCCCCccc
Q 013307 133 IDNLCGQIKSKFLFWISQIDGR-FRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTC------VPAILPPLKD 205 (445)
Q Consensus 133 ~~n~~g~~~s~ll~~~~~~~~~-~r~Lv~~iK~Wak~rgL~~~~~G~Lssy~l~lMvi~fLQ~~------~p~ilP~Lq~ 205 (445)
|+ ..|+.||.||+.|.+.||+ +|+|+++||+||+.+||++++.|+||||+|++|||+|||+. .|+++|++|.
T Consensus 251 fn-~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fLQ~~~~lP~v~P~vlP~lq~ 329 (468)
T 2b4v_A 251 FV-GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAH 329 (468)
T ss_dssp SC-SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGG
T ss_pred cc-hhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHHhcCcCCCCCcccccchhh
Confidence 98 8999999999999999999 99999999999999999999999999999999999999986 3778888887
Q ss_pred cCCCCCCCcccccchhhhhHHHHHhhcccccccccccccCCCCCHHHHHHHHHHhhc-cCCCCcccceeeccCCceeeec
Q 013307 206 IYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKFS-GLSLKASELGICPFTGQWEHIR 284 (445)
Q Consensus 206 l~~~~~~~~~~~~~~~~e~~~~e~~~~n~~~~~~~~~~~~n~~sl~~LL~~FF~~Ys-~~df~~~~~~Is~~~g~~~~~~ 284 (445)
+.... + |. ++...|..++|+||++||+||| .||| .+.+||++.|+...+
T Consensus 330 l~~~~---~----------------------~~--p~~~~n~~sLg~LL~~FF~yYg~~Fd~--~~~vISir~g~~~~K- 379 (468)
T 2b4v_A 330 LPRYP---D----------------------FS--PLYDCDPTELGRLLHGFFIFYAHHFDY--EREVVSLNRNRRSYR- 379 (468)
T ss_dssp SCSSC---C----------------------CC--CCCCCCHHHHHHHHHHHHHHHHHSSCT--TTEEBCSSSSSCEEH-
T ss_pred ccccc---C----------------------CC--cccccCccCHHHHHHHHHHHHccccCC--CCcEEEecCCcceec-
Confidence 64211 0 00 0113456789999999999999 5665 578999998876543
Q ss_pred ccCCCCC-------CCCCeEEecCCCC----CCCccccCCHHHHHHHHHHHHHHHHHhhccCC---Ccchhhh
Q 013307 285 SNTRWLP-------NNHPLFIEDPFEQ----PENSARAVSEKNLAKISNAFEMTHFRLTSTNQ---TRYALLS 343 (445)
Q Consensus 285 ~~~~~~~-------~~~~L~I~DPf~~----~~Nvar~vs~~~~~~I~~~f~~A~~~L~~~~~---~~~s~L~ 343 (445)
..+.|.. ..++|||+|||++ ++|+|++++..++..|+.+|++|+++|..... ...|+|+
T Consensus 380 ~~~~w~~~~n~~~~~~~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~~~~~p~~siLg 452 (468)
T 2b4v_A 380 SDIGWNFPQNKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFLPTNAPEKSILG 452 (468)
T ss_dssp HHHTCCCGGGEETTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCCTTTCSCCGGGC
T ss_pred ccccccccccccCCCcceEEEECCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCCCCeee
Confidence 3334532 2357999999999 99999999999999999999999999986542 2346665
No 8
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=2.2e-44 Score=377.14 Aligned_cols=273 Identities=20% Similarity=0.247 Sum_probs=224.8
Q ss_pred chHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHhhh--------------cCCCcEEEEecccccCCCCCCCCcce
Q 013307 6 VLEPILKDILGM--LNPLREDWETRMKVISDLREVVESVE--------------SLRGATVEPFGSFVSNLFSRWGDLDI 69 (445)
Q Consensus 6 ~L~~ei~~f~~~--~~Pt~ee~~~R~~vi~~l~~il~~~~--------------~~~~~~v~~fGS~~tGl~l~~SDIDl 69 (445)
.++.+|.++++. +.||+||.+.|+++++.|++++++.. ..++++|.+|||+++|+++|+||||+
T Consensus 37 ~~t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~~~~~~~~~~~~~v~~FGS~~lG~~~p~SDID~ 116 (514)
T 1q79_A 37 LLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDA 116 (514)
T ss_dssp HHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCBCEEEEEHHHHHTCCCTTCCEEE
T ss_pred HhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhcccCCceEEEeeeeccCCCCCCCceeE
Confidence 355667777665 88999999999999999999998521 13579999999999999999999999
Q ss_pred EEeecCCCcccccchhhHHHHHHHHHHHHHhcCCceEEEEecccccceEEEEeeccceEEEEeecccc------------
Q 013307 70 SIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLC------------ 137 (445)
Q Consensus 70 ~i~~~~~~~iss~~k~~~~~~L~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~~DIs~~n~~------------ 137 (445)
+|+.+... .+.+++..+.+.|++...+.+++.|.+|+||||||+. +|+.|||+|++..
T Consensus 117 ~~v~p~~~--------~~~dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~--~gi~vDL~f~~~~~~~~p~~l~l~~ 186 (514)
T 1q79_A 117 LCVAPRHV--------DRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCF--DGIEIDILFARLALQTIPEDLDLRD 186 (514)
T ss_dssp EEEECTTS--------CHHHHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEE--TTEEEEEEEEECSCSSBCTTCCTTC
T ss_pred EEecCCcC--------CHHHHHHHHHHHHhcCccCceEEEecCCcccEEEEEE--CCeeEEEEEecCCcccCcccccCCc
Confidence 99887531 1246788899999988889999999999999999997 7999999998732
Q ss_pred ----------------cccccHHHhHHhcccchhHHHHHHHHHHHHHCCCCCCCCCCCcchHHHHHHHHHhhhcCCCCCC
Q 013307 138 ----------------GQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILP 201 (445)
Q Consensus 138 ----------------g~~~s~ll~~~~~~~~~~r~Lv~~iK~Wak~rgL~~~~~G~Lssy~l~lMvi~fLQ~~~p~ilP 201 (445)
|++.+++|..+...+++||.++++||+||++||||+++.||||||+|++||+++||.+
T Consensus 187 ~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lLVa~~~Ql~------ 260 (514)
T 1q79_A 187 DSLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLY------ 260 (514)
T ss_dssp GGGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHHHS------
T ss_pred hhhhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCCccHHHHHHHHHHHHHhC------
Confidence 4445566666666678999999999999999999999999999999999999999986
Q ss_pred CccccCCCCCCCcccccchhhhhHHHHHhhcccccccccccccCCCCCHHHHHHHHHHhhccCCCCcccceee-ccCCce
Q 013307 202 PLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKFSGLSLKASELGIC-PFTGQW 280 (445)
Q Consensus 202 ~Lq~l~~~~~~~~~~~~~~~~e~~~~e~~~~n~~~~~~~~~~~~n~~sl~~LL~~FF~~Ys~~df~~~~~~Is-~~~g~~ 280 (445)
| ..++++||..||+||+.|||.. .+.++ +..|..
T Consensus 261 ------P--------------------------------------~~s~~~LL~~FF~~y~~~dw~~-pV~l~~~~~~~l 295 (514)
T 1q79_A 261 ------P--------------------------------------NAIASTLVHKFFLVFSKWEWPN-PVLLKQPEECNL 295 (514)
T ss_dssp ------T--------------------------------------TCCHHHHHHHHHHHHHSCCTTS-CBCSSCCCCCSS
T ss_pred ------C--------------------------------------CCCHHHHHHHHHHHHhcCCCCC-CeEecccCCCCC
Confidence 1 1368999999999999999974 33332 333321
Q ss_pred eeecccCCCCCC------CCCeEEecCCCCCCCccccCCHHHHHHHHHHHHHHHHHhhc---cCCCcchhhh
Q 013307 281 EHIRSNTRWLPN------NHPLFIEDPFEQPENSARAVSEKNLAKISNAFEMTHFRLTS---TNQTRYALLS 343 (445)
Q Consensus 281 ~~~~~~~~~~~~------~~~L~I~DPf~~~~Nvar~vs~~~~~~I~~~f~~A~~~L~~---~~~~~~s~L~ 343 (445)
..+.|.++ .+.|+|+||++|.+|+|++|+..++..|++||++|+++|.. ...+|..++.
T Consensus 296 ----~~~~w~p~~~~~dr~~~m~IidP~~P~~N~~~nVs~st~~~I~~Ef~rA~~il~~i~~~~~~w~~Lf~ 363 (514)
T 1q79_A 296 ----NLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFE 363 (514)
T ss_dssp ----CCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTC
T ss_pred ----CCcccCCccCCcCcccceeEeCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhC
Confidence 12235443 35799999999999999999999999999999999999997 4446776663
No 9
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=1.2e-43 Score=372.96 Aligned_cols=273 Identities=18% Similarity=0.224 Sum_probs=226.9
Q ss_pred chHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHhhhc-------C-------CCcEEEEecccccCCCCCCCCcce
Q 013307 6 VLEPILKDILGM--LNPLREDWETRMKVISDLREVVESVES-------L-------RGATVEPFGSFVSNLFSRWGDLDI 69 (445)
Q Consensus 6 ~L~~ei~~f~~~--~~Pt~ee~~~R~~vi~~l~~il~~~~~-------~-------~~~~v~~fGS~~tGl~l~~SDIDl 69 (445)
.++.+|.++++. +.||+||.+.|+++++.|++++++... . .+++|.+|||+++|+++|+||||+
T Consensus 24 ~~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~~~~~V~~FGSy~lG~~~p~SDID~ 103 (530)
T 2hhp_A 24 KLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDT 103 (530)
T ss_dssp HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCEEEEEHHHHHTCCCTTCCEEE
T ss_pred hhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhccccCceEEEecccccCCCCCCCceeE
Confidence 456777777776 889999999999999999999986310 1 269999999999999999999999
Q ss_pred EEeecCCCcccccchhhHHHHHHHHHHHHHhcCCceEEEEecccccceEEEEeeccceEEEEeeccc-------------
Q 013307 70 SIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNL------------- 136 (445)
Q Consensus 70 ~i~~~~~~~iss~~k~~~~~~L~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~~DIs~~n~------------- 136 (445)
+|+.+... ....++..+++.|++.+.+.+++.|.+|+||||||+. +|+.|||+|++.
T Consensus 104 ~v~~p~~~--------~~~dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~--~gi~vDL~f~~~~~~~ip~~l~l~~ 173 (530)
T 2hhp_A 104 LVVVPKHV--------TREDFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKF--SGISIDLICARLDQPQVPLSLTLSD 173 (530)
T ss_dssp EEEECTTC--------CHHHHHHHHHHHHHTCTTEEEEEEETTSSSCEEEEEE--TTEEEEEEEEECSSSCBCTTCCSCC
T ss_pred EEecCCcC--------CHHHHHHHHHHHHhcCCCCceEEEecCCcccEEEEEE--CCEeeEEEEeccccccCCcccCCCc
Confidence 99887532 1246888999999988889999999999999999997 899999999764
Q ss_pred ---------------ccccccHHHhHHhcccchhHHHHHHHHHHHHHCCCCCCCCCCCcchHHHHHHHHHhhhcCCCCCC
Q 013307 137 ---------------CGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILP 201 (445)
Q Consensus 137 ---------------~g~~~s~ll~~~~~~~~~~r~Lv~~iK~Wak~rgL~~~~~G~Lssy~l~lMvi~fLQ~~~p~ilP 201 (445)
+|++.+++|..+...+++||.++++||+||++|||++++.||||||+|++||+++||.+
T Consensus 174 ~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~~lQl~------ 247 (530)
T 2hhp_A 174 KNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLY------ 247 (530)
T ss_dssp GGGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHS------
T ss_pred hhhhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHHHHhcC------
Confidence 35566777777777778999999999999999999999999999999999999999986
Q ss_pred CccccCCCCCCCcccccchhhhhHHHHHhhcccccccccccccCCCCCHHHHHHHHHHhhccCCCCcccceeecc-CCce
Q 013307 202 PLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKFSGLSLKASELGICPF-TGQW 280 (445)
Q Consensus 202 ~Lq~l~~~~~~~~~~~~~~~~e~~~~e~~~~n~~~~~~~~~~~~n~~sl~~LL~~FF~~Ys~~df~~~~~~Is~~-~g~~ 280 (445)
| ..++++||..||+||+.|||.. .+.+++. .|..
T Consensus 248 ------P--------------------------------------~~s~~~LL~~FF~~y~~~dw~~-pV~l~~~~~g~~ 282 (530)
T 2hhp_A 248 ------P--------------------------------------NACSAVILNRFFIILSEWNWPQ-PVILKPIEDGPL 282 (530)
T ss_dssp ------T--------------------------------------TCCHHHHHHHHHHHHHHCCTTS-CEESSCCCCCSS
T ss_pred ------C--------------------------------------CCCHHHHHHHHHHHHhcCCCCC-ceEecccCCCCc
Confidence 1 2367999999999999999973 3334432 2321
Q ss_pred eeecccCCCCCC------CCCeEEecCCCCCCCccccCCHHHHHHHHHHHHHHHHHhhc---cCCCcchhhh
Q 013307 281 EHIRSNTRWLPN------NHPLFIEDPFEQPENSARAVSEKNLAKISNAFEMTHFRLTS---TNQTRYALLS 343 (445)
Q Consensus 281 ~~~~~~~~~~~~------~~~L~I~DPf~~~~Nvar~vs~~~~~~I~~~f~~A~~~L~~---~~~~~~s~L~ 343 (445)
..+.|.++ .+.|+|+||+++.+|+|++|+..++..|++||++|+++|.. ...+|..+|.
T Consensus 283 ----~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~~I~~Ef~rA~~ll~~i~~~~~~w~~Lf~ 350 (530)
T 2hhp_A 283 ----QVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFE 350 (530)
T ss_dssp ----CSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTC
T ss_pred ----cccccCcccCCCCCccceeEECCCCCCCccCccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHcC
Confidence 11245443 47899999999999999999999999999999999999997 3446776653
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=99.67 E-value=6.8e-15 Score=150.30 Aligned_cols=232 Identities=19% Similarity=0.201 Sum_probs=160.4
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCcEEEEecccccCCCCCC-CCcceEEeecCCCcccccchh
Q 013307 7 LEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRW-GDLDISIELSNGSCISSAGKK 85 (445)
Q Consensus 7 L~~ei~~f~~~~~Pt~ee~~~R~~vi~~l~~il~~~~~~~~~~v~~fGS~~tGl~l~~-SDIDl~i~~~~~~~iss~~k~ 85 (445)
+++-+.+|++.+.|+++|.+.-..+.+.|.+.|++. ++++...||++-|+|+++ |||||.+.++... .+.
T Consensus 3 ~~~~~~~~l~~i~P~~~E~~~~~~~~~~I~~~L~~~----~~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~~~-----~~e 73 (437)
T 1r89_A 3 VEEILEKALELVIPDEEEVRKGREAEEELRRRLDEL----GVEYVFVGSYARNTWLKGSLEIDVFLLFPEEF-----SKE 73 (437)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHH----TCCEEEEHHHHHTCCCTTCCEEEEEEEECTTS-----CHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHhC----CCeEEEeccccCCCcCCCCCCceEEEEcCCCC-----CHH
Confidence 567788999999999999999999999999999872 369999999999999997 7999999987532 111
Q ss_pred hHH-HHHHHHHHHHHhcCCceEEEEecccccceEEEEeeccceEEEE--eecccc------cccccHHHhHHhcccc-hh
Q 013307 86 VKQ-SLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDI--SIDNLC------GQIKSKFLFWISQIDG-RF 155 (445)
Q Consensus 86 ~~~-~~L~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~~DI--s~~n~~------g~~~s~ll~~~~~~~~-~~ 155 (445)
... ..+..+.+.+++ + . +..|..|-++... .|+++|| ++.-.. ++..|.+...|..... .+
T Consensus 74 ~l~~~~l~~~~e~l~~---~-~---~~ya~hpyV~~~f--~g~~vDVVP~y~v~~g~~~~tavDrtp~H~~fv~~r~~~~ 144 (437)
T 1r89_A 74 ELRERGLEIGKAVLDS---Y-E---IRYAEHPYVHGVV--KGVEVDVVPCYKLKEPKNIKSAVDRTPFHHKWLEGRIKGK 144 (437)
T ss_dssp HHHHHHHHHHHHHSSS---E-E---EEESSSEEEEEEE--TTEEEEEEEEECCSSSSCCCSHHHHHHHHHHHHTTTSTTC
T ss_pred HHHHHHHHHHHHHHHH---h-h---hhccCCceEEEEe--cceEEEEEEEEEccCCccccccccCcHHHHHHHHhhhhhh
Confidence 111 123333333321 2 2 2356788887765 6999998 333322 2223456666664322 28
Q ss_pred HHHHHHHHHHHHHCCCCCC--CCCCCcchHHHHHHHHHhhhcCCCCCCCccccCCCCCCCcccccchhhhhHHHHHhhcc
Q 013307 156 RDMVLLVKEWAKAHDINNP--KTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFN 233 (445)
Q Consensus 156 r~Lv~~iK~Wak~rgL~~~--~~G~Lssy~l~lMvi~fLQ~~~p~ilP~Lq~l~~~~~~~~~~~~~~~~e~~~~e~~~~n 233 (445)
+.+++++|+|.+..|++++ +.+|++||++-||+++| .
T Consensus 145 ~~~VRLLK~f~k~~~~ygse~k~~gfSsYllELLv~~y---G-------------------------------------- 183 (437)
T 1r89_A 145 ENEVRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVFY---G-------------------------------------- 183 (437)
T ss_dssp HHHHHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHHH---S--------------------------------------
T ss_pred hhHHHHHHHHHHhCCcCCCcccCCCCCHHHHHHHHHHH---c--------------------------------------
Confidence 8999999999999999876 56899999999999972 1
Q ss_pred cccccccccccCCCCCHHHHHHHHHHhhccCCCCcccceeeccCCceeeecccCCCCCCCCCeEEecCCCCCCCccccCC
Q 013307 234 IARFSSDKYRKINRSSLAHLFVSFLEKFSGLSLKASELGICPFTGQWEHIRSNTRWLPNNHPLFIEDPFEQPENSARAVS 313 (445)
Q Consensus 234 ~~~~~~~~~~~~n~~sl~~LL~~FF~~Ys~~df~~~~~~Is~~~g~~~~~~~~~~~~~~~~~L~I~DPf~~~~Nvar~vs 313 (445)
+...+|..+. +|.. ...|+...+.. ....+|+|.||-|+++|||++++
T Consensus 184 ---------------~f~~vl~~~~------~w~~-~~~Id~~~~~~----------~~~~PlvViDPvDp~rNVAa~~s 231 (437)
T 1r89_A 184 ---------------SFLETVKNAR------RWTR-RTVIDVAKGEV----------RKGEEFFVVDPVDEKRNVAANLS 231 (437)
T ss_dssp ---------------SHHHHHHHHT------TCCT-TEEEEGGGTEE----------EECSSCEEEETTEEEEETTTTCC
T ss_pred ---------------CHHHHHHHHH------HhCC-CeEEecCCCcc----------cCCCCEEEECCCCCCCchhhcCC
Confidence 1122222222 2321 22343321111 12468999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 013307 314 EKNLAKISNAFEMTHF 329 (445)
Q Consensus 314 ~~~~~~I~~~f~~A~~ 329 (445)
..++..+..+.+...+
T Consensus 232 ~~~~~~~~~~a~~~l~ 247 (437)
T 1r89_A 232 LDNLARFVHLCREFME 247 (437)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9888888877765543
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.46 E-value=5.3e-12 Score=126.99 Aligned_cols=266 Identities=15% Similarity=0.172 Sum_probs=151.0
Q ss_pred HHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhh-hcC----CC-cEEEEecccccCCCCCC-CCcceEEeecCCCcccc
Q 013307 10 ILKDIL-GMLNPLREDWETRMKVISDLREVVESV-ESL----RG-ATVEPFGSFVSNLFSRW-GDLDISIELSNGSCISS 81 (445)
Q Consensus 10 ei~~f~-~~~~Pt~ee~~~R~~vi~~l~~il~~~-~~~----~~-~~v~~fGS~~tGl~l~~-SDIDl~i~~~~~~~iss 81 (445)
.+..|+ ..+.|+.++.+.-...++.|...|++. +.. .. .++..+||++.|+++++ |||||++.++......
T Consensus 10 ~l~~fi~~~l~p~~~~~~~i~~~~~~I~~~L~~~~~~~~~~~~~v~~v~~~GSyargT~lrg~sDiDlvV~l~~~~~~~- 88 (349)
T 1px5_A 10 DLDKFIEDHLLPNTXFRTQVKEAIDIVXRFLKERCFQGTADPVRVSKVVKGGSSGKGTTLRGRSDADLVVFLTKLTSFE- 88 (349)
T ss_dssp GHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEEEEEC--------CEEEEEEEEEESCSCTT-
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhhcccccCCcceEEEEEecCcCCCcccCCCCceeEEEEECCCCchh-
Confidence 456666 788999999998889999999999874 111 11 36778899999999996 7999999887532110
Q ss_pred cchhhHHHHHHHHHHHHHhc---CCce-EEEEec-ccccc-eEEEEee----ccceEEEEe--ecccc------------
Q 013307 82 AGKKVKQSLLGDLLRALRQK---GGYR-RLQFVA-HARVP-ILKFETI----HQNISCDIS--IDNLC------------ 137 (445)
Q Consensus 82 ~~k~~~~~~L~~l~~~L~~~---~~~~-~v~~I~-~ArVP-IIk~~~~----~~gi~~DIs--~~n~~------------ 137 (445)
........++..+.+.|.+. ..+. ..++.. .-+.| -+.+... ..++++||. +.+..
T Consensus 89 ~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvPa~~~l~~~~~~~~~~~~~ 168 (349)
T 1px5_A 89 DQLRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEI 168 (349)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEETTTTEEEEEEEEEEECSSCSCCTTSCCCHHH
T ss_pred hHHhhHHHHHHHHHHHHHHhhhhhccccceeEecccccCCceEEEEEEccCcCCceEEEEEEehhhhcccccccCCChHH
Confidence 01122346777777777652 2222 333321 11345 2444432 257999973 33211
Q ss_pred ---ccc--------------ccHHHhHHh-cccchhHHHHHHHHHHHHHCCCCCCCCCCCcchHHHHHHHHHhhhcCCCC
Q 013307 138 ---GQI--------------KSKFLFWIS-QIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAI 199 (445)
Q Consensus 138 ---g~~--------------~s~ll~~~~-~~~~~~r~Lv~~iK~Wak~rgL~~~~~G~Lssy~l~lMvi~fLQ~~~p~i 199 (445)
.+. .+.+...|. .....++.+++++|+|.+..+.. ...++++||+|.+|+++.......
T Consensus 169 y~~li~~~~~~~~~g~~~~~~~~~h~~~v~~~~~~~k~lIRLlK~W~~~~~~~-~~~~~~ssy~lELL~~~a~e~~~~-- 245 (349)
T 1px5_A 169 YVQLIKECKSRGKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKT-HGNKLPPQYALELLTVYAWEQGSR-- 245 (349)
T ss_dssp HHHHHHHHHHHTCTTTTGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHTT-CSSCCCCHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHhhccccccCccchhcCHHHHHHHHHhCcHHHHHHHHHHHHHHHHhhhc-ccCCCCChHHHHHHHHHHHHhCCC--
Confidence 000 022222333 23347899999999999888642 335789999999999987776410
Q ss_pred CCCccccCCCCCCCcccccchhhhhHHHHHhhcccccccccccccCCCCCHHHHHHHHHHhhccCCCCcccceeeccCCc
Q 013307 200 LPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKFSGLSLKASELGICPFTGQ 279 (445)
Q Consensus 200 lP~Lq~l~~~~~~~~~~~~~~~~e~~~~e~~~~n~~~~~~~~~~~~n~~sl~~LL~~FF~~Ys~~df~~~~~~Is~~~g~ 279 (445)
....++.+-|..+|++-++ |. . +++.-..
T Consensus 246 ---------------------------------------------~~~~~~~~~f~~vle~l~~--~~--~--~~i~w~~ 274 (349)
T 1px5_A 246 ---------------------------------------------KTDFSTAQGFQTVLELVLK--HQ--K--LCIFWEA 274 (349)
T ss_dssp ---------------------------------------------CSSCCHHHHHHHHHHHHHT--GG--G--CEECCCS
T ss_pred ---------------------------------------------ccCCCHHHHHHHHHHHHHh--CC--c--cceeeec
Confidence 0123567888888888764 32 1 1221111
Q ss_pred eeeecc-cC-CCC---CCCCCeEEecCCCCCCCccccCCHHHHHHHHHHHHHHHHHhhcc
Q 013307 280 WEHIRS-NT-RWL---PNNHPLFIEDPFEQPENSARAVSEKNLAKISNAFEMTHFRLTST 334 (445)
Q Consensus 280 ~~~~~~-~~-~~~---~~~~~L~I~DPf~~~~Nvar~vs~~~~~~I~~~f~~A~~~L~~~ 334 (445)
...... .. ... -...+..|.||.+|++|||.+ +...+..+. ..|...|..+
T Consensus 275 ~y~~~~~~~~~fl~~~l~~~~p~I~DP~dp~~NVa~~-~~~~~~~~~---~~A~~~l~~~ 330 (349)
T 1px5_A 275 YYDFTNPVVGRCMLQQLKKPRPVILDPADPTGNVGGG-DTHSWQRLA---QEARVWLGYP 330 (349)
T ss_dssp SCCSSSHHHHHHHHHHHTSSSCEEBCTTCTTCBTTCS-CHHHHHHHH---HHHHHHTTSG
T ss_pred cccccchhHHhhhhhhhcCCCCeeeCCCCCCCcccCC-chhhHHHHH---HHHHHHHhch
Confidence 000000 00 000 012346899999999999987 777777766 4444555544
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=98.59 E-value=1.3e-05 Score=79.15 Aligned_cols=246 Identities=12% Similarity=0.128 Sum_probs=163.4
Q ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCC------cEEEEecccccCCCCCCC-CcceEEeecCCC
Q 013307 5 NVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRG------ATVEPFGSFVSNLFSRWG-DLDISIELSNGS 77 (445)
Q Consensus 5 ~~L~~ei~~f~~~~~Pt~ee~~~R~~vi~~l~~il~~~~~~~~------~~v~~fGS~~tGl~l~~S-DIDl~i~~~~~~ 77 (445)
..+.+.|.+=-..+.||++|+..-..+++.|.+++..+.-.|+ ..|..+||++.|+++.+. |+|++|++..-+
T Consensus 25 ~~~~~~llkr~~~l~Ps~eEq~~v~~lv~kI~~~ld~liv~pg~~e~~L~~V~rVGs~aKgtll~G~~~~dlVvl~k~lP 104 (364)
T 4at7_A 25 TSFSEALLKRNQDLAPNSAEQASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILP 104 (364)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCEEEEEEEHHHHHTCCCTTCCEEEEEEEESSCC
T ss_pred HHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHhhhcCCCccccccceeEEeccccCCceecCCCceeEEEEecCCC
Confidence 4577888888889999999999999999999999987643333 378899999999999998 999999876522
Q ss_pred cccccchhhHHHHHHHHHHHHHhcCCceEEEEe-cccccceEEEEeeccceEEEEe--------------------eccc
Q 013307 78 CISSAGKKVKQSLLGDLLRALRQKGGYRRLQFV-AHARVPILKFETIHQNISCDIS--------------------IDNL 136 (445)
Q Consensus 78 ~iss~~k~~~~~~L~~l~~~L~~~~~~~~v~~I-~~ArVPIIk~~~~~~gi~~DIs--------------------~~n~ 136 (445)
.+.-...++.++.+.|+....-..+.+. ..+.+ .|+- ....+.|=|+ ....
T Consensus 105 -----T~e~v~~L~~kV~e~L~~q~~~e~~~~~~~e~~~-~I~~--~~~~v~i~It~tsp~lrk~dp~~~Ld~~~cl~aL 176 (364)
T 4at7_A 105 -----TLEAVAALGNKVVESLRAQDPSEVLTMLTNETGF-EISS--SDATVKILITTVPPNLRKLDPELHLDIKVLQSAL 176 (364)
T ss_dssp -----BHHHHHHHHHHHHHHHHHHCTTSCCEEEEETTEE-EEEC--SSCEEEEEEEECHHHHHTCCTTTBCCHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHhhhhccccceeeccCcceE-EEec--CCCcEEEEEEeCChhhccCChhHhcCHHHHHHHH
Confidence 1222334667888888765321111111 11111 1110 0112222222 2223
Q ss_pred ccccccHHHhHHhcccchhHHHHHHHHHHHHHCCCCCCCCCCCcchHHHHHHHHHhhhcCCCCCCCccccCCCCCCCccc
Q 013307 137 CGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLK 216 (445)
Q Consensus 137 ~g~~~s~ll~~~~~~~~~~r~Lv~~iK~Wak~rgL~~~~~G~Lssy~l~lMvi~fLQ~~~p~ilP~Lq~l~~~~~~~~~~ 216 (445)
.+++.+++.+.-+. +..++.+++++|...+... ..+.|+.|++.+|+.+-+-...
T Consensus 177 aalRhAkWfq~na~-~s~v~~lIRIlkDlc~R~~----~w~pL~~waLELL~~~Ai~s~~-------------------- 231 (364)
T 4at7_A 177 AAIRHARWFEENAS-QSTVKVLIRLLKDLRIRFP----GFEPLTPWILDLLGHYAVMNNP-------------------- 231 (364)
T ss_dssp HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCG----GGTTCCHHHHHHHHHHHHHSST--------------------
T ss_pred HHhhhhHHHHhhcc-ccccceeehhhHHHHHhcC----CcCCCCHHHHHHHHHHHHhcCC--------------------
Confidence 34555555554332 3567889999999655542 3468999999999997665530
Q ss_pred ccchhhhhHHHHHhhcccccccccccccCCCCCHHHHHHHHHHhhccCCCCcccceeeccCCceeeecccCCCCCCCCCe
Q 013307 217 GVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKFSGLSLKASELGICPFTGQWEHIRSNTRWLPNNHPL 296 (445)
Q Consensus 217 ~~~~~~e~~~~e~~~~n~~~~~~~~~~~~n~~sl~~LL~~FF~~Ys~~df~~~~~~Is~~~g~~~~~~~~~~~~~~~~~L 296 (445)
.....++++.|..+|+.-+. .+-. .| .-
T Consensus 232 ---------------------------~~~~l~~~~afRRVLElLAs-Gill--------p~----------------~~ 259 (364)
T 4at7_A 232 ---------------------------TRQPLALNVAYRRCLQILAA-GLFL--------PG----------------SV 259 (364)
T ss_dssp ---------------------------TSSCCCHHHHHHHHHHHHHT-TTTS--------TT----------------BC
T ss_pred ---------------------------CCCCcCHHHHHHHHHHHHHh-Cccc--------CC----------------CC
Confidence 01145789999999999874 1110 01 12
Q ss_pred EEecCCCC-CCCccccCCHHHHHHHHHHHHHHHHHhhccC
Q 013307 297 FIEDPFEQ-PENSARAVSEKNLAKISNAFEMTHFRLTSTN 335 (445)
Q Consensus 297 ~I~DPf~~-~~Nvar~vs~~~~~~I~~~f~~A~~~L~~~~ 335 (445)
-|.||.+. +.|+...++....+.|...-..+.+++.-..
T Consensus 260 Gi~DPCE~~~~~v~~~lt~qq~e~it~sAQ~~LRllafgq 299 (364)
T 4at7_A 260 GITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGG 299 (364)
T ss_dssp CCBCTTSSSCCBGGGGSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcCCCCCCCcchhccCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 36789988 5778888888888999999999999998653
No 13
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=97.69 E-value=0.00019 Score=59.90 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhhcCCCcEEEEecccccCCCCCCCCcceEEeecC
Q 013307 32 ISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSN 75 (445)
Q Consensus 32 i~~l~~il~~~~~~~~~~v~~fGS~~tGl~l~~SDIDl~i~~~~ 75 (445)
++.+.+++++. .+...+..|||++.|-+.++||||++|..+.
T Consensus 14 ~~~i~~~l~~~--~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 55 (114)
T 1no5_A 14 LAIVKTILQQL--VPDYTVWAFGSRVKGKAKKYSDLDLAIISEE 55 (114)
T ss_dssp HHHHHHHHHHH--CTTSEEEEEGGGTTTCCCTTCCEEEEEECSS
T ss_pred HHHHHHHHHHh--CCCCEEEEEeccCCCCCCCCCCeEEEEEeCC
Confidence 45566666664 3457999999999999999999999997764
No 14
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=97.46 E-value=0.015 Score=57.99 Aligned_cols=238 Identities=14% Similarity=0.124 Sum_probs=146.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHhhhc------C---C--------------------------C----cEEEEec
Q 013307 14 ILGMLNPLREDWETRMKVISDLREVVESVES------L---R--------------------------G----ATVEPFG 54 (445)
Q Consensus 14 f~~~~~Pt~ee~~~R~~vi~~l~~il~~~~~------~---~--------------------------~----~~v~~fG 54 (445)
=...+.|++||++.-+.++..++..++.+.. . . . .-|.-+|
T Consensus 19 KH~~IyP~~eel~avq~~Vs~~EraLK~VSD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~L~GVMRVG 98 (383)
T 4at7_B 19 KHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPDDESKEGAGEQKAEHMTRTLRGVMRVG 98 (383)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEEECH
T ss_pred hhcccCCCHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCccccccccccCCccccccccccccccCCccceeeeeeEec
Confidence 3467889999999999999999999875421 0 0 0 1244589
Q ss_pred ccccCCCCCCC-CcceEEeecCCCcccccchhhHHHHHHHHHHHHHhc-----CCceEEEE-ecccccceEEEEeeccce
Q 013307 55 SFVSNLFSRWG-DLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQK-----GGYRRLQF-VAHARVPILKFETIHQNI 127 (445)
Q Consensus 55 S~~tGl~l~~S-DIDl~i~~~~~~~iss~~k~~~~~~L~~l~~~L~~~-----~~~~~v~~-I~~ArVPIIk~~~~~~gi 127 (445)
+++-|+.+.+- ++|+++++..- ....+|..+++.|-.. ..-..+.. ...|.+ +|+ ......+
T Consensus 99 ~laKGlLLkGd~~veLVvlck~k---------PT~~ll~~va~~L~~qL~~~t~~~y~v~~~~~ea~i-~i~-~~~~p~~ 167 (383)
T 4at7_B 99 LVAKGLLLKGDLDLELVLLCKEK---------PTTALLDKVADNLAIQLTTVTEDKYEILQSVDDAAI-VIK-NTKEPPL 167 (383)
T ss_dssp HHHHTCCCTTCCEEEEEEEESSC---------CBHHHHHHHHHHHHHHHTTTCCCCCEEEEEGGGTEE-EEE-CSSSSCC
T ss_pred eecccceECCCCceeEEEEeCCC---------CcHHHHHHHHHHHHHHHhhccCCceEEeecCCcceE-EEe-cCCCCCe
Confidence 99999999865 99999987642 3446777777766531 11222322 122221 111 1112335
Q ss_pred EEEEeecccc---------------------------------cccccHHHhHHhcccchhHHHHHHHHHHHHHCCCCCC
Q 013307 128 SCDISIDNLC---------------------------------GQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNP 174 (445)
Q Consensus 128 ~~DIs~~n~~---------------------------------g~~~s~ll~~~~~~~~~~r~Lv~~iK~Wak~rgL~~~ 174 (445)
.|-|++.... +++.+++.+.-+.--.....+++++|...+...
T Consensus 168 ~v~I~lTSp~~re~~~~~~~~~~~~~~dp~d~Ld~~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~R~~---- 243 (383)
T 4at7_B 168 SLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVP---- 243 (383)
T ss_dssp EEEEEEECHHHHHHHHHHHTTCCCCCCCCTTBCCHHHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHHHCG----
T ss_pred EEEEEECCcccccchhhcccccccccCChhhcCCHHHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHHhcC----
Confidence 5666553320 111111111101111246678888888555542
Q ss_pred CCCCCcchHHHHHHHHHhhhcCCCCCCCccccCCCCCCCcccccchhhhhHHHHHhhcccccccccccccCCCCCHHHHH
Q 013307 175 KTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLF 254 (445)
Q Consensus 175 ~~G~Lssy~l~lMvi~fLQ~~~p~ilP~Lq~l~~~~~~~~~~~~~~~~e~~~~e~~~~n~~~~~~~~~~~~n~~sl~~LL 254 (445)
..+.|+.|++-||+.+-+-.. ....++++.|
T Consensus 244 ~~~pL~~waLELL~~~ai~s~-------------------------------------------------~~~l~~~~af 274 (383)
T 4at7_B 244 TWGPLRGWPLELLCEKSIGTA-------------------------------------------------NRPMGAGEAL 274 (383)
T ss_dssp GGGGGTTHHHHHHHHHHHHTS-------------------------------------------------SSCCCHHHHH
T ss_pred CcCCCcHhHHHHHHHHHhhCC-------------------------------------------------CCCCCHHHHH
Confidence 236788899999888755421 0135789999
Q ss_pred HHHHHhhccCCCCcccceeeccCCceeeecccCCCCCCCCCeEEecCCC--CCCCccccCCHHHHHHHHHHHHHHHHHhh
Q 013307 255 VSFLEKFSGLSLKASELGICPFTGQWEHIRSNTRWLPNNHPLFIEDPFE--QPENSARAVSEKNLAKISNAFEMTHFRLT 332 (445)
Q Consensus 255 ~~FF~~Ys~~df~~~~~~Is~~~g~~~~~~~~~~~~~~~~~L~I~DPf~--~~~Nvar~vs~~~~~~I~~~f~~A~~~L~ 332 (445)
..+|+.-+..-|- . ..-.|.||.+ +.+|++ .++....+.|...-+.+.+++.
T Consensus 275 RRVLEllasG~lL---------p----------------~~pgI~DPcEk~pt~~~~-~lt~qq~e~it~sAQ~~LR~~a 328 (383)
T 4at7_B 275 RRVLECLASGIVM---------P----------------DGSGIYDPCEKEATDAIG-HLDRQQREDITQSAQHALRLAA 328 (383)
T ss_dssp HHHHHHHHTTTTS---------T----------------TSCCCBCTTCSSCCBTTT-TCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccc---------C----------------CCCCccCCCCCCCccccc-cCCHHHHHHHHHHHHHHHHHHh
Confidence 9999998852221 0 1235789999 777777 5788889999999999999998
Q ss_pred ccCCCcchhhh
Q 013307 333 STNQTRYALLS 343 (445)
Q Consensus 333 ~~~~~~~s~L~ 343 (445)
-.. .+.+|+
T Consensus 329 fgq--~~kVLG 337 (383)
T 4at7_B 329 FGQ--LHKVLG 337 (383)
T ss_dssp TTC--HHHHTT
T ss_pred hCC--cceecc
Confidence 764 345544
No 15
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=97.45 E-value=9.2e-05 Score=59.95 Aligned_cols=43 Identities=21% Similarity=0.371 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhhcCCCcEEEEecccccCCCCCC-CCcceEEeecC
Q 013307 31 VISDLREVVESVESLRGATVEPFGSFVSNLFSRW-GDLDISIELSN 75 (445)
Q Consensus 31 vi~~l~~il~~~~~~~~~~v~~fGS~~tGl~l~~-SDIDl~i~~~~ 75 (445)
+++.+.+.+++. .+...+..|||++.|-+.++ ||||++++.+.
T Consensus 3 ~l~~i~~~l~~~--~~~~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 3 HMKEIKEITKKD--VQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp HHHHHHHHHHHH--CTTCEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred HHHHHHHHHHHH--cCCcEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 456677777765 45589999999999999999 99999997653
No 16
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=97.25 E-value=0.00027 Score=58.89 Aligned_cols=51 Identities=25% Similarity=0.362 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHhhhc-CCC-cEEEEecccccCCCCCCCCcceEEeecC
Q 013307 25 WETRMKVISDLREVVESVES-LRG-ATVEPFGSFVSNLFSRWGDLDISIELSN 75 (445)
Q Consensus 25 ~~~R~~vi~~l~~il~~~~~-~~~-~~v~~fGS~~tGl~l~~SDIDl~i~~~~ 75 (445)
...+..+++.+++++..+.. +++ ..+..|||++.|-+.++||||++|....
T Consensus 9 ~~~~~~i~~~l~~~~~~l~~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 61 (111)
T 2rff_A 9 IESQIRMLKLAKEIVEEVASSFPNLEEVYIFGSRARGDYLDTSDIDILFVFKG 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTEEEEEEESHHHHSCCCTTCCEEEEEEESS
T ss_pred ccCHHHHHHHHHHHHHHHHHHcCCccEEEEEeeeecCCCCCCCCEEEEEEecC
Confidence 34566677777776665431 334 5899999999999999999999998764
No 17
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=97.10 E-value=0.00021 Score=58.01 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=26.3
Q ss_pred CCcEEEEecccccCCCCCCCCcceEEeecC
Q 013307 46 RGATVEPFGSFVSNLFSRWGDLDISIELSN 75 (445)
Q Consensus 46 ~~~~v~~fGS~~tGl~l~~SDIDl~i~~~~ 75 (445)
+-..+..|||++.|-+.++||||+++..+.
T Consensus 24 ~v~~v~LFGS~arG~~~~~SDiDl~V~~~~ 53 (98)
T 1wot_A 24 GAVRVRVFGSVARGEAREDSDLDLLVAFEE 53 (98)
T ss_dssp TCSSCEECSHHHHTCCCTTCCCEEEECCCS
T ss_pred CCcEEEEEccccCCCCCCCCCEEEEEEeCC
Confidence 346899999999999999999999997653
No 18
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=96.30 E-value=0.0027 Score=59.65 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhhhc-CCC-cEEEEecccccCCCCCCCCcceEEeecC
Q 013307 26 ETRMKVISDLREVVESVES-LRG-ATVEPFGSFVSNLFSRWGDLDISIELSN 75 (445)
Q Consensus 26 ~~R~~vi~~l~~il~~~~~-~~~-~~v~~fGS~~tGl~l~~SDIDl~i~~~~ 75 (445)
-.++.+.+.|+++++.+.. +++ ..|..|||++-|-+.++||||++|+...
T Consensus 17 ~~~q~Vq~eL~~ive~L~~~~~~i~~I~LFGS~ARG~~~~~SDIDilVv~~~ 68 (272)
T 4ebj_A 17 LYFQGVQHTIARWVDRLREEYADAVAILLKGSYARGDAATWSDIDFDVLVST 68 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred cChHHHHHHHHHHHHHHHHhcCCceEEEEEeceeCCCCCCCCceEEEEEecC
Confidence 3444555555555443321 233 6899999999999999999999998765
No 19
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=95.47 E-value=0.0067 Score=57.62 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=25.9
Q ss_pred cEEEEecccccCCCCCCCCcceEEeecC
Q 013307 48 ATVEPFGSFVSNLFSRWGDLDISIELSN 75 (445)
Q Consensus 48 ~~v~~fGS~~tGl~l~~SDIDl~i~~~~ 75 (445)
..+..|||++.|-+.++||||++|+...
T Consensus 32 ~~~~lfGS~arg~~~~~SDiD~~v~~~~ 59 (253)
T 1kny_A 32 KAIGVYGSLGRQTDGPYSDIEMMCVMST 59 (253)
T ss_dssp EEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred eEEEEEccccCCCCCCCCCeeEEEEecC
Confidence 6899999999999999999999998765
No 20
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=92.83 E-value=0.59 Score=46.03 Aligned_cols=130 Identities=13% Similarity=0.059 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEEecccccCCCCCCCCcceEEeecCCCcccccchhhHHHHHHHHHHHHHhcCCceEEEE
Q 013307 30 KVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQF 109 (445)
Q Consensus 30 ~vi~~l~~il~~~~~~~~~~v~~fGS~~tGl~l~~SDIDl~i~~~~~~~iss~~k~~~~~~L~~l~~~L~~~~~~~~v~~ 109 (445)
.+.+.|.+.++.+ .+...+.+-||+.-|-.+ .+|||+++..++.... ..+ ...++..+...|.+.+.+.++..
T Consensus 157 ~ia~~i~~~l~~~--~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~--~~~--~~~l~~~v~~~l~~~~~v~~~l~ 229 (335)
T 2fmp_A 157 QMQDIVLNEVKKV--DSEYIATVCGSFRRGAES-SGDMDVLLTHPSFTSE--STK--QPKLLHQVVEQLQKVHFITDTLS 229 (335)
T ss_dssp HHHHHHHHHHHHH--CTTCEEEECHHHHTTCSE-ESSEEEEEECTTBCSS--CBC--SSCHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHhc--CCCcEEEeccccccccCc-cCCeEEEEECCCcccc--ccc--hhhhHHHHHHHHHhCCcceeeee
Confidence 3445556666665 577999999999987766 5699999976642110 001 11367778888888888776655
Q ss_pred ecccccceE-EEEeec-----cceEEEEeecccccccccHHHhHHhcccchhHHHHHHHHHHHHHCCCC
Q 013307 110 VAHARVPIL-KFETIH-----QNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDIN 172 (445)
Q Consensus 110 I~~ArVPII-k~~~~~-----~gi~~DIs~~n~~g~~~s~ll~~~~~~~~~~r~Lv~~iK~Wak~rgL~ 172 (445)
....++-++ ++.... .++.|||-+......-.+ ++ ++.. -+...+-++.||+.+|+.
T Consensus 230 ~g~~k~~~v~~l~~~~~~~~~~~~rVDl~~vp~~~~~~a-Ll-~fTG----S~~fnr~lR~~A~~kG~k 292 (335)
T 2fmp_A 230 KGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCG-VL-YFTG----SDIFNKNMRAHALEKGFT 292 (335)
T ss_dssp ECSSEEEEEECCCCCTTCCCCCCEEEEEEECCGGGHHHH-HH-HHHC----CHHHHHHHHHHHHHTTEE
T ss_pred cCCceEEEEEEeCCcccccCCCceEEEEEEECHHHHHHH-HH-HhhC----CHHHHHHHHHHHHHcCCc
Confidence 555554333 332111 289999988664432222 11 2222 234557888999998863
No 21
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=91.49 E-value=0.55 Score=46.29 Aligned_cols=126 Identities=15% Similarity=0.233 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEEecccccCCCCCCCCcceEEeecCCCcccccchhhHHHHHHHHHHHHHhcCCceEEEE
Q 013307 30 KVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQF 109 (445)
Q Consensus 30 ~vi~~l~~il~~~~~~~~~~v~~fGS~~tGl~l~~SDIDl~i~~~~~~~iss~~k~~~~~~L~~l~~~L~~~~~~~~v~~ 109 (445)
.+.+.|.+.++.+ .+...+.+-||+.-|-.+ .+|||+++..++... ...+|..+...|.+.+.+.++-.
T Consensus 154 ~ia~~i~~~l~~~--~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~--------~~~ll~~v~~~l~~~~~i~~~l~ 222 (335)
T 2bcq_A 154 EIEQTVQKAAQAF--NSGLLCVACGSYRRGKAT-CGDVDVLITHPDGRS--------HRGIFSRLLDSLRQEGFLTDDLV 222 (335)
T ss_dssp HHHHHHHHHHHTT--CTTCEEEECHHHHTTCSE-ESSEEEEEECTTSST--------TTTCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhc--CCCcEEEEccccccCCCC-CCCeEEEEecCCchh--------hhhHHHHHHHHHHhCCchHHHhh
Confidence 4445566666665 578899999999988766 569999997665321 12467788888888777765433
Q ss_pred ec-----cccc-ceEEEEe-eccceEEEEeecccccccccHHHhHHhcccchhHHHHHHHHHHHHHCCCC
Q 013307 110 VA-----HARV-PILKFET-IHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDIN 172 (445)
Q Consensus 110 I~-----~ArV-PIIk~~~-~~~gi~~DIs~~n~~g~~~s~ll~~~~~~~~~~r~Lv~~iK~Wak~rgL~ 172 (445)
.. ..++ =+.++.. ...++.|||-+......-.+ ++ ++.. -+...+-++.||+.+|+.
T Consensus 223 ~~~~~g~~~k~~~v~~l~~~~~~~~rVDl~~vp~~~~g~A-Ll-~fTG----S~~fnr~lR~~A~~~G~k 286 (335)
T 2bcq_A 223 SQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACA-LL-YFTG----SAHFNRSMRALAKTKGMS 286 (335)
T ss_dssp CCTTSTTCCEEEEEECCSSTTCCCEEEEEEECCGGGHHHH-HH-HHHC----CHHHHHHHHHHHHHTTCE
T ss_pred ccccCCCCceEEEEEEccCCCCCceEEEEEEECHHHHHHH-HH-HhhC----CHHHHHHHHHHHHHcCCC
Confidence 21 1122 1112211 01689999988664432222 21 2222 234557889999999873
No 22
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=88.18 E-value=0.42 Score=46.11 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=38.3
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHHHhhhcCCC-cEEEEecccccCCCCCCCCcceEEeecC
Q 013307 17 MLNPLREDWETRMKVISDLREVVESVESLRG-ATVEPFGSFVSNLFSRWGDLDISIELSN 75 (445)
Q Consensus 17 ~~~Pt~ee~~~R~~vi~~l~~il~~~~~~~~-~~v~~fGS~~tGl~l~~SDIDl~i~~~~ 75 (445)
.+.|.--.....+++++.|.+.+++- +. ..|..+||++.|-.-..||+|++++..+
T Consensus 13 ~~~~~~~~m~~~~e~l~~I~~~~~~d---~~i~av~l~GS~~~~~~D~~SD~Di~~vV~~ 69 (287)
T 3jz0_A 13 GLVPRGSHMLKQKELIANVKNLTESD---ERITACMMYGSFTKGEGDQYSDIEFYIFLKH 69 (287)
T ss_dssp ---------CHHHHHHHHHHHHHHHC---TTEEEEEECSGGGTTCCCTTCCEEEEEEECG
T ss_pred CcCCCCCCccCHHHHHHHHHHHHhcC---CCEEEEEEECCccCCCCCCccceeEEEEEcC
Confidence 34455555566677888888877652 34 4788999999999999999999998765
No 23
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=83.53 E-value=0.88 Score=40.50 Aligned_cols=104 Identities=12% Similarity=0.092 Sum_probs=62.0
Q ss_pred CCCcEEEEecccccCCCCCCCCcceEEeecCCCcccccchhhHHHHHHHHHHHHHh--cCCce-EEEEecccccceEEEE
Q 013307 45 LRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQ--KGGYR-RLQFVAHARVPILKFE 121 (445)
Q Consensus 45 ~~~~~v~~fGS~~tGl~l~~SDIDl~i~~~~~~~iss~~k~~~~~~L~~l~~~L~~--~~~~~-~v~~I~~ArVPIIk~~ 121 (445)
.|++++.+-||+.-|..+ .+|||+++..++ ...+...|.+ .+.+. ++......++-+ ++.
T Consensus 29 ~~g~~v~iaGS~RRgket-~gDiDiLit~~~---------------~~~v~~~L~~~~~~~v~~~~l~~g~~k~~~-~l~ 91 (174)
T 1jaj_A 29 ILSKNIVAVGSLRREEKM-LNDVDLLIIVPE---------------KKLLKHVLPNIRIKGLSFSVKVCGERKCVL-FIE 91 (174)
T ss_dssp ECTTTEEEEEHHHHTCSE-ECCEEEEEEESS---------------HHHHHTSSSEEEESSCEEEEEEETTTEEEE-EEE
T ss_pred CCCcEEEEeccccCCCCC-CCCEEEEEecCC---------------HHHHHHHHHhccCCceeHhHeecCCCeEEE-EeC
Confidence 478999999999988766 459999997653 1233444555 55555 443333333222 332
Q ss_pred eeccceEEEEeecccccccccHHHhHHhcccchhHHHHHHHHHHHHHCCC
Q 013307 122 TIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDI 171 (445)
Q Consensus 122 ~~~~gi~~DIs~~n~~g~~~s~ll~~~~~~~~~~r~Lv~~iK~Wak~rgL 171 (445)
....++.|||-+......-.+-+ ++.. -+...+-++.||+.+|+
T Consensus 92 ~~~~~~rVDl~~vp~~~fg~ALl--~fTG----Sk~hn~~lR~~A~~kG~ 135 (174)
T 1jaj_A 92 WEKKTYQLDLFTALAEEKPYAIF--HFTG----PVSYLIRIRAALKKKNY 135 (174)
T ss_dssp SSSCCEEEEEEEEETTCHHHHHH--HHHS----CHHHHHHHHHHHHHTTE
T ss_pred CCCCceEEEEEEeCHHHHHHHHH--HhHC----CHHHHHHHHHHHHHcCC
Confidence 11278999998866443222211 2222 23445778889999886
No 24
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=83.40 E-value=2.2 Score=42.34 Aligned_cols=65 Identities=23% Similarity=0.268 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEEecccccCCCCCCCCcceEEeecCCCcccccchhhHHHHHHHHHHHHHhcCCce
Q 013307 30 KVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYR 105 (445)
Q Consensus 30 ~vi~~l~~il~~~~~~~~~~v~~fGS~~tGl~l~~SDIDl~i~~~~~~~iss~~k~~~~~~L~~l~~~L~~~~~~~ 105 (445)
.+.+.|.+.++.+ .|...+.+-||+.-|-.+ .+|||+++..++... ...+|..+...|.+.+.+.
T Consensus 161 ~i~~~i~~~l~~~--~~~~~v~i~GSyRRgket-~gDvDilit~~~~~~--------~~~ll~~v~~~L~~~~~i~ 225 (360)
T 2ihm_A 161 ALQQLIEAAVRQT--LPGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQ--------EVGLLPKVMSCLQSQGLVL 225 (360)
T ss_dssp HHHHHHHHHHHTT--CTTCEEEECHHHHTTCSE-ESEEEEEEECSSTTT--------TTTHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHhc--CCCcEEEEccccccCCCc-cCCeEEEEecCChhh--------hhhHHHHHHHHHHhCCCee
Confidence 4445556666665 578999999999988766 569999997665321 1147888888888877665
No 25
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=83.11 E-value=6 Score=41.66 Aligned_cols=114 Identities=11% Similarity=0.143 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhhhcCCCcEEEEecccccCCCCCCCCcceEEeecCCCcccccchhhHHHHHHHHHHHHHhcCCceEEEEe
Q 013307 31 VISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFV 110 (445)
Q Consensus 31 vi~~l~~il~~~~~~~~~~v~~fGS~~tGl~l~~SDIDl~i~~~~~~~iss~~k~~~~~~L~~l~~~L~~~~~~~~v~~I 110 (445)
+.+.|.+.++.+ .+..++.+-||+.-|-.+ .+|||+++..++. . .+...|.+.+.+.++...
T Consensus 166 ~~~~i~~~l~~~--~~~~~~~~~Gs~RRgke~-~gDiD~li~~~~~-----------~----~v~~~l~~~~~~~~~~~~ 227 (575)
T 3b0x_A 166 LARSLLEAIRAL--PGVERAELCGSARRYKDT-VGDLDFLVASREG-----------E----RAVEGFVRLPQVKEVYAK 227 (575)
T ss_dssp HHHHHHHHHHTS--TTCCEEEECHHHHTTCSE-ESSEEEEEECSSH-----------H----HHHHHHHTSTTEEEEEEE
T ss_pred HHHHHHHHHHhC--CCCcEEEEccccccCCCc-cCCeEEEEeCCCH-----------H----HHHHHHHhCcchhhHhhc
Confidence 344455555554 356899999999987765 4599999965531 1 244555555666554332
Q ss_pred cccccceEEEEeeccceEEEEeecccccccccHHHhHHhcccchhHHHHHHHHHHHHHCCCC
Q 013307 111 AHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDIN 172 (445)
Q Consensus 111 ~~ArVPIIk~~~~~~gi~~DIs~~n~~g~~~s~ll~~~~~~~~~~r~Lv~~iK~Wak~rgL~ 172 (445)
...++-+ ++ ..|+.|||-+......-. .++ ++.. -+...+-++.||+.+|+.
T Consensus 228 g~~k~~~-~~---~~~~rvDl~~~~~~~~~~-al~-~~TG----s~~~n~~lR~~A~~~g~~ 279 (575)
T 3b0x_A 228 GKERATV-FL---KNGLQVDLRVVPPESYGA-GLQ-YLTG----SAAHSIRLRALAQEKGLK 279 (575)
T ss_dssp CSSEEEE-EE---TTSCEEEEEEECGGGHHH-HHH-HHHC----CHHHHHHHHHHHHHTTCE
T ss_pred CCCceEE-Ec---cCCcEEEEEEECHHHHHH-HHH-HhhC----CHHHHHHHHHHHHHcCCC
Confidence 2333222 22 368999998866443222 222 2222 234557889999998874
No 26
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=73.44 E-value=9 Score=38.20 Aligned_cols=67 Identities=24% Similarity=0.242 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEEecccccCCCCCCCCcceEEeecCCCcccccchhhHHHHHHHHHHHHHhcCCce
Q 013307 30 KVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYR 105 (445)
Q Consensus 30 ~vi~~l~~il~~~~~~~~~~v~~fGS~~tGl~l~~SDIDl~i~~~~~~~iss~~k~~~~~~L~~l~~~L~~~~~~~ 105 (445)
.+.+.|.+.++.+ .+...+.+-||+.-|-.+ .+|||+++..++.. ......+|..+...|.+.+.+.
T Consensus 181 ~ia~~i~~~l~~~--~~~~~v~i~GSyRRgket-~gDvDilit~~~~~------~~~~~~ll~~vv~~L~~~~~i~ 247 (381)
T 1jms_A 181 AVSMLVKEAVVTF--LPDALVTMTGGFRRGKMT-GHDVDFLITSPEAT------EDEEQQLLHKVTDFWKQQGLLL 247 (381)
T ss_dssp HHHHHHHHHHHHH--CTTCEEEECHHHHTTCSC-BSSEEEEEECTTCC------HHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHhc--CCCcEEEEccccccCCCC-cCCeEEEEeCCCcc------ccchhhHHHHHHHHHHhCCCcc
Confidence 3445555666665 578999999999988776 56999999766532 1112247888888898877663
No 27
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=68.26 E-value=14 Score=35.41 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhhcCCCc-EEEEecccccCC--CCCCCCcceEEeecC
Q 013307 30 KVISDLREVVESVESLRGA-TVEPFGSFVSNL--FSRWGDLDISIELSN 75 (445)
Q Consensus 30 ~vi~~l~~il~~~~~~~~~-~v~~fGS~~tGl--~l~~SDIDl~i~~~~ 75 (445)
.+++.|.++.+. .+.+ -|...||.+++- .-.-||+||+++..+
T Consensus 8 em~~~i~~~a~~---d~rI~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d 53 (294)
T 2pbe_A 8 EMMDIFLDFALN---DERIRLVTLEGSRTNRNIPPDNFQDYDISYFVTD 53 (294)
T ss_dssp HHHHHHHHHHHH---CTTEEEEEEC------------CCCEEEEEEESC
T ss_pred HHHHHHHHHHcC---CcCEEEEEEecCCCCCCCCCCCcccceEEEEEcC
Confidence 466667666665 2334 677889999965 677899999998764
No 28
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA polymerase beta motif; 2.00A {Escherichia coli} SCOP: a.24.16.4 d.218.1.9
Probab=40.05 E-value=27 Score=35.30 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=26.1
Q ss_pred CcEEEEecccccCCCCCCCCcceEEeecC
Q 013307 47 GATVEPFGSFVSNLFSRWGDLDISIELSN 75 (445)
Q Consensus 47 ~~~v~~fGS~~tGl~l~~SDIDl~i~~~~ 75 (445)
++.|..+||++-+=-.+.||||++++.++
T Consensus 154 ~~aviamGk~Gr~EL~~~SDiDli~l~~~ 182 (440)
T 1v4a_A 154 PLLILGMGKLGGGELNFSSDIDLIFAWPE 182 (440)
T ss_dssp CCEEEECHHHHTTCCCSSCCEEEEEEECC
T ss_pred CEEEEEeccccccCcCCCCCcceEEEeCC
Confidence 47899999999999999999999998764
No 29
>3er9_B Poly(A) polymerase catalytic subunit; polyadenylate polymerase, translocation, single tranded RNA polymerase, RNA protein complex, processivity, heterodimer; HET: 3AT; 2.06A {Vaccinia virus WR} SCOP: e.69.1.1 PDB: 3er8_C* 3erc_C* 3owg_A 2ga9_D* 2gaf_D
Probab=36.32 E-value=12 Score=37.29 Aligned_cols=109 Identities=17% Similarity=0.255 Sum_probs=51.2
Q ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHH---HHHHHHHHHhhhcCCCcEEEEecccccCCCCC---CCCcceEEeecCCCc
Q 013307 5 NVLEPILKDILGMLNPLREDWETRMKV---ISDLREVVESVESLRGATVEPFGSFVSNLFSR---WGDLDISIELSNGSC 78 (445)
Q Consensus 5 ~~L~~ei~~f~~~~~Pt~ee~~~R~~v---i~~l~~il~~~~~~~~~~v~~fGS~~tGl~l~---~SDIDl~i~~~~~~~ 78 (445)
+.|-.++..-+.-..|++.+...|..+ +..+.+++++.....+-...+||||..-+-.| ..|||++=.
T Consensus 135 ~~la~~iL~synv~~~~~~~vmgRh~VSdLV~~V~klmeEyLrrhNk~CicYGSySlhlLNp~I~YgDIDilqT------ 208 (479)
T 3er9_B 135 EELARDMLNSMNVAVIDKAKVMGRHNVSSLVKNVNKLMEEYLRRHNKSCICYGSYSLYLINPNIRYGDIDILQT------ 208 (479)
T ss_dssp HHHHHHHHHHHCCCC-----------CCTTHHHHHHHHHHHHHHCTTTEEEESHHHHHTTCTTCCCCSCEEEES------
T ss_pred HHHHHHHHHhcccccCCcccccccccccHHHHHHHHHHHHHHHhcCCCeEEeeceeeeecCCCcccCCcceeee------
Confidence 344455555454455665455555433 33333333333222456788999998766655 479999742
Q ss_pred ccccchhhHHHHHHHHHHHHHhcCCceEEEEecccccc----eEEEEeeccceEEE
Q 013307 79 ISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVP----ILKFETIHQNISCD 130 (445)
Q Consensus 79 iss~~k~~~~~~L~~l~~~L~~~~~~~~v~~I~~ArVP----IIk~~~~~~gi~~D 130 (445)
..+.+|-.++-.++=--+ .++-. -+|| -+.+++...+.-+|
T Consensus 209 -------Nar~fLInlafLI~FitG-~~v~L---lkVPyLknyivlkdee~~hIiD 253 (479)
T 3er9_B 209 -------NSRTFLIDLAFLIKFITG-NNIIL---SKIPYLRNYMVIKDENDNHIID 253 (479)
T ss_dssp -------SHHHHHHHHHHHHHHHHC-CCCEE---EECTTSSSEEEEECTTCCEEEE
T ss_pred -------ccHHHHHHHHHHHhhhcC-ceEEE---EEcccccceEEEEecCCCEEEE
Confidence 123566666655542111 22222 2677 34455544455555
No 30
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl transferase domain, ATP-binding, nucleotide-BIND nucleotidyltransferase; 2.40A {Escherichia coli}
Probab=33.31 E-value=48 Score=34.10 Aligned_cols=30 Identities=20% Similarity=0.166 Sum_probs=26.4
Q ss_pred CcEEEEecccccCCCCCCCCcceEEeecCC
Q 013307 47 GATVEPFGSFVSNLFSRWGDLDISIELSNG 76 (445)
Q Consensus 47 ~~~v~~fGS~~tGl~l~~SDIDl~i~~~~~ 76 (445)
++.|..+|+++-+=-...||||++++.+..
T Consensus 234 ~~aviamGklGg~EL~~~SDiDlifv~~~~ 263 (498)
T 3k7d_A 234 GFAVVGYGKLGGWELGYSSDLDLIFLHDCP 263 (498)
T ss_dssp SEEEEEEHHHHTTCCCTTCCEEEEEEECCC
T ss_pred CEEEEeeccccccccCcccccceeeeecCc
Confidence 478999999999999999999999988753
No 31
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=31.71 E-value=27 Score=30.46 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhhcCCCcEEEEeccccc---CCCCCCCCcceEE
Q 013307 28 RMKVISDLREVVESVESLRGATVEPFGSFVS---NLFSRWGDLDISI 71 (445)
Q Consensus 28 R~~vi~~l~~il~~~~~~~~~~v~~fGS~~t---Gl~l~~SDIDl~i 71 (445)
|+.+...|+.+...+ ...++.-...||++. |+-...-|||+++
T Consensus 15 ~~~~~~~L~~i~~~L-~~~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i 60 (169)
T 2fcl_A 15 RPEYLRVLRXIYDRL-XNEXVNWVVTGSLSFALQGVPVEVHDIDIQT 60 (169)
T ss_dssp CHHHHHHHHHHHHHH-TTSSCCEEEEHHHHHHHTTCCCCCCSEEEEE
T ss_pred cHHHHHHHHHHHHHH-HhcCCCEEEeHHHHHHHcCCCCCCCccEEEe
Confidence 455666666666654 245789999999965 7877788999998
No 32
>3nku_A DRRA, SIDM; posttranslational modification, ampylation, adenylylation, R RAB1, vesicular transport, protein transport; HET: MSE PGE; 2.10A {Legionella pneumophila subsp}
Probab=24.98 E-value=2.7e+02 Score=23.30 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhhh--cCCCcEEEEecccccCCCCCCCCcceEEeecCC
Q 013307 25 WETRMKVISDLREVVESVE--SLRGATVEPFGSFVSNLFSRWGDLDISIELSNG 76 (445)
Q Consensus 25 ~~~R~~vi~~l~~il~~~~--~~~~~~v~~fGS~~tGl~l~~SDIDl~i~~~~~ 76 (445)
.-.|+..-+.|-.....+- --.+..|+--||.+-.-++..||+|..++..+.
T Consensus 62 nglrqiykemiydafdalgvempkdmevhfagslakaqateysdldafvivknd 115 (213)
T 3nku_A 62 NGLRQIYKEMIYDAFDALGVEMPKDMEVHFAGSLAKAQATEYSDLDAFVIVKND 115 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCTTCEEEEECC---------CCCEEEEECSST
T ss_pred HHHHHHHHHHHHHHHHHhcccCCccceehhhhhHHHhhcccccccceEEEecch
Confidence 3345544444444444331 024689999999999999999999999987764
No 33
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=24.59 E-value=73 Score=30.37 Aligned_cols=41 Identities=5% Similarity=-0.037 Sum_probs=29.7
Q ss_pred HHHHHHhhhcCCC--cEEEEecccccCCCCCCCCcceEEeecC
Q 013307 35 LREVVESVESLRG--ATVEPFGSFVSNLFSRWGDLDISIELSN 75 (445)
Q Consensus 35 l~~il~~~~~~~~--~~v~~fGS~~tGl~l~~SDIDl~i~~~~ 75 (445)
++.+-++....++ +.+..|||..+|-.+.+||+|+.|+...
T Consensus 6 lr~iy~e~a~~~~tlgvi~i~~~~~~~~l~d~fDi~LlVI~~~ 48 (290)
T 3c18_A 6 TRTIYSEYAAYPETQGIIAVEKRQPRDSLTDQFDVLLLVITRD 48 (290)
T ss_dssp HHHHHHHHHHSTTEEEEEEEECSSTTCGGGTTSSEEEEEEECC
T ss_pred HHHHHHHhccCCCceEEEEEcCCCCCCCcccccceEEEEEecC
Confidence 3344443333444 5666699999999999999999998654
Done!