Query 013309
Match_columns 445
No_of_seqs 289 out of 1851
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 02:32:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013309.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013309hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02793 Probable polygalactur 100.0 2.5E-84 5.5E-89 655.4 51.5 394 51-444 49-442 (443)
2 PLN02218 polygalacturonase ADP 100.0 6.8E-80 1.5E-84 620.3 47.4 370 47-425 60-431 (431)
3 PLN02155 polygalacturonase 100.0 1.6E-78 3.5E-83 603.8 47.0 371 49-426 22-393 (394)
4 PLN03003 Probable polygalactur 100.0 3.4E-78 7.4E-83 605.4 42.3 369 52-431 21-395 (456)
5 PLN03010 polygalacturonase 100.0 2.6E-77 5.7E-82 596.1 46.5 360 51-426 43-404 (409)
6 PLN02188 polygalacturonase/gly 100.0 5.1E-76 1.1E-80 588.4 43.6 372 47-425 29-404 (404)
7 PF00295 Glyco_hydro_28: Glyco 100.0 6.6E-58 1.4E-62 451.5 31.5 323 82-414 1-323 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 1.1E-42 2.3E-47 353.6 27.8 281 47-339 75-405 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 8.2E-26 1.8E-30 223.2 23.1 251 46-331 29-337 (455)
10 PF12708 Pectate_lyase_3: Pect 99.9 2E-20 4.4E-25 175.1 20.2 213 54-307 1-224 (225)
11 PLN02218 polygalacturonase ADP 99.8 3.7E-18 8.1E-23 172.8 29.0 224 180-428 148-419 (431)
12 PLN02793 Probable polygalactur 99.8 4E-18 8.7E-23 173.3 29.2 222 110-372 142-398 (443)
13 PLN03003 Probable polygalactur 99.8 5.8E-18 1.3E-22 170.9 30.0 233 180-438 105-385 (456)
14 PLN02188 polygalacturonase/gly 99.8 9.4E-18 2E-22 168.7 29.3 223 110-371 121-377 (404)
15 PF00295 Glyco_hydro_28: Glyco 99.8 7.3E-18 1.6E-22 166.7 26.4 219 111-370 60-310 (326)
16 PLN03010 polygalacturonase 99.8 7.6E-17 1.6E-21 161.9 31.8 224 180-428 131-390 (409)
17 PLN02155 polygalacturonase 99.8 3.9E-17 8.5E-22 163.6 29.5 232 180-436 107-386 (394)
18 PF03718 Glyco_hydro_49: Glyco 99.8 1.2E-16 2.5E-21 159.7 28.0 272 87-399 232-554 (582)
19 TIGR03805 beta_helix_1 paralle 99.7 2.3E-14 4.9E-19 140.6 27.7 196 74-332 1-203 (314)
20 COG5434 PGU1 Endopygalactoruna 99.2 4.1E-10 8.8E-15 116.0 15.7 154 201-372 237-399 (542)
21 TIGR03805 beta_helix_1 paralle 99.1 6.2E-08 1.3E-12 95.3 23.6 186 181-373 79-285 (314)
22 PRK10123 wcaM putative colanic 98.9 2.6E-07 5.7E-12 86.2 19.8 206 49-304 29-259 (464)
23 PF12541 DUF3737: Protein of u 98.6 4.9E-07 1.1E-11 83.8 13.0 124 183-334 93-227 (277)
24 TIGR03808 RR_plus_rpt_1 twin-a 98.6 1.9E-06 4.1E-11 86.4 17.3 146 181-339 108-291 (455)
25 PF13229 Beta_helix: Right han 98.6 5.3E-07 1.1E-11 78.9 11.6 138 182-338 3-144 (158)
26 PF03718 Glyco_hydro_49: Glyco 98.5 6.1E-05 1.3E-09 76.7 25.7 246 87-370 256-553 (582)
27 COG3866 PelB Pectate lyase [Ca 98.5 4.8E-06 1E-10 78.6 15.9 123 182-304 95-230 (345)
28 smart00656 Amb_all Amb_all dom 98.5 7.7E-06 1.7E-10 74.6 16.9 100 203-303 32-144 (190)
29 PF05048 NosD: Periplasmic cop 98.4 2.2E-05 4.8E-10 74.2 16.8 134 181-337 15-150 (236)
30 PF07602 DUF1565: Protein of u 98.3 0.00015 3.1E-09 68.3 21.4 40 72-119 16-60 (246)
31 PF05048 NosD: Periplasmic cop 98.3 2.1E-05 4.7E-10 74.3 16.2 114 181-310 37-152 (236)
32 PF13229 Beta_helix: Right han 98.3 8.9E-06 1.9E-10 71.0 12.4 129 181-328 25-157 (158)
33 COG3866 PelB Pectate lyase [Ca 98.3 0.00013 2.8E-09 69.1 20.3 177 113-336 77-280 (345)
34 PF12541 DUF3737: Protein of u 98.3 6.2E-05 1.3E-09 70.1 17.4 31 358-397 193-223 (277)
35 PF14592 Chondroitinas_B: Chon 98.3 0.0002 4.3E-09 72.0 22.1 32 70-105 3-34 (425)
36 COG3420 NosD Nitrous oxidase a 98.1 0.00094 2E-08 64.3 21.9 86 185-272 104-192 (408)
37 PLN02480 Probable pectinestera 98.0 0.0019 4.1E-08 64.0 22.6 131 184-331 128-276 (343)
38 PLN02634 probable pectinestera 98.0 0.0027 5.8E-08 63.0 23.2 47 70-119 67-114 (359)
39 PF00544 Pec_lyase_C: Pectate 98.0 8.4E-05 1.8E-09 68.4 11.5 94 209-303 44-158 (200)
40 smart00656 Amb_all Amb_all dom 97.9 0.00056 1.2E-08 62.4 15.9 119 181-309 33-173 (190)
41 PLN02682 pectinesterase family 97.9 0.0024 5.3E-08 63.5 21.5 48 69-119 80-128 (369)
42 PF12708 Pectate_lyase_3: Pect 97.9 0.00092 2E-08 62.1 17.3 123 190-336 94-224 (225)
43 PLN02176 putative pectinestera 97.9 0.0078 1.7E-07 59.5 23.5 47 70-119 50-97 (340)
44 PLN02497 probable pectinestera 97.8 0.0024 5.1E-08 62.9 19.2 46 70-119 43-90 (331)
45 PRK10531 acyl-CoA thioesterase 97.7 0.0067 1.4E-07 61.3 20.8 115 182-303 200-336 (422)
46 PLN02665 pectinesterase family 97.5 0.024 5.1E-07 56.7 21.8 135 182-331 148-297 (366)
47 PLN02671 pectinesterase 97.5 0.018 4E-07 57.2 20.6 47 70-119 70-117 (359)
48 PF01696 Adeno_E1B_55K: Adenov 97.5 0.013 2.8E-07 58.3 19.2 160 54-277 43-205 (386)
49 PLN02773 pectinesterase 97.4 0.025 5.3E-07 55.5 20.2 80 183-271 97-181 (317)
50 PLN02708 Probable pectinestera 97.4 0.019 4.1E-07 60.7 20.3 47 70-119 252-300 (553)
51 PLN02170 probable pectinestera 97.4 0.03 6.4E-07 58.4 21.1 205 69-331 235-451 (529)
52 PLN02304 probable pectinestera 97.3 0.034 7.4E-07 55.6 20.1 47 70-119 86-133 (379)
53 PLN02506 putative pectinestera 97.3 0.027 5.8E-07 59.2 19.5 205 70-331 243-458 (537)
54 PLN02995 Probable pectinestera 97.3 0.028 6E-07 59.2 19.4 210 69-332 233-461 (539)
55 PLN02432 putative pectinestera 97.2 0.072 1.6E-06 51.7 20.5 46 70-118 22-68 (293)
56 PLN02468 putative pectinestera 97.2 0.03 6.4E-07 59.4 19.1 206 70-331 269-489 (565)
57 PLN02933 Probable pectinestera 97.2 0.066 1.4E-06 56.0 21.3 149 70-271 229-384 (530)
58 PLN02201 probable pectinestera 97.2 0.055 1.2E-06 56.6 20.2 208 69-332 216-442 (520)
59 PLN02745 Putative pectinestera 97.1 0.058 1.3E-06 57.5 20.5 206 70-331 296-520 (596)
60 PLN02197 pectinesterase 97.1 0.056 1.2E-06 57.4 20.1 210 70-332 286-514 (588)
61 PLN02484 probable pectinestera 97.1 0.063 1.4E-06 57.1 20.5 208 70-332 283-509 (587)
62 PF01095 Pectinesterase: Pecti 97.1 0.021 4.5E-07 55.9 15.8 48 69-119 10-58 (298)
63 PLN02916 pectinesterase family 97.1 0.05 1.1E-06 56.5 19.2 149 70-271 198-356 (502)
64 PLN02713 Probable pectinestera 97.1 0.04 8.7E-07 58.4 18.8 207 70-332 261-489 (566)
65 PF00544 Pec_lyase_C: Pectate 97.1 0.0069 1.5E-07 55.7 11.2 119 182-310 39-188 (200)
66 PLN02416 probable pectinestera 97.1 0.054 1.2E-06 57.1 19.1 208 70-331 241-465 (541)
67 PF12218 End_N_terminal: N ter 97.0 0.00067 1.5E-08 48.4 3.3 39 62-104 1-39 (67)
68 PLN02217 probable pectinestera 97.0 0.056 1.2E-06 58.1 19.2 209 70-332 261-486 (670)
69 PLN02488 probable pectinestera 97.0 0.1 2.2E-06 54.0 20.2 151 68-271 206-363 (509)
70 PLN02314 pectinesterase 97.0 0.072 1.6E-06 56.8 19.6 207 70-332 289-509 (586)
71 PLN02301 pectinesterase/pectin 97.0 0.076 1.6E-06 56.0 19.3 206 70-331 247-471 (548)
72 PLN03043 Probable pectinestera 96.9 0.079 1.7E-06 55.9 18.4 207 69-331 233-461 (538)
73 PLN02313 Pectinesterase/pectin 96.8 0.1 2.3E-06 55.6 18.8 181 70-304 286-478 (587)
74 PLN02990 Probable pectinestera 96.7 0.25 5.3E-06 52.6 20.9 209 70-331 270-495 (572)
75 PRK10123 wcaM putative colanic 96.3 0.4 8.8E-06 45.6 17.3 19 87-105 71-90 (464)
76 PF03211 Pectate_lyase: Pectat 96.1 0.27 5.9E-06 45.3 14.6 127 212-365 62-194 (215)
77 PF03211 Pectate_lyase: Pectat 95.6 1.3 2.9E-05 40.8 16.8 137 181-326 56-194 (215)
78 COG3420 NosD Nitrous oxidase a 95.4 0.31 6.8E-06 47.4 12.7 63 181-248 122-191 (408)
79 COG4677 PemB Pectin methyleste 95.1 0.65 1.4E-05 45.0 13.6 47 69-118 92-140 (405)
80 PF14592 Chondroitinas_B: Chon 92.7 2.1 4.6E-05 43.5 12.9 113 187-303 66-211 (425)
81 TIGR03804 para_beta_helix para 92.7 0.2 4.2E-06 33.8 3.9 28 231-258 1-28 (44)
82 TIGR03804 para_beta_helix para 92.2 0.25 5.5E-06 33.2 4.0 40 205-249 2-41 (44)
83 PF01696 Adeno_E1B_55K: Adenov 91.7 16 0.00035 36.8 22.3 181 207-428 117-306 (386)
84 PLN02480 Probable pectinestera 91.0 9.3 0.0002 38.1 15.1 111 208-332 129-252 (343)
85 PRK10531 acyl-CoA thioesterase 86.1 33 0.00071 35.2 15.3 117 207-333 202-337 (422)
86 PLN02665 pectinesterase family 84.5 22 0.00047 35.8 13.1 119 208-338 151-278 (366)
87 PF09251 PhageP22-tail: Salmon 84.1 17 0.00037 36.8 11.8 81 237-332 263-367 (549)
88 PLN02170 probable pectinestera 83.7 30 0.00065 36.6 14.2 114 207-333 309-428 (529)
89 PLN02506 putative pectinestera 82.8 17 0.00036 38.7 12.0 112 207-331 315-433 (537)
90 PLN02176 putative pectinestera 82.5 23 0.0005 35.3 12.3 16 185-200 119-134 (340)
91 PLN02698 Probable pectinestera 82.4 22 0.00049 37.3 12.7 78 185-271 267-349 (497)
92 PLN02773 pectinesterase 81.6 42 0.0009 33.2 13.6 111 209-333 100-213 (317)
93 PLN02197 pectinesterase 80.7 24 0.00053 37.8 12.4 113 208-332 361-480 (588)
94 PLN02201 probable pectinestera 79.9 37 0.0008 35.9 13.3 112 208-332 290-408 (520)
95 PLN02416 probable pectinestera 79.8 24 0.00053 37.5 12.1 112 209-332 315-432 (541)
96 PLN02217 probable pectinestera 79.5 21 0.00047 38.8 11.6 111 209-332 335-452 (670)
97 PLN02468 putative pectinestera 79.3 27 0.00059 37.4 12.3 112 208-332 342-460 (565)
98 PLN02745 Putative pectinestera 79.3 33 0.00072 36.9 13.0 111 209-332 370-487 (596)
99 PLN02313 Pectinesterase/pectin 78.9 30 0.00064 37.3 12.5 112 209-332 360-477 (587)
100 PLN02314 pectinesterase 78.6 28 0.0006 37.5 12.2 113 209-333 363-481 (586)
101 PLN02432 putative pectinestera 78.4 43 0.00092 32.7 12.4 18 184-201 90-107 (293)
102 PLN03043 Probable pectinestera 78.1 38 0.00082 36.1 12.9 112 208-332 310-428 (538)
103 PLN02995 Probable pectinestera 77.5 29 0.00064 36.9 11.8 111 209-332 310-427 (539)
104 PLN02484 probable pectinestera 77.3 33 0.00071 36.9 12.2 111 209-332 358-475 (587)
105 PLN02671 pectinesterase 76.8 49 0.0011 33.3 12.5 18 183-200 149-166 (359)
106 PLN02304 probable pectinestera 76.0 65 0.0014 32.6 13.2 18 183-200 157-174 (379)
107 PLN02698 Probable pectinestera 74.9 73 0.0016 33.6 13.8 114 208-333 267-386 (497)
108 PF09251 PhageP22-tail: Salmon 74.0 10 0.00022 38.3 6.8 74 260-339 263-353 (549)
109 PLN02916 pectinesterase family 73.3 98 0.0021 32.6 14.1 112 208-332 274-392 (502)
110 PF08480 Disaggr_assoc: Disagg 73.1 72 0.0016 28.8 12.3 93 238-334 34-145 (198)
111 PLN02713 Probable pectinestera 73.0 74 0.0016 34.1 13.5 112 208-332 337-455 (566)
112 PLN02682 pectinesterase family 64.4 1.7E+02 0.0036 29.6 13.8 136 181-332 156-305 (369)
113 PLN02488 probable pectinestera 63.5 2E+02 0.0044 30.3 14.4 112 209-333 282-400 (509)
114 PF07602 DUF1565: Protein of u 59.1 41 0.0009 31.9 7.5 94 180-278 89-194 (246)
115 PF08480 Disaggr_assoc: Disagg 57.8 1.5E+02 0.0032 26.9 13.6 62 239-305 3-78 (198)
116 PF01095 Pectinesterase: Pecti 47.7 1.2E+02 0.0025 29.8 8.9 78 184-271 83-166 (298)
117 smart00710 PbH1 Parallel beta- 46.1 22 0.00048 19.7 2.3 19 292-310 3-22 (26)
118 PF07172 GRP: Glycine rich pro 45.9 20 0.00044 28.6 2.7 13 1-13 1-13 (95)
119 PLN02497 probable pectinestera 43.9 3.4E+02 0.0074 27.0 16.3 79 184-271 111-201 (331)
120 PLN02634 probable pectinestera 43.2 3.6E+02 0.0079 27.1 12.4 79 184-271 145-233 (359)
121 COG3054 Predicted transcriptio 40.4 25 0.00054 30.5 2.5 12 92-104 89-100 (184)
122 PLN02708 Probable pectinestera 40.3 3.6E+02 0.0079 28.9 11.8 78 184-270 326-408 (553)
123 smart00722 CASH Domain present 39.5 1E+02 0.0022 25.5 6.4 68 185-255 73-144 (146)
124 PLN02933 Probable pectinestera 39.2 5E+02 0.011 27.7 12.5 113 207-332 301-420 (530)
125 PLN02301 pectinesterase/pectin 34.1 2.8E+02 0.006 29.7 9.7 113 207-332 319-438 (548)
126 COG4677 PemB Pectin methyleste 34.1 94 0.002 30.6 5.6 14 187-200 188-201 (405)
127 PRK15221 Saf-pilin pilus forma 32.8 1.8E+02 0.0038 25.6 6.5 13 152-164 120-132 (165)
128 PLN02990 Probable pectinestera 32.1 6.8E+02 0.015 27.0 12.9 110 210-332 346-462 (572)
129 KOG1777 Putative Zn-finger pro 28.3 95 0.0021 31.8 4.8 28 231-258 420-447 (625)
130 smart00722 CASH Domain present 27.3 3.5E+02 0.0075 22.1 9.1 13 187-199 44-56 (146)
No 1
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=2.5e-84 Score=655.40 Aligned_cols=394 Identities=75% Similarity=1.250 Sum_probs=368.7
Q ss_pred CCeeEEeecccccCCCCCccHHHHHHHHHHHcCCCCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCcCCc
Q 013309 51 SKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVW 130 (445)
Q Consensus 51 ~~~~~~v~dfGa~gdg~tDdT~Aiq~Ai~~a~~~~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~ 130 (445)
.++++||+||||+|||.+|||+|||+||++||+..+|++|+||+|++|++++|.|+||||++++|+++|+|+++.++..|
T Consensus 49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~g~l~~~~d~~~w 128 (443)
T PLN02793 49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGTIIAPKDPDVW 128 (443)
T ss_pred CceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCCCeEEEEEEEEEccCChHHc
Confidence 45899999999999999999999999999889888889999999966999999999999999999999999999999999
Q ss_pred CCCCccccEEEeceeeEEEEeceEEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCCceeEEEce
Q 013309 131 KGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNC 210 (445)
Q Consensus 131 ~~~~~~~~i~~~~~~nv~I~G~G~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~ 210 (445)
++...+.|+++.+++|++|+|.|+|||+|+.||...++.+...++..||++|.|.+|+|++|++++++|||.|++++..|
T Consensus 129 ~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~~~ 208 (443)
T PLN02793 129 KGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNC 208 (443)
T ss_pred cCCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEEcc
Confidence 87777789999999999999999999999999986554444556677999999999999999999999999999999999
Q ss_pred ecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCCCccE
Q 013309 211 LRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRI 290 (445)
Q Consensus 211 ~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~~~~v 290 (445)
++++|++++|.++..++|+||||+.+|+||+|+||+|+++||||+++++++||+|+||+|..+|||+|||+|++++.+.|
T Consensus 209 ~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~~V 288 (443)
T PLN02793 209 RRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEV 288 (443)
T ss_pred CcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCCcE
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999988888899
Q ss_pred EeEEEEcEEEeCCcceEEEEEecCCCceeeeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCcceEEEEEEEeEEEEc
Q 013309 291 HDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTS 370 (445)
Q Consensus 291 ~nv~i~n~~~~~~~~gi~i~~~~g~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~f~ni~~~~ 370 (445)
+||+|+||+|.++.+|++||+|+|+.|.|+||+|+||+|+++.+||.|++.|++...+|.+.++.+.|+||+|+||+++.
T Consensus 289 ~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~ 368 (443)
T PLN02793 289 RDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTS 368 (443)
T ss_pred EEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999998877788777788999999999999998
Q ss_pred cCcceEEEEecCCCCeeCeEEEeEEEEecCCCccceeeeeeeecccceecCCCccCCCCCcccccCCCcccccC
Q 013309 371 ATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVEPPPCFACSEGLIQQKAPSNLAFQS 444 (445)
Q Consensus 371 ~~~~~~~i~~~~~~~~~~i~~~nv~i~~~~~~~~~~~c~n~~~~~~~~~~p~~c~~~~~~~~~~~~~~~~~~~~ 444 (445)
..+.++.+.|+++.||+||+|+||+++...++.....|+|++|...|.+.|++|+..+.|+..|+.++-+..+.
T Consensus 369 ~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~~~~~p~~C~~~~~~~~~~~~~~~~~~~~ 442 (443)
T PLN02793 369 ATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSSGQVYPPPCFSDSTSFIKQKVQSGSTSFF 442 (443)
T ss_pred cccccEEEEeCCCCCEeeEEEEeeEEEecCCCCCCcEEEccEEeECCeEcCCccccCCCcccccccCCcceeec
Confidence 76668999999999999999999999988776677899999999999999999999999999999998766543
No 2
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=6.8e-80 Score=620.31 Aligned_cols=370 Identities=49% Similarity=0.887 Sum_probs=341.1
Q ss_pred CCCCCCeeEEeecccccCCCCCccHHHHHHHHHHHcCCCCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCC
Q 013309 47 TRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKD 126 (445)
Q Consensus 47 ~~~~~~~~~~v~dfGa~gdg~tDdT~Aiq~Ai~~a~~~~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~ 126 (445)
...++++++||+||||+|||++|||+|||+||++||+..|+++|+||+|++|++++|.|+|||+++++|+++|+|+++++
T Consensus 60 ~~~~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l~g~L~~s~d 139 (431)
T PLN02218 60 ASLRTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQIFGTLSASQK 139 (431)
T ss_pred cccCCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCccCCceEEEEEEEEEeCCC
Confidence 44556889999999999999999999999999878988888899999997799999999999999999999999999999
Q ss_pred cCCcCCCCccccEEEeceeeEEEEec--eEEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCCce
Q 013309 127 PDVWKGLNRRRWLYFNRVNHLTVQGG--GTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMH 204 (445)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~~nv~I~G~--G~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~ 204 (445)
+.+|+. ...|+.+.+++|++|+|. |+|||+|+.||...++.++..++..||+++.|.+|+|++|+|++++|||.|+
T Consensus 140 ~~~y~~--~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w~ 217 (431)
T PLN02218 140 RSDYKD--ISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQ 217 (431)
T ss_pred hhhccc--cccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCEE
Confidence 998863 357999999999999996 9999999999987665455556778999999999999999999999999999
Q ss_pred eEEEceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCc
Q 013309 205 IAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKS 284 (445)
Q Consensus 205 i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~ 284 (445)
+++..|+||+|+|++|.++.+++|+||||+.+|+||+|+||+|.+|||||+++++++||+|+||+|..+||++|||+|.+
T Consensus 218 i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~~ 297 (431)
T PLN02218 218 ISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDD 297 (431)
T ss_pred EEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCCC
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCccEEeEEEEcEEEeCCcceEEEEEecCCCceeeeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCcceEEEEEEE
Q 013309 285 NSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFI 364 (445)
Q Consensus 285 ~~~~~v~nv~i~n~~~~~~~~gi~i~~~~g~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~f~ 364 (445)
...+.|+||+|+||++.++.+|+|||+|+|++|.|+||+|+||+|+++++||.|++.|++.. .|..+++...|+||+|+
T Consensus 298 ~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~-~~~~~~s~v~I~nI~~~ 376 (431)
T PLN02218 298 NSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKS-KCTSQQSAVQVKNVVYR 376 (431)
T ss_pred CCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEEEcccccEEEEeeccCCC-CCCCCCCCeEEEEEEEE
Confidence 66789999999999999999999999999999999999999999999999999999998754 36666677899999999
Q ss_pred eEEEEccCcceEEEEecCCCCeeCeEEEeEEEEecCCCccceeeeeeeecccceecCCCcc
Q 013309 365 HIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVEPPPCF 425 (445)
Q Consensus 365 ni~~~~~~~~~~~i~~~~~~~~~~i~~~nv~i~~~~~~~~~~~c~n~~~~~~~~~~p~~c~ 425 (445)
||+++.+...++.+.|+++.||+||+|+||+++.. ...|+||.+...|.+.| .|.
T Consensus 377 NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~-----~~~c~n~~~~~~~~~~p-~c~ 431 (431)
T PLN02218 377 NISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG-----KATCTNANVVDKGAVSP-QCN 431 (431)
T ss_pred eEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC-----eeeEEEeeEEEcccCCC-CCC
Confidence 99999876668999999999999999999999742 45799999999998776 584
No 3
>PLN02155 polygalacturonase
Probab=100.00 E-value=1.6e-78 Score=603.78 Aligned_cols=371 Identities=41% Similarity=0.787 Sum_probs=338.0
Q ss_pred CCCCeeEEeecccccCCCCCccHHHHHHHHHHHcCCCCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCcC
Q 013309 49 SKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPD 128 (445)
Q Consensus 49 ~~~~~~~~v~dfGa~gdg~tDdT~Aiq~Ai~~a~~~~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~~ 128 (445)
...++++||+||||+|||++|||+|||+||++||+..||++|+||+| +|++++|.|+|||||+++|+++|+|+++.++.
T Consensus 22 ~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G-~yl~g~i~l~gpcksnv~l~l~G~l~~~~d~~ 100 (394)
T PLN02155 22 SSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTG-TFLLKVITFGGPCKSKITFQVAGTVVAPEDYR 100 (394)
T ss_pred ccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCC-cEEEEEEEEcccCCCCceEEEeeEEECccccc
Confidence 34467999999999999999999999999976898888899999999 99999999999999999999999999988887
Q ss_pred CcCCCCccccEEEeceeeEEEEeceEEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCCceeEEE
Q 013309 129 VWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFT 208 (445)
Q Consensus 129 ~~~~~~~~~~i~~~~~~nv~I~G~G~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~ 208 (445)
.|.. ...|+.+.+++|+.|.| |+|||+|+.||..... ...+..+|+++.|.+|+|++|++++++|||.|++++.
T Consensus 101 ~~~~--~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~~---~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~~~ 174 (394)
T PLN02155 101 TFGN--SGYWILFNKVNRFSLVG-GTFDARANGFWSCRKS---GQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLN 174 (394)
T ss_pred cccc--cceeEEEECcCCCEEEc-cEEecCceeEEEcccC---CCCCCCcccceeEEEeeeEEEECeEEEcCCCeEEEEE
Confidence 7742 23689999999999999 9999999999973211 1223457889999999999999999999999999999
Q ss_pred ceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCCCc
Q 013309 209 NCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSV 288 (445)
Q Consensus 209 ~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~~~ 288 (445)
.|++++|++++|.++.+++|+||||+.+|+||+|+||+|.+|||||+++++++||+|+||+|..+||++|||+|+....+
T Consensus 175 ~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~~~ 254 (394)
T PLN02155 175 GCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNED 254 (394)
T ss_pred CeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCCCC
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999998765678
Q ss_pred cEEeEEEEcEEEeCCcceEEEEEecC-CCceeeeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCcceEEEEEEEeEE
Q 013309 289 RIHDIMVYGALISNTQNGVRIKTWQG-GSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIK 367 (445)
Q Consensus 289 ~v~nv~i~n~~~~~~~~gi~i~~~~g-~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~f~ni~ 367 (445)
.|+||+|+||+|.++.+|++||+|.+ ++|.|+||+|+||+|++++.||.|++.|++....|++..+...|+||+|+||+
T Consensus 255 ~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~ 334 (394)
T PLN02155 255 GVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQ 334 (394)
T ss_pred cEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeE
Confidence 99999999999999999999999865 67999999999999999999999999998765456655667899999999999
Q ss_pred EEccCcceEEEEecCCCCeeCeEEEeEEEEecCCCccceeeeeeeecccceecCCCccC
Q 013309 368 GTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVEPPPCFA 426 (445)
Q Consensus 368 ~~~~~~~~~~i~~~~~~~~~~i~~~nv~i~~~~~~~~~~~c~n~~~~~~~~~~p~~c~~ 426 (445)
++.....++++.|+++.||+||+|+||+++...++++.+.|+||+|...|.+.|.+|++
T Consensus 335 gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~~ 393 (394)
T PLN02155 335 GTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCLN 393 (394)
T ss_pred EEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCcccccC
Confidence 99887679999999999999999999999998777778999999999889888888975
No 4
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=3.4e-78 Score=605.44 Aligned_cols=369 Identities=40% Similarity=0.780 Sum_probs=335.8
Q ss_pred CeeEEeecccccCCCCCccHHHHHHHHHHHcCCCCCcEEEEcCCcEEEeeeeeecCCCCCC-eeEeEeeEEECCCCcCCc
Q 013309 52 KRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSR-LTLEISGTIVAPKDPDVW 130 (445)
Q Consensus 52 ~~~~~v~dfGa~gdg~tDdT~Aiq~Ai~~a~~~~gg~~v~~P~G~~Yl~~~l~l~~~~~s~-v~l~~~G~i~~~~~~~~~ 130 (445)
+.++||++|||+|||++|||+|||+||++||+..++++|+||+|++|++++|.|+|||++. ++++++|+++++.. ..|
T Consensus 21 ~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~-~~w 99 (456)
T PLN03003 21 SNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSK-GNW 99 (456)
T ss_pred eeEEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCcc-ccc
Confidence 5689999999999999999999999999889887789999999977999999999999874 88889999998654 467
Q ss_pred CCCCccccEEEeceeeEEEEeceEEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCCceeEEEce
Q 013309 131 KGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNC 210 (445)
Q Consensus 131 ~~~~~~~~i~~~~~~nv~I~G~G~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~ 210 (445)
.+ ....||++.+++|++|+|.|+|||+|+.||... ..||+++.|.+|+|++|+|++++|||.|++++..|
T Consensus 100 ~~-~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~---------~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~c 169 (456)
T PLN03003 100 KG-DKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK---------GSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISEC 169 (456)
T ss_pred cC-CCcceEEEEcccceEEeccceEeCCchhhhhcc---------cCCceEEEEEecCCcEEeCeEEecCCcEEEEEecc
Confidence 64 335799999999999999999999999999742 46999999999999999999999999999999999
Q ss_pred ecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCCCccE
Q 013309 211 LRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRI 290 (445)
Q Consensus 211 ~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~~~~v 290 (445)
++++|++++|.++.+++|+||||+.+|+||+|+||+|.+|||||+++++++||+|+||+|..+|||+|||+|.+...+.|
T Consensus 170 ~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~~~V 249 (456)
T PLN03003 170 NYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATV 249 (456)
T ss_pred ccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCcceE
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999876666789
Q ss_pred EeEEEEcEEEeCCcceEEEEEecCCCceeeeEEEEeEEEecCCccEEEEeeeCCCCC--CCCCCCCcceEEEEEEEeEEE
Q 013309 291 HDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPV--PCANQTSAVKVENITFIHIKG 368 (445)
Q Consensus 291 ~nv~i~n~~~~~~~~gi~i~~~~g~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~~--~~~~~~~~~~i~ni~f~ni~~ 368 (445)
+||+|+||+|.++.+|+|||+|+|+.|.++||+|+||+|+++.+||.|++.|++... .|...++...|+||+|+||++
T Consensus 250 ~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~G 329 (456)
T PLN03003 250 ENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIG 329 (456)
T ss_pred EEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEEE
Confidence 999999999999999999999999999999999999999999999999999986432 244456678999999999999
Q ss_pred EccCcceEEEEecCCCCeeCeEEEeEEEEecC---CCccceeeeeeeecccceecCCCccCCCCCc
Q 013309 369 TSATEEAIKFACSDDSPCEGLFLEDVQLVSHS---GGIAKSFCWEAYGSSVGQVEPPPCFACSEGL 431 (445)
Q Consensus 369 ~~~~~~~~~i~~~~~~~~~~i~~~nv~i~~~~---~~~~~~~c~n~~~~~~~~~~p~~c~~~~~~~ 431 (445)
+.....++.+.|++..||+||+|+||+++... ++++.+.|+||.|...+...|++|+.....+
T Consensus 330 Ts~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~~~~~~~ 395 (456)
T PLN03003 330 TSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLELSTDM 395 (456)
T ss_pred EeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCccccCCCc
Confidence 98877799999999999999999999998763 2347899999999988877777899876444
No 5
>PLN03010 polygalacturonase
Probab=100.00 E-value=2.6e-77 Score=596.13 Aligned_cols=360 Identities=38% Similarity=0.734 Sum_probs=337.0
Q ss_pred CCeeEEeecccccCCCCCccHHHHHHHHHHHcCCCC-CcEEEEcCCcEEEeeeeeecCCCC-CCeeEeEeeEEECCCCcC
Q 013309 51 SKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPA-RTKIVFSAGYTFLIHPIDISGPCK-SRLTLEISGTIVAPKDPD 128 (445)
Q Consensus 51 ~~~~~~v~dfGa~gdg~tDdT~Aiq~Ai~~a~~~~g-g~~v~~P~G~~Yl~~~l~l~~~~~-s~v~l~~~G~i~~~~~~~ 128 (445)
.++++||+||||+|||++|||+|||+||++||...+ +++|+||+|++|++++|.|++||+ ++++|+++|+|+++.++.
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~~ 122 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNIV 122 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCChh
Confidence 567899999999999999999999999997786432 379999999789999999999997 589999999999999999
Q ss_pred CcCCCCccccEEEeceeeEEEEeceEEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCCceeEEE
Q 013309 129 VWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFT 208 (445)
Q Consensus 129 ~~~~~~~~~~i~~~~~~nv~I~G~G~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~ 208 (445)
.|+......|+.+.+++|++|+|.|+|||+|+.||. ++.|.+|+|++|++++++|+|.|++++.
T Consensus 123 ~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~----------------~l~~~~~~nv~v~gitl~nsp~~~i~i~ 186 (409)
T PLN03010 123 AWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE----------------ALHISKCDNLTINGITSIDSPKNHISIK 186 (409)
T ss_pred hccCCCCcceEEEecccccEEeeceEEeCCCccccc----------------eEEEEeecCeEEeeeEEEcCCceEEEEe
Confidence 997655567999999999999999999999999996 4899999999999999999999999999
Q ss_pred ceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCCCc
Q 013309 209 NCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSV 288 (445)
Q Consensus 209 ~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~~~ 288 (445)
.|++++|++++|.++..++|+||||+.+|+||+|+||+|.++||||++|+++.|+.|+++.|..+|||+|||+|......
T Consensus 187 ~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~~ 266 (409)
T PLN03010 187 TCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANA 266 (409)
T ss_pred ccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCCC
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999998766667
Q ss_pred cEEeEEEEcEEEeCCcceEEEEEecCCCceeeeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCcceEEEEEEEeEEE
Q 013309 289 RIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKG 368 (445)
Q Consensus 289 ~v~nv~i~n~~~~~~~~gi~i~~~~g~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~f~ni~~ 368 (445)
.|+||+|+||+|.++.+|+|||+|+|+.|.|+||+|+||+|+++++||.|++.|++...+|..+++...|+||+|+||++
T Consensus 267 ~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~G 346 (409)
T PLN03010 267 KVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRG 346 (409)
T ss_pred eeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEE
Confidence 89999999999999999999999999999999999999999999999999999998777787778899999999999999
Q ss_pred EccCcceEEEEecCCCCeeCeEEEeEEEEecCCCccceeeeeeeecccceecCCCccC
Q 013309 369 TSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVEPPPCFA 426 (445)
Q Consensus 369 ~~~~~~~~~i~~~~~~~~~~i~~~nv~i~~~~~~~~~~~c~n~~~~~~~~~~p~~c~~ 426 (445)
+.....++.|.|++..||+||+|+||+++...++.+...|.|+.+...|...|++|++
T Consensus 347 T~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~~~~~C~nv~g~~~~~~~~~~C~~ 404 (409)
T PLN03010 347 TTSNENAITLKCSAITHCKDVVMDDIDVTMENGEKPKVECQNVEGESSDTDLMRDCFK 404 (409)
T ss_pred EeCCCccEEEEeCCCCCEeceEEEEEEEEecCCCccceEeeCccccccCCCCCCcccc
Confidence 9887779999999999999999999999988777788999999999889999999984
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=5.1e-76 Score=588.43 Aligned_cols=372 Identities=39% Similarity=0.721 Sum_probs=332.9
Q ss_pred CCCCCCeeEEeecccccCCCCCccHHHHHHHHHHHcCCCCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCC
Q 013309 47 TRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKD 126 (445)
Q Consensus 47 ~~~~~~~~~~v~dfGa~gdg~tDdT~Aiq~Ai~~a~~~~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~ 126 (445)
.....+.++||+||||+|||.+|||+|||+||++||+..|+++|+||+| +|++++|.|+|||++...|.+ +|+++++
T Consensus 29 ~~~~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G-~yl~g~i~lkgpc~~~s~v~l--~L~~s~d 105 (404)
T PLN02188 29 VKGSSTFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPG-TYYIGPVQFHGPCTNVSSLTF--TLKAATD 105 (404)
T ss_pred cccCCceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCC-eEEEEeEEeCCCcCcceeEEE--EEEcCCC
Confidence 3344568999999999999999999999999987898888899999999 999999999999976544444 8999999
Q ss_pred cCCcCCCCccccEEEeceeeEEEEeceEEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCCceeE
Q 013309 127 PDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIA 206 (445)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~~nv~I~G~G~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~ 206 (445)
+++|.. ...|+.+..++|++|+|.|+|||+|+.||+.... .....+..||++|.|.+|+|++|++++++|||.|+++
T Consensus 106 ~~~y~~--~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~-~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~ 182 (404)
T PLN02188 106 LSRYGS--GNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKC-PIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIA 182 (404)
T ss_pred HHHCCC--ccceEEEeceeeEEEEeeEEEeCCCccccccccc-ccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCCeEEE
Confidence 999974 3468888889999999999999999999974211 1112346799999999999999999999999999999
Q ss_pred EEceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCC
Q 013309 207 FTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNS 286 (445)
Q Consensus 207 ~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~ 286 (445)
+..|++++|++++|.++.+++|+||||+.+|+||+|+||+|.++||||+++++++||+|+|+.|..+||++|||+|++++
T Consensus 183 ~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~ 262 (404)
T PLN02188 183 LVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPN 262 (404)
T ss_pred EEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCc
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999998888
Q ss_pred CccEEeEEEEcEEEeCCcceEEEEEecC--CCceeeeEEEEeEEEecCCccEEEEeeeCCCCCCCC-CCCCcceEEEEEE
Q 013309 287 SVRIHDIMVYGALISNTQNGVRIKTWQG--GSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCA-NQTSAVKVENITF 363 (445)
Q Consensus 287 ~~~v~nv~i~n~~~~~~~~gi~i~~~~g--~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~~i~ni~f 363 (445)
.+.|+||+|+||+|.++.+|++||+|++ +.|.++||+|+||+|+++..||.|++.|++... |. ..++.+.|+||+|
T Consensus 263 ~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~-~~~~~~s~v~I~nIt~ 341 (404)
T PLN02188 263 EGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYS-CESKYPSGVTLSDIYF 341 (404)
T ss_pred CCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCC-CCcCCCCCcEEEeEEE
Confidence 8899999999999999999999999976 358999999999999999999999999986543 32 2345689999999
Q ss_pred EeEEEEccCcceEEEEecCCCCeeCeEEEeEEEEecCCC-ccceeeeeeeecccceecCCCcc
Q 013309 364 IHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGG-IAKSFCWEAYGSSVGQVEPPPCF 425 (445)
Q Consensus 364 ~ni~~~~~~~~~~~i~~~~~~~~~~i~~~nv~i~~~~~~-~~~~~c~n~~~~~~~~~~p~~c~ 425 (445)
+||+++.....++.+.|+++.||+||+|+||+++...++ ...+.|+|++|...|.+.|++|+
T Consensus 342 ~nI~gt~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 342 KNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPCP 404 (404)
T ss_pred EEEEEEecCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCCCCC
Confidence 999999876668999999999999999999999987553 46799999999999999999995
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=6.6e-58 Score=451.49 Aligned_cols=323 Identities=40% Similarity=0.681 Sum_probs=279.0
Q ss_pred cCCCCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCcCCcCCCCccccEEEeceeeEEEEeceEEecCCch
Q 013309 82 CSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQE 161 (445)
Q Consensus 82 ~~~~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~IDG~G~~ 161 (445)
|++.++++|+||+| +|+++++.|++++.+++++.++|++.++.....|. . ..||++.+++|++|+|.|+|||+|+.
T Consensus 1 C~~~~~~~v~vP~g-~~~~~~~~l~~~l~~~~~~~l~G~~~~~~~~~~~~--~-~~~i~~~~~~ni~i~G~G~IDG~G~~ 76 (326)
T PF00295_consen 1 CSSIGGGTVVVPAG-TYLLGPLFLKSTLHSDVGLTLDGTINFSYDNWEGP--N-SALIYAENAENITITGKGTIDGNGQA 76 (326)
T ss_dssp HSEEEEESEEESTS-TEEEEETSEETECETTCEEEEESEEEEG-EESTSE----SEEEEEESEEEEECTTSSEEE--GGG
T ss_pred CcCCcCCEEEECCC-CeEEceeEEEcccCCCeEEEEEEEEEeCCCcccCC--c-cEEEEEEceEEEEecCCceEcCchhh
Confidence 44455679999999 99999999977667999999999998875444433 2 68899999999999999999999999
Q ss_pred hhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCCceeEEEceecEEEEeEEEECCCCCCCCCceeeeceecEE
Q 013309 162 WWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVE 241 (445)
Q Consensus 162 ~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~ 241 (445)
||...+..+ .+...||+++.|.+|+|++|++++++|+|.|++++..|++++|++++|.++...+|+||||+.+|+||+
T Consensus 77 w~~~~~~~~--~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~ 154 (326)
T PF00295_consen 77 WWDGSGDAN--NNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVT 154 (326)
T ss_dssp TCSSCTTHC--CSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEE
T ss_pred hhccccccc--cccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEE
Confidence 998543211 344689999999999999999999999999999999999999999999998877999999999999999
Q ss_pred EEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCCCccEEeEEEEcEEEeCCcceEEEEEecCCCceeee
Q 013309 242 VKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATN 321 (445)
Q Consensus 242 I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~i~~~~g~~g~v~n 321 (445)
|+||+|+++||||++|++..||+|+||+|..+||++|||++.......|+||+|+||+|.++.+|++||+++++.|.|+|
T Consensus 155 I~n~~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~~G~v~n 234 (326)
T PF00295_consen 155 IENCFIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPGGGGYVSN 234 (326)
T ss_dssp EESEEEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETTTSEEEEE
T ss_pred EEEeecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecccceEEec
Confidence 99999999999999999888999999999999999999986543335799999999999999999999999999999999
Q ss_pred EEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCcceEEEEEEEeEEEEccCcceEEEEecCCCCeeCeEEEeEEEEecCC
Q 013309 322 IQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSG 401 (445)
Q Consensus 322 i~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~f~ni~~~~~~~~~~~i~~~~~~~~~~i~~~nv~i~~~~~ 401 (445)
|+|+||+|+++.+||.|++.|.+ ..++..++..+.|+||+|+||+++.....++++.|.+..||+||+|+||+|+. +
T Consensus 235 I~f~ni~~~~v~~pi~i~~~y~~-~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~--g 311 (326)
T PF00295_consen 235 ITFENITMENVKYPIFIDQDYRD-GGPCGKPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG--G 311 (326)
T ss_dssp EEEEEEEEEEESEEEEEEEEECT-TEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES--S
T ss_pred eEEEEEEecCCceEEEEEecccc-ccccCcccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc--C
Confidence 99999999999999999999987 33455445678999999999999998866999999999999999999999998 2
Q ss_pred Cccceeeeeeeec
Q 013309 402 GIAKSFCWEAYGS 414 (445)
Q Consensus 402 ~~~~~~c~n~~~~ 414 (445)
...+.|.|+...
T Consensus 312 -~~~~~c~nv~~~ 323 (326)
T PF00295_consen 312 -KKPAQCKNVPSG 323 (326)
T ss_dssp -BSESEEBSCCTT
T ss_pred -CcCeEEECCCCC
Confidence 568899998643
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.1e-42 Score=353.64 Aligned_cols=281 Identities=31% Similarity=0.503 Sum_probs=238.6
Q ss_pred CCCCCCeeEEeecccccCCCCCccHHHHHHHHHHHcCCCCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEe-e-EEECC
Q 013309 47 TRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEIS-G-TIVAP 124 (445)
Q Consensus 47 ~~~~~~~~~~v~dfGa~gdg~tDdT~Aiq~Ai~~a~~~~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~-G-~i~~~ 124 (445)
........++|++|||+|||.+|+++|||+||+ +|+..+|++|+||+| +|+.++|+| ||+++|+++ | +|+.+
T Consensus 75 ~~~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~-~ca~a~Gg~V~lPaG-tylsg~l~L----KS~~~L~l~egatl~~~ 148 (542)
T COG5434 75 KTAATDTAFSVSDDGAVGDGATDNTAAIQAAID-ACASAGGGTVLLPAG-TYLSGPLFL----KSNVTLHLAEGATLLAS 148 (542)
T ss_pred ccccccceeeeccccccccCCccCHHHHHHHHH-hhhhhcCceEEECCc-eeEeeeEEE----ecccEEEecCCceeeCC
Confidence 334456789999999999999999999999999 677677899999999 999999999 999999996 6 89999
Q ss_pred CCcCCcCC------CCc-----------------------cccEEEeceeeEE-EEeceEEecCC----chhhccccccC
Q 013309 125 KDPDVWKG------LNR-----------------------RRWLYFNRVNHLT-VQGGGTINGMG----QEWWSRSCKIN 170 (445)
Q Consensus 125 ~~~~~~~~------~~~-----------------------~~~i~~~~~~nv~-I~G~G~IDG~G----~~~w~~~~~~~ 170 (445)
.++.+|+. ... ...+.....+|.. |.|.|+++|++ ..||.......
T Consensus 149 ~~p~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~~ 228 (542)
T COG5434 149 SNPKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVE 228 (542)
T ss_pred CChhhccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccchh
Confidence 99988872 000 1122222334554 88889999964 22775433000
Q ss_pred CCCCCC--CCCeEEEEEeecceEEeceEEEcCCCceeEEEceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEe
Q 013309 171 TTNPCR--HAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVG 248 (445)
Q Consensus 171 ~~~~~~--~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~ 248 (445)
..... .||..+.+..|+||+++|++|.+++.|.+++..|++++++|++|.++... |+|||++.+|+|++|++|+|.
T Consensus 229 -~~i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fd 306 (542)
T COG5434 229 -TRIGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFD 306 (542)
T ss_pred -hcccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEe
Confidence 01111 59999999999999999999999999999999999999999999997755 999999999999999999999
Q ss_pred cCCccEEEeCC-----------ceeEEEEeeEEcCCce-EEEeecCCcCCCccEEeEEEEcEEEeCCcceEEEEEecCCC
Q 013309 249 TGDDCISIVGN-----------SSLIRIRNFACGPGHG-ISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGS 316 (445)
Q Consensus 249 ~gdD~i~i~~~-----------~~ni~I~n~~~~~~~g-i~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~i~~~~g~~ 316 (445)
++||||+++++ ++||.|+||.+..+|| +.+|| ++.+.++||++|||.|.++.+|||||+..+++
T Consensus 307 tgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gs----e~~ggv~ni~ved~~~~~~d~GLRikt~~~~g 382 (542)
T COG5434 307 TGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGS----EMGGGVQNITVEDCVMDNTDRGLRIKTNDGRG 382 (542)
T ss_pred cCCceEEeecccCCcccccccccccEEEecceecccccceEeee----ecCCceeEEEEEeeeeccCcceeeeeeecccc
Confidence 99999999985 6999999999999997 88899 68999999999999999999999999999999
Q ss_pred ceeeeEEEEeEEEecCCccEEEE
Q 013309 317 GSATNIQFLDVLMKNVSNPIIID 339 (445)
Q Consensus 317 g~v~ni~~~ni~~~~~~~~i~i~ 339 (445)
|.++||+|++++|.++..+..|.
T Consensus 383 G~v~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 383 GGVRNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred eeEEEEEEecccccCcccceeee
Confidence 99999999999999986555444
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.94 E-value=8.2e-26 Score=223.18 Aligned_cols=251 Identities=14% Similarity=0.177 Sum_probs=177.4
Q ss_pred CCCCCCCeeEEeecccccCCCCCccHHHHHHHHHHHcCCCCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEe-eEEECC
Q 013309 46 GTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEIS-GTIVAP 124 (445)
Q Consensus 46 ~~~~~~~~~~~v~dfGa~gdg~tDdT~Aiq~Ai~~a~~~~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~-G~i~~~ 124 (445)
+++..+.+.+++++|||++||.+|+|+|||+||++| +.+ +++|.+|+| +|+.++|.| +++++|.++ |....
T Consensus 29 ~~p~~p~r~~dv~~fGa~~dG~td~T~ALQaAIdaA-a~g-G~tV~Lp~G-~Y~~G~L~L----~spltL~G~~gAt~~- 100 (455)
T TIGR03808 29 AAPLTSTLGRDATQYGVRPNSPDDQTRALQRAIDEA-ARA-QTPLALPPG-VYRTGPLRL----PSGAQLIGVRGATRL- 100 (455)
T ss_pred ccCCCCccCCCHHHcCcCCCCcchHHHHHHHHHHHh-hcC-CCEEEECCC-ceecccEEE----CCCcEEEecCCcEEE-
Confidence 455566777999999999999999999999999954 433 578999999 999999999 899999988 43210
Q ss_pred CCcCCcCCCCccccEEEeceeeEEEEeceEEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCCce
Q 013309 125 KDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMH 204 (445)
Q Consensus 125 ~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~ 204 (445)
.+. ....++...+++|++|+|. +|+|+|..| ..+|.+|.+..|++++|++++|.++..|+
T Consensus 101 ----vId--G~~~lIiai~A~nVTIsGL-tIdGsG~dl-------------~~rdAgI~v~~a~~v~Iedn~L~gsg~FG 160 (455)
T TIGR03808 101 ----VFT--GGPSLLSSEGADGIGLSGL-TLDGGGIPL-------------PQRRGLIHCQGGRDVRITDCEITGSGGNG 160 (455)
T ss_pred ----EEc--CCceEEEEecCCCeEEEee-EEEeCCCcc-------------cCCCCEEEEccCCceEEEeeEEEcCCcce
Confidence 011 1145676778899999997 999999654 24777999999999999999999999999
Q ss_pred eEEEcee----------------------cEEEEeEEEECCCC--------------------------------CCCCC
Q 013309 205 IAFTNCL----------------------RVVISNLEVIAPAE--------------------------------SPNTD 230 (445)
Q Consensus 205 i~~~~~~----------------------nv~I~n~~I~~~~~--------------------------------~~n~D 230 (445)
+.+..|+ ++.|++.+|....+ ....+
T Consensus 161 I~L~~~~~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GN 240 (455)
T TIGR03808 161 IWLETVSGDISGNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGN 240 (455)
T ss_pred EEEEcCcceEecceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccc
Confidence 9999999 66666655554322 23456
Q ss_pred ceeeeceecEEEEeeEEecCC-ccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCCCccEEeEEEEcEEEeCCcceEEE
Q 013309 231 GIHISASRGVEVKNSIVGTGD-DCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRI 309 (445)
Q Consensus 231 Gi~~~~s~nv~I~n~~i~~gd-D~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~i 309 (445)
||+++.+.+++|++++|+..+ |+|.+.+ ++|+.|++++|.+-+=.++.++ ...+.-.|+|+.+.+...|+.+
T Consensus 241 GI~~~~a~~v~V~gN~I~~~r~dgI~~ns-ss~~~i~~N~~~~~R~~alhym------fs~~g~~i~~N~~~g~~~G~av 313 (455)
T TIGR03808 241 AINAFRAGNVIVRGNRIRNCDYSAVRGNS-ASNIQITGNSVSDVREVALYSE------FAFEGAVIANNTVDGAAVGVSV 313 (455)
T ss_pred cEEEEccCCeEEECCEEeccccceEEEEc-ccCcEEECcEeeeeeeeEEEEE------EeCCCcEEeccEEecCcceEEE
Confidence 677777677777777777666 6666665 5666666666653321122221 0112245666666666667766
Q ss_pred EEecC--CCceeeeEEEEeEEEec
Q 013309 310 KTWQG--GSGSATNIQFLDVLMKN 331 (445)
Q Consensus 310 ~~~~g--~~g~v~ni~~~ni~~~~ 331 (445)
..... +-..+++-.++|++-+.
T Consensus 314 ~nf~~ggr~~~~~gn~irn~~~~~ 337 (455)
T TIGR03808 314 CNFNEGGRLAVVQGNIIRNLIPKR 337 (455)
T ss_pred EeecCCceEEEEecceeeccccCC
Confidence 65532 23456666666666654
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.86 E-value=2e-20 Score=175.09 Aligned_cols=213 Identities=30% Similarity=0.415 Sum_probs=119.6
Q ss_pred eEEeecccccCCCCCccHHHHHHHHHHHcCCCCCcEEEEcCCcEEEee-eeeecCCCCCCeeEeEee---E-EECCCCcC
Q 013309 54 VIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIH-PIDISGPCKSRLTLEISG---T-IVAPKDPD 128 (445)
Q Consensus 54 ~~~v~dfGa~gdg~tDdT~Aiq~Ai~~a~~~~gg~~v~~P~G~~Yl~~-~l~l~~~~~s~v~l~~~G---~-i~~~~~~~ 128 (445)
++||+||||+|||++|||+|||+||+++ +..++++|+||+| +|+++ +|.+ +++++|+++| + +.......
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~-~~~~g~~v~~P~G-~Y~i~~~l~~----~s~v~l~G~g~~~~~~~~~~~~~ 74 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAA-AAAGGGVVYFPPG-TYRISGTLII----PSNVTLRGAGGNSTILFLSGSGD 74 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHH-CSTTSEEEEE-SE-EEEESS-EEE-----TTEEEEESSTTTEEEEECTTTS
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhc-ccCCCeEEEEcCc-EEEEeCCeEc----CCCeEEEccCCCeeEEEecCccc
Confidence 4899999999999999999999999644 4455799999999 99997 5999 8999999985 2 33222212
Q ss_pred CcCCCCccccEEEec-eee--EEEEeceEEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCCcee
Q 013309 129 VWKGLNRRRWLYFNR-VNH--LTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHI 205 (445)
Q Consensus 129 ~~~~~~~~~~i~~~~-~~n--v~I~G~G~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i 205 (445)
.+.. ......+.. -.+ +.|++ -+|++++... ......+.+..+++++|+++++.+....++
T Consensus 75 ~~~~--~~~~~~~~~~~~~~~~~i~n-l~i~~~~~~~-------------~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i 138 (225)
T PF12708_consen 75 SFSV--VPGIGVFDSGNSNIGIQIRN-LTIDGNGIDP-------------NNNNNGIRFNSSQNVSISNVRIENSGGDGI 138 (225)
T ss_dssp TSCC--EEEEEECCSCSCCEEEEEEE-EEEEETCGCE--------------SCEEEEEETTEEEEEEEEEEEES-SS-SE
T ss_pred cccc--ccceeeeecCCCCceEEEEe-eEEEcccccC-------------CCCceEEEEEeCCeEEEEeEEEEccCccEE
Confidence 2110 001111111 011 11333 2344433211 011346777788888888888888777777
Q ss_pred EEEceecEEEEeEEEECCCCCCCCCceeeec-eecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcC--CceEEEeecC
Q 013309 206 AFTNCLRVVISNLEVIAPAESPNTDGIHISA-SRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP--GHGISIGSLG 282 (445)
Q Consensus 206 ~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~-s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~--~~gi~igs~g 282 (445)
.+..+....+.+..... ++.+.. +.++.+.++.+..+++++.. +.++++|+||.+.. ..||.+...
T Consensus 139 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~i~n~~~~~~~~~gi~i~~~- 207 (225)
T PF12708_consen 139 YFNTGTDYRIIGSTHVS--------GIFIDNGSNNVIVNNCIFNGGDNGIIL--GNNNITISNNTFEGNCGNGINIEGG- 207 (225)
T ss_dssp EEECCEECEEECCEEEE--------EEEEESCEEEEEEECEEEESSSCSEEC--EEEEEEEECEEEESSSSESEEEEEC-
T ss_pred EEEccccCcEeecccce--------eeeeccceeEEEECCccccCCCceeEe--ecceEEEEeEEECCccceeEEEECC-
Confidence 77655444443322221 233332 34566677777776666322 23666777776654 235655431
Q ss_pred CcCCCccEEeEEEEcEEEeCCcceE
Q 013309 283 KSNSSVRIHDIMVYGALISNTQNGV 307 (445)
Q Consensus 283 ~~~~~~~v~nv~i~n~~~~~~~~gi 307 (445)
.+++|+|++|.++..|+
T Consensus 208 --------~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 208 --------SNIIISNNTIENCDDGI 224 (225)
T ss_dssp --------SEEEEEEEEEESSSEEE
T ss_pred --------eEEEEEeEEEECCccCc
Confidence 23666666666665554
No 11
>PLN02218 polygalacturonase ADPG
Probab=99.83 E-value=3.7e-18 Score=172.77 Aligned_cols=224 Identities=20% Similarity=0.237 Sum_probs=172.8
Q ss_pred eEEEEEeecceEEec---eEEEcCC-------------------CceeEEEceecEEEEeEEEECCCCCCCCCceeeece
Q 013309 180 TAITFHKCKNLKVQN---LRVVNSQ-------------------QMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISAS 237 (445)
Q Consensus 180 ~~i~~~~~~nv~I~~---v~i~ns~-------------------~~~i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s 237 (445)
.++.+.+.+|++|.+ =+|.... -..+.+..|+|++|+++++.+++.. .+++..|
T Consensus 148 ~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w----~i~~~~~ 223 (431)
T PLN02218 148 KWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQI----QISIEKC 223 (431)
T ss_pred cCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCE----EEEEEce
Confidence 358889999999988 2332111 1247889999999999999985432 4888899
Q ss_pred ecEEEEeeEEec-----CCccEEEeCCceeEEEEeeEEcCCc-eEEEeecCCcCCCccEEeEEEEcEEEeCCcceEEEEE
Q 013309 238 RGVEVKNSIVGT-----GDDCISIVGNSSLIRIRNFACGPGH-GISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKT 311 (445)
Q Consensus 238 ~nv~I~n~~i~~-----gdD~i~i~~~~~ni~I~n~~~~~~~-gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~i~~ 311 (445)
+||+|+|.+|.+ .-|+|.+.+ ++||+|+||++..++ .|+|++ +.+||+|+||++.. .+|+.|.+
T Consensus 224 ~nV~i~~v~I~a~~~spNTDGIdi~s-s~nV~I~n~~I~tGDDcIaIks--------gs~nI~I~n~~c~~-GHGisIGS 293 (431)
T PLN02218 224 SNVQVSNVVVTAPADSPNTDGIHITN-TQNIRVSNSIIGTGDDCISIES--------GSQNVQINDITCGP-GHGISIGS 293 (431)
T ss_pred eeEEEEEEEEeCCCCCCCCCcEeecc-cceEEEEccEEecCCceEEecC--------CCceEEEEeEEEEC-CCCEEECc
Confidence 999999999986 358898877 899999999999876 699987 35899999999976 58999987
Q ss_pred ecCC--CceeeeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCcceEEEEEEEeEEEEccCcceEEEEecC-------
Q 013309 312 WQGG--SGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSD------- 382 (445)
Q Consensus 312 ~~g~--~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~f~ni~~~~~~~~~~~i~~~~------- 382 (445)
.-.+ .+.|+||+++|+++.+..++++|+++- ...+.++||+|+||++..... |+.|....
T Consensus 294 ~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~----------Gg~G~v~nI~f~ni~m~~V~~-pI~Idq~Y~~~~~~~ 362 (431)
T PLN02218 294 LGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQ----------GGSGTASNIIFQNIQMENVKN-PIIIDQDYCDKSKCT 362 (431)
T ss_pred CCCCCCCceEEEEEEEccEEecCCcceEEeecC----------CCCeEEEEEEEEeEEEEcccc-cEEEEeeccCCCCCC
Confidence 6322 468999999999999999999999862 234689999999999999875 78887432
Q ss_pred ----CCCeeCeEEEeEEEEecCCCc------cceeeeeeeecccceecC-CCccCCC
Q 013309 383 ----DSPCEGLFLEDVQLVSHSGGI------AKSFCWEAYGSSVGQVEP-PPCFACS 428 (445)
Q Consensus 383 ----~~~~~~i~~~nv~i~~~~~~~------~~~~c~n~~~~~~~~~~p-~~c~~~~ 428 (445)
...++||+|+||+.+.+.... +..-|+|+...-.....+ ..|.+..
T Consensus 363 ~~~s~v~I~nI~~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~~~~c~n~~ 419 (431)
T PLN02218 363 SQQSAVQVKNVVYRNISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGGKATCTNAN 419 (431)
T ss_pred CCCCCeEEEEEEEEeEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECCeeeEEEee
Confidence 123899999999988664321 334566766554333334 6688877
No 12
>PLN02793 Probable polygalacturonase
Probab=99.83 E-value=4e-18 Score=173.34 Aligned_cols=222 Identities=21% Similarity=0.298 Sum_probs=171.6
Q ss_pred CCCeeEeEeeEEECCCCcCCcCCC----------CccccEEEeceeeEEEEeceEEecCCchhhccccccCCCCCCCCCC
Q 013309 110 KSRLTLEISGTIVAPKDPDVWKGL----------NRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAP 179 (445)
Q Consensus 110 ~s~v~l~~~G~i~~~~~~~~~~~~----------~~~~~i~~~~~~nv~I~G~G~IDG~G~~~w~~~~~~~~~~~~~~rp 179 (445)
.++++|.+.|+|...- ...|... ....++.+.+++|++|+|--+.+.. .|
T Consensus 142 ~~ni~ItG~G~IDG~G-~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp---~~---------------- 201 (443)
T PLN02793 142 VNHLTVEGGGTVNGMG-HEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ---QM---------------- 201 (443)
T ss_pred CceEEEEeceEEECCC-cccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC---Ce----------------
Confidence 5788888888886533 2334210 1235789999999999995544332 23
Q ss_pred eEEEEEeecceEEeceEEEcC----CCceeEEEceecEEEEeEEEECCCCCCCCCceeee-ceecEEEEeeEEecCCccE
Q 013309 180 TAITFHKCKNLKVQNLRVVNS----QQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCI 254 (445)
Q Consensus 180 ~~i~~~~~~nv~I~~v~i~ns----~~~~i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i 254 (445)
.+.+.+|+||+|++++|.++ ...+|++..|+||+|+|+.|.+. .|+|-+. +|+||+|+||.+..|. +|
T Consensus 202 -~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~g-----DDcIaik~~s~nI~I~n~~c~~Gh-Gi 274 (443)
T PLN02793 202 -HIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTG-----DDCISIVGNSSRIKIRNIACGPGH-GI 274 (443)
T ss_pred -EEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCC-----CCeEEecCCcCCEEEEEeEEeCCc-cE
Confidence 38899999999999999874 46789999999999999999984 5788886 5899999999998775 69
Q ss_pred EEeC--------CceeEEEEeeEEcCC-ceEEEeecCCcCCCccEEeEEEEcEEEeCCcceEEEEEecCC----------
Q 013309 255 SIVG--------NSSLIRIRNFACGPG-HGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGG---------- 315 (445)
Q Consensus 255 ~i~~--------~~~ni~I~n~~~~~~-~gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~i~~~~g~---------- 315 (445)
++++ +.+||+|+||++.++ .|++|++.. ...+.++||+|+|+.|.+..++|.|......
T Consensus 275 sIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~--g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts 352 (443)
T PLN02793 275 SIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQ--GGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTS 352 (443)
T ss_pred EEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeC--CCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCC
Confidence 9987 268999999999875 699999852 1357899999999999999999998865311
Q ss_pred CceeeeEEEEeEEEecC-CccEEEEeeeCCCCCCCCCCCCcceEEEEEEEeEEEEccC
Q 013309 316 SGSATNIQFLDVLMKNV-SNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSAT 372 (445)
Q Consensus 316 ~g~v~ni~~~ni~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~f~ni~~~~~~ 372 (445)
...++||+|+||+-+.. +.++.+. |. +..+++||+|+||+++...
T Consensus 353 ~v~I~nI~~~nI~Gt~~~~~ai~l~---cs---------~~~pc~ni~l~nI~l~~~~ 398 (443)
T PLN02793 353 AVKVENISFVHIKGTSATEEAIKFA---CS---------DSSPCEGLYLEDVQLLSST 398 (443)
T ss_pred CeEEEeEEEEEEEEEEcccccEEEE---eC---------CCCCEeeEEEEeeEEEecC
Confidence 23689999999988764 3456654 22 2346999999999998553
No 13
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.83 E-value=5.8e-18 Score=170.92 Aligned_cols=233 Identities=18% Similarity=0.194 Sum_probs=176.0
Q ss_pred eEEEEEeecceEEeceEEEcCC---Cc--------eeEEEceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEe
Q 013309 180 TAITFHKCKNLKVQNLRVVNSQ---QM--------HIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVG 248 (445)
Q Consensus 180 ~~i~~~~~~nv~I~~v~i~ns~---~~--------~i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~ 248 (445)
.+|.+.++++++|.|--..+.. .| .+.+..|+|++|+++++.+.+.. .+++..|++|+|++.+|.
T Consensus 105 ~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~w----~i~i~~c~nV~i~~l~I~ 180 (456)
T PLN03003 105 QWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPMA----HIHISECNYVTISSLRIN 180 (456)
T ss_pred ceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCcE----EEEEeccccEEEEEEEEe
Confidence 4799999999999985444321 22 57899999999999999875432 378889999999999998
Q ss_pred cC-----CccEEEeCCceeEEEEeeEEcCCc-eEEEeecCCcCCCccEEeEEEEcEEEeCCcceEEEEEecC--CCceee
Q 013309 249 TG-----DDCISIVGNSSLIRIRNFACGPGH-GISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQG--GSGSAT 320 (445)
Q Consensus 249 ~g-----dD~i~i~~~~~ni~I~n~~~~~~~-gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~i~~~~g--~~g~v~ 320 (445)
+. -|+|.+.+ ++||+|+||.+..++ +|+|++ +.+||+|+|+++... +||.|.+.-. ..+.|+
T Consensus 181 ap~~spNTDGIDi~~-S~nV~I~n~~I~tGDDCIaiks--------gs~NI~I~n~~c~~G-HGISIGSlg~~g~~~~V~ 250 (456)
T PLN03003 181 APESSPNTDGIDVGA-SSNVVIQDCIIATGDDCIAINS--------GTSNIHISGIDCGPG-HGISIGSLGKDGETATVE 250 (456)
T ss_pred CCCCCCCCCcEeecC-cceEEEEecEEecCCCeEEeCC--------CCccEEEEeeEEECC-CCeEEeeccCCCCcceEE
Confidence 63 58898877 899999999999875 699987 357999999999764 8999998632 235799
Q ss_pred eEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCcceEEEEEEEeEEEEccCcceEEEEecC--------------CCCe
Q 013309 321 NIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSD--------------DSPC 386 (445)
Q Consensus 321 ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~f~ni~~~~~~~~~~~i~~~~--------------~~~~ 386 (445)
||+++|+++.+..++++|+++.. +.+.++||+|+||++..... |+.|.... ...+
T Consensus 251 NV~v~n~~~~~T~nGvRIKT~~G----------g~G~v~nItf~nI~m~nV~~-pI~Idq~Y~~~~~~~~~~~~~s~v~I 319 (456)
T PLN03003 251 NVCVQNCNFRGTMNGARIKTWQG----------GSGYARMITFNGITLDNVEN-PIIIDQFYNGGDSDNAKDRKSSAVEV 319 (456)
T ss_pred EEEEEeeEEECCCcEEEEEEeCC----------CCeEEEEEEEEeEEecCccc-eEEEEcccCCCCCCCcccCCCCCcEE
Confidence 99999999999999999998732 34689999999999998876 88886432 1257
Q ss_pred eCeEEEeEEEEecCCCccce------eeeeeeeccccee---------cCCCccCCCCCcccccCCC
Q 013309 387 EGLFLEDVQLVSHSGGIAKS------FCWEAYGSSVGQV---------EPPPCFACSEGLIQQKAPS 438 (445)
Q Consensus 387 ~~i~~~nv~i~~~~~~~~~~------~c~n~~~~~~~~~---------~p~~c~~~~~~~~~~~~~~ 438 (445)
+||+|+||+-+......... -|+|+.-.-.... ..+-|.+.+ |.+..+.|.
T Consensus 320 snI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~-G~~~~~~~~ 385 (456)
T PLN03003 320 SKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVR-GASTIAVPG 385 (456)
T ss_pred EeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccc-cccCceECC
Confidence 89999999876554322223 3545433222111 226698877 666666665
No 14
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.82 E-value=9.4e-18 Score=168.72 Aligned_cols=223 Identities=17% Similarity=0.257 Sum_probs=170.6
Q ss_pred CCCeeEeEeeEEECCCCcCCcCC---------CCccccEEEeceeeEEEEeceEEecCCchhhccccccCCCCCCCCCCe
Q 013309 110 KSRLTLEISGTIVAPKDPDVWKG---------LNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPT 180 (445)
Q Consensus 110 ~s~v~l~~~G~i~~~~~~~~~~~---------~~~~~~i~~~~~~nv~I~G~G~IDG~G~~~w~~~~~~~~~~~~~~rp~ 180 (445)
..+++|.+.|+|...-. ..|.. .....++.+.+++|+.|+|--.. .+.+|
T Consensus 121 ~~ni~I~G~G~IDG~G~-~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~---nSp~w----------------- 179 (404)
T PLN02188 121 VNGLTLTGGGTFDGQGA-AAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSV---NSKFF----------------- 179 (404)
T ss_pred eeeEEEEeeEEEeCCCc-ccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEE---cCCCe-----------------
Confidence 46788888888876542 34431 11235688999999999994332 22334
Q ss_pred EEEEEeecceEEeceEEEcC----CCceeEEEceecEEEEeEEEECCCCCCCCCceeee-ceecEEEEeeEEecCCccEE
Q 013309 181 AITFHKCKNLKVQNLRVVNS----QQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCIS 255 (445)
Q Consensus 181 ~i~~~~~~nv~I~~v~i~ns----~~~~i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~ 255 (445)
.+++.+|+||+|++++|.++ ...++++..|++|+|+|+.|.+. .|+|.+. .++||+|+|+....+. +|+
T Consensus 180 ~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~G-----DDcIaiksg~~nI~I~n~~c~~gh-Gis 253 (404)
T PLN02188 180 HIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTG-----DDCISIGQGNSQVTITRIRCGPGH-GIS 253 (404)
T ss_pred EEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCC-----CcEEEEccCCccEEEEEEEEcCCC-cEE
Confidence 48999999999999999864 35789999999999999999984 5789886 4789999999997764 688
Q ss_pred EeC--------CceeEEEEeeEEcCC-ceEEEeecCCcCCCccEEeEEEEcEEEeCCcceEEEEEecC----------CC
Q 013309 256 IVG--------NSSLIRIRNFACGPG-HGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQG----------GS 316 (445)
Q Consensus 256 i~~--------~~~ni~I~n~~~~~~-~gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~i~~~~g----------~~ 316 (445)
+++ +.+||+|+||++.++ +|+.|++.-.....+.++||+|+|+.|.+..++|.|..... ..
T Consensus 254 iGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~ 333 (404)
T PLN02188 254 VGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSG 333 (404)
T ss_pred eCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCC
Confidence 877 379999999999876 69999885222245789999999999999999998875311 12
Q ss_pred ceeeeEEEEeEEEecC-CccEEEEeeeCCCCCCCCCCCCcceEEEEEEEeEEEEcc
Q 013309 317 GSATNIQFLDVLMKNV-SNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSA 371 (445)
Q Consensus 317 g~v~ni~~~ni~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~f~ni~~~~~ 371 (445)
..++||+|+||+.+.. ..++.+. |. +..+++||+|+||+++..
T Consensus 334 v~I~nIt~~nI~gt~~~~~a~~l~---cs---------~~~pc~ni~~~nV~i~~~ 377 (404)
T PLN02188 334 VTLSDIYFKNIRGTSSSQVAVLLK---CS---------RGVPCQGVYLQDVHLDLS 377 (404)
T ss_pred cEEEeEEEEEEEEEecCceEEEEE---EC---------CCCCEeeEEEEeeEEEec
Confidence 5689999999999765 3355554 22 234699999999999755
No 15
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.82 E-value=7.3e-18 Score=166.65 Aligned_cols=219 Identities=23% Similarity=0.313 Sum_probs=165.4
Q ss_pred CCeeEeEeeEEECCCCcCCcCCC--------CccccEEEeceeeEEEEeceEEecCCchhhccccccCCCCCCCCCCeEE
Q 013309 111 SRLTLEISGTIVAPKDPDVWKGL--------NRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAI 182 (445)
Q Consensus 111 s~v~l~~~G~i~~~~~~~~~~~~--------~~~~~i~~~~~~nv~I~G~G~IDG~G~~~w~~~~~~~~~~~~~~rp~~i 182 (445)
.+++|...|+|..... ..|... ....++.+.+++|++|+|.-..+. ..| .+
T Consensus 60 ~ni~i~G~G~IDG~G~-~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~ns---p~w-----------------~~ 118 (326)
T PF00295_consen 60 ENITITGKGTIDGNGQ-AWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNS---PFW-----------------HI 118 (326)
T ss_dssp EEEECTTSSEEE--GG-GTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES----SSE-----------------SE
T ss_pred EEEEecCCceEcCchh-hhhccccccccccccccceeeeeeecceEEEeeEecCC---Cee-----------------EE
Confidence 4566666677654322 233221 234679999999999999433332 224 38
Q ss_pred EEEeecceEEeceEEEcCC----CceeEEEceecEEEEeEEEECCCCCCCCCceeeecee-cEEEEeeEEecCCccEEEe
Q 013309 183 TFHKCKNLKVQNLRVVNSQ----QMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASR-GVEVKNSIVGTGDDCISIV 257 (445)
Q Consensus 183 ~~~~~~nv~I~~v~i~ns~----~~~i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~-nv~I~n~~i~~gdD~i~i~ 257 (445)
.+.+|+|++|++++|.++. ..++++..|++++|+|+.|.+. .|+|.+.+.+ ||+|+||.+..+. +++++
T Consensus 119 ~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~g-----DD~Iaiks~~~ni~v~n~~~~~gh-GisiG 192 (326)
T PF00295_consen 119 HINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDNG-----DDCIAIKSGSGNILVENCTCSGGH-GISIG 192 (326)
T ss_dssp EEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEESS-----SESEEESSEECEEEEESEEEESSS-EEEEE
T ss_pred EEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeecccc-----cCcccccccccceEEEeEEEeccc-cceee
Confidence 8999999999999999754 4689999999999999999984 5789998755 9999999998765 48887
Q ss_pred C---C-----ceeEEEEeeEEcCC-ceEEEeecCCcCCCccEEeEEEEcEEEeCCcceEEEEEecC---------CCcee
Q 013309 258 G---N-----SSLIRIRNFACGPG-HGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQG---------GSGSA 319 (445)
Q Consensus 258 ~---~-----~~ni~I~n~~~~~~-~gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~i~~~~g---------~~g~v 319 (445)
+ + .+||+|+||++.++ +|+.|++.- ...+.++||+|+|+++.+..+++.|..... ....+
T Consensus 193 S~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~--~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i 270 (326)
T PF00295_consen 193 SEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP--GGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSI 270 (326)
T ss_dssp EESSSSE--EEEEEEEEEEEEESESEEEEEEEET--TTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEE
T ss_pred eccCCccccEEEeEEEEEEEeeccceEEEEEEec--ccceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCceE
Confidence 5 2 48999999999875 589998841 246899999999999999989988875411 12479
Q ss_pred eeEEEEeEEEecCC-ccEEEEeeeCCCCCCCCCCCCcceEEEEEEEeEEEEc
Q 013309 320 TNIQFLDVLMKNVS-NPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTS 370 (445)
Q Consensus 320 ~ni~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~ni~f~ni~~~~ 370 (445)
+||+|+||+..... .++.+... +..+++||+|+||.++.
T Consensus 271 ~nI~~~nitg~~~~~~~i~i~~~------------~~~~~~ni~f~nv~i~~ 310 (326)
T PF00295_consen 271 SNITFRNITGTSAGSSAISIDCS------------PGSPCSNITFENVNITG 310 (326)
T ss_dssp EEEEEEEEEEEESTSEEEEEE-B------------TTSSEEEEEEEEEEEES
T ss_pred EEEEEEeeEEEeccceEEEEEEC------------CcCcEEeEEEEeEEEEc
Confidence 99999999998765 56666521 23469999999999987
No 16
>PLN03010 polygalacturonase
Probab=99.81 E-value=7.6e-17 Score=161.87 Aligned_cols=224 Identities=14% Similarity=0.179 Sum_probs=169.8
Q ss_pred eEEEEEeecceEEeceEEEcC---CCc-eeEEEceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEec-----C
Q 013309 180 TAITFHKCKNLKVQNLRVVNS---QQM-HIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGT-----G 250 (445)
Q Consensus 180 ~~i~~~~~~nv~I~~v~i~ns---~~~-~i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-----g 250 (445)
..+.|.+.+|++|.|==..+. ..| .+.+..|+|++|+++++.+++.. -+++..|++|+|++.+|.+ .
T Consensus 131 ~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~~----~i~i~~~~nv~i~~i~I~a~~~s~N 206 (409)
T PLN03010 131 MWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSPKN----HISIKTCNYVAISKINILAPETSPN 206 (409)
T ss_pred ceEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCCce----EEEEeccccEEEEEEEEeCCCCCCC
Confidence 468899999999998655553 234 58899999999999999985432 3888899999999999986 3
Q ss_pred CccEEEeCCceeEEEEeeEEcCCc-eEEEeecCCcCCCccEEeEEEEcEEEeCCcceEEEEEecC--CCceeeeEEEEeE
Q 013309 251 DDCISIVGNSSLIRIRNFACGPGH-GISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQG--GSGSATNIQFLDV 327 (445)
Q Consensus 251 dD~i~i~~~~~ni~I~n~~~~~~~-gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~i~~~~g--~~g~v~ni~~~ni 327 (445)
-|+|.+.+ ++||+|+||++..++ +|+|++ .-.++.|+++.+.. .+|+.|.+.-. ....|+||+|+|+
T Consensus 207 TDGiDi~~-s~nV~I~n~~I~~gDDcIaiks--------gs~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~ 276 (409)
T PLN03010 207 TDGIDISY-STNINIFDSTIQTGDDCIAINS--------GSSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHC 276 (409)
T ss_pred CCceeeec-cceEEEEeeEEecCCCeEEecC--------CCCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEee
Confidence 58888876 899999999999875 699987 13478888888865 48999988632 2256999999999
Q ss_pred EEecCCccEEEEeeeCCCCCCCCCCCCcceEEEEEEEeEEEEccCcceEEEEecC---C---------CCeeCeEEEeEE
Q 013309 328 LMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSD---D---------SPCEGLFLEDVQ 395 (445)
Q Consensus 328 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~f~ni~~~~~~~~~~~i~~~~---~---------~~~~~i~~~nv~ 395 (445)
++.+..++++|+.+.. +.+.++||+|+||++..... |+.|...+ . ..++||+|+||+
T Consensus 277 ~i~~t~~GirIKt~~G----------~~G~v~nItf~nI~m~~v~~-pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~ 345 (409)
T PLN03010 277 TFNQTTNGARIKTWQG----------GQGYARNISFENITLINTKN-PIIIDQQYIDKGKLDATKDSAVAISNVKYVGFR 345 (409)
T ss_pred EEeCCCcceEEEEecC----------CCEEEEEeEEEeEEEecCCc-cEEEEeeccCCCCCCCCCCCceEEEeEEEEeeE
Confidence 9999999999998732 34689999999999999865 78886431 1 247899999998
Q ss_pred EEecCCCcccee------eeeeeeccc------ceecCCCccCCC
Q 013309 396 LVSHSGGIAKSF------CWEAYGSSV------GQVEPPPCFACS 428 (445)
Q Consensus 396 i~~~~~~~~~~~------c~n~~~~~~------~~~~p~~c~~~~ 428 (445)
-+.......... |+|+..... |......|.+.+
T Consensus 346 GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~~~~~C~nv~ 390 (409)
T PLN03010 346 GTTSNENAITLKCSAITHCKDVVMDDIDVTMENGEKPKVECQNVE 390 (409)
T ss_pred EEeCCCccEEEEeCCCCCEeceEEEEEEEEecCCCccceEeeCcc
Confidence 876554333344 555544321 222346688866
No 17
>PLN02155 polygalacturonase
Probab=99.81 E-value=3.9e-17 Score=163.56 Aligned_cols=232 Identities=16% Similarity=0.171 Sum_probs=173.9
Q ss_pred eEEEEEeecceEEeceEEEcCC--C--------------ceeEEEceecEEEEeEEEECCCCCCCCCceeeeceecEEEE
Q 013309 180 TAITFHKCKNLKVQNLRVVNSQ--Q--------------MHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVK 243 (445)
Q Consensus 180 ~~i~~~~~~nv~I~~v~i~ns~--~--------------~~i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~ 243 (445)
.++.+.+.+++.|.+=+|.... . ..+.+..|++++|+++++.+.+.. -+++..|+||+|+
T Consensus 107 ~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w----~i~~~~~~nv~i~ 182 (394)
T PLN02155 107 YWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVS----HMTLNGCTNVVVR 182 (394)
T ss_pred eeEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCe----EEEEECeeeEEEE
Confidence 3678888888988884443211 0 237889999999999999985422 3778899999999
Q ss_pred eeEEecC-----CccEEEeCCceeEEEEeeEEcCCc-eEEEeecCCcCCCccEEeEEEEcEEEeCCcceEEEEEecC--C
Q 013309 244 NSIVGTG-----DDCISIVGNSSLIRIRNFACGPGH-GISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQG--G 315 (445)
Q Consensus 244 n~~i~~g-----dD~i~i~~~~~ni~I~n~~~~~~~-gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~i~~~~g--~ 315 (445)
+.+|.+. -|+|.+.+ ++||+|+||++..++ +|+|++ +.+||+|+|+++.. .+|+.|.+.-. .
T Consensus 183 ~v~I~~p~~~~NtDGidi~~-s~nV~I~~~~I~~gDDcIaik~--------gs~nI~I~n~~c~~-GhGisIGS~g~~~~ 252 (394)
T PLN02155 183 NVKLVAPGNSPNTDGFHVQF-STGVTFTGSTVQTGDDCVAIGP--------GTRNFLITKLACGP-GHGVSIGSLAKELN 252 (394)
T ss_pred EEEEECCCCCCCCCcccccc-ceeEEEEeeEEecCCceEEcCC--------CCceEEEEEEEEEC-CceEEeccccccCC
Confidence 9999862 38888877 899999999999875 699977 35799999999987 48999998621 3
Q ss_pred CceeeeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCcceEEEEEEEeEEEEccCcceEEEEecC------------C
Q 013309 316 SGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSD------------D 383 (445)
Q Consensus 316 ~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~f~ni~~~~~~~~~~~i~~~~------------~ 383 (445)
.+.|+||+++|+++.+..++++|+++... ..+.++||+|+||++..... |+.|.... .
T Consensus 253 ~~~V~nV~v~n~~~~~t~~GirIKT~~~~---------~gG~v~nI~f~ni~m~~v~~-pI~i~q~Y~~~~~~~~~~~s~ 322 (394)
T PLN02155 253 EDGVENVTVSSSVFTGSQNGVRIKSWARP---------STGFVRNVFFQDLVMKNVEN-PIIIDQNYCPTHEGCPNEYSG 322 (394)
T ss_pred CCcEEEEEEEeeEEeCCCcEEEEEEecCC---------CCEEEEEEEEEeEEEcCccc-cEEEEecccCCCCCCcCCCCC
Confidence 57899999999999999999999986321 34689999999999998876 78886321 1
Q ss_pred CCeeCeEEEeEEEEecCCCc------cceeeeeeeeccc------ceecCCCccCCCCCcccccC
Q 013309 384 SPCEGLFLEDVQLVSHSGGI------AKSFCWEAYGSSV------GQVEPPPCFACSEGLIQQKA 436 (445)
Q Consensus 384 ~~~~~i~~~nv~i~~~~~~~------~~~~c~n~~~~~~------~~~~p~~c~~~~~~~~~~~~ 436 (445)
..++||+|+||+.+...... ...-|+|+..... +...++-|.+.. |.+..+.
T Consensus 323 v~i~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~-G~~~~~~ 386 (394)
T PLN02155 323 VKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAV-GKSLGVI 386 (394)
T ss_pred eEEEEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccE-eEEcccC
Confidence 24899999999987663322 2334556554332 222236688876 7776663
No 18
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.78 E-value=1.2e-16 Score=159.73 Aligned_cols=272 Identities=14% Similarity=0.217 Sum_probs=155.1
Q ss_pred CcEEEEcCCcEEEeee---eeecCCCCCCe-eEeEe-eEEECCCCcCCcCCCCccccEEEeceeeEEEEeceEEecCCch
Q 013309 87 RTKIVFSAGYTFLIHP---IDISGPCKSRL-TLEIS-GTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQE 161 (445)
Q Consensus 87 g~~v~~P~G~~Yl~~~---l~l~~~~~s~v-~l~~~-G~i~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~IDG~G~~ 161 (445)
..+|||+|| +|.++. +.| ++++ +|+++ |+++.. ++.+....+|+.|.|.|++.|....
T Consensus 232 ~~~lYF~PG-Vy~ig~~~~l~L----~sn~~~VYlApGAyVkG------------Af~~~~~~~nv~i~G~GVLSGe~Yv 294 (582)
T PF03718_consen 232 KDTLYFKPG-VYWIGSDYHLRL----PSNTKWVYLAPGAYVKG------------AFEYTDTQQNVKITGRGVLSGEQYV 294 (582)
T ss_dssp SSEEEE-SE-EEEEBCTC-EEE-----TT--EEEE-TTEEEES-------------EEE---SSEEEEESSSEEE-TTS-
T ss_pred cceEEeCCc-eEEeCCCccEEE----CCCccEEEEcCCcEEEE------------EEEEccCCceEEEEeeEEEcCccee
Confidence 479999999 999874 788 7774 89998 766532 3444467899999999999998766
Q ss_pred hhccccccCC----CCCCCC-CCeEEEE---EeecceEEeceEEEcCCCceeEEEcee----cEEEEeEEEECCCCCCCC
Q 013309 162 WWSRSCKINT----TNPCRH-APTAITF---HKCKNLKVQNLRVVNSQQMHIAFTNCL----RVVISNLEVIAPAESPNT 229 (445)
Q Consensus 162 ~w~~~~~~~~----~~~~~~-rp~~i~~---~~~~nv~I~~v~i~ns~~~~i~~~~~~----nv~I~n~~I~~~~~~~n~ 229 (445)
|.....+... ...|+. .-+++.+ ..++++.++|++|.++|.|.+.+...+ +..|+|.++.... ..++
T Consensus 295 y~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW-~~qt 373 (582)
T PF03718_consen 295 YEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAW-YFQT 373 (582)
T ss_dssp TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE----CTT-
T ss_pred EeccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeE-Eecc
Confidence 5432111000 111111 1234553 456699999999999999999999655 4789999999754 3699
Q ss_pred CceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCc-e--EEEeecCCcCCCccEEeEEEEcEEEeCCc--
Q 013309 230 DGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGH-G--ISIGSLGKSNSSVRIHDIMVYGALISNTQ-- 304 (445)
Q Consensus 230 DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~-g--i~igs~g~~~~~~~v~nv~i~n~~~~~~~-- 304 (445)
|||.+.. +-+|+||++++.||+|.+.. .++.|+||+++..+ | +.+|. ....+++|.|+|+.+..+.
T Consensus 374 DGi~ly~--nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW-----~pr~isnv~veni~IIh~r~~ 444 (582)
T PF03718_consen 374 DGIELYP--NSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGW-----TPRNISNVSVENIDIIHNRWI 444 (582)
T ss_dssp ---B--T--T-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--C-----S---EEEEEEEEEEEEE---S
T ss_pred CCccccC--CCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeec-----cccccCceEEeeeEEEeeeee
Confidence 9999884 67889999999999996654 79999999998643 2 77775 3557999999999998762
Q ss_pred -------ceEEEEEecC---C-------CceeeeEEEEeEEEecCCc-cEEEEeeeCCCCCCCCCCCCcceEEEEEEEeE
Q 013309 305 -------NGVRIKTWQG---G-------SGSATNIQFLDVLMKNVSN-PIIIDQYYCDSPVPCANQTSAVKVENITFIHI 366 (445)
Q Consensus 305 -------~gi~i~~~~g---~-------~g~v~ni~~~ni~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~i~ni~f~ni 366 (445)
.+|.-.+... + .-.|++++|+|+++++.-. .+.|... .-.+|+.++|+
T Consensus 445 ~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~pl--------------qn~~nl~ikN~ 510 (582)
T PF03718_consen 445 WHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPL--------------QNYDNLVIKNV 510 (582)
T ss_dssp SGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--S--------------EEEEEEEEEEE
T ss_pred cccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeec--------------CCCcceEEEEe
Confidence 2443332211 0 1257899999999998643 4455421 13455555555
Q ss_pred EEE-----ccCcceEEEEec------CCCCeeCeEEEeEEEEec
Q 013309 367 KGT-----SATEEAIKFACS------DDSPCEGLFLEDVQLVSH 399 (445)
Q Consensus 367 ~~~-----~~~~~~~~i~~~------~~~~~~~i~~~nv~i~~~ 399 (445)
.+. .-......+... ......+|.|+|.+|.++
T Consensus 511 ~~~~w~~~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~ 554 (582)
T PF03718_consen 511 HFESWNGLDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGGE 554 (582)
T ss_dssp EECEET-CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETTE
T ss_pred ecccccCcccccceeeccccccccccccccccceEEEeEEECCE
Confidence 554 111111111111 123478999999998644
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.69 E-value=2.3e-14 Score=140.65 Aligned_cols=196 Identities=20% Similarity=0.272 Sum_probs=138.7
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCcEEEe-eeeeecCCCCCCeeEeEeeEEECCCCcCCcCCCCccccEEEeceeeEEEEec
Q 013309 74 FANAWKKACSFPARTKIVFSAGYTFLI-HPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGG 152 (445)
Q Consensus 74 iq~Ai~~a~~~~gg~~v~~P~G~~Yl~-~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~ 152 (445)
||+|+++| +. |++|++|+| +|.+ ++|.+. +++++|+.+|. +.
T Consensus 1 iQ~Ai~~A-~~--GDtI~l~~G-~Y~~~~~l~I~---~~~Iti~G~g~------------------------~~------ 43 (314)
T TIGR03805 1 LQEALIAA-QP--GDTIVLPEG-VFQFDRTLSLD---ADGVTIRGAGM------------------------DE------ 43 (314)
T ss_pred CHhHHhhC-CC--CCEEEECCC-EEEcceeEEEe---CCCeEEEecCC------------------------Cc------
Confidence 69999954 33 799999999 9976 577773 24455443320 00
Q ss_pred eEEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCCceeEEEceecEEEEeEEEECCCC---CCCC
Q 013309 153 GTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAE---SPNT 229 (445)
Q Consensus 153 G~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~n~~I~~~~~---~~n~ 229 (445)
-+||+.++. .....+ +..+++|+|+++++.++..+++.+..|++++|+++++..... ....
T Consensus 44 tvid~~~~~---------------~~~~~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~ 107 (314)
T TIGR03805 44 TILDFSGQV---------------GGAEGL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGA 107 (314)
T ss_pred cEEecccCC---------------CCCceE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCc
Confidence 124444321 001123 446899999999999998899999999999999999973221 2357
Q ss_pred CceeeeceecEEEEeeEEecC-CccEEEeCCceeEEEEeeEEcCCc-eEEEeecCCcCCCccEEeEEEEcEEEeCCcceE
Q 013309 230 DGIHISASRGVEVKNSIVGTG-DDCISIVGNSSLIRIRNFACGPGH-GISIGSLGKSNSSVRIHDIMVYGALISNTQNGV 307 (445)
Q Consensus 230 DGi~~~~s~nv~I~n~~i~~g-dD~i~i~~~~~ni~I~n~~~~~~~-gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi 307 (445)
+||.+..|++++|++|+++.. |++|.++. +++++|+||+++..+ ||.+.. ..++.|+|+.+.+...|+
T Consensus 108 ~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~i~~---------S~~~~v~~N~~~~N~~Gi 177 (314)
T TIGR03805 108 YGIYPVESTNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIEIEN---------SQNADVYNNIATNNTGGI 177 (314)
T ss_pred ceEEEeccCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEEEEe---------cCCcEEECCEEeccceeE
Confidence 899999999999999999884 55788875 789999999997654 777743 257888888888877788
Q ss_pred EEEEecCCC-ceeeeEEEEeEEEecC
Q 013309 308 RIKTWQGGS-GSATNIQFLDVLMKNV 332 (445)
Q Consensus 308 ~i~~~~g~~-g~v~ni~~~ni~~~~~ 332 (445)
.+-..++.. ..-++++++++++.+.
T Consensus 178 ~v~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 178 LVFDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred EEeecCCCCcCCccceEEECCEEECC
Confidence 886555431 2346777777777654
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.19 E-value=4.1e-10 Score=115.98 Aligned_cols=154 Identities=18% Similarity=0.226 Sum_probs=124.7
Q ss_pred CCceeEEEceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecCC----ccEEEeCCceeEEEEeeEEcCCc-e
Q 013309 201 QQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGD----DCISIVGNSSLIRIRNFACGPGH-G 275 (445)
Q Consensus 201 ~~~~i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gd----D~i~i~~~~~ni~I~n~~~~~~~-g 275 (445)
....+.+..|+||++++++|.+++. -++|+..|+|++++|.+|.+.+ |++.+.+ ++|++|++|+|..++ .
T Consensus 237 rp~~~~l~~c~NV~~~g~~i~ns~~----~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~ 311 (542)
T COG5434 237 RPRTVVLKGCRNVLLEGLNIKNSPL----WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDC 311 (542)
T ss_pred CCceEEEeccceEEEeeeEecCCCc----EEEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCce
Confidence 4457889999999999999998543 5789999999999999998754 4888877 999999999998765 5
Q ss_pred EEEeecCCcCC----CccEEeEEEEcEEEeCCcceEEEEEecCCCceeeeEEEEeEEEecCCccEEEEeeeCCCCCCCCC
Q 013309 276 ISIGSLGKSNS----SVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCAN 351 (445)
Q Consensus 276 i~igs~g~~~~----~~~v~nv~i~n~~~~~~~~gi~i~~~~g~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~ 351 (445)
|++.| |.... ...-++|+|+||.|.....++.+.++- .|.++||++||+.|.+...++.|+....
T Consensus 312 I~iks-g~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~--~ggv~ni~ved~~~~~~d~GLRikt~~~-------- 380 (542)
T COG5434 312 IAIKS-GAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM--GGGVQNITVEDCVMDNTDRGLRIKTNDG-------- 380 (542)
T ss_pred EEeec-ccCCcccccccccccEEEecceecccccceEeeeec--CCceeEEEEEeeeeccCcceeeeeeecc--------
Confidence 88877 33222 345699999999998665566676653 4699999999999999899999997632
Q ss_pred CCCcceEEEEEEEeEEEEccC
Q 013309 352 QTSAVKVENITFIHIKGTSAT 372 (445)
Q Consensus 352 ~~~~~~i~ni~f~ni~~~~~~ 372 (445)
.++.++||+|+++.+....
T Consensus 381 --~gG~v~nI~~~~~~~~nv~ 399 (542)
T COG5434 381 --RGGGVRNIVFEDNKMRNVK 399 (542)
T ss_pred --cceeEEEEEEecccccCcc
Confidence 3378999999999887663
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.05 E-value=6.2e-08 Score=95.32 Aligned_cols=186 Identities=15% Similarity=0.194 Sum_probs=129.5
Q ss_pred EEEEEeecceEEeceEEEc-------CCCceeEEEceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecCCcc
Q 013309 181 AITFHKCKNLKVQNLRVVN-------SQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDC 253 (445)
Q Consensus 181 ~i~~~~~~nv~I~~v~i~n-------s~~~~i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~ 253 (445)
.|.+..|++++|+++++.. ...+++.+..|++++|+++.+... ..+||.+..|++++|+++++.....+
T Consensus 79 GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~----~d~GIyv~~s~~~~v~nN~~~~n~~G 154 (314)
T TIGR03805 79 GVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGA----SDAGIYVGQSQNIVVRNNVAEENVAG 154 (314)
T ss_pred eEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECC----CcccEEECCCCCeEEECCEEccCcce
Confidence 5888999999999999972 246899999999999999999873 23599999999999999999998889
Q ss_pred EEEeCCceeEEEEeeEEcC-CceEEEeecCCcCCCccEEeEEEEcEEEeCCcc------eEEEEEecCCCcee----eeE
Q 013309 254 ISIVGNSSLIRIRNFACGP-GHGISIGSLGKSNSSVRIHDIMVYGALISNTQN------GVRIKTWQGGSGSA----TNI 322 (445)
Q Consensus 254 i~i~~~~~ni~I~n~~~~~-~~gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~------gi~i~~~~g~~g~v----~ni 322 (445)
|.+.. +.++.|+++++.+ ..|+.+..+-.. .....++++|+++.+.+... |-.+...+.+.|.+ +++
T Consensus 155 I~i~~-S~~~~v~~N~~~~N~~Gi~v~~~p~~-~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~~~~v 232 (314)
T TIGR03805 155 IEIEN-SQNADVYNNIATNNTGGILVFDLPGL-PQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMANRDV 232 (314)
T ss_pred EEEEe-cCCcEEECCEEeccceeEEEeecCCC-CcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEEcccce
Confidence 98875 7899999999875 457887543110 12345799999999986521 11121223334544 899
Q ss_pred EEEeEEEecCCc-cEEEEeeeCCCC--CCCCCCCCcceEEEEEEEeEEEEccCc
Q 013309 323 QFLDVLMKNVSN-PIIIDQYYCDSP--VPCANQTSAVKVENITFIHIKGTSATE 373 (445)
Q Consensus 323 ~~~ni~~~~~~~-~i~i~~~~~~~~--~~~~~~~~~~~i~ni~f~ni~~~~~~~ 373 (445)
+|+|+++.+... ++.+... ...+ .....+.-.+.-+||.+.+-+......
T Consensus 233 ~I~~N~i~~n~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~i~~N~~~~~g~ 285 (314)
T TIGR03805 233 EIFGNVISNNDTANVLISSY-HSTGLPDQPPDDGFDPYPRNISIHDNTFSDGGT 285 (314)
T ss_pred EEECCEEeCCcceeEEEEec-ccccCCCCCcCCCccCCCcceEEEccEeecCCC
Confidence 999999988764 6666433 2211 000111112344777777777665543
No 22
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=98.90 E-value=2.6e-07 Score=86.20 Aligned_cols=206 Identities=21% Similarity=0.292 Sum_probs=118.6
Q ss_pred CCCCeeEEeecccccCCCCCccHHHHHHHHHHHcCCCCCcEEEEcCCcEEE-e-eeeeecCCCCCCeeEeEeeEEECCCC
Q 013309 49 SKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFL-I-HPIDISGPCKSRLTLEISGTIVAPKD 126 (445)
Q Consensus 49 ~~~~~~~~v~dfGa~gdg~tDdT~Aiq~Ai~~a~~~~gg~~v~~P~G~~Yl-~-~~l~l~~~~~s~v~l~~~G~i~~~~~ 126 (445)
.++..++|+.||-. .|=-++|.+|+.+ +.+|++|+|-+.. + .++.+ +.+-||.+.|.+...
T Consensus 29 ~~~~~~vni~dy~~-----~dwiasfkqaf~e------~qtvvvpagl~cenint~ifi----p~gktl~v~g~l~gn-- 91 (464)
T PRK10123 29 LPARQSVNINDYNP-----HDWIASFKQAFSE------GQTVVVPAGLVCDNINTGIFI----PPGKTLHILGSLRGN-- 91 (464)
T ss_pred cCCCceeehhhcCc-----ccHHHHHHHHhcc------CcEEEecCccEecccccceEe----CCCCeEEEEEEeecC--
Confidence 34577999999954 3556788888874 6899999993321 1 36667 778888888887642
Q ss_pred cCCcCCCCccccEEEeceeeEEEEeceEEecCCchhhccccccCCCCCCCCCCeEEEEE-eecceEEeceEEEc-CCCce
Q 013309 127 PDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFH-KCKNLKVQNLRVVN-SQQMH 204 (445)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~~nv~I~G~G~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~-~~~nv~I~~v~i~n-s~~~~ 204 (445)
+...++.-.+|+ +.|.+ .++-+.+.+. +-+++.|+++.+.. .|-..
T Consensus 92 -------grgrfvlqdg~q---v~ge~----------------------~g~~hnitldvrgsdc~ikgiamsgfgpvtq 139 (464)
T PRK10123 92 -------GRGRFVLQDGSQ---VTGEE----------------------GGSMHNITLDVRGSDCTIKGLAMSGFGPVTQ 139 (464)
T ss_pred -------CceeEEEecCCE---eecCC----------------------CceeeeEEEeeccCceEEeeeeecccCceeE
Confidence 223344444432 33310 1222233332 33566677766654 23334
Q ss_pred eEEEc-----eecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEec-CCccEEEe--CCceeEEEE-----eeEEc
Q 013309 205 IAFTN-----CLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGT-GDDCISIV--GNSSLIRIR-----NFACG 271 (445)
Q Consensus 205 i~~~~-----~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-gdD~i~i~--~~~~ni~I~-----n~~~~ 271 (445)
|.+.. -+|++|+++++....+.--..|+|-. -+.+.|+||.|+. ..|+|--. -..+||.|+ ++.|.
T Consensus 140 iyiggk~prvmrnl~id~itv~~anyailrqgfhnq-~dgaritn~rfs~lqgdaiewnvaindr~ilisdhvie~inct 218 (464)
T PRK10123 140 IYIGGKNKRVMRNLTIDNLTVSHANYAILRQGFHNQ-IIGANITNCKFSDLQGDAIEWNVAINDRDILISDHVIERINCT 218 (464)
T ss_pred EEEcCCCchhhhccEEccEEEeeccHHHHhhhhhhc-cccceeeccccccccCceEEEEEEecccceeeehheheeeccc
Confidence 44433 46777777777654332233444432 2467788888876 45564221 123566555 44555
Q ss_pred CC---ceEEEeecCCcC-----CCccEEeEEEEcEEEeCCc
Q 013309 272 PG---HGISIGSLGKSN-----SSVRIHDIMVYGALISNTQ 304 (445)
Q Consensus 272 ~~---~gi~igs~g~~~-----~~~~v~nv~i~n~~~~~~~ 304 (445)
++ +||.||-.|..- +...++|..+.|++=.++.
T Consensus 219 ngkinwgigiglagstydn~ype~q~vknfvvanitgs~cr 259 (464)
T PRK10123 219 NGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCR 259 (464)
T ss_pred CCcccceeeeeeccccccCCCchhhhhhhEEEEeccCcChh
Confidence 54 588888766543 3456677777777655554
No 23
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.64 E-value=4.9e-07 Score=83.80 Aligned_cols=124 Identities=14% Similarity=0.229 Sum_probs=81.9
Q ss_pred EEEeecceEEeceEEEcCCCceeEEEceecEEEEeEEEECCCCC-----CCCCcee------eeceecEEEEeeEEecCC
Q 013309 183 TFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAES-----PNTDGIH------ISASRGVEVKNSIVGTGD 251 (445)
Q Consensus 183 ~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~n~~I~~~~~~-----~n~DGi~------~~~s~nv~I~n~~i~~gd 251 (445)
.|..|+++++++++|.+++-.. ..|++++++|+.+.+.... -.-||+. +++++||.|+|+.+.+-|
T Consensus 93 ~fR~~~~i~L~nv~~~~A~Et~---W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD 169 (277)
T PF12541_consen 93 MFRECSNITLENVDIPDADETL---WNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD 169 (277)
T ss_pred HhhcccCcEEEeeEeCCCcccC---EEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc
Confidence 3567888888888888876432 3577777777777542211 1123333 345888888888888765
Q ss_pred ccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCCCccEEeEEEEcEEEeCCcceEEEEEecCCCceeeeEEEEeEEEec
Q 013309 252 DCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKN 331 (445)
Q Consensus 252 D~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~i~~~~g~~g~v~ni~~~ni~~~~ 331 (445)
|++. ++||+|.|+.+.+- =++. .-+|+++.||++.+. .|+- +++|++++|++|.+
T Consensus 170 ---AFWn-~eNVtVyDS~i~GE-YLgW----------~SkNltliNC~I~g~-QpLC---------Y~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 170 ---AFWN-CENVTVYDSVINGE-YLGW----------NSKNLTLINCTIEGT-QPLC---------YCDNLVLENCTMID 224 (277)
T ss_pred ---cccc-CCceEEEcceEeee-EEEE----------EcCCeEEEEeEEecc-CccE---------eecceEEeCcEeec
Confidence 3444 78888888876421 0222 236888888888776 4442 67888888888886
Q ss_pred CCc
Q 013309 332 VSN 334 (445)
Q Consensus 332 ~~~ 334 (445)
..-
T Consensus 225 tdl 227 (277)
T PF12541_consen 225 TDL 227 (277)
T ss_pred cee
Confidence 543
No 24
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.61 E-value=1.9e-06 Score=86.44 Aligned_cols=146 Identities=16% Similarity=0.213 Sum_probs=89.7
Q ss_pred EEEEEeecceEEeceEEEcCC------CceeEEEceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEec-CCcc
Q 013309 181 AITFHKCKNLKVQNLRVVNSQ------QMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGT-GDDC 253 (445)
Q Consensus 181 ~i~~~~~~nv~I~~v~i~ns~------~~~i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-gdD~ 253 (445)
.+.-...++|+|++++|.++. ...|.+..|++++|++++|.... .-||.+..|+ ..|.++.|.. .+..
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~~ 182 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVTA 182 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccce
Confidence 455677899999999999875 34688899999999999999842 2356666665 4444444332 3333
Q ss_pred EEEeCCceeEEEEeeEEcCCc--eEEEeec--CC--------------------cCCC-----ccEEeEEEEcEEEeCCc
Q 013309 254 ISIVGNSSLIRIRNFACGPGH--GISIGSL--GK--------------------SNSS-----VRIHDIMVYGALISNTQ 304 (445)
Q Consensus 254 i~i~~~~~ni~I~n~~~~~~~--gi~igs~--g~--------------------~~~~-----~~v~nv~i~n~~~~~~~ 304 (445)
|.++. +++++|+++++.... ||.+.-. +. .+.+ -...+++|+++++.+++
T Consensus 183 I~lw~-S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r 261 (455)
T TIGR03808 183 IVSFD-ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCD 261 (455)
T ss_pred EEEec-cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccc
Confidence 33333 444444444443321 2332211 00 0000 02357788888888888
Q ss_pred -ceEEEEEecCCCceeeeEEEEeEEEecCCc-cEEEE
Q 013309 305 -NGVRIKTWQGGSGSATNIQFLDVLMKNVSN-PIIID 339 (445)
Q Consensus 305 -~gi~i~~~~g~~g~v~ni~~~ni~~~~~~~-~i~i~ 339 (445)
.||++.+ .+|+.|++++++++.+ +++..
T Consensus 262 ~dgI~~ns-------ss~~~i~~N~~~~~R~~alhym 291 (455)
T TIGR03808 262 YSAVRGNS-------ASNIQITGNSVSDVREVALYSE 291 (455)
T ss_pred cceEEEEc-------ccCcEEECcEeeeeeeeEEEEE
Confidence 6888764 3677788888877776 66544
No 25
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.59 E-value=5.3e-07 Score=78.86 Aligned_cols=138 Identities=20% Similarity=0.284 Sum_probs=96.8
Q ss_pred EEEEeecceEEeceEEEcCCCceeEEEceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCce
Q 013309 182 ITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSS 261 (445)
Q Consensus 182 i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ 261 (445)
|.+....+++|++++|.+....++.+..+..++|++++|.. ...|+.+....+++|++|.+.....++.+. ...
T Consensus 3 i~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~~ 76 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVS-GSS 76 (158)
T ss_dssp EEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECC-S-C
T ss_pred EEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEE-ecC
Confidence 67777888999999999999999999999999999999998 567899998889999999999877666666 588
Q ss_pred eEEEEeeEEcCCc--eEEEeecCCcCCCccEEeEEEEcEEEeCCc-ceEEEEEecCCCceeeeEEEEeEEEecCC-ccEE
Q 013309 262 LIRIRNFACGPGH--GISIGSLGKSNSSVRIHDIMVYGALISNTQ-NGVRIKTWQGGSGSATNIQFLDVLMKNVS-NPII 337 (445)
Q Consensus 262 ni~I~n~~~~~~~--gi~igs~g~~~~~~~v~nv~i~n~~~~~~~-~gi~i~~~~g~~g~v~ni~~~ni~~~~~~-~~i~ 337 (445)
+++|++|.+.... |+.+.. ...+++|++++|.+.. .|+.+.... -.+++++++++.+.. .+|.
T Consensus 77 ~~~i~~~~i~~~~~~gi~~~~--------~~~~~~i~~n~~~~~~~~gi~~~~~~-----~~~~~i~~n~i~~~~~~gi~ 143 (158)
T PF13229_consen 77 NITIENNRIENNGDYGIYISN--------SSSNVTIENNTIHNNGGSGIYLEGGS-----SPNVTIENNTISNNGGNGIY 143 (158)
T ss_dssp S-EEES-EEECSSS-SCE-TC--------EECS-EEES-EEECCTTSSCEEEECC-------S-EEECEEEECESSEEEE
T ss_pred CceecCcEEEcCCCccEEEec--------cCCCEEEEeEEEEeCcceeEEEECCC-----CCeEEEEEEEEEeCcceeEE
Confidence 9999999997643 676631 2457999999998876 688876532 236777777777654 4554
Q ss_pred E
Q 013309 338 I 338 (445)
Q Consensus 338 i 338 (445)
+
T Consensus 144 ~ 144 (158)
T PF13229_consen 144 L 144 (158)
T ss_dssp -
T ss_pred E
Confidence 4
No 26
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.54 E-value=6.1e-05 Score=76.66 Aligned_cols=246 Identities=14% Similarity=0.158 Sum_probs=129.7
Q ss_pred CcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCc------CCcCCCC-----cc---ccEE---EeceeeEEE
Q 013309 87 RTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDP------DVWKGLN-----RR---RWLY---FNRVNHLTV 149 (445)
Q Consensus 87 g~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~------~~~~~~~-----~~---~~i~---~~~~~nv~I 149 (445)
...|||-|| -|.-+++.+.. ..+++.+.+.|.|...... ..|.... .+ .++. ..+.+++.+
T Consensus 256 ~~~VYlApG-AyVkGAf~~~~-~~~nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~ 333 (582)
T PF03718_consen 256 TKWVYLAPG-AYVKGAFEYTD-TQQNVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTC 333 (582)
T ss_dssp --EEEE-TT-EEEES-EEE----SSEEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEE
T ss_pred ccEEEEcCC-cEEEEEEEEcc-CCceEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEE
Confidence 469999999 99999887752 2678888888988764322 1221000 01 2233 345567888
Q ss_pred EeceEEecCCchhhccccccCCCCCCCCCCeEEEEE-eec---ceEEeceEEEcCCCceeE-EEceecEEEEeEEEECCC
Q 013309 150 QGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFH-KCK---NLKVQNLRVVNSQQMHIA-FTNCLRVVISNLEVIAPA 224 (445)
Q Consensus 150 ~G~G~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~-~~~---nv~I~~v~i~ns~~~~i~-~~~~~nv~I~n~~I~~~~ 224 (445)
.|.-+-+ ..+|. +.+. .|. +.+|++.+...+..|.-+ +.-+++-+|+||.+++
T Consensus 334 ~GiTI~~---pP~~S-----------------m~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~nS~i~dcF~h~-- 391 (582)
T PF03718_consen 334 EGITIND---PPFHS-----------------MDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYPNSTIRDCFIHV-- 391 (582)
T ss_dssp ES-EEE-----SS-S-----------------EEEESSSGGGEEEEEEEEEEE---CTT----B--TT-EEEEEEEEE--
T ss_pred EeeEecC---CCcce-----------------EEecCCccccccceeeceeeeeeEEeccCCccccCCCeeeeeEEEe--
Confidence 8733221 22332 4455 343 478999999887655432 3345888999999998
Q ss_pred CCCCCCceeeeceecEEEEeeEEecCCc--cEEEeC---CceeEEEEeeEEc-C---------CceEEEeecCC----cC
Q 013309 225 ESPNTDGIHISASRGVEVKNSIVGTGDD--CISIVG---NSSLIRIRNFACG-P---------GHGISIGSLGK----SN 285 (445)
Q Consensus 225 ~~~n~DGi~~~~s~nv~I~n~~i~~gdD--~i~i~~---~~~ni~I~n~~~~-~---------~~gi~igs~g~----~~ 285 (445)
|.|+|.+.. .++.|++|++...+. .|.++- ...||.|+|+.+- . ..+|..-+-.. +.
T Consensus 392 ---nDD~iKlYh-S~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~ 467 (582)
T PF03718_consen 392 ---NDDAIKLYH-SNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMAST 467 (582)
T ss_dssp ---SS-SEE--S-TTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS
T ss_pred ---cCchhheee-cCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCC
Confidence 678898887 499999999987432 233321 2679999998752 1 22443322111 01
Q ss_pred ----CCccEEeEEEEcEEEeCCcce-EEEEEecCCCceeeeEEEEeEEEecC--C---ccE-EEEeeeCCCCCCCCCCCC
Q 013309 286 ----SSVRIHDIMVYGALISNTQNG-VRIKTWQGGSGSATNIQFLDVLMKNV--S---NPI-IIDQYYCDSPVPCANQTS 354 (445)
Q Consensus 286 ----~~~~v~nv~i~n~~~~~~~~g-i~i~~~~g~~g~v~ni~~~ni~~~~~--~---~~i-~i~~~~~~~~~~~~~~~~ 354 (445)
....+++++|+|+++.+...+ ++|... ..-.|+.++|+.++.- . ... .++..+.... ..
T Consensus 468 ~~adp~~ti~~~~~~nv~~EG~~~~l~ri~pl----qn~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~~------~~ 537 (582)
T PF03718_consen 468 KTADPSTTIRNMTFSNVRCEGMCPCLFRIYPL----QNYDNLVIKNVHFESWNGLDITSQVSGLKAYYNMAN------NK 537 (582)
T ss_dssp --BEEEEEEEEEEEEEEEEECCE-ECEEE--S----EEEEEEEEEEEEECEET-CGCSTT-EEE---CCTTT--------
T ss_pred CCCCcccceeeEEEEeEEEecccceeEEEeec----CCCcceEEEEeecccccCcccccceeeccccccccc------cc
Confidence 123568999999999997664 677643 2456788888888722 1 111 2333222211 11
Q ss_pred cceEEEEEEEeEEEEc
Q 013309 355 AVKVENITFIHIKGTS 370 (445)
Q Consensus 355 ~~~i~ni~f~ni~~~~ 370 (445)
.....+|.|+|.++-+
T Consensus 538 ~~~~~gi~i~N~tVgg 553 (582)
T PF03718_consen 538 QNDTMGIIIENWTVGG 553 (582)
T ss_dssp B--EEEEEEEEEEETT
T ss_pred cccccceEEEeEEECC
Confidence 3457788888887643
No 27
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.51 E-value=4.8e-06 Score=78.59 Aligned_cols=123 Identities=18% Similarity=0.154 Sum_probs=90.3
Q ss_pred EEEEeecceEEeceEEE-cCCCceeEEEceecEEEEeEEEECCC-CCCCCCceee-eceecEEEEeeEEec---------
Q 013309 182 ITFHKCKNLKVQNLRVV-NSQQMHIAFTNCLRVVISNLEVIAPA-ESPNTDGIHI-SASRGVEVKNSIVGT--------- 249 (445)
Q Consensus 182 i~~~~~~nv~I~~v~i~-ns~~~~i~~~~~~nv~I~n~~I~~~~-~~~n~DGi~~-~~s~nv~I~n~~i~~--------- 249 (445)
+.+.-|.|++|.|+--. ---.+++.+.+.+||.|+|++|+... +.++-|+|.+ ..++||+|++|++..
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h 174 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSH 174 (345)
T ss_pred EEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccC
Confidence 55666777777766421 12257788888899999999998633 2234699999 678999999999986
Q ss_pred CCccEEEeCCceeEEEEeeEEcCCc-eEEEeecCCcCCCccEEeEEEEcEEEeCCc
Q 013309 250 GDDCISIVGNSSLIRIRNFACGPGH-GISIGSLGKSNSSVRIHDIMVYGALISNTQ 304 (445)
Q Consensus 250 gdD~i~i~~~~~ni~I~n~~~~~~~-gi~igs~g~~~~~~~v~nv~i~n~~~~~~~ 304 (445)
+|..+.++.++..|+|++|.+.+.. ++-+|+.-.......-.+|++.++.|.+..
T Consensus 175 ~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~ 230 (345)
T COG3866 175 GDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY 230 (345)
T ss_pred CCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccccccc
Confidence 3566888888999999999998754 677877422122344568999999998864
No 28
>smart00656 Amb_all Amb_all domain.
Probab=98.50 E-value=7.7e-06 Score=74.60 Aligned_cols=100 Identities=19% Similarity=0.230 Sum_probs=74.1
Q ss_pred ceeEEEceecEEEEeEEEECCCC--CCCCCceeeeceecEEEEeeEEecC----------CccEEEeCCceeEEEEeeEE
Q 013309 203 MHIAFTNCLRVVISNLEVIAPAE--SPNTDGIHISASRGVEVKNSIVGTG----------DDCISIVGNSSLIRIRNFAC 270 (445)
Q Consensus 203 ~~i~~~~~~nv~I~n~~I~~~~~--~~n~DGi~~~~s~nv~I~n~~i~~g----------dD~i~i~~~~~ni~I~n~~~ 270 (445)
.++.+..++||.|+|++|+.... ..+.|+|.+..+++|.|++|++..+ |..+.++.++.+|+|++|.|
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f 111 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYF 111 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceE
Confidence 34555556777788888776432 2467999999999999999999986 55567888899999999999
Q ss_pred cCCc-eEEEeecCCcCCCccEEeEEEEcEEEeCC
Q 013309 271 GPGH-GISIGSLGKSNSSVRIHDIMVYGALISNT 303 (445)
Q Consensus 271 ~~~~-gi~igs~g~~~~~~~v~nv~i~n~~~~~~ 303 (445)
...+ +.-+|+ +..+......+|++.++.+.++
T Consensus 112 ~~h~~~~liG~-~d~~~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 112 HNHWKVMLLGH-SDSDTDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred ecCCEEEEEcc-CCCccccccceEEEECcEEcCc
Confidence 7654 677776 2112222355899999999775
No 29
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.36 E-value=2.2e-05 Score=74.15 Aligned_cols=134 Identities=22% Similarity=0.223 Sum_probs=83.3
Q ss_pred EEEEEeecceEEeceEEEcCCCceeEEEceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCc
Q 013309 181 AITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNS 260 (445)
Q Consensus 181 ~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~ 260 (445)
.+.+..+++..|++.++.+.. .++.+..+.+++|++++|.. +..||++..+++++|+++.+.....+|.+....
T Consensus 15 Gi~l~~~~~~~i~~n~i~~~~-~gi~~~~s~~~~I~~n~i~~-----~~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~s~ 88 (236)
T PF05048_consen 15 GIYLWNSSNNSIENNTISNSR-DGIYVENSDNNTISNNTISN-----NRYGIHLMGSSNNTIENNTISNNGYGIYLMGSS 88 (236)
T ss_pred cEEEEeCCCCEEEcCEEEeCC-CEEEEEEcCCeEEEeeEEEC-----CCeEEEEEccCCCEEEeEEEEccCCCEEEEcCC
Confidence 366666677777777765543 45566677777777777765 255777777777777777777655677666633
Q ss_pred eeEEEEeeEEcCC-ceEEEeecCCcCCCccEEeEEEEcEEEeCCcceEEEEEecCCCceeeeEEEEeEEEecC-CccEE
Q 013309 261 SLIRIRNFACGPG-HGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNV-SNPII 337 (445)
Q Consensus 261 ~ni~I~n~~~~~~-~gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~i~~~~g~~g~v~ni~~~ni~~~~~-~~~i~ 337 (445)
+.+|+++++... .||.+.. ..+.+|+++++.+...||.+... .+.++++.++.+. ..+|.
T Consensus 89 -~~~I~~N~i~~n~~GI~l~~---------s~~~~I~~N~i~~~~~GI~l~~s-------~~n~I~~N~i~~n~~~Gi~ 150 (236)
T PF05048_consen 89 -NNTISNNTISNNGYGIYLYG---------SSNNTISNNTISNNGYGIYLSSS-------SNNTITGNTISNNTDYGIY 150 (236)
T ss_pred -CcEEECCEecCCCceEEEee---------CCceEEECcEEeCCCEEEEEEeC-------CCCEEECeEEeCCCccceE
Confidence 337777776543 3555532 23466777777666667766531 4555666666655 55655
No 30
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.34 E-value=0.00015 Score=68.29 Aligned_cols=40 Identities=28% Similarity=0.293 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCCcEEEee-----eeeecCCCCCCeeEeEee
Q 013309 72 EAFANAWKKACSFPARTKIVFSAGYTFLIH-----PIDISGPCKSRLTLEISG 119 (445)
Q Consensus 72 ~Aiq~Ai~~a~~~~gg~~v~~P~G~~Yl~~-----~l~l~~~~~s~v~l~~~G 119 (445)
.-|++|++.| +. |.+|++-+| +|.-. ||.+ ++.++|+.+.
T Consensus 16 ~Ti~~A~~~a-~~--g~~i~l~~G-tY~~~~ge~fPi~i----~~gVtl~G~~ 60 (246)
T PF07602_consen 16 KTITKALQAA-QP--GDTIQLAPG-TYSEATGETFPIII----KPGVTLIGNE 60 (246)
T ss_pred HHHHHHHHhC-CC--CCEEEECCc-eeccccCCcccEEe----cCCeEEeecc
Confidence 4699999954 33 689999999 99663 6778 7888888763
No 31
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.34 E-value=2.1e-05 Score=74.27 Aligned_cols=114 Identities=24% Similarity=0.267 Sum_probs=97.5
Q ss_pred EEEEEeecceEEeceEEEcCCCceeEEEceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCc
Q 013309 181 AITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNS 260 (445)
Q Consensus 181 ~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~ 260 (445)
.+.+..+.+++|++.++.+. ..++++..+.+++|+++.+.. +..||.+..+.+.+|+++.|.....+|.+.. +
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~-----n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s 109 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISN-----NGYGIYLMGSSNNTISNNTISNNGYGIYLYG-S 109 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEc-----cCCCEEEEcCCCcEEECCEecCCCceEEEee-C
Confidence 47889999999999999988 889999999999999999998 3489999998878999999998777998876 6
Q ss_pred eeEEEEeeEEcC-CceEEEeecCCcCCCccEEeEEEEcEEEeCC-cceEEEE
Q 013309 261 SLIRIRNFACGP-GHGISIGSLGKSNSSVRIHDIMVYGALISNT-QNGVRIK 310 (445)
Q Consensus 261 ~ni~I~n~~~~~-~~gi~igs~g~~~~~~~v~nv~i~n~~~~~~-~~gi~i~ 310 (445)
.+.+|+++++.+ ..||.+.. ..+.+|++++|.+. ..||.+.
T Consensus 110 ~~~~I~~N~i~~~~~GI~l~~---------s~~n~I~~N~i~~n~~~Gi~~~ 152 (236)
T PF05048_consen 110 SNNTISNNTISNNGYGIYLSS---------SSNNTITGNTISNNTDYGIYFL 152 (236)
T ss_pred CceEEECcEEeCCCEEEEEEe---------CCCCEEECeEEeCCCccceEEe
Confidence 778899999864 45888854 16888999999888 7899843
No 32
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.33 E-value=8.9e-06 Score=71.03 Aligned_cols=129 Identities=22% Similarity=0.267 Sum_probs=86.8
Q ss_pred EEEEEeecceEEeceEEEcCCCceeEEEceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecC-CccEEEeCC
Q 013309 181 AITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTG-DDCISIVGN 259 (445)
Q Consensus 181 ~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~g-dD~i~i~~~ 259 (445)
.+.+..+..++|++.+|.+ ...++.+....+++++++.+.... .|+.+..+..++|++|.+... +.+|.+...
T Consensus 25 gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~~-----~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~ 98 (158)
T PF13229_consen 25 GIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDNG-----SGIYVSGSSNITIENNRIENNGDYGIYISNS 98 (158)
T ss_dssp CEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES-S-----EEEECCS-CS-EEES-EEECSSS-SCE-TCE
T ss_pred EEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEcc-----ceEEEEecCCceecCcEEEcCCCccEEEecc
Confidence 5888888999999999999 788999999999999999999843 788888999999999999984 558888733
Q ss_pred ceeEEEEeeEEcCC--ceEEEeecCCcCCCccEEeEEEEcEEEeCCc-ceEEEEEecCCCceeeeEEEEeEE
Q 013309 260 SSLIRIRNFACGPG--HGISIGSLGKSNSSVRIHDIMVYGALISNTQ-NGVRIKTWQGGSGSATNIQFLDVL 328 (445)
Q Consensus 260 ~~ni~I~n~~~~~~--~gi~igs~g~~~~~~~v~nv~i~n~~~~~~~-~gi~i~~~~g~~g~v~ni~~~ni~ 328 (445)
.++++|++|++... .|+.+... .-.+++|+++++.+.. .|+.+... -.++++.|.+
T Consensus 99 ~~~~~i~~n~~~~~~~~gi~~~~~-------~~~~~~i~~n~i~~~~~~gi~~~~~------~~~~~v~~n~ 157 (158)
T PF13229_consen 99 SSNVTIENNTIHNNGGSGIYLEGG-------SSPNVTIENNTISNNGGNGIYLISG------SSNCTVTNNT 157 (158)
T ss_dssp ECS-EEES-EEECCTTSSCEEEEC-------C--S-EEECEEEECESSEEEE-TT-------SS--EEES-E
T ss_pred CCCEEEEeEEEEeCcceeEEEECC-------CCCeEEEEEEEEEeCcceeEEEECC------CCeEEEECCC
Confidence 67999999999753 57777541 1347889999998865 57766431 1256666554
No 33
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=0.00013 Score=69.10 Aligned_cols=177 Identities=18% Similarity=0.232 Sum_probs=118.5
Q ss_pred eeEeEeeEEECCCCcCCcCCCCccccEEEeceeeEEEEece---EEecCCchhhccccccCCCCCCCCCCeEEEEEeecc
Q 013309 113 LTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGG---TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKN 189 (445)
Q Consensus 113 v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G---~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~n 189 (445)
+.|.+.|+|.++. +++ ..+.+..+.|.+|.|.| ++-|- .|.+....|
T Consensus 77 ~ii~v~Gti~~s~-ps~-------~k~~iki~sNkTivG~g~~a~~~g~----------------------gl~i~~a~N 126 (345)
T COG3866 77 VIIVVKGTITAST-PSD-------KKITIKIGSNKTIVGSGADATLVGG----------------------GLKIRDAGN 126 (345)
T ss_pred EEEEEcceEeccC-CCC-------ceEEEeeccccEEEeeccccEEEec----------------------eEEEEeCCc
Confidence 3555667776552 111 12677778899999954 33332 377778999
Q ss_pred eEEeceEEEcCC-----CceeEE-EceecEEEEeEEEECCCC---CCCCCc-eeee-ceecEEEEeeEEecCCccEEEeC
Q 013309 190 LKVQNLRVVNSQ-----QMHIAF-TNCLRVVISNLEVIAPAE---SPNTDG-IHIS-ASRGVEVKNSIVGTGDDCISIVG 258 (445)
Q Consensus 190 v~I~~v~i~ns~-----~~~i~~-~~~~nv~I~n~~I~~~~~---~~n~DG-i~~~-~s~nv~I~n~~i~~gdD~i~i~~ 258 (445)
|.|+|++|+... ...|.+ ..+.++-|++|++..... ....|| +++. .+..|+|..|.|...|-++-+++
T Consensus 127 VIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~ 206 (345)
T COG3866 127 VIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGS 206 (345)
T ss_pred EEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeecc
Confidence 999999999776 466888 789999999999987322 224555 4454 37889999999998877776665
Q ss_pred C--------ceeEEEEeeEEcCC--c--eEEEeecCCcCCCccEEeEEEEcEEEeCCc-ceEEEEEecCCCceeeeEEEE
Q 013309 259 N--------SSLIRIRNFACGPG--H--GISIGSLGKSNSSVRIHDIMVYGALISNTQ-NGVRIKTWQGGSGSATNIQFL 325 (445)
Q Consensus 259 ~--------~~ni~I~n~~~~~~--~--gi~igs~g~~~~~~~v~nv~i~n~~~~~~~-~gi~i~~~~g~~g~v~ni~~~ 325 (445)
. -.+|++.+|.|.+. + -+++|. +++.|+.+.... .|+.+.. |.---|..|
T Consensus 207 sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~------------vHvyNNYy~~~~~~g~a~~i-----G~~AkiyvE 269 (345)
T COG3866 207 SDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGM------------VHVYNNYYEGNPKFGVAITI-----GTSAKIYVE 269 (345)
T ss_pred CCcccccCCceeEEEeccccccccccCCceEeeE------------EEEeccccccCcccceEEee-----ccceEEEEe
Confidence 2 35699999999764 2 377764 567777776433 4444432 222356666
Q ss_pred eEEEecCCccE
Q 013309 326 DVLMKNVSNPI 336 (445)
Q Consensus 326 ni~~~~~~~~i 336 (445)
++-+++...++
T Consensus 270 ~NyF~~~~~~~ 280 (345)
T COG3866 270 NNYFENGSEGL 280 (345)
T ss_pred cceeccCCCCc
Confidence 66666655543
No 34
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.29 E-value=6.2e-05 Score=70.08 Aligned_cols=31 Identities=26% Similarity=0.613 Sum_probs=21.7
Q ss_pred EEEEEEEeEEEEccCcceEEEEecCCCCeeCeEEEeEEEE
Q 013309 358 VENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLV 397 (445)
Q Consensus 358 i~ni~f~ni~~~~~~~~~~~i~~~~~~~~~~i~~~nv~i~ 397 (445)
=+|++|.|-++.+.+. . | .+++++++|.++.
T Consensus 193 SkNltliNC~I~g~Qp--L---C----Y~~~L~l~nC~~~ 223 (277)
T PF12541_consen 193 SKNLTLINCTIEGTQP--L---C----YCDNLVLENCTMI 223 (277)
T ss_pred cCCeEEEEeEEeccCc--c---E----eecceEEeCcEee
Confidence 3588888888876653 1 3 2678888888776
No 35
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.28 E-value=0.0002 Score=72.01 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHcCCCCCcEEEEcCCcEEEeeeeee
Q 013309 70 DTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDI 105 (445)
Q Consensus 70 dT~Aiq~Ai~~a~~~~gg~~v~~P~G~~Yl~~~l~l 105 (445)
+.++||+|++.| +. |++|+++.| +|.-..|.+
T Consensus 3 s~~~lq~Ai~~a-~p--GD~I~L~~G-ty~~~~i~~ 34 (425)
T PF14592_consen 3 SVAELQSAIDNA-KP--GDTIVLADG-TYKDVEIVF 34 (425)
T ss_dssp SHHHHHHHHHH---T--T-EEEE-SE-EEET-EEEE
T ss_pred CHHHHHHHHHhC-CC--CCEEEECCc-eeecceEEE
Confidence 468999999954 33 799999999 996334444
No 36
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=98.13 E-value=0.00094 Score=64.30 Aligned_cols=86 Identities=15% Similarity=0.131 Sum_probs=68.3
Q ss_pred EeecceEEeceEEEcCCCceeEEEceecEEEEeEEEECCCC---CCCCCceeeeceecEEEEeeEEecCCccEEEeCCce
Q 013309 185 HKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAE---SPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSS 261 (445)
Q Consensus 185 ~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~n~~I~~~~~---~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ 261 (445)
...+.-.|++..+... .+++.+..+.++.|++.+|....+ ....+||++++++...|....|+-+.|||.... ++
T Consensus 104 ~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~-S~ 181 (408)
T COG3420 104 RTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT-SQ 181 (408)
T ss_pred cCcccceEEccccccc-ceEEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcc-cc
Confidence 4456666777666543 478999999999999999987544 346789999999999999999999999998877 66
Q ss_pred eEEEEeeEEcC
Q 013309 262 LIRIRNFACGP 272 (445)
Q Consensus 262 ni~I~n~~~~~ 272 (445)
+-.|+++.+..
T Consensus 182 ~~~~~gnr~~~ 192 (408)
T COG3420 182 HNVFKGNRFRD 192 (408)
T ss_pred cceecccchhh
Confidence 66677766654
No 37
>PLN02480 Probable pectinesterase
Probab=98.02 E-value=0.0019 Score=63.97 Aligned_cols=131 Identities=9% Similarity=0.035 Sum_probs=67.8
Q ss_pred EEeecceEEeceEEEcCCC---------ceeEE-EceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecCCcc
Q 013309 184 FHKCKNLKVQNLRVVNSQQ---------MHIAF-TNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDC 253 (445)
Q Consensus 184 ~~~~~nv~I~~v~i~ns~~---------~~i~~-~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~ 253 (445)
....++++++|++|+|... ..+-+ ..++.+.+.||++....|. +... ...-..+||.|...=|-
T Consensus 128 tV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDT-----Ly~~-~gR~yf~~C~IeG~VDF 201 (343)
T PLN02480 128 TVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNT-----LFDY-KGRHYYHSCYIQGSIDF 201 (343)
T ss_pred EEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccce-----eEeC-CCCEEEEeCEEEeeeeE
Confidence 4456889999999998721 22333 3466777777777764432 2111 22456667777654333
Q ss_pred EEEeCCceeEEEEeeEEcCC-------ce-EEEeecCCcCCCccEEeEEEEcEEEeCCcceEEEEEecCCCceeeeEEEE
Q 013309 254 ISIVGNSSLIRIRNFACGPG-------HG-ISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFL 325 (445)
Q Consensus 254 i~i~~~~~ni~I~n~~~~~~-------~g-i~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~i~~~~g~~g~v~ni~~~ 325 (445)
| -|.....++||++..- .| |.-.+ . ....-....|.||++.+.. -..+. ++. +.-..++|.
T Consensus 202 I---FG~g~a~fe~C~i~s~~~~~~~~~G~ITA~~--r--~~~~~~GfvF~~C~i~g~g-~~yLG-RPW--~~ya~vVf~ 270 (343)
T PLN02480 202 I---FGRGRSIFHNCEIFVIADRRVKIYGSITAHN--R--ESEDNSGFVFIKGKVYGIG-EVYLG-RAK--GAYSRVIFA 270 (343)
T ss_pred E---ccceeEEEEccEEEEecCCCCCCceEEEcCC--C--CCCCCCEEEEECCEEcccC-ceeee-cCC--CCcceEEEE
Confidence 2 2345667777776421 13 22211 1 1122345667777776532 12221 111 234566666
Q ss_pred eEEEec
Q 013309 326 DVLMKN 331 (445)
Q Consensus 326 ni~~~~ 331 (445)
|..|.+
T Consensus 271 ~t~l~~ 276 (343)
T PLN02480 271 KTYLSK 276 (343)
T ss_pred ecccCC
Confidence 666654
No 38
>PLN02634 probable pectinesterase
Probab=98.00 E-value=0.0027 Score=62.97 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEee
Q 013309 70 DTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISG 119 (445)
Q Consensus 70 dT~Aiq~Ai~~a~~~-~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G 119 (445)
|-..||+||+++... ...-+|+|-+| +|.-. |.+.. .+++++|+++|
T Consensus 67 df~TIQaAIda~P~~~~~r~vI~Ik~G-vY~Ek-V~Ip~-~k~~ItL~G~g 114 (359)
T PLN02634 67 DFRSVQDAVDSVPKNNTMSVTIKINAG-FYREK-VVVPA-TKPYITFQGAG 114 (359)
T ss_pred CccCHHHHHhhCcccCCccEEEEEeCc-eEEEE-EEEcC-CCCeEEEEecC
Confidence 577899999965332 22347999999 89643 33310 05677777764
No 39
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.97 E-value=8.4e-05 Score=68.38 Aligned_cols=94 Identities=23% Similarity=0.258 Sum_probs=62.1
Q ss_pred ceecEEEEeEEEEC-----------CCCCCCCCceeeeceecEEEEeeEEecC---------CccEEEeCCceeEEEEee
Q 013309 209 NCLRVVISNLEVIA-----------PAESPNTDGIHISASRGVEVKNSIVGTG---------DDCISIVGNSSLIRIRNF 268 (445)
Q Consensus 209 ~~~nv~I~n~~I~~-----------~~~~~n~DGi~~~~s~nv~I~n~~i~~g---------dD~i~i~~~~~ni~I~n~ 268 (445)
.++||.|+|++|+. .......|+|.+..++||.|++|.+..+ |..+.++.++.+|+|++|
T Consensus 44 ~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n 123 (200)
T PF00544_consen 44 GASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNN 123 (200)
T ss_dssp SCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-
T ss_pred CCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEch
Confidence 55566666665554 1123578999999999999999999866 555888888999999999
Q ss_pred EEcCCc-eEEEeecCCcCCCccEEeEEEEcEEEeCC
Q 013309 269 ACGPGH-GISIGSLGKSNSSVRIHDIMVYGALISNT 303 (445)
Q Consensus 269 ~~~~~~-gi~igs~g~~~~~~~v~nv~i~n~~~~~~ 303 (445)
.+.+.+ +..+|+-........ ..+++.++.+.++
T Consensus 124 ~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 124 IFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred hccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 997643 456666211112223 8999999999764
No 40
>smart00656 Amb_all Amb_all domain.
Probab=97.92 E-value=0.00056 Score=62.40 Aligned_cols=119 Identities=15% Similarity=0.158 Sum_probs=84.3
Q ss_pred EEEEEeecceEEeceEEEcCC------CceeEEEceecEEEEeEEEECCC----CCCCCCce-eee-ceecEEEEeeEEe
Q 013309 181 AITFHKCKNLKVQNLRVVNSQ------QMHIAFTNCLRVVISNLEVIAPA----ESPNTDGI-HIS-ASRGVEVKNSIVG 248 (445)
Q Consensus 181 ~i~~~~~~nv~I~~v~i~ns~------~~~i~~~~~~nv~I~n~~I~~~~----~~~n~DGi-~~~-~s~nv~I~n~~i~ 248 (445)
.|.+..++||.|++++|++.. ..+|.+..+++|.|++|++.... .....||. ++. .+.+++|.+|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 377777999999999999853 35799999999999999998741 11124554 444 4799999999998
Q ss_pred cCCccEEEeCCce-------eEEEEeeEEcCCce--EEEeecCCcCCCccEEeEEEEcEEEeCCc-ceEEE
Q 013309 249 TGDDCISIVGNSS-------LIRIRNFACGPGHG--ISIGSLGKSNSSVRIHDIMVYGALISNTQ-NGVRI 309 (445)
Q Consensus 249 ~gdD~i~i~~~~~-------ni~I~n~~~~~~~g--i~igs~g~~~~~~~v~nv~i~n~~~~~~~-~gi~i 309 (445)
..+-+.-++++.+ +|++.+|.+.+..+ =.+. . . .+++-|+.+.+.. +++..
T Consensus 113 ~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r-------~-g--~~hv~NN~~~n~~~~~~~~ 173 (190)
T smart00656 113 NHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVR-------F-G--YVHVYNNYYTGWTSYAIGG 173 (190)
T ss_pred cCCEEEEEccCCCccccccceEEEECcEEcCcccCCCccc-------C-C--EEEEEeeEEeCcccEeEec
Confidence 7666666665422 69999998865432 2211 1 1 5788888888764 44443
No 41
>PLN02682 pectinesterase family protein
Probab=97.92 E-value=0.0024 Score=63.55 Aligned_cols=48 Identities=27% Similarity=0.286 Sum_probs=30.8
Q ss_pred ccHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEee
Q 013309 69 DDTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISG 119 (445)
Q Consensus 69 DdT~Aiq~Ai~~a~~~-~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G 119 (445)
-|-.-||+||+++... ...-+|+|.+| +|.- .|.+.. .+++++|+++|
T Consensus 80 Gdf~TIQ~AIdavP~~~~~r~vI~Ik~G-~Y~E-kV~Ip~-~k~~Itl~G~g 128 (369)
T PLN02682 80 GDFTTIQAAIDSLPVINLVRVVIKVNAG-TYRE-KVNIPP-LKAYITLEGAG 128 (369)
T ss_pred CCccCHHHHHhhccccCCceEEEEEeCc-eeeE-EEEEec-cCceEEEEecC
Confidence 3567899999955332 22357999999 9963 334410 06677777764
No 42
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.89 E-value=0.00092 Score=62.08 Aligned_cols=123 Identities=23% Similarity=0.336 Sum_probs=81.0
Q ss_pred eEEeceEEEcCC------CceeEEEceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeE
Q 013309 190 LKVQNLRVVNSQ------QMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLI 263 (445)
Q Consensus 190 v~I~~v~i~ns~------~~~i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni 263 (445)
+.|++++|.... ..++.+..++++.|+|+++.. .+.+|+.+..+....+.+.... ..+.+..+..++
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~----~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 166 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIEN----SGGDGIYFNTGTDYRIIGSTHV---SGIFIDNGSNNV 166 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEE---EEEEEESCEEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEc----cCccEEEEEccccCcEeecccc---eeeeeccceeEE
Confidence 447787776543 245888889999999999987 3567787775444444333221 123333345677
Q ss_pred EEEeeEEcCC-ceEEEeecCCcCCCccEEeEEEEcEEEeC-CcceEEEEEecCCCceeeeEEEEeEEEecCCccE
Q 013309 264 RIRNFACGPG-HGISIGSLGKSNSSVRIHDIMVYGALISN-TQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPI 336 (445)
Q Consensus 264 ~I~n~~~~~~-~gi~igs~g~~~~~~~v~nv~i~n~~~~~-~~~gi~i~~~~g~~g~v~ni~~~ni~~~~~~~~i 336 (445)
.+.|+.+..+ .|+..++ ++++++|+.+.+ ...||.+... .+++++|++++++..+|
T Consensus 167 ~~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~~-------~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 167 IVNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEGG-------SNIIISNNTIENCDDGI 224 (225)
T ss_dssp EEECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEEC-------SEEEEEEEEEESSSEEE
T ss_pred EECCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEECC-------eEEEEEeEEEECCccCc
Confidence 7788877654 3543332 699999999988 6678888742 35888999998887665
No 43
>PLN02176 putative pectinesterase
Probab=97.85 E-value=0.0078 Score=59.47 Aligned_cols=47 Identities=13% Similarity=0.132 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHcCCC-CCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEee
Q 013309 70 DTEAFANAWKKACSFP-ARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISG 119 (445)
Q Consensus 70 dT~Aiq~Ai~~a~~~~-gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G 119 (445)
|-..||+||+++.... ..-+|+|.+| +|.-. |.+... +++++|+++|
T Consensus 50 df~TIq~AIdavP~~~~~~~~I~Ik~G-vY~Ek-V~Ip~~-k~~vtl~G~g 97 (340)
T PLN02176 50 YFKTVQSAIDSIPLQNQNWIRILIQNG-IYREK-VTIPKE-KGYIYMQGKG 97 (340)
T ss_pred CccCHHHHHhhchhcCCceEEEEECCc-EEEEE-EEECCC-CccEEEEEcC
Confidence 4778999999653322 2247899999 99643 333111 5677777664
No 44
>PLN02497 probable pectinesterase
Probab=97.82 E-value=0.0024 Score=62.85 Aligned_cols=46 Identities=20% Similarity=0.118 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHcCCC-CCcEEEEcCCcEEEeeeeee-cCCCCCCeeEeEee
Q 013309 70 DTEAFANAWKKACSFP-ARTKIVFSAGYTFLIHPIDI-SGPCKSRLTLEISG 119 (445)
Q Consensus 70 dT~Aiq~Ai~~a~~~~-gg~~v~~P~G~~Yl~~~l~l-~~~~~s~v~l~~~G 119 (445)
|-..||+||+++.... ..-+|+|-+| +|.-. |.+ +. +++++|+++|
T Consensus 43 df~TIq~AIdavP~~~~~~~~I~Ik~G-~Y~Ek-V~Ip~~--k~~itl~G~g 90 (331)
T PLN02497 43 NFTTIQSAIDSVPSNNKHWFCINVKAG-LYREK-VKIPYD--KPFIVLVGAG 90 (331)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCc-EEEEE-EEecCC--CCcEEEEecC
Confidence 4678999999654322 2236999999 99543 333 11 5677777664
No 45
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=97.71 E-value=0.0067 Score=61.34 Aligned_cols=115 Identities=14% Similarity=0.155 Sum_probs=61.3
Q ss_pred EEEEeecceEEeceEEEcCCCc--------eeEE-EceecEEEEeEEEECCCCCCCCC------ceeeeceecEEEEeeE
Q 013309 182 ITFHKCKNLKVQNLRVVNSQQM--------HIAF-TNCLRVVISNLEVIAPAESPNTD------GIHISASRGVEVKNSI 246 (445)
Q Consensus 182 i~~~~~~nv~I~~v~i~ns~~~--------~i~~-~~~~nv~I~n~~I~~~~~~~n~D------Gi~~~~s~nv~I~n~~ 246 (445)
......++++.+|++|+|.... .+-+ ...+.+.+.+|+|....|....+ +........-.+++|.
T Consensus 200 Tv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~Cy 279 (422)
T PRK10531 200 VFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSY 279 (422)
T ss_pred EEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCE
Confidence 4556788999999999997431 2222 24667777888887654422111 1100112246677777
Q ss_pred EecCCccEEEeCCceeEEEEeeEEcC--C----ce-EEEeecCCcCCCccEEeEEEEcEEEeCC
Q 013309 247 VGTGDDCISIVGNSSLIRIRNFACGP--G----HG-ISIGSLGKSNSSVRIHDIMVYGALISNT 303 (445)
Q Consensus 247 i~~gdD~i~i~~~~~ni~I~n~~~~~--~----~g-i~igs~g~~~~~~~v~nv~i~n~~~~~~ 303 (445)
|...=|-| -|.-...++||++.. . .| |.-.+ .....-....|.||+|...
T Consensus 280 IeG~VDFI---FG~g~AvFenC~I~s~~~~~~~~g~ITA~~----t~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 280 IEGDVDFV---FGRGAVVFDNTEFRVVNSRTQQEAYVFAPA----TLPNIYYGFLAINSRFNAS 336 (422)
T ss_pred EeecccEE---ccCceEEEEcCEEEEecCCCCCceEEEecC----CCCCCCCEEEEECCEEecC
Confidence 77544433 233466777776642 1 12 11111 1122334667777777664
No 46
>PLN02665 pectinesterase family protein
Probab=97.54 E-value=0.024 Score=56.67 Aligned_cols=135 Identities=15% Similarity=0.068 Sum_probs=73.0
Q ss_pred EEEEeecceEEeceEEEcCCC---------ceeEE-EceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecCC
Q 013309 182 ITFHKCKNLKVQNLRVVNSQQ---------MHIAF-TNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGD 251 (445)
Q Consensus 182 i~~~~~~nv~I~~v~i~ns~~---------~~i~~-~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gd 251 (445)
-....++++..+|++|+|... ..+-+ ...+...+.||++.+..|. +... ...-..++|.|...=
T Consensus 148 Tv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDT-----L~~~-~gr~yf~~CyIeG~V 221 (366)
T PLN02665 148 TLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDT-----LCDD-KGRHFFKDCYIEGTV 221 (366)
T ss_pred EEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccce-----eEeC-CCCEEEEeeEEeecc
Confidence 345568899999999998631 12222 2356777888888774432 2211 224567777777654
Q ss_pred ccEEEeCCceeEEEEeeEEcC-C---ce-EEEeecCCcCCCccEEeEEEEcEEEeCCcceEEEEEecCCCceeeeEEEEe
Q 013309 252 DCISIVGNSSLIRIRNFACGP-G---HG-ISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLD 326 (445)
Q Consensus 252 D~i~i~~~~~ni~I~n~~~~~-~---~g-i~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~i~~~~g~~g~v~ni~~~n 326 (445)
|-| -|.....++||++.. . .| |.-- +. .....-....|.||++.+....+.+. ++. +.-..++|.+
T Consensus 222 DFI---FG~g~a~fe~C~i~s~~~~~~g~ITA~--~r-~~~~~~~GfvF~~C~itg~~~~~yLG-RpW--~~ysrvVf~~ 292 (366)
T PLN02665 222 DFI---FGSGKSLYLNTELHVVGDGGLRVITAQ--AR-NSEAEDSGFSFVHCKVTGTGTGAYLG-RAW--MSRPRVVFAY 292 (366)
T ss_pred cee---ccccceeeEccEEEEecCCCcEEEEcC--CC-CCCCCCceEEEEeeEEecCCCceeec-CCC--CCcceEEEEc
Confidence 443 233466777777652 1 12 2221 11 11122346678888887753222222 111 1234677777
Q ss_pred EEEec
Q 013309 327 VLMKN 331 (445)
Q Consensus 327 i~~~~ 331 (445)
..|.+
T Consensus 293 t~m~~ 297 (366)
T PLN02665 293 TEMSS 297 (366)
T ss_pred cccCC
Confidence 77765
No 47
>PLN02671 pectinesterase
Probab=97.51 E-value=0.018 Score=57.16 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHcCCC-CCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEee
Q 013309 70 DTEAFANAWKKACSFP-ARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISG 119 (445)
Q Consensus 70 dT~Aiq~Ai~~a~~~~-gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G 119 (445)
|-.-||+||+++.... ..-+|+|-+| +|.=. |.+... +.+++|+++|
T Consensus 70 df~TIQ~AIdavP~~~~~~~~I~Ik~G-vY~Ek-V~I~~~-k~~Itl~G~g 117 (359)
T PLN02671 70 DSLTVQGAVDMVPDYNSQRVKIYILPG-IYREK-VLVPKS-KPYISFIGNE 117 (359)
T ss_pred CccCHHHHHHhchhcCCccEEEEEeCc-eEEEE-EEECCC-CCeEEEEecC
Confidence 4778999999654322 2358999999 99643 333100 5677777654
No 48
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.50 E-value=0.013 Score=58.30 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=91.4
Q ss_pred eEEeecccccCCCCCccHHHHHHHHHHHcCCCCCcEEEEcCCcEEEe-eeeeecCCCCCCeeEeEeeEEECCCCcCCcCC
Q 013309 54 VIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLI-HPIDISGPCKSRLTLEISGTIVAPKDPDVWKG 132 (445)
Q Consensus 54 ~~~v~dfGa~gdg~tDdT~Aiq~Ai~~a~~~~gg~~v~~P~G~~Yl~-~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~ 132 (445)
.=.|+.|-+.++. | +..||+. .++|.+-||.+|.+ +++.+ .+...|++.|+.+....+..
T Consensus 43 FEqvkt~~~~P~e--D----le~~I~~------haKVaL~Pg~~Y~i~~~V~I----~~~cYIiGnGA~V~v~~~~~--- 103 (386)
T PF01696_consen 43 FEQVKTYWMEPGE--D----LEEAIRQ------HAKVALRPGAVYVIRKPVNI----RSCCYIIGNGATVRVNGPDR--- 103 (386)
T ss_pred eEeEEEEEcCCCc--C----HHHHHHh------cCEEEeCCCCEEEEeeeEEe----cceEEEECCCEEEEEeCCCC---
Confidence 3446677787754 2 4556663 57899999999998 59999 66777777764332111100
Q ss_pred CCccccEEEeceeeEEEEeceEEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCC-CceeEEEcee
Q 013309 133 LNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQ-QMHIAFTNCL 211 (445)
Q Consensus 133 ~~~~~~i~~~~~~nv~I~G~G~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~-~~~i~~~~~~ 211 (445)
.+ | .+.- + ...| .+..-.+|++.|+.|...+ .-++.+....
T Consensus 104 ---~~-f--------~v~~------~-----------------~~~P---~V~gM~~VtF~ni~F~~~~~~~g~~f~~~t 145 (386)
T PF01696_consen 104 ---VA-F--------RVCM------Q-----------------SMGP---GVVGMEGVTFVNIRFEGRDTFSGVVFHANT 145 (386)
T ss_pred ---ce-E--------EEEc------C-----------------CCCC---eEeeeeeeEEEEEEEecCCccceeEEEecc
Confidence 00 1 1100 0 1112 1333456677777776655 4556666667
Q ss_pred cEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCc-eEE
Q 013309 212 RVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGH-GIS 277 (445)
Q Consensus 212 nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~-gi~ 277 (445)
++++.+|.+.+. +...++.+ ....|++|.|....-+|.- .+...+.|++|.|+.+. |+.
T Consensus 146 ~~~~hgC~F~gf----~g~cl~~~--~~~~VrGC~F~~C~~gi~~-~~~~~lsVk~C~FekC~igi~ 205 (386)
T PF01696_consen 146 NTLFHGCSFFGF----HGTCLESW--AGGEVRGCTFYGCWKGIVS-RGKSKLSVKKCVFEKCVIGIV 205 (386)
T ss_pred eEEEEeeEEecC----cceeEEEc--CCcEEeeeEEEEEEEEeec-CCcceEEeeheeeeheEEEEE
Confidence 777777777762 23334333 4677777777654444422 23556777777776654 453
No 49
>PLN02773 pectinesterase
Probab=97.44 E-value=0.025 Score=55.53 Aligned_cols=80 Identities=11% Similarity=0.132 Sum_probs=45.2
Q ss_pred EEEeecceEEeceEEEcCCCc----eeEE-EceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecCCccEEEe
Q 013309 183 TFHKCKNLKVQNLRVVNSQQM----HIAF-TNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIV 257 (445)
Q Consensus 183 ~~~~~~nv~I~~v~i~ns~~~----~i~~-~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~ 257 (445)
.+..++++..+|++|+|.... .+-+ ...+.+.+.+|++.+..|. +-... ..-.++||.|...=|-| +
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDT-----L~~~~-gr~yf~~c~IeG~VDFI-F- 168 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDT-----LYLHY-GKQYLRDCYIEGSVDFI-F- 168 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccce-----eEeCC-CCEEEEeeEEeecccEE-e-
Confidence 445688999999999987321 1222 2356667777777764332 22221 24566666666544433 1
Q ss_pred CCceeEEEEeeEEc
Q 013309 258 GNSSLIRIRNFACG 271 (445)
Q Consensus 258 ~~~~ni~I~n~~~~ 271 (445)
|.....+++|++.
T Consensus 169 -G~g~a~Fe~c~i~ 181 (317)
T PLN02773 169 -GNSTALLEHCHIH 181 (317)
T ss_pred -eccEEEEEeeEEE
Confidence 2345666676664
No 50
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.41 E-value=0.019 Score=60.67 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHcCC--CCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEee
Q 013309 70 DTEAFANAWKKACSF--PARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISG 119 (445)
Q Consensus 70 dT~Aiq~Ai~~a~~~--~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G 119 (445)
|-.-||+||+++... .+.-+|+|.+| +|.- .|.+... +.+++|+++|
T Consensus 252 ~f~TIq~Av~a~p~~~~~~r~vI~vk~G-vY~E-~V~i~~~-k~~v~l~G~g 300 (553)
T PLN02708 252 CYKTVQEAVNAAPDNNGDRKFVIRIKEG-VYEE-TVRVPLE-KKNVVFLGDG 300 (553)
T ss_pred CccCHHHHHHhhhhccCCccEEEEEeCc-eEEe-eeeecCC-CccEEEEecC
Confidence 467899999966542 23358999999 9964 3333111 5566766664
No 51
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.39 E-value=0.03 Score=58.44 Aligned_cols=205 Identities=15% Similarity=0.180 Sum_probs=105.5
Q ss_pred ccHHHHHHHHHHHcC--CCCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCcCCcCCCCccccEEEeceee
Q 013309 69 DDTEAFANAWKKACS--FPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNH 146 (445)
Q Consensus 69 DdT~Aiq~Ai~~a~~--~~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~n 146 (445)
-|-.-||+||+++.. ....-+|+|.+| +|.- .|.+.. .+++++|+++|. ++
T Consensus 235 G~f~TIq~AI~a~~~~~~~~r~vI~Ik~G-vY~E-~V~I~~-~k~nItl~G~g~------------------------~~ 287 (529)
T PLN02170 235 GTHKTIGEALLSTSLESGGGRTVIYLKAG-TYHE-NLNIPT-KQKNVMLVGDGK------------------------GK 287 (529)
T ss_pred CchhhHHHHHHhcccccCCceEEEEEeCC-eeEE-EEecCC-CCceEEEEEcCC------------------------CC
Confidence 347789999995432 223468999999 8963 333311 056777776641 11
Q ss_pred EEEEeceEEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCC----ceeEE-EceecEEEEeEEEE
Q 013309 147 LTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQ----MHIAF-TNCLRVVISNLEVI 221 (445)
Q Consensus 147 v~I~G~G~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~----~~i~~-~~~~nv~I~n~~I~ 221 (445)
..|+|... .+.| |. .-...-.....+++..+|++|+|... ..+-+ ..++...+.+|++.
T Consensus 288 TiIt~~~~-~~~g---~~------------T~~SaTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~ 351 (529)
T PLN02170 288 TVIVGSRS-NRGG---WT------------TYQTATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVE 351 (529)
T ss_pred eEEEeCCc-CCCC---Cc------------cccceEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEe
Confidence 22222100 0001 10 00112344567889999999998742 12222 24667778888887
Q ss_pred CCCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCC----ceEEEeecCCcCCCccEEeEEEEc
Q 013309 222 APAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPG----HGISIGSLGKSNSSVRIHDIMVYG 297 (445)
Q Consensus 222 ~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~----~gi~igs~g~~~~~~~v~nv~i~n 297 (445)
+..|. +.... ..-..++|.|...=|-| -|.....++||.+..- ..-.|-..|. .+...-....|.|
T Consensus 352 GyQDT-----Ly~~~-~Rqyy~~C~I~GtVDFI---FG~a~avFq~C~I~~~~~~~~~g~ITAq~R-~~~~~~~Gfvf~~ 421 (529)
T PLN02170 352 GYQDS-----LYTHS-KRQFYRETDITGTVDFI---FGNSAVVFQSCNIAARKPSGDRNYVTAQGR-SDPNQNTGISIHN 421 (529)
T ss_pred ccCCc-----ceeCC-CCEEEEeeEEcccccee---cccceEEEeccEEEEecCCCCceEEEecCC-CCCCCCceEEEEe
Confidence 74432 32222 23466778777644433 2345677777776421 1111111111 1222335677888
Q ss_pred EEEeCCcceEEEEEecCCC-ceeeeEEEEeEEEec
Q 013309 298 ALISNTQNGVRIKTWQGGS-GSATNIQFLDVLMKN 331 (445)
Q Consensus 298 ~~~~~~~~gi~i~~~~g~~-g~v~ni~~~ni~~~~ 331 (445)
|++.+.. +.+-|+. ..-..++|.+..|.+
T Consensus 422 C~it~~~-----~~yLGRPW~~ysrvVf~~t~l~~ 451 (529)
T PLN02170 422 CRITAES-----MTYLGRPWKEYSRTVVMQSFIDG 451 (529)
T ss_pred eEEecCC-----ceeeeCCCCCCceEEEEecccCC
Confidence 8887653 1221221 123566676766665
No 52
>PLN02304 probable pectinesterase
Probab=97.34 E-value=0.034 Score=55.60 Aligned_cols=47 Identities=17% Similarity=0.303 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEee
Q 013309 70 DTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISG 119 (445)
Q Consensus 70 dT~Aiq~Ai~~a~~~-~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G 119 (445)
|-.-||+||+++.+. ...-+|+|.+| +|.- .|.+.. .+++++|+++|
T Consensus 86 df~TIQ~AIdavP~~~~~r~vI~Ik~G-vY~E-kV~Ip~-~K~~Itl~G~g 133 (379)
T PLN02304 86 NFTTVQSAVDAVGNFSQKRNVIWINSG-IYYE-KVTVPK-TKPNITFQGQG 133 (379)
T ss_pred CccCHHHHHhhCcccCCCcEEEEEeCe-EeEE-EEEECC-CCCcEEEEecC
Confidence 466899999964332 22357999999 9963 333310 06778887764
No 53
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.28 E-value=0.027 Score=59.23 Aligned_cols=205 Identities=13% Similarity=0.120 Sum_probs=102.7
Q ss_pred cHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCcCCcCCCCccccEEEeceeeEE
Q 013309 70 DTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLT 148 (445)
Q Consensus 70 dT~Aiq~Ai~~a~~~-~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~nv~ 148 (445)
|-.-||+||+++... .+.-+|+|.+| +|.-.-..-+. +.+++|+++|. +...
T Consensus 243 ~f~TIq~Av~a~p~~~~~r~vI~Vk~G-vY~E~V~I~~~--k~~i~l~G~g~------------------------~~ti 295 (537)
T PLN02506 243 HYRTITEAINEAPNHSNRRYIIYVKKG-VYKENIDMKKK--KTNIMLVGDGI------------------------GQTV 295 (537)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCC-eeeEEEeccCC--CceEEEEEcCC------------------------CCeE
Confidence 467899999965432 23458999999 99544111111 45666666541 1111
Q ss_pred EEeceEEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCC----ceeEE-EceecEEEEeEEEECC
Q 013309 149 VQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQ----MHIAF-TNCLRVVISNLEVIAP 223 (445)
Q Consensus 149 I~G~G~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~----~~i~~-~~~~nv~I~n~~I~~~ 223 (445)
|++.... ..| |. ..+ ..-.....+++..+|++|+|... ..+-+ ...+.+.+.+|.|.+.
T Consensus 296 It~~~~~-~~g---~~-----------T~~-saT~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~ 359 (537)
T PLN02506 296 VTGNRNF-MQG---WT-----------TFR-TATVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGY 359 (537)
T ss_pred EEeCccc-cCC---CC-----------ccc-ceEEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecc
Confidence 2221000 001 10 011 12344567889999999998742 12222 2366777778877774
Q ss_pred CCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCC-----ceEEEeecCCcCCCccEEeEEEEcE
Q 013309 224 AESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPG-----HGISIGSLGKSNSSVRIHDIMVYGA 298 (445)
Q Consensus 224 ~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~-----~gi~igs~g~~~~~~~v~nv~i~n~ 298 (445)
.|. +.... ..-..++|.|...=|-| -|.....++||.+..- ..-.|-..|. .....-..+.|.||
T Consensus 360 QDT-----Ly~~~-~rqyy~~C~I~GtVDFI---FG~a~avfq~C~i~~r~~~~~~~~~iTA~~r-~~~~~~~G~vf~~c 429 (537)
T PLN02506 360 QDT-----LYAHS-LRQFYRECEIYGTIDFI---FGNGAAVLQNCKIYTRVPLPLQKVTITAQGR-KSPHQSTGFSIQDS 429 (537)
T ss_pred ccc-----ceecC-CceEEEeeEEecccceE---ccCceeEEeccEEEEccCCCCCCceEEccCC-CCCCCCcEEEEEcC
Confidence 432 22222 23466777777544433 2335677777776421 1111111121 11223356777777
Q ss_pred EEeCCcceEEEEEecCCCceeeeEEEEeEEEec
Q 013309 299 LISNTQNGVRIKTWQGGSGSATNIQFLDVLMKN 331 (445)
Q Consensus 299 ~~~~~~~gi~i~~~~g~~g~v~ni~~~ni~~~~ 331 (445)
++.... ...+. ++. +.-..++|-+..|.+
T Consensus 430 ~i~~~~-~~yLG-RPW--~~~sr~v~~~t~l~~ 458 (537)
T PLN02506 430 YVLATQ-PTYLG-RPW--KQYSRTVFMNTYMSQ 458 (537)
T ss_pred EEccCC-ceEEe-cCC--CCCceEEEEecCCCC
Confidence 776532 12221 111 223566666666665
No 54
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.26 E-value=0.028 Score=59.21 Aligned_cols=210 Identities=13% Similarity=0.128 Sum_probs=111.6
Q ss_pred ccHHHHHHHHHHHcC---CCCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCcCCcCCCCccccEEEecee
Q 013309 69 DDTEAFANAWKKACS---FPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVN 145 (445)
Q Consensus 69 DdT~Aiq~Ai~~a~~---~~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~ 145 (445)
-|-.-||+||+++.. ..+.-+|+|.+| +|.-. |.+.. .+++++|+++|. +
T Consensus 233 G~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G-~Y~E~-V~i~~-~k~~i~l~G~g~------------------------~ 285 (539)
T PLN02995 233 GHFNTVQAAIDVAGRRKVTSGRFVIYVKRG-IYQEN-INVRL-NNDDIMLVGDGM------------------------R 285 (539)
T ss_pred CCccCHHHHHHhcccccCCCceEEEEEeCC-EeEEE-EEecC-CCCcEEEEEcCC------------------------C
Confidence 356789999996542 223467999999 99654 33310 156777777751 1
Q ss_pred eEEEEeceEEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCC----ceeEE-EceecEEEEeEEE
Q 013309 146 HLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQ----MHIAF-TNCLRVVISNLEV 220 (445)
Q Consensus 146 nv~I~G~G~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~----~~i~~-~~~~nv~I~n~~I 220 (445)
...|+|.-.. +.+ |. ..+ ..-.....+++..+|++|+|... ..+-+ ..++...+.+|.|
T Consensus 286 ~TvIt~~~~~-~~~---~~-----------T~~-SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~ 349 (539)
T PLN02995 286 STIITGGRSV-KGG---YT-----------TYN-SATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSI 349 (539)
T ss_pred CeEEEeCCcc-CCC---Cc-----------ccc-eEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceE
Confidence 1111111000 000 00 001 12233457888889999998642 22333 2467788888888
Q ss_pred ECCCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCC------ceEEEeecCCcCCCccEEeEE
Q 013309 221 IAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPG------HGISIGSLGKSNSSVRIHDIM 294 (445)
Q Consensus 221 ~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~------~gi~igs~g~~~~~~~v~nv~ 294 (445)
.+..|.... .. ..-..++|.|...=|-| -|.....++||++..- .| .|-..|. .....-..+.
T Consensus 350 ~G~QDTLy~-----~~-~Rqyy~~C~I~GtVDFI---FG~a~avf~~C~i~~~~~~~~~~~-~iTA~~r-~~~~~~~G~v 418 (539)
T PLN02995 350 EGYQDTLMV-----HS-QRQFYRECYIYGTVDFI---FGNAAAVFQNCIILPRRPLKGQAN-VITAQGR-ADPFQNTGIS 418 (539)
T ss_pred ecccchhcc-----CC-CceEEEeeEEeeccceE---ecccceEEeccEEEEecCCCCCcc-eEecCCC-CCCCCCceEE
Confidence 875543222 22 23577888887654433 2345777888877421 12 1211121 1222346788
Q ss_pred EEcEEEeCCcceE----EEEEecCCC-ceeeeEEEEeEEEecC
Q 013309 295 VYGALISNTQNGV----RIKTWQGGS-GSATNIQFLDVLMKNV 332 (445)
Q Consensus 295 i~n~~~~~~~~gi----~i~~~~g~~-g~v~ni~~~ni~~~~~ 332 (445)
|.||++....... ..+.+-|+. ..-..++|-+..|.+.
T Consensus 419 f~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t~~~~~ 461 (539)
T PLN02995 419 IHNSRILPAPDLKPVVRTVKTYMGRPWMKFSRTVVLQTYLDNV 461 (539)
T ss_pred EEeeEEecCCcccccccccceeccCCCCCCcceEEEeccccCc
Confidence 8888887753211 112222322 2345677777777654
No 55
>PLN02432 putative pectinesterase
Probab=97.23 E-value=0.072 Score=51.69 Aligned_cols=46 Identities=17% Similarity=0.101 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHcCCC-CCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEe
Q 013309 70 DTEAFANAWKKACSFP-ARTKIVFSAGYTFLIHPIDISGPCKSRLTLEIS 118 (445)
Q Consensus 70 dT~Aiq~Ai~~a~~~~-gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~ 118 (445)
|-.-||+||+++.... ..-+|+|.+| +|.= .|.+... +++++|+++
T Consensus 22 ~f~TIq~Aida~p~~~~~~~~I~I~~G-~Y~E-~V~ip~~-k~~itl~G~ 68 (293)
T PLN02432 22 DFRKIQDAIDAVPSNNSQLVFIWVKPG-IYRE-KVVVPAD-KPFITLSGT 68 (293)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCc-eeEE-EEEEecc-CceEEEEEc
Confidence 4778999999654322 2357999999 9943 3333100 456666655
No 56
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.21 E-value=0.03 Score=59.37 Aligned_cols=206 Identities=16% Similarity=0.164 Sum_probs=110.7
Q ss_pred cHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCcCCcCCCCccccEEEeceeeEE
Q 013309 70 DTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLT 148 (445)
Q Consensus 70 dT~Aiq~Ai~~a~~~-~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~nv~ 148 (445)
|-.-||+||+++... ...-+|+|.+| +|.- .+.+..+ +.+++|+++|. +...
T Consensus 269 ~f~tI~~Av~a~p~~~~~~~vI~ik~G-vY~E-~V~i~~~-k~~i~~~G~g~------------------------~~ti 321 (565)
T PLN02468 269 KYKTISEALKDVPEKSEKRTIIYVKKG-VYFE-NVRVEKK-KWNVVMVGDGM------------------------SKTI 321 (565)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCC-ceEE-EEEecCC-CCeEEEEecCC------------------------CCCE
Confidence 457899999965432 23458999999 9963 3444111 45677776641 1111
Q ss_pred EEece-EEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCCc----eeEE-EceecEEEEeEEEEC
Q 013309 149 VQGGG-TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQM----HIAF-TNCLRVVISNLEVIA 222 (445)
Q Consensus 149 I~G~G-~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~~~nv~I~n~~I~~ 222 (445)
|.|.. ..||.. . | + ..-.....+++..+|++|+|.... .+-+ ..++...+.+|.|.+
T Consensus 322 It~~~~~~dg~~-t-~--------------~-saT~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G 384 (565)
T PLN02468 322 VSGSLNFVDGTP-T-F--------------S-TATFAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDA 384 (565)
T ss_pred EEeCCccCCCCC-c-c--------------c-eeeeeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEe
Confidence 22210 011111 0 0 0 122334568899999999986422 2222 346778888888887
Q ss_pred CCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcC-----C-ce-EEEeecCCcCCCccEEeEEE
Q 013309 223 PAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP-----G-HG-ISIGSLGKSNSSVRIHDIMV 295 (445)
Q Consensus 223 ~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~-----~-~g-i~igs~g~~~~~~~v~nv~i 295 (445)
..|. +.... ..-..++|.|...=|-| -|...+.++||.+.. + .+ |.- .|. .+...-..+.|
T Consensus 385 ~QDT-----Ly~~~-~rq~y~~C~I~GtvDFI---FG~a~avfq~c~i~~~~~~~~~~~~iTA--~~r-~~~~~~~G~vf 452 (565)
T PLN02468 385 FQDT-----LYAHA-QRQFYRECNIYGTVDFI---FGNSAVVFQNCNILPRRPMKGQQNTITA--QGR-TDPNQNTGISI 452 (565)
T ss_pred ccch-----hccCC-CceEEEeeEEeccccee---eccceEEEeccEEEEecCCCCCCceEEe--cCC-CCCCCCceEEE
Confidence 5443 22222 23457888887654433 334677888887742 1 12 222 121 12234457888
Q ss_pred EcEEEeCCcceEEEEEecCCC-ceeeeEEEEeEEEec
Q 013309 296 YGALISNTQNGVRIKTWQGGS-GSATNIQFLDVLMKN 331 (445)
Q Consensus 296 ~n~~~~~~~~gi~i~~~~g~~-g~v~ni~~~ni~~~~ 331 (445)
.||++......-..+++-|+. ..-..++|.+..|.+
T Consensus 453 ~~c~i~~~~~~~~~~~yLGRPW~~~sr~v~~~s~~~~ 489 (565)
T PLN02468 453 QNCTILPLGDLTSVKTFLGRPWKNYSTTVIMHSMMGS 489 (565)
T ss_pred EccEEecCCCccccceeeecCCCCCceEEEEecccCC
Confidence 888888753211222332322 234456777777665
No 57
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.21 E-value=0.066 Score=56.03 Aligned_cols=149 Identities=15% Similarity=0.164 Sum_probs=79.1
Q ss_pred cHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCcCCcCCCCccccEEEeceeeEE
Q 013309 70 DTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLT 148 (445)
Q Consensus 70 dT~Aiq~Ai~~a~~~-~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~nv~ 148 (445)
|-..||+||+++... ...-+|+|-+| +|. ..|.+... +.+++|+++|. +...
T Consensus 229 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~-E~V~I~~~-k~~itl~G~g~------------------------~~Ti 281 (530)
T PLN02933 229 NFTTINEAVSAAPNSSETRFIIYIKGG-EYF-ENVELPKK-KTMIMFIGDGI------------------------GKTV 281 (530)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEcCc-eEE-EEEEecCC-CceEEEEEcCC------------------------CCcE
Confidence 467899999965432 22357999999 997 44444211 55677776641 1111
Q ss_pred EEece-EEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCC----ceeEEE-ceecEEEEeEEEEC
Q 013309 149 VQGGG-TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQ----MHIAFT-NCLRVVISNLEVIA 222 (445)
Q Consensus 149 I~G~G-~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~----~~i~~~-~~~nv~I~n~~I~~ 222 (445)
|++.. ..|| |. ..+ .+-.....+++..+|++|+|... ..+-+. .++...+.+|.|.+
T Consensus 282 It~~~~~~dg-----~~-----------T~~-SaT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G 344 (530)
T PLN02933 282 IKANRSRIDG-----WS-----------TFQ-TATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDG 344 (530)
T ss_pred EEeCCccCCC-----Cc-----------ccc-ceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEe
Confidence 22110 0111 11 001 12334556788889999988642 223322 35667777777776
Q ss_pred CCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEc
Q 013309 223 PAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACG 271 (445)
Q Consensus 223 ~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~ 271 (445)
..|. +.... ..-..++|.|...=|-| -|.....++||.+.
T Consensus 345 ~QDT-----Ly~~~-~Rqyy~~C~IeGtVDFI---FG~a~avFq~C~i~ 384 (530)
T PLN02933 345 YQDT-----LYVHS-AKQFYRECDIYGTIDFI---FGNAAVVFQNCSLY 384 (530)
T ss_pred cccc-----cccCC-CceEEEeeEEeccccee---ccCceEEEeccEEE
Confidence 4432 22222 23466777776543332 23345666777663
No 58
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.16 E-value=0.055 Score=56.60 Aligned_cols=208 Identities=13% Similarity=0.161 Sum_probs=108.5
Q ss_pred ccHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCcCCcCCCCccccEEEeceeeE
Q 013309 69 DDTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHL 147 (445)
Q Consensus 69 DdT~Aiq~Ai~~a~~~-~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~nv 147 (445)
-|-..||+||+++... ...-+|+|.+| +|.- .|.+... +.+++|+++|. +..
T Consensus 216 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~~-k~~i~l~G~g~------------------------~~T 268 (520)
T PLN02201 216 GNFTTIMDAVLAAPDYSTKRYVIYIKKG-VYLE-NVEIKKK-KWNIMMVGDGI------------------------DAT 268 (520)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCc-eeEE-EEEecCC-CceEEEEecCC------------------------CCc
Confidence 3577899999965432 22458999999 9963 3344111 45677776641 111
Q ss_pred EEEece-EEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCC----ceeEE-EceecEEEEeEEEE
Q 013309 148 TVQGGG-TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQ----MHIAF-TNCLRVVISNLEVI 221 (445)
Q Consensus 148 ~I~G~G-~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~----~~i~~-~~~~nv~I~n~~I~ 221 (445)
.|++.. ..|| |. ..+ ..-.....+++..+|++|+|... ..+-+ ..++...+.+|.|.
T Consensus 269 iIt~~~~~~~g-----~~-----------T~~-SAT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~ 331 (520)
T PLN02201 269 VITGNRSFIDG-----WT-----------TFR-SATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMR 331 (520)
T ss_pred EEEeCCccCCC-----Cc-----------ccc-eEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeee
Confidence 122210 0111 10 001 12334557888899999998742 22333 23667778888888
Q ss_pred CCCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcC-----C-ce-EEEeecCCcCCCccEEeEE
Q 013309 222 APAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP-----G-HG-ISIGSLGKSNSSVRIHDIM 294 (445)
Q Consensus 222 ~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~-----~-~g-i~igs~g~~~~~~~v~nv~ 294 (445)
+..| -+..... .-..++|.|...=|-| -|.....++||++.. + .| |.-- +. .+...-....
T Consensus 332 G~QD-----TLy~~~~-Rqyy~~C~I~GtVDFI---FG~a~avf~~C~i~~~~~~~~~~~~iTAq--~r-~~~~~~~Gfv 399 (520)
T PLN02201 332 GYQD-----TLYTHTM-RQFYRECRITGTVDFI---FGDATAVFQNCQILAKKGLPNQKNTITAQ--GR-KDPNQPTGFS 399 (520)
T ss_pred ccCC-----eeEeCCC-CEEEEeeEEeecccEE---ecCceEEEEccEEEEecCCCCCCceEEec--CC-CCCCCCcEEE
Confidence 7443 2333322 3466778887654433 234567788887642 1 12 3221 11 1223345677
Q ss_pred EEcEEEeCCcceEE----EEEecCCC-ceeeeEEEEeEEEecC
Q 013309 295 VYGALISNTQNGVR----IKTWQGGS-GSATNIQFLDVLMKNV 332 (445)
Q Consensus 295 i~n~~~~~~~~gi~----i~~~~g~~-g~v~ni~~~ni~~~~~ 332 (445)
|.||++........ .+.+-|+. +.-..++|.+..|.+.
T Consensus 400 f~~C~it~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t~l~~~ 442 (520)
T PLN02201 400 IQFSNISADTDLLPYLNTTATYLGRPWKLYSRTVFMQNYMSDA 442 (520)
T ss_pred EEeeEEecCccccccccccceEeecCCCCCceEEEEecCcCCe
Confidence 88888876432110 11222221 2345677777777653
No 59
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.14 E-value=0.058 Score=57.49 Aligned_cols=206 Identities=11% Similarity=0.131 Sum_probs=112.5
Q ss_pred cHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCcCCcCCCCccccEEEeceeeEE
Q 013309 70 DTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLT 148 (445)
Q Consensus 70 dT~Aiq~Ai~~a~~~-~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~nv~ 148 (445)
|-..||+||+++... ...-+|+|.+| +|.-. |.+... +.+++|+++|. +...
T Consensus 296 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~-k~~i~l~G~g~------------------------~~Ti 348 (596)
T PLN02745 296 NFTTISDALAAMPAKYEGRYVIYVKQG-IYDET-VTVDKK-MVNVTMYGDGS------------------------QKTI 348 (596)
T ss_pred CcccHHHHHHhccccCCceEEEEEeCC-eeEEE-EEEcCC-CceEEEEecCC------------------------CceE
Confidence 567899999955432 22357999999 99643 434111 45777776641 1111
Q ss_pred EEeceE-EecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCC----ceeEE-EceecEEEEeEEEEC
Q 013309 149 VQGGGT-INGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQ----MHIAF-TNCLRVVISNLEVIA 222 (445)
Q Consensus 149 I~G~G~-IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~----~~i~~-~~~~nv~I~n~~I~~ 222 (445)
|+|... -|| |. ..+ ..-.....+++..+|++|+|... ..+-+ ..++...+.+|.|.+
T Consensus 349 It~~~~~~~g-----~~-----------T~~-saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G 411 (596)
T PLN02745 349 VTGNKNFADG-----VR-----------TFR-TATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEG 411 (596)
T ss_pred EEECCcccCC-----Cc-----------cee-eEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEee
Confidence 111100 001 00 001 12333467889999999998642 22322 347788899999988
Q ss_pred CCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCC------ce-EEEeecCCcCCCccEEeEEE
Q 013309 223 PAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPG------HG-ISIGSLGKSNSSVRIHDIMV 295 (445)
Q Consensus 223 ~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~------~g-i~igs~g~~~~~~~v~nv~i 295 (445)
..|. +... ...-..++|.|...=|-| -|.....++||.+..- .| |.- .|. .+...-..+.|
T Consensus 412 ~QDT-----Ly~~-~~Rqyy~~C~I~GtVDFI---FG~a~avf~~C~i~~~~~~~~~~~~iTA--q~r-~~~~~~~Gfvf 479 (596)
T PLN02745 412 YQDT-----LYAQ-THRQFYRSCVITGTIDFI---FGDAAAIFQNCLIFVRKPLPNQQNTVTA--QGR-VDKFETTGIVL 479 (596)
T ss_pred cccc-----cccC-CCcEEEEeeEEEeeccEE---ecceeEEEEecEEEEecCCCCCCceEEe--cCC-CCCCCCceEEE
Confidence 5543 2222 234677888888654433 2346788888887521 12 222 111 12233467888
Q ss_pred EcEEEeCCcceE----EEEEecCCC-ceeeeEEEEeEEEec
Q 013309 296 YGALISNTQNGV----RIKTWQGGS-GSATNIQFLDVLMKN 331 (445)
Q Consensus 296 ~n~~~~~~~~gi----~i~~~~g~~-g~v~ni~~~ni~~~~ 331 (445)
.||++....... ..+++-|+. ..-..++|.+..|.+
T Consensus 480 ~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~s~l~~ 520 (596)
T PLN02745 480 QNCRIAPDEDLKPVKTEVKSYLGRPWKEFSRTIVMESTIED 520 (596)
T ss_pred EeeEEecCccccccccccceeccCCCCCCccEEEEecccCC
Confidence 899887753211 112232332 234567777777765
No 60
>PLN02197 pectinesterase
Probab=97.13 E-value=0.056 Score=57.38 Aligned_cols=210 Identities=13% Similarity=0.105 Sum_probs=111.3
Q ss_pred cHHHHHHHHHHHcCCC-CCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCcCCcCCCCccccEEEeceeeEE
Q 013309 70 DTEAFANAWKKACSFP-ARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLT 148 (445)
Q Consensus 70 dT~Aiq~Ai~~a~~~~-gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~nv~ 148 (445)
|-.-||+||+++.... ..-+|+|.+| +|.=. +.+.. .+.+++|+++|. +...
T Consensus 286 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~-~k~ni~l~G~g~------------------------~~Ti 338 (588)
T PLN02197 286 QFKTISQAVMACPDKNPGRCIIHIKAG-IYNEQ-VTIPK-KKNNIFMFGDGA------------------------RKTV 338 (588)
T ss_pred CcCCHHHHHHhccccCCceEEEEEeCc-eEEEE-EEccC-CCceEEEEEcCC------------------------CCeE
Confidence 4678999999654432 2347999999 89643 33311 045677776641 1111
Q ss_pred EEeceE---EecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCC----ceeEE-EceecEEEEeEEE
Q 013309 149 VQGGGT---INGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQ----MHIAF-TNCLRVVISNLEV 220 (445)
Q Consensus 149 I~G~G~---IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~----~~i~~-~~~~nv~I~n~~I 220 (445)
|++... .+|.+ . .+ ..-.....+++..+|++|+|... ..+-+ ..++...+.+|.|
T Consensus 339 It~~~~~~~~~g~~-T---------------~~-SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f 401 (588)
T PLN02197 339 ISYNRSVKLSPGTT-T---------------SL-SGTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRF 401 (588)
T ss_pred EEeccccccCCCCc-c---------------cc-eeEEEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEE
Confidence 111100 01100 0 01 12334467889999999998642 22333 2467788888888
Q ss_pred ECCCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcC---Cce--EEEeecCCcCCCccEEeEEE
Q 013309 221 IAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP---GHG--ISIGSLGKSNSSVRIHDIMV 295 (445)
Q Consensus 221 ~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~---~~g--i~igs~g~~~~~~~v~nv~i 295 (445)
....| -+.... ..-..++|.|...=|-| -|.....++||.+.. ..| -.|-..|.......-..+.|
T Consensus 402 ~GyQD-----TLy~~~-~Rqyy~~C~I~GtVDFI---FG~a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf 472 (588)
T PLN02197 402 DGYQD-----TLYVNN-GRQFYRNIVVSGTVDFI---FGKSATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVL 472 (588)
T ss_pred EecCc-----ceEecC-CCEEEEeeEEEeccccc---ccceeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEE
Confidence 87543 233332 34577888888654433 233457888887642 111 12212221111233457888
Q ss_pred EcEEEeCCcce----EEEEEecCCC-ceeeeEEEEeEEEecC
Q 013309 296 YGALISNTQNG----VRIKTWQGGS-GSATNIQFLDVLMKNV 332 (445)
Q Consensus 296 ~n~~~~~~~~g----i~i~~~~g~~-g~v~ni~~~ni~~~~~ 332 (445)
.||++.....- ...+++-|+. ..-..++|.+..|.+.
T Consensus 473 ~~C~it~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~~~~~ 514 (588)
T PLN02197 473 QNCRIVPDKKLTAERLTVASYLGRPWKKFSTTVIISTEIGDL 514 (588)
T ss_pred EccEEecCCcccccccccccccCCCCCCCceEEEEecccCCe
Confidence 88888775321 1122333332 2355777777777653
No 61
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.12 E-value=0.063 Score=57.13 Aligned_cols=208 Identities=14% Similarity=0.162 Sum_probs=110.7
Q ss_pred cHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCcCCcCCCCccccEEEeceeeEE
Q 013309 70 DTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLT 148 (445)
Q Consensus 70 dT~Aiq~Ai~~a~~~-~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~nv~ 148 (445)
|-.-||+||+++... ...-+|+|.+| +|.-..|.+... +.+++|+++|. +...
T Consensus 283 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-~Y~E~~v~i~~~-k~ni~l~G~g~------------------------~~Ti 336 (587)
T PLN02484 283 TFKTISEAIKKAPEHSSRRTIIYVKAG-RYEENNLKVGRK-KTNLMFIGDGK------------------------GKTV 336 (587)
T ss_pred CcccHHHHHHhccccCCCcEEEEEeCC-EEEEEEEEECCC-CceEEEEecCC------------------------CCeE
Confidence 466799999965432 22357999999 996644544211 56777776641 1111
Q ss_pred EEece-EEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCC----ceeEE-EceecEEEEeEEEEC
Q 013309 149 VQGGG-TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQ----MHIAF-TNCLRVVISNLEVIA 222 (445)
Q Consensus 149 I~G~G-~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~----~~i~~-~~~~nv~I~n~~I~~ 222 (445)
|+|.- ..++.+ .|. ..-.....+++..+|++|+|... ..+-+ ...+...+.+|.|..
T Consensus 337 It~~~~~~~~~~-t~~----------------saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G 399 (587)
T PLN02484 337 ITGGKSIFDNLT-TFH----------------TASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIG 399 (587)
T ss_pred EecCCcccCCCc-ccc----------------eEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEec
Confidence 22110 001100 010 12334466788888899988642 22333 246778888888887
Q ss_pred CCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCC------ce-EEEeecCCcCCCccEEeEEE
Q 013309 223 PAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPG------HG-ISIGSLGKSNSSVRIHDIMV 295 (445)
Q Consensus 223 ~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~------~g-i~igs~g~~~~~~~v~nv~i 295 (445)
..|. +.... ..-..++|.|...=|-| -|.....++||.+..- .| |.- .+. .+...-..+.|
T Consensus 400 ~QDT-----Ly~~~-~Rqyy~~C~I~GtVDFI---FG~a~avfq~C~i~~~~~~~~~~~~ITA--q~r-~~~~~~~G~vf 467 (587)
T PLN02484 400 YQDT-----LYVHS-NRQFFRECDIYGTVDFI---FGNAAVVLQNCSIYARKPMAQQKNTITA--QNR-KDPNQNTGISI 467 (587)
T ss_pred cCcc-----cccCC-CcEEEEecEEEecccee---cccceeEEeccEEEEecCCCCCceEEEe--cCC-CCCCCCcEEEE
Confidence 5443 22222 24567788887644433 3346777888877521 12 222 111 12233457888
Q ss_pred EcEEEeCCcceE----EEEEecCCC-ceeeeEEEEeEEEecC
Q 013309 296 YGALISNTQNGV----RIKTWQGGS-GSATNIQFLDVLMKNV 332 (445)
Q Consensus 296 ~n~~~~~~~~gi----~i~~~~g~~-g~v~ni~~~ni~~~~~ 332 (445)
.||.+.....-. ..+++-|+. ..-..++|.+..|.+.
T Consensus 468 ~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~i~~~ 509 (587)
T PLN02484 468 HACRILAASDLAASKGSFPTYLGRPWKLYSRTVYMMSYMGDH 509 (587)
T ss_pred EeeEEecCCccccccCccceeccCCCCCCceEEEEecccCCe
Confidence 888887643210 122232332 2345677777777653
No 62
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.12 E-value=0.021 Score=55.85 Aligned_cols=48 Identities=25% Similarity=0.259 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHHHcCCC-CCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEee
Q 013309 69 DDTEAFANAWKKACSFP-ARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISG 119 (445)
Q Consensus 69 DdT~Aiq~Ai~~a~~~~-gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G 119 (445)
-|-..||+||+++.... ..-+|+|.+| +|.- .|.+... +.+++|++++
T Consensus 10 gdf~TIq~Aida~p~~~~~~~~I~I~~G-~Y~E-~V~i~~~-k~~v~l~G~~ 58 (298)
T PF01095_consen 10 GDFTTIQAAIDAAPDNNTSRYTIFIKPG-TYRE-KVTIPRS-KPNVTLIGEG 58 (298)
T ss_dssp SSBSSHHHHHHHS-SSSSS-EEEEE-SE-EEE---EEE-ST-STTEEEEES-
T ss_pred CCccCHHHHHHhchhcCCceEEEEEeCe-eEcc-ccEeccc-cceEEEEecC
Confidence 45677999999654432 2358999999 9963 3444211 4566666553
No 63
>PLN02916 pectinesterase family protein
Probab=97.12 E-value=0.05 Score=56.48 Aligned_cols=149 Identities=10% Similarity=0.066 Sum_probs=76.9
Q ss_pred cHHHHHHHHHHHcC----CCCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCcCCcCCCCccccEEEecee
Q 013309 70 DTEAFANAWKKACS----FPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVN 145 (445)
Q Consensus 70 dT~Aiq~Ai~~a~~----~~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~ 145 (445)
|-.-||+||+++.+ ....-+|+|.+| +|.- .+.+... +++++|+++|. +
T Consensus 198 ~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~G-vY~E-~V~I~~~-k~~i~l~G~g~------------------------~ 250 (502)
T PLN02916 198 THRTINQALAALSRMGKSRTNRVIIYVKAG-VYNE-KVEIDRH-MKNVMFVGDGM------------------------D 250 (502)
T ss_pred CccCHHHHHHhcccccCCCCceEEEEEeCc-eeeE-EEEecCC-CceEEEEecCC------------------------C
Confidence 46689999996543 122357999999 9963 3434111 45677776641 1
Q ss_pred eEEEEece-EEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCC----ceeEE-EceecEEEEeEE
Q 013309 146 HLTVQGGG-TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQ----MHIAF-TNCLRVVISNLE 219 (445)
Q Consensus 146 nv~I~G~G-~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~----~~i~~-~~~~nv~I~n~~ 219 (445)
...|++.. .-||.+ .+ -..-.....+++..+|++|+|... ..+-+ ..++...+.+|.
T Consensus 251 ~TiIt~~~~~~~g~~-T~----------------~SAT~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~ 313 (502)
T PLN02916 251 KTIITNNRNVPDGST-TY----------------SSATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCS 313 (502)
T ss_pred CcEEEeCCccCCCCc-ce----------------eeEEEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeee
Confidence 11111110 001100 00 012334556788888888888632 12222 235666677777
Q ss_pred EECCCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEc
Q 013309 220 VIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACG 271 (445)
Q Consensus 220 I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~ 271 (445)
|....| -+.... ..-..++|.|...=|-| -|.....++||.+.
T Consensus 314 f~G~QD-----TLy~~~-~Rqyy~~C~I~GtVDFI---FG~a~avFq~C~I~ 356 (502)
T PLN02916 314 FKGYQD-----TLFVHS-LRQFYRDCHIYGTIDFI---FGDAAVVFQNCDIF 356 (502)
T ss_pred EeccCc-----eeEeCC-CCEEEEecEEeccccee---ccCceEEEecCEEE
Confidence 776433 222222 23455667766543332 23356666666653
No 64
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.11 E-value=0.04 Score=58.38 Aligned_cols=207 Identities=14% Similarity=0.146 Sum_probs=109.8
Q ss_pred cHHHHHHHHHHHcCC----CCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCcCCcCCCCccccEEEecee
Q 013309 70 DTEAFANAWKKACSF----PARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVN 145 (445)
Q Consensus 70 dT~Aiq~Ai~~a~~~----~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~ 145 (445)
|-.-||+||+++... .+.-+|+|.+| +|.- .|.+... +.+++|+++|. +
T Consensus 261 ~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G-~Y~E-~V~i~~~-k~~i~l~G~g~------------------------~ 313 (566)
T PLN02713 261 NFTTINDAVAAAPNNTDGSNGYFVIYVTAG-VYEE-YVSIPKN-KKYLMMIGDGI------------------------N 313 (566)
T ss_pred CCCCHHHHHHhhhcccCCCCceEEEEEcCc-EEEE-EEEecCC-CceEEEEecCC------------------------C
Confidence 467899999965432 12247999999 9964 3333111 55677766641 1
Q ss_pred eEEEEece-EEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCC----ceeEE-EceecEEEEeEE
Q 013309 146 HLTVQGGG-TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQ----MHIAF-TNCLRVVISNLE 219 (445)
Q Consensus 146 nv~I~G~G-~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~----~~i~~-~~~~nv~I~n~~ 219 (445)
...|+|.. ..|| |. ..+. .-.....+++..+|++|+|... ..+-+ ..++...+.+|.
T Consensus 314 ~TiIt~~~~~~~g-----~~-----------T~~S-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~ 376 (566)
T PLN02713 314 QTVITGNRSVVDG-----WT-----------TFNS-ATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCS 376 (566)
T ss_pred CcEEEcCCcccCC-----Cc-----------cccc-eeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeee
Confidence 11222211 0111 11 0111 2233456899999999999632 22322 346777888888
Q ss_pred EECCCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCC------ce-EEEeecCCcCCCccEEe
Q 013309 220 VIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPG------HG-ISIGSLGKSNSSVRIHD 292 (445)
Q Consensus 220 I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~------~g-i~igs~g~~~~~~~v~n 292 (445)
|.+..| -+.... ..-..++|.|...=|-| -|...+.++||.+... .+ |.- .|. .+...-..
T Consensus 377 ~~G~QD-----TLy~~~-~Rqyy~~C~I~GtVDFI---FG~a~avfq~C~i~~~~~~~~~~~~iTA--q~r-~~~~~~~G 444 (566)
T PLN02713 377 FEAYQD-----TLYTHS-LRQFYRECDIYGTVDFI---FGNAAVVFQNCNLYPRLPMQGQFNTITA--QGR-TDPNQNTG 444 (566)
T ss_pred eccCCc-----ceEECC-CCEEEEeeEEeccccee---cccceEEEeccEEEEecCCCCCcceeee--cCC-CCCCCCCE
Confidence 887443 233332 24577888887654433 3346778888877421 12 222 111 12223457
Q ss_pred EEEEcEEEeCCcceE----EEEEecCCC-ceeeeEEEEeEEEecC
Q 013309 293 IMVYGALISNTQNGV----RIKTWQGGS-GSATNIQFLDVLMKNV 332 (445)
Q Consensus 293 v~i~n~~~~~~~~gi----~i~~~~g~~-g~v~ni~~~ni~~~~~ 332 (445)
+.|.||++....... ..+++-|+. ..-..++|.+..|.+.
T Consensus 445 ~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~~~~~ 489 (566)
T PLN02713 445 TSIQNCTIKAADDLASSNYTVKTYLGRPWKEYSRTVVMQSYIDGL 489 (566)
T ss_pred EEEEcCEEecCCcccccccccceeeecCCCCcceEEEEecccCCe
Confidence 788888887653210 112222222 2245677777777653
No 65
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.05 E-value=0.0069 Score=55.71 Aligned_cols=119 Identities=20% Similarity=0.240 Sum_probs=74.4
Q ss_pred EEEE-eecceEEeceEEEc---------------CCCceeEEEceecEEEEeEEEECCCC---CCCCCc-eeee-ceecE
Q 013309 182 ITFH-KCKNLKVQNLRVVN---------------SQQMHIAFTNCLRVVISNLEVIAPAE---SPNTDG-IHIS-ASRGV 240 (445)
Q Consensus 182 i~~~-~~~nv~I~~v~i~n---------------s~~~~i~~~~~~nv~I~n~~I~~~~~---~~n~DG-i~~~-~s~nv 240 (445)
+.+. .++||.|++++|++ .....+.+..+++|.|++|++..... ....|| +++. .+++|
T Consensus 39 ~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~v 118 (200)
T PF00544_consen 39 LRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNV 118 (200)
T ss_dssp EEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEE
T ss_pred EEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceE
Confidence 4444 89999999999998 24567999999999999999997521 112555 6765 48999
Q ss_pred EEEeeEEecCCccEEEeCC-------ceeEEEEeeEEcCCce--EEEeecCCcCCCccEEeEEEEcEEEeC-CcceEEEE
Q 013309 241 EVKNSIVGTGDDCISIVGN-------SSLIRIRNFACGPGHG--ISIGSLGKSNSSVRIHDIMVYGALISN-TQNGVRIK 310 (445)
Q Consensus 241 ~I~n~~i~~gdD~i~i~~~-------~~ni~I~n~~~~~~~g--i~igs~g~~~~~~~v~nv~i~n~~~~~-~~~gi~i~ 310 (445)
+|++|.|...+.+..+++. ..+|++.+|.+.+..+ =.+ ..-.+++-|+.+.+ ..+++...
T Consensus 119 TiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~----------r~G~~Hv~NN~~~~~~~y~i~~~ 188 (200)
T PF00544_consen 119 TISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRV----------RFGYVHVYNNYYYNWSGYAIGAR 188 (200)
T ss_dssp EEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEE----------CSCEEEEES-EEEEECSESEEEE
T ss_pred EEEchhccccccccccCCCCCccccCCceEEEEeEEECchhhCCCcc----------cccEEEEEEeeeECCCCEEEEcc
Confidence 9999999875544444331 3688888888753321 011 11257777886654 34455544
No 66
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.05 E-value=0.054 Score=57.11 Aligned_cols=208 Identities=13% Similarity=0.147 Sum_probs=106.8
Q ss_pred cHHHHHHHHHHHcCCC-CCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCcCCcCCCCccccEEEeceeeEE
Q 013309 70 DTEAFANAWKKACSFP-ARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLT 148 (445)
Q Consensus 70 dT~Aiq~Ai~~a~~~~-gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~nv~ 148 (445)
|-.-||+||+++.... ..-+|+|.+| +|.- .|.+... +++++|+++|. +...
T Consensus 241 ~f~TIq~Ai~a~p~~~~~r~vI~Ik~G-vY~E-~V~i~~~-k~~i~l~G~g~------------------------~~Ti 293 (541)
T PLN02416 241 NFSTITDAINFAPNNSNDRIIIYVREG-VYEE-NVEIPIY-KTNIVLIGDGS------------------------DVTF 293 (541)
T ss_pred CccCHHHHHHhhhhcCCceEEEEEeCc-eeEE-EEecCCC-CccEEEEecCC------------------------CceE
Confidence 4678999999654322 2347899999 9953 3434110 56777776651 1111
Q ss_pred EEece-EEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCCc----eeEE-EceecEEEEeEEEEC
Q 013309 149 VQGGG-TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQM----HIAF-TNCLRVVISNLEVIA 222 (445)
Q Consensus 149 I~G~G-~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~----~i~~-~~~~nv~I~n~~I~~ 222 (445)
|.|.. ..|| |. ..+. .-.....+++..+|++|+|.... .+-+ ..++...+.+|.|.+
T Consensus 294 It~~~~~~~g-----~~-----------T~~s-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G 356 (541)
T PLN02416 294 ITGNRSVVDG-----WT-----------TFRS-ATLAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTING 356 (541)
T ss_pred EeCCCccCCC-----CC-----------ccce-EEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEec
Confidence 12210 0011 11 0111 22334578899999999986432 2222 246777888888887
Q ss_pred CCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCC---ce--EEEeecCCcCCCccEEeEEEEc
Q 013309 223 PAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPG---HG--ISIGSLGKSNSSVRIHDIMVYG 297 (445)
Q Consensus 223 ~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~---~g--i~igs~g~~~~~~~v~nv~i~n 297 (445)
..|.... . +..-..++|.|...=|-| -|.....++||++..- .| -.|-..+. .....-....|.|
T Consensus 357 ~QDTLy~-----~-~~Rqyy~~C~I~GtVDFI---FG~a~avfq~c~i~~~~~~~~~~~~iTA~~r-~~~~~~~G~vf~~ 426 (541)
T PLN02416 357 YQDTLYV-----H-SFRQFYRECDIYGTIDYI---FGNAAVVFQACNIVSKMPMPGQFTVITAQSR-DTPDEDTGISIQN 426 (541)
T ss_pred ccchhcc-----C-CCceEEEeeEEeecccee---eccceEEEeccEEEEecCCCCCceEEECCCC-CCCCCCCEEEEEe
Confidence 5443222 2 234577788887654433 2345677777776421 11 11211111 1223345777888
Q ss_pred EEEeCCcceE----EEEEecCCC-ceeeeEEEEeEEEec
Q 013309 298 ALISNTQNGV----RIKTWQGGS-GSATNIQFLDVLMKN 331 (445)
Q Consensus 298 ~~~~~~~~gi----~i~~~~g~~-g~v~ni~~~ni~~~~ 331 (445)
|++.....-. ..+++-|+. ..-..++|.+..|.+
T Consensus 427 c~i~~~~~~~~~~~~~~~yLGRPW~~~sr~v~~~s~i~~ 465 (541)
T PLN02416 427 CSILATEDLYSNSNSVKSYLGRPWRVYSRTVVLESYIDD 465 (541)
T ss_pred eEEecCCccccccccccccccCCCCCCccEEEEecccCC
Confidence 8887643210 112222322 134566676666665
No 67
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=97.04 E-value=0.00067 Score=48.42 Aligned_cols=39 Identities=36% Similarity=0.567 Sum_probs=23.8
Q ss_pred ccCCCCCccHHHHHHHHHHHcCCCCCcEEEEcCCcEEEeeeee
Q 013309 62 AKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPID 104 (445)
Q Consensus 62 a~gdg~tDdT~Aiq~Ai~~a~~~~gg~~v~~P~G~~Yl~~~l~ 104 (445)
|+|||++|||+||.+++++ . + .+.++=-.|.||.+++|.
T Consensus 1 A~GDGvtdDt~A~~a~l~a-~--~-~g~~IDg~GlTykVs~lP 39 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEA-S--P-VGRKIDGAGLTYKVSSLP 39 (67)
T ss_dssp ---CCCCE-HHHHHHHHHH-S----TTS-EE-TT-EEEESS--
T ss_pred CCCccccCcHHHHHHHHhc-c--C-CCeEEecCCceEEEeeCc
Confidence 7899999999999999984 2 2 345556678899988663
No 68
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.04 E-value=0.056 Score=58.06 Aligned_cols=209 Identities=10% Similarity=0.127 Sum_probs=116.9
Q ss_pred cHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCcCCcCCCCccccEEEeceeeEE
Q 013309 70 DTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLT 148 (445)
Q Consensus 70 dT~Aiq~Ai~~a~~~-~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~nv~ 148 (445)
|-.-||+||+++... ...-+|+|-+| +|.=. |.+..+ +.+++|+++|. +...
T Consensus 261 ~f~TIq~Av~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~-k~~i~l~Gdg~------------------------~~Ti 313 (670)
T PLN02217 261 QYKTINEALNFVPKKKNTTFVVHIKAG-IYKEY-VQVNRS-MTHLVFIGDGP------------------------DKTV 313 (670)
T ss_pred CccCHHHHHHhccccCCceEEEEEeCC-ceEEE-EEEcCC-CCcEEEEecCC------------------------CCeE
Confidence 567899999965432 22357999999 89553 333111 45666666541 1111
Q ss_pred EEeceE-EecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCC----ceeEE-EceecEEEEeEEEEC
Q 013309 149 VQGGGT-INGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQ----MHIAF-TNCLRVVISNLEVIA 222 (445)
Q Consensus 149 I~G~G~-IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~----~~i~~-~~~~nv~I~n~~I~~ 222 (445)
|.|... -||.+ .| + ..-.....+++..+|++|+|... ..+-+ ...+...+.+|.|..
T Consensus 314 It~~~~~~dg~~-T~---------------~-SAT~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G 376 (670)
T PLN02217 314 ISGSKSYKDGIT-TY---------------K-TATVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDG 376 (670)
T ss_pred EEcCCccCCCCC-cc---------------c-eEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeee
Confidence 222100 01100 00 1 12233457889999999998743 23333 347889999999998
Q ss_pred CCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCC-----ceEEEeecCCcCCCccEEeEEEEc
Q 013309 223 PAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPG-----HGISIGSLGKSNSSVRIHDIMVYG 297 (445)
Q Consensus 223 ~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~-----~gi~igs~g~~~~~~~v~nv~i~n 297 (445)
..|. +.... ..-..++|.|...=|-| -|.....++||.+..- ..-.|-..|. .+...-..+.|.|
T Consensus 377 ~QDT-----Ly~~~-~Rqyy~~C~I~GtVDFI---FG~a~avfq~C~I~~r~~~~~~~~~ITAqgr-~~~~~~tGfvf~~ 446 (670)
T PLN02217 377 YQDT-----LYAHS-HRQFYRDCTISGTIDFL---FGDAAAVFQNCTLLVRKPLLNQACPITAHGR-KDPRESTGFVLQG 446 (670)
T ss_pred ccch-----hccCC-CcEEEEeCEEEEeccEE---ecCceEEEEccEEEEccCCCCCceeEecCCC-CCCCCCceEEEEe
Confidence 5543 32222 35678899998754443 2446789999988521 1122222222 1223446899999
Q ss_pred EEEeCCcceEE----EEEecCCC-ceeeeEEEEeEEEecC
Q 013309 298 ALISNTQNGVR----IKTWQGGS-GSATNIQFLDVLMKNV 332 (445)
Q Consensus 298 ~~~~~~~~gi~----i~~~~g~~-g~v~ni~~~ni~~~~~ 332 (445)
|++.....-+. .+.+-|+. ..-..++|.+..|.+.
T Consensus 447 C~i~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~~ 486 (670)
T PLN02217 447 CTIVGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPDF 486 (670)
T ss_pred eEEecCccccccccccceeeccCCCCCceEEEEecccCCe
Confidence 99988642111 12222332 2356788888888764
No 69
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.00 E-value=0.1 Score=54.04 Aligned_cols=151 Identities=15% Similarity=0.094 Sum_probs=77.7
Q ss_pred CccHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCcCCcCCCCccccEEEeceee
Q 013309 68 NDDTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNH 146 (445)
Q Consensus 68 tDdT~Aiq~Ai~~a~~~-~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~n 146 (445)
+-|-.-||+||+++.+. ...-+|+|.+| +|.-. |.+.. .+.+++|+++|. +.
T Consensus 206 sG~f~TIq~AI~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~-~k~nItliGdg~------------------------~~ 258 (509)
T PLN02488 206 SGKYNTVNAAIAAAPEHSRKRFVIYIKTG-VYDEI-VRIGS-TKPNLTLIGDGQ------------------------DS 258 (509)
T ss_pred CCCccCHHHHHHhchhcCCCcEEEEEeCC-eeEEE-EEecC-CCccEEEEecCC------------------------Cc
Confidence 34567899999965442 22358999999 99643 33310 156777777651 11
Q ss_pred EEEEece-EEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCC----ceeEEE-ceecEEEEeEEE
Q 013309 147 LTVQGGG-TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQ----MHIAFT-NCLRVVISNLEV 220 (445)
Q Consensus 147 v~I~G~G-~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~----~~i~~~-~~~nv~I~n~~I 220 (445)
..|.|.- .-+|.+ .+. .+-.....+++..+|++|+|... ..+-+. .++...+.+|.|
T Consensus 259 TiIt~n~~~~~g~~-T~~----------------SATv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f 321 (509)
T PLN02488 259 TIITGNLSASNGKR-TFY----------------TATVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRI 321 (509)
T ss_pred eEEEEcccccCCCC-cee----------------eEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEccee
Confidence 1111100 001100 000 12233446778888888888642 122222 356666777777
Q ss_pred ECCCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEc
Q 013309 221 IAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACG 271 (445)
Q Consensus 221 ~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~ 271 (445)
.+..|. +... +..-..++|.|...=|-| -|...+.++||++.
T Consensus 322 ~GyQDT-----Ly~~-~~RqyyrdC~I~GtVDFI---FG~a~avFq~C~I~ 363 (509)
T PLN02488 322 EGYQDA-----LYPH-RDRQFYRECFITGTVDFI---CGNAAAVFQFCQIV 363 (509)
T ss_pred eccCcc-----eeeC-CCCEEEEeeEEeeccceE---ecceEEEEEccEEE
Confidence 764332 2222 224566666666543433 23456666666664
No 70
>PLN02314 pectinesterase
Probab=96.99 E-value=0.072 Score=56.82 Aligned_cols=207 Identities=15% Similarity=0.160 Sum_probs=109.0
Q ss_pred cHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCcCCcCCCCccccEEEeceeeEE
Q 013309 70 DTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLT 148 (445)
Q Consensus 70 dT~Aiq~Ai~~a~~~-~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~nv~ 148 (445)
|-.-||+|++++... ...-+|+|.+| +|.= .+.+... +.+++|+++|. +...
T Consensus 289 ~f~TI~~Av~a~p~~~~~r~vI~ik~G-~Y~E-~V~i~~~-k~~i~l~G~g~------------------------~~ti 341 (586)
T PLN02314 289 DVKTINEAVASIPKKSKSRFVIYVKEG-TYVE-NVLLDKS-KWNVMIYGDGK------------------------DKTI 341 (586)
T ss_pred CccCHHHHHhhccccCCceEEEEEcCc-eEEE-EEEecCC-CceEEEEecCC------------------------CCcE
Confidence 466799999954332 22347999999 8964 3333111 55677776641 1111
Q ss_pred EEece-EEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCC----ceeEE-EceecEEEEeEEEEC
Q 013309 149 VQGGG-TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQ----MHIAF-TNCLRVVISNLEVIA 222 (445)
Q Consensus 149 I~G~G-~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~----~~i~~-~~~~nv~I~n~~I~~ 222 (445)
|+|.. ..||.. .+. ..-.....+++..+|++|+|... ..+-+ ...+...+.+|.|.+
T Consensus 342 It~~~~~~~g~~-t~~----------------saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G 404 (586)
T PLN02314 342 ISGSLNFVDGTP-TFS----------------TATFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDA 404 (586)
T ss_pred EEecCCcCCCCC-ccc----------------eEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEe
Confidence 12110 011111 111 12333467888999999998642 12332 346677788888887
Q ss_pred CCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCC------ceEEEeecCCcCCCccEEeEEEE
Q 013309 223 PAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPG------HGISIGSLGKSNSSVRIHDIMVY 296 (445)
Q Consensus 223 ~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~------~gi~igs~g~~~~~~~v~nv~i~ 296 (445)
..|. +.... ..-..++|.|...=|-| -|.....++||.+..- .+ .|-..|. .+...-..+.|.
T Consensus 405 ~QDT-----Ly~~~-~rq~y~~C~I~GtvDFI---FG~a~avf~~c~i~~~~~~~~~~~-~iTA~~r-~~~~~~~G~vf~ 473 (586)
T PLN02314 405 FQDT-----LYAHS-NRQFYRDCDITGTIDFI---FGNAAVVFQNCNIQPRQPLPNQFN-TITAQGK-KDPNQNTGISIQ 473 (586)
T ss_pred ccch-----heeCC-CCEEEEeeEEEecccee---ccCceeeeeccEEEEecCCCCCCc-eEecCCC-CCCCCCCEEEEE
Confidence 5432 32222 23567778887654433 2345777888877421 12 1211121 122344577888
Q ss_pred cEEEeCCcceEEEEEecCCC-ceeeeEEEEeEEEecC
Q 013309 297 GALISNTQNGVRIKTWQGGS-GSATNIQFLDVLMKNV 332 (445)
Q Consensus 297 n~~~~~~~~gi~i~~~~g~~-g~v~ni~~~ni~~~~~ 332 (445)
||++..... +..+++-|+. ..-..++|.+..|.+.
T Consensus 474 ~c~i~~~~~-~~~~~yLGRpW~~ysr~v~~~s~i~~~ 509 (586)
T PLN02314 474 RCTISAFGN-LTAPTYLGRPWKDFSTTVIMQSYIGSF 509 (586)
T ss_pred eeEEecCCc-ccccccccCCCCCCceEEEEecccCCc
Confidence 888877532 1222332332 1244566777666653
No 71
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=96.97 E-value=0.076 Score=56.00 Aligned_cols=206 Identities=15% Similarity=0.161 Sum_probs=105.1
Q ss_pred cHHHHHHHHHHHcCCC-CCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCcCCcCCCCccccEEEeceeeEE
Q 013309 70 DTEAFANAWKKACSFP-ARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLT 148 (445)
Q Consensus 70 dT~Aiq~Ai~~a~~~~-gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~nv~ 148 (445)
|-..||+||+++.+.. ..-+|+|.+| +|.- .|.+... +.+++|+++|. +...
T Consensus 247 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-~Y~E-~V~i~~~-k~~i~l~G~g~------------------------~~Ti 299 (548)
T PLN02301 247 KYKTVKEAVASAPDNSKTRYVIYVKKG-TYKE-NVEIGKK-KKNLMLVGDGM------------------------DSTI 299 (548)
T ss_pred CcccHHHHHHhhhhcCCceEEEEEeCc-eeeE-EEEecCC-CceEEEEecCC------------------------CCcE
Confidence 4678999999654432 2347999999 9954 3334111 45677766641 1111
Q ss_pred EEece-EEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCC----ceeEE-EceecEEEEeEEEEC
Q 013309 149 VQGGG-TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQ----MHIAF-TNCLRVVISNLEVIA 222 (445)
Q Consensus 149 I~G~G-~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~----~~i~~-~~~~nv~I~n~~I~~ 222 (445)
|+|.. ..||.+ .| + ..-.....+++..+|++|+|... ..+-+ ..++...+.+|.|.+
T Consensus 300 It~~~~~~dg~~-T~---------------~-SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G 362 (548)
T PLN02301 300 ITGSLNVIDGST-TF---------------R-SATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDA 362 (548)
T ss_pred EEeCCccCCCCC-ce---------------e-eEEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeee
Confidence 22210 011111 00 0 12334456888889999998642 22322 236677788888877
Q ss_pred CCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCC------ce-EEEeecCCcCCCccEEeEEE
Q 013309 223 PAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPG------HG-ISIGSLGKSNSSVRIHDIMV 295 (445)
Q Consensus 223 ~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~------~g-i~igs~g~~~~~~~v~nv~i 295 (445)
..|. +.... ..-..++|.|...=|-| -|.....++||++..- .+ |.- .|. .+...-..+.|
T Consensus 363 ~QDT-----Ly~~~-~Rqyy~~C~I~GtVDFI---FG~a~avfq~c~i~~~~~~~~~~~~iTA--qgr-~~~~~~tG~vf 430 (548)
T PLN02301 363 YQDT-----LYAHS-LRQFYRDSYITGTVDFI---FGNAAVVFQNCKIVARKPMAGQKNMVTA--QGR-TDPNQNTGISI 430 (548)
T ss_pred cccc-----ceecC-CcEEEEeeEEEecccee---cccceeEEeccEEEEecCCCCCCceEEe--cCC-CCCCCCCEEEE
Confidence 4432 22222 23467777777654433 2345677777776421 12 222 111 12223457777
Q ss_pred EcEEEeCCcceE----EEEEecCCC-ceeeeEEEEeEEEec
Q 013309 296 YGALISNTQNGV----RIKTWQGGS-GSATNIQFLDVLMKN 331 (445)
Q Consensus 296 ~n~~~~~~~~gi----~i~~~~g~~-g~v~ni~~~ni~~~~ 331 (445)
.||++.....-. ..+++-|+. ..-..++|.+..|.+
T Consensus 431 ~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~l~~ 471 (548)
T PLN02301 431 QKCDIIASSDLEPVKGSFKTYLGRPWKEYSRTVVMQSYIDD 471 (548)
T ss_pred EeeEEecCccccccccccceeeecCCCCCceEEEEecccCC
Confidence 788777653210 112222221 234556666666654
No 72
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=96.86 E-value=0.079 Score=55.87 Aligned_cols=207 Identities=11% Similarity=0.117 Sum_probs=109.6
Q ss_pred ccHHHHHHHHHHHcCCC----CCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCcCCcCCCCccccEEEece
Q 013309 69 DDTEAFANAWKKACSFP----ARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRV 144 (445)
Q Consensus 69 DdT~Aiq~Ai~~a~~~~----gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~ 144 (445)
-+-.-||+||+++.... +.-+|+|.+| +|.- .|.+... +.+++|+++|.
T Consensus 233 G~f~TI~~Av~a~p~~~~~~~~r~vI~vk~G-~Y~E-~V~i~~~-k~~i~l~G~g~------------------------ 285 (538)
T PLN03043 233 DNFTTITDAIAAAPNNSKPEDGYFVIYAREG-YYEE-YVVVPKN-KKNIMLIGDGI------------------------ 285 (538)
T ss_pred CCCcCHHHHHHhccccCCCCcceEEEEEcCe-eeEE-EEEeCCC-CCcEEEEecCC------------------------
Confidence 34778999999554332 1248999999 9953 3433111 56777776641
Q ss_pred eeEEEEece-EEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCC----ceeEE-EceecEEEEeE
Q 013309 145 NHLTVQGGG-TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQ----MHIAF-TNCLRVVISNL 218 (445)
Q Consensus 145 ~nv~I~G~G-~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~----~~i~~-~~~~nv~I~n~ 218 (445)
+...|+|.- ..|| |. ..+ .+-.....+++..+|++|+|... ..+-+ ..++...+.+|
T Consensus 286 ~~tiIt~~~~~~dg-----~~-----------T~~-saT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C 348 (538)
T PLN03043 286 NKTIITGNHSVVDG-----WT-----------TFN-SSTFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRC 348 (538)
T ss_pred CCeEEEeCCccCCC-----Cc-----------ccc-ceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEee
Confidence 112222210 1121 11 011 12344466889999999998642 22333 24666788888
Q ss_pred EEECCCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcC-----C-ce-EEEeecCCcCCCccEE
Q 013309 219 EVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP-----G-HG-ISIGSLGKSNSSVRIH 291 (445)
Q Consensus 219 ~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~-----~-~g-i~igs~g~~~~~~~v~ 291 (445)
.|.+..|. +.... ..-..++|.|...=|-| -|.....++||++.. + .+ |.- .|. .+...-.
T Consensus 349 ~~~gyQDT-----Ly~~~-~rq~y~~c~I~GtVDFI---FG~a~avfq~c~i~~r~~~~~~~~~iTA--~~r-~~~~~~t 416 (538)
T PLN03043 349 SFEGYQDT-----LYVHS-LRQFYRECDIYGTVDFI---FGNAAAIFQNCNLYARKPMANQKNAFTA--QGR-TDPNQNT 416 (538)
T ss_pred EEeccCcc-----cccCC-CcEEEEeeEEeeccceE---eecceeeeeccEEEEecCCCCCCceEEe--cCC-CCCCCCc
Confidence 88875442 22222 24567788887654433 234577788887642 1 12 332 111 1223335
Q ss_pred eEEEEcEEEeCCcceE----EEEEecCCC-ceeeeEEEEeEEEec
Q 013309 292 DIMVYGALISNTQNGV----RIKTWQGGS-GSATNIQFLDVLMKN 331 (445)
Q Consensus 292 nv~i~n~~~~~~~~gi----~i~~~~g~~-g~v~ni~~~ni~~~~ 331 (445)
.+.|.||++.....-. ..+++-|+. ..-..++|.+..|.+
T Consensus 417 G~~~~~c~i~~~~~~~~~~~~~~~yLGRpW~~ysr~v~~~s~i~~ 461 (538)
T PLN03043 417 GISIINCTIEAAPDLAMDPNSTMNFLGRPWKPYSRTVYMQSYIGD 461 (538)
T ss_pred eEEEEecEEecCCcccccccccceeccCCCCCCceEEEEecccCC
Confidence 7788888887643210 112222322 224566677766665
No 73
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=96.79 E-value=0.1 Score=55.57 Aligned_cols=181 Identities=13% Similarity=0.156 Sum_probs=94.3
Q ss_pred cHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCcCCcCCCCccccEEEeceeeEE
Q 013309 70 DTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLT 148 (445)
Q Consensus 70 dT~Aiq~Ai~~a~~~-~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~nv~ 148 (445)
|-..||+||+++... .+.-+|+|.+| +|.-. +.+... +.+++|+++|. +...
T Consensus 286 ~f~TI~~Av~a~p~~~~~r~vI~ik~G-vY~E~-V~i~~~-k~ni~l~Gdg~------------------------~~Ti 338 (587)
T PLN02313 286 DFTTVAAAVAAAPEKSNKRFVIHIKAG-VYREN-VEVTKK-KKNIMFLGDGR------------------------GKTI 338 (587)
T ss_pred CCccHHHHHHhccccCCceEEEEEeCc-eeEEE-EEeCCC-CCeEEEEecCC------------------------CccE
Confidence 567899999965432 22348999999 99643 333111 45666666641 1122
Q ss_pred EEece-EEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCC----ceeEE-EceecEEEEeEEEEC
Q 013309 149 VQGGG-TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQ----MHIAF-TNCLRVVISNLEVIA 222 (445)
Q Consensus 149 I~G~G-~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~----~~i~~-~~~~nv~I~n~~I~~ 222 (445)
|+|.. ..||.+ .| + ..-.....+++..+|++|+|... ..+-+ ..++...+.+|.|.+
T Consensus 339 It~~~~~~~g~~-t~---------------~-sat~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g 401 (587)
T PLN02313 339 ITGSRNVVDGST-TF---------------H-SATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFA 401 (587)
T ss_pred EEeCCcccCCCC-ce---------------e-eEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEec
Confidence 22210 111111 00 1 12233456788888999988642 22222 246667778888877
Q ss_pred CCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCC---ce--EEEeecCCcCCCccEEeEEEEc
Q 013309 223 PAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPG---HG--ISIGSLGKSNSSVRIHDIMVYG 297 (445)
Q Consensus 223 ~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~---~g--i~igs~g~~~~~~~v~nv~i~n 297 (445)
..|. +.... ..-..++|.|...=|-| -|...+.++||.+..- .| -.|-..|. .+...-..+.|.|
T Consensus 402 ~QDT-----Ly~~~-~rq~y~~c~I~GtvDFI---FG~a~avfq~c~i~~r~~~~~~~~~iTAqgr-~~~~~~tG~v~~~ 471 (587)
T PLN02313 402 YQDT-----LYVHS-NRQFFVKCHITGTVDFI---FGNAAAVLQDCDINARRPNSGQKNMVTAQGR-SDPNQNTGIVIQN 471 (587)
T ss_pred ccch-----hccCC-CcEEEEeeEEeecccee---ccceeEEEEccEEEEecCCCCCcceEEecCC-CCCCCCceEEEEe
Confidence 4432 22222 23466777777654433 2345677777776421 11 11211121 1223345677777
Q ss_pred EEEeCCc
Q 013309 298 ALISNTQ 304 (445)
Q Consensus 298 ~~~~~~~ 304 (445)
|++....
T Consensus 472 c~i~~~~ 478 (587)
T PLN02313 472 CRIGGTS 478 (587)
T ss_pred cEEecCC
Confidence 7776643
No 74
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=96.72 E-value=0.25 Score=52.59 Aligned_cols=209 Identities=12% Similarity=0.142 Sum_probs=103.2
Q ss_pred cHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeeecCCCCCCeeEeEeeEEECCCCcCCcCCCCccccEEEeceeeEE
Q 013309 70 DTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLT 148 (445)
Q Consensus 70 dT~Aiq~Ai~~a~~~-~gg~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~nv~ 148 (445)
|-.-||+||+++... ...-+|+|.+| +|.-. +.+.. .+.+++|+++|. +...
T Consensus 270 ~f~TIq~Av~a~p~~~~~r~vI~Ik~G-vY~E~-V~i~~-~k~~i~l~G~g~------------------------~~Ti 322 (572)
T PLN02990 270 QYKTINEALNAVPKANQKPFVIYIKQG-VYNEK-VDVTK-KMTHVTFIGDGP------------------------TKTK 322 (572)
T ss_pred CCcCHHHHHhhCcccCCceEEEEEeCc-eeEEE-EEecC-CCCcEEEEecCC------------------------CceE
Confidence 466799999965332 22357999999 99643 33311 056777777651 1111
Q ss_pred EEece-EEecCCchhhccccccCCCCCCCCCCeEEEEEeecceEEeceEEEcCCC----ceeEE-EceecEEEEeEEEEC
Q 013309 149 VQGGG-TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQ----MHIAF-TNCLRVVISNLEVIA 222 (445)
Q Consensus 149 I~G~G-~IDG~G~~~w~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~----~~i~~-~~~~nv~I~n~~I~~ 222 (445)
|+|.- .-+|....+ + ..-.....+++..+|++|+|... ..+-+ ..++...+.+|.|.+
T Consensus 323 It~~~~~~~g~~~T~---------------~-saT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G 386 (572)
T PLN02990 323 ITGSLNFYIGKVKTY---------------L-TATVAINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDG 386 (572)
T ss_pred EEeccccCCCCccce---------------e-eeEEEEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEec
Confidence 11100 000100000 0 12233456788889999988643 22322 246667777888776
Q ss_pred CCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcC-----CceEEEeecCCcCCCccEEeEEEEc
Q 013309 223 PAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP-----GHGISIGSLGKSNSSVRIHDIMVYG 297 (445)
Q Consensus 223 ~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~-----~~gi~igs~g~~~~~~~v~nv~i~n 297 (445)
..|. +.... ..-..++|.|...=|-| -|.....++||++.. +..-.|-..|. .+...-..+.|.|
T Consensus 387 ~QDT-----Ly~~~-~Rqyy~~C~I~GtVDFI---FG~a~avf~~C~i~~~~~~~~~~~~iTAq~r-~~~~~~~G~vf~~ 456 (572)
T PLN02990 387 YQDT-----LYVHS-HRQFFRDCTVSGTVDFI---FGDAKVVLQNCNIVVRKPMKGQSCMITAQGR-SDVRESTGLVLQN 456 (572)
T ss_pred ccch-----hccCC-CcEEEEeeEEecccceE---ccCceEEEEccEEEEecCCCCCceEEEeCCC-CCCCCCceEEEEe
Confidence 4432 22222 23456777777644433 233567777777642 11112211111 1122334677777
Q ss_pred EEEeCCcceEE----EEEecCCC-ceeeeEEEEeEEEec
Q 013309 298 ALISNTQNGVR----IKTWQGGS-GSATNIQFLDVLMKN 331 (445)
Q Consensus 298 ~~~~~~~~gi~----i~~~~g~~-g~v~ni~~~ni~~~~ 331 (445)
|++........ .+++-|+. ..-..++|.+..|.+
T Consensus 457 C~it~~~~~~~~~~~~~~yLGRpW~~ysrvV~~~s~i~~ 495 (572)
T PLN02990 457 CHITGEPAYIPVKSINKAYLGRPWKEFSRTIIMGTTIDD 495 (572)
T ss_pred eEEecCccccccccccceEeecCCCCCceEEEEecccCC
Confidence 77766432111 11222221 123566666666654
No 75
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=96.34 E-value=0.4 Score=45.57 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=13.5
Q ss_pred CcEEEEcCCcEEEe-eeeee
Q 013309 87 RTKIVFSAGYTFLI-HPIDI 105 (445)
Q Consensus 87 g~~v~~P~G~~Yl~-~~l~l 105 (445)
..-+++|+|+|.++ +.|.-
T Consensus 71 nt~ifip~gktl~v~g~l~g 90 (464)
T PRK10123 71 NTGIFIPPGKTLHILGSLRG 90 (464)
T ss_pred ccceEeCCCCeEEEEEEeec
Confidence 35789999988777 45543
No 76
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=96.08 E-value=0.27 Score=45.27 Aligned_cols=127 Identities=13% Similarity=0.178 Sum_probs=73.8
Q ss_pred cEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEec-CCccEEEeCCceeEEEEeeEEcCCce--EEEeecCCcCCCc
Q 013309 212 RVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGT-GDDCISIVGNSSLIRIRNFACGPGHG--ISIGSLGKSNSSV 288 (445)
Q Consensus 212 nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-gdD~i~i~~~~~ni~I~n~~~~~~~g--i~igs~g~~~~~~ 288 (445)
..+++|+.|-. +..||||..+ +.+|+|+.... +.|++.++.....++|.+.-..+... |..-.
T Consensus 62 GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng-------- 127 (215)
T PF03211_consen 62 GATLKNVIIGA----NQADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQHNG-------- 127 (215)
T ss_dssp TEEEEEEEETS----S-TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE-S--------
T ss_pred CCEEEEEEEcC----CCcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEEecC--------
Confidence 45677777644 4678999887 68999999886 89999998865566666665544332 44322
Q ss_pred cEEeEEEEcEEEeCCcceEEEEEecC---CCceeeeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCcceEEEEEEEe
Q 013309 289 RIHDIMVYGALISNTQNGVRIKTWQG---GSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIH 365 (445)
Q Consensus 289 ~v~nv~i~n~~~~~~~~gi~i~~~~g---~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~f~n 365 (445)
--.++|+|-+..+ .|-..++--+ ..+.-|.+++++........-+.|...|.+. .+|+++.++.
T Consensus 128 -~Gtv~I~nF~a~d--~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD~----------ati~~~~~~~ 194 (215)
T PF03211_consen 128 -GGTVTIKNFYAED--FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGDT----------ATISNSCIKG 194 (215)
T ss_dssp -SEEEEEEEEEEEE--EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTTT----------EEEEEEEEEE
T ss_pred -ceeEEEEeEEEcC--CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCCe----------EEEEEEEecC
Confidence 1256777755443 3444444311 1134566777766655433334566666543 4677777665
No 77
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=95.56 E-value=1.3 Score=40.79 Aligned_cols=137 Identities=13% Similarity=0.119 Sum_probs=87.2
Q ss_pred EEEEEeecceEEeceEEEcCCCceeEEEceecEEEEeEEEECCCCCCCCCceeeecee-cEEEEeeEEecCCccEEEeCC
Q 013309 181 AITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASR-GVEVKNSIVGTGDDCISIVGN 259 (445)
Q Consensus 181 ~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~-nv~I~n~~i~~gdD~i~i~~~ 259 (445)
+|.+. ...+|+|+.|-.+...+||... +.+|+|++... --.|.+.+.+.. .++|.+.-.+..+|=|-=+.+
T Consensus 56 vF~le--~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwed----VcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng 127 (215)
T PF03211_consen 56 VFILE--DGATLKNVIIGANQADGIHCKG--SCTLENVWWED----VCEDAATFKGDGGTVTIIGGGARNASDKVFQHNG 127 (215)
T ss_dssp SEEEE--TTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-S
T ss_pred EEEec--CCCEEEEEEEcCCCcCceEEcC--CEEEEEEEecc----cceeeeEEcCCCceEEEeCCcccCCCccEEEecC
Confidence 44444 6889999999777778999887 78999999987 467888888765 888888888887776655566
Q ss_pred ceeEEEEeeEEcCCceEEEeecCCcCCC-ccEEeEEEEcEEEeCCcceEEEEEecCCCceeeeEEEEe
Q 013309 260 SSLIRIRNFACGPGHGISIGSLGKSNSS-VRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLD 326 (445)
Q Consensus 260 ~~ni~I~n~~~~~~~gi~igs~g~~~~~-~~v~nv~i~n~~~~~~~~gi~i~~~~g~~g~v~ni~~~n 326 (445)
...+.|+|.+.. ..|--.-|.|.-... +.-+.+.+++........-+.|-...+....++++.+..
T Consensus 128 ~Gtv~I~nF~a~-d~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD~ati~~~~~~~ 194 (215)
T PF03211_consen 128 GGTVTIKNFYAE-DFGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGDTATISNSCIKG 194 (215)
T ss_dssp SEEEEEEEEEEE-EEEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTTTEEEEEEEEEE
T ss_pred ceeEEEEeEEEc-CCCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCCeEEEEEEEecC
Confidence 778999996553 234334454433332 244667777765443322233444456555666666555
No 78
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=95.43 E-value=0.31 Score=47.43 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=31.2
Q ss_pred EEEEEeecceEEeceEEEcC-------CCceeEEEceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEe
Q 013309 181 AITFHKCKNLKVQNLRVVNS-------QQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVG 248 (445)
Q Consensus 181 ~i~~~~~~nv~I~~v~i~ns-------~~~~i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~ 248 (445)
.|.+..+.+++|++.++..- ..-++++.++.+..|.+.+|.- ..|||....|++-.+++..++
T Consensus 122 Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy-----~rDgIy~~~S~~~~~~gnr~~ 191 (408)
T COG3420 122 GIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISY-----GRDGIYSDTSQHNVFKGNRFR 191 (408)
T ss_pred EEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCcccc-----ccceEEEcccccceecccchh
Confidence 35555555555555555431 1334555555555555444432 344555555544444444444
No 79
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=95.09 E-value=0.65 Score=45.01 Aligned_cols=47 Identities=17% Similarity=0.103 Sum_probs=29.2
Q ss_pred ccHHHHHHHHHHHcCCCC--CcEEEEcCCcEEEeeeeeecCCCCCCeeEeEe
Q 013309 69 DDTEAFANAWKKACSFPA--RTKIVFSAGYTFLIHPIDISGPCKSRLTLEIS 118 (445)
Q Consensus 69 DdT~Aiq~Ai~~a~~~~g--g~~v~~P~G~~Yl~~~l~l~~~~~s~v~l~~~ 118 (445)
++-..||+|+|+|....+ ...|.+-+| .|.- .|.+.-+ ...++|+++
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~G-vY~e-~v~Vp~~-~~~ITLyGe 140 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAG-VYQE-TVYVPAA-PGGITLYGE 140 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccc-eece-eEEecCC-CCceeEEec
Confidence 566789999998766544 346778899 8843 3333211 223666665
No 80
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=92.74 E-value=2.1 Score=43.54 Aligned_cols=113 Identities=17% Similarity=0.170 Sum_probs=39.7
Q ss_pred ecceEEeceEEEcC--CC-----ceeEE--EceecEEEEeEEEECCCCCCCCCc--eee----eceecEEEEeeEEecC-
Q 013309 187 CKNLKVQNLRVVNS--QQ-----MHIAF--TNCLRVVISNLEVIAPAESPNTDG--IHI----SASRGVEVKNSIVGTG- 250 (445)
Q Consensus 187 ~~nv~I~~v~i~ns--~~-----~~i~~--~~~~nv~I~n~~I~~~~~~~n~DG--i~~----~~s~nv~I~n~~i~~g- 250 (445)
.+.++|+|+.|++. +. +.... ..+.+.++.++.|..-.. +..+. ..+ ...++-+|++|.|..-
T Consensus 66 G~yl~v~GL~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~-~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~ 144 (425)
T PF14592_consen 66 GSYLVVSGLKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNN-PDREESDNWVTIYSLYGKHNRVDHNYFQGKT 144 (425)
T ss_dssp SSSEEEES-EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--S-S-S-SEEE---TT-----S-EEES-EEE---
T ss_pred eeeEEEeCeEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCC-cccccCceEEEEEEeeccCceEEccEeeccc
Confidence 36677777777653 11 11111 135566677777764211 11121 112 2356777777777642
Q ss_pred --CccEEEe--C-----CceeEEEEeeEEcC-----Cc---eEEEeecCCcCCCccEEeEEEEcEEEeCC
Q 013309 251 --DDCISIV--G-----NSSLIRIRNFACGP-----GH---GISIGSLGKSNSSVRIHDIMVYGALISNT 303 (445)
Q Consensus 251 --dD~i~i~--~-----~~~ni~I~n~~~~~-----~~---gi~igs~g~~~~~~~v~nv~i~n~~~~~~ 303 (445)
.--+.+. . ...+-+|.+++|.. +. .|.||.- .....-.+.+|+++.|.++
T Consensus 145 ~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S---~~S~~~s~t~Ve~NlFe~c 211 (425)
T PF14592_consen 145 NRGPTLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTS---HSSMSDSNTTVENNLFERC 211 (425)
T ss_dssp SSS-SEEE--S--SS-------EEES-EEE-E---SSS---SEEE-SS---TT-B-----EEES-EEEEE
T ss_pred cCCcEEEEEecccCccccccCceEEeccccccCCCCCCCceeEEEecc---cccccccceeeecchhhhc
Confidence 2224433 1 12344567776651 22 2676652 2233335666666666655
No 81
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=92.70 E-value=0.2 Score=33.80 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=13.2
Q ss_pred ceeeeceecEEEEeeEEecCCccEEEeC
Q 013309 231 GIHISASRGVEVKNSIVGTGDDCISIVG 258 (445)
Q Consensus 231 Gi~~~~s~nv~I~n~~i~~gdD~i~i~~ 258 (445)
||.++.|.+.+|+++.+....|+|.+..
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~ 28 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD 28 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe
Confidence 3444444444455555544444444443
No 82
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=92.21 E-value=0.25 Score=33.23 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=29.4
Q ss_pred eEEEceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEec
Q 013309 205 IAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGT 249 (445)
Q Consensus 205 i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~ 249 (445)
|.+..+.+.+|++.+|.. +.|||++..+.+.+|+++.+..
T Consensus 2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEEc
Confidence 556666677777777776 5668888888888888877764
No 83
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=91.70 E-value=16 Score=36.80 Aligned_cols=181 Identities=12% Similarity=0.106 Sum_probs=102.3
Q ss_pred EEceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEec-CCccEEEeCCceeEEEEeeEEcCCc-eEEEeecCCc
Q 013309 207 FTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGT-GDDCISIVGNSSLIRIRNFACGPGH-GISIGSLGKS 284 (445)
Q Consensus 207 ~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-gdD~i~i~~~~~ni~I~n~~~~~~~-gi~igs~g~~ 284 (445)
+..-.+|++.|+.+...+ ...|+-+.+..++++.+|.|.+ ...|+... ....|++|+|.++. |+.-.
T Consensus 117 V~gM~~VtF~ni~F~~~~---~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~~----- 185 (386)
T PF01696_consen 117 VVGMEGVTFVNIRFEGRD---TFSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVSR----- 185 (386)
T ss_pred EeeeeeeEEEEEEEecCC---ccceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeecC-----
Confidence 455678889999998753 3557778888899999999987 44455444 37788899887653 44322
Q ss_pred CCCccEEeEEEEcEEEeCCcceEEEEEecCCCceeeeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCcceEEEEEEE
Q 013309 285 NSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFI 364 (445)
Q Consensus 285 ~~~~~v~nv~i~n~~~~~~~~gi~i~~~~g~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~f~ 364 (445)
....+.|++|.|...--||.. ++ ...++++...+..-.+.+++ .+.|++-.|-
T Consensus 186 ----~~~~lsVk~C~FekC~igi~s----~G-----~~~i~hn~~~ec~Cf~l~~g--------------~g~i~~N~v~ 238 (386)
T PF01696_consen 186 ----GKSKLSVKKCVFEKCVIGIVS----EG-----PARIRHNCASECGCFVLMKG--------------TGSIKHNMVC 238 (386)
T ss_pred ----CcceEEeeheeeeheEEEEEe----cC-----CeEEecceecccceEEEEcc--------------cEEEeccEEe
Confidence 345778888888887666622 22 23344444444433333331 1234433332
Q ss_pred eEEEEccCcceEEEEecCCCCeeCeEEEeEEEEecCCCc-------cceeeeeeeecccceecCCCccCCC
Q 013309 365 HIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGI-------AKSFCWEAYGSSVGQVEPPPCFACS 428 (445)
Q Consensus 365 ni~~~~~~~~~~~i~~~~~~~~~~i~~~nv~i~~~~~~~-------~~~~c~n~~~~~~~~~~p~~c~~~~ 428 (445)
+-.-......--.+.|... .| ..|.+|+|......+ .-..|.==-|...|.-.|..|.=.+
T Consensus 239 ~~~~~~~~~~~~m~tC~~g-~~--~pL~tiHIvs~~r~~wP~F~~Nvl~r~~m~lG~RrG~f~p~qc~~s~ 306 (386)
T PF01696_consen 239 GPNDLPDSMNFQMVTCAGG-HV--QPLSTIHIVSHRRRPWPVFEHNVLMRCRMHLGRRRGVFHPKQCNFSH 306 (386)
T ss_pred CCCCCCCcccceEEEeCCC-eE--EeeeeEEEeCCCCCCCCcccccEEEEEEEEeccceeeeecCccccee
Confidence 2111000001223445432 23 466777777655432 2233432334557888888887654
No 84
>PLN02480 Probable pectinesterase
Probab=91.01 E-value=9.3 Score=38.10 Aligned_cols=111 Identities=8% Similarity=0.018 Sum_probs=74.1
Q ss_pred EceecEEEEeEEEECCCC-----CCCCCceeee-ceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeec
Q 013309 208 TNCLRVVISNLEVIAPAE-----SPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSL 281 (445)
Q Consensus 208 ~~~~nv~I~n~~I~~~~~-----~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~ 281 (445)
...++++++|++|.+... .....++.+. .++++.+.||.|...-|.+.... ..-.++||.+.+.-.+=+|.
T Consensus 129 V~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~C~IeG~VDFIFG~- 205 (343)
T PLN02480 129 VEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK--GRHYYHSCYIQGSIDFIFGR- 205 (343)
T ss_pred EECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC--CCEEEEeCEEEeeeeEEccc-
Confidence 346789999999998521 1123455553 47899999999999878775443 46788999988776777765
Q ss_pred CCcCCCccEEeEEEEcEEEeCCc------ceEEEEEecCC-CceeeeEEEEeEEEecC
Q 013309 282 GKSNSSVRIHDIMVYGALISNTQ------NGVRIKTWQGG-SGSATNIQFLDVLMKNV 332 (445)
Q Consensus 282 g~~~~~~~v~nv~i~n~~~~~~~------~gi~i~~~~g~-~g~v~ni~~~ni~~~~~ 332 (445)
-...|+||++.... .|. |. .+++ ...-....|.|+++...
T Consensus 206 ---------g~a~fe~C~i~s~~~~~~~~~G~-IT-A~~r~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 206 ---------GRSIFHNCEIFVIADRRVKIYGS-IT-AHNRESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred ---------eeEEEEccEEEEecCCCCCCceE-EE-cCCCCCCCCCEEEEECCEEccc
Confidence 36788999986532 122 22 2222 12335678999998763
No 85
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=86.11 E-value=33 Score=35.20 Aligned_cols=117 Identities=7% Similarity=0.041 Sum_probs=75.6
Q ss_pred EEceecEEEEeEEEECCCC----CCCCCceeee-ceecEEEEeeEEecCCccEEEeCC----------ceeEEEEeeEEc
Q 013309 207 FTNCLRVVISNLEVIAPAE----SPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGN----------SSLIRIRNFACG 271 (445)
Q Consensus 207 ~~~~~nv~I~n~~I~~~~~----~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~----------~~ni~I~n~~~~ 271 (445)
....+++..+|++|.+... ..+...+.+. ..+.+.+.+|.|...-|.+..... ...-.++||.+.
T Consensus 202 ~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIe 281 (422)
T PRK10531 202 WSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIE 281 (422)
T ss_pred EEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEe
Confidence 3467889999999998532 1122333333 367899999999998888776321 235789999998
Q ss_pred CCceEEEeecCCcCCCccEEeEEEEcEEEeCCcc----eEEEEEecCCCceeeeEEEEeEEEecCC
Q 013309 272 PGHGISIGSLGKSNSSVRIHDIMVYGALISNTQN----GVRIKTWQGGSGSATNIQFLDVLMKNVS 333 (445)
Q Consensus 272 ~~~gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~----gi~i~~~~g~~g~v~ni~~~ni~~~~~~ 333 (445)
+.-.+-+|. -...|+||+|..... .-.|.........-...+|.|+++....
T Consensus 282 G~VDFIFG~----------g~AvFenC~I~s~~~~~~~~g~ITA~~t~~~~~~GfvF~nCrit~~g 337 (422)
T PRK10531 282 GDVDFVFGR----------GAVVFDNTEFRVVNSRTQQEAYVFAPATLPNIYYGFLAINSRFNASG 337 (422)
T ss_pred ecccEEccC----------ceEEEEcCEEEEecCCCCCceEEEecCCCCCCCCEEEEECCEEecCC
Confidence 877777776 267788888865321 1222211111233457889999998743
No 86
>PLN02665 pectinesterase family protein
Probab=84.54 E-value=22 Score=35.84 Aligned_cols=119 Identities=9% Similarity=0.075 Sum_probs=76.7
Q ss_pred EceecEEEEeEEEECCCCC-----CCCCceeee-ceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeec
Q 013309 208 TNCLRVVISNLEVIAPAES-----PNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSL 281 (445)
Q Consensus 208 ~~~~nv~I~n~~I~~~~~~-----~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~ 281 (445)
..++++..+|++|.+.... .......+. ..+...+.||.|....|.+.... ..-.++||.+.+.-.+=+|.
T Consensus 151 v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~--gr~yf~~CyIeG~VDFIFG~- 227 (366)
T PLN02665 151 VESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDK--GRHFFKDCYIEGTVDFIFGS- 227 (366)
T ss_pred EECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEeCC--CCEEEEeeEEeeccceeccc-
Confidence 4578888999999884321 111223322 25789999999999888876554 45789999998877777776
Q ss_pred CCcCCCccEEeEEEEcEEEeCCcce-EEEEEecCCC--ceeeeEEEEeEEEecCCccEEE
Q 013309 282 GKSNSSVRIHDIMVYGALISNTQNG-VRIKTWQGGS--GSATNIQFLDVLMKNVSNPIII 338 (445)
Q Consensus 282 g~~~~~~~v~nv~i~n~~~~~~~~g-i~i~~~~g~~--g~v~ni~~~ni~~~~~~~~i~i 338 (445)
-...|+||++.-...+ ...-+.+++. ..-....|.|+++......+++
T Consensus 228 ---------g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~~~~yL 278 (366)
T PLN02665 228 ---------GKSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTGTGAYL 278 (366)
T ss_pred ---------cceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCCCceee
Confidence 2667888888654333 1222333321 2335778999999875423333
No 87
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=84.10 E-value=17 Score=36.81 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=44.7
Q ss_pred eecEEEEeeE-EecCCccEEEeCC-----------------------ceeEEEEeeEEcCCceEEEeecCCcCCCccEEe
Q 013309 237 SRGVEVKNSI-VGTGDDCISIVGN-----------------------SSLIRIRNFACGPGHGISIGSLGKSNSSVRIHD 292 (445)
Q Consensus 237 s~nv~I~n~~-i~~gdD~i~i~~~-----------------------~~ni~I~n~~~~~~~gi~igs~g~~~~~~~v~n 292 (445)
+=|...+|+. |..-.|++.+.+. -.|=.|+|+...++.|+-+|.- ...++++|
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~lGVG~~~D---G~~~yvsn 339 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGSLGVGIGMD---GKGGYVSN 339 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES-SSESCEEE---CCS-EEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheeccceeeeeec---CCCceEee
Confidence 3456666665 3446788887652 2466788888888888776653 35667778
Q ss_pred EEEEcEEEeCCcceEEEEEecCCCceeeeEEEEeEEEecC
Q 013309 293 IMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNV 332 (445)
Q Consensus 293 v~i~n~~~~~~~~gi~i~~~~g~~g~v~ni~~~ni~~~~~ 332 (445)
|++++|. ..|+.++. .+-+|.||++-+.
T Consensus 340 i~~~d~~----g~G~~~~~--------~~~~ftNitvId~ 367 (549)
T PF09251_consen 340 ITVQDCA----GAGIFIRG--------TNKVFTNITVIDT 367 (549)
T ss_dssp EEEES-S----SESEEEEC--------CS-EEEEEEEES-
T ss_pred EEeeccc----CCceEEee--------cCCceeeeEEEec
Confidence 7777764 34666654 3445677776543
No 88
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=83.71 E-value=30 Score=36.57 Aligned_cols=114 Identities=12% Similarity=0.074 Sum_probs=74.4
Q ss_pred EEceecEEEEeEEEECCCCCCCCCceeee-ceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcC
Q 013309 207 FTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSN 285 (445)
Q Consensus 207 ~~~~~nv~I~n~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~ 285 (445)
....+++..+|++|.+.........+.+. .++...+.+|.|....|.+..++ ..-.+++|++.+.-.+=+|.
T Consensus 309 ~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~----- 381 (529)
T PLN02170 309 AAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHS--KRQFYRETDITGTVDFIFGN----- 381 (529)
T ss_pred EEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCC--CCEEEEeeEEccccceeccc-----
Confidence 34567788888888875432233344433 25788999999998888877665 34577999998877777765
Q ss_pred CCccEEeEEEEcEEEeCCcc---eEEEEEecCC--CceeeeEEEEeEEEecCC
Q 013309 286 SSVRIHDIMVYGALISNTQN---GVRIKTWQGG--SGSATNIQFLDVLMKNVS 333 (445)
Q Consensus 286 ~~~~v~nv~i~n~~~~~~~~---gi~i~~~~g~--~g~v~ni~~~ni~~~~~~ 333 (445)
-...|+||.+.-... .-.| +.+++ ...-..+.|.|+++....
T Consensus 382 -----a~avFq~C~I~~~~~~~~~g~I-TAq~R~~~~~~~Gfvf~~C~it~~~ 428 (529)
T PLN02170 382 -----SAVVFQSCNIAARKPSGDRNYV-TAQGRSDPNQNTGISIHNCRITAES 428 (529)
T ss_pred -----ceEEEeccEEEEecCCCCceEE-EecCCCCCCCCceEEEEeeEEecCC
Confidence 267888888864321 1223 33332 233457889999998743
No 89
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=82.84 E-value=17 Score=38.67 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=71.9
Q ss_pred EEceecEEEEeEEEECCCCCCCCCceeee-ceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcC
Q 013309 207 FTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSN 285 (445)
Q Consensus 207 ~~~~~nv~I~n~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~ 285 (445)
....+++..+|++|.+.........+.+. .++.+.+.+|.|....|.+..++ ..-.++||.+.+.-.+-+|.
T Consensus 315 ~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~--~rqyy~~C~I~GtVDFIFG~----- 387 (537)
T PLN02506 315 AVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHS--LRQFYRECEIYGTIDFIFGN----- 387 (537)
T ss_pred EEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecC--CceEEEeeEEecccceEccC-----
Confidence 34567788888888875432233344433 26788889999988777776655 34588899888777777776
Q ss_pred CCccEEeEEEEcEEEeCCcc----eEEEEEecCC--CceeeeEEEEeEEEec
Q 013309 286 SSVRIHDIMVYGALISNTQN----GVRIKTWQGG--SGSATNIQFLDVLMKN 331 (445)
Q Consensus 286 ~~~~v~nv~i~n~~~~~~~~----gi~i~~~~g~--~g~v~ni~~~ni~~~~ 331 (445)
....|+||++.-... .-.| +.+++ ...-..+.|.|+++..
T Consensus 388 -----a~avfq~C~i~~r~~~~~~~~~i-TA~~r~~~~~~~G~vf~~c~i~~ 433 (537)
T PLN02506 388 -----GAAVLQNCKIYTRVPLPLQKVTI-TAQGRKSPHQSTGFSIQDSYVLA 433 (537)
T ss_pred -----ceeEEeccEEEEccCCCCCCceE-EccCCCCCCCCcEEEEEcCEEcc
Confidence 267788888864211 1122 22332 1234577888888875
No 90
>PLN02176 putative pectinesterase
Probab=82.47 E-value=23 Score=35.25 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=12.3
Q ss_pred EeecceEEeceEEEcC
Q 013309 185 HKCKNLKVQNLRVVNS 200 (445)
Q Consensus 185 ~~~~nv~I~~v~i~ns 200 (445)
..++++..+|++|+|.
T Consensus 119 v~a~~F~a~nlT~~Nt 134 (340)
T PLN02176 119 SYASNIIITGITFKNT 134 (340)
T ss_pred EECCCEEEEeeEEEeC
Confidence 3578888888888876
No 91
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=82.38 E-value=22 Score=37.34 Aligned_cols=78 Identities=10% Similarity=0.014 Sum_probs=40.1
Q ss_pred EeecceEEeceEEEcCCCc----eeEE-EceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecCCccEEEeCC
Q 013309 185 HKCKNLKVQNLRVVNSQQM----HIAF-TNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGN 259 (445)
Q Consensus 185 ~~~~nv~I~~v~i~ns~~~----~i~~-~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~~ 259 (445)
...+++..+|++|+|.... .+-+ ...+...+.+|.|.+..|. +..... .-..++|.|...=|-| + |
T Consensus 267 v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDT-----Ly~~~~-rqyy~~C~I~G~vDFI-F--G 337 (497)
T PLN02698 267 ITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDT-----LYAAAL-RQFYRECDIYGTIDFI-F--G 337 (497)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccch-----heeCCC-cEEEEeeEEEeccceE-e--c
Confidence 4567778888888776431 2222 2355666666666653332 222221 2355666666433332 1 2
Q ss_pred ceeEEEEeeEEc
Q 013309 260 SSLIRIRNFACG 271 (445)
Q Consensus 260 ~~ni~I~n~~~~ 271 (445)
.....++||++.
T Consensus 338 ~a~avf~~C~i~ 349 (497)
T PLN02698 338 NAAAVFQNCYLF 349 (497)
T ss_pred ccceeecccEEE
Confidence 345566666653
No 92
>PLN02773 pectinesterase
Probab=81.63 E-value=42 Score=33.15 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=76.2
Q ss_pred ceecEEEEeEEEECCCCCCCCCceeee-ceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCCC
Q 013309 209 NCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSS 287 (445)
Q Consensus 209 ~~~nv~I~n~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~~ 287 (445)
.++++..+|++|.+...........+. .++.+.+.||.|...-|.+..+. ..-.++||.+.+.-.+-+|.
T Consensus 100 ~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~--gr~yf~~c~IeG~VDFIFG~------- 170 (317)
T PLN02773 100 EGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHY--GKQYLRDCYIEGSVDFIFGN------- 170 (317)
T ss_pred ECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCC--CCEEEEeeEEeecccEEeec-------
Confidence 467888999999985322222333333 25789999999999888887654 46889999998887777776
Q ss_pred ccEEeEEEEcEEEeCCcceEEEEEecCCC--ceeeeEEEEeEEEecCC
Q 013309 288 VRIHDIMVYGALISNTQNGVRIKTWQGGS--GSATNIQFLDVLMKNVS 333 (445)
Q Consensus 288 ~~v~nv~i~n~~~~~~~~gi~i~~~~g~~--g~v~ni~~~ni~~~~~~ 333 (445)
-...|++|++.....|. | +.+++. ..-....|.|+++....
T Consensus 171 ---g~a~Fe~c~i~s~~~g~-I-TA~~r~~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 171 ---STALLEHCHIHCKSAGF-I-TAQSRKSSQESTGYVFLRCVITGNG 213 (317)
T ss_pred ---cEEEEEeeEEEEccCcE-E-ECCCCCCCCCCceEEEEccEEecCC
Confidence 26789999987654442 3 222211 12346789999998753
No 93
>PLN02197 pectinesterase
Probab=80.70 E-value=24 Score=37.83 Aligned_cols=113 Identities=12% Similarity=0.078 Sum_probs=68.6
Q ss_pred EceecEEEEeEEEECCCCCCCCCceeee-ceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCC
Q 013309 208 TNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNS 286 (445)
Q Consensus 208 ~~~~nv~I~n~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~ 286 (445)
...+++..+|++|.+.........+.+. .++...+.+|.|....|.+..++ ..-.++||++.+.-.+=+|.
T Consensus 361 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 432 (588)
T PLN02197 361 VESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNN--GRQFYRNIVVSGTVDFIFGK------ 432 (588)
T ss_pred EECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecC--CCEEEEeeEEEecccccccc------
Confidence 3456777788888774322233444443 25778888888888777776655 23478888887766666665
Q ss_pred CccEEeEEEEcEEEeCCc--ceE-EEEEecCCC---ceeeeEEEEeEEEecC
Q 013309 287 SVRIHDIMVYGALISNTQ--NGV-RIKTWQGGS---GSATNIQFLDVLMKNV 332 (445)
Q Consensus 287 ~~~v~nv~i~n~~~~~~~--~gi-~i~~~~g~~---g~v~ni~~~ni~~~~~ 332 (445)
....|+||++.-.. .|. ..-+.+++. ..-..+.|.|+++...
T Consensus 433 ----a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~ 480 (588)
T PLN02197 433 ----SATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPD 480 (588)
T ss_pred ----eeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecC
Confidence 25778888875321 111 111334431 2345788888888764
No 94
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=79.95 E-value=37 Score=35.90 Aligned_cols=112 Identities=10% Similarity=-0.000 Sum_probs=69.6
Q ss_pred EceecEEEEeEEEECCCCCCCCCceeee-ceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCC
Q 013309 208 TNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNS 286 (445)
Q Consensus 208 ~~~~nv~I~n~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~ 286 (445)
...+++..+|++|.+.........+.+. .++...+.+|.|....|.+..+. ..-.++||++.+.-.+=+|.
T Consensus 290 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 361 (520)
T PLN02201 290 VSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHT--MRQFYRECRITGTVDFIFGD------ 361 (520)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCC--CCEEEEeeEEeecccEEecC------
Confidence 3456777888888875432233444443 25778888888888777776655 23467888888777777765
Q ss_pred CccEEeEEEEcEEEeCCc----ceEEEEEecCC--CceeeeEEEEeEEEecC
Q 013309 287 SVRIHDIMVYGALISNTQ----NGVRIKTWQGG--SGSATNIQFLDVLMKNV 332 (445)
Q Consensus 287 ~~~v~nv~i~n~~~~~~~----~gi~i~~~~g~--~g~v~ni~~~ni~~~~~ 332 (445)
-...|+||++.-.. ..-.| +.+++ ...-..+.|.|+++...
T Consensus 362 ----a~avf~~C~i~~~~~~~~~~~~i-TAq~r~~~~~~~Gfvf~~C~it~~ 408 (520)
T PLN02201 362 ----ATAVFQNCQILAKKGLPNQKNTI-TAQGRKDPNQPTGFSIQFSNISAD 408 (520)
T ss_pred ----ceEEEEccEEEEecCCCCCCceE-EecCCCCCCCCcEEEEEeeEEecC
Confidence 26778888876421 11122 22332 23345788888888753
No 95
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=79.79 E-value=24 Score=37.47 Aligned_cols=112 Identities=10% Similarity=0.067 Sum_probs=69.3
Q ss_pred ceecEEEEeEEEECCCCCCCCCceeee-ceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCCC
Q 013309 209 NCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSS 287 (445)
Q Consensus 209 ~~~nv~I~n~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~~ 287 (445)
..+++..+|++|.+.........+.+. .++.+.+.+|.|....|.+..++ ..-.+++|.+.+.-.+=+|.
T Consensus 315 ~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 385 (541)
T PLN02416 315 SGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS--FRQFYRECDIYGTIDYIFGN------- 385 (541)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC--CceEEEeeEEeeccceeecc-------
Confidence 467788888888875432233444433 25778888888888777766554 34588888888776777765
Q ss_pred ccEEeEEEEcEEEeCCcc--e-EEEEEecCC--CceeeeEEEEeEEEecC
Q 013309 288 VRIHDIMVYGALISNTQN--G-VRIKTWQGG--SGSATNIQFLDVLMKNV 332 (445)
Q Consensus 288 ~~v~nv~i~n~~~~~~~~--g-i~i~~~~g~--~g~v~ni~~~ni~~~~~ 332 (445)
-...|+||++.-... | ...-+.+++ ...-..+.|.|+++...
T Consensus 386 ---a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 432 (541)
T PLN02416 386 ---AAVVFQACNIVSKMPMPGQFTVITAQSRDTPDEDTGISIQNCSILAT 432 (541)
T ss_pred ---ceEEEeccEEEEecCCCCCceEEECCCCCCCCCCCEEEEEeeEEecC
Confidence 267788888754211 1 011133332 12335788888888753
No 96
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=79.47 E-value=21 Score=38.78 Aligned_cols=111 Identities=11% Similarity=0.031 Sum_probs=71.9
Q ss_pred ceecEEEEeEEEECCCCCCCCCceeee-ceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCCC
Q 013309 209 NCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSS 287 (445)
Q Consensus 209 ~~~nv~I~n~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~~ 287 (445)
..+++..+|++|.+.........+.+. .++...+.+|.|....|.+..+. ..-.+++|.+.+.-.+-+|.
T Consensus 335 ~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 405 (670)
T PLN02217 335 VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS--HRQFYRDCTISGTIDFLFGD------- 405 (670)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC--CcEEEEeCEEEEeccEEecC-------
Confidence 356777888888875432333444443 25778888888888777776654 34578888887776676665
Q ss_pred ccEEeEEEEcEEEeCCc----ceEEEEEecCCC--ceeeeEEEEeEEEecC
Q 013309 288 VRIHDIMVYGALISNTQ----NGVRIKTWQGGS--GSATNIQFLDVLMKNV 332 (445)
Q Consensus 288 ~~v~nv~i~n~~~~~~~----~gi~i~~~~g~~--g~v~ni~~~ni~~~~~ 332 (445)
....|+||++.-.. ..-.| +.+++. ..-..+.|.|+++...
T Consensus 406 ---a~avfq~C~I~~r~~~~~~~~~I-TAqgr~~~~~~tGfvf~~C~i~~~ 452 (670)
T PLN02217 406 ---AAAVFQNCTLLVRKPLLNQACPI-TAHGRKDPRESTGFVLQGCTIVGE 452 (670)
T ss_pred ---ceEEEEccEEEEccCCCCCceeE-ecCCCCCCCCCceEEEEeeEEecC
Confidence 26788999986421 11223 333332 3446789999999874
No 97
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=79.32 E-value=27 Score=37.35 Aligned_cols=112 Identities=10% Similarity=0.021 Sum_probs=72.9
Q ss_pred EceecEEEEeEEEECCCCCCCCCceeee-ceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCC
Q 013309 208 TNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNS 286 (445)
Q Consensus 208 ~~~~nv~I~n~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~ 286 (445)
...+++..+|++|.+......+..+.+. .++...+.+|.|....|.+..++ ..-.++||.+.+.-.+=+|.
T Consensus 342 v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~------ 413 (565)
T PLN02468 342 VFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHA--QRQFYRECNIYGTVDFIFGN------ 413 (565)
T ss_pred EECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCC--CceEEEeeEEecccceeecc------
Confidence 3457788889988875432233444443 36788899999988777776665 33468899888877777776
Q ss_pred CccEEeEEEEcEEEeCCcc----eEEEEEecCC--CceeeeEEEEeEEEecC
Q 013309 287 SVRIHDIMVYGALISNTQN----GVRIKTWQGG--SGSATNIQFLDVLMKNV 332 (445)
Q Consensus 287 ~~~v~nv~i~n~~~~~~~~----gi~i~~~~g~--~g~v~ni~~~ni~~~~~ 332 (445)
..+.|+||++.-... .-.| +.+++ ...-..+.|.|+++...
T Consensus 414 ----a~avfq~c~i~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~c~i~~~ 460 (565)
T PLN02468 414 ----SAVVFQNCNILPRRPMKGQQNTI-TAQGRTDPNQNTGISIQNCTILPL 460 (565)
T ss_pred ----ceEEEeccEEEEecCCCCCCceE-EecCCCCCCCCceEEEEccEEecC
Confidence 377888888853211 1122 23332 23445788999998864
No 98
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=79.32 E-value=33 Score=36.93 Aligned_cols=111 Identities=13% Similarity=0.015 Sum_probs=67.9
Q ss_pred ceecEEEEeEEEECCCCCCCCCceeee-ceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCCC
Q 013309 209 NCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSS 287 (445)
Q Consensus 209 ~~~nv~I~n~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~~ 287 (445)
..+++..+|++|.+.........+.+. .++...+.+|.|...-|.+..+. ..-.++||++.+.-.+=+|.
T Consensus 370 ~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 440 (596)
T PLN02745 370 LGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT--HRQFYRSCVITGTIDFIFGD------- 440 (596)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC--CcEEEEeeEEEeeccEEecc-------
Confidence 456777788888874322223333333 25778888888888777766554 34578888887776666665
Q ss_pred ccEEeEEEEcEEEeCCc----ceEEEEEecCC--CceeeeEEEEeEEEecC
Q 013309 288 VRIHDIMVYGALISNTQ----NGVRIKTWQGG--SGSATNIQFLDVLMKNV 332 (445)
Q Consensus 288 ~~v~nv~i~n~~~~~~~----~gi~i~~~~g~--~g~v~ni~~~ni~~~~~ 332 (445)
....|+||.+.-.. ..-.| +.+++ ...-..+.|.|+++...
T Consensus 441 ---a~avf~~C~i~~~~~~~~~~~~i-TAq~r~~~~~~~Gfvf~~c~i~~~ 487 (596)
T PLN02745 441 ---AAAIFQNCLIFVRKPLPNQQNTV-TAQGRVDKFETTGIVLQNCRIAPD 487 (596)
T ss_pred ---eeEEEEecEEEEecCCCCCCceE-EecCCCCCCCCceEEEEeeEEecC
Confidence 36778888875321 01122 23332 12345788888888764
No 99
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=78.91 E-value=30 Score=37.26 Aligned_cols=112 Identities=12% Similarity=0.062 Sum_probs=68.0
Q ss_pred ceecEEEEeEEEECCCCCCCCCceeee-ceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCCC
Q 013309 209 NCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSS 287 (445)
Q Consensus 209 ~~~nv~I~n~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~~ 287 (445)
..+++..+|++|.+.........+.+. .++...+.+|.|....|.+..+++ .-.+++|.+.+.-.+-+|.
T Consensus 360 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~--rq~y~~c~I~GtvDFIFG~------- 430 (587)
T PLN02313 360 VGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSN--RQFFVKCHITGTVDFIFGN------- 430 (587)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCC--cEEEEeeEEeeccceeccc-------
Confidence 456777788888775432233334433 256778888888887777766652 3378888887776666665
Q ss_pred ccEEeEEEEcEEEeCCcc--e-EEEEEecCC--CceeeeEEEEeEEEecC
Q 013309 288 VRIHDIMVYGALISNTQN--G-VRIKTWQGG--SGSATNIQFLDVLMKNV 332 (445)
Q Consensus 288 ~~v~nv~i~n~~~~~~~~--g-i~i~~~~g~--~g~v~ni~~~ni~~~~~ 332 (445)
..+.|+||.+.-... | -..-+.+++ ...-..+.|.|+++...
T Consensus 431 ---a~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~ 477 (587)
T PLN02313 431 ---AAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGT 477 (587)
T ss_pred ---eeEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecC
Confidence 367788888864211 1 111233332 12345788888888754
No 100
>PLN02314 pectinesterase
Probab=78.59 E-value=28 Score=37.50 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=70.2
Q ss_pred ceecEEEEeEEEECCCCCCCCCceeee-ceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCCC
Q 013309 209 NCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSS 287 (445)
Q Consensus 209 ~~~nv~I~n~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~~ 287 (445)
..+++..+|++|.+.........+.+. .++...+.+|.|....|.+..+++ .-.++||++.+.-.+=+|.
T Consensus 363 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtvDFIFG~------- 433 (586)
T PLN02314 363 AGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSN--RQFYRDCDITGTIDFIFGN------- 433 (586)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCCC--CEEEEeeEEEeccceeccC-------
Confidence 456778888888875332233344433 256788888888887777766652 3478888887776677765
Q ss_pred ccEEeEEEEcEEEeCCcc--e-EEEEEecCC--CceeeeEEEEeEEEecCC
Q 013309 288 VRIHDIMVYGALISNTQN--G-VRIKTWQGG--SGSATNIQFLDVLMKNVS 333 (445)
Q Consensus 288 ~~v~nv~i~n~~~~~~~~--g-i~i~~~~g~--~g~v~ni~~~ni~~~~~~ 333 (445)
....|+||.+.-... + -..-+.+++ ...-..+.|.|+++....
T Consensus 434 ---a~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 434 ---AAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred ---ceeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecCC
Confidence 267788888853210 0 011233333 234457889999887643
No 101
>PLN02432 putative pectinesterase
Probab=78.41 E-value=43 Score=32.69 Aligned_cols=18 Identities=11% Similarity=-0.008 Sum_probs=13.1
Q ss_pred EEeecceEEeceEEEcCC
Q 013309 184 FHKCKNLKVQNLRVVNSQ 201 (445)
Q Consensus 184 ~~~~~nv~I~~v~i~ns~ 201 (445)
....+++..+|++|+|..
T Consensus 90 ~v~a~~f~a~nlt~~Nt~ 107 (293)
T PLN02432 90 SVLASDFVGRFLTIQNTF 107 (293)
T ss_pred EEECCCeEEEeeEEEeCC
Confidence 445678888888888763
No 102
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=78.14 E-value=38 Score=36.06 Aligned_cols=112 Identities=10% Similarity=0.055 Sum_probs=69.9
Q ss_pred EceecEEEEeEEEECCCCCCCCCceeee-ceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCC
Q 013309 208 TNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNS 286 (445)
Q Consensus 208 ~~~~nv~I~n~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~ 286 (445)
...+++..+|++|.+.........+.+. .++...+.+|.|....|.+..++ ..-..+||.+.+.-.+=+|.
T Consensus 310 v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~--~rq~y~~c~I~GtVDFIFG~------ 381 (538)
T PLN03043 310 VSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHS--LRQFYRECDIYGTVDFIFGN------ 381 (538)
T ss_pred EECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCC--CcEEEEeeEEeeccceEeec------
Confidence 3457788888888875432233444443 25678888888888777776655 23578888888777777765
Q ss_pred CccEEeEEEEcEEEeCCc----ceEEEEEecCC--CceeeeEEEEeEEEecC
Q 013309 287 SVRIHDIMVYGALISNTQ----NGVRIKTWQGG--SGSATNIQFLDVLMKNV 332 (445)
Q Consensus 287 ~~~v~nv~i~n~~~~~~~----~gi~i~~~~g~--~g~v~ni~~~ni~~~~~ 332 (445)
..+.|+||++.-.. ..-.| +.+++ ...-..+.|.|+++...
T Consensus 382 ----a~avfq~c~i~~r~~~~~~~~~i-TA~~r~~~~~~tG~~~~~c~i~~~ 428 (538)
T PLN03043 382 ----AAAIFQNCNLYARKPMANQKNAF-TAQGRTDPNQNTGISIINCTIEAA 428 (538)
T ss_pred ----ceeeeeccEEEEecCCCCCCceE-EecCCCCCCCCceEEEEecEEecC
Confidence 36778888885421 01112 22322 12335788888888764
No 103
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=77.48 E-value=29 Score=36.86 Aligned_cols=111 Identities=13% Similarity=0.067 Sum_probs=63.4
Q ss_pred ceecEEEEeEEEECCCCCCCCCceeee-ceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCCC
Q 013309 209 NCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSS 287 (445)
Q Consensus 209 ~~~nv~I~n~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~~ 287 (445)
..+++..+|++|.+.........+.+. .++...+.+|.|....|.+..++ ..-.++||.+.+.-.+=+|.
T Consensus 310 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 380 (539)
T PLN02995 310 EGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS--QRQFYRECYIYGTVDFIFGN------- 380 (539)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC--CceEEEeeEEeeccceEecc-------
Confidence 356667777777764322223334433 25677777888777666665554 23477777777666666664
Q ss_pred ccEEeEEEEcEEEeCCcc--e--EEEEEecCC--CceeeeEEEEeEEEecC
Q 013309 288 VRIHDIMVYGALISNTQN--G--VRIKTWQGG--SGSATNIQFLDVLMKNV 332 (445)
Q Consensus 288 ~~v~nv~i~n~~~~~~~~--g--i~i~~~~g~--~g~v~ni~~~ni~~~~~ 332 (445)
....|+||++.-... | -.| +.+++ ...-..+.|.|+++...
T Consensus 381 ---a~avf~~C~i~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~c~i~~~ 427 (539)
T PLN02995 381 ---AAAVFQNCIILPRRPLKGQANVI-TAQGRADPFQNTGISIHNSRILPA 427 (539)
T ss_pred ---cceEEeccEEEEecCCCCCcceE-ecCCCCCCCCCceEEEEeeEEecC
Confidence 256677777753210 1 122 22332 12345777888888764
No 104
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=77.34 E-value=33 Score=36.91 Aligned_cols=111 Identities=10% Similarity=0.039 Sum_probs=69.0
Q ss_pred ceecEEEEeEEEECCCCCCCCCceeee-ceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCCC
Q 013309 209 NCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSS 287 (445)
Q Consensus 209 ~~~nv~I~n~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~~ 287 (445)
..+++..+|++|.+.........+.+. .++...+.+|.|....|.+..++ ..-.++||++.+.-.+=+|.
T Consensus 358 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 428 (587)
T PLN02484 358 TGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHS--NRQFFRECDIYGTVDFIFGN------- 428 (587)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCC--CcEEEEecEEEeccceeccc-------
Confidence 456777888888875432233444433 25778888888888777776654 34478888887776666665
Q ss_pred ccEEeEEEEcEEEeCCc----ceEEEEEecCC--CceeeeEEEEeEEEecC
Q 013309 288 VRIHDIMVYGALISNTQ----NGVRIKTWQGG--SGSATNIQFLDVLMKNV 332 (445)
Q Consensus 288 ~~v~nv~i~n~~~~~~~----~gi~i~~~~g~--~g~v~ni~~~ni~~~~~ 332 (445)
-...|+||++.-.. ..-.| +.+++ ...-..+.|.|+++...
T Consensus 429 ---a~avfq~C~i~~~~~~~~~~~~I-TAq~r~~~~~~~G~vf~~c~i~~~ 475 (587)
T PLN02484 429 ---AAVVLQNCSIYARKPMAQQKNTI-TAQNRKDPNQNTGISIHACRILAA 475 (587)
T ss_pred ---ceeEEeccEEEEecCCCCCceEE-EecCCCCCCCCcEEEEEeeEEecC
Confidence 36778888885421 11122 23332 13345788999988753
No 105
>PLN02671 pectinesterase
Probab=76.78 E-value=49 Score=33.25 Aligned_cols=18 Identities=6% Similarity=0.036 Sum_probs=13.1
Q ss_pred EEEeecceEEeceEEEcC
Q 013309 183 TFHKCKNLKVQNLRVVNS 200 (445)
Q Consensus 183 ~~~~~~nv~I~~v~i~ns 200 (445)
.....++++.+|++|+|.
T Consensus 149 v~v~a~~F~a~nitfeNt 166 (359)
T PLN02671 149 VTIESDYFCATGITFENT 166 (359)
T ss_pred EEEECCceEEEeeEEEcC
Confidence 445567888888888876
No 106
>PLN02304 probable pectinesterase
Probab=75.99 E-value=65 Score=32.60 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=12.4
Q ss_pred EEEeecceEEeceEEEcC
Q 013309 183 TFHKCKNLKVQNLRVVNS 200 (445)
Q Consensus 183 ~~~~~~nv~I~~v~i~ns 200 (445)
.....+++..+|++|+|.
T Consensus 157 v~v~a~~F~a~nITf~Nt 174 (379)
T PLN02304 157 VQVFASNFIAKNISFMNV 174 (379)
T ss_pred EEEECCCeEEEeeEEEec
Confidence 334467777788887775
No 107
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=74.93 E-value=73 Score=33.57 Aligned_cols=114 Identities=10% Similarity=0.044 Sum_probs=76.0
Q ss_pred EceecEEEEeEEEECCCCCCCCCceeee-ceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCC
Q 013309 208 TNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNS 286 (445)
Q Consensus 208 ~~~~nv~I~n~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~ 286 (445)
...+++..+|++|.+.........+.+. .++...+.+|.|...-|.+..+.+ .-.++||.+.+.-.+-+|.
T Consensus 267 v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~--rqyy~~C~I~G~vDFIFG~------ 338 (497)
T PLN02698 267 ITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAAL--RQFYRECDIYGTIDFIFGN------ 338 (497)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCC--cEEEEeeEEEeccceEecc------
Confidence 3567888999999985432233444443 268899999999998888877653 3489999998777777776
Q ss_pred CccEEeEEEEcEEEeCCcc--e-EEEEEecCC--CceeeeEEEEeEEEecCC
Q 013309 287 SVRIHDIMVYGALISNTQN--G-VRIKTWQGG--SGSATNIQFLDVLMKNVS 333 (445)
Q Consensus 287 ~~~v~nv~i~n~~~~~~~~--g-i~i~~~~g~--~g~v~ni~~~ni~~~~~~ 333 (445)
....|+||++.-... + -..-+.+++ ...-..+.|.|+++....
T Consensus 339 ----a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~ 386 (497)
T PLN02698 339 ----AAAVFQNCYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTSS 386 (497)
T ss_pred ----cceeecccEEEEecCCCCCceEEEecCCCCCCCCceEEEEeeEEecCC
Confidence 256888888864211 1 011133332 234467889999998643
No 108
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=74.03 E-value=10 Score=38.30 Aligned_cols=74 Identities=19% Similarity=0.211 Sum_probs=38.8
Q ss_pred ceeEEEEeeEEcCC--ceEEEeecCC---c------------CCCccEEeEEEEcEEEeCCcceEEEEEecCCCceeeeE
Q 013309 260 SSLIRIRNFACGPG--HGISIGSLGK---S------------NSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNI 322 (445)
Q Consensus 260 ~~ni~I~n~~~~~~--~gi~igs~g~---~------------~~~~~v~nv~i~n~~~~~~~~gi~i~~~~g~~g~v~ni 322 (445)
+.|..++|...-.. +|+-+++--. . .-..--.|=.|+|+...++ .|+.+. ++|.+++++||
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~-lGVG~~-~DG~~~yvsni 340 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGS-LGVGIG-MDGKGGYVSNI 340 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES--SSESCE-EECCS-EEEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheecc-ceeeee-ecCCCceEeeE
Confidence 56888888875332 4677765210 0 0011113446888888876 566554 46778899998
Q ss_pred EEEeEEEecCCccEEEE
Q 013309 323 QFLDVLMKNVSNPIIID 339 (445)
Q Consensus 323 ~~~ni~~~~~~~~i~i~ 339 (445)
+.+++.-. ++++.
T Consensus 341 ~~~d~~g~----G~~~~ 353 (549)
T PF09251_consen 341 TVQDCAGA----GIFIR 353 (549)
T ss_dssp EEES-SSE----SEEEE
T ss_pred EeecccCC----ceEEe
Confidence 88876444 45554
No 109
>PLN02916 pectinesterase family protein
Probab=73.25 E-value=98 Score=32.62 Aligned_cols=112 Identities=12% Similarity=0.017 Sum_probs=77.6
Q ss_pred EceecEEEEeEEEECCCCCCCCCceeee-ceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCC
Q 013309 208 TNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNS 286 (445)
Q Consensus 208 ~~~~nv~I~n~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~ 286 (445)
...+++..+|++|.+.........+.+. .++...+.+|.|...-|.+..++ ..-.+++|.+.+.-.+=+|.
T Consensus 274 v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 345 (502)
T PLN02916 274 VSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHS--LRQFYRDCHIYGTIDFIFGD------ 345 (502)
T ss_pred EECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCC--CCEEEEecEEecccceeccC------
Confidence 4467888999999985433334444444 36889999999999888887765 34588999999887777776
Q ss_pred CccEEeEEEEcEEEeCCc----ceEEEEEecCC--CceeeeEEEEeEEEecC
Q 013309 287 SVRIHDIMVYGALISNTQ----NGVRIKTWQGG--SGSATNIQFLDVLMKNV 332 (445)
Q Consensus 287 ~~~v~nv~i~n~~~~~~~----~gi~i~~~~g~--~g~v~ni~~~ni~~~~~ 332 (445)
....|+||.+.-.. ..-.| +.+++ ...-..+.|.|+++...
T Consensus 346 ----a~avFq~C~I~~~~~~~~~~g~I-TAq~r~~~~~~tGfvf~~C~it~~ 392 (502)
T PLN02916 346 ----AAVVFQNCDIFVRRPMDHQGNMI-TAQGRDDPHENTGISIQHSRVRAS 392 (502)
T ss_pred ----ceEEEecCEEEEecCCCCCcceE-EecCCCCCCCCcEEEEEeeEEecC
Confidence 37788999885421 11223 33332 23446888999999864
No 110
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=73.07 E-value=72 Score=28.77 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=52.5
Q ss_pred ecEEEEeeEEec-CC-------ccEEEeCCceeEEEEeeEEcCCceEEEeec---CCcCCCccEEeEEEEcEEEeCCc--
Q 013309 238 RGVEVKNSIVGT-GD-------DCISIVGNSSLIRIRNFACGPGHGISIGSL---GKSNSSVRIHDIMVYGALISNTQ-- 304 (445)
Q Consensus 238 ~nv~I~n~~i~~-gd-------D~i~i~~~~~ni~I~n~~~~~~~gi~igs~---g~~~~~~~v~nv~i~n~~~~~~~-- 304 (445)
++|.|++..|.. |- .+| +.+|..|.+|||+.|.+..+.+|... +.....+.-.-.+++|+.|.++.
T Consensus 34 ~nVhIhhN~fY~tGtn~~~~wvGGI-v~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~~r 112 (198)
T PF08480_consen 34 KNVHIHHNIFYDTGTNPNIDWVGGI-VTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTRKR 112 (198)
T ss_pred ccEEEECcEeecCCcCCCCceeeeE-EeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeeeec
Confidence 577777777653 21 122 33467899999999987653222221 10111223344788998888764
Q ss_pred ------ceEEEEEecCCCceeeeEEEEeEEEecCCc
Q 013309 305 ------NGVRIKTWQGGSGSATNIQFLDVLMKNVSN 334 (445)
Q Consensus 305 ------~gi~i~~~~g~~g~v~ni~~~ni~~~~~~~ 334 (445)
.|-.|... -..-..+.++|..+.+...
T Consensus 113 ~~~~~GtGYgv~N~---L~~tHsFvLenNclYnN~a 145 (198)
T PF08480_consen 113 KSSPAGTGYGVINY---LPETHSFVLENNCLYNNAA 145 (198)
T ss_pred ccCCCCceeEEEec---CCCcceEEEEccceeccCc
Confidence 13333321 1123678888888887543
No 111
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=73.03 E-value=74 Score=34.12 Aligned_cols=112 Identities=11% Similarity=0.020 Sum_probs=78.2
Q ss_pred EceecEEEEeEEEECCCCCCCCCceeee-ceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCC
Q 013309 208 TNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNS 286 (445)
Q Consensus 208 ~~~~nv~I~n~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~ 286 (445)
...+++..+|++|.+.........+.+. .++...+.+|.|....|.+..++ ..-.++||++.+.-.+=+|.
T Consensus 337 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 408 (566)
T PLN02713 337 VVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHS--LRQFYRECDIYGTVDFIFGN------ 408 (566)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECC--CCEEEEeeEEecccceeccc------
Confidence 4568899999999985433334445443 36789999999999888887765 34599999998887777776
Q ss_pred CccEEeEEEEcEEEeCCc----ceEEEEEecCC--CceeeeEEEEeEEEecC
Q 013309 287 SVRIHDIMVYGALISNTQ----NGVRIKTWQGG--SGSATNIQFLDVLMKNV 332 (445)
Q Consensus 287 ~~~v~nv~i~n~~~~~~~----~gi~i~~~~g~--~g~v~ni~~~ni~~~~~ 332 (445)
-.+.|+||.+.-.. ..-.| +.+++ ...-..+.|.|+++...
T Consensus 409 ----a~avfq~C~i~~~~~~~~~~~~i-TAq~r~~~~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 409 ----AAVVFQNCNLYPRLPMQGQFNTI-TAQGRTDPNQNTGTSIQNCTIKAA 455 (566)
T ss_pred ----ceEEEeccEEEEecCCCCCccee-eecCCCCCCCCCEEEEEcCEEecC
Confidence 37889999985421 11122 22332 23346789999999864
No 112
>PLN02682 pectinesterase family protein
Probab=64.35 E-value=1.7e+02 Score=29.64 Aligned_cols=136 Identities=10% Similarity=0.109 Sum_probs=69.5
Q ss_pred EEEEEeecceEEeceEEEcCCCc---------eeEE-EceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecC
Q 013309 181 AITFHKCKNLKVQNLRVVNSQQM---------HIAF-TNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTG 250 (445)
Q Consensus 181 ~i~~~~~~nv~I~~v~i~ns~~~---------~i~~-~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~g 250 (445)
.-.....+++..+|++|+|.... .+-+ ...+...+.+|++.+..|. +... ...-..+||.|...
T Consensus 156 AT~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDT-----Ly~~-~gRqyf~~C~IeG~ 229 (369)
T PLN02682 156 ATFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDT-----LYDH-LGRHYFKDCYIEGS 229 (369)
T ss_pred eEEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccc-----eEEC-CCCEEEEeeEEccc
Confidence 34455678999999999986421 2222 2366677777777764432 2111 22456677777654
Q ss_pred CccEEEeCCceeEEEEeeEEcC---Cce-EEEeecCCcCCCccEEeEEEEcEEEeCCcceEEEEEecCCCceeeeEEEEe
Q 013309 251 DDCISIVGNSSLIRIRNFACGP---GHG-ISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLD 326 (445)
Q Consensus 251 dD~i~i~~~~~ni~I~n~~~~~---~~g-i~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~i~~~~g~~g~v~ni~~~n 326 (445)
=|-| -|.....+++|++.. ..| |.-- +. .....-....|.||++.+.. -+.+. ++. ..-..++|.|
T Consensus 230 VDFI---FG~g~a~Fe~C~I~s~~~~~G~ITA~--~r-~~~~~~~GfvF~~C~itg~g-~~yLG-RpW--~~yarvVf~~ 299 (369)
T PLN02682 230 VDFI---FGNGLSLYEGCHLHAIARNFGALTAQ--KR-QSVLEDTGFSFVNCKVTGSG-ALYLG-RAW--GTFSRVVFAY 299 (369)
T ss_pred ccEE---ecCceEEEEccEEEEecCCCeEEecC--CC-CCCCCCceEEEEeeEecCCC-ceEee-cCC--CCcceEEEEe
Confidence 4433 223466777776642 123 2211 11 11122346667777776542 12221 111 1234666666
Q ss_pred EEEecC
Q 013309 327 VLMKNV 332 (445)
Q Consensus 327 i~~~~~ 332 (445)
..|.+.
T Consensus 300 t~m~~~ 305 (369)
T PLN02682 300 TYMDNI 305 (369)
T ss_pred ccCCCc
Confidence 666653
No 113
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=63.53 E-value=2e+02 Score=30.33 Aligned_cols=112 Identities=10% Similarity=-0.035 Sum_probs=78.4
Q ss_pred ceecEEEEeEEEECCCCCCCCCceeee-ceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCCC
Q 013309 209 NCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSS 287 (445)
Q Consensus 209 ~~~nv~I~n~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~~ 287 (445)
..+++..+|++|.+.........+.+. .++...+.+|.|...-|.+..++ ..-.+++|.+.+.-.+-+|.
T Consensus 282 ~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~--~RqyyrdC~I~GtVDFIFG~------- 352 (509)
T PLN02488 282 NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR--DRQFYRECFITGTVDFICGN------- 352 (509)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC--CCEEEEeeEEeeccceEecc-------
Confidence 467788899999875432234455544 36889999999999888887665 45689999999887777776
Q ss_pred ccEEeEEEEcEEEeCCcc----eEEEEEecCCC--ceeeeEEEEeEEEecCC
Q 013309 288 VRIHDIMVYGALISNTQN----GVRIKTWQGGS--GSATNIQFLDVLMKNVS 333 (445)
Q Consensus 288 ~~v~nv~i~n~~~~~~~~----gi~i~~~~g~~--g~v~ni~~~ni~~~~~~ 333 (445)
..+.|+||++..... .-.| +.+++. ..-..+.|.|+++....
T Consensus 353 ---a~avFq~C~I~sr~~~~~~~~~I-TAq~R~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 353 ---AAAVFQFCQIVARQPMMGQSNVI-TAQSRESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred ---eEEEEEccEEEEecCCCCCCEEE-EeCCCCCCCCCcEEEEEeeEEecCC
Confidence 378899999864311 1123 334432 33457899999998753
No 114
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=59.07 E-value=41 Score=31.88 Aligned_cols=94 Identities=18% Similarity=0.220 Sum_probs=66.6
Q ss_pred eEEEEEeecceEEeceEEEcC---CCceeEEEceecEEEEeEEEECCCCCCCCCceeeece------ecEEEEeeEEecC
Q 013309 180 TAITFHKCKNLKVQNLRVVNS---QQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISAS------RGVEVKNSIVGTG 250 (445)
Q Consensus 180 ~~i~~~~~~nv~I~~v~i~ns---~~~~i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s------~nv~I~n~~i~~g 250 (445)
..+.+....+.+|+++++.|+ ...++.+..+ +.+|+|++|.. ...+||.+... .++.|.+..+...
T Consensus 89 qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~----~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~ 163 (246)
T PF07602_consen 89 QNVTIILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTN----NGREGIFVTGTSANPGINGNVISGNSIYFN 163 (246)
T ss_pred eeEEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEEC----CccccEEEEeeecCCcccceEeecceEEec
Confidence 346777789999999999998 3457888777 99999999998 34678876654 3556666666665
Q ss_pred CccEEEeCCc--eeEEEEeeEEc-CCceEEE
Q 013309 251 DDCISIVGNS--SLIRIRNFACG-PGHGISI 278 (445)
Q Consensus 251 dD~i~i~~~~--~ni~I~n~~~~-~~~gi~i 278 (445)
..+|++.... .+..|+|+.+. +..||.+
T Consensus 164 ~~Gi~i~~~~~~~~n~I~NN~I~~N~~Gi~~ 194 (246)
T PF07602_consen 164 KTGISISDNAAPVENKIENNIIENNNIGIVA 194 (246)
T ss_pred CcCeEEEcccCCccceeeccEEEeCCcCeEe
Confidence 5677765421 22467888876 3457664
No 115
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=57.79 E-value=1.5e+02 Score=26.85 Aligned_cols=62 Identities=10% Similarity=0.083 Sum_probs=33.9
Q ss_pred cEEEEeeEEec-CCccEEEeC--------CceeEEEEeeEEcCCc---e--EEEeecCCcCCCccEEeEEEEcEEEeCCc
Q 013309 239 GVEVKNSIVGT-GDDCISIVG--------NSSLIRIRNFACGPGH---G--ISIGSLGKSNSSVRIHDIMVYGALISNTQ 304 (445)
Q Consensus 239 nv~I~n~~i~~-gdD~i~i~~--------~~~ni~I~n~~~~~~~---g--i~igs~g~~~~~~~v~nv~i~n~~~~~~~ 304 (445)
+|.|-|..|.. ..-+|.+-. ..+||.|.++.|+.+. . ..-|- ...++.|..|||+.|.+..
T Consensus 3 dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGI-----v~sGF~ntlIENNVfDG~y 77 (198)
T PF08480_consen 3 DIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGI-----VTSGFYNTLIENNVFDGVY 77 (198)
T ss_pred ceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeE-----EeccccccEEEeeeecccc
Confidence 56666666654 233444432 2458888888776421 1 11111 1224567788888877764
Q ss_pred c
Q 013309 305 N 305 (445)
Q Consensus 305 ~ 305 (445)
+
T Consensus 78 ~ 78 (198)
T PF08480_consen 78 H 78 (198)
T ss_pred c
Confidence 3
No 116
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=47.71 E-value=1.2e+02 Score=29.78 Aligned_cols=78 Identities=13% Similarity=0.073 Sum_probs=37.1
Q ss_pred EEeecceEEeceEEEcCCCc------eeEEEceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecCCccEEEe
Q 013309 184 FHKCKNLKVQNLRVVNSQQM------HIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIV 257 (445)
Q Consensus 184 ~~~~~nv~I~~v~i~ns~~~------~i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~ 257 (445)
....+++++++++|+|.... .+. ...+...+.+|.+.+.. |-+.... ....++||.|...-|-|.=
T Consensus 83 ~v~a~~f~~~nit~~Nt~g~~~~qAvAl~-~~~d~~~f~~c~~~g~Q-----DTL~~~~-~r~y~~~c~IeG~vDFIfG- 154 (298)
T PF01095_consen 83 SVNADDFTAENITFENTAGPSGGQAVALR-VSGDRAAFYNCRFLGYQ-----DTLYANG-GRQYFKNCYIEGNVDFIFG- 154 (298)
T ss_dssp EE-STT-EEEEEEEEEHCSGSG----SEE-ET-TSEEEEEEEEE-ST-----T-EEE-S-SEEEEES-EEEESEEEEEE-
T ss_pred cccccceeeeeeEEecCCCCcccceeeee-ecCCcEEEEEeEEcccc-----ceeeecc-ceeEEEeeEEEecCcEEEC-
Confidence 34578999999999885321 122 23455666666666532 2232222 2345566666654443311
Q ss_pred CCceeEEEEeeEEc
Q 013309 258 GNSSLIRIRNFACG 271 (445)
Q Consensus 258 ~~~~ni~I~n~~~~ 271 (445)
.....++||++.
T Consensus 155 --~~~a~f~~c~i~ 166 (298)
T PF01095_consen 155 --NGTAVFENCTIH 166 (298)
T ss_dssp --SSEEEEES-EEE
T ss_pred --CeeEEeeeeEEE
Confidence 224456666553
No 117
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=46.11 E-value=22 Score=19.68 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=11.7
Q ss_pred eEEEEcEEEeCCcc-eEEEE
Q 013309 292 DIMVYGALISNTQN-GVRIK 310 (445)
Q Consensus 292 nv~i~n~~~~~~~~-gi~i~ 310 (445)
+++|+++++.+... |+.+.
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i~ 22 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYIG 22 (26)
T ss_pred CEEEECCEEEeCCCCcEEEe
Confidence 56666666666555 66554
No 118
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=45.87 E-value=20 Score=28.63 Aligned_cols=13 Identities=15% Similarity=0.260 Sum_probs=6.4
Q ss_pred CcccchhHHHHHH
Q 013309 1 MKQLKFCSFSTFF 13 (445)
Q Consensus 1 M~~~~~~~~~~~~ 13 (445)
|.+|+|+++.++|
T Consensus 1 MaSK~~llL~l~L 13 (95)
T PF07172_consen 1 MASKAFLLLGLLL 13 (95)
T ss_pred CchhHHHHHHHHH
Confidence 7755555333333
No 119
>PLN02497 probable pectinesterase
Probab=43.93 E-value=3.4e+02 Score=27.01 Aligned_cols=79 Identities=13% Similarity=0.016 Sum_probs=44.1
Q ss_pred EEeecceEEeceEEEcCCCc-----------eeEE-EceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecCC
Q 013309 184 FHKCKNLKVQNLRVVNSQQM-----------HIAF-TNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGD 251 (445)
Q Consensus 184 ~~~~~nv~I~~v~i~ns~~~-----------~i~~-~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gd 251 (445)
....+++..+|++|+|.... .+-+ ...+...+.+|.+.+..|. +... ...-..++|.|...=
T Consensus 111 ~v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDT-----Ly~~-~gRqyf~~C~IeG~V 184 (331)
T PLN02497 111 STLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDT-----LWDS-DGRHYFKRCTIQGAV 184 (331)
T ss_pred EEecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccc-----eeeC-CCcEEEEeCEEEecc
Confidence 45678899999999886421 1221 2356666777777764432 2111 224566667666543
Q ss_pred ccEEEeCCceeEEEEeeEEc
Q 013309 252 DCISIVGNSSLIRIRNFACG 271 (445)
Q Consensus 252 D~i~i~~~~~ni~I~n~~~~ 271 (445)
|-| -|.....++||++.
T Consensus 185 DFI---FG~g~a~Fe~C~I~ 201 (331)
T PLN02497 185 DFI---FGSGQSIYESCVIQ 201 (331)
T ss_pred cEE---ccCceEEEEccEEE
Confidence 432 22345666666654
No 120
>PLN02634 probable pectinesterase
Probab=43.20 E-value=3.6e+02 Score=27.14 Aligned_cols=79 Identities=9% Similarity=0.039 Sum_probs=41.9
Q ss_pred EEeecceEEeceEEEcCCC---------ceeEE-EceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecCCcc
Q 013309 184 FHKCKNLKVQNLRVVNSQQ---------MHIAF-TNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDC 253 (445)
Q Consensus 184 ~~~~~nv~I~~v~i~ns~~---------~~i~~-~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~ 253 (445)
....+++..+|++|+|... ..+-+ ...+...+.+|.+....|. +... ...-..++|.|...=|-
T Consensus 145 ~V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDT-----L~~~-~gR~yf~~CyIeG~VDF 218 (359)
T PLN02634 145 TVYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDT-----LCDD-AGRHYFKECYIEGSIDF 218 (359)
T ss_pred EEECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccce-----eeeC-CCCEEEEeeEEcccccE
Confidence 3456788888888888631 11211 2355566677777664332 2111 12455666666654333
Q ss_pred EEEeCCceeEEEEeeEEc
Q 013309 254 ISIVGNSSLIRIRNFACG 271 (445)
Q Consensus 254 i~i~~~~~ni~I~n~~~~ 271 (445)
| -|.....++||++.
T Consensus 219 I---FG~g~a~Fe~C~I~ 233 (359)
T PLN02634 219 I---FGNGRSMYKDCELH 233 (359)
T ss_pred E---cCCceEEEeccEEE
Confidence 2 12345566666654
No 121
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=40.35 E-value=25 Score=30.53 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=8.4
Q ss_pred EcCCcEEEeeeee
Q 013309 92 FSAGYTFLIHPID 104 (445)
Q Consensus 92 ~P~G~~Yl~~~l~ 104 (445)
||+- .|.+.++.
T Consensus 89 fp~~-~YQTTTIi 100 (184)
T COG3054 89 FPHD-RYQTTTII 100 (184)
T ss_pred CChH-HceeeEEe
Confidence 7887 78776553
No 122
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=40.35 E-value=3.6e+02 Score=28.90 Aligned_cols=78 Identities=17% Similarity=0.121 Sum_probs=36.4
Q ss_pred EEeecceEEeceEEEcCCC----ceeEEE-ceecEEEEeEEEECCCCCCCCCceeeeceecEEEEeeEEecCCccEEEeC
Q 013309 184 FHKCKNLKVQNLRVVNSQQ----MHIAFT-NCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVG 258 (445)
Q Consensus 184 ~~~~~nv~I~~v~i~ns~~----~~i~~~-~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~~ 258 (445)
....+++..+|++|+|... ..+-+. .++.+.+.+|.|.+..|. +.... ..-..++|.|...=|-| -
T Consensus 326 ~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDT-----Ly~~~-~rq~y~~C~I~GtVDFI---F 396 (553)
T PLN02708 326 GVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDT-----LYAHS-LRQFYKSCRIQGNVDFI---F 396 (553)
T ss_pred EEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeecccc-----ceeCC-CceEEEeeEEeecCCEE---e
Confidence 3456677777777777532 122222 345555566666553322 22221 12344555555433322 1
Q ss_pred CceeEEEEeeEE
Q 013309 259 NSSLIRIRNFAC 270 (445)
Q Consensus 259 ~~~ni~I~n~~~ 270 (445)
|...++++||.+
T Consensus 397 G~a~avfq~c~i 408 (553)
T PLN02708 397 GNSAAVFQDCAI 408 (553)
T ss_pred cCceEEEEccEE
Confidence 223555555554
No 123
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=39.45 E-value=1e+02 Score=25.51 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=43.1
Q ss_pred EeecceEEeceEEEcC---CCceeEEEceecEEEEeEEEECCCCCCCCCceeeeceecEEEEe-eEEecCCccEE
Q 013309 185 HKCKNLKVQNLRVVNS---QQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKN-SIVGTGDDCIS 255 (445)
Q Consensus 185 ~~~~nv~I~~v~i~ns---~~~~i~~~~~~nv~I~n~~I~~~~~~~n~DGi~~~~s~nv~I~n-~~i~~gdD~i~ 255 (445)
..+.+..|.+-.+.+. ..+++.+..+.+..+.+..+. .. .. .+|++++.+.+..+.+ ..+....|++.
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~ 144 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGIA 144 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcEe
Confidence 5566777777766665 377888877666555555554 11 12 7888888877777777 44444555543
No 124
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=39.17 E-value=5e+02 Score=27.65 Aligned_cols=113 Identities=9% Similarity=0.055 Sum_probs=77.0
Q ss_pred EEceecEEEEeEEEECCCCCCCCCceeee-ceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcC
Q 013309 207 FTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSN 285 (445)
Q Consensus 207 ~~~~~nv~I~n~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~ 285 (445)
....+++..+|++|.+.........+.+. .++...+.+|.|...-|.+..+++ .-.+++|++.+.-.+=+|.
T Consensus 301 ~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~--Rqyy~~C~IeGtVDFIFG~----- 373 (530)
T PLN02933 301 GVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSA--KQFYRECDIYGTIDFIFGN----- 373 (530)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCC--ceEEEeeEEecccceeccC-----
Confidence 34567888999999985432234445544 268899999999998888776653 3499999999887777776
Q ss_pred CCccEEeEEEEcEEEeCCc----ceEEEEEecCC--CceeeeEEEEeEEEecC
Q 013309 286 SSVRIHDIMVYGALISNTQ----NGVRIKTWQGG--SGSATNIQFLDVLMKNV 332 (445)
Q Consensus 286 ~~~~v~nv~i~n~~~~~~~----~gi~i~~~~g~--~g~v~ni~~~ni~~~~~ 332 (445)
....|+||.+.-.. ..-.| +.+++ ...-..+.|.|+++...
T Consensus 374 -----a~avFq~C~i~~~~~~~~~~~~i-TAq~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 374 -----AAVVFQNCSLYARKPNPNHKIAF-TAQSRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred -----ceEEEeccEEEEeccCCCCceEE-EecCCCCCCCCceEEEEeeEEecC
Confidence 26778888885321 11123 33332 12345788999999764
No 125
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=34.13 E-value=2.8e+02 Score=29.72 Aligned_cols=113 Identities=10% Similarity=0.048 Sum_probs=78.0
Q ss_pred EEceecEEEEeEEEECCCCCCCCCceeee-ceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcC
Q 013309 207 FTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSN 285 (445)
Q Consensus 207 ~~~~~nv~I~n~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~ 285 (445)
....+++..+|++|.+.........+.+. .++...+.+|.|....|.+..++ ..-.++||.+.+.-.+=+|.
T Consensus 319 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~----- 391 (548)
T PLN02301 319 AAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHS--LRQFYRDSYITGTVDFIFGN----- 391 (548)
T ss_pred EEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecC--CcEEEEeeEEEeccceeccc-----
Confidence 34567889999999985432233444443 36889999999999888887765 33599999999887777776
Q ss_pred CCccEEeEEEEcEEEeCCcc--e--EEEEEecCC--CceeeeEEEEeEEEecC
Q 013309 286 SSVRIHDIMVYGALISNTQN--G--VRIKTWQGG--SGSATNIQFLDVLMKNV 332 (445)
Q Consensus 286 ~~~~v~nv~i~n~~~~~~~~--g--i~i~~~~g~--~g~v~ni~~~ni~~~~~ 332 (445)
-...|+||++.-... + -.| +.+++ ...-..+.|.|+++...
T Consensus 392 -----a~avfq~c~i~~~~~~~~~~~~i-TAqgr~~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 392 -----AAVVFQNCKIVARKPMAGQKNMV-TAQGRTDPNQNTGISIQKCDIIAS 438 (548)
T ss_pred -----ceeEEeccEEEEecCCCCCCceE-EecCCCCCCCCCEEEEEeeEEecC
Confidence 377899999854321 1 122 33332 23446889999999864
No 126
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=34.07 E-value=94 Score=30.65 Aligned_cols=14 Identities=29% Similarity=0.555 Sum_probs=7.5
Q ss_pred ecceEEeceEEEcC
Q 013309 187 CKNLKVQNLRVVNS 200 (445)
Q Consensus 187 ~~nv~I~~v~i~ns 200 (445)
-.++..++++++|.
T Consensus 188 ~ndf~~~nlT~en~ 201 (405)
T COG4677 188 NNDFQLQNLTIENT 201 (405)
T ss_pred cCCcccccceeecc
Confidence 34555555555554
No 127
>PRK15221 Saf-pilin pilus formation protein SafA; Provisional
Probab=32.79 E-value=1.8e+02 Score=25.59 Aligned_cols=13 Identities=31% Similarity=0.759 Sum_probs=10.0
Q ss_pred ceEEecCCchhhc
Q 013309 152 GGTINGMGQEWWS 164 (445)
Q Consensus 152 ~G~IDG~G~~~w~ 164 (445)
+|.++++|..||.
T Consensus 120 ~~~~~~ng~~W~~ 132 (165)
T PRK15221 120 KGNVNWNGHKWIT 132 (165)
T ss_pred CCcccCCCCceEE
Confidence 3678888888886
No 128
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=32.13 E-value=6.8e+02 Score=27.02 Aligned_cols=110 Identities=13% Similarity=0.123 Sum_probs=58.0
Q ss_pred eecEEEEeEEEECCCCCCCCCceeee-ceecEEEEeeEEecCCccEEEeCCceeEEEEeeEEcCCceEEEeecCCcCCCc
Q 013309 210 CLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSV 288 (445)
Q Consensus 210 ~~nv~I~n~~I~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~~~~~ni~I~n~~~~~~~gi~igs~g~~~~~~ 288 (445)
.+++..+|++|.+.........+.+. .++...+.+|.|....|.+..++ ..-.+++|.+.+.-.+-+|.
T Consensus 346 ~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~-------- 415 (572)
T PLN02990 346 GDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS--HRQFFRDCTVSGTVDFIFGD-------- 415 (572)
T ss_pred cCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC--CcEEEEeeEEecccceEccC--------
Confidence 45566667777664322223333333 24566777777776666655544 23456777776665555554
Q ss_pred cEEeEEEEcEEEeCCc--ce--EEEEEecCCC--ceeeeEEEEeEEEecC
Q 013309 289 RIHDIMVYGALISNTQ--NG--VRIKTWQGGS--GSATNIQFLDVLMKNV 332 (445)
Q Consensus 289 ~v~nv~i~n~~~~~~~--~g--i~i~~~~g~~--g~v~ni~~~ni~~~~~ 332 (445)
....|+||++.-.. .| -.| +.+++. ..-..+.|.|+++...
T Consensus 416 --a~avf~~C~i~~~~~~~~~~~~i-TAq~r~~~~~~~G~vf~~C~it~~ 462 (572)
T PLN02990 416 --AKVVLQNCNIVVRKPMKGQSCMI-TAQGRSDVRESTGLVLQNCHITGE 462 (572)
T ss_pred --ceEEEEccEEEEecCCCCCceEE-EeCCCCCCCCCceEEEEeeEEecC
Confidence 25667777764321 11 112 223321 2234667777777653
No 129
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=28.35 E-value=95 Score=31.81 Aligned_cols=28 Identities=11% Similarity=0.350 Sum_probs=15.9
Q ss_pred ceeeeceecEEEEeeEEecCCccEEEeC
Q 013309 231 GIHISASRGVEVKNSIVGTGDDCISIVG 258 (445)
Q Consensus 231 Gi~~~~s~nv~I~n~~i~~gdD~i~i~~ 258 (445)
|+.+-...|-.|+.+.|..++.++-+..
T Consensus 420 gvqirtGsNP~i~~NkIWggqNGvLVyn 447 (625)
T KOG1777|consen 420 GVQIRTGSNPKIRRNKIWGGQNGVLVYN 447 (625)
T ss_pred ceEeecCCCCeeeecceecCcccEEEEc
Confidence 4555444566666666666666654443
No 130
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=27.31 E-value=3.5e+02 Score=22.12 Aligned_cols=13 Identities=8% Similarity=0.388 Sum_probs=8.6
Q ss_pred ecceEEeceEEEc
Q 013309 187 CKNLKVQNLRVVN 199 (445)
Q Consensus 187 ~~nv~I~~v~i~n 199 (445)
..+++++|+++.+
T Consensus 44 ~~~~~~~G~~~~~ 56 (146)
T smart00722 44 SNDVRVDGITIGG 56 (146)
T ss_pred CCCCEEECeEEEe
Confidence 4556777777766
Done!