BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013309
(445 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 18/207 (8%)
Query: 149 VQGGGTINGMGQ--------EWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNS 200
+ G GTI+G G WW + ++ P I +K KN + N+ ++NS
Sbjct: 113 IYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINS 172
Query: 201 QQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNS 260
H+ F++ + P+ + NTDGI +S+ + + S + TGDD ++I
Sbjct: 173 PNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYK 232
Query: 261 SLIRIRNFAC-----GPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGG 315
RN + G GHG+SIGS ++ ++++ V ++ T NG+RIK+ +
Sbjct: 233 GRAETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGLRIKSDKSA 287
Query: 316 SGSATNIQFLDVLMKNVSNPIIIDQYY 342
+G +++ +V+MKNV+ PI+ID Y
Sbjct: 288 AGVVNGVRYSNVVMKNVAKPIVIDTVY 314
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 126/260 (48%), Gaps = 21/260 (8%)
Query: 146 HLTVQG--GGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCK-NLKVQNLRVVNSQQ 202
++T+ G G I+G GQ +W K + +N + I K N K+ NL + N
Sbjct: 70 NITITGASGHVIDGNGQAYWDG--KGSNSNSNQKPDHFIVVQKTTGNSKITNLNIQNWPV 127
Query: 203 MHIAFTNCLRVVISNLEVIAPA-ESPN-----------TDGIHISASRGVEVKNSIVGTG 250
T ++ IS L + A + PN TDG IS+S V + N+ V
Sbjct: 128 HCFDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQ 187
Query: 251 DDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIK 310
DDC+++ ++++ + N C GHG+SIGS+G + +V + + + + N+QNG RIK
Sbjct: 188 DDCVAVTSGTNIV-VSNMYCSGGHGLSIGSVGGKSDNV-VDGVQFLSSQVVNSQNGCRIK 245
Query: 311 TWQGGSGSATNIQFLDVLMKNVSN-PIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGT 369
+ G +G+ N+ + ++ + N+S + + Q Y + P T+ VK+ NI FI + GT
Sbjct: 246 SNSGATGTINNVTYQNIALTNISTYGVDVQQDYLNGG-PTGKPTNGVKISNIKFIKVTGT 304
Query: 370 SATEEAIKFACSDDSPCEGL 389
A+ F D C G
Sbjct: 305 VASSAQDWFILCGDGSCSGF 324
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 126/284 (44%), Gaps = 19/284 (6%)
Query: 130 WKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKN 189
WKG R + + +T+ G I+G G WW TN + P + H ++
Sbjct: 58 WKGPLIR---FGGKDLTVTMADGAVIDGDGSRWWDSKG----TNGGKTKPKFMYIHDVED 110
Query: 190 LKVQNLRVVNS--QQMHIAFTNCL--RVVISNLEVIAPAESPNTDGIHISASRGVEVKNS 245
+ + + N+ Q + + TN I N + NTDG IS S GV + +
Sbjct: 111 STFKGINIKNTPVQAISVQATNVHLNDFTIDNSDGDDNG-GHNTDGFDISESTGVYISGA 169
Query: 246 IVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQN 305
V DDCI+I S I C GHG+SIGS+G + + + ++ + + +SN+ N
Sbjct: 170 TVKNQDDCIAINSGES-ISFTGGTCSGGHGLSIGSVGGRDDNT-VKNVTISDSTVSNSAN 227
Query: 306 GVRIKTWQGGSGSATNIQFLDVLMKNVSN-PIIIDQYYCDSPVPCANQTSAVKVENITFI 364
GVRIKT +G + I + ++ + +++ I+I+Q Y ++ P ++ + + ++T
Sbjct: 228 GVRIKTIYKETGDVSEITYSNIQLSGITDYGIVIEQDY-ENGSPTGTPSTGIPITDVTVD 286
Query: 365 HIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFC 408
+ GT + + D C V L SGG C
Sbjct: 287 GVTGTLEDDATQVYILCGDGSCSDWTWSGVDL---SGGKTSDKC 327
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 146/315 (46%), Gaps = 31/315 (9%)
Query: 67 FNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISG-TIVAPK 125
F D A K +C+ IV AG T +D++G KS T+ G T K
Sbjct: 5 FTDAAAAIKG--KASCTSIILNGIVVPAGTT-----LDMTG-LKSGTTVTFQGKTTFGYK 56
Query: 126 DPDVWKGLNRRRWLYFNRVN-HLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITF 184
+ W+G + F+ N ++ G +I+ G WW +N + P
Sbjct: 57 E---WEG----PLISFSGTNININGASGHSIDCQGSRWWDS----KGSNGGKTKPKFFYA 105
Query: 185 HKCKNLKVQNLRVVNS--QQMHIAFTNCLRV--VISNLEVIAPAESPNTDGIHISASRGV 240
H K+ ++ L V+N+ Q I L V VI + A NTD + +S GV
Sbjct: 106 HSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGV 165
Query: 241 EVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLG-KSNSSVRIHDIMVYGAL 299
+ + V DDC++I + + I C GHG+SIGS+G +S+++V+ + + +
Sbjct: 166 YISGANVKNQDDCLAI-NSGTNITFTGGTCSGGHGLSIGSVGGRSDNTVKT--VTISNSK 222
Query: 300 ISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSN-PIIIDQYYCDSPVPCANQTSAVKV 358
I N+ NGVRIKT G +GS + + + + + N++ I+I+Q Y ++ P T+ V +
Sbjct: 223 IVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDY-ENGSPTGTPTNGVPI 281
Query: 359 ENITFIHIKGTSATE 373
+T I G+ A+
Sbjct: 282 TGLTLSKITGSVASS 296
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 125/271 (46%), Gaps = 21/271 (7%)
Query: 146 HLTVQG--GGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQN--LRVVNSQ 201
H+TV G G IN G WW P + L ++N L + Q
Sbjct: 96 HITVTGASGHLINCDGARWWDGKGTSGKKKPKFFYAHGLDSSSITGLNIKNTPLMAFSVQ 155
Query: 202 QMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSS 261
I FT+ V I+N + NTD + S GV + V DDC++ V +
Sbjct: 156 ANDITFTD---VTINNADGDTQG-GHNTDAFDVGNSVGVNIIKPWVHNQDDCLA-VNSGE 210
Query: 262 LIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATN 321
I C GHG+SIGS+G +++V + ++ + + +SN++N VRIKT G +GS +
Sbjct: 211 NIWFTGGTCIGGHGLSIGSVGDRSNNV-VKNVTIEHSTVSNSENAVRIKTISGATGSVSE 269
Query: 322 IQFLDVLMKNVSN-PIIIDQYYCDSPVPCANQTSAVKVENITFIHIKG---TSATEEAIK 377
I + +++M +S+ ++I Q Y D P T+ V ++++ + G + ATE I
Sbjct: 270 ITYSNIVMSGISDYGVVIQQDYEDGK-PTGKPTNGVTIQDVKLESVTGSVDSGATE--IY 326
Query: 378 FACSDDSPCEGLFLEDVQLVSHSGGIAKSFC 408
C S C +DV++ +GG + C
Sbjct: 327 LLCGSGS-CSDWTWDDVKV---TGGKKSTAC 353
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 126/272 (46%), Gaps = 25/272 (9%)
Query: 147 LTVQG--GGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNS--QQ 202
LT+ G G +ING G WW N + P H N + L++VNS Q
Sbjct: 74 LTITGASGHSINGDGSRWWDGEGG----NGGKTKPKFFAAHSLTNSVISGLKIVNSPVQV 129
Query: 203 MHIAFTNCLR---VVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGN 259
+A ++ L + I N + NTD I S V + + V DDC++ V +
Sbjct: 130 FSVAGSDYLTLKDITIDNSDG-DDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVA-VNS 187
Query: 260 SSLIRIRNFACGPGHGISIGSLG-KSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGS 318
I C GHG+SIGS+G +S+++V+ ++ + I N+ NGVRIKT +GS
Sbjct: 188 GENIYFSGGYCSGGHGLSIGSVGGRSDNTVK--NVTFVDSTIINSDNGVRIKTNIDTTGS 245
Query: 319 ATNIQFLDVLMKNVSN-PIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEA-I 376
+++ + D+ + +++ I++ Q Y D+ + T+ V + + ++ G+ + I
Sbjct: 246 VSDVTYKDITLTSIAKYGIVVQQNYGDTS---STPTTGVPITDFVLDNVHGSVVSSGTNI 302
Query: 377 KFACSDDSPCEGLFLEDVQLVSHSGGIAKSFC 408
+C S C DV + SGG S C
Sbjct: 303 LISCGSGS-CSDWTWTDVSV---SGGKTSSKC 330
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 106/229 (46%), Gaps = 12/229 (5%)
Query: 189 NLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVG 248
+ V ++ +V++ H C + N+ + E DGI + S + V + V
Sbjct: 137 HFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGNEG-GLDGIDVWGSN-IWVHDVEVT 194
Query: 249 TGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVR 308
D+C+++ ++ I + + C G ++GSLG + + DI VY + + + N +
Sbjct: 195 NKDECVTVKSPANNILVESIYCNWSGGCAMGSLG---ADTDVTDI-VYRNVYTWSSNQMY 250
Query: 309 IKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKG 368
+ GGSG+ +N+ + + + + ID Y+ + V++ NIT + KG
Sbjct: 251 MIKSNGGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAGD---GVQLNNITVKNWKG 307
Query: 369 TSA---TEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGS 414
T A T I+ CSD +PC L LED+ + + SG C AYGS
Sbjct: 308 TEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGS 356
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/342 (23%), Positives = 140/342 (40%), Gaps = 68/342 (19%)
Query: 53 RVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSR 112
R + + DFGA+GDG D +E+F A ++ S +++ G FL PI + KS
Sbjct: 26 REVNLLDFGARGDGRTDCSESFKRAIEE-LSKQGGGRLIVPEG-VFLTGPIHL----KSN 79
Query: 113 LTLEISGTIVAPKDPDVW--------KGL---NRRRWLYFNRVNHLTVQGGGTINGMG-- 159
+ L + GTI DP+ + +G+ N +Y ++ + G G ++G
Sbjct: 80 IELHVKGTIKFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADN 139
Query: 160 QEWWSRSCKIN----------------------TTNPCRHA---------PTAITFHKCK 188
+ WW K + P P+ + F++C+
Sbjct: 140 EHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQFYRCR 199
Query: 189 NLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVG 248
N+ V+ ++++NS I V+I N+E+ + PN DGI + + + ++
Sbjct: 200 NVLVEGVKIINSPMWCIHPVLSENVIIRNIEI--SSTGPNNDGIDPESCKYMLIEKCRFD 257
Query: 249 TGDDCISI----------VGNSS---LIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMV 295
TGDD + I +G S L+R HG G + S S + +++
Sbjct: 258 TGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHG---GLVIGSEMSGGVRNVVA 314
Query: 296 YGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPII 337
+ N + +R+KT G NI F+D + NVS +I
Sbjct: 315 RNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVI 356
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 228 NTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSS 287
NTDG +SA+ V ++N IV DDCI+I + + IR N C GHGISIGS+ +
Sbjct: 151 NTDGFDVSANN-VTIQNCIVKNQDDCIAI-NDGNNIRFENNQCSGGHGISIGSIA---TG 205
Query: 288 VRIHDIMVYGALISNTQNGVRIK 310
+ ++++ G ++ + GVRIK
Sbjct: 206 KHVSNVVIKGNTVTRSMYGVRIK 228
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 30/187 (16%)
Query: 214 VISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISI-VGNSSLIRIRNFACGP 272
V++N + ++ N DGI S+ V V N+ TGDDCI+ G + + G
Sbjct: 365 VVANGLIHQTYDANNGDGIEFGNSQNVMVFNNFFDTGDDCINFAAGTGEKAQEQEPMKGA 424
Query: 273 ---------GHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQ 323
GHG + S++ I DI+ ++ T G+R K+ G A N+
Sbjct: 425 WLFNNYFRMGHGAIVTG---SHTGAWIEDILAENNVMYLTDIGLRAKSTSTIGGGARNVT 481
Query: 324 FLDVLMKNVSNPIIIDQY-YCDS-------PVPCANQTSAVKVENITF---------IHI 366
F + M++++ +++ Y DS P Q ++N+T I I
Sbjct: 482 FRNNAMRDLAKQVMVMTLDYADSNANIDYPPAKIPAQFYDFTLKNVTVDNSTGKNPSIEI 541
Query: 367 KGTSATE 373
KG +A +
Sbjct: 542 KGDTANK 548
>pdb|2VBK|A Chain A, Native Tailspike Protein Of Bacteriophage Sf6
pdb|2VBM|A Chain A, Tailspike Protein Of Bacteriophage Sf6 Complexed With
Tetrasaccharide
Length = 514
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 39 LPHSGSNGTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSA 94
LP + K+K I + DFG DG D+ +A NA S P+ ++ A
Sbjct: 36 LPKAVLRTQHDKNKEAISILDFGVIDDGVTDNYQAIQNAIDAVASLPSGGELFIPA 91
>pdb|2VBE|A Chain A, Tailspike Protein Of Bacteriophage Sf6
Length = 514
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 39 LPHSGSNGTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSA 94
LP + K+K I + DFG DG D+ +A NA S P+ ++ A
Sbjct: 36 LPKAVLRTQHDKNKEAISILDFGVIDDGVTDNYQAIQNAIDAVASLPSGGELFIPA 91
>pdb|3EQN|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQN|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQO|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
pdb|3EQO|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
Length = 758
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 61 GAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGT 120
GAKGDG DDT+A N + K + I F AG + I I P +++ E+
Sbjct: 407 GAKGDGHTDDTQAIKNVFAK---YAGCKIIFFDAGTYIVTDTIQI--PAGTQIVGEVWSV 461
Query: 121 IVA 123
I+
Sbjct: 462 IMG 464
>pdb|1OGM|X Chain X, Dex49a From Penicillium Minioluteum
pdb|1OGO|X Chain X, Dex49a From Penicillium Minioluteum Complex With
Isomaltose
Length = 574
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 162 WWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVI 221
WW S +INT P + + VQ + + + H +F N +
Sbjct: 16 WWHDSGEINTQTPVQPG----NVRQSHKYSVQ-VSLAGTNNFHDSFVYESIPRNGNGRIY 70
Query: 222 APAESPNTDGIHISASRGVEVKNSI 246
AP + PN++ + S G+ ++ SI
Sbjct: 71 APTDPPNSNTLDSSVDDGISIEPSI 95
>pdb|3TBF|A Chain A, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|B Chain B, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|C Chain C, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|D Chain D, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|E Chain E, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|F Chain F, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|G Chain G, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|H Chain H, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis
Length = 372
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 12/135 (8%)
Query: 250 GDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRI 309
G CI V NSSL+R + A G+ IG + ++ + ++ +I+ +N +
Sbjct: 131 GSXCICNVPNSSLVRESDIAFXTKAGVEIGVASTKAFTTQLVALAIFTLVIAKLKNSLTD 190
Query: 310 KTWQGGSGSATNIQFLDVLMKNVSNPI-IIDQYYCDSP----------VPCANQTSAVKV 358
+ + NI+ L + I I +Y+ D P A + A+K+
Sbjct: 191 QQIAKYTEELKNIRALVXGALKLDTEIDQISEYFSDKEHTIFLGRGLYYPIAIE-GALKL 249
Query: 359 ENITFIHIKGTSATE 373
+ I++IH + + E
Sbjct: 250 KEISYIHAEAYPSGE 264
>pdb|1DX4|A Chain A, Ache From Drosophila Melanogaster Complex With Tacrine
Derivative
9-(3-Phenylmethylamino)-1,2,3,4-Tetrahydroacridine
pdb|1QO9|A Chain A, Native Acetylcholinesterase From Drosophila Melanogaster
pdb|1QON|A Chain A, Ache From Drosophila Melanogaster Complex With Tacrine
Derivative
9-(3-Iodobenzylamino)-1,2,3,4-Tetrahydroacridine
Length = 585
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 12/104 (11%)
Query: 239 GVEVKNSIVGTGDDCISI-VGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYG 297
G E+ N +DC+ I V + R+R HG N D +++
Sbjct: 79 GEEIWNPNTNVSEDCLYINVWAPAKARLR-------HGRGANGGEHPNGKQADTDHLIHN 131
Query: 298 ALISNTQNGVRIKTWQGGSGSATNIQFLDV----LMKNVSNPII 337
NT NG+ I W G G T LD+ +M V N I+
Sbjct: 132 GNPQNTTNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIV 175
>pdb|4GIP|D Chain D, Structure Of The Cleavage-Activated Prefusion Form Of The
Parainfluenza Virus 5 (Piv5) Fusion Protein
pdb|4GIP|E Chain E, Structure Of The Cleavage-Activated Prefusion Form Of The
Parainfluenza Virus 5 (Piv5) Fusion Protein
pdb|4GIP|F Chain F, Structure Of The Cleavage-Activated Prefusion Form Of The
Parainfluenza Virus 5 (Piv5) Fusion Protein
Length = 409
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 174 PCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAE-SPNTDGI 232
P T I +KC +L++ NLR +Q ++ + + +++ S + I P + S N +
Sbjct: 295 PSSSPVTVIDMYKCVSLQLDNLRFTITQLANVTYNSTIKLESSQILSIDPLDISQNLAAV 354
Query: 233 HISASRGVE 241
+ S S ++
Sbjct: 355 NKSLSDALQ 363
>pdb|2B9B|A Chain A, Structure Of The Parainfluenza Virus 5 F Protein In Its
Metastable, Pre-Fusion Conformation
pdb|2B9B|B Chain B, Structure Of The Parainfluenza Virus 5 F Protein In Its
Metastable, Pre-Fusion Conformation
pdb|2B9B|C Chain C, Structure Of The Parainfluenza Virus 5 F Protein In Its
Metastable, Pre-Fusion Conformation
Length = 497
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 174 PCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAE-SPNTDGI 232
P T I +KC +L++ NLR +Q ++ + + +++ S + I P + S N +
Sbjct: 376 PSSSPVTVIDMYKCVSLQLDNLRFTITQLANVTYNSTIKLESSQILSIDPLDISQNLAAV 435
Query: 233 HISASRGVE 241
+ S S ++
Sbjct: 436 NKSLSDALQ 444
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,487,264
Number of Sequences: 62578
Number of extensions: 558369
Number of successful extensions: 1102
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1059
Number of HSP's gapped (non-prelim): 24
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)