AT1G80170 protein (Arabidopsis thaliana)

STRING 9.05

AT1G80170 protein (Arabidopsis thaliana) - STRING network view

This is the evidence view. Different line colors represent the types of evidence for the association.




confidence	evidence	actions	interactive	advanced	more	less	save

Your Input:
	AT1G80170	polygalacturonase, putative / pectinase, putative; polygalacturonase, putative / pectinase, putative; FUNCTIONS IN- polygalacturonase activity; INVOLVED IN- carbohydrate metabolic process; LOCATED IN- plant-type cell wall; EXPRESSED IN- 15 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- Pectin lyase fold/virulence factor (InterPro-IPR011050), Pectin lyase fold (InterPro-IPR012334), Glycoside hydrolase, family 28 (InterPro-IPR000743), Parallel beta-helix repeat (InterPro-IPR006626); BEST Arabidopsis thaliana protein match is- polygalacturonase, putative [...] (444 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT2G42860	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (224 aa)			•	0.929
	HEC3	HEC3 (HECATE 3); DNA binding / transcription factor; HECATE 3 (HEC3); FUNCTIONS IN- transcripti [...] (224 aa)			•	0.659
	AT2G43210	UBX domain-containing protein; UBX domain-containing protein; FUNCTIONS IN- molecular_function [...] (531 aa)			•	0.655
	AT1G03230	extracellular dermal glycoprotein, putative / EDGP, putative; extracellular dermal glycoprotein [...] (434 aa)			•	0.506
	anac089	anac089 (Arabidopsis NAC domain containing protein 89); transcription factor; Arabidopsis NAC d [...] (340 aa)		•		0.462
	NLM1	NLM1; arsenite transmembrane transporter/ water channel; an aquaporin whose expression level is [...] (296 aa)		•		0.462
	WIN2	WIN2 (HOPW1-1-INTERACTING 2); protein serine/threonine phosphatase; Encodes HopW1-1-Interacting [...] (311 aa)			•	0.438
	AT3G07950	rhomboid protein-related; rhomboid protein-related; FUNCTIONS IN- molecular_function unknown; I [...] (304 aa)			•	0.435
	AT1G09440	protein kinase family protein; protein kinase family protein; FUNCTIONS IN- protein serine/thre [...] (466 aa)	•			0.429
	QRT3	QRT3 (QUARTET 3); polygalacturonase; Encodes a polygalacturonase that plays a direct role in de [...] (481 aa)			•	0.408

Views:

Info & Parameters ...

Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:

Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining

required confidence (score):

interactors shown:

or custom value:

or custom limit:

additional (white) nodes

Server load: very high (>100%)

Permalink