Query 013310
Match_columns 445
No_of_seqs 317 out of 2445
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:33:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013310.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013310hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4536 CorB Putative Mg2+ and 100.0 1.5E-66 3.2E-71 500.6 19.7 369 34-415 2-390 (423)
2 TIGR03520 GldE gliding motilit 100.0 2.4E-63 5.1E-68 508.6 32.4 356 43-412 2-379 (408)
3 PRK11573 hypothetical protein; 100.0 1.7E-63 3.6E-68 509.7 29.8 353 46-412 2-375 (413)
4 COG1253 TlyC Hemolysins and re 100.0 1.3E-57 2.8E-62 470.0 32.2 362 38-411 6-392 (429)
5 PRK15094 magnesium/cobalt effl 100.0 1.1E-33 2.3E-38 277.5 14.3 226 177-412 24-253 (292)
6 COG4535 CorC Putative Mg2+ and 100.0 4E-33 8.7E-38 253.6 5.9 230 172-411 19-252 (293)
7 KOG2118 Predicted membrane pro 100.0 9.4E-30 2E-34 264.3 6.4 314 27-345 4-324 (498)
8 PF01595 DUF21: Domain of unkn 100.0 6.3E-27 1.4E-31 214.7 20.9 167 39-213 3-183 (183)
9 COG3448 CBS-domain-containing 99.7 8.1E-16 1.8E-20 145.0 19.7 136 186-329 202-353 (382)
10 COG2524 Predicted transcriptio 99.7 8.3E-17 1.8E-21 149.2 8.5 107 218-329 164-272 (294)
11 TIGR00400 mgtE Mg2+ transporte 99.7 5.1E-16 1.1E-20 161.6 14.9 134 186-329 89-233 (449)
12 TIGR01302 IMP_dehydrog inosine 99.6 7.8E-15 1.7E-19 152.6 14.6 150 185-349 43-200 (450)
13 TIGR03520 GldE gliding motilit 99.6 5.8E-15 1.3E-19 151.7 11.8 130 289-439 189-321 (408)
14 COG4109 Predicted transcriptio 99.6 1.2E-14 2.6E-19 140.3 10.7 105 221-329 183-287 (432)
15 COG1253 TlyC Hemolysins and re 99.5 8E-14 1.7E-18 144.4 13.5 130 290-438 205-337 (429)
16 PRK11573 hypothetical protein; 99.5 7.5E-14 1.6E-18 143.6 11.7 133 290-439 186-321 (413)
17 PRK05567 inosine 5'-monophosph 99.5 6.3E-13 1.4E-17 139.8 15.0 150 185-350 50-205 (486)
18 cd04603 CBS_pair_KefB_assoc Th 99.5 6.7E-13 1.5E-17 111.0 11.7 91 237-329 2-94 (111)
19 PRK10892 D-arabinose 5-phospha 99.4 3.9E-13 8.4E-18 134.6 10.6 104 224-329 200-307 (326)
20 cd04618 CBS_pair_5 The CBS dom 99.4 1E-12 2.3E-17 107.9 10.9 80 237-330 2-81 (98)
21 cd04641 CBS_pair_28 The CBS do 99.4 1.6E-12 3.4E-17 110.2 11.4 91 237-329 2-103 (120)
22 cd04605 CBS_pair_MET2_assoc Th 99.4 1.7E-12 3.7E-17 107.8 10.8 91 237-329 3-93 (110)
23 COG3620 Predicted transcriptio 99.4 7.9E-13 1.7E-17 114.4 8.0 99 224-329 63-166 (187)
24 cd04619 CBS_pair_6 The CBS dom 99.4 2.8E-12 6E-17 107.8 10.8 90 238-329 3-97 (114)
25 cd04630 CBS_pair_17 The CBS do 99.4 3.6E-12 7.8E-17 106.9 11.0 92 237-329 2-98 (114)
26 PRK11543 gutQ D-arabinose 5-ph 99.4 1.3E-12 2.8E-17 130.5 9.7 103 225-329 196-301 (321)
27 cd04623 CBS_pair_10 The CBS do 99.4 3.9E-12 8.4E-17 105.8 10.8 91 237-329 2-97 (113)
28 cd04600 CBS_pair_HPP_assoc Thi 99.4 3.8E-12 8.3E-17 108.0 10.9 91 237-329 3-107 (124)
29 cd04626 CBS_pair_13 The CBS do 99.4 2.8E-12 6.1E-17 106.8 9.9 91 237-329 2-95 (111)
30 COG4536 CorB Putative Mg2+ and 99.4 1.1E-12 2.4E-17 128.1 8.0 166 250-441 168-336 (423)
31 cd04596 CBS_pair_DRTGG_assoc T 99.4 4.3E-12 9.3E-17 105.3 10.5 89 237-329 3-91 (108)
32 cd04590 CBS_pair_CorC_HlyC_ass 99.4 3.6E-12 7.8E-17 106.0 10.0 91 237-329 2-94 (111)
33 cd04642 CBS_pair_29 The CBS do 99.3 6.5E-12 1.4E-16 107.4 10.9 91 237-329 2-109 (126)
34 cd04593 CBS_pair_EriC_assoc_ba 99.3 6E-12 1.3E-16 105.6 10.4 90 238-329 3-96 (115)
35 cd04624 CBS_pair_11 The CBS do 99.3 7.1E-12 1.5E-16 104.4 10.4 91 237-329 2-95 (112)
36 cd04631 CBS_pair_18 The CBS do 99.3 5.6E-12 1.2E-16 107.2 9.8 92 237-329 2-108 (125)
37 PRK07807 inosine 5-monophospha 99.3 6.3E-12 1.4E-16 131.0 12.1 118 224-349 87-204 (479)
38 cd04639 CBS_pair_26 The CBS do 99.3 6E-12 1.3E-16 104.6 9.7 91 237-329 2-94 (111)
39 PRK01862 putative voltage-gate 99.3 4.5E-12 9.8E-17 136.3 10.9 103 223-329 444-550 (574)
40 cd04627 CBS_pair_14 The CBS do 99.3 8E-12 1.7E-16 106.3 10.1 92 237-329 2-106 (123)
41 cd04643 CBS_pair_30 The CBS do 99.3 1.1E-11 2.3E-16 103.9 10.2 89 237-329 2-99 (116)
42 cd04582 CBS_pair_ABC_OpuCA_ass 99.3 1.6E-11 3.6E-16 101.1 11.1 88 237-329 2-89 (106)
43 cd04617 CBS_pair_4 The CBS dom 99.3 9E-12 2E-16 105.3 9.7 92 237-330 2-99 (118)
44 cd04621 CBS_pair_8 The CBS dom 99.3 1.1E-11 2.3E-16 107.9 10.3 91 237-329 2-119 (135)
45 COG2239 MgtE Mg/Co/Ni transpor 99.3 1.9E-11 4.1E-16 125.7 13.6 116 208-329 114-234 (451)
46 cd04803 CBS_pair_15 The CBS do 99.3 1.4E-11 2.9E-16 104.3 10.5 91 237-329 2-105 (122)
47 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 1.7E-11 3.7E-16 101.6 10.9 90 237-329 2-94 (111)
48 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 1.8E-11 3.8E-16 101.2 10.9 90 237-329 3-92 (109)
49 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 1.2E-11 2.6E-16 103.0 9.9 91 237-329 2-96 (114)
50 cd04801 CBS_pair_M50_like This 99.3 6.3E-12 1.4E-16 105.2 7.8 107 237-347 2-113 (114)
51 cd04608 CBS_pair_PALP_assoc Th 99.3 7.1E-12 1.5E-16 107.4 8.0 81 237-319 3-87 (124)
52 cd04636 CBS_pair_23 The CBS do 99.3 1.5E-11 3.1E-16 106.1 9.9 91 237-329 2-116 (132)
53 cd04588 CBS_pair_CAP-ED_DUF294 99.3 2.2E-11 4.7E-16 101.1 10.6 90 237-329 2-93 (110)
54 cd04607 CBS_pair_NTP_transfera 99.3 2.3E-11 4.9E-16 101.7 10.7 90 238-329 4-96 (113)
55 cd04635 CBS_pair_22 The CBS do 99.3 1.8E-11 4E-16 103.5 10.1 91 237-329 2-105 (122)
56 COG4535 CorC Putative Mg2+ and 99.3 2.1E-13 4.5E-18 125.2 -2.3 163 250-441 36-201 (293)
57 cd04614 CBS_pair_1 The CBS dom 99.3 3.2E-11 6.9E-16 98.5 10.9 78 237-329 2-79 (96)
58 cd04601 CBS_pair_IMPDH This cd 99.3 2.7E-11 5.9E-16 100.3 10.7 90 237-329 3-93 (110)
59 cd04640 CBS_pair_27 The CBS do 99.3 1.8E-11 4E-16 104.7 9.8 91 237-329 2-108 (126)
60 cd04599 CBS_pair_GGDEF_assoc2 99.3 2.9E-11 6.4E-16 99.3 10.4 88 237-329 2-89 (105)
61 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 2.9E-11 6.4E-16 100.2 10.5 90 237-329 2-94 (111)
62 PRK07107 inosine 5-monophospha 99.3 1.6E-11 3.4E-16 128.8 10.9 108 239-349 108-219 (502)
63 cd04610 CBS_pair_ParBc_assoc T 99.3 4.5E-11 9.9E-16 98.5 11.1 88 237-329 3-90 (107)
64 cd04585 CBS_pair_ACT_assoc2 Th 99.3 3.4E-11 7.4E-16 101.4 10.6 90 237-329 2-105 (122)
65 cd04589 CBS_pair_CAP-ED_DUF294 99.3 3.6E-11 7.8E-16 100.0 10.4 90 237-329 2-95 (111)
66 cd04615 CBS_pair_2 The CBS dom 99.3 3.6E-11 7.7E-16 100.3 10.4 90 238-329 3-96 (113)
67 cd04594 CBS_pair_EriC_assoc_ar 99.3 4.6E-11 1E-15 98.5 11.0 84 240-329 5-88 (104)
68 cd04595 CBS_pair_DHH_polyA_Pol 99.3 3.3E-11 7.2E-16 100.1 10.1 90 237-329 3-94 (110)
69 cd04800 CBS_pair_CAP-ED_DUF294 99.3 3.7E-11 7.9E-16 99.9 10.2 90 237-329 2-95 (111)
70 cd04629 CBS_pair_16 The CBS do 99.3 1.9E-11 4.2E-16 102.0 8.4 91 237-329 2-98 (114)
71 cd04632 CBS_pair_19 The CBS do 99.3 3.6E-11 7.7E-16 102.9 10.2 91 237-329 2-109 (128)
72 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 3.6E-11 7.9E-16 100.2 9.8 91 237-329 3-97 (114)
73 cd04586 CBS_pair_BON_assoc Thi 99.2 2.5E-11 5.3E-16 105.1 9.0 91 237-329 3-119 (135)
74 cd04606 CBS_pair_Mg_transporte 99.2 4.4E-11 9.6E-16 99.3 10.2 85 241-329 2-91 (109)
75 cd04620 CBS_pair_7 The CBS dom 99.2 4.1E-11 9E-16 100.3 10.0 90 237-329 2-98 (115)
76 PLN02274 inosine-5'-monophosph 99.2 6.9E-11 1.5E-15 124.2 13.8 127 213-350 92-222 (505)
77 cd04587 CBS_pair_CAP-ED_DUF294 99.2 4.2E-11 9.2E-16 99.7 9.7 90 237-329 2-96 (113)
78 cd04602 CBS_pair_IMPDH_2 This 99.2 4.9E-11 1.1E-15 100.0 10.1 91 237-329 3-97 (114)
79 PTZ00314 inosine-5'-monophosph 99.2 6E-11 1.3E-15 124.6 12.8 118 227-350 97-218 (495)
80 cd04591 CBS_pair_EriC_assoc_eu 99.2 3.7E-11 8E-16 99.8 8.8 86 236-329 2-89 (105)
81 cd04637 CBS_pair_24 The CBS do 99.2 3.8E-11 8.1E-16 101.7 8.7 90 237-329 2-105 (122)
82 TIGR01137 cysta_beta cystathio 99.2 4.1E-11 9E-16 125.3 10.5 101 223-329 332-436 (454)
83 cd04622 CBS_pair_9 The CBS dom 99.2 1.3E-10 2.9E-15 96.7 11.3 90 237-329 2-96 (113)
84 cd04638 CBS_pair_25 The CBS do 99.2 1.6E-10 3.5E-15 95.3 11.3 89 237-329 2-90 (106)
85 PRK15094 magnesium/cobalt effl 99.2 5.3E-12 1.1E-16 124.2 2.7 132 289-439 65-199 (292)
86 TIGR01303 IMP_DH_rel_1 IMP deh 99.2 1E-10 2.2E-15 121.9 12.1 117 225-350 87-203 (475)
87 cd04625 CBS_pair_12 The CBS do 99.2 9.6E-11 2.1E-15 97.5 9.6 90 237-329 2-96 (112)
88 cd04802 CBS_pair_3 The CBS dom 99.2 1.5E-10 3.3E-15 96.3 10.5 90 237-329 2-96 (112)
89 cd04584 CBS_pair_ACT_assoc Thi 99.2 1.2E-10 2.5E-15 98.3 9.5 91 237-329 2-105 (121)
90 cd04633 CBS_pair_20 The CBS do 99.2 1.1E-10 2.5E-15 98.5 9.3 90 237-329 2-105 (121)
91 cd04609 CBS_pair_PALP_assoc2 T 99.2 1.5E-10 3.2E-15 95.7 9.4 88 237-329 2-93 (110)
92 TIGR00393 kpsF KpsF/GutQ famil 99.2 5.7E-11 1.2E-15 115.5 7.5 110 226-338 155-267 (268)
93 COG0517 FOG: CBS domain [Gener 99.1 3.9E-10 8.5E-15 94.3 10.5 95 230-329 3-101 (117)
94 cd02205 CBS_pair The CBS domai 99.1 4.3E-10 9.3E-15 92.3 10.5 91 237-329 2-96 (113)
95 cd04634 CBS_pair_21 The CBS do 99.1 2.8E-10 6E-15 99.8 9.4 90 237-329 2-127 (143)
96 cd04598 CBS_pair_GGDEF_assoc T 99.1 3.4E-10 7.4E-15 95.2 9.0 90 237-329 2-102 (119)
97 COG2905 Predicted signal-trans 99.1 2E-10 4.4E-15 117.7 6.9 103 223-329 146-252 (610)
98 cd04592 CBS_pair_EriC_assoc_eu 99.0 1.8E-09 3.9E-14 93.9 8.0 94 237-332 2-119 (133)
99 PRK14869 putative manganese-de 98.8 8.9E-09 1.9E-13 110.3 9.4 118 225-348 67-302 (546)
100 PF00571 CBS: CBS domain CBS d 98.7 2.4E-08 5.3E-13 73.1 5.6 37 293-329 1-37 (57)
101 PF00571 CBS: CBS domain CBS d 98.5 1E-07 2.3E-12 69.7 4.4 54 228-285 1-54 (57)
102 KOG1764 5'-AMP-activated prote 98.4 1E-06 2.2E-11 89.7 10.3 91 237-329 238-340 (381)
103 PRK10070 glycine betaine trans 98.4 2.7E-06 5.8E-11 87.4 12.7 100 226-329 274-374 (400)
104 cd04801 CBS_pair_M50_like This 98.3 2.9E-07 6.2E-12 76.8 1.7 111 300-425 2-113 (114)
105 TIGR01186 proV glycine betaine 98.3 9.4E-06 2E-10 82.4 12.8 86 240-329 254-339 (363)
106 KOG0474 Cl- channel CLC-7 and 98.2 2E-06 4.3E-11 89.5 5.0 105 223-330 579-729 (762)
107 KOG2550 IMP dehydrogenase/GMP 98.1 5E-06 1.1E-10 82.6 6.6 128 210-348 97-226 (503)
108 TIGR00400 mgtE Mg2+ transporte 97.8 8.2E-06 1.8E-10 85.4 2.4 100 224-329 193-292 (449)
109 cd04603 CBS_pair_KefB_assoc Th 97.7 5.7E-05 1.2E-09 62.7 5.6 55 226-284 56-110 (111)
110 PRK14869 putative manganese-de 97.7 1.8E-05 4E-10 84.9 3.1 118 224-347 244-390 (546)
111 TIGR00393 kpsF KpsF/GutQ famil 97.6 2.6E-05 5.7E-10 75.7 2.2 113 291-419 155-268 (268)
112 COG2524 Predicted transcriptio 97.6 8.3E-05 1.8E-09 70.1 5.2 40 290-329 171-210 (294)
113 cd04597 CBS_pair_DRTGG_assoc2 97.6 0.00013 2.9E-09 61.1 6.1 55 226-284 58-112 (113)
114 cd04604 CBS_pair_KpsF_GutQ_ass 97.6 0.00015 3.2E-09 59.9 6.2 59 222-284 55-113 (114)
115 cd04617 CBS_pair_4 The CBS dom 97.6 0.00012 2.6E-09 61.3 5.4 60 224-284 56-117 (118)
116 PRK07107 inosine 5-monophospha 97.6 0.00023 5.1E-09 75.1 8.5 102 223-328 158-261 (502)
117 cd04597 CBS_pair_DRTGG_assoc2 97.5 0.00015 3.3E-09 60.8 5.5 39 291-329 58-96 (113)
118 cd04619 CBS_pair_6 The CBS dom 97.5 0.00017 3.6E-09 60.1 5.2 56 225-284 58-113 (114)
119 COG3448 CBS-domain-containing 97.4 0.00012 2.6E-09 70.2 3.9 59 290-350 244-302 (382)
120 cd04618 CBS_pair_5 The CBS dom 97.4 0.00028 6E-09 57.6 5.4 46 238-284 52-97 (98)
121 PRK05567 inosine 5'-monophosph 97.4 0.00048 1E-08 72.8 8.5 109 225-338 146-257 (486)
122 PRK07807 inosine 5-monophospha 97.3 0.00051 1.1E-08 72.2 7.5 95 226-329 148-246 (479)
123 cd04607 CBS_pair_NTP_transfera 97.3 0.00044 9.6E-09 57.2 5.5 55 226-284 58-112 (113)
124 cd04585 CBS_pair_ACT_assoc2 Th 97.3 0.00039 8.4E-09 57.9 5.1 58 223-284 64-121 (122)
125 cd04620 CBS_pair_7 The CBS dom 97.3 0.00056 1.2E-08 56.7 5.9 56 225-284 57-114 (115)
126 cd04600 CBS_pair_HPP_assoc Thi 97.3 0.00045 9.8E-09 58.0 5.3 58 223-284 66-123 (124)
127 cd04640 CBS_pair_27 The CBS do 97.2 0.00034 7.5E-09 59.3 4.1 60 224-284 62-125 (126)
128 cd04625 CBS_pair_12 The CBS do 97.2 0.00052 1.1E-08 56.5 5.1 55 225-284 57-111 (112)
129 cd04596 CBS_pair_DRTGG_assoc T 97.2 0.00056 1.2E-08 56.1 5.2 56 225-284 52-107 (108)
130 cd04610 CBS_pair_ParBc_assoc T 97.2 0.00059 1.3E-08 55.6 5.2 56 225-284 51-106 (107)
131 COG3620 Predicted transcriptio 97.2 0.00036 7.8E-09 61.2 3.8 46 292-338 66-111 (187)
132 TIGR01303 IMP_DH_rel_1 IMP deh 97.2 0.0012 2.5E-08 69.4 8.3 96 226-327 146-243 (475)
133 cd04627 CBS_pair_14 The CBS do 97.2 0.00073 1.6E-08 56.9 5.6 52 228-283 70-121 (123)
134 smart00116 CBS Domain in cysta 97.2 0.001 2.2E-08 45.2 5.3 29 301-329 2-30 (49)
135 cd04630 CBS_pair_17 The CBS do 97.2 0.00069 1.5E-08 56.2 5.3 56 224-284 58-113 (114)
136 cd04623 CBS_pair_10 The CBS do 97.2 0.0007 1.5E-08 55.6 5.3 55 225-284 58-112 (113)
137 PLN02274 inosine-5'-monophosph 97.1 0.0011 2.3E-08 70.3 7.6 102 224-327 161-266 (505)
138 cd04582 CBS_pair_ABC_OpuCA_ass 97.1 0.0011 2.4E-08 54.0 6.1 54 227-284 52-105 (106)
139 cd04615 CBS_pair_2 The CBS dom 97.1 0.00082 1.8E-08 55.4 5.4 57 224-284 56-112 (113)
140 PRK10892 D-arabinose 5-phospha 97.1 0.00084 1.8E-08 67.2 6.5 58 223-285 266-323 (326)
141 cd04622 CBS_pair_9 The CBS dom 97.1 0.00089 1.9E-08 55.1 5.5 55 226-284 58-112 (113)
142 cd04621 CBS_pair_8 The CBS dom 97.1 0.00083 1.8E-08 58.1 5.4 56 224-284 79-134 (135)
143 KOG0475 Cl- channel CLC-3 and 97.1 0.0026 5.6E-08 67.0 9.8 101 228-329 545-677 (696)
144 cd04614 CBS_pair_1 The CBS dom 97.1 0.0014 3E-08 53.0 6.2 46 299-346 1-46 (96)
145 cd04631 CBS_pair_18 The CBS do 97.1 0.00083 1.8E-08 56.5 5.0 57 224-284 68-124 (125)
146 cd04593 CBS_pair_EriC_assoc_ba 97.1 0.0011 2.4E-08 54.9 5.7 55 227-284 59-114 (115)
147 PRK11543 gutQ D-arabinose 5-ph 97.1 0.001 2.3E-08 66.3 6.3 57 225-285 262-318 (321)
148 PTZ00314 inosine-5'-monophosph 97.1 0.0022 4.8E-08 67.8 8.9 106 224-333 157-265 (495)
149 cd04606 CBS_pair_Mg_transporte 97.0 0.0011 2.3E-08 54.5 5.3 57 225-285 52-108 (109)
150 cd04613 CBS_pair_SpoIVFB_EriC_ 97.0 0.0014 3.1E-08 53.8 6.0 57 225-284 57-113 (114)
151 cd04592 CBS_pair_EriC_assoc_eu 97.0 0.0018 3.8E-08 56.1 6.7 30 300-329 2-31 (133)
152 cd04636 CBS_pair_23 The CBS do 97.0 0.001 2.2E-08 56.8 5.1 55 225-284 77-131 (132)
153 cd04602 CBS_pair_IMPDH_2 This 97.0 0.00096 2.1E-08 55.4 4.8 57 226-284 57-113 (114)
154 cd04587 CBS_pair_CAP-ED_DUF294 97.0 0.00097 2.1E-08 54.9 4.8 55 226-284 58-112 (113)
155 cd04589 CBS_pair_CAP-ED_DUF294 97.0 0.0012 2.7E-08 54.2 5.3 56 224-284 55-110 (111)
156 COG0517 FOG: CBS domain [Gener 97.0 0.0022 4.7E-08 53.1 6.7 54 227-283 63-117 (117)
157 cd04594 CBS_pair_EriC_assoc_ar 97.0 0.0015 3.3E-08 53.3 5.7 54 226-284 50-103 (104)
158 cd04601 CBS_pair_IMPDH This cd 97.0 0.0013 2.9E-08 53.7 5.3 56 225-284 53-109 (110)
159 cd04626 CBS_pair_13 The CBS do 97.0 0.0013 2.9E-08 54.0 5.3 55 225-284 56-110 (111)
160 cd04641 CBS_pair_28 The CBS do 97.0 0.0019 4.2E-08 54.0 6.4 46 300-347 2-47 (120)
161 cd04586 CBS_pair_BON_assoc Thi 97.0 0.00083 1.8E-08 57.6 4.2 57 223-284 78-134 (135)
162 cd04635 CBS_pair_22 The CBS do 97.0 0.0012 2.6E-08 55.2 5.1 57 224-284 65-121 (122)
163 KOG1764 5'-AMP-activated prote 97.0 0.003 6.5E-08 64.6 8.8 115 233-350 159-286 (381)
164 cd04633 CBS_pair_20 The CBS do 97.0 0.0009 2E-08 55.9 4.3 57 223-284 64-120 (121)
165 cd04595 CBS_pair_DHH_polyA_Pol 97.0 0.0016 3.4E-08 53.5 5.6 56 224-284 54-109 (110)
166 cd04583 CBS_pair_ABC_OpuCA_ass 97.0 0.0015 3.2E-08 53.3 5.4 55 226-284 54-108 (109)
167 cd04612 CBS_pair_SpoIVFB_EriC_ 97.0 0.0018 3.8E-08 53.1 5.8 55 226-284 56-110 (111)
168 cd04803 CBS_pair_15 The CBS do 97.0 0.0015 3.3E-08 54.6 5.5 57 224-284 65-121 (122)
169 cd04611 CBS_pair_PAS_GGDEF_DUF 96.9 0.0016 3.5E-08 53.3 5.5 57 224-284 54-110 (111)
170 cd04584 CBS_pair_ACT_assoc Thi 96.9 0.0014 3.1E-08 54.6 5.0 57 223-284 64-120 (121)
171 cd04629 CBS_pair_16 The CBS do 96.9 0.0012 2.7E-08 54.4 4.5 55 225-284 59-113 (114)
172 cd04639 CBS_pair_26 The CBS do 96.9 0.0016 3.5E-08 53.4 5.0 55 226-284 56-110 (111)
173 cd04599 CBS_pair_GGDEF_assoc2 96.9 0.0018 3.8E-08 52.5 5.1 55 225-284 50-104 (105)
174 cd04802 CBS_pair_3 The CBS dom 96.9 0.0018 3.8E-08 53.3 5.1 56 224-284 56-111 (112)
175 smart00116 CBS Domain in cysta 96.9 0.0019 4E-08 43.8 4.4 46 238-285 2-47 (49)
176 cd04800 CBS_pair_CAP-ED_DUF294 96.8 0.002 4.4E-08 52.8 4.9 55 225-284 56-110 (111)
177 cd04624 CBS_pair_11 The CBS do 96.8 0.0036 7.9E-08 51.4 6.4 55 226-284 57-111 (112)
178 cd04632 CBS_pair_19 The CBS do 96.8 0.002 4.4E-08 54.5 4.9 58 224-284 69-127 (128)
179 cd04608 CBS_pair_PALP_assoc Th 96.8 0.0047 1E-07 52.4 7.1 40 299-338 2-41 (124)
180 cd04637 CBS_pair_24 The CBS do 96.7 0.0021 4.6E-08 53.8 4.8 55 226-284 67-121 (122)
181 cd04590 CBS_pair_CorC_HlyC_ass 96.7 0.0026 5.6E-08 52.2 5.1 53 227-284 58-110 (111)
182 cd04643 CBS_pair_30 The CBS do 96.7 0.0047 1E-07 51.0 6.4 48 300-349 2-49 (116)
183 cd04605 CBS_pair_MET2_assoc Th 96.7 0.005 1.1E-07 50.4 6.3 54 227-284 56-109 (110)
184 cd04642 CBS_pair_29 The CBS do 96.6 0.0043 9.3E-08 52.5 5.8 51 230-284 75-125 (126)
185 cd04588 CBS_pair_CAP-ED_DUF294 96.6 0.0042 9E-08 50.8 5.3 55 226-284 55-109 (110)
186 TIGR03415 ABC_choXWV_ATP choli 96.6 0.0068 1.5E-07 62.1 7.9 99 215-329 263-362 (382)
187 COG4175 ProV ABC-type proline/ 96.5 0.0073 1.6E-07 59.3 7.3 103 213-329 261-364 (386)
188 cd04591 CBS_pair_EriC_assoc_eu 96.5 0.005 1.1E-07 50.6 5.3 49 231-284 56-104 (105)
189 PRK01862 putative voltage-gate 96.5 0.0037 8.1E-08 67.6 5.7 59 225-286 511-570 (574)
190 TIGR01137 cysta_beta cystathio 96.5 0.0053 1.2E-07 64.3 6.6 55 291-347 335-389 (454)
191 cd04634 CBS_pair_21 The CBS do 96.3 0.0064 1.4E-07 52.9 4.9 56 224-284 87-142 (143)
192 COG2905 Predicted signal-trans 96.2 0.005 1.1E-07 64.3 4.5 70 213-287 198-270 (610)
193 TIGR01302 IMP_dehydrog inosine 96.2 0.0064 1.4E-07 63.7 5.4 59 225-286 142-200 (450)
194 cd04598 CBS_pair_GGDEF_assoc T 96.2 0.0066 1.4E-07 50.4 4.5 57 224-284 59-118 (119)
195 cd04638 CBS_pair_25 The CBS do 96.0 0.012 2.6E-07 47.9 5.1 53 227-284 53-105 (106)
196 cd02205 CBS_pair The CBS domai 96.0 0.022 4.8E-07 45.8 6.6 48 300-349 2-49 (113)
197 cd04609 CBS_pair_PALP_assoc2 T 95.9 0.02 4.4E-07 46.4 5.9 47 300-349 2-48 (110)
198 COG2239 MgtE Mg/Co/Ni transpor 94.9 0.025 5.5E-07 58.8 4.0 61 222-286 192-252 (451)
199 COG4109 Predicted transcriptio 94.2 0.048 1E-06 54.0 3.9 59 224-286 247-305 (432)
200 PF03471 CorC_HlyC: Transporte 93.3 0.021 4.5E-07 45.0 -0.4 47 367-413 2-51 (81)
201 TIGR01186 proV glycine betaine 92.2 0.19 4.1E-06 51.2 4.8 56 226-286 302-357 (363)
202 KOG2550 IMP dehydrogenase/GMP 91.9 0.15 3.3E-06 51.5 3.5 59 223-285 168-226 (503)
203 COG1125 OpuBA ABC-type proline 89.7 1.5 3.3E-05 42.2 7.9 82 238-329 189-291 (309)
204 PRK10070 glycine betaine trans 88.3 0.56 1.2E-05 48.4 4.4 57 226-287 337-393 (400)
205 KOG0474 Cl- channel CLC-7 and 76.7 3.5 7.7E-05 44.2 4.7 54 228-285 692-745 (762)
206 TIGR03415 ABC_choXWV_ATP choli 60.0 9.5 0.00021 39.2 3.7 54 226-286 326-379 (382)
207 CHL00038 psbL photosystem II p 55.3 17 0.00036 23.9 2.9 22 30-52 15-36 (38)
208 KOG0476 Cl- channel CLC-2 and 53.3 10 0.00022 41.7 2.7 59 224-285 586-645 (931)
209 PF14163 SieB: Superinfection 51.6 71 0.0015 28.0 7.5 37 208-259 78-114 (151)
210 PRK00753 psbL photosystem II r 51.4 27 0.00059 23.0 3.4 22 30-52 16-37 (39)
211 PF02419 PsbL: PsbL protein; 48.6 31 0.00068 22.6 3.3 22 30-52 14-35 (37)
212 KOG0475 Cl- channel CLC-3 and 46.1 28 0.00061 37.6 4.5 55 226-285 639-693 (696)
213 KOG0476 Cl- channel CLC-2 and 44.1 29 0.00063 38.4 4.3 39 291-329 588-626 (931)
214 TIGR03278 methan_mark_10 putat 41.6 12 0.00026 38.7 1.1 87 310-426 293-387 (404)
215 COG1125 OpuBA ABC-type proline 38.4 54 0.0012 31.9 4.7 59 224-284 247-307 (309)
216 COG2216 KdpB High-affinity K+ 37.5 36 0.00078 36.1 3.7 34 250-285 417-450 (681)
217 PF11131 PhrC_PhrF: Rap-phr ex 36.8 30 0.00065 22.7 1.9 17 43-59 7-23 (37)
218 COG4175 ProV ABC-type proline/ 36.4 37 0.0008 34.0 3.4 48 237-287 336-383 (386)
219 PF15086 UPF0542: Uncharacteri 34.6 1.6E+02 0.0035 22.6 5.8 10 45-54 33-42 (74)
220 PF03563 Bunya_G2: Bunyavirus 33.5 1.1E+02 0.0023 29.7 5.9 40 126-179 194-233 (285)
221 PF07172 GRP: Glycine rich pro 29.6 82 0.0018 25.6 3.9 27 31-57 2-28 (95)
222 PF14147 Spore_YhaL: Sporulati 28.4 58 0.0013 23.2 2.4 17 35-53 3-19 (52)
223 PF15284 PAGK: Phage-encoded v 27.2 77 0.0017 23.4 2.9 24 40-63 8-31 (61)
224 TIGR00827 EIIC-GAT PTS system, 26.2 3.3E+02 0.0071 28.3 8.3 66 126-196 144-210 (407)
225 PF14044 NETI: NETI protein 21.8 93 0.002 22.7 2.5 28 240-268 3-35 (57)
No 1
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-66 Score=500.57 Aligned_cols=369 Identities=23% Similarity=0.325 Sum_probs=327.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 013310 34 WWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIY 113 (445)
Q Consensus 34 ~w~~~~~i~~~ll~lsafFs~~E~Al~s~~~~~l~~~~~~g~~~~~~~a~~~~~l~~~~~~~l~tili~n~~~~~~~~~~ 113 (445)
.|+ +++++++|+.+||||||+|+|+++++|.|++.++++|++ +|+++.+++++|+++++++|+|||++|++.+.+
T Consensus 2 ~~~-l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~~----~Akrv~kLL~k~drlig~iLIGNNLvNilasal 76 (423)
T COG4536 2 TWI-LIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGNR----GAKRVEKLLEKPDRLIGTILIGNNLVNILASAL 76 (423)
T ss_pred cch-HHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccch----hhHHHHHHhcCchheeeeeeecccHHHHHHHHH
Confidence 354 456677789999999999999999999999999999995 689999999999999999999999999876655
Q ss_pred HH----HHHHH---HHHHHHHHHHHHhhhccchhhHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh---hCCC
Q 013310 114 LD----KLFNQ---YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWV---LGHN 183 (445)
Q Consensus 114 ~~----~~~~~---~~a~~~~t~lilvfgEiiPK~la~~~~~~ia~~~a~~~~~~~~~~~P~~~~~~~~~~~~---~~~~ 183 (445)
.. .+||. .+|++++|+++++|+|++||++|..||++++...++++..+.++|+|++|.++++++.+ ||.+
T Consensus 77 aT~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~ 156 (423)
T COG4536 77 ATILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGIN 156 (423)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 43 34443 37788999999999999999999999999999999999999999999999999888764 6765
Q ss_pred c-----ccccHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHc
Q 013310 184 E-----ALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILAR 258 (445)
Q Consensus 184 ~-----~~~s~eEl~~li~~~~~e~~~~g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~ 258 (445)
. ...|.||+|.+++ +++.+|...+++++|+.+++++++.+|+|||+||.++..++.|++.+ +.++.+...
T Consensus 157 ~~~~~~~~~s~EElR~~v~----~~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s 231 (423)
T COG4536 157 LDQAVSQLSSKEELRTAVN----ESGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHS 231 (423)
T ss_pred cccccccccCHHHHHHHHH----HhhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhC
Confidence 2 5678999999998 45567888788999999999999999999999999999999999998 999999999
Q ss_pred CCcEEEeEeCCCCCEEEEEEhhhhhccCCCCC-Ccccccc--ccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCcc
Q 013310 259 GHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE-TPVSAVS--IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSK 335 (445)
Q Consensus 259 ~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~-~~v~~im--~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~ 335 (445)
.|+|+|+|.++.|+++|++|.||+++++.+.+ ..-.+++ .+++++||+.+++.+.+..|++++.|++.||||||.+.
T Consensus 232 ~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~ 311 (423)
T COG4536 232 PHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQ 311 (423)
T ss_pred CCCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEE
Confidence 99999999999999999999999999876544 2222332 47899999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccCCCCCCCCcccccccccCCCceEeeccCCCccccccccCCCCCC-CCCcccccc-ccCCCCCCc
Q 013310 336 TLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIEDGE 413 (445)
Q Consensus 336 Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~-~~tl~g~~~-~~~~~e~g~ 413 (445)
|+| |.+||++|++|++.+++. .-..+..++.++++.+||+.+++|+|+.++|++|.+ +.|++|+.+ .++.||+.+
T Consensus 312 GLV--TLEDIlEEIVGdftde~d-~~~~ev~~q~dgs~iidGs~~iRdlNr~l~W~Lp~e~a~TinGLvle~le~IP~~~ 388 (423)
T COG4536 312 GLV--TLEDILEEIVGDFTDEHD-TLAKEVIPQSDGSFIIDGSANVRDLNRALDWNLPDEDARTINGLVLEELEEIPEEG 388 (423)
T ss_pred eee--eHHHHHHHHhccccccCc-ccchhhcccCCCcEEEeCCCcHHHHHHhcCCCCCCCcchhHHHHHHHHHHhCCCCC
Confidence 999 999999999999995542 223467788899999999999999999999999977 999999999 999999865
Q ss_pred eE
Q 013310 414 VI 415 (445)
Q Consensus 414 l~ 415 (445)
..
T Consensus 389 ~~ 390 (423)
T COG4536 389 QA 390 (423)
T ss_pred eE
Confidence 44
No 2
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=100.00 E-value=2.4e-63 Score=508.61 Aligned_cols=356 Identities=22% Similarity=0.356 Sum_probs=310.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 013310 43 CVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLD----KLF 118 (445)
Q Consensus 43 ~~ll~lsafFs~~E~Al~s~~~~~l~~~~~~g~~~~~~~a~~~~~l~~~~~~~l~tili~n~~~~~~~~~~~~----~~~ 118 (445)
++|+++||||||+|+|++|+++.|++.++++|++ +|+++++++++|+++++|+++||+++|.+.+.++. .+|
T Consensus 2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~~----~a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~ 77 (408)
T TIGR03520 2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSK----KEQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF 77 (408)
T ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467899999999999999999999999999874 68899999999999999999999999887665433 233
Q ss_pred HH--------HHHHHHHHHHHHhhhccchhhHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh---hCCCcccc
Q 013310 119 NQ--------YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWV---LGHNEALF 187 (445)
Q Consensus 119 ~~--------~~a~~~~t~lilvfgEiiPK~la~~~~~~ia~~~a~~~~~~~~~~~P~~~~~~~~~~~~---~~~~~~~~ 187 (445)
+. .++++++|+++++|||++||++|.+||++++.+++++++++++++||++|+++++++++ +|.++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~~~~ 157 (408)
T TIGR03520 78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQKSNI 157 (408)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 21 13455678889999999999999999999999999999999999999999999988765 56655668
Q ss_pred cHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEe
Q 013310 188 RRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYS 267 (445)
Q Consensus 188 s~eEl~~li~~~~~e~~~~g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~ 267 (445)
|+|||+.+++. ++++| ++++|+++++|+++|++++|+|+|+||+++++++.+++++ ++++.+.+++|||+|||+
T Consensus 158 t~eEl~~lv~~----~~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~~ 231 (408)
T TIGR03520 158 SVDQLSQALEL----TDEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVYK 231 (408)
T ss_pred CHHHHHHHHHh----HhhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEEc
Confidence 99999999984 33456 5899999999999999999999999999999999999998 999999999999999999
Q ss_pred CCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCccc
Q 013310 268 GNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK 347 (445)
Q Consensus 268 ~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~ 347 (445)
++.|+++|+++.||++....++..++.++ ++++.+||+++++.++++.|++++.|+++|+||||+++|+| |.+|+++
T Consensus 232 ~~~d~ivGiv~~kDll~~~~~~~~~l~~~-~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiV--T~eDile 308 (408)
T TIGR03520 232 ETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLV--TLEDIIE 308 (408)
T ss_pred CCCCceEEEEEHHHHHhHhccCCCCHHHH-cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEE--EHHHHHH
Confidence 87789999999999987544333456776 57889999999999999999999999999999999999999 9999999
Q ss_pred ccccCCCCCCCCcccccccccCCCceEeeccCCCccccccccCCCC------CCCCCcccccc-ccCCCCCC
Q 013310 348 LNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQ------RSDSTTNGLIY-ASEDIEDG 412 (445)
Q Consensus 348 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~------~~~~tl~g~~~-~~~~~e~g 412 (445)
+++|++.++... ......+...+.|.++|..++.|+++.++.+++ +.+.|++||++ .++++|..
T Consensus 309 eivgei~de~d~-~~~~i~~~~~~~~~v~G~~~l~~l~~~l~~~~~~~~~~~~~~~Tl~G~i~~~l~~iP~~ 379 (408)
T TIGR03520 309 EIVGDISDEFDD-EDLIYSKIDDNNYVFEGKTSLKDFYKILKLEEDMFDEVKGEAETLAGFLLEISGGFPKK 379 (408)
T ss_pred HHhCCCCCcCCc-CccceEEeCCCeEEEEeccCHHHHHHHhCCCccccCCcCCCCccHHHHHHHHhCcCCCC
Confidence 999999887532 223345567888999999999999999998843 24899999999 99999874
No 3
>PRK11573 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-63 Score=509.67 Aligned_cols=353 Identities=20% Similarity=0.283 Sum_probs=307.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----HHHH--
Q 013310 46 VLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLD----KLFN-- 119 (445)
Q Consensus 46 l~lsafFs~~E~Al~s~~~~~l~~~~~~g~~~~~~~a~~~~~l~~~~~~~l~tili~n~~~~~~~~~~~~----~~~~-- 119 (445)
+++||||||+|+|++|+++.+++.++++|++ +|+++++++++|+++++|+++||+++|.+.+.+.. .+++
T Consensus 2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~----~a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~ 77 (413)
T PRK11573 2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNR----SAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA 77 (413)
T ss_pred eehhhHHHHHHHHHHHcCHHHHHHHHHcCCh----hHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4679999999999999999999999999984 68899999999999999999999999887665432 2332
Q ss_pred -HHHHHHHHHHHHHhhhccchhhHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh---hCCCc-----ccccHH
Q 013310 120 -QYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWV---LGHNE-----ALFRRA 190 (445)
Q Consensus 120 -~~~a~~~~t~lilvfgEiiPK~la~~~~~~ia~~~a~~~~~~~~~~~P~~~~~~~~~~~~---~~~~~-----~~~s~e 190 (445)
.+++++++|+++++|||++||++|.+||+++|.++++++++++++++|++|+++++++.+ +|.++ ..+|+|
T Consensus 78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e 157 (413)
T PRK11573 78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE 157 (413)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence 235567788999999999999999999999999999999999999999999998887764 56542 358999
Q ss_pred HHHHHHHHhhhhhccCCCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCC
Q 013310 191 QLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNP 270 (445)
Q Consensus 191 El~~li~~~~~e~~~~g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~ 270 (445)
||+.+++. ++ +.++++|+++++|+++|++.+|+|+|+||+++++++.+++++ ++++.+.+++|||+|||+++.
T Consensus 158 El~~lv~~----~~--~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~ 230 (413)
T PRK11573 158 ELRTIVHE----SR--SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSL 230 (413)
T ss_pred HHHHHHHH----Hh--hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCC
Confidence 99999983 22 259999999999999999999999999999999999999998 999999999999999999988
Q ss_pred CCEEEEEEhhhhhccCCCC-C---CccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcc
Q 013310 271 KNIIGLLLVKSLLTVRPET-E---TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKP 346 (445)
Q Consensus 271 ~~ivGiv~~kDll~~~~~~-~---~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~ 346 (445)
|+++|++|.||++....++ + ..+.++ .+|+.+||+++++.++++.|++++.|+++|+||||+++|+| |.+|++
T Consensus 231 D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiV--TleDil 307 (413)
T PRK11573 231 DDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLV--TVEDIL 307 (413)
T ss_pred CceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEe--eHHHHH
Confidence 9999999999998643221 1 122243 68899999999999999999999999999999999999999 999999
Q ss_pred cccccCCCCCCCCcccccccccCCCceEeeccCCCccccccccCCCCCC-CCCcccccc-ccCCCCCC
Q 013310 347 KLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIEDG 412 (445)
Q Consensus 347 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~-~~tl~g~~~-~~~~~e~g 412 (445)
++++|++.++..........+...+.|.++|..+++|+++.++.++++. +.|++||++ .++++|.-
T Consensus 308 EeivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~d~~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~~ 375 (413)
T PRK11573 308 EEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVA 375 (413)
T ss_pred HHHhCCCCcccCcccccceEEecCCEEEEEeeeEHHHHHHHhCCCCCCCCCeeHHHHHHHHhCcCCCC
Confidence 9999999887543222234555677899999999999999999998866 899999999 99999873
No 4
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=100.00 E-value=1.3e-57 Score=470.04 Aligned_cols=362 Identities=25% Similarity=0.334 Sum_probs=311.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013310 38 YAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKL 117 (445)
Q Consensus 38 ~~~i~~~ll~lsafFs~~E~Al~s~~~~~l~~~~~~g~~~~~~~a~~~~~l~~~~~~~l~tili~n~~~~~~~~~~~~~~ 117 (445)
.++++++|+++|||||++|+|++|++|.|+++++++|++ +|.+++++.++++.+++++++|+++++...+......
T Consensus 6 ~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~~----~a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~~~~~ 81 (429)
T COG1253 6 TLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNK----RAKAALKLIERLNRYLSTVQLGITLVSLLLGAVGEPA 81 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccCH----hHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677799999999999999999999999999999874 6889999999999999999999999887665544332
Q ss_pred HH----HHH-----H----HHHHHHHHHhhhccchhhHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh---C
Q 013310 118 FN----QYV-----A----IILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL---G 181 (445)
Q Consensus 118 ~~----~~~-----a----~~~~t~lilvfgEiiPK~la~~~~~~ia~~~a~~~~~~~~~~~P~~~~~~~~~~~~~---~ 181 (445)
+. .+. + +++.|+++++|||++||++|++||++++.++++++++++++++|++|++++++++++ |
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il~l~~ 161 (429)
T COG1253 82 LAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILRLFG 161 (429)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 21 111 1 456788899999999999999999999999999999999999999999999998864 4
Q ss_pred CC---c--ccccHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHH
Q 013310 182 HN---E--ALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKIL 256 (445)
Q Consensus 182 ~~---~--~~~s~eEl~~li~~~~~e~~~~g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~ 256 (445)
.+ + ...+.++++ +++ ++.++|.++++|++|++|+|+|++++|+++|+||+++++++.+.+.+ ++.+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~~~~ 235 (429)
T COG1253 162 VEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELIL 235 (429)
T ss_pred CCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHHHHH
Confidence 33 2 345677777 776 56678999999999999999999999999999999999999999998 9999999
Q ss_pred HcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCC-ccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCcc
Q 013310 257 ARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET-PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSK 335 (445)
Q Consensus 257 ~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~-~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~ 335 (445)
+++|||+|||+++.|+++|++|.||++....+++. .....-.+|+++||+++++.+++++|++++.|+|+|+||||++.
T Consensus 236 ~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~ 315 (429)
T COG1253 236 ESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVE 315 (429)
T ss_pred hCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeE
Confidence 99999999999888999999999999987655432 22222246999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccCCCCCCCCcccccccccCCCceEeeccCCCccccccccCCCCCC--CCCcccccc-ccCCCCC
Q 013310 336 TLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRS--DSTTNGLIY-ASEDIED 411 (445)
Q Consensus 336 Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~--~~tl~g~~~-~~~~~e~ 411 (445)
|+| |.+||+++++|++.++.....+....+...++|.++|.+++.|+++.++.+.+.. ++|++|+++ .++++|.
T Consensus 316 GlV--TleDIiEeIvGei~de~d~~~~~~~~~~~~~~~~v~G~~~l~e~~~~l~~~~~~~~~~~Ti~G~v~~~lg~iP~ 392 (429)
T COG1253 316 GLV--TLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDGWLVDGRVPLEELEELLGIDLDEEEDYDTIAGLVLSLLGRIPK 392 (429)
T ss_pred EEe--EHHHHHHHHhCCCcCcccccccccceEecCCcEEEeccccHHHHHHHhCCCCcccCCcccHHHHHHHHhCcCCC
Confidence 999 9999999999999998765443334444444499999999999999999986444 999999999 9999994
No 5
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=100.00 E-value=1.1e-33 Score=277.50 Aligned_cols=226 Identities=21% Similarity=0.261 Sum_probs=197.3
Q ss_pred hhhhCCCcccccHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHH
Q 013310 177 DWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKIL 256 (445)
Q Consensus 177 ~~~~~~~~~~~s~eEl~~li~~~~~e~~~~g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~ 256 (445)
..++|.++ .|++||+.+++ ++.++|.++++|++++.++++|++.+|+++|+||.++++++.+++++ ++++.+.
T Consensus 24 ~~~~~~~~--~t~eEl~~l~~----~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i~ 96 (292)
T PRK15094 24 SQLFHGEP--KNRDELLALIR----DSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVII 96 (292)
T ss_pred HHHcCCCC--CCHHHHHHHHH----hHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHHH
Confidence 33456554 58999999998 45567999999999999999999999999999999999999999998 9999999
Q ss_pred HcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC--CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCc
Q 013310 257 ARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKS 334 (445)
Q Consensus 257 ~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~--~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~ 334 (445)
+++|+++|||+++.++++|+|+.+|++.....+ ..++.++| +++++|++++++.++++.|++++.|++||+||||++
T Consensus 97 ~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l~-r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~v 175 (292)
T PRK15094 97 ESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL-RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGV 175 (292)
T ss_pred hcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHHc-CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCE
Confidence 999999999987668999999999998643221 23467764 677799999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccccccCCCCCCCCcccccccccCCCceEeeccCCCccccccccCCCCCC-CCCcccccc-ccCCCCCC
Q 013310 335 KTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIEDG 412 (445)
Q Consensus 335 ~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~-~~tl~g~~~-~~~~~e~g 412 (445)
+|+| |.+|+++++.|++.++..........+...+.|.++|.+++.++++.++..++.. +.|++||++ .++++|..
T Consensus 176 iGiV--TleDIle~ivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~dl~~~l~~~l~~~~~~Tl~G~i~~~l~~iP~~ 253 (292)
T PRK15094 176 SGLV--TIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPAR 253 (292)
T ss_pred EEEe--EHHHHHHHHhCCCccccccccccccEEeCCCeEEEEeccCHHHHHHHhCCCCCCCCCccHHHHHHHHhCcCCCC
Confidence 9999 9999999999999887653332345666788899999999999999999988855 999999999 99999874
No 6
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4e-33 Score=253.58 Aligned_cols=230 Identities=20% Similarity=0.250 Sum_probs=204.5
Q ss_pred HHHHHhhhhCCCcccccHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHH
Q 013310 172 IGKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEA 251 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~s~eEl~~li~~~~~e~~~~g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~ 251 (445)
+.++++.+|..++ -+++||-.+++ .+++.+.++++-..|++++++..+.+|+|+|.||+++++++.+.++. ++
T Consensus 19 fe~L~~~~f~gEp--knr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~~ 91 (293)
T COG4535 19 FERLLSQLFHGEP--KNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-EC 91 (293)
T ss_pred HHHHHHHHhcCCC--cCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-HH
Confidence 3455655554343 46899999998 45667899999999999999999999999999999999999999998 99
Q ss_pred HHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC--CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 252 MGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 252 l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~--~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
+..+.+.+||||||+.++++++.|+++.|||++.+..+ ...++++ .||.++||++..+...|+.|+.++.|||+|+|
T Consensus 92 l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIViD 170 (293)
T COG4535 92 LDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVID 170 (293)
T ss_pred HHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEEe
Confidence 99999999999999999999999999999999976543 2456664 89999999999999999999999999999999
Q ss_pred cCCCccCCCCCCCCCcccccccCCCCCCCCcccccccccCCCceEeeccCCCccccccccCCCC-CCCCCcccccc-ccC
Q 013310 330 AKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQ-RSDSTTNGLIY-ASE 407 (445)
Q Consensus 330 e~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~-~~~~tl~g~~~-~~~ 407 (445)
|||++.|+| |.+||++.|+|++.++.......-+.+.....|.|..-++|.++|..|+.... ++.+|+|||.. .++
T Consensus 171 EfGgVsGLV--TIEDiLEqIVGdIEDE~Deee~~dI~~ls~~~~~VrALT~IedFNe~F~t~FsDeevDTIGGLVm~afG 248 (293)
T COG4535 171 EFGGVSGLV--TIEDILEQIVGDIEDEYDEEEDADIRQLSRHTWRVRALTEIEDFNEAFGTHFSDEEVDTIGGLVMQAFG 248 (293)
T ss_pred ccCCeeeeE--EHHHHHHHHhcccccccchhhhhhhHhhcCCceEEEecccHHHHHHHhcCCCChhhhhhhhHHHHHHhc
Confidence 999999999 99999999999999998776555578889999999999999999999998655 45999999999 888
Q ss_pred CCCC
Q 013310 408 DIED 411 (445)
Q Consensus 408 ~~e~ 411 (445)
+.|.
T Consensus 249 hLP~ 252 (293)
T COG4535 249 HLPA 252 (293)
T ss_pred cCCC
Confidence 8886
No 7
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=99.96 E-value=9.4e-30 Score=264.28 Aligned_cols=314 Identities=54% Similarity=0.803 Sum_probs=266.5
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHH-HHHHHHHHHHhhhHHHHHHHHHHHH
Q 013310 27 GIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKK-QAAAIFPVVQKQHQLLVTLLLCNAA 105 (445)
Q Consensus 27 ~~~~~s~~w~~~~~i~~~ll~lsafFs~~E~Al~s~~~~~l~~~~~~g~~~~~~-~a~~~~~l~~~~~~~l~tili~n~~ 105 (445)
..|...-+|+.++.++++|++++++|||.+.++++.+...++.+.+.|....++ .++++....++.+.+++|++++|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~~ 83 (498)
T KOG2118|consen 4 AIPKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNSI 83 (498)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhhh
Confidence 345555666677777888999999999999999999999999999999877665 6777888899999999999999999
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCc
Q 013310 106 SMEA-LPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNE 184 (445)
Q Consensus 106 ~~~~-~~~~~~~~~~~~~a~~~~t~lilvfgEiiPK~la~~~~~~ia~~~a~~~~~~~~~~~P~~~~~~~~~~~~~~~~~ 184 (445)
++.+ +..++.....+|.++.+++..+++|||++|++++.+|...+...+.|+.++++++++|+.||+++. ++.+|..-
T Consensus 84 ~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~~ 162 (498)
T KOG2118|consen 84 ATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLNL 162 (498)
T ss_pred ccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhcccc
Confidence 9888 666665666667788899999999999999999999999999999999999999999999999988 77777654
Q ss_pred -ccccHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEE
Q 013310 185 -ALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRV 263 (445)
Q Consensus 185 -~~~s~eEl~~li~~~~~e~~~~g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~ 263 (445)
..+.+.+++.++..+..|+.+ |.+..+|..++.+++++.++.++|+|+|-.++..++.+..+.++....+.++||||+
T Consensus 163 ~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sri 241 (498)
T KOG2118|consen 163 GEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRI 241 (498)
T ss_pred ccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCccee
Confidence 345567888999877766655 889999999999999999999999999999999999999998677788889999999
Q ss_pred EeEeCCCCCEEEEEEhhhhhccC----CCCCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCC
Q 013310 264 PVYSGNPKNIIGLLLVKSLLTVR----PETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPP 339 (445)
Q Consensus 264 PV~~~~~~~ivGiv~~kDll~~~----~~~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~ 339 (445)
||++.+..+.+|.+-...+++.. .....++.+.+.++.+.+|++++..+.++.|++.+.|++.|.+ .....|++
T Consensus 242 pv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~- 319 (498)
T KOG2118|consen 242 PVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVL- 319 (498)
T ss_pred eeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeE-
Confidence 99998777778776666666654 3344677788889999999999999999999999999999886 33334444
Q ss_pred CCCCCc
Q 013310 340 MTDGKK 345 (445)
Q Consensus 340 ~T~~di 345 (445)
|.+|+
T Consensus 320 -~l~~~ 324 (498)
T KOG2118|consen 320 -TLEDL 324 (498)
T ss_pred -eccch
Confidence 44444
No 8
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=99.95 E-value=6.3e-27 Score=214.71 Aligned_cols=167 Identities=27% Similarity=0.474 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-
Q 013310 39 AGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKL- 117 (445)
Q Consensus 39 ~~i~~~ll~lsafFs~~E~Al~s~~~~~l~~~~~~g~~~~~~~a~~~~~l~~~~~~~l~tili~n~~~~~~~~~~~~~~- 117 (445)
++++++++++||||||+|+|++++++.+++.++++|+ ++++++.++++||+++++|++++|++++.+.+.+....
T Consensus 3 l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~----~~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~~ 78 (183)
T PF01595_consen 3 LLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGD----KRARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVLA 78 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCC----HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778899999999999999999999999999988 36889999999999999999999999988766543322
Q ss_pred ---HH----HHHHHHHHHHHHHhhhccchhhHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh---CCC---c
Q 013310 118 ---FN----QYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL---GHN---E 184 (445)
Q Consensus 118 ---~~----~~~a~~~~t~lilvfgEiiPK~la~~~~~~ia~~~a~~~~~~~~~~~P~~~~~~~~~~~~~---~~~---~ 184 (445)
++ .+++++++++++++|||++||++|.+||++++.+.++++++++++++|+++++.++.+++. |.+ +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~~ 158 (183)
T PF01595_consen 79 SNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEED 158 (183)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 32 2355677788899999999999999999999999999999999999999999999888753 433 2
Q ss_pred ccccHHHHHHHHHHhhhhhccCCCCCHHH
Q 013310 185 ALFRRAQLKALVTIHSQEAGKGGELTHDE 213 (445)
Q Consensus 185 ~~~s~eEl~~li~~~~~e~~~~g~l~~~E 213 (445)
..+|+|||+.+++ +++++|.++++|
T Consensus 159 ~~~s~eel~~lv~----~~~e~G~i~~~E 183 (183)
T PF01595_consen 159 PAVSEEELRSLVE----EGEEEGVIEEEE 183 (183)
T ss_pred CCCCHHHHHHHHH----hHHHCCCCCCCC
Confidence 6789999999999 566789998876
No 9
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.71 E-value=8.1e-16 Score=145.03 Aligned_cols=136 Identities=15% Similarity=0.278 Sum_probs=112.2
Q ss_pred cccHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHh-------hcCcccccccccccCCceEEeeCCCCccHHHHHHHHHc
Q 013310 186 LFRRAQLKALVTIHSQEAGKGGELTHDETTIISGA-------LDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILAR 258 (445)
Q Consensus 186 ~~s~eEl~~li~~~~~e~~~~g~l~~~E~~~l~~~-------~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~ 258 (445)
.++.+|+.+.++. -.|-=.++.++-+.+.+- -++.+.++.|||++ ++++++.+++++ ++.+.+.+|
T Consensus 202 gfs~~Dld~aL~~----~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H 274 (382)
T COG3448 202 GFSSEDLDAALQR----LGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH 274 (382)
T ss_pred CCCHHHHHHHHHh----cCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence 4788888888862 223445666654444332 23578899999996 899999999998 999999999
Q ss_pred CCcEEEeEeCCCCCEEEEEEhhhhhccCCC---------CCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 259 GHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 259 ~~s~~PV~~~~~~~ivGiv~~kDll~~~~~---------~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
++..+||.|++ .+++|+|+.+|+++.... .+.+++.+|..++.++.++++..+++..|.+.+.|.+||+|
T Consensus 275 ~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld 353 (382)
T COG3448 275 RIKALPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD 353 (382)
T ss_pred Ccccccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc
Confidence 99999999976 799999999999873211 24678999999999999999999999999999999999999
No 10
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.68 E-value=8.3e-17 Score=149.24 Aligned_cols=107 Identities=16% Similarity=0.289 Sum_probs=98.2
Q ss_pred HHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC--CCcccc
Q 013310 218 SGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSA 295 (445)
Q Consensus 218 ~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~--~~~v~~ 295 (445)
..+.+..+.+|+++|++ ++.++.+|.|+. |+.+.+.+++++..||+|+ |+++|+++..|+..+..++ +.+|++
T Consensus 164 ~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~~ 238 (294)
T COG2524 164 SKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVSD 238 (294)
T ss_pred eeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHHH
Confidence 45566788999999996 789999999998 9999999999999999987 5999999999999877664 478999
Q ss_pred ccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 296 VSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 296 im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
+|.++++++.+|+.+.||++.|.++++..++|+|
T Consensus 239 ~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~d 272 (294)
T COG2524 239 YMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTD 272 (294)
T ss_pred HhccCCceEcCchhHHHHHHHHHhcCcceEEEEc
Confidence 9999999999999999999999999999999999
No 11
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.67 E-value=5.1e-16 Score=161.65 Aligned_cols=134 Identities=16% Similarity=0.153 Sum_probs=113.6
Q ss_pred cccHHHHHHHHHHhhhhhccC------CCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHH--
Q 013310 186 LFRRAQLKALVTIHSQEAGKG------GELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILA-- 257 (445)
Q Consensus 186 ~~s~eEl~~li~~~~~e~~~~------g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~-- 257 (445)
.++.+|+..+++. ..++ +.++++|++.+++++++++.+|+++|++ ++++++.+.++. ++++.+++
T Consensus 89 ~l~~dd~~~ll~~----l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~ 161 (449)
T TIGR00400 89 EMNLDDVIDLLEE----VPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA 161 (449)
T ss_pred cCChhHHHHHHHh----CCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence 5678888888873 3333 4799999999999999999999999985 789999999998 99999975
Q ss_pred ---cCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 258 ---RGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 258 ---~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
++...+||+|++ ++++|+++.+|++... ++.+++++|.++++++++++++.++++.|++++.+.+||+|
T Consensus 162 ~~~~~~~~v~Vvd~~-~~l~GvV~l~dLl~a~--~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD 233 (449)
T TIGR00400 162 KTKEDIYTLYVTNES-KHLKGVLSIRDLILAK--PEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD 233 (449)
T ss_pred CCccceeEEEEECCC-CeEEEEEEHHHHhcCC--CCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc
Confidence 233455666654 7899999999998653 34679999888888999999999999999999999999999
No 12
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.60 E-value=7.8e-15 Score=152.59 Aligned_cols=150 Identities=15% Similarity=0.250 Sum_probs=128.9
Q ss_pred ccccHHHHHHHHHHhhhhhccCCCCCH-----HHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcC
Q 013310 185 ALFRRAQLKALVTIHSQEAGKGGELTH-----DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG 259 (445)
Q Consensus 185 ~~~s~eEl~~li~~~~~e~~~~g~l~~-----~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~ 259 (445)
..+|++|+..++.. ....|.++. +|++++++++++++. |.+ ++++++++.++. ++++.|.+++
T Consensus 43 dtvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~~-----~~~--~~vtl~~~~tv~-eal~~m~~~~ 110 (450)
T TIGR01302 43 DTVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAENG-----IIS--DPVTISPETTVA-DVLELMERKG 110 (450)
T ss_pred CccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccCc-----eec--CceEeCCCCCHH-HHHHHHHHcC
Confidence 46899999999873 334688884 899999999877664 553 578899999998 9999999999
Q ss_pred CcEEEeEeCCC--CCEEEEEEhhhhhccCCCCCCccccccc-cCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccC
Q 013310 260 HSRVPVYSGNP--KNIIGLLLVKSLLTVRPETETPVSAVSI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKT 336 (445)
Q Consensus 260 ~s~~PV~~~~~--~~ivGiv~~kDll~~~~~~~~~v~~im~-~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~G 336 (445)
++++||++++. ++++|+|+.+|++... ....+++++|. .+++++++++++.++++.|++++.+.+||+|++|.+.|
T Consensus 111 ~s~lpVvd~~~~~~~lvGIVt~rDL~~~~-~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvG 189 (450)
T TIGR01302 111 ISGIPVVEDGDMTGKLVGIITKRDIRFVK-DKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVG 189 (450)
T ss_pred CCEEEEEeCCCCCCeEEEEEEHHHHhhhh-cCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEE
Confidence 99999998753 6899999999997643 23467889987 48999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccc
Q 013310 337 LPPMTDGKKPKLN 349 (445)
Q Consensus 337 iv~~T~~di~~~i 349 (445)
+| |.+|+++++
T Consensus 190 iV--T~~DIl~~~ 200 (450)
T TIGR01302 190 LI--TMKDIVKRR 200 (450)
T ss_pred EE--EhHHhhhcc
Confidence 99 999999876
No 13
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.59 E-value=5.8e-15 Score=151.73 Aligned_cols=130 Identities=18% Similarity=0.150 Sum_probs=109.1
Q ss_pred CCCcccccccc--CCceeCCCCCHHHHHHHHhhCCCeEEEEEccC-CCccCCCCCCCCCcccccccCCCCCCCCcccccc
Q 013310 289 TETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSK 365 (445)
Q Consensus 289 ~~~~v~~im~~--~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~-G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~ 365 (445)
++.+++++|++ ++.+++.++++.++++.+.+++.+..||+++. ++++|++ +.+|++....+ +. ...
T Consensus 189 ~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv--~~kDll~~~~~----~~-----~~l 257 (408)
T TIGR03520 189 GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVL--YIKDLLPHLNK----KN-----FDW 257 (408)
T ss_pred CCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEE--EHHHHHhHhcc----CC-----CCH
Confidence 34688999975 68899999999999999999999999999864 6899999 99999854321 10 011
Q ss_pred cccCCCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHHhcCccCCCCccc
Q 013310 366 QDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEY 439 (445)
Q Consensus 366 ~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l~g~ei~de~d~~ 439 (445)
.+.-...+.|++++++.++.+.|+....+++.++| |||+++||||.+||+|+++| ||.||+|.+
T Consensus 258 ~~~~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD---------E~G~~~GiVT~eDileeivg-ei~de~d~~ 321 (408)
T TIGR03520 258 QSLLREPYFVPENKKLDDLLRDFQEKKNHLAIVVD---------EYGGTSGLVTLEDIIEEIVG-DISDEFDDE 321 (408)
T ss_pred HHHcCCCeEeCCCCcHHHHHHHHHhcCceEEEEEc---------CCCCEEEEEEHHHHHHHHhC-CCCCcCCcC
Confidence 12223568999999999999999999999999999 99999999999999999998 999998854
No 14
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.57 E-value=1.2e-14 Score=140.26 Aligned_cols=105 Identities=22% Similarity=0.347 Sum_probs=95.8
Q ss_pred hcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccC
Q 013310 221 LDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300 (445)
Q Consensus 221 ~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~ 300 (445)
+.-+=.+|.|+|+|..+..++..+++++ +..+...+.||+||||+|.. .+++|+|+.||+....+ +.++..+|.+.
T Consensus 183 IKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~~--~t~ieKVMtkn 258 (432)
T COG4109 183 IKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKKP--STTIEKVMTKN 258 (432)
T ss_pred hhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCCC--CccHHHHhccC
Confidence 3344578999999999999999999998 99999999999999999976 78999999999987643 57888999999
Q ss_pred CceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 301 ~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
+.+|.+.+++..+.+.|...+..+.||+|
T Consensus 259 p~tv~~~tsVAsvaq~MiwE~iem~PVv~ 287 (432)
T COG4109 259 PITVRAKTSVASVAQMMIWEGIEMLPVVD 287 (432)
T ss_pred CeeecccchHHHHHHHHHhccceeeeEEc
Confidence 99999999999999999999999999999
No 15
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.53 E-value=8e-14 Score=144.44 Aligned_cols=130 Identities=17% Similarity=0.098 Sum_probs=110.5
Q ss_pred CCccccccc--cCCceeCCCCCHHHHHHHHhhCCCeEEEEEc-cCCCccCCCCCCCCCcccccccCCCCCCCCccccccc
Q 013310 290 ETPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK-AKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQ 366 (445)
Q Consensus 290 ~~~v~~im~--~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd-e~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~ 366 (445)
+.+++++|+ .++.+++.+.++.++.+.+.+++.+..||++ .-++++|++ ..+|++........ ... ..
T Consensus 205 ~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv--~~Kdll~~~~~~~~-~~~------~~ 275 (429)
T COG1253 205 DRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIV--HVKDLLRALLDGQS-DLD------LR 275 (429)
T ss_pred CcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEE--EHHHHHHHHhcCcc-ccc------hh
Confidence 367888885 4677899999999999999999999999999 778899999 99999987764432 100 01
Q ss_pred ccCCCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHHhcCccCCCCcc
Q 013310 367 DEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDE 438 (445)
Q Consensus 367 ~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l~g~ei~de~d~ 438 (445)
..-...+.|++++++.++.+.|+....+++.++| |||++.|+||++||+|+++| ||.||+|.
T Consensus 276 ~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD---------EyG~~~GlVTleDIiEeIvG-ei~de~d~ 337 (429)
T COG1253 276 VLVRPPLFVPETLSLSDLLEEFREERTHMAIVVD---------EYGGVEGLVTLEDIIEEIVG-EIPDEHDE 337 (429)
T ss_pred hcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEE---------cCCCeEEEeEHHHHHHHHhC-CCcCcccc
Confidence 1122778999999999999999999999999999 99999999999999999998 99999986
No 16
>PRK11573 hypothetical protein; Provisional
Probab=99.51 E-value=7.5e-14 Score=143.59 Aligned_cols=133 Identities=14% Similarity=0.221 Sum_probs=107.7
Q ss_pred CCccccccc--cCCceeCCCCCHHHHHHHHhhCCCeEEEEEccC-CCccCCCCCCCCCcccccccCCCCCCCCccccccc
Q 013310 290 ETPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQ 366 (445)
Q Consensus 290 ~~~v~~im~--~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~-G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~ 366 (445)
+.+++++|+ .++..++.++++.++++.+.+++.+..||+++. ++++|++ ..+|++...... ... +.....
T Consensus 186 ~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv--~~kDll~~~~~~---~~~--~~~~l~ 258 (413)
T PRK11573 186 KVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISML--RVREAYRLMTEK---KEF--TKENML 258 (413)
T ss_pred CCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEE--EHHHHHHHhhcc---CcC--CHHHHH
Confidence 467889985 567789999999999999999999999998654 7899999 888887533211 000 000111
Q ss_pred ccCCCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHHhcCccCCCCccc
Q 013310 367 DEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEY 439 (445)
Q Consensus 367 ~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l~g~ei~de~d~~ 439 (445)
+.....+.|++++++.++.+.|+.+..+++.++| |||++.||||++||+|+++| ||.||+|++
T Consensus 259 ~~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD---------EyG~~~GiVTleDilEeivG-ei~de~d~~ 321 (413)
T PRK11573 259 RAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD---------EYGDIQGLVTVEDILEEIVG-DFTTSMSPT 321 (413)
T ss_pred hhccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe---------cCCCeEEEeeHHHHHHHHhC-CCCcccCcc
Confidence 2234578899999999999999999999999999 99999999999999999998 999998853
No 17
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.47 E-value=6.3e-13 Score=139.76 Aligned_cols=150 Identities=21% Similarity=0.296 Sum_probs=126.8
Q ss_pred ccccHHHHHHHHHHhhhhhccCCCCC-----HHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcC
Q 013310 185 ALFRRAQLKALVTIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG 259 (445)
Q Consensus 185 ~~~s~eEl~~li~~~~~e~~~~g~l~-----~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~ 259 (445)
...|++|+...+. +....|.|. ++++++++++.+ ++++|.+ ++++++++.++. ++++.|.+++
T Consensus 50 ~~vT~~ela~ava----~~GglG~i~~~~~~e~~~~~I~~vk~-----~~dim~~--~~v~i~~~~tv~-ea~~~m~~~~ 117 (486)
T PRK05567 50 DTVTEARMAIAMA----REGGIGVIHKNMSIEEQAEEVRKVKR-----SESGVVT--DPVTVTPDTTLA-EALALMARYG 117 (486)
T ss_pred CCcCHHHHHHHHH----hCCCCCEecCCCCHHHHHHHHHHhhh-----hhhcccC--CCeEeCCCCCHH-HHHHHHHHhC
Confidence 4578999999986 344557777 477889988855 5667764 688899999998 9999999999
Q ss_pred CcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccc-cCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCC
Q 013310 260 HSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP 338 (445)
Q Consensus 260 ~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~-~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv 338 (445)
++++||++++ ++++|+|+.+|+.... ....++.++|. ++++++++++++.++++.|.+++.+.+||+|++|.+.|+|
T Consensus 118 ~~~lpVvd~~-g~lvGiVt~~DL~~~~-~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiI 195 (486)
T PRK05567 118 ISGVPVVDEN-GKLVGIITNRDVRFET-DLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI 195 (486)
T ss_pred CCEEEEEccC-CEEEEEEEHHHhhhcc-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEE
Confidence 9999999864 8999999999997543 23467889987 7889999999999999999999999999999999999999
Q ss_pred CCCCCCcccccc
Q 013310 339 PMTDGKKPKLNE 350 (445)
Q Consensus 339 ~~T~~di~~~i~ 350 (445)
|.+|+++...
T Consensus 196 --T~~DLl~~~~ 205 (486)
T PRK05567 196 --TVKDIEKAEE 205 (486)
T ss_pred --EhHHhhhhhh
Confidence 8888887653
No 18
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=6.7e-13 Score=111.04 Aligned_cols=91 Identities=27% Similarity=0.390 Sum_probs=79.5
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC--CCccccccccCCceeCCCCCHHHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIRRIPRVPSDMPLYDIL 314 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~--~~~v~~im~~~~~~V~~~~~l~~al 314 (445)
++.+++.+.++. ++++.|.+++++++||++++ ++++|+++.+|+.+...+. +.++.++|..++.++++++++.+++
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al 79 (111)
T cd04603 2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLL 79 (111)
T ss_pred ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHH
Confidence 456789999998 99999999999999999864 7899999999998643221 2568899988889999999999999
Q ss_pred HHHhhCCCeEEEEEc
Q 013310 315 NEFQKGSSHMAAVVK 329 (445)
Q Consensus 315 ~~m~~~~~~~a~Vvd 329 (445)
+.|.+++.+.+||+|
T Consensus 80 ~~m~~~~~~~lpVvd 94 (111)
T cd04603 80 RIFRETEPPVVAVVD 94 (111)
T ss_pred HHHHHcCCCeEEEEc
Confidence 999999999999999
No 19
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.44 E-value=3.9e-13 Score=134.62 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=90.1
Q ss_pred cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----CCCcccccccc
Q 013310 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIR 299 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~im~~ 299 (445)
...+|+|+|++.++++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|+.+.... .+.++.++|.+
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~ 277 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP 277 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence 5678999998644788999999998 99999998888888888754 799999999998764332 23579999999
Q ss_pred CCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 300 ~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
++.++++++++.++++.|.+++.+.+||+|
T Consensus 278 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~ 307 (326)
T PRK10892 278 GGIRVRPGILAVDALNLMQSRHITSVLVAD 307 (326)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCcEEEEee
Confidence 999999999999999999999999999997
No 20
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=1e-12 Score=107.93 Aligned_cols=80 Identities=14% Similarity=0.345 Sum_probs=71.5
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~ 316 (445)
+++++++++++. ++.+.|.+++++.+||++++.++++|+++.+|+.+... +.++++++++.++++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-------------~~~v~~~~~l~~a~~~ 67 (98)
T cd04618 2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-------------LVSIHPERSLFDAALL 67 (98)
T ss_pred eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-------------eEEeCCCCcHHHHHHH
Confidence 578899999998 99999999999999999864478999999999876321 6789999999999999
Q ss_pred HhhCCCeEEEEEcc
Q 013310 317 FQKGSSHMAAVVKA 330 (445)
Q Consensus 317 m~~~~~~~a~Vvde 330 (445)
|.+++.+.+||+|+
T Consensus 68 m~~~~~~~lpVvd~ 81 (98)
T cd04618 68 LLKNKIHRLPVIDP 81 (98)
T ss_pred HHHCCCCEeeEEEC
Confidence 99999999999994
No 21
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=1.6e-12 Score=110.18 Aligned_cols=91 Identities=15% Similarity=0.223 Sum_probs=74.9
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCC-----Cccc------cccccCCceeC
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE-----TPVS------AVSIRRIPRVP 305 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~-----~~v~------~im~~~~~~V~ 305 (445)
++.+++++.++. ++++.|.+++++++||++++ ++++|+++.+|++....++. .++. +.|..++.+++
T Consensus 2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (120)
T cd04641 2 NIATARPDTPLI-DVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS 79 (120)
T ss_pred CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence 567899999998 99999999999999999864 88999999999986432211 1122 22335577899
Q ss_pred CCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 306 SDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 306 ~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
+++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~~l~~~~~~m~~~~~~~l~Vvd 103 (120)
T cd04641 80 PDDCLRTIFDLIVKARVHRLVVVD 103 (120)
T ss_pred CCCcHHHHHHHHHhcCccEEEEEC
Confidence 999999999999999999999999
No 22
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=1.7e-12 Score=107.78 Aligned_cols=91 Identities=12% Similarity=0.258 Sum_probs=80.1
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~ 316 (445)
++.+++++.++. ++++.+.+++++++||++++ ++++|+++.+|+++....+..++.++|.+++.++++++++.++++.
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 80 (110)
T cd04605 3 PVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARK 80 (110)
T ss_pred CCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHH
Confidence 567889999998 99999999999999999865 8999999999998654333346888888889999999999999999
Q ss_pred HhhCCCeEEEEEc
Q 013310 317 FQKGSSHMAAVVK 329 (445)
Q Consensus 317 m~~~~~~~a~Vvd 329 (445)
|.+++.+.+||+|
T Consensus 81 ~~~~~~~~~~Vv~ 93 (110)
T cd04605 81 MERHNISALPVVD 93 (110)
T ss_pred HHHhCCCEEeEEC
Confidence 9999999999998
No 23
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.40 E-value=7.9e-13 Score=114.42 Aligned_cols=99 Identities=20% Similarity=0.278 Sum_probs=82.7
Q ss_pred cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC-----CCccccccc
Q 013310 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-----ETPVSAVSI 298 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~-----~~~v~~im~ 298 (445)
..++++.+|+. +++++.++++++ ++++.|.++|+|.+||+++ |+++|-++..++.+...++ +..++++|-
T Consensus 63 ~~ita~~iM~s--pvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~ 137 (187)
T COG3620 63 TRITAKTIMHS--PVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALLEGMESIRSLRVREVMG 137 (187)
T ss_pred ceEeHhhhccC--CeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecHHHHHHHHhccccchhhhhHHHHhc
Confidence 34688999984 799999999999 9999999999999999986 7999999999998875432 367899999
Q ss_pred cCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 299 ~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
.++++|++++++...-+.+..+ +.+.|++
T Consensus 138 e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e 166 (187)
T COG3620 138 EPFPTVSPDESLNVISQLLEEH--PAVLVVE 166 (187)
T ss_pred CCCCcCCCCCCHHHHHHHHhhC--CeEEEEe
Confidence 9999999999997776666554 4455554
No 24
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.39 E-value=2.8e-12 Score=107.76 Aligned_cols=90 Identities=20% Similarity=0.213 Sum_probs=79.3
Q ss_pred eEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC-----CCCCccccccccCCceeCCCCCHHH
Q 013310 238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-----ETETPVSAVSIRRIPRVPSDMPLYD 312 (445)
Q Consensus 238 vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~-----~~~~~v~~im~~~~~~V~~~~~l~~ 312 (445)
+.++++++++. ++++.|.++++..+||++++ ++++|+++.+|+.+... ....++.++|.+++.++++++++.+
T Consensus 3 ~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 80 (114)
T cd04619 3 LAKIDVNATLQ-RAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHD 80 (114)
T ss_pred eEEECCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHH
Confidence 56788999998 99999999999999999865 78999999999886432 1235788888888999999999999
Q ss_pred HHHHHhhCCCeEEEEEc
Q 013310 313 ILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 313 al~~m~~~~~~~a~Vvd 329 (445)
+++.|.+++.+.+||+|
T Consensus 81 a~~~m~~~~~~~lpVvd 97 (114)
T cd04619 81 VWQVMKQRGLKNIPVVD 97 (114)
T ss_pred HHHHHHHcCCCeEEEEC
Confidence 99999999999999999
No 25
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=3.6e-12 Score=106.87 Aligned_cols=92 Identities=16% Similarity=0.215 Sum_probs=79.1
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC-----CCCCccccccccCCceeCCCCCHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-----ETETPVSAVSIRRIPRVPSDMPLY 311 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~-----~~~~~v~~im~~~~~~V~~~~~l~ 311 (445)
++.+++++.++. ++++.|.+++++.+||++++.++++|+++.+|+++... ....++.++|.++++++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 80 (114)
T cd04630 2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIK 80 (114)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHH
Confidence 567899999998 99999999999999999864368999999999986321 122568888888889999999999
Q ss_pred HHHHHHhhCCCeEEEEEc
Q 013310 312 DILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 312 ~al~~m~~~~~~~a~Vvd 329 (445)
++++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~~~~~~~~~Vvd 98 (114)
T cd04630 81 YCARLMERTNIRRAPVVE 98 (114)
T ss_pred HHHHHHHHcCCCEeeEee
Confidence 999999999999999998
No 26
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.38 E-value=1.3e-12 Score=130.45 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=89.2
Q ss_pred ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC---CCCccccccccCC
Q 013310 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRI 301 (445)
Q Consensus 225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~---~~~~v~~im~~~~ 301 (445)
..+|+++|.+..+++++++++++. ++.+.|.+++.+.+||++++ ++++|+|+.+|+.+.... .+.++.++|.+++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence 468999998632388999999998 99999999999999999875 799999999998754321 2356889998999
Q ss_pred ceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 302 PRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 302 ~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
.++++++++.++++.|.+++...+||+|
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd 301 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVD 301 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 9999999999999999999999999999
No 27
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=3.9e-12 Score=105.80 Aligned_cols=91 Identities=15% Similarity=0.243 Sum_probs=79.1
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC-----CCccccccccCCceeCCCCCHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-----ETPVSAVSIRRIPRVPSDMPLY 311 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~-----~~~v~~im~~~~~~V~~~~~l~ 311 (445)
++.+++.+.++. ++++.+.+++++++||++++ ++++|+++.+|+++..... ..++.++|.+++.++++++++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 79 (113)
T cd04623 2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVD 79 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHH
Confidence 466789999998 99999999999999999875 7999999999998643321 3468888878889999999999
Q ss_pred HHHHHHhhCCCeEEEEEc
Q 013310 312 DILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 312 ~al~~m~~~~~~~a~Vvd 329 (445)
++++.|.+++.+.+||+|
T Consensus 80 ~~l~~~~~~~~~~~~Vv~ 97 (113)
T cd04623 80 EAMALMTERRFRHLPVVD 97 (113)
T ss_pred HHHHHHHHcCCCEeEEEe
Confidence 999999999999999998
No 28
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=3.8e-12 Score=108.01 Aligned_cols=91 Identities=19% Similarity=0.370 Sum_probs=79.4
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC--------------CCccccccccCCc
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--------------ETPVSAVSIRRIP 302 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~--------------~~~v~~im~~~~~ 302 (445)
++.+++.+.++. ++.+.|.+++++++||++++ ++++|+++.+|++...... ..++.++|.+++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (124)
T cd04600 3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV 80 (124)
T ss_pred CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence 567889999998 99999999999999999875 7899999999997643321 2367888888899
Q ss_pred eeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 303 RVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 303 ~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
++++++++.++++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~ 107 (124)
T cd04600 81 TVRPDTPIAELVPLLADGGHHHVPVVD 107 (124)
T ss_pred eeCCCCcHHHHHHHHHhcCCCceeEEc
Confidence 999999999999999999999999999
No 29
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=2.8e-12 Score=106.77 Aligned_cols=91 Identities=14% Similarity=0.203 Sum_probs=79.3
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC---CCccccccccCCceeCCCCCHHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET---ETPVSAVSIRRIPRVPSDMPLYDI 313 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~---~~~v~~im~~~~~~V~~~~~l~~a 313 (445)
++..++.+.+++ ++++.+.+++++++||++++ ++++|+++.+|+....... +.++.++|.+++.++++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04626 2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEA 79 (111)
T ss_pred CceEECCCccHH-HHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHH
Confidence 466789999998 99999999999999999865 7899999999998653321 346788888888999999999999
Q ss_pred HHHHhhCCCeEEEEEc
Q 013310 314 LNEFQKGSSHMAAVVK 329 (445)
Q Consensus 314 l~~m~~~~~~~a~Vvd 329 (445)
++.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~Vv~ 95 (111)
T cd04626 80 LDIMREKQIGRLPVVD 95 (111)
T ss_pred HHHHHHcCCCeeeEeE
Confidence 9999999999999998
No 30
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.37 E-value=1.1e-12 Score=128.10 Aligned_cols=166 Identities=18% Similarity=0.228 Sum_probs=130.5
Q ss_pred HHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccc--cCCceeCCCCCHHHHHHHHhhCCCeEEEE
Q 013310 250 EAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAV 327 (445)
Q Consensus 250 e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~--~~~~~V~~~~~l~~al~~m~~~~~~~a~V 327 (445)
|.++.+....++..|++..+.+.+.|++..++ .+|+|+|+ ..+..++.+++..+..+++.+......||
T Consensus 168 EElR~~v~~~~~e~~~~~~~rdmL~gvLDLe~---------~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRipl 238 (423)
T COG4536 168 EELRTAVNESGSEGSVNKIDRDMLLGVLDLEN---------LTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPL 238 (423)
T ss_pred HHHHHHHHHhhcccccccccHHHHhccccccc---------ceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceee
Confidence 66888888888999998756678889988765 56889986 45667999999999999999876666666
Q ss_pred E-ccCCCccCCCCCCCCCcccccccCCCCCCCCcccccccccCCCceEeeccCCCccccccccCCCCCCCCCcccccccc
Q 013310 328 V-KAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYAS 406 (445)
Q Consensus 328 v-de~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~ 406 (445)
. |.-++++|++ ..+|+++.....-.+.. .-....-.++|.||+..++.+-...|..+..+-+.++|
T Consensus 239 yr~~~DnIiGvl--h~r~llr~l~e~~~~~k-----~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVD------ 305 (423)
T COG4536 239 YRDDLDNIIGVL--HVRDLLRLLNEKNEFTK-----EDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVD------ 305 (423)
T ss_pred ecCChhHhhhhh--hHHHHHHHhhccCcccH-----hHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEe------
Confidence 4 6667799999 77777766643321111 01123346789999999999988999998888888889
Q ss_pred CCCCCCceEEEeehhhHHHHHhcCccCCCCccccc
Q 013310 407 EDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVD 441 (445)
Q Consensus 407 ~~~e~g~l~GIVT~~Dile~l~g~ei~de~d~~~~ 441 (445)
|||.+.|+||.|||+||++| |+.||+|...+
T Consensus 306 ---EYG~i~GLVTLEDIlEEIVG-dftde~d~~~~ 336 (423)
T COG4536 306 ---EYGDIQGLVTLEDILEEIVG-DFTDEHDTLAK 336 (423)
T ss_pred ---ccCcEEeeeeHHHHHHHHhc-cccccCcccch
Confidence 99999999999999999998 99999885443
No 31
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=4.3e-12 Score=105.33 Aligned_cols=89 Identities=18% Similarity=0.218 Sum_probs=79.4
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~ 316 (445)
++.+++++++++ ++.+.+.+++++++||++++ ++++|+++.+|++... .+.++.++|..++.++++++++.++++.
T Consensus 3 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~v~~~~~l~~~~~~ 78 (108)
T cd04596 3 DTGYLTTTDTVK-DWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKD--PDTTIEKVMTKNPITVNPKTSVASVAHM 78 (108)
T ss_pred ccEEeCCCCCHH-HHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhccc--ccccHHHHhcCCCeEECCCCCHHHHHHH
Confidence 577889999998 99999999999999999864 7899999999998642 2457888888888999999999999999
Q ss_pred HhhCCCeEEEEEc
Q 013310 317 FQKGSSHMAAVVK 329 (445)
Q Consensus 317 m~~~~~~~a~Vvd 329 (445)
|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~Vv~ 91 (108)
T cd04596 79 MIWEGIEMLPVVD 91 (108)
T ss_pred HHHcCCCeeeEEc
Confidence 9999999999999
No 32
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.37 E-value=3.6e-12 Score=106.02 Aligned_cols=91 Identities=42% Similarity=0.631 Sum_probs=77.3
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCC--CccccccccCCceeCCCCCHHHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE--TPVSAVSIRRIPRVPSDMPLYDIL 314 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~--~~v~~im~~~~~~V~~~~~l~~al 314 (445)
++++++.+.++. ++++.|.+.+++.+||++++.++++|+++.+|+.+....+. .++.++ ++++.++++++++.+++
T Consensus 2 ~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l~~~~ 79 (111)
T cd04590 2 DIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTPLDDLL 79 (111)
T ss_pred ceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCcHHHHH
Confidence 577899999998 99999999999999999864368999999999987543222 345654 56788999999999999
Q ss_pred HHHhhCCCeEEEEEc
Q 013310 315 NEFQKGSSHMAAVVK 329 (445)
Q Consensus 315 ~~m~~~~~~~a~Vvd 329 (445)
+.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~Vv~ 94 (111)
T cd04590 80 EEMRKERSHMAIVVD 94 (111)
T ss_pred HHHHhcCCcEEEEEE
Confidence 999999999999999
No 33
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=6.5e-12 Score=107.42 Aligned_cols=91 Identities=16% Similarity=0.236 Sum_probs=76.2
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCC----c-------------ccccccc
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET----P-------------VSAVSIR 299 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~----~-------------v~~im~~ 299 (445)
++++++++.++. ++++.|.+++++.+||++++ ++++|+++.+|+++...++.. + ..+.|.+
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T cd04642 2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR 79 (126)
T ss_pred CeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence 567899999998 99999999999999999875 899999999999875432111 0 1234567
Q ss_pred CCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 300 ~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
++.++++++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd 109 (126)
T cd04642 80 PLITCTPSSTLKEVITKLVANKVHRVWVVD 109 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHhCCcEEEEEC
Confidence 788999999999999999999999999999
No 34
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.35 E-value=6e-12 Score=105.58 Aligned_cols=90 Identities=20% Similarity=0.298 Sum_probs=78.1
Q ss_pred eEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC----CCccccccccCCceeCCCCCHHHH
Q 013310 238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----ETPVSAVSIRRIPRVPSDMPLYDI 313 (445)
Q Consensus 238 vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~----~~~v~~im~~~~~~V~~~~~l~~a 313 (445)
+..+++++++. ++.+.|.+.+++++||++++ ++++|+++.+|+.....+. ..++.++|.++++++++++++.++
T Consensus 3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~ 80 (115)
T cd04593 3 PPVLSATTPLR-EAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAHA 80 (115)
T ss_pred CcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHHH
Confidence 45788999998 99999999999999999875 7999999999998653321 234778888889999999999999
Q ss_pred HHHHhhCCCeEEEEEc
Q 013310 314 LNEFQKGSSHMAAVVK 329 (445)
Q Consensus 314 l~~m~~~~~~~a~Vvd 329 (445)
++.|.+++.+.+||+|
T Consensus 81 l~~~~~~~~~~~~Vvd 96 (115)
T cd04593 81 LDRMASRGLRQLPVVD 96 (115)
T ss_pred HHHHHHcCCceeeEEe
Confidence 9999999999999998
No 35
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=7.1e-12 Score=104.37 Aligned_cols=91 Identities=20% Similarity=0.305 Sum_probs=78.7
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC---CCCccccccccCCceeCCCCCHHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIPRVPSDMPLYDI 313 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~---~~~~v~~im~~~~~~V~~~~~l~~a 313 (445)
++..++.+.++. ++.+.|.+.+++++||++++ ++++|+++.+|+++.... ...++.++|.++++.+++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 79 (112)
T cd04624 2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEA 79 (112)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHH
Confidence 356788999998 99999999999999999875 799999999999765332 2256778888888999999999999
Q ss_pred HHHHhhCCCeEEEEEc
Q 013310 314 LNEFQKGSSHMAAVVK 329 (445)
Q Consensus 314 l~~m~~~~~~~a~Vvd 329 (445)
++.|.+++...+||+|
T Consensus 80 ~~~~~~~~~~~~~Vv~ 95 (112)
T cd04624 80 AKLMRKNNIRHHLVVD 95 (112)
T ss_pred HHHHHHcCccEEEEEc
Confidence 9999999999999998
No 36
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=5.6e-12 Score=107.17 Aligned_cols=92 Identities=16% Similarity=0.276 Sum_probs=79.1
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC---------------CCccccccccCC
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET---------------ETPVSAVSIRRI 301 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~---------------~~~v~~im~~~~ 301 (445)
++.+++++.++. ++++.+.+++++.+||++++.++++|+++.+|++....+. ..++.++|.+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 466789999998 9999999999999999987447899999999998643321 236778887889
Q ss_pred ceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 302 PRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 302 ~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
+++++++++.++++.|.+.+.+.+||+|
T Consensus 81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~ 108 (125)
T cd04631 81 ITITPDDSIKDAAELMLEKRVGGLPVVD 108 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEc
Confidence 9999999999999999999999999998
No 37
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.34 E-value=6.3e-12 Score=131.04 Aligned_cols=118 Identities=15% Similarity=0.192 Sum_probs=99.9
Q ss_pred cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCce
Q 013310 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPR 303 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~ 303 (445)
+..+++++|++ +++++++++++. ++++.|.+++++.+||+|++ ++++|+|+.+|+.... ...++.++|.+++++
T Consensus 87 ~~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~~--~~~~V~diMt~~~it 160 (479)
T PRK07807 87 AWVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGVD--RFTQVRDVMSTDLVT 160 (479)
T ss_pred hhccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcCc--cCCCHHHhccCCceE
Confidence 35678899975 688999999998 99999999999999999864 7899999999986542 236799999999999
Q ss_pred eCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCccccc
Q 013310 304 VPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLN 349 (445)
Q Consensus 304 V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i 349 (445)
+++++++.++++.|.+++.+.+||+|+.|.++|+| |.+||++..
T Consensus 161 V~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGII--T~~DIl~~~ 204 (479)
T PRK07807 161 LPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVL--TRTGALRAT 204 (479)
T ss_pred ECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEE--EHHHHHHHh
Confidence 99999999999999999999999999666666666 666665443
No 38
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=6e-12 Score=104.64 Aligned_cols=91 Identities=29% Similarity=0.451 Sum_probs=79.0
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC--CCCccccccccCCceeCCCCCHHHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--TETPVSAVSIRRIPRVPSDMPLYDIL 314 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~--~~~~v~~im~~~~~~V~~~~~l~~al 314 (445)
++.+++.++++. ++++.+.+.+++++||++++ ++++|+++.+|+.+.... .+.++.++|.++++++++++++.+++
T Consensus 2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 79 (111)
T cd04639 2 HFETLSPADTLD-DAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVL 79 (111)
T ss_pred CceEcCCCCcHH-HHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHH
Confidence 456788999998 99999988899999999865 789999999999864322 23578888888999999999999999
Q ss_pred HHHhhCCCeEEEEEc
Q 013310 315 NEFQKGSSHMAAVVK 329 (445)
Q Consensus 315 ~~m~~~~~~~a~Vvd 329 (445)
+.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~Vv~ 94 (111)
T cd04639 80 RLMQQGGAPAVPVVD 94 (111)
T ss_pred HHHHhcCCceeeEEc
Confidence 999999999999998
No 39
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.33 E-value=4.5e-12 Score=136.29 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=89.6
Q ss_pred CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----CCCccccccc
Q 013310 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSI 298 (445)
Q Consensus 223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~im~ 298 (445)
++..+|+|+|++ +..++++++++. |+.+.+.+++++.+||+|++ ++++|+++.+|+.+...+ ++.++.++|.
T Consensus 444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~ 519 (574)
T PRK01862 444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDTTDKTAADYAH 519 (574)
T ss_pred HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence 566799999986 467899999998 99999999999999999875 789999999999874211 2356889998
Q ss_pred cCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 299 ~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
+++.++++++++.++++.|.+++.+.+||+|
T Consensus 520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd 550 (574)
T PRK01862 520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVE 550 (574)
T ss_pred CCCeeECCCCCHHHHHHHHHhcCCCeeeeEe
Confidence 8899999999999999999999999999998
No 40
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=8e-12 Score=106.30 Aligned_cols=92 Identities=21% Similarity=0.252 Sum_probs=75.2
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC--C-----------CccccccccCCce
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--E-----------TPVSAVSIRRIPR 303 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~--~-----------~~v~~im~~~~~~ 303 (445)
++.+++.++++. ++++.|.+++++++||++++.++++|+++.+|+++....+ . ..+.++|..++.+
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (123)
T cd04627 2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS 80 (123)
T ss_pred CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence 366789999998 9999999999999999986436899999999987642211 0 1112356778889
Q ss_pred eCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 304 VPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 304 V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
+++++++.++++.|.+++.+.+||+|
T Consensus 81 v~~~~~l~~a~~~m~~~~~~~lpVvd 106 (123)
T cd04627 81 INGDQPLIDALHLMHNEGISSVAVVD 106 (123)
T ss_pred eCCCCCHHHHHHHHHHcCCceEEEEC
Confidence 99999999999999999999999999
No 41
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=1.1e-11 Score=103.85 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=75.9
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC---------CCccccccccCCceeCCC
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET---------ETPVSAVSIRRIPRVPSD 307 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~---------~~~v~~im~~~~~~V~~~ 307 (445)
++++++.++++. ++++.|.+++++.+||++++ ++++|+++.+|+++..... +.++.++|..++.+++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~ 79 (116)
T cd04643 2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD 79 (116)
T ss_pred CcEEECCCCcHH-HHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCC
Confidence 577899999998 99999999999999999864 7899999999998754321 346788888889999999
Q ss_pred CCHHHHHHHHhhCCCeEEEEEc
Q 013310 308 MPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 308 ~~l~~al~~m~~~~~~~a~Vvd 329 (445)
+++.++++.|.+.+ .+||+|
T Consensus 80 ~~l~~a~~~~~~~~--~~~Vv~ 99 (116)
T cd04643 80 ADIEEILHLLIDQP--FLPVVD 99 (116)
T ss_pred CCHHHHHHHHhcCC--ceeEEe
Confidence 99999999998764 589998
No 42
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.32 E-value=1.6e-11 Score=101.12 Aligned_cols=88 Identities=11% Similarity=0.088 Sum_probs=76.6
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~ 316 (445)
++.+++++.++. ++++.|.+++++.+||++++ ++++|+++.+|+.+... .++.++|.+++..+++++++.++++.
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (106)
T cd04582 2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG---GCCGDHAEPFKVTVSVDDDLRIVLSR 76 (106)
T ss_pred CCcEecCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc---cchhhhcccCCEEECCCCCHHHHHHH
Confidence 466788999998 99999999999999999864 79999999999987532 34778877777789999999999999
Q ss_pred HhhCCCeEEEEEc
Q 013310 317 FQKGSSHMAAVVK 329 (445)
Q Consensus 317 m~~~~~~~a~Vvd 329 (445)
|.+++.+.+||+|
T Consensus 77 ~~~~~~~~~~Vv~ 89 (106)
T cd04582 77 MFAHDMSWLPCVD 89 (106)
T ss_pred HHHCCCCeeeEEC
Confidence 9999999999999
No 43
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=9e-12 Score=105.27 Aligned_cols=92 Identities=14% Similarity=0.246 Sum_probs=78.0
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----CCCcccccccc--CCceeCCCCCH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIR--RIPRVPSDMPL 310 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~im~~--~~~~V~~~~~l 310 (445)
++.+++++.++. ++++.|.+++.+.+||++++ ++++|+++.+|+.+.... ...++.++|.+ +++++++++++
T Consensus 2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l 79 (118)
T cd04617 2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESV 79 (118)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcH
Confidence 456889999998 99999999999999999865 789999999998875421 13456777764 67899999999
Q ss_pred HHHHHHHhhCCCeEEEEEcc
Q 013310 311 YDILNEFQKGSSHMAAVVKA 330 (445)
Q Consensus 311 ~~al~~m~~~~~~~a~Vvde 330 (445)
.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~~lpVvd~ 99 (118)
T cd04617 80 LEAAKKLIEHQVDSLPVVEK 99 (118)
T ss_pred HHHHHHHHHcCCCEeeEEeC
Confidence 99999999999999999983
No 44
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.31 E-value=1.1e-11 Score=107.94 Aligned_cols=91 Identities=15% Similarity=0.151 Sum_probs=79.1
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC---------------------------
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--------------------------- 289 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~--------------------------- 289 (445)
+++++++++++. ++++.|.+++++.+||++++ ++++|+++.+|+++.....
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (135)
T cd04621 2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV 79 (135)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence 466789999998 99999999999999999865 8999999999998754211
Q ss_pred CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 290 ~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
+.++.++|..++.++++++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~ 119 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD 119 (135)
T ss_pred cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 2468888888888999999999999999999999999998
No 45
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.31 E-value=1.9e-11 Score=125.67 Aligned_cols=116 Identities=22% Similarity=0.259 Sum_probs=103.5
Q ss_pred CCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcC-----CcEEEeEeCCCCCEEEEEEhhhh
Q 013310 208 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG-----HSRVPVYSGNPKNIIGLLLVKSL 282 (445)
Q Consensus 208 ~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~-----~s~~PV~~~~~~~ivGiv~~kDl 282 (445)
.+++++++.++..+.+.+.+++.+|+. ++++++.+.|+. ++++++++.+ ...+.|+|++ ++++|+++.+++
T Consensus 114 ~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~L 189 (451)
T COG2239 114 LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDL 189 (451)
T ss_pred hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHH
Confidence 578999999999999999999999995 899999999998 9999998544 3456677765 689999999999
Q ss_pred hccCCCCCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 283 LTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 283 l~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
+... ++.+++++|.+.+++|+++++.+++.+.|++++.-.+||||
T Consensus 190 l~a~--~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd 234 (451)
T COG2239 190 LTAE--PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD 234 (451)
T ss_pred hcCC--cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceEC
Confidence 9753 35789999988899999999999999999999999999999
No 46
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=1.4e-11 Score=104.31 Aligned_cols=91 Identities=21% Similarity=0.311 Sum_probs=78.9
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC-------------CCCccccccccCCce
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-------------TETPVSAVSIRRIPR 303 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~-------------~~~~v~~im~~~~~~ 303 (445)
++.++++++++. ++.+.|.+.+++++||++++ ++++|+++.+|+++.... ...++.++|.+++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (122)
T cd04803 2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLT 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeE
Confidence 456789999998 99999999999999999865 799999999999865321 235677888788899
Q ss_pred eCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 304 VPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 304 V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
+++++++.++++.|++++.+.+||+|
T Consensus 80 v~~~~~~~~~~~~~~~~~~~~~~Vv~ 105 (122)
T cd04803 80 VTPDTPLREAAEIMVENKIGCLPVVD 105 (122)
T ss_pred eCCCCcHHHHHHHHHHcCCCeEEEEc
Confidence 99999999999999999999999998
No 47
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.31 E-value=1.7e-11 Score=101.65 Aligned_cols=90 Identities=22% Similarity=0.331 Sum_probs=78.7
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC---CCCccccccccCCceeCCCCCHHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIPRVPSDMPLYDI 313 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~---~~~~v~~im~~~~~~V~~~~~l~~a 313 (445)
++.+++++.++. ++++.|.+++++.+||+++ ++++|+++.+|+.+.... ...++.++|.++++++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 78 (111)
T cd04611 2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDA 78 (111)
T ss_pred CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHH
Confidence 466789999998 9999999999999999986 789999999999865422 2357888888888999999999999
Q ss_pred HHHHhhCCCeEEEEEc
Q 013310 314 LNEFQKGSSHMAAVVK 329 (445)
Q Consensus 314 l~~m~~~~~~~a~Vvd 329 (445)
++.|.+.+.+.+||+|
T Consensus 79 l~~~~~~~~~~~~Vv~ 94 (111)
T cd04611 79 RQLMREHGIRHLVVVD 94 (111)
T ss_pred HHHHHHcCCeEEEEEC
Confidence 9999999999999999
No 48
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.31 E-value=1.8e-11 Score=101.23 Aligned_cols=90 Identities=17% Similarity=0.273 Sum_probs=78.8
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~ 316 (445)
++..++++.++. ++++.|.++++.++||++++ ++++|+++.+|+..... ...++.++|..++.++++++++.++++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~~~~ 79 (109)
T cd04583 3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYK-EAKSLEDIMLEDVFTVQPDASLRDVLGL 79 (109)
T ss_pred CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhh-cCCcHhHhhcCCceEECCCCcHHHHHHH
Confidence 456789999998 99999999999999999875 78999999999986532 2356888888888999999999999999
Q ss_pred HhhCCCeEEEEEc
Q 013310 317 FQKGSSHMAAVVK 329 (445)
Q Consensus 317 m~~~~~~~a~Vvd 329 (445)
|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~vv~ 92 (109)
T cd04583 80 VLKRGPKYVPVVD 92 (109)
T ss_pred HHHcCCceeeEEC
Confidence 9999999999999
No 49
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.31 E-value=1.2e-11 Score=102.95 Aligned_cols=91 Identities=15% Similarity=0.247 Sum_probs=79.4
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC----CCccccccccCCceeCCCCCHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----ETPVSAVSIRRIPRVPSDMPLYD 312 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~----~~~v~~im~~~~~~V~~~~~l~~ 312 (445)
++++++++.++. ++++.|.+.+++++||++++ ++++|+++.+|+.+...+. ..++.++|.+++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 79 (114)
T cd04613 2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLED 79 (114)
T ss_pred CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHH
Confidence 466789999998 99999999999999999875 7899999999998643221 25688888888999999999999
Q ss_pred HHHHHhhCCCeEEEEEc
Q 013310 313 ILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 313 al~~m~~~~~~~a~Vvd 329 (445)
+++.|++.+.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~~Vv~ 96 (114)
T cd04613 80 ALKKFEDSDYEQLPVVD 96 (114)
T ss_pred HHHHHhhCCccEeeEEe
Confidence 99999999999999998
No 50
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.30 E-value=6.3e-12 Score=105.25 Aligned_cols=107 Identities=18% Similarity=0.227 Sum_probs=90.0
Q ss_pred ceEEeeCCCCccHHHHHHHHHcC-CcEEEeEeCCCCCEEEEEEhhhhhccCCCC--CCcccccccc--CCceeCCCCCHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARG-HSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIR--RIPRVPSDMPLY 311 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~-~s~~PV~~~~~~~ivGiv~~kDll~~~~~~--~~~v~~im~~--~~~~V~~~~~l~ 311 (445)
++.+++++.++. ++++.|.+++ ++.+||++++ ++++|+++.+|++...... +.++.++|.. +++.+++++++.
T Consensus 2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04801 2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLA 79 (114)
T ss_pred CcceeCCCCCHH-HHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHH
Confidence 466789999998 9999887665 8899999864 7899999999998754321 3567888743 356899999999
Q ss_pred HHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCccc
Q 013310 312 DILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK 347 (445)
Q Consensus 312 ~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~ 347 (445)
++++.|++++.+.+||+|++|.++|++ |.+|+++
T Consensus 80 ~a~~~~~~~~~~~l~Vv~~~~~~~Gvl--~~~di~~ 113 (114)
T cd04801 80 EVLKLLEEQGLDELAVVEDSGQVIGLI--TEADLLR 113 (114)
T ss_pred HHHHHHHHCCCCeeEEEcCCCcEEEEE--eccceec
Confidence 999999999999999999999999999 8888864
No 51
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.30 E-value=7.1e-12 Score=107.40 Aligned_cols=81 Identities=19% Similarity=0.309 Sum_probs=69.5
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC----CCCCCccccccccCCceeCCCCCHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR----PETETPVSAVSIRRIPRVPSDMPLYD 312 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~----~~~~~~v~~im~~~~~~V~~~~~l~~ 312 (445)
++.+++++.++. ++++.|.+++++.+||++++ ++++|+++.+|++... ...+.++.++|.+++.++++++++.+
T Consensus 3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~ 80 (124)
T cd04608 3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK 80 (124)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHH
Confidence 567899999998 99999999999999999865 7899999999998532 12347899999999999999999999
Q ss_pred HHHHHhh
Q 013310 313 ILNEFQK 319 (445)
Q Consensus 313 al~~m~~ 319 (445)
+.+.|..
T Consensus 81 v~~~~~~ 87 (124)
T cd04608 81 LSRILET 87 (124)
T ss_pred HHhhccc
Confidence 9997653
No 52
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=1.5e-11 Score=106.12 Aligned_cols=91 Identities=16% Similarity=0.256 Sum_probs=78.1
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC----C--------------------Cc
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----E--------------------TP 292 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~----~--------------------~~ 292 (445)
++.++++++++. ++++.+.+.+++++||++++ ++++|+++.+|+++..... . .+
T Consensus 2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (132)
T cd04636 2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK 79 (132)
T ss_pred CCeEeCCCCcHH-HHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence 456789999998 99999999999999999875 7999999999997643221 1 16
Q ss_pred cccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 293 v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
+.++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus 80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~ 116 (132)
T cd04636 80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD 116 (132)
T ss_pred HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE
Confidence 7788888889999999999999999999999999999
No 53
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.29 E-value=2.2e-11 Score=101.07 Aligned_cols=90 Identities=18% Similarity=0.249 Sum_probs=78.3
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC--CCccccccccCCceeCCCCCHHHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIRRIPRVPSDMPLYDIL 314 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~--~~~v~~im~~~~~~V~~~~~l~~al 314 (445)
+++.++.++++. ++++.|.+.+++++||+++ ++++|+++.+|+++....+ ..++.++|.+++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 78 (110)
T cd04588 2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAI 78 (110)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHH
Confidence 466788999998 9999999999999999986 7899999999998754332 2467788778889999999999999
Q ss_pred HHHhhCCCeEEEEEc
Q 013310 315 NEFQKGSSHMAAVVK 329 (445)
Q Consensus 315 ~~m~~~~~~~a~Vvd 329 (445)
+.|.+.+.+.+||+|
T Consensus 79 ~~~~~~~~~~~~V~~ 93 (110)
T cd04588 79 RLMNKHNVGRLIVTD 93 (110)
T ss_pred HHHHhcCCCEEEEEC
Confidence 999999999999998
No 54
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=2.3e-11 Score=101.71 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=77.2
Q ss_pred eEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC---CCCccccccccCCceeCCCCCHHHHH
Q 013310 238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIPRVPSDMPLYDIL 314 (445)
Q Consensus 238 vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~---~~~~v~~im~~~~~~V~~~~~l~~al 314 (445)
.++++.+.++. ++++.|.+.+++.+||++++ ++++|+++.+|+.+.... ...++.++|..++.++++++++.+++
T Consensus 4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04607 4 QLLVSPDASIL-DALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEIL 81 (113)
T ss_pred ceEECCCCCHH-HHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHH
Confidence 45688999998 99999998899999999865 789999999998754321 23568888877888999999999999
Q ss_pred HHHhhCCCeEEEEEc
Q 013310 315 NEFQKGSSHMAAVVK 329 (445)
Q Consensus 315 ~~m~~~~~~~a~Vvd 329 (445)
+.|.+++.+.+||+|
T Consensus 82 ~~~~~~~~~~~~Vv~ 96 (113)
T cd04607 82 ALMRERSIRHLPILD 96 (113)
T ss_pred HHHHHCCCCEEEEEC
Confidence 999999999999999
No 55
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=1.8e-11 Score=103.50 Aligned_cols=91 Identities=12% Similarity=0.223 Sum_probs=78.0
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC-------------CCCCccccccccCCce
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-------------ETETPVSAVSIRRIPR 303 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~-------------~~~~~v~~im~~~~~~ 303 (445)
++.+++++.++. ++++.|.+++++++||++++ ++++|+++.+|+++... ....++.++|.+++..
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd04635 2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYS 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCee
Confidence 467889999998 99999999999999999864 89999999999976321 1234577788788889
Q ss_pred eCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 304 VPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 304 V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
+++++++.++++.|.+++.+.+||+|
T Consensus 80 v~~~~~l~~~~~~~~~~~~~~~~Vvd 105 (122)
T cd04635 80 VTPDDSIATAVELMLEHDIGRLPVVN 105 (122)
T ss_pred ECCCCCHHHHHHHHHHcCCCeeeEEc
Confidence 99999999999999999999999999
No 56
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.28 E-value=2.1e-13 Score=125.17 Aligned_cols=163 Identities=17% Similarity=0.191 Sum_probs=124.0
Q ss_pred HHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccc--cCCceeCCCCCHHHHHHHHhhCCCeEEEE
Q 013310 250 EAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAV 327 (445)
Q Consensus 250 e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~--~~~~~V~~~~~l~~al~~m~~~~~~~a~V 327 (445)
|.+..++......+.= .+..+.+-|++...| ..|+++|+ .+..+++.+.++.+.+..+.+...+..||
T Consensus 36 eLl~liRdse~n~LiD-~dt~~mlEGvm~iad---------l~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPV 105 (293)
T COG4535 36 ELLELIRDSEQNELID-ADTLDMLEGVMDIAD---------LRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPV 105 (293)
T ss_pred HHHHHHHHhhhccccC-hhHHHHHHHHHHHHH---------hhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCc
Confidence 6667777655444321 122244556666555 35778886 45678999999999999999987777777
Q ss_pred Ecc-CCCccCCCCCCCCCcccccccCCCCCCCCcccccccccCCCceEeeccCCCccccccccCCCCCCCCCcccccccc
Q 013310 328 VKA-KGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYAS 406 (445)
Q Consensus 328 vde-~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~ 406 (445)
+.| .+.+.||+ ..+|++.........= -+...-...++||++..+.-+.|.|..+..+|+++++
T Consensus 106 i~edkD~v~GIL--~AKDLL~~~~~~~~~F-------~i~~lLRPav~VPESKrvd~lLkeFR~~RnHMAIViD------ 170 (293)
T COG4535 106 ISEDKDHVEGIL--LAKDLLPFMRSDAEPF-------DIKELLRPAVVVPESKRVDRLLKEFRSQRNHMAIVID------ 170 (293)
T ss_pred ccCCchhhhhhh--hHHHHHHHhcCCcccc-------cHHHhcccceecccchhHHHHHHHHHhhcCceEEEEe------
Confidence 755 55699999 9999987655332210 0223344578899999999999999999999999999
Q ss_pred CCCCCCceEEEeehhhHHHHHhcCccCCCCccccc
Q 013310 407 EDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVD 441 (445)
Q Consensus 407 ~~~e~g~l~GIVT~~Dile~l~g~ei~de~d~~~~ 441 (445)
|+|++.|+||.+||+|.+|| +|.||+|++++
T Consensus 171 ---EfGgVsGLVTIEDiLEqIVG-dIEDE~Deee~ 201 (293)
T COG4535 171 ---EFGGVSGLVTIEDILEQIVG-DIEDEYDEEED 201 (293)
T ss_pred ---ccCCeeeeEEHHHHHHHHhc-ccccccchhhh
Confidence 99999999999999999998 99999997754
No 57
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=3.2e-11 Score=98.52 Aligned_cols=78 Identities=8% Similarity=0.175 Sum_probs=69.8
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~ 316 (445)
++++++++.++. ++++.|.+++++.+||++++ ++++|+++.+|+.... .+.++++++++.++++.
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~-------------~~~~v~~~~~l~~a~~~ 66 (96)
T cd04614 2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKS-------------EVVTATKRTTVSECAQK 66 (96)
T ss_pred CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCC-------------CcEEecCCCCHHHHHHH
Confidence 467889999998 99999999999999999865 7999999999998632 16789999999999999
Q ss_pred HhhCCCeEEEEEc
Q 013310 317 FQKGSSHMAAVVK 329 (445)
Q Consensus 317 m~~~~~~~a~Vvd 329 (445)
|.+++.+.+||+|
T Consensus 67 m~~~~~~~lpVv~ 79 (96)
T cd04614 67 MKRNRIEQIPIIN 79 (96)
T ss_pred HHHhCCCeeeEEC
Confidence 9999999999999
No 58
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.28 E-value=2.7e-11 Score=100.26 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=76.6
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCC-CCCHHHHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPS-DMPLYDILN 315 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~-~~~l~~al~ 315 (445)
++..++.+.++. ++++.+.+++++++||++++ ++++|+++.++++.... .+.++.++|..++.++.+ ++++.++++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 79 (110)
T cd04601 3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-LDKPVSEVMTPENLLTTVEGTSLEEALE 79 (110)
T ss_pred CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-CCCCHHHhcccCceEEecCCCCHHHHHH
Confidence 466788999998 99999999999999999875 78999999999875432 346788887666666666 999999999
Q ss_pred HHhhCCCeEEEEEc
Q 013310 316 EFQKGSSHMAAVVK 329 (445)
Q Consensus 316 ~m~~~~~~~a~Vvd 329 (445)
.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~Vv~ 93 (110)
T cd04601 80 LLHEHKIEKLPVVD 93 (110)
T ss_pred HHHHhCCCeeeEEc
Confidence 99999999999999
No 59
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=1.8e-11 Score=104.70 Aligned_cols=91 Identities=19% Similarity=0.310 Sum_probs=73.7
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC----------CCCCCccccccccCCce--e
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR----------PETETPVSAVSIRRIPR--V 304 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~----------~~~~~~v~~im~~~~~~--V 304 (445)
++.+++.++++. ++++.|.+++...+||++++ ++++|+++.+|+.... ...+.+++++|.++... +
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~ 79 (126)
T cd04640 2 KPIVIPADTSID-EALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKAL 79 (126)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccc
Confidence 356789999998 99999998898999999865 7899999999988521 11235688888655433 3
Q ss_pred ----CCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 305 ----PSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 305 ----~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
++++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~l~~~l~~m~~~~~~~lpVvd 108 (126)
T cd04640 80 DLEELENASVGDVVETLKASGRQHALVVD 108 (126)
T ss_pred cHHHhccCcHHHHHHHHHHCCCceEEEEE
Confidence 3689999999999999999999999
No 60
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.28 E-value=2.9e-11 Score=99.30 Aligned_cols=88 Identities=11% Similarity=0.243 Sum_probs=77.6
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~ 316 (445)
++.++++++++. ++++.|.+++++.+||+++ ++++|+++.+|+.+... ..++.++|..++.++++++++.++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~Giv~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 76 (105)
T cd04599 2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVED--GKLVGIITSRDVRRAHP--NRLVADAMTREVVTISPEASLLEAKRL 76 (105)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEehHHhhcccc--cCCHHHHccCCCEEECCCCCHHHHHHH
Confidence 456789999998 9999999999999999973 78999999999987532 356788888888899999999999999
Q ss_pred HhhCCCeEEEEEc
Q 013310 317 FQKGSSHMAAVVK 329 (445)
Q Consensus 317 m~~~~~~~a~Vvd 329 (445)
|.+++.+.+||+|
T Consensus 77 ~~~~~~~~~~Vv~ 89 (105)
T cd04599 77 MEEKKIERLPVLR 89 (105)
T ss_pred HHHcCCCEeeEEE
Confidence 9999999999998
No 61
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.28 E-value=2.9e-11 Score=100.24 Aligned_cols=90 Identities=20% Similarity=0.301 Sum_probs=78.0
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCC---CccccccccCCceeCCCCCHHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE---TPVSAVSIRRIPRVPSDMPLYDI 313 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~---~~v~~im~~~~~~V~~~~~l~~a 313 (445)
++..++++.++. ++++.|.+.+++++||+++ ++++|+++.+|+.+...... .++.++|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 78 (111)
T cd04612 2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDA 78 (111)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHH
Confidence 456789999998 9999999889999999986 78999999999987543321 15677788889999999999999
Q ss_pred HHHHhhCCCeEEEEEc
Q 013310 314 LNEFQKGSSHMAAVVK 329 (445)
Q Consensus 314 l~~m~~~~~~~a~Vvd 329 (445)
++.|++++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~V~~ 94 (111)
T cd04612 79 LKRMAERDIGRLPVVD 94 (111)
T ss_pred HHHHHhCCCCeeeEEc
Confidence 9999999999999998
No 62
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.28 E-value=1.6e-11 Score=128.78 Aligned_cols=108 Identities=14% Similarity=0.147 Sum_probs=94.7
Q ss_pred EEeeCCCCccHHHHHHHHHcCCcEEEeEeCC--CCCEEEEEEhhhhhccCCCCCCcccccccc--CCceeCCCCCHHHHH
Q 013310 239 FSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIR--RIPRVPSDMPLYDIL 314 (445)
Q Consensus 239 v~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~--~~~ivGiv~~kDll~~~~~~~~~v~~im~~--~~~~V~~~~~l~~al 314 (445)
.++++++++. ++++.|.+++++.+||++++ .++++|+|+.+|+.......+.+++++|.+ +++++++++++.+++
T Consensus 108 ~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl 186 (502)
T PRK07107 108 SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTKVKDFMTPFEKLVTANEGTTLKEAN 186 (502)
T ss_pred CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCCCHHHHhCCCCCeEEECCCCcHHHHH
Confidence 5789999998 99999999999999999862 478999999999975432345789999975 677899999999999
Q ss_pred HHHhhCCCeEEEEEccCCCccCCCCCCCCCccccc
Q 013310 315 NEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLN 349 (445)
Q Consensus 315 ~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i 349 (445)
+.|.+++.+.+||+|+.|.++|+| |.+|+++..
T Consensus 187 ~lM~e~~i~~LPVVD~~g~LvGII--T~~Dilk~~ 219 (502)
T PRK07107 187 DIIWDHKLNTLPIVDKNGNLVYLV--FRKDYDSHK 219 (502)
T ss_pred HHHHHcCCCEEEEEcCCCeEEEEE--EhHHHHhcc
Confidence 999999999999999999999999 999998643
No 63
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.27 E-value=4.5e-11 Score=98.52 Aligned_cols=88 Identities=15% Similarity=0.302 Sum_probs=77.2
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~ 316 (445)
++++++.+.++. ++++.|.+.+++++||+++ ++++|+++.+|++... ...++.++|..++.++++++++.++++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (107)
T cd04610 3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKD--PDETVEEIMSKDLVVAVPEMDIMDAARV 77 (107)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccC--ccccHHHhCCCCCeEECCCCCHHHHHHH
Confidence 567889999998 9999998888899999985 7899999999998642 2356888887888899999999999999
Q ss_pred HhhCCCeEEEEEc
Q 013310 317 FQKGSSHMAAVVK 329 (445)
Q Consensus 317 m~~~~~~~a~Vvd 329 (445)
|.+++.+.+||+|
T Consensus 78 ~~~~~~~~~~Vv~ 90 (107)
T cd04610 78 MFRTGISKLPVVD 90 (107)
T ss_pred HHHhCCCeEeEEC
Confidence 9999999999999
No 64
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.27 E-value=3.4e-11 Score=101.37 Aligned_cols=90 Identities=18% Similarity=0.245 Sum_probs=77.9
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC--------------CCccccccccCCc
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--------------ETPVSAVSIRRIP 302 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~--------------~~~v~~im~~~~~ 302 (445)
++.+++.+.++. ++++.|.+.+++.+||+++ ++++|+++.+|++...... ..++.++|.+++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04585 2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPI 78 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCe
Confidence 456789999998 9999999999999999986 7999999999998754221 2457778878889
Q ss_pred eeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 303 RVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 303 ~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
++++++++.++++.|.+++.+.+||+|
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~ 105 (122)
T cd04585 79 TVSPDASVEEAAELMLERKISGLPVVD 105 (122)
T ss_pred EeCCCCcHHHHHHHHHHcCCCceeEEC
Confidence 999999999999999999999999998
No 65
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.26 E-value=3.6e-11 Score=100.05 Aligned_cols=90 Identities=19% Similarity=0.264 Sum_probs=77.7
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----CCCccccccccCCceeCCCCCHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSDMPLYD 312 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~im~~~~~~V~~~~~l~~ 312 (445)
+++.++.+.++. ++++.|.+.+++.+||+++ ++++|+++.+|+...... ...++.++|..++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04589 2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFN 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHH
Confidence 356788999998 9999999999999999986 689999999998865321 235688888888899999999999
Q ss_pred HHHHHhhCCCeEEEEEc
Q 013310 313 ILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 313 al~~m~~~~~~~a~Vvd 329 (445)
+++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~Vv~ 95 (111)
T cd04589 79 ALLLMTRHRIHRVVVRE 95 (111)
T ss_pred HHHHHHHhCccEEEEee
Confidence 99999999999999998
No 66
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.26 E-value=3.6e-11 Score=100.28 Aligned_cols=90 Identities=13% Similarity=0.231 Sum_probs=77.4
Q ss_pred eEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----CCCccccccccCCceeCCCCCHHHH
Q 013310 238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSDMPLYDI 313 (445)
Q Consensus 238 vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~im~~~~~~V~~~~~l~~a 313 (445)
...+++++++. ++++.+.+++++++||++++ ++++|+++.+|+.+...+ ...++.++|..++.++++++++.++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~ 80 (113)
T cd04615 3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKA 80 (113)
T ss_pred CEEeeCCCcHH-HHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHH
Confidence 45678999998 99999999999999999864 789999999999864221 2356788888888999999999999
Q ss_pred HHHHhhCCCeEEEEEc
Q 013310 314 LNEFQKGSSHMAAVVK 329 (445)
Q Consensus 314 l~~m~~~~~~~a~Vvd 329 (445)
++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~~~~~~~Vvd 96 (113)
T cd04615 81 RWLMSNNNISRLPVLD 96 (113)
T ss_pred HHHHHHcCCCeeeEEC
Confidence 9999999999999998
No 67
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.26 E-value=4.6e-11 Score=98.54 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=74.8
Q ss_pred EeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHHHhh
Q 013310 240 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQK 319 (445)
Q Consensus 240 ~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~m~~ 319 (445)
+++++.++. ++++.+.+.+++++||+++ ++++|+++.+|+.+... .++.++|..++.+++++.++.++++.|.+
T Consensus 5 ~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~~~~~~~v~~~~~l~~a~~~~~~ 78 (104)
T cd04594 5 KVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYIVRGIPYVRLTSTAEEAWEVMMK 78 (104)
T ss_pred EECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhhhcCCcEEcCCCCHHHHHHHHHH
Confidence 578999998 9999999999999999985 78999999999986432 35677888888999999999999999999
Q ss_pred CCCeEEEEEc
Q 013310 320 GSSHMAAVVK 329 (445)
Q Consensus 320 ~~~~~a~Vvd 329 (445)
++.+.+||+|
T Consensus 79 ~~~~~~~Vv~ 88 (104)
T cd04594 79 NKTRWCPVVD 88 (104)
T ss_pred cCcceEEEEE
Confidence 9999999998
No 68
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.26 E-value=3.3e-11 Score=100.09 Aligned_cols=90 Identities=20% Similarity=0.354 Sum_probs=78.7
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC--CCCccccccccCCceeCCCCCHHHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--TETPVSAVSIRRIPRVPSDMPLYDIL 314 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~--~~~~v~~im~~~~~~V~~~~~l~~al 314 (445)
++.+++.+.++. ++.+.+.+.+++++||+++ ++++|+++.+|+.+.... ...++.++|.+++.++++++++.+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 79 (110)
T cd04595 3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQ 79 (110)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHH
Confidence 467889999998 9999999889999999986 789999999998764322 23678888888899999999999999
Q ss_pred HHHhhCCCeEEEEEc
Q 013310 315 NEFQKGSSHMAAVVK 329 (445)
Q Consensus 315 ~~m~~~~~~~a~Vvd 329 (445)
+.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~V~~ 94 (110)
T cd04595 80 ELMVEHDIGRVPVVE 94 (110)
T ss_pred HHHHHcCCCeeEEEe
Confidence 999999999999998
No 69
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.26 E-value=3.7e-11 Score=99.89 Aligned_cols=90 Identities=19% Similarity=0.253 Sum_probs=78.0
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----CCCccccccccCCceeCCCCCHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSDMPLYD 312 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~im~~~~~~V~~~~~l~~ 312 (445)
++.+++.+.++. ++.+.+.+++++++||+++ ++++|+++.+|+...... .+.++.++|.++++++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04800 2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFE 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHH
Confidence 467789999998 9999999989999999986 799999999998753211 235688888888999999999999
Q ss_pred HHHHHhhCCCeEEEEEc
Q 013310 313 ILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 313 al~~m~~~~~~~a~Vvd 329 (445)
+++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~Vv~ 95 (111)
T cd04800 79 ALLLMLERGIHHLPVVD 95 (111)
T ss_pred HHHHHHHcCCCeeeEeE
Confidence 99999999999999998
No 70
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=1.9e-11 Score=101.96 Aligned_cols=91 Identities=22% Similarity=0.270 Sum_probs=78.2
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC------CCCccccccccCCceeCCCCCH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE------TETPVSAVSIRRIPRVPSDMPL 310 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~------~~~~v~~im~~~~~~V~~~~~l 310 (445)
++.+++.+.++. ++++.|.+++++++||++++ ++++|+++.+|+++...+ ...++.++|..++.++++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l 79 (114)
T cd04629 2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSI 79 (114)
T ss_pred CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcH
Confidence 456789999998 99999998899999999865 789999999999864321 2356888888888899999999
Q ss_pred HHHHHHHhhCCCeEEEEEc
Q 013310 311 YDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 311 ~~al~~m~~~~~~~a~Vvd 329 (445)
.++++.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~~~~Vv~ 98 (114)
T cd04629 80 VDLAQLMLKAKPKRYPVVD 98 (114)
T ss_pred HHHHHHHHHhCCCccCEEE
Confidence 9999999999999999998
No 71
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=3.6e-11 Score=102.92 Aligned_cols=91 Identities=14% Similarity=0.276 Sum_probs=77.2
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC-----------------CCCcccccccc
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----------------TETPVSAVSIR 299 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~-----------------~~~~v~~im~~ 299 (445)
++..++++.++. ++++.|.+.+++.+||++++ ++++|+++.+|+...... .+.++.++|.+
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd04632 2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS 79 (128)
T ss_pred CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence 456788999998 99999999999999999875 789999999998743211 12467788888
Q ss_pred CCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 300 ~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
+++++++++++.++++.|.+++.+.+||++
T Consensus 80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~ 109 (128)
T cd04632 80 PVITASPNDSVRDAVDRMLENDDSSVVVVT 109 (128)
T ss_pred CCceECCCCcHHHHHHHHHhCCCCeEeEec
Confidence 899999999999999999999999999884
No 72
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.25 E-value=3.6e-11 Score=100.17 Aligned_cols=91 Identities=15% Similarity=0.205 Sum_probs=77.9
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----CCCccccccccCCceeCCCCCHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSDMPLYD 312 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~im~~~~~~V~~~~~l~~ 312 (445)
++.+++.+.++. ++++.+.+.+++++||++++ ++++|+++.+++.+.... ...++.++|..++.++++++++.+
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 80 (114)
T cd04604 3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE 80 (114)
T ss_pred cccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence 456788999998 99999988889999999875 789999999998765332 124688888888889999999999
Q ss_pred HHHHHhhCCCeEEEEEc
Q 013310 313 ILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 313 al~~m~~~~~~~a~Vvd 329 (445)
+++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~~~~~~~~Vv~ 97 (114)
T cd04604 81 ALELMEENKITALPVVD 97 (114)
T ss_pred HHHHHHHcCCCEEEEEC
Confidence 99999999999999998
No 73
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=2.5e-11 Score=105.11 Aligned_cols=91 Identities=20% Similarity=0.297 Sum_probs=78.5
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC--------------------------CCC
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP--------------------------ETE 290 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~--------------------------~~~ 290 (445)
++.+++++.++. ++++.|.++++.++||++++ ++++|+++.+|+.+... ...
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 567889999998 99999999999999999864 78999999999875321 123
Q ss_pred CccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 291 ~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
.++.++|..++.++++++++.++++.|.+++.+.+||+|
T Consensus 81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd 119 (135)
T cd04586 81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR 119 (135)
T ss_pred CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec
Confidence 567788878888999999999999999999999999998
No 74
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=4.4e-11 Score=99.34 Aligned_cols=85 Identities=19% Similarity=0.230 Sum_probs=72.5
Q ss_pred eeCCCCccHHHHHHHHHcC-----CcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHH
Q 013310 241 LDVNSKLDWEAMGKILARG-----HSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILN 315 (445)
Q Consensus 241 v~~~~sl~~e~l~~~~~~~-----~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~ 315 (445)
+++++++. ++++.|.+++ +..+||++++ ++++|+++.+|++... .+.++.++|..++..+++++++.++++
T Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~i~~~~~~~~~~~ 77 (109)
T cd04606 2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLAD--PDTPVSDIMDTDVISVSADDDQEEVAR 77 (109)
T ss_pred ccccCcHH-HHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCC--CcchHHHHhCCCCeEEcCCCCHHHHHH
Confidence 46788898 9999998777 3678999864 7899999999998642 245688888778889999999999999
Q ss_pred HHhhCCCeEEEEEc
Q 013310 316 EFQKGSSHMAAVVK 329 (445)
Q Consensus 316 ~m~~~~~~~a~Vvd 329 (445)
.|.+++.+.+||+|
T Consensus 78 ~~~~~~~~~~~Vv~ 91 (109)
T cd04606 78 LFEKYDLLALPVVD 91 (109)
T ss_pred HHHHcCCceeeeEC
Confidence 99999999999998
No 75
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.25 E-value=4.1e-11 Score=100.32 Aligned_cols=90 Identities=12% Similarity=0.307 Sum_probs=74.4
Q ss_pred ceEEeeCCCCccHHHHHHHHHcC-CcEEEeEeCCCCCEEEEEEhhhhhccCCC----CCCccccccccCCceeCCC--CC
Q 013310 237 STFSLDVNSKLDWEAMGKILARG-HSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSD--MP 309 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~-~s~~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~im~~~~~~V~~~--~~ 309 (445)
++..++.+.++. ++++.|.+++ +..+||.++ ++++|+++.+|+++.... ...++.++|.+++++++++ ++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~ 78 (115)
T cd04620 2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQD 78 (115)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccC
Confidence 355788999998 9999998888 667787763 789999999999864322 1256788888888889887 78
Q ss_pred HHHHHHHHhhCCCeEEEEEc
Q 013310 310 LYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 310 l~~al~~m~~~~~~~a~Vvd 329 (445)
+.++++.|.+++.+.+||+|
T Consensus 79 l~~a~~~~~~~~~~~~pVvd 98 (115)
T cd04620 79 IFTALSLFRQHQIRHLPVLD 98 (115)
T ss_pred HHHHHHHHHHhCCceEEEEc
Confidence 99999999999999999999
No 76
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.25 E-value=6.9e-11 Score=124.19 Aligned_cols=127 Identities=16% Similarity=0.177 Sum_probs=103.6
Q ss_pred HHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCC--CCCEEEEEEhhhhhccCCCCC
Q 013310 213 ETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPETE 290 (445)
Q Consensus 213 E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~--~~~ivGiv~~kDll~~~~~~~ 290 (445)
.++.++.+.+. +..|++ +++++++++++. ++++.|.+++++.+||++++ .++++|+|+.+|+.... ..+
T Consensus 92 q~~~Irkvk~~-----~~gmi~--dpvtV~pd~tV~-dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-~~~ 162 (505)
T PLN02274 92 QAAIVRKAKSR-----RVGFVS--DPVVKSPSSTIS-SLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-DRE 162 (505)
T ss_pred HHHHHHHhhcc-----cccccC--CCeeeCCCCcHH-HHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-ccC
Confidence 34555555543 222653 688999999998 99999999999999999863 36899999999996543 345
Q ss_pred CccccccccC--CceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccc
Q 013310 291 TPVSAVSIRR--IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNE 350 (445)
Q Consensus 291 ~~v~~im~~~--~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~ 350 (445)
.++.++|.++ ++++++++++.++++.|.+++.+.+||+|+.|.++|+| |.+|+++...
T Consensus 163 ~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvI--Tr~DIlk~~~ 222 (505)
T PLN02274 163 TKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLV--TRTDVKRVKG 222 (505)
T ss_pred CcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEE--EHHHHHHHhh
Confidence 7899999766 67999999999999999999999999999888888888 8888876665
No 77
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.24 E-value=4.2e-11 Score=99.72 Aligned_cols=90 Identities=20% Similarity=0.242 Sum_probs=76.7
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC----CC-CCccccccccCCceeCCCCCHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP----ET-ETPVSAVSIRRIPRVPSDMPLY 311 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~----~~-~~~v~~im~~~~~~V~~~~~l~ 311 (445)
++.+++.+.+++ ++.+.|.+++.+++||+++ ++++|+++.+|++.... .. ..++.++|.+++.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~ 78 (113)
T cd04587 2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVL 78 (113)
T ss_pred CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHH
Confidence 466788999998 9999999899999999985 78999999999874221 11 1567888888888999999999
Q ss_pred HHHHHHhhCCCeEEEEEc
Q 013310 312 DILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 312 ~al~~m~~~~~~~a~Vvd 329 (445)
++++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~l~Vv~ 96 (113)
T cd04587 79 EALHLMVQGKFRHLPVVD 96 (113)
T ss_pred HHHHHHHHcCCCcccEEC
Confidence 999999999999999998
No 78
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.24 E-value=4.9e-11 Score=99.99 Aligned_cols=91 Identities=16% Similarity=0.249 Sum_probs=76.1
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCC--CCCEEEEEEhhhhhccCCCCCCccccccccCCceeCC--CCCHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPS--DMPLYD 312 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~--~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~--~~~l~~ 312 (445)
++.+++.++++. ++++.|.+++++++||+++. .++++|+++.+|++.... ...+++++|..+...+.. ++++.+
T Consensus 3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~ 80 (114)
T cd04602 3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-SETPLSEVMTPREVLVVAPTGITLEE 80 (114)
T ss_pred CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-cCCCHHHhcCCCceEEECCCCCCHHH
Confidence 456788999998 99999998899999999852 378999999999875322 235688888776777755 999999
Q ss_pred HHHHHhhCCCeEEEEEc
Q 013310 313 ILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 313 al~~m~~~~~~~a~Vvd 329 (445)
+++.|++++.+.+||+|
T Consensus 81 ~l~~~~~~~~~~~pVv~ 97 (114)
T cd04602 81 ANEILRESKKGKLPIVN 97 (114)
T ss_pred HHHHHHhcCCCceeEEC
Confidence 99999999999999999
No 79
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.24 E-value=6e-11 Score=124.56 Aligned_cols=118 Identities=14% Similarity=0.219 Sum_probs=101.3
Q ss_pred ccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCC--CCCEEEEEEhhhhhccCCCCCCcccccccc--CCc
Q 013310 227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIR--RIP 302 (445)
Q Consensus 227 ~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~--~~~ivGiv~~kDll~~~~~~~~~v~~im~~--~~~ 302 (445)
++++.|.+ +++++++++++. ++++.|.+++++.+||++++ .++++|+|+.+|+.... ..+.+++++|.+ +++
T Consensus 97 ~~e~g~i~--dpvtv~pd~tv~-eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~~~~~V~diMt~~~~lv 172 (495)
T PTZ00314 97 RFENGFIM--DPYVLSPNHTVA-DVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-DKSTPVSEVMTPREKLV 172 (495)
T ss_pred cccccccc--CCeecCCCCCHH-HHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-cCCCCHHHhhCCcCCce
Confidence 34556764 567899999998 99999999999999999863 36899999999997532 334679999876 788
Q ss_pred eeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccc
Q 013310 303 RVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNE 350 (445)
Q Consensus 303 ~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~ 350 (445)
++++++++.++++.|.+++.+.+||+|+.|.+.|+| |.+|+++...
T Consensus 173 tv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGII--T~~DIl~~~~ 218 (495)
T PTZ00314 173 VGNTPISLEEANEVLRESRKGKLPIVNDNGELVALV--SRSDLKKNRG 218 (495)
T ss_pred EeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEE--EehHhhhccc
Confidence 999999999999999999999999999999999999 9999986654
No 80
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.23 E-value=3.7e-11 Score=99.76 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=74.9
Q ss_pred CceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCC--CCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHH
Q 013310 236 ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDI 313 (445)
Q Consensus 236 ~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~--~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~a 313 (445)
++...++++.++. ++.+.+.+.+++++||+++. .++++|+++.+|+.....+ +|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-------~m~~~~~~v~~~~~l~~~ 73 (105)
T cd04591 2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-------YIDPSPFTVSPRTSLEKV 73 (105)
T ss_pred CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-------hccCCCceECCCCcHHHH
Confidence 3567889999998 99999999999999999862 3789999999999865321 677888899999999999
Q ss_pred HHHHhhCCCeEEEEEc
Q 013310 314 LNEFQKGSSHMAAVVK 329 (445)
Q Consensus 314 l~~m~~~~~~~a~Vvd 329 (445)
++.|++++.+.+||++
T Consensus 74 ~~~~~~~~~~~~pVv~ 89 (105)
T cd04591 74 HQLFRKLGLRHLLVVD 89 (105)
T ss_pred HHHHHHcCCCEEEEEE
Confidence 9999999999999996
No 81
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=3.8e-11 Score=101.68 Aligned_cols=90 Identities=13% Similarity=0.209 Sum_probs=77.5
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC--------------CCCccccccccCCc
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------------TETPVSAVSIRRIP 302 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~--------------~~~~v~~im~~~~~ 302 (445)
++.+++++.++. ++++.+.+++++++||+++ ++++|+++.+|+.+.... ...++.++|.++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04637 2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI 78 (122)
T ss_pred CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence 467889999998 9999999999999999985 789999999998764211 12457788888899
Q ss_pred eeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 303 RVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 303 ~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
++++++++.++++.|.+++.+.+||+|
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~vv~ 105 (122)
T cd04637 79 TVSPDTPVDEASKLLLENSISCLPVVD 105 (122)
T ss_pred eeCCCCcHHHHHHHHHHcCCCeEeEEC
Confidence 999999999999999999999999998
No 82
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.22 E-value=4.1e-11 Score=125.33 Aligned_cols=101 Identities=19% Similarity=0.317 Sum_probs=84.4
Q ss_pred CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----CCCccccccc
Q 013310 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSI 298 (445)
Q Consensus 223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~im~ 298 (445)
+++.+|+++|.+ ++.++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|+++.... .+.++.++|.
T Consensus 332 l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~ 407 (454)
T TIGR01137 332 LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKANPDDAVSKVMS 407 (454)
T ss_pred hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCCHHHhcC
Confidence 788999999985 588899999998 99999999999999999865 789999999999864322 2357889988
Q ss_pred cCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 299 ~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
+++.++++++++.++++.|.+++ .++|++
T Consensus 408 ~~~~~v~~~~~l~~a~~~~~~~~--~~vV~~ 436 (454)
T TIGR01137 408 KKFIQIGEGEKLSDLSKFLEKNS--SAIVTE 436 (454)
T ss_pred CCCeEECCcCcHHHHHHHHHHCC--eeEEEE
Confidence 88889999999999999998764 344443
No 83
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.21 E-value=1.3e-10 Score=96.70 Aligned_cols=90 Identities=16% Similarity=0.241 Sum_probs=76.7
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhcc-CCC----CCCccccccccCCceeCCCCCHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV-RPE----TETPVSAVSIRRIPRVPSDMPLY 311 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~-~~~----~~~~v~~im~~~~~~V~~~~~l~ 311 (445)
++.+++.++++. ++.+.|.+++++.+||+++ ++++|+++.+|++.. ... ...++.++|.+.+.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 78 (113)
T cd04622 2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVD 78 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHH
Confidence 466789999998 9999999999999999986 799999999998632 111 11348888888889999999999
Q ss_pred HHHHHHhhCCCeEEEEEc
Q 013310 312 DILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 312 ~al~~m~~~~~~~a~Vvd 329 (445)
++++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~~V~~ 96 (113)
T cd04622 79 EAARLMREHQVRRLPVVD 96 (113)
T ss_pred HHHHHHHHcCCCeeeEEC
Confidence 999999999999999998
No 84
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=1.6e-10 Score=95.32 Aligned_cols=89 Identities=18% Similarity=0.246 Sum_probs=77.3
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~ 316 (445)
++++++.+.++. ++++.+.+.+++++||++++ ++++|+++.+++..... +.++.++|.+++.++++++++.++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (106)
T cd04638 2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPE--EEQLALLMTRDPPTVSPDDDVKEAAKL 77 (106)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhccc--cchHHHHhcCCCceECCCCCHHHHHHH
Confidence 467888999998 99999999999999999875 78999999999986422 245677777888899999999999999
Q ss_pred HhhCCCeEEEEEc
Q 013310 317 FQKGSSHMAAVVK 329 (445)
Q Consensus 317 m~~~~~~~a~Vvd 329 (445)
|.+++.+.+||+|
T Consensus 78 ~~~~~~~~~~Vvd 90 (106)
T cd04638 78 MVENNIRRVPVVD 90 (106)
T ss_pred HHHcCCCEEEEEE
Confidence 9999999999998
No 85
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.20 E-value=5.3e-12 Score=124.18 Aligned_cols=132 Identities=18% Similarity=0.201 Sum_probs=107.0
Q ss_pred CCCcccccccc--CCceeCCCCCHHHHHHHHhhCCCeEEEEEccC-CCccCCCCCCCCCcccccccCCCCCCCCcccccc
Q 013310 289 TETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSK 365 (445)
Q Consensus 289 ~~~~v~~im~~--~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~-G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~ 365 (445)
++.+|+++|.. ++.++++++++.++++.+.+++.+.+||+++. |.++|+| +.+|++...... ... ...
T Consensus 65 ~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv--~~kDll~~~~~~--~~~-----~~l 135 (292)
T PRK15094 65 ADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGIL--MAKDLLPFMRSD--AEA-----FSM 135 (292)
T ss_pred CCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEE--EHHHHHhHhhcc--CCc-----CCH
Confidence 34788999875 58899999999999999999999999999876 7899999 999988533210 000 001
Q ss_pred cccCCCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHHhcCccCCCCccc
Q 013310 366 QDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEY 439 (445)
Q Consensus 366 ~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l~g~ei~de~d~~ 439 (445)
...-...+.+++++++.++.+.|..+...++.+++ ++|+++|+||.+||+++++| +|.||+|..
T Consensus 136 ~~l~r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD---------e~G~viGiVTleDIle~ivG-ei~de~d~~ 199 (292)
T PRK15094 136 DKVLRQAVVVPESKRVDRMLKEFRSQRYHMAIVID---------EFGGVSGLVTIEDILELIVG-EIEDEYDEE 199 (292)
T ss_pred HHHcCCCcCcCCCCcHHHHHHHHHhcCCEEEEEEe---------CCCCEEEEeEHHHHHHHHhC-CCccccccc
Confidence 11223456899999999999999998888888888 89999999999999999998 999998843
No 86
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.20 E-value=1e-10 Score=121.91 Aligned_cols=117 Identities=18% Similarity=0.216 Sum_probs=100.9
Q ss_pred ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCcee
Q 013310 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRV 304 (445)
Q Consensus 225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V 304 (445)
..++.++|.+ +++++++++++. ++++.|.+++++.+||+++ ++++|+|+.+|+.... ...+++++|..+++++
T Consensus 87 ~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~--~~~~V~dIMt~~litv 159 (475)
T TIGR01303 87 FVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVD--RFTQVRDIMSTDLVTA 159 (475)
T ss_pred hcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCC--CCCCHHHHccCCceEe
Confidence 5678889975 578899999998 9999999999999999875 5899999999986542 3367999999999999
Q ss_pred CCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccc
Q 013310 305 PSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNE 350 (445)
Q Consensus 305 ~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~ 350 (445)
++++++.++++.|.+++.+.+||+|++|.++|+| |.+|+++...
T Consensus 160 ~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGII--T~~DLl~~~~ 203 (475)
T TIGR01303 160 PADTEPRKAFDLLEHAPRDVAPLVDADGTLAGIL--TRTGALRATI 203 (475)
T ss_pred CCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEE--EHHHHHHHHh
Confidence 9999999999999999999999999878888888 7777775444
No 87
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=9.6e-11 Score=97.50 Aligned_cols=90 Identities=14% Similarity=0.224 Sum_probs=75.9
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC-----CCCccccccccCCceeCCCCCHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TETPVSAVSIRRIPRVPSDMPLY 311 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~-----~~~~v~~im~~~~~~V~~~~~l~ 311 (445)
+++++++++++. ++++.+.+++++.++|.++ ++++|+++.+|+.+.... ...++.++|..++.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04625 2 TIYTVAPETLLS-EAVATMAEQDLGSLVVMER--GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSID 78 (112)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHH
Confidence 467889999998 9999998888888877653 789999999999864321 23568888877788999999999
Q ss_pred HHHHHHhhCCCeEEEEEc
Q 013310 312 DILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 312 ~al~~m~~~~~~~a~Vvd 329 (445)
++++.|.+++.+.+||+|
T Consensus 79 ~a~~~m~~~~~~~l~Vv~ 96 (112)
T cd04625 79 EVRRLMVERHLRYLPVLD 96 (112)
T ss_pred HHHHHHHHcCCCeeeEEE
Confidence 999999999999999998
No 88
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.19 E-value=1.5e-10 Score=96.27 Aligned_cols=90 Identities=17% Similarity=0.236 Sum_probs=77.4
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC-----CCCCccccccccCCceeCCCCCHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-----ETETPVSAVSIRRIPRVPSDMPLY 311 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~-----~~~~~v~~im~~~~~~V~~~~~l~ 311 (445)
+++++++++++. ++++.|.+++++.+||+++ ++++|+++.+|+++... ....++.++|.+++.++++++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04802 2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLN 78 (112)
T ss_pred CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHH
Confidence 456789999998 9999999999999999986 48999999999986431 123567888878888999999999
Q ss_pred HHHHHHhhCCCeEEEEEc
Q 013310 312 DILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 312 ~al~~m~~~~~~~a~Vvd 329 (445)
++++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~~Vv~ 96 (112)
T cd04802 79 EAAKLMAKHGIKRLPVVD 96 (112)
T ss_pred HHHHHHHHcCCCeeEEee
Confidence 999999999999999998
No 89
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.18 E-value=1.2e-10 Score=98.31 Aligned_cols=91 Identities=13% Similarity=0.205 Sum_probs=78.1
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC-------------CCCCccccccccCCce
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-------------ETETPVSAVSIRRIPR 303 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~-------------~~~~~v~~im~~~~~~ 303 (445)
++.+++.++++. ++++.+.+.+++++||++++ ++++|+++.+|+.+... ....++.++|..++.+
T Consensus 2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (121)
T cd04584 2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVIT 79 (121)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeE
Confidence 356788999998 99999999999999999875 79999999999875421 1125677888888899
Q ss_pred eCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 304 VPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 304 V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
+++++++.++++.|.+++.+.+||+|
T Consensus 80 i~~~~~l~~~~~~~~~~~~~~~~V~~ 105 (121)
T cd04584 80 VHPLDTVEEAALLMREHRIGCLPVVE 105 (121)
T ss_pred ECCCCcHHHHHHHHHHcCCCeEEEee
Confidence 99999999999999999999999998
No 90
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=1.1e-10 Score=98.47 Aligned_cols=90 Identities=19% Similarity=0.326 Sum_probs=77.7
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC--------------CCCccccccccCCc
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------------TETPVSAVSIRRIP 302 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~--------------~~~~v~~im~~~~~ 302 (445)
+++.+++++++. ++.+.+.+++++++||+++ ++++|+++.+|+.+.... ...++.++|..++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (121)
T cd04633 2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVI 78 (121)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCce
Confidence 456788999998 9999999999999999985 799999999998764321 12467778878889
Q ss_pred eeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 303 RVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 303 ~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
++++++++.++++.|.+.+.+.+||+|
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~ 105 (121)
T cd04633 79 TIEPDTSVSDVASLMLENNIGGLPVVD 105 (121)
T ss_pred EECCCCcHHHHHHHHHHcCCCcccEEE
Confidence 999999999999999999999999998
No 91
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.17 E-value=1.5e-10 Score=95.72 Aligned_cols=88 Identities=23% Similarity=0.380 Sum_probs=73.1
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC----CCccccccccCCceeCCCCCHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----ETPVSAVSIRRIPRVPSDMPLYD 312 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~----~~~v~~im~~~~~~V~~~~~l~~ 312 (445)
++.+++.++++. ++.+.|.+++++++||+++ ++++|+++.+|+.+..... ..++.++|.+++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 78 (110)
T cd04609 2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEE 78 (110)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHH
Confidence 356788999998 9999999999999999986 7899999999998753321 24677888788889999999999
Q ss_pred HHHHHhhCCCeEEEEEc
Q 013310 313 ILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 313 al~~m~~~~~~~a~Vvd 329 (445)
+++.|++ +. .+||+|
T Consensus 79 ~~~~~~~-~~-~~~vv~ 93 (110)
T cd04609 79 LSELLDR-GN-VAVVVD 93 (110)
T ss_pred HHHHHHh-CC-ceeEEe
Confidence 9999988 33 368888
No 92
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.16 E-value=5.7e-11 Score=115.48 Aligned_cols=110 Identities=12% Similarity=0.095 Sum_probs=96.9
Q ss_pred cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC---CCCccccccccCCc
Q 013310 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIP 302 (445)
Q Consensus 226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~---~~~~v~~im~~~~~ 302 (445)
.+|+++|.+. ++..+++++++. ++++.|.+.+++.+||++++ ++++|+++.+|+.+.... .+.+++++|.+++.
T Consensus 155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~ 231 (268)
T TIGR00393 155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK 231 (268)
T ss_pred hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence 6899999863 277899999998 99999999999999999865 789999999999865321 24678999988999
Q ss_pred eeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCC
Q 013310 303 RVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP 338 (445)
Q Consensus 303 ~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv 338 (445)
++++++++.++++.|.+++.+.+||+|+.|++.|+|
T Consensus 232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI 267 (268)
T TIGR00393 232 TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL 267 (268)
T ss_pred EECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEE
Confidence 999999999999999999999999999999999987
No 93
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.13 E-value=3.9e-10 Score=94.31 Aligned_cols=95 Identities=21% Similarity=0.354 Sum_probs=82.8
Q ss_pred cccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCC-C--ccccccccCCceeCC
Q 013310 230 EAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE-T--PVSAVSIRRIPRVPS 306 (445)
Q Consensus 230 diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~-~--~v~~im~~~~~~V~~ 306 (445)
++|. .+++++.++.++. ++...|.+++++.+||.++ ++++|+++.+|+.++..... . ++.++|.+++.++++
T Consensus 3 ~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~~ 77 (117)
T COG0517 3 DIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVDP 77 (117)
T ss_pred cccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEECC
Confidence 4454 4688999999998 9999999999999999975 37999999999998765432 2 488888889999999
Q ss_pred CCCHHHHHHHHhh-CCCeEEEEEc
Q 013310 307 DMPLYDILNEFQK-GSSHMAAVVK 329 (445)
Q Consensus 307 ~~~l~~al~~m~~-~~~~~a~Vvd 329 (445)
+.++.++++.|.+ ++.+.+||+|
T Consensus 78 ~~~~~~~~~~m~~~~~~~~lpVv~ 101 (117)
T COG0517 78 DTPLEEALELMVERHKIRRLPVVD 101 (117)
T ss_pred CCCHHHHHHHHHHHcCcCeEEEEE
Confidence 9999999999999 7999999999
No 94
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.13 E-value=4.3e-10 Score=92.32 Aligned_cols=91 Identities=21% Similarity=0.319 Sum_probs=77.2
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCC----CccccccccCCceeCCCCCHHH
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE----TPVSAVSIRRIPRVPSDMPLYD 312 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~----~~v~~im~~~~~~V~~~~~l~~ 312 (445)
++..++.+.++. ++++.+.+++++++||++++ ++++|+++.+|+........ ..+.++|..++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (113)
T cd02205 2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEE 79 (113)
T ss_pred CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHH
Confidence 456788999998 99999999899999999875 79999999999987543221 1145677888899999999999
Q ss_pred HHHHHhhCCCeEEEEEc
Q 013310 313 ILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 313 al~~m~~~~~~~a~Vvd 329 (445)
+++.|.+.+.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~~V~~ 96 (113)
T cd02205 80 AAELMLEHGIRRLPVVD 96 (113)
T ss_pred HHHHHHHcCCCEEEEEc
Confidence 99999999999999999
No 95
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=2.8e-10 Score=99.85 Aligned_cols=90 Identities=13% Similarity=0.262 Sum_probs=77.2
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----------------------------
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------------------------- 288 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~---------------------------- 288 (445)
++++++.+.++. ++++.|.+.+++.+||+++ ++++|+++.+|+++....
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (143)
T cd04634 2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE 78 (143)
T ss_pred CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence 467889999998 9999999999999999986 789999999998754211
Q ss_pred --------CCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 289 --------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 289 --------~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
...++.++|.+++.++++++++.++++.|++++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~ 127 (143)
T cd04634 79 TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE 127 (143)
T ss_pred HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence 12456677778899999999999999999999999999998
No 96
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.11 E-value=3.4e-10 Score=95.23 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=73.8
Q ss_pred ceEEeeCCCCccHHHHHHHHHcC-CcEEEeEeCCCCCEEEEEEhhhhhccCCC-------CCCccccccccCCceeCCCC
Q 013310 237 STFSLDVNSKLDWEAMGKILARG-HSRVPVYSGNPKNIIGLLLVKSLLTVRPE-------TETPVSAVSIRRIPRVPSDM 308 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~-~s~~PV~~~~~~~ivGiv~~kDll~~~~~-------~~~~v~~im~~~~~~V~~~~ 308 (445)
++.++++++++. ++++.+...+ ++.+||+++ ++++|+++.+|+.+.... .+.++.++|..++.++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~ 78 (119)
T cd04598 2 PAPTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADT 78 (119)
T ss_pred CcCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCC
Confidence 355788999998 9999998877 899999986 799999999998754321 23578888888888999999
Q ss_pred CHHHHHHHHhhCCCe---EEEEEc
Q 013310 309 PLYDILNEFQKGSSH---MAAVVK 329 (445)
Q Consensus 309 ~l~~al~~m~~~~~~---~a~Vvd 329 (445)
++.++++.|.+++.+ ..+|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~vv~ 102 (119)
T cd04598 79 PLEEVSRLATGRDSQNLYDGFIVT 102 (119)
T ss_pred CHHHHHHHHHcCCcccccccEEEe
Confidence 999999999988753 346777
No 97
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.07 E-value=2e-10 Score=117.70 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=90.2
Q ss_pred CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC----CCCCccccccc
Q 013310 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP----ETETPVSAVSI 298 (445)
Q Consensus 223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~----~~~~~v~~im~ 298 (445)
+--.+|+++|+. ..++|++.+++. ++.+.|.++|.+.+.+++++ +...|||+.+|+..... +...+|+++|+
T Consensus 146 ~~~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT 221 (610)
T COG2905 146 FILTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGRSKTQKVSEVMT 221 (610)
T ss_pred HHHHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCCCcccchhhhhc
Confidence 334578999985 577899999999 99999999999988888876 78999999999976532 23478999999
Q ss_pred cCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 299 ~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
.|+++|...+.+.+|+-.|.+++++.+||++
T Consensus 222 ~p~~svd~~~~~feAml~m~r~~I~hl~V~e 252 (610)
T COG2905 222 SPVISVDRGDFLFEAMLMMLRNRIKHLPVTE 252 (610)
T ss_pred cCceeecCcchHHHHHHHHHHhCCceeeeec
Confidence 9999999999999999999999999999985
No 98
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.96 E-value=1.8e-09 Score=93.89 Aligned_cols=94 Identities=19% Similarity=0.159 Sum_probs=77.1
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCC---c------------ccccc----
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET---P------------VSAVS---- 297 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~---~------------v~~im---- 297 (445)
++.++++++++. ++++.|.+++++.+||+|++ ++++|+++.+|++++...... . +.++|
T Consensus 2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 79 (133)
T cd04592 2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI 79 (133)
T ss_pred CceEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence 577899999998 99999999999999999875 789999999999875432111 1 22344
Q ss_pred -----ccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCC
Q 013310 298 -----IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKG 332 (445)
Q Consensus 298 -----~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G 332 (445)
..+++++++++++.++++.|.+++.+.+||+|+.+
T Consensus 80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 36688999999999999999999999999998543
No 99
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.84 E-value=8.9e-09 Score=110.29 Aligned_cols=118 Identities=16% Similarity=0.176 Sum_probs=99.6
Q ss_pred ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----------------
Q 013310 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------------- 288 (445)
Q Consensus 225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~---------------- 288 (445)
..+|+|+|++ +++++++++++. ++++.|.+++++.+||++++ ++++|+++.+|+.+...+
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~ 142 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN 142 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence 3689999985 688999999998 99999999999999999865 789999999998642000
Q ss_pred ---------------------------------------------C----------------------------------
Q 013310 289 ---------------------------------------------T---------------------------------- 289 (445)
Q Consensus 289 ---------------------------------------------~---------------------------------- 289 (445)
+
T Consensus 143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~ 222 (546)
T PRK14869 143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAK 222 (546)
T ss_pred HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence 0
Q ss_pred ----------------------CCccccccc-cCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcc
Q 013310 290 ----------------------ETPVSAVSI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKP 346 (445)
Q Consensus 290 ----------------------~~~v~~im~-~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~ 346 (445)
..+++++|. ++++++++++++.++.+.|.+++.+.+||+|++|+++|++ |.+|++
T Consensus 223 ~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGii--t~~dl~ 300 (546)
T PRK14869 223 ENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVI--SRYHLL 300 (546)
T ss_pred hCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEE--EHHHhh
Confidence 124667787 7889999999999999999999999999999999999999 888887
Q ss_pred cc
Q 013310 347 KL 348 (445)
Q Consensus 347 ~~ 348 (445)
+.
T Consensus 301 ~~ 302 (546)
T PRK14869 301 SP 302 (546)
T ss_pred cc
Confidence 53
No 100
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.71 E-value=2.4e-08 Score=73.09 Aligned_cols=37 Identities=22% Similarity=0.172 Sum_probs=34.8
Q ss_pred cccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 293 v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
|+++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d 37 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVD 37 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEES
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe
Confidence 3578888999999999999999999999999999999
No 101
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.53 E-value=1e-07 Score=69.68 Aligned_cols=54 Identities=26% Similarity=0.508 Sum_probs=49.7
Q ss_pred cccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhcc
Q 013310 228 AEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (445)
Q Consensus 228 V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~ 285 (445)
|+++|++ +++++++++++. ++++.|.+++++++||+|++ ++++|+++.+|++++
T Consensus 1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~ 54 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKA 54 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhh
Confidence 5789986 788999999998 99999999999999999876 899999999999875
No 102
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.44 E-value=1e-06 Score=89.74 Aligned_cols=91 Identities=16% Similarity=0.193 Sum_probs=74.4
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCC-----Cc-cccc------cccCCcee
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE-----TP-VSAV------SIRRIPRV 304 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~-----~~-v~~i------m~~~~~~V 304 (445)
++..+..++++. ++++.|...+++.+||++.+ ++.+|..+..|+.....++. .. ++.. ...+++++
T Consensus 238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc 315 (381)
T KOG1764|consen 238 NIASISEDTPVI-EALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC 315 (381)
T ss_pred hheeecCCCcHH-HHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence 588899999998 99999999999999999986 66799999999876543321 11 2111 12456789
Q ss_pred CCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 305 PSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 305 ~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
.++.++.+++..|..+++|.+.|||
T Consensus 316 ~~~ssL~~vi~~lv~~~vHRl~VVd 340 (381)
T KOG1764|consen 316 RPTSTLAEVIDKLVAHRVHRLWVVD 340 (381)
T ss_pred eecchHHHHHHHHHhcCceEEEEEc
Confidence 9999999999999999999999999
No 103
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=2.7e-06 Score=87.38 Aligned_cols=100 Identities=15% Similarity=0.148 Sum_probs=77.9
Q ss_pred cccccccccCCc-eEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCcee
Q 013310 226 KTAEEAMTPIES-TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRV 304 (445)
Q Consensus 226 ~~V~diMtpr~~-vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V 304 (445)
.++.++|.+... .+....+.+.. ++++.|...+.++..|+|++ ++++|+++.+++...... ...+.+.+.....++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 350 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQ-QQGLDAALIDAPLAV 350 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhc-CCchhhhhccCCcee
Confidence 567788853211 12233555666 89999999999999999875 799999999999765433 345667767778899
Q ss_pred CCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 305 PSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 305 ~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
++++++.+++..+.++... +||+|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~-~~v~~ 374 (400)
T PRK10070 351 DAQTPLSELLSHVGQAPCA-VPVVD 374 (400)
T ss_pred CCCCCHHHHHHHHHhCCCc-EEEEC
Confidence 9999999999999997777 89999
No 104
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.28 E-value=2.9e-07 Score=76.79 Aligned_cols=111 Identities=18% Similarity=0.262 Sum_probs=78.2
Q ss_pred CCceeCCCCCHHHHHHHHhhCC-CeEEEEEccCCCccCCCCCCCCCcccccccCCCCCCCCcccccccccCCCceEeecc
Q 013310 300 RIPRVPSDMPLYDILNEFQKGS-SHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVD 378 (445)
Q Consensus 300 ~~~~V~~~~~l~~al~~m~~~~-~~~a~Vvde~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 378 (445)
++.++++++++.++++.|.+++ .+.+||+|+.|++.|++ |.+|++....+... ..+.............++.+
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v--~~~dl~~~~~~~~~----~~~v~~~~~~~~~~~~v~~~ 75 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGII--SLADLRAIPTSQWA----QTTVIQVMTPAAKLVTVLSE 75 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEE--EHHHHHHHHHhhcc----ccchhhhhcccccceEECCC
Confidence 5678999999999999997665 88999999999999999 99998876532211 11111111111234577778
Q ss_pred CCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHH
Q 013310 379 RPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFE 425 (445)
Q Consensus 379 ~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile 425 (445)
.++.+..+.+........-+++ ++|+++|++|.+|+++
T Consensus 76 ~~l~~a~~~~~~~~~~~l~Vv~---------~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 76 ESLAEVLKLLEEQGLDELAVVE---------DSGQVIGLITEADLLR 113 (114)
T ss_pred CcHHHHHHHHHHCCCCeeEEEc---------CCCcEEEEEeccceec
Confidence 8888888877765543333333 4689999999999874
No 105
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.27 E-value=9.4e-06 Score=82.38 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=71.3
Q ss_pred EeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHHHhh
Q 013310 240 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQK 319 (445)
Q Consensus 240 ~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~m~~ 319 (445)
...++.+.. ++++.+...+.....|++++ +++.|.++.+++...... ...+.+.+.....++++++++.+++..|.+
T Consensus 254 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (363)
T TIGR01186 254 TKTADKGPR-SALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKK-AQGLQDVLIDDIYTVDAGTLLRETVRKVLK 330 (363)
T ss_pred eecCCCCHH-HHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhc-CCchhhhhccCCceECCCCcHHHHHHHHHh
Confidence 445666777 89999998899899999875 789999999998765433 235667777778899999999999999999
Q ss_pred CCCeEEEEEc
Q 013310 320 GSSHMAAVVK 329 (445)
Q Consensus 320 ~~~~~a~Vvd 329 (445)
++.. +||+|
T Consensus 331 ~~~~-~~v~~ 339 (363)
T TIGR01186 331 AGIK-VPVVD 339 (363)
T ss_pred CCCC-EEEEC
Confidence 9988 99999
No 106
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.15 E-value=2e-06 Score=89.48 Aligned_cols=105 Identities=21% Similarity=0.245 Sum_probs=82.8
Q ss_pred CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCC----CEEEEEEhhhhhccCCC----------
Q 013310 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPK----NIIGLLLVKSLLTVRPE---------- 288 (445)
Q Consensus 223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~----~ivGiv~~kDll~~~~~---------- 288 (445)
+++.+++|+|.+ ++++++.-..+. ...+.++.+.|..+||+|+..+ ++.|++-.+.++.....
T Consensus 579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~ 655 (762)
T KOG0474|consen 579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST 655 (762)
T ss_pred hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence 367899999986 799999999998 8899999999999999996433 67788877776421100
Q ss_pred ----------------C----------------CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEcc
Q 013310 289 ----------------T----------------ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA 330 (445)
Q Consensus 289 ----------------~----------------~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde 330 (445)
. -.++..+|-..+++|++++++..++..|++-+.+.+.||+.
T Consensus 656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~ 729 (762)
T KOG0474|consen 656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK 729 (762)
T ss_pred cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC
Confidence 0 01334445566789999999999999999999999999983
No 107
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.11 E-value=5e-06 Score=82.62 Aligned_cols=128 Identities=13% Similarity=0.162 Sum_probs=101.8
Q ss_pred CHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCC--CCCEEEEEEhhhhhccCC
Q 013310 210 THDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRP 287 (445)
Q Consensus 210 ~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~--~~~ivGiv~~kDll~~~~ 287 (445)
++++..+++.+-.|.. .-++ +.+.+.++.++. ++++.-.+++++.+||.++. ..+++|+|+.+|+-.. .
T Consensus 97 pe~QA~~v~~vK~~~~---g~~~----~p~v~sp~~tvg-~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~ 167 (503)
T KOG2550|consen 97 PEDQADMVRRVKNYEN---GFIN----NPIVISPTTTVG-EVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-E 167 (503)
T ss_pred HHHHHHHHHHHHHhhc---cccc----CCcccCCcccch-hhhhhcccccccccccccCCcccceeEEEEehhhhhhh-h
Confidence 3455666666655544 2233 344577889998 99999899999999999642 3579999999998654 4
Q ss_pred CCCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccc
Q 013310 288 ETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKL 348 (445)
Q Consensus 288 ~~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~ 348 (445)
++...+.++|+...++.+...++.++=+.+++++..-+||||+.|+++.++ ++.|+++.
T Consensus 168 ~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~--~rtDl~k~ 226 (503)
T KOG2550|consen 168 DNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAML--SRTDLMKN 226 (503)
T ss_pred cccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeee--ehhhhhhh
Confidence 456788999988889999999999999999999999999999988888888 77777644
No 108
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.82 E-value=8.2e-06 Score=85.36 Aligned_cols=100 Identities=16% Similarity=0.150 Sum_probs=81.7
Q ss_pred cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCce
Q 013310 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPR 303 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~ 303 (445)
.+.+++++|++ +++++++++++. ++++.|.++++..+||+|++ ++++|+|+.+|+++...+. ..+++|.....+
T Consensus 193 ~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~--~~ed~~~~~gv~ 266 (449)
T TIGR00400 193 PEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSE--ATEDFYMIAAVK 266 (449)
T ss_pred CCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhh--hHHHHHHhcCCC
Confidence 56689999986 577899999998 99999999999999999875 7899999999999865432 235666555554
Q ss_pred eCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 304 VPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 304 V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
..+++.+.+++..|.+++...++|.-
T Consensus 267 ~~~~~~l~~~~~~~~~~R~~wL~v~~ 292 (449)
T TIGR00400 267 PLDDSYFDTSILVMAKNRIIWLLVLL 292 (449)
T ss_pred CCcchhhhchHHHHHHhccchHHHHH
Confidence 44677889999999999998888863
No 109
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.73 E-value=5.7e-05 Score=62.69 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=48.8
Q ss_pred cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.+++++|.+ ++.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus 56 ~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR 110 (111)
T ss_pred cChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence 468899964 567899999998 99999999999999999865 78999999999875
No 110
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.72 E-value=1.8e-05 Score=84.85 Aligned_cols=118 Identities=11% Similarity=0.106 Sum_probs=89.7
Q ss_pred cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC---------------
Q 013310 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------------- 288 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~--------------- 288 (445)
...+|+++|+. +++++++++++++ ++.+.|.+++++.+||+|++ ++++|+++.+|++.....
T Consensus 244 ~~~~V~~iM~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~ 320 (546)
T PRK14869 244 QSIPVSYIMTT-EDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLSPVRKKVILVDHNEKSQAVE 320 (546)
T ss_pred cCCCHHHhccC-CCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhccccCceEEEcCcccccccc
Confidence 35789999982 3688999999998 99999999999999999875 799999999999864321
Q ss_pred ----C-------CCccccccccCCcee---CCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCccc
Q 013310 289 ----T-------ETPVSAVSIRRIPRV---PSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK 347 (445)
Q Consensus 289 ----~-------~~~v~~im~~~~~~V---~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~ 347 (445)
. -.+++++|.+.+..+ +...+..-+.+.|++.+....|++.. ....||+ |+.+.++
T Consensus 321 ~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~-~ll~gIl--sDT~~f~ 390 (546)
T PRK14869 321 GIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAG-LLLAAIL--SDTLLFK 390 (546)
T ss_pred chhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHH-HHHHHHH--HHhcCcc
Confidence 0 013455665555443 44556678888899999888888753 3578888 7766664
No 111
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.61 E-value=2.6e-05 Score=75.70 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=81.6
Q ss_pred CccccccccC-CceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccccCCCCCCCCcccccccccC
Q 013310 291 TPVSAVSIRR-IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEK 369 (445)
Q Consensus 291 ~~v~~im~~~-~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~ 369 (445)
.+++++|.++ ++.+++++++.++++.|.+.+.+.+||+|+.|++.|++ |.+|+.+...... ....+... ...
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Giv--t~~dl~~~~~~~~---~~~~~v~~--im~ 227 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVF--TDGDLRRALLGGG---SLKSEVRD--FMT 227 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEE--EcHHHHHHHhcCC---cccCcHHH--hCC
Confidence 4678888888 88999999999999999999999999999999999999 9999886543211 11111111 123
Q ss_pred CCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEee
Q 013310 370 TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIIT 419 (445)
Q Consensus 370 ~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT 419 (445)
.....++++.++.+..+.+........-+++ ++|+++|+|+
T Consensus 228 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---------~~g~l~GvI~ 268 (268)
T TIGR00393 228 LGPKTFKLDALLLEALEFLERRKITSLVVVD---------DHNKVLGVLH 268 (268)
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCcEEEEEC---------CCCeEEEEEC
Confidence 3355688888888877777765444322344 5689999985
No 112
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.61 E-value=8.3e-05 Score=70.06 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=38.0
Q ss_pred CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 290 ~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
+.++.++|.+++.++.+++++.++.+.|.+++++-+||+|
T Consensus 171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd 210 (294)
T COG2524 171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVD 210 (294)
T ss_pred cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceec
Confidence 4678999999999999999999999999999999999998
No 113
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.60 E-value=0.00013 Score=61.12 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=48.7
Q ss_pred cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.+|+++|.+ ++.++++++++. ++++.|.++++..+||++++ ++++|+++.+|+.+
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence 579999975 577899999998 99999999999999999865 78999999999864
No 114
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.59 E-value=0.00015 Score=59.92 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=50.4
Q ss_pred cCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 222 ~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
+....++.++|.+ ++.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|+++
T Consensus 55 ~~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~ 113 (114)
T cd04604 55 DILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHIHDLLR 113 (114)
T ss_pred ccccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence 3444579999976 467899999998 99999999999999999865 79999999999875
No 115
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.57 E-value=0.00012 Score=61.32 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=50.6
Q ss_pred cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCC--CCEEEEEEhhhhhc
Q 013310 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNP--KNIIGLLLVKSLLT 284 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~--~~ivGiv~~kDll~ 284 (445)
.+.+++++|+...++.++++++++. ++++.|.+++++++||++++. ++++|+|+.+|+++
T Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 56 QKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred cCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 4567888997423578999999998 999999999999999998752 58999999999864
No 116
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.56 E-value=0.00023 Score=75.13 Aligned_cols=102 Identities=15% Similarity=0.216 Sum_probs=70.7
Q ss_pred CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCC-
Q 013310 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRI- 301 (445)
Q Consensus 223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~- 301 (445)
..+.+|+++|++..+++++++++++. ++++.|.+++.+.+||+|++ ++++|+|+.+|+++..... ....+-.-+-.
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~~~~P-~a~~d~~grL~V 234 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSHKENP-LELLDSSKRYVV 234 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhcccCh-hhhhhhccCeee
Confidence 45678999999766788999999998 99999999999999999865 7899999999998864221 11111100100
Q ss_pred -ceeCCCCCHHHHHHHHhhCCCeEEEEE
Q 013310 302 -PRVPSDMPLYDILNEFQKGSSHMAAVV 328 (445)
Q Consensus 302 -~~V~~~~~l~~al~~m~~~~~~~a~Vv 328 (445)
..+..+ ...+-.+.+.+.+.+.+.|-
T Consensus 235 ~~av~~~-~~~~ra~~Lv~aGvd~i~vd 261 (502)
T PRK07107 235 GAGINTR-DYAERVPALVEAGADVLCID 261 (502)
T ss_pred eeccChh-hHHHHHHHHHHhCCCeEeec
Confidence 123222 24455666667777776553
No 117
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.53 E-value=0.00015 Score=60.75 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=36.2
Q ss_pred CccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 291 ~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd 96 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVD 96 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEEC
Confidence 468888888899999999999999999999999999999
No 118
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.50 E-value=0.00017 Score=60.11 Aligned_cols=56 Identities=23% Similarity=0.326 Sum_probs=49.1
Q ss_pred ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
+.+++++|.. ++.++++++++. ++++.|.+++..++||++++ ++++|+++.+|++.
T Consensus 58 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~ 113 (114)
T cd04619 58 TAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK 113 (114)
T ss_pred cCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence 4578899964 677899999998 99999999999999999865 78999999999864
No 119
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=97.43 E-value=0.00012 Score=70.22 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=53.6
Q ss_pred CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccc
Q 013310 290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNE 350 (445)
Q Consensus 290 ~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~ 350 (445)
..+..++|.|+++++++++++.++.++|++++++-+||+||+.+++||| |..|+.+...
T Consensus 244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiV--t~~dl~~~a~ 302 (382)
T COG3448 244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIV--TQRDLLKHAR 302 (382)
T ss_pred cccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeee--eHHHHhhccC
Confidence 3566789999999999999999999999999999999999999999999 9998876443
No 120
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.41 E-value=0.00028 Score=57.57 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=41.7
Q ss_pred eEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 238 vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
+.++++++++. ++++.|.+++.+++||++++.++++|+++.+|+++
T Consensus 52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 67899999998 99999999999999999865478999999999875
No 121
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.40 E-value=0.00048 Score=72.85 Aligned_cols=109 Identities=18% Similarity=0.238 Sum_probs=79.0
Q ss_pred ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCC---CccccccccCC
Q 013310 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE---TPVSAVSIRRI 301 (445)
Q Consensus 225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~---~~v~~im~~~~ 301 (445)
+.+++++|++ .+++++++++++. ++++.|.+++.+.+||++++ ++++|+++.+|+++.....+ ..-..++....
T Consensus 146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aa 222 (486)
T PRK05567 146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAA 222 (486)
T ss_pred CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhhCCCcccccCCCEEEEee
Confidence 3579999983 3688999999998 99999999999999999876 79999999999987542211 11112223333
Q ss_pred ceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCC
Q 013310 302 PRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP 338 (445)
Q Consensus 302 ~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv 338 (445)
..++++ -.+..+.|.+.+.+.+.|-..+|...|++
T Consensus 223 i~~~~~--~~e~a~~L~~agvdvivvD~a~g~~~~vl 257 (486)
T PRK05567 223 VGVGAD--NEERAEALVEAGVDVLVVDTAHGHSEGVL 257 (486)
T ss_pred cccCcc--hHHHHHHHHHhCCCEEEEECCCCcchhHH
Confidence 334442 27888889999999664443467777777
No 122
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.32 E-value=0.00051 Score=72.20 Aligned_cols=95 Identities=16% Similarity=0.199 Sum_probs=71.2
Q ss_pred cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCcccc----ccccCC
Q 013310 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSA----VSIRRI 301 (445)
Q Consensus 226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~----im~~~~ 301 (445)
.+++++|++ ++.++++++++. ++++.|.+++...+||+|++ ++++|+|+.+|+++..... +..+ .+....
T Consensus 148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~~--~~~~~~g~l~V~aa 221 (479)
T PRK07807 148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIYT--PAVDAAGRLRVAAA 221 (479)
T ss_pred CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCC--chhhhhhccchHhh
Confidence 579999985 688999999998 99999999999999999865 7899999999999864322 2211 111222
Q ss_pred ceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 302 PRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 302 ~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
+.......+.++.|.+.+.+. +++|
T Consensus 222 --v~~~~~~~~~a~~Lv~aGvd~-i~~D 246 (479)
T PRK07807 222 --VGINGDVAAKARALLEAGVDV-LVVD 246 (479)
T ss_pred --hccChhHHHHHHHHHHhCCCE-EEEe
Confidence 222334678888888888888 4556
No 123
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.30 E-value=0.00044 Score=57.19 Aligned_cols=55 Identities=20% Similarity=0.392 Sum_probs=48.1
Q ss_pred cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.+++++|.+ .+.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|++.
T Consensus 58 ~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 112 (113)
T cd04607 58 DPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDEE-GRVVGLATLDDLLS 112 (113)
T ss_pred CCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhcc
Confidence 468899965 477899999998 99999999999999999865 78999999999864
No 124
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.29 E-value=0.00039 Score=57.90 Aligned_cols=58 Identities=21% Similarity=0.399 Sum_probs=50.6
Q ss_pred CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
+.+.++.++|.+ ++.+++.++++. ++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt~~di~~ 121 (122)
T cd04585 64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDDQ-GRLVGIITESDLFR 121 (122)
T ss_pred hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECCC-CcEEEEEEHHHhhh
Confidence 345678999975 578899999998 99999999999999999864 78999999999875
No 125
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.28 E-value=0.00056 Score=56.70 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=47.4
Q ss_pred ccccccccccCCceEEeeCC--CCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 225 EKTAEEAMTPIESTFSLDVN--SKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 225 ~~~V~diMtpr~~vv~v~~~--~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
+.++.++|.+ ++.+++++ +++. ++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus 57 ~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence 4578899964 56778776 6787 99999999999999999865 78999999999875
No 126
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.27 E-value=0.00045 Score=58.01 Aligned_cols=58 Identities=19% Similarity=0.434 Sum_probs=50.7
Q ss_pred CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
....+++++|.+ ++.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|++.
T Consensus 66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvit~~di~~ 123 (124)
T cd04600 66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDED-RRLVGIVTQTDLIA 123 (124)
T ss_pred cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcCC-CCEEEEEEhHHhhc
Confidence 355678999974 578899999998 99999999999999999864 78999999999875
No 127
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.23 E-value=0.00034 Score=59.34 Aligned_cols=60 Identities=23% Similarity=0.357 Sum_probs=46.7
Q ss_pred cccccccccccCCceEEee----CCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 224 TEKTAEEAMTPIESTFSLD----VNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~----~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.+.+++++|.+....+.++ +++++. ++++.|.+++.+.+||++++.++++|+|+.+|+++
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 3467899997532233333 578888 99999999999999999864357999999999874
No 128
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.22 E-value=0.00052 Score=56.51 Aligned_cols=55 Identities=18% Similarity=0.389 Sum_probs=48.0
Q ss_pred ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
+.+++++|.+ ++.+++.++++. ++++.|.+++..++||+++ ++++|+++.+|+++
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence 4578899964 577899999998 9999999999999999984 78999999999875
No 129
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.22 E-value=0.00056 Score=56.13 Aligned_cols=56 Identities=20% Similarity=0.410 Sum_probs=49.3
Q ss_pred ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
+.+++++|.+ ++.+++++.++. ++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus 52 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence 4578999975 577899999998 99999999999999999865 78999999999875
No 130
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.21 E-value=0.00059 Score=55.60 Aligned_cols=56 Identities=21% Similarity=0.385 Sum_probs=48.4
Q ss_pred ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
+.+++++|.+ .+.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus 51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSK--DLVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCC--CCeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence 3468899965 467889999998 99999999999999999875 78999999999875
No 131
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.18 E-value=0.00036 Score=61.20 Aligned_cols=46 Identities=13% Similarity=0.145 Sum_probs=38.3
Q ss_pred ccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCC
Q 013310 292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP 338 (445)
Q Consensus 292 ~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv 338 (445)
..+.+|.+|++++.+++++.++++.|++++++.+||+++ |+++|-|
T Consensus 66 ta~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsI 111 (187)
T COG3620 66 TAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSI 111 (187)
T ss_pred eHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-Ceeeeee
Confidence 445689999999999999999999999999999999983 3333333
No 132
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.18 E-value=0.0012 Score=69.42 Aligned_cols=96 Identities=10% Similarity=0.127 Sum_probs=68.1
Q ss_pred cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCC--ce
Q 013310 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRI--PR 303 (445)
Q Consensus 226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~--~~ 303 (445)
.+++++|++ +++++++++++. ++++.|.+++...+||++++ ++++|+|+.+|+++..... +..+..-+.. -.
T Consensus 146 ~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~~~~~--~~~d~~grl~Vgaa 219 (475)
T TIGR01303 146 TQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRATIYT--PATDAAGRLRIGAA 219 (475)
T ss_pred CCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhCC--chhhhccCceehhe
Confidence 579999985 688999999998 99999999999999999865 7899999999998753321 2211100000 01
Q ss_pred eCCCCCHHHHHHHHhhCCCeEEEE
Q 013310 304 VPSDMPLYDILNEFQKGSSHMAAV 327 (445)
Q Consensus 304 V~~~~~l~~al~~m~~~~~~~a~V 327 (445)
+.......+.++.+.+.+...+.+
T Consensus 220 v~~~~~~~~ra~~Lv~aGVd~i~~ 243 (475)
T TIGR01303 220 VGINGDVGGKAKALLDAGVDVLVI 243 (475)
T ss_pred eeeCccHHHHHHHHHHhCCCEEEE
Confidence 333345567777777777766443
No 133
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.17 E-value=0.00073 Score=56.91 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=45.0
Q ss_pred cccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhh
Q 013310 228 AEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLL 283 (445)
Q Consensus 228 V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll 283 (445)
+.++|.+ ++.++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|+.
T Consensus 70 ~~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTS--DVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR 121 (123)
T ss_pred hcccCcC--CceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence 3457754 577899999998 99999999999999999875 7899999999975
No 134
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.17 E-value=0.001 Score=45.22 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=26.8
Q ss_pred CceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 301 ~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
+.++++++++.++++.|.+++.+.+||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 30 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVD 30 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEEC
Confidence 56789999999999999999999999998
No 135
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.16 E-value=0.00069 Score=56.19 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=49.0
Q ss_pred cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.+.+++++|.+ ++.++++++++. ++++.|.+++...+||+++ ++++|+++.+|+++
T Consensus 58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFL 113 (114)
T ss_pred CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence 34578899964 578999999998 9999999999999999986 78999999999875
No 136
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.16 E-value=0.0007 Score=55.57 Aligned_cols=55 Identities=22% Similarity=0.475 Sum_probs=48.5
Q ss_pred ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
+.+++++|.+ ++.+++++.++. ++++.+.+++.+++||+++ ++++|+++.+|+++
T Consensus 58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence 4578999965 577899999998 9999999999999999986 78999999999875
No 137
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.14 E-value=0.0011 Score=70.26 Aligned_cols=102 Identities=13% Similarity=0.193 Sum_probs=70.5
Q ss_pred cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCC--CccccccccCC
Q 013310 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE--TPVSAVSIRRI 301 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~--~~v~~im~~~~ 301 (445)
.+.+|+++|++...++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|+++...... .+..|-.-+-.
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~ 238 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLL 238 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCcCccccccCCCCCEE
Confidence 4678999999765688999999998 99999999999999999865 78999999999987643211 11111111100
Q ss_pred --ceeCCCCCHHHHHHHHhhCCCeEEEE
Q 013310 302 --PRVPSDMPLYDILNEFQKGSSHMAAV 327 (445)
Q Consensus 302 --~~V~~~~~l~~al~~m~~~~~~~a~V 327 (445)
..|.....-.+-.+.+.+.+..++.+
T Consensus 239 vgaavg~~~~~~~r~~~l~~ag~d~i~i 266 (505)
T PLN02274 239 VGAAIGTRESDKERLEHLVKAGVDVVVL 266 (505)
T ss_pred EEEEEcCCccHHHHHHHHHHcCCCEEEE
Confidence 12333333455666666777777644
No 138
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.13 E-value=0.0011 Score=53.96 Aligned_cols=54 Identities=15% Similarity=0.314 Sum_probs=46.8
Q ss_pred ccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 227 ~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
+++++|.+ ....+++++++. ++++.|.+++.+.+||++++ ++++|+++.+|++.
T Consensus 52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 47788875 356789999998 99999999999999999875 78999999999864
No 139
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.13 E-value=0.00082 Score=55.42 Aligned_cols=57 Identities=19% Similarity=0.345 Sum_probs=48.9
Q ss_pred cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.+.++.++|.+ ++.+++.++++. ++++.|.+++..++||++++ ++++|+++.+|+++
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 KDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR 112 (113)
T ss_pred cCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence 34578888964 577899999998 99999999999999999865 78999999999874
No 140
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.13 E-value=0.00084 Score=67.21 Aligned_cols=58 Identities=22% Similarity=0.367 Sum_probs=51.5
Q ss_pred CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhcc
Q 013310 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (445)
Q Consensus 223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~ 285 (445)
+.+.+|+++|++ ++.++++++++. ++++.|.+++..++||+++ ++++|+|+.+|++++
T Consensus 266 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~ 323 (326)
T PRK10892 266 LRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA 323 (326)
T ss_pred cccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence 456789999986 678999999998 9999999999999999974 689999999999864
No 141
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.12 E-value=0.00089 Score=55.13 Aligned_cols=55 Identities=20% Similarity=0.361 Sum_probs=47.9
Q ss_pred cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.+++++|.+ ++.+++.++++. ++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 358899975 577899999998 99999999999999999865 78999999999875
No 142
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.11 E-value=0.00083 Score=58.07 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=49.2
Q ss_pred cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.+.+++++|.+ ++.++++++++. ++++.|.+++++.+||+++ ++++|+|+.+|+++
T Consensus 79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence 35679999975 567899999998 9999999999999999985 78999999999875
No 143
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.0026 Score=66.97 Aligned_cols=101 Identities=16% Similarity=0.204 Sum_probs=71.6
Q ss_pred cccccccC---CceEEeeCC-CCccHHHHHHHHHcCCcEEEeEe-CCCCCEEEEEEhhhhhccCC------C--------
Q 013310 228 AEEAMTPI---ESTFSLDVN-SKLDWEAMGKILARGHSRVPVYS-GNPKNIIGLLLVKSLLTVRP------E-------- 288 (445)
Q Consensus 228 V~diMtpr---~~vv~v~~~-~sl~~e~l~~~~~~~~s~~PV~~-~~~~~ivGiv~~kDll~~~~------~-------- 288 (445)
..++|.|+ .....++.+ .+++ +....|.++.++.+||+- ++.+.++|++..+|+..... +
T Consensus 545 ~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~ 623 (696)
T KOG0475|consen 545 AIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIY 623 (696)
T ss_pred hhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccc
Confidence 44555543 234455544 7787 888888899999999875 44578999999999853321 0
Q ss_pred -------------CCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 289 -------------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 289 -------------~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
+....+++|--.+.+|..++|...++++|++-+.+...|..
T Consensus 624 f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~ 677 (696)
T KOG0475|consen 624 FNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK 677 (696)
T ss_pred cCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc
Confidence 01235566655677899999999999999988888877753
No 144
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.08 E-value=0.0014 Score=53.05 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=38.0
Q ss_pred cCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcc
Q 013310 299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKP 346 (445)
Q Consensus 299 ~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~ 346 (445)
++++.+++++++.++++.|.+++.+.+||+|+.|+..|++ |.+|+.
T Consensus 1 ~~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv--~~~dl~ 46 (96)
T cd04614 1 RNVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGII--TERDLI 46 (96)
T ss_pred CCccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEE--EHHHHh
Confidence 3577899999999999999989999999999766666776 555554
No 145
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.08 E-value=0.00083 Score=56.46 Aligned_cols=57 Identities=16% Similarity=0.378 Sum_probs=49.6
Q ss_pred cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.+.+++++|.+ ++.++++++++. ++++.|.+.+.+.+||++++ ++++|+|+.+|+++
T Consensus 68 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~ 124 (125)
T cd04631 68 INEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK 124 (125)
T ss_pred hhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence 44578889864 588999999998 99999999999999999865 78999999999875
No 146
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.07 E-value=0.0011 Score=54.90 Aligned_cols=55 Identities=25% Similarity=0.541 Sum_probs=47.3
Q ss_pred ccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCC-CCCEEEEEEhhhhhc
Q 013310 227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN-PKNIIGLLLVKSLLT 284 (445)
Q Consensus 227 ~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~-~~~ivGiv~~kDll~ 284 (445)
+++++|.+ ++.++++++++. ++++.|.+++...+||++++ .++++|+++.+|+++
T Consensus 59 ~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 59 AVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred cHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 47788864 577899999998 99999999999999999864 268999999999875
No 147
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.05 E-value=0.001 Score=66.34 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=50.6
Q ss_pred ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhcc
Q 013310 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (445)
Q Consensus 225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~ 285 (445)
+.+|+++|++ ++.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++++
T Consensus 262 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~~ 318 (321)
T PRK11543 262 TTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQA 318 (321)
T ss_pred CCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHhc
Confidence 4568999985 577899999998 99999999999999999865 689999999999864
No 148
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.05 E-value=0.0022 Score=67.84 Aligned_cols=106 Identities=14% Similarity=0.187 Sum_probs=72.4
Q ss_pred cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCC---CccccccccC
Q 013310 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE---TPVSAVSIRR 300 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~---~~v~~im~~~ 300 (445)
.+.+|+++|++..++++++++.++. ++++.|.+++...+||++++ ++++|+|+.+|+++...... ..-+.+...
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vg- 233 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNRGYPNASLDSNGQLLVG- 233 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhcccCchhhhccCCCEEEE-
Confidence 3568999999766789999999998 99999999999999999875 78999999999997643111 000111111
Q ss_pred CceeCCCCCHHHHHHHHhhCCCeEEEEEccCCC
Q 013310 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333 (445)
Q Consensus 301 ~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~ 333 (445)
..+.......+-++.+.+.+...+.|--.+|.
T Consensus 234 -aavg~~~~~~~~~~~l~~ag~d~i~id~a~G~ 265 (495)
T PTZ00314 234 -AAISTRPEDIERAAALIEAGVDVLVVDSSQGN 265 (495)
T ss_pred -EEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence 12332223356666677777777655333443
No 149
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.04 E-value=0.0011 Score=54.55 Aligned_cols=57 Identities=14% Similarity=0.306 Sum_probs=49.4
Q ss_pred ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhcc
Q 013310 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (445)
Q Consensus 225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~ 285 (445)
+.+++++|.+ ++..+++++++. ++++.|.+++...+||++++ ++++|+++..|+++.
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhh
Confidence 4578899965 577899999998 99999999999999999865 789999999998864
No 150
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.04 E-value=0.0014 Score=53.79 Aligned_cols=57 Identities=23% Similarity=0.383 Sum_probs=49.2
Q ss_pred ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
..++.++|.+ ++.++++++++. ++++.|.+.+.+.+||++++.++++|+++.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 4678999976 577899999998 99999999999999999862378999999999874
No 151
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.02 E-value=0.0018 Score=56.13 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=27.7
Q ss_pred CCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 300 ~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
++.++++++++.++++.|.+++.+.+||+|
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD 31 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVD 31 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 467899999999999999999999999999
No 152
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.02 E-value=0.001 Score=56.83 Aligned_cols=55 Identities=18% Similarity=0.408 Sum_probs=48.5
Q ss_pred ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
..++.++|.+ ++..++.++++. ++++.|.+++.+++||+++ ++++|+++.+|+++
T Consensus 77 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~ 131 (132)
T cd04636 77 GKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR 131 (132)
T ss_pred CCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence 4478999974 578899999998 9999999999999999986 78999999999875
No 153
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.02 E-value=0.00096 Score=55.36 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=46.0
Q ss_pred cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.+++++|.+....+..++++++. ++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence 45889997643333334499998 99999999999999999865 68999999999864
No 154
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.01 E-value=0.00097 Score=54.87 Aligned_cols=55 Identities=24% Similarity=0.361 Sum_probs=48.1
Q ss_pred cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.++.++|.+ ...++++++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence 578899964 467899999998 99999999999999999875 78999999999874
No 155
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.00 E-value=0.0012 Score=54.21 Aligned_cols=56 Identities=23% Similarity=0.261 Sum_probs=48.7
Q ss_pred cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.+.+++++|.+ ++..+++++++. ++++.|.+++...+||+++ ++++|+++.+|+++
T Consensus 55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence 34578899964 578899999998 9999999999999999975 68999999999875
No 156
>COG0517 FOG: CBS domain [General function prediction only]
Probab=96.99 E-value=0.0022 Score=53.05 Aligned_cols=54 Identities=22% Similarity=0.485 Sum_probs=47.1
Q ss_pred ccccccccCCceEEeeCCCCccHHHHHHHHH-cCCcEEEeEeCCCCCEEEEEEhhhhh
Q 013310 227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILA-RGHSRVPVYSGNPKNIIGLLLVKSLL 283 (445)
Q Consensus 227 ~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~-~~~s~~PV~~~~~~~ivGiv~~kDll 283 (445)
+++++|++ .++++.++.++. ++.+.|.+ ++++++||++++.++++|+++.+|++
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 78999985 578899999998 99999999 79999999997522899999999973
No 157
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=96.99 E-value=0.0015 Score=53.28 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=46.7
Q ss_pred cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.++.++|.+ +..+++++.++. ++++.|.+++...+||+++ ++++|+++.+|++.
T Consensus 50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~iGvit~~dl~~ 103 (104)
T cd04594 50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVDD--GKFKGIVTLDSILD 103 (104)
T ss_pred cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEEC--CEEEEEEEHHHhhc
Confidence 357788875 467899999998 9999999999999999973 78999999999864
No 158
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=96.98 E-value=0.0013 Score=53.67 Aligned_cols=56 Identities=27% Similarity=0.452 Sum_probs=46.2
Q ss_pred ccccccccccCCceEEeeC-CCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 225 EKTAEEAMTPIESTFSLDV-NSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 225 ~~~V~diMtpr~~vv~v~~-~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
+.++.++|.+ ++..+.. ++++. ++++.|.+++++.+||++++ ++++|+++.+|+++
T Consensus 53 ~~~v~~~~~~--~~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTP--ENLLTTVEGTSLE-EALELLHEHKIEKLPVVDDE-GKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhccc--CceEEecCCCCHH-HHHHHHHHhCCCeeeEEcCC-CCEEEEEEhhhhhc
Confidence 4578899964 3444556 99998 99999999999999999864 78999999999874
No 159
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.98 E-value=0.0013 Score=54.03 Aligned_cols=55 Identities=24% Similarity=0.448 Sum_probs=47.9
Q ss_pred ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
+.++.++|.+ ++.++++++++. ++++.|.+++..++||+++ ++++|+++..|++.
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVSQ--DVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhcC--CcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence 3568888964 677899999998 9999999999999999986 78999999999864
No 160
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.98 E-value=0.0019 Score=54.03 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=38.1
Q ss_pred CCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCccc
Q 013310 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK 347 (445)
Q Consensus 300 ~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~ 347 (445)
++.++++++++.++++.|.+++.+.+||+|+.|++.|++ |.+|++.
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv--~~~dl~~ 47 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVY--SRFDVIN 47 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEE--eHHHHHH
Confidence 567899999999999999999999999999666666666 6666653
No 161
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.98 E-value=0.00083 Score=57.62 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=50.0
Q ss_pred CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
....+++++|.+ ++.++++++++. ++++.|.+++.+++||++ + ++++|+++.+|+++
T Consensus 78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~ 134 (135)
T cd04586 78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLR 134 (135)
T ss_pred hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhc
Confidence 355689999965 578899999998 999999999999999998 4 79999999999875
No 162
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.98 E-value=0.0012 Score=55.20 Aligned_cols=57 Identities=19% Similarity=0.403 Sum_probs=49.4
Q ss_pred cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
...++.++|.+ ++..++.++++. ++++.|.+++.+.+||++++ ++++|+++.+|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence 45678889864 577899999998 99999999999999999865 78999999999875
No 163
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=96.98 E-value=0.003 Score=64.58 Aligned_cols=115 Identities=18% Similarity=0.186 Sum_probs=87.2
Q ss_pred ccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC----------CCccccc---ccc
Q 013310 233 TPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----------ETPVSAV---SIR 299 (445)
Q Consensus 233 tpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~----------~~~v~~i---m~~ 299 (445)
++....+++.+..++- ++...+.+++++|+||.|.+.+++..+++.+-+++..... ..++.+. +..
T Consensus 159 ~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~ 237 (381)
T KOG1764|consen 159 TLKPPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWS 237 (381)
T ss_pred ccCCCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhh
Confidence 3333447888888887 8888999999999999995567999999999998754221 1122221 123
Q ss_pred CCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccc
Q 013310 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNE 350 (445)
Q Consensus 300 ~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~ 350 (445)
.+..+.+++++.+|+++|...+..-+||||+.|+.+|.+ +..|+.....
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~--s~~Dv~~l~~ 286 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNY--SRFDVIHLAR 286 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecce--ehhhhhhhhh
Confidence 577899999999999999999999999999888888877 6556554443
No 164
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.97 E-value=0.0009 Score=55.89 Aligned_cols=57 Identities=12% Similarity=0.353 Sum_probs=49.7
Q ss_pred CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
+.+.++.++|.+ +..+++.++++. ++++.+.+.+.+.+||+++ ++++|+++.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 345678899964 577899999998 9999999999999999986 78999999999875
No 165
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.96 E-value=0.0016 Score=53.47 Aligned_cols=56 Identities=18% Similarity=0.361 Sum_probs=48.6
Q ss_pred cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.+.+++++|.+ .+.+++.++++. ++++.|.+++.+.+||++ + ++++|+++.+|+++
T Consensus 54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~-~-~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE-D-GRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe-C-CEEEEEEEhHHhhc
Confidence 45678899975 577899999998 999999999999999998 3 78999999999874
No 166
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=96.96 E-value=0.0015 Score=53.33 Aligned_cols=55 Identities=29% Similarity=0.563 Sum_probs=47.7
Q ss_pred cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.++.++|.+ ++.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|+++
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence 457888875 577899999998 99999999999999999865 78999999999874
No 167
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=96.96 E-value=0.0018 Score=53.05 Aligned_cols=55 Identities=20% Similarity=0.384 Sum_probs=47.7
Q ss_pred cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.++.++|.+ ++.+++.++++. ++++.|.+++.+.+||++++ ++++|+++.+|+++
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDDS-GRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcCC-CCEEEEEEHHHhhh
Confidence 457788875 578899999998 99999999999999999864 78999999999865
No 168
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.96 E-value=0.0015 Score=54.61 Aligned_cols=57 Identities=16% Similarity=0.327 Sum_probs=49.4
Q ss_pred cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.+.++.++|.. ++.++++++++. ++++.|.+.+.+.+||++++ ++++|+++.+|++.
T Consensus 65 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKT--DVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCC--CCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence 45678889953 577899999998 99999999999999999875 68999999999874
No 169
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=96.95 E-value=0.0016 Score=53.26 Aligned_cols=57 Identities=19% Similarity=0.321 Sum_probs=48.9
Q ss_pred cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.+.+++++|.+ ++.++++++++. ++++.|.+.+...+||++++ ++++|+++.+|+++
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence 34678889864 577899999998 99999999999999999875 78999999999874
No 170
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=96.92 E-value=0.0014 Score=54.60 Aligned_cols=57 Identities=19% Similarity=0.280 Sum_probs=49.9
Q ss_pred CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
..+.+++++|.+ .+.+++.++++. ++++.+.+++++.+||+++ ++++|+++.+|+++
T Consensus 64 ~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~ 120 (121)
T cd04584 64 LLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR 120 (121)
T ss_pred hcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence 456678999975 577899999998 9999999999999999975 78999999999875
No 171
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.90 E-value=0.0012 Score=54.35 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=48.2
Q ss_pred ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
+.++.++|.+ ++.++++++++. ++++.|.+++.+.+||+++ +.++|+++.+|+++
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence 4578899975 577899999998 9999999999999999986 78999999999875
No 172
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.88 E-value=0.0016 Score=53.42 Aligned_cols=55 Identities=18% Similarity=0.327 Sum_probs=47.9
Q ss_pred cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.++.++|.. ++.+++.+.++. ++++.|.+++..++||++++ ++++|+++.+|+..
T Consensus 56 ~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRR--DFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcC--CCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence 468888964 677899999998 99999999999999999865 78999999999864
No 173
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.87 E-value=0.0018 Score=52.52 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=48.1
Q ss_pred ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
+.++.++|.+ +..+++.++++. ++++.|.+++...+||+++ ++++|+++.+|++.
T Consensus 50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~~ 104 (105)
T cd04599 50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIAL 104 (105)
T ss_pred cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhcc
Confidence 3468889965 577899999998 9999999999999999986 78999999999863
No 174
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.87 E-value=0.0018 Score=53.27 Aligned_cols=56 Identities=23% Similarity=0.464 Sum_probs=48.1
Q ss_pred cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.+.+++++|.+ ++.++++++++. ++++.+.+++...+||++++ +++|+++.+|+++
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~--~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDDD--ELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeCC--EEEEEEEhhhhhc
Confidence 34578899965 577889999998 99999999999999999863 8999999999864
No 175
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=96.86 E-value=0.0019 Score=43.82 Aligned_cols=46 Identities=17% Similarity=0.457 Sum_probs=39.9
Q ss_pred eEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhcc
Q 013310 238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (445)
Q Consensus 238 vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~ 285 (445)
+.++++++++. ++++.|.+++++.+||++++ ++++|+++.+++.+.
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHh
Confidence 45678899998 99999999999999999875 789999999998754
No 176
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=96.79 E-value=0.002 Score=52.81 Aligned_cols=55 Identities=24% Similarity=0.433 Sum_probs=48.2
Q ss_pred ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
+.++.++|.. ++.++++++++. ++++.|.+++.+++||+++ ++++|+++.+|+++
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 3568888864 578899999998 9999999999999999986 78999999999874
No 177
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.78 E-value=0.0036 Score=51.38 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=47.6
Q ss_pred cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.+++++|.+ ++.+++.++++. ++++.+.+++...+||++++ ++++|+++.+|+++
T Consensus 57 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~ 111 (112)
T cd04624 57 TPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR 111 (112)
T ss_pred cCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence 467888864 577899999998 99999999999999999875 78999999999875
No 178
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.77 E-value=0.002 Score=54.51 Aligned_cols=58 Identities=21% Similarity=0.377 Sum_probs=49.0
Q ss_pred cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeC-CCCCEEEEEEhhhhhc
Q 013310 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSG-NPKNIIGLLLVKSLLT 284 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~-~~~~ivGiv~~kDll~ 284 (445)
.+.+++++|++ ++++++++.++. ++++.|.+++...+||+++ +.++++|+|+.+|+++
T Consensus 69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 45678899974 578899999998 9999999999999999853 3478999999999875
No 179
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=96.76 E-value=0.0047 Score=52.41 Aligned_cols=40 Identities=13% Similarity=0.109 Sum_probs=32.1
Q ss_pred cCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCC
Q 013310 299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP 338 (445)
Q Consensus 299 ~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv 338 (445)
+++.+++++.++.++++.|++++...+||+|+.|+..|++
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii 41 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMV 41 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEE
Confidence 5678899999999999999999999999999433333333
No 180
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.75 E-value=0.0021 Score=53.78 Aligned_cols=55 Identities=29% Similarity=0.448 Sum_probs=48.0
Q ss_pred cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.+++++|.+ ++++++.++++. ++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence 357888864 578899999998 99999999999999999865 78999999999875
No 181
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.73 E-value=0.0026 Score=52.21 Aligned_cols=53 Identities=11% Similarity=0.203 Sum_probs=45.2
Q ss_pred ccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 227 ~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.+.++|. ++.+++.++++. ++++.|.+++.+.+||++++ ++++|+++.+|+++
T Consensus 58 ~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 110 (111)
T cd04590 58 DLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDEY-GGTAGLVTLEDILE 110 (111)
T ss_pred CHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEECC-CCEEEEeEHHHhhc
Confidence 4666664 367889999998 99999999999999999875 78999999999874
No 182
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.68 E-value=0.0047 Score=50.95 Aligned_cols=48 Identities=15% Similarity=-0.018 Sum_probs=39.3
Q ss_pred CCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCccccc
Q 013310 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLN 349 (445)
Q Consensus 300 ~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i 349 (445)
+++++++++++.++++.|.+++.+.+||+|+.|+..|++ +.+|+.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv--~~~dl~~~~ 49 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTI--SLTDILWKL 49 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEE--eHHHHHHHh
Confidence 467899999999999999999999999999767777777 666665433
No 183
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.65 E-value=0.005 Score=50.37 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=46.4
Q ss_pred ccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 227 ~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
+++++|.+ ++.+++.++++. ++++.|.+++...+||++++ ++++|+++.+|+.+
T Consensus 56 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDAE-NRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhhh
Confidence 47788854 577899999998 99999999999999999865 78999999999864
No 184
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.61 E-value=0.0043 Score=52.46 Aligned_cols=51 Identities=20% Similarity=0.293 Sum_probs=44.1
Q ss_pred cccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 230 EAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 230 diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
+.|. .++.++++++++. ++++.|.+++.+++||++++ ++++|+++..|+++
T Consensus 75 ~~~~--~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKS--RPLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS 125 (126)
T ss_pred cccc--CCCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence 4554 3577899999998 99999999999999999875 78999999999875
No 185
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=96.57 E-value=0.0042 Score=50.84 Aligned_cols=55 Identities=16% Similarity=0.301 Sum_probs=47.4
Q ss_pred cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.++.++|.+ .+.+++++.++. ++++.|.+.+...+||++++ ++++|+++.+|+++
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence 467888864 577899999998 99999999999999999865 78999999999874
No 186
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.57 E-value=0.0068 Score=62.05 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=63.0
Q ss_pred HHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC-CCCcc
Q 013310 215 TIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-TETPV 293 (445)
Q Consensus 215 ~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~-~~~~v 293 (445)
..+..+-..+-.+++++|.|.... ...+.+ .++ .+++.+.+.|+++ |+++..+....... .+..+
T Consensus 263 ~~~~~~~~~~~l~a~~~m~~~~~~--~~~~~~---~~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 328 (382)
T TIGR03415 263 DFVAHTNPLNVLTARSLMRPLTDL--EHVDGG---WCV---SDRRDTWLFTIDK------QVRRRDAKLPVQAWAAEQEV 328 (382)
T ss_pred HHhcccCcccceeHHHHhcccccc--cccCcc---hhh---hhcccceeEeecc------ceecccchHhHhhcccccch
Confidence 334444444557899999763322 222222 222 3378888888864 88887776543221 22346
Q ss_pred ccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 294 SAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 294 ~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
.+ +.....++++++++.+++..+.+.... ++|+|
T Consensus 329 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 362 (382)
T TIGR03415 329 ES-LEAAPTVINPDTLMRDVLAARHRTGGA-ILLVE 362 (382)
T ss_pred hh-hcccCcccCCCCcHHHHHHHHhcCCCC-eEEee
Confidence 56 467788999999999999998887766 45666
No 187
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.53 E-value=0.0073 Score=59.25 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=72.4
Q ss_pred HHHHHHHhhcCcccccccccccCCceEEeeCCC-CccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCC
Q 013310 213 ETTIISGALDLTEKTAEEAMTPIESTFSLDVNS-KLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET 291 (445)
Q Consensus 213 E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~-sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~ 291 (445)
-++.++++-...-.++++||.+ .+......+. .-. .+...+.+.+.+.+-+++. .++.+|+++..+....
T Consensus 261 V~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~-~al~~~~~~~~~~~~~~~~-~~~~~g~v~~~~~~~~------ 331 (386)
T COG4175 261 VRDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPR-VALKLLRDEGREYGYAVDR-GNKFVGVVSIDSLVKA------ 331 (386)
T ss_pred HHHHHhcCChhheeeHHHhhcc-cccccccccccccc-hhhhhhhhccchhhHHHhc-cCceeeEEeccchhcc------
Confidence 4566677766777899999985 2222222222 223 5667777777666666663 4679999998886543
Q ss_pred ccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 292 ~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
.+..++..++.++++.+.+....+...+++ |+|
T Consensus 332 ----~~~~~~~~v~~d~~~~~~~~~~~~~~~p~a-Vvd 364 (386)
T COG4175 332 ----ALIDDVLTVDADTPLSEILARIRQAPCPVA-VVD 364 (386)
T ss_pred ----cccccccccCccchHHHHHHHHhcCCCcee-EEc
Confidence 346677889999999999999998887776 667
No 188
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.49 E-value=0.005 Score=50.57 Aligned_cols=49 Identities=20% Similarity=0.364 Sum_probs=43.1
Q ss_pred ccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 231 AMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 231 iMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
+|.+ ++.+++.++++. ++++.|.+++...+||+++ ++++|+++.+|+.+
T Consensus 56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~~--~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVDE--GRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEhhhhhc
Confidence 7864 577899999998 9999999999999999963 78999999999875
No 189
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=96.49 E-value=0.0037 Score=67.57 Aligned_cols=59 Identities=24% Similarity=0.312 Sum_probs=51.2
Q ss_pred ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCC-CCEEEEEEhhhhhccC
Q 013310 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNP-KNIIGLLLVKSLLTVR 286 (445)
Q Consensus 225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~-~~ivGiv~~kDll~~~ 286 (445)
+.+++|+|++ ++.++++++++. ++++.|.+++.+++||+|++. ++++|+|+.+|+++..
T Consensus 511 ~~~v~dim~~--~~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l 570 (574)
T PRK01862 511 DKTAADYAHT--PFPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY 570 (574)
T ss_pred cchHHHhccC--CCeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence 4679999975 577899999998 999999999999999998653 4799999999998754
No 190
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.47 E-value=0.0053 Score=64.33 Aligned_cols=55 Identities=15% Similarity=0.033 Sum_probs=46.6
Q ss_pred CccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCccc
Q 013310 291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK 347 (445)
Q Consensus 291 ~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~ 347 (445)
.+++++|.+++.++++++++.++++.|.+++.+.+||+|+.|++.|+| |.+|+++
T Consensus 335 ~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Giv--t~~dl~~ 389 (454)
T TIGR01137 335 ATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSV--TLRELLS 389 (454)
T ss_pred CCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEE--EHHHHHH
Confidence 678899989999999999999999999999989999999666666666 6666554
No 191
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.26 E-value=0.0064 Score=52.86 Aligned_cols=56 Identities=13% Similarity=0.344 Sum_probs=48.8
Q ss_pred cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
...++.++|.+ ++.+++.++++. ++++.|.+++++++||+++ ++++|+++.+|++.
T Consensus 87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~ 142 (143)
T cd04634 87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE 142 (143)
T ss_pred hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 45678899975 577899999998 9999999999999999986 78999999999864
No 192
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.22 E-value=0.005 Score=64.26 Aligned_cols=70 Identities=23% Similarity=0.278 Sum_probs=58.4
Q ss_pred HHHHHHHhhcC---cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC
Q 013310 213 ETTIISGALDL---TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP 287 (445)
Q Consensus 213 E~~~l~~~~~l---~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~ 287 (445)
++.+...++.= ...+|+++||. ++++++.++.+= ||+-.|.++++.++||+++ |+++|+|+..|+++...
T Consensus 198 ~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 198 RKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTLTDILRLFS 270 (610)
T ss_pred hHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHHhhC
Confidence 45556666542 34689999995 799999999997 9999999999999999986 79999999999987643
No 193
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.21 E-value=0.0064 Score=63.73 Aligned_cols=59 Identities=25% Similarity=0.432 Sum_probs=52.8
Q ss_pred ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR 286 (445)
Q Consensus 225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~ 286 (445)
+.+++++|++ .++++++++.++. ++++.|.+++...+||+|++ ++++|+|+.+|+++..
T Consensus 142 ~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 142 GKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRR 200 (450)
T ss_pred CCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhcc
Confidence 5689999984 3688999999998 99999999999999999875 7899999999999764
No 194
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.20 E-value=0.0066 Score=50.37 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=46.2
Q ss_pred cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCc---EEEeEeCCCCCEEEEEEhhhhhc
Q 013310 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHS---RVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s---~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
.+.+++++|.+ ++.++++++++. ++++.|.+++.. ..||++++ ++++|+|+.+|+++
T Consensus 59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~~-~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTEE-GRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEeeC-CeEEEEEEHHHHhc
Confidence 45679999975 577899999998 999999888753 45677765 79999999999874
No 195
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.01 E-value=0.012 Score=47.87 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=45.3
Q ss_pred ccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 227 ~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
++.++|.+ ++.+++.++++. ++++.|.+++...+||+++ ++++|+++.+|++.
T Consensus 53 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~ 105 (106)
T cd04638 53 QLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR 105 (106)
T ss_pred hHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 46777864 467789999998 9999999999999999985 58999999999864
No 196
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.00 E-value=0.022 Score=45.80 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=37.1
Q ss_pred CCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCccccc
Q 013310 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLN 349 (445)
Q Consensus 300 ~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i 349 (445)
++.++++++++.++++.|.+++.+.+||+|+.|++.|++ +.+|++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v--~~~~l~~~~ 49 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIV--TERDLLRAL 49 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEE--eHHHHHHHH
Confidence 456789999999999999999899999999656666666 555554333
No 197
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=95.88 E-value=0.02 Score=46.43 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=40.0
Q ss_pred CCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCccccc
Q 013310 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLN 349 (445)
Q Consensus 300 ~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i 349 (445)
++.++++++++.++++.|.+++.+.+||+|+ |+..|++ |.+|+.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v--~~~dl~~~~ 48 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSI--DESDLLDAL 48 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEE--eHHHHHHHH
Confidence 4567899999999999999999999999997 8888888 777776544
No 198
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=94.91 E-value=0.025 Score=58.83 Aligned_cols=61 Identities=15% Similarity=0.251 Sum_probs=53.7
Q ss_pred cCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310 222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR 286 (445)
Q Consensus 222 ~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~ 286 (445)
.-.+.+++++|.+ +++++++++..+ ++.+.+.+++....||+|++ ++++|+++..|++...
T Consensus 192 a~~~~~i~~im~~--~~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidvi 252 (451)
T COG2239 192 AEPDELLKDLMED--DVVSVLADDDQE-EVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDVI 252 (451)
T ss_pred CCcHhHHHHHhcc--cceeecccCCHH-HHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHHH
Confidence 4467789999986 488999999988 99999999999999999976 7999999999997653
No 199
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=94.21 E-value=0.048 Score=54.02 Aligned_cols=59 Identities=17% Similarity=0.348 Sum_probs=52.1
Q ss_pred cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR 286 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~ 286 (445)
++.+...+|+. +..++.+.+++. .+.+.|.-.++.-+||++++ .+++|+++.+|+++.+
T Consensus 247 ~~t~ieKVMtk--np~tv~~~tsVA-svaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~l 305 (432)
T COG4109 247 PSTTIEKVMTK--NPITVRAKTSVA-SVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKSL 305 (432)
T ss_pred CCccHHHHhcc--CCeeecccchHH-HHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHHH
Confidence 45678889985 578899999998 99999999999999999976 7899999999998764
No 200
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=93.27 E-value=0.021 Score=44.97 Aligned_cols=47 Identities=21% Similarity=0.164 Sum_probs=39.5
Q ss_pred ccCCCceEeeccCCCccccccccCCCCCC-CCCcccccc-ccCCCCC-Cc
Q 013310 367 DEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED-GE 413 (445)
Q Consensus 367 ~~~~~~~~v~~~~~i~~~~~~~~~~~~~~-~~tl~g~~~-~~~~~e~-g~ 413 (445)
+...+.|.++|++++.++++.+...+++. +.|++||++ .++++|. |.
T Consensus 2 ~~~~~~~~v~G~~~l~~l~~~~~~~l~~~~~~Tl~G~i~~~l~~iP~~Ge 51 (81)
T PF03471_consen 2 KLDDGTYIVSGSTPLDDLNELLGLDLPEEDYDTLGGLILEQLGRIPEVGE 51 (81)
T ss_dssp EETTSEEEEETTSBHHHHHHHHTS-TTTTTTSBHHHHHHHHHTSS--TTS
T ss_pred eEcCCEEEEEecCCHHHHHHHHCcCCCccchhhHHHHHHHHcCCCCCCCe
Confidence 34677899999999999999999998887 999999999 9999998 55
No 201
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=92.17 E-value=0.19 Score=51.19 Aligned_cols=56 Identities=21% Similarity=0.453 Sum_probs=48.4
Q ss_pred cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR 286 (445)
Q Consensus 226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~ 286 (445)
..+.+.|.+ .+.++++++++. +++..+.++++. +||+|++ ++++|+|+..+++..+
T Consensus 302 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~ 357 (363)
T TIGR01186 302 QGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDAL 357 (363)
T ss_pred Cchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHH
Confidence 357888864 567899999998 999999999999 9999875 8999999999998764
No 202
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=91.85 E-value=0.15 Score=51.47 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=51.2
Q ss_pred CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhcc
Q 013310 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (445)
Q Consensus 223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~ 285 (445)
=....+.++|+++. ++.+.+.+++ ++-+.+.++.-.++||++++ ++++-++...||.+.
T Consensus 168 ~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~~-gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 168 DNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDDK-GELVAMLSRTDLMKN 226 (503)
T ss_pred cccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceeccC-Cceeeeeehhhhhhh
Confidence 34567899999864 7888999998 99999999999999999976 899999999999874
No 203
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=89.74 E-value=1.5 Score=42.25 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=53.2
Q ss_pred eEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC-----------------CCccccccccC
Q 013310 238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-----------------ETPVSAVSIRR 300 (445)
Q Consensus 238 vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~-----------------~~~v~~im~~~ 300 (445)
++.|..|. + ||++.- +++.|.++ ++++-+=+..+++..+.++ ...+.+.|.+.
T Consensus 189 ivfVTHDi--d-EA~kLa-----dri~vm~~--G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~ 258 (309)
T COG1125 189 IVFVTHDI--D-EALKLA-----DRIAVMDA--GEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG 258 (309)
T ss_pred EEEEecCH--H-HHHhhh-----ceEEEecC--CeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence 55665554 5 877652 57888875 7899999988887654321 01233333222
Q ss_pred C----ceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 301 I----PRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 301 ~----~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
. -.++....-.+++..+...+...+||+|
T Consensus 259 ~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd 291 (309)
T COG1125 259 EPADGEPLLEGFVDRDALSDFLARGRSVLPVVD 291 (309)
T ss_pred ccccCCccccchhhHHHHHHHHhcCCceeEEEC
Confidence 1 1245555666788888899999999999
No 204
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=88.34 E-value=0.56 Score=48.44 Aligned_cols=57 Identities=18% Similarity=0.328 Sum_probs=47.4
Q ss_pred cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC
Q 013310 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP 287 (445)
Q Consensus 226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~ 287 (445)
..+++.|.+ +..+++.++++. +++..+.++.+. +||+|++ ++++|+|+..++++.+.
T Consensus 337 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 337 QGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRALD 393 (400)
T ss_pred Cchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence 457777754 467899999998 999999987766 9999865 89999999999988654
No 205
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=76.73 E-value=3.5 Score=44.20 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=45.7
Q ss_pred cccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhcc
Q 013310 228 AEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (445)
Q Consensus 228 V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~ 285 (445)
....|.| ..++++.++++. .+...++.-|.+.+.|+.+. ++++|+++.+|+.+.
T Consensus 692 l~p~~n~--sPytV~~~mSl~-k~~~lFR~lGLRhLlVv~~~-~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 692 LHPFMNP--SPYTVPETMSLA-KAFILFRQLGLRHLLVVPKT-NRVVGILTRKDLARY 745 (762)
T ss_pred cccccCC--CCcccCcccchH-HHHHHHHHhcceeEEEecCC-CceeEEEehhhhhhH
Confidence 3456665 567899999998 99999999999999999875 678999999999864
No 206
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=60.01 E-value=9.5 Score=39.15 Aligned_cols=54 Identities=7% Similarity=0.214 Sum_probs=41.6
Q ss_pred cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR 286 (445)
Q Consensus 226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~ 286 (445)
.++.+ +. +++.++++++++. +++..+.++++. +||+++ ++++|+|+..+++.++
T Consensus 326 ~~~~~-~~--~~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~--~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 326 QEVES-LE--AAPTVINPDTLMR-DVLAARHRTGGA-ILLVEN--GRIVGVIGDDNIYHAL 379 (382)
T ss_pred cchhh-hc--ccCcccCCCCcHH-HHHHHHhcCCCC-eEEeeC--CeEEEEEeHHHHHHHH
Confidence 34555 32 3577889999998 999988877654 788774 8999999999998754
No 207
>CHL00038 psbL photosystem II protein L
Probab=55.34 E-value=17 Score=23.91 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=12.7
Q ss_pred CccHHHHHHHHHHHHHHHHHHHH
Q 013310 30 FGSVWWFVYAGISCVLVLFAGIM 52 (445)
Q Consensus 30 ~~s~~w~~~~~i~~~ll~lsafF 52 (445)
+-|.+|-++++.++ .+++|.+|
T Consensus 15 RTSLy~GLLlifvl-~vlfssyf 36 (38)
T CHL00038 15 RTSLYWGLLLIFVL-AVLFSNYF 36 (38)
T ss_pred hhhHHHHHHHHHHH-HHHHHHHh
Confidence 46999976544444 44444443
No 208
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=53.28 E-value=10 Score=41.70 Aligned_cols=59 Identities=10% Similarity=0.132 Sum_probs=46.4
Q ss_pred cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCC-CCEEEEEEhhhhhcc
Q 013310 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNP-KNIIGLLLVKSLLTV 285 (445)
Q Consensus 224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~-~~ivGiv~~kDll~~ 285 (445)
..+.|+++|+. ++.++..+.|.. |..+.+.......+|++++.. .-++|.|..+.|...
T Consensus 586 h~v~VE~iMV~--dv~yI~k~~Ty~-elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~l 645 (931)
T KOG0476|consen 586 HTVKVEHIMVT--DVKYITKDTTYR-ELREALQTTTLRSFPLVESKESMILLGSVARRYLTAL 645 (931)
T ss_pred eEEEeeeeccc--cceeeeccCcHH-HHHHHHHhCccceeccccCcccceeeehhHHHHHHHH
Confidence 46789999984 799999999987 766666555599999998542 347899999998654
No 209
>PF14163 SieB: Superinfection exclusion protein B
Probab=51.62 E-value=71 Score=27.99 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcC
Q 013310 208 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG 259 (445)
Q Consensus 208 ~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~ 259 (445)
.++++|+..+...+.-++ ..++.+.++ .++..+.+.|
T Consensus 78 ~Lt~~EkavL~~~~~~~~-----------~~~~lp~~~----~~v~~L~~~g 114 (151)
T PF14163_consen 78 SLTPEEKAVLREFYIQGN-----------NTLTLPYNN----PAVKSLLQKG 114 (151)
T ss_pred hCCHHHHHHHHHHHHCCC-----------CeEEecCCC----HHHHHHHHCC
Confidence 588999998866654443 334555554 4445555555
No 210
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=51.45 E-value=27 Score=23.01 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=12.8
Q ss_pred CccHHHHHHHHHHHHHHHHHHHH
Q 013310 30 FGSVWWFVYAGISCVLVLFAGIM 52 (445)
Q Consensus 30 ~~s~~w~~~~~i~~~ll~lsafF 52 (445)
+-|.+|-++++.++. +++|..|
T Consensus 16 RTSLy~GlLlifvl~-vLFssYf 37 (39)
T PRK00753 16 RTSLYLGLLLVFVLG-ILFSSYF 37 (39)
T ss_pred hhhHHHHHHHHHHHH-HHHHhhc
Confidence 469999765554444 3444443
No 211
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=48.60 E-value=31 Score=22.61 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=12.5
Q ss_pred CccHHHHHHHHHHHHHHHHHHHH
Q 013310 30 FGSVWWFVYAGISCVLVLFAGIM 52 (445)
Q Consensus 30 ~~s~~w~~~~~i~~~ll~lsafF 52 (445)
+-|.+|.++++.++.+ ++|..|
T Consensus 14 RTSLY~GLllifvl~v-LFssyf 35 (37)
T PF02419_consen 14 RTSLYWGLLLIFVLAV-LFSSYF 35 (37)
T ss_dssp CCHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHhHHHHHHHHHHHHH-Hhhhhh
Confidence 4699997654444443 444443
No 212
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=46.05 E-value=28 Score=37.65 Aligned_cols=55 Identities=11% Similarity=0.196 Sum_probs=42.9
Q ss_pred cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhcc
Q 013310 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (445)
Q Consensus 226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~ 285 (445)
...+++|-+ .+.++...++.+ -.++.+++-|.+..-|.++ +++.|+|+.||+++.
T Consensus 639 ~~lk~il~~--tp~tv~d~tp~~-~v~~~F~~lg~~~~~v~~~--G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 639 LDLKDILDM--TPFTVTDLTPME-TVVDLFRKLGLRQILVTKN--GILLGIITKKDCLRH 693 (696)
T ss_pred cCceeeccC--CcccccccCcHH-HHHHHHHhhCceEEEEccC--CeeEeeeehHHHHHh
Confidence 345666643 356777888887 8889999999998888653 899999999999875
No 213
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=44.14 E-value=29 Score=38.36 Aligned_cols=39 Identities=10% Similarity=0.205 Sum_probs=36.0
Q ss_pred CccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310 291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (445)
Q Consensus 291 ~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd 329 (445)
..|+++|.+++.++..+++..|+-+.++....+..|+||
T Consensus 588 v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~ 626 (931)
T KOG0476|consen 588 VKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVE 626 (931)
T ss_pred EEeeeeccccceeeeccCcHHHHHHHHHhCccceecccc
Confidence 468999999999999999999999999888799999998
No 214
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=41.65 E-value=12 Score=38.70 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=51.3
Q ss_pred HHHHHHHHhhC-CCeEEEEEccCCCccCCCCCCCCCcccccccCCCCCCCCcccccccccCCCceEeeccCCC-----cc
Q 013310 310 LYDILNEFQKG-SSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPL-----SS 383 (445)
Q Consensus 310 l~~al~~m~~~-~~~~a~Vvde~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i-----~~ 383 (445)
+.++++.+.+. +++..+|.++ ++|++ |-+||. .+.+....+. +++|++.-+ .+
T Consensus 293 ~~~~~~~l~~~~~v~v~~v~n~---VagLl--Tg~Di~-~l~~~~~~d~---------------~liP~~~fldd~t~~~ 351 (404)
T TIGR03278 293 IREIFRALGGGDLVNVVPVKKD---IACLI--TEDDLE-ELDLSEVKET---------------VIIPGRAFVHDMVAEE 351 (404)
T ss_pred HHHHHHHHhcCceEEEEEecCc---ccccc--hHHHHH-HhcCCCCCCE---------------EEecCccccccccHHH
Confidence 34444444332 4777888775 99999 999999 7775544443 334443333 33
Q ss_pred ccccccCCCC--CCCCCccccccccCCCCCCceEEEeehhhHHHH
Q 013310 384 GSMNRLSSSQ--RSDSTTNGLIYASEDIEDGEVIGIITLEDVFEE 426 (445)
Q Consensus 384 ~~~~~~~~~~--~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~ 426 (445)
+...++.... +.++++- -+|++.|..|.+++++.
T Consensus 352 ~~~~l~~~v~v~~~~~~~~---------~~~~~~~~~~~~~~~~~ 387 (404)
T TIGR03278 352 ILKRDGVDRIVVRGPDRLT---------ADGEMSGGMTREEVLEF 387 (404)
T ss_pred HHHHhCCcEEEecCCceee---------ecceecccccHHHHHHH
Confidence 3333332211 1122222 47999999999999874
No 215
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=38.39 E-value=54 Score=31.92 Aligned_cols=59 Identities=24% Similarity=0.249 Sum_probs=39.9
Q ss_pred cccccccccccCCce--EEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310 224 TEKTAEEAMTPIEST--FSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (445)
Q Consensus 224 ~~~~V~diMtpr~~v--v~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~ 284 (445)
...++.+.|.+.... -.+....... +++..+...+.+.+||+|++ ++++|.++..+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ls~~~~~~~~~~~Vvd~~-g~~~G~vt~~~l~~ 307 (309)
T COG1125 247 SLVSVADAVRRGEPADGEPLLEGFVDR-DALSDFLARGRSVLPVVDED-GRPLGTVTRADLLD 307 (309)
T ss_pred chhhHHHhhcccccccCCccccchhhH-HHHHHHHhcCCceeEEECCC-CcEeeEEEHHHHhh
Confidence 455677777652211 1122223333 66777788899999999976 89999999999875
No 216
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=37.51 E-value=36 Score=36.15 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhcc
Q 013310 250 EAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (445)
Q Consensus 250 e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~ 285 (445)
...+.+.+.|-+-++|+++ +++.|++++||+.+.
T Consensus 417 ~~~~~vs~~GGTPL~V~~~--~~~~GVI~LkDivK~ 450 (681)
T COG2216 417 AAVDEVSRLGGTPLVVVEN--GRILGVIYLKDIVKP 450 (681)
T ss_pred HHHHHHHhcCCCceEEEEC--CEEEEEEEehhhcch
Confidence 3445666788889999986 699999999999863
No 217
>PF11131 PhrC_PhrF: Rap-phr extracellular signalling
Probab=36.83 E-value=30 Score=22.67 Aligned_cols=17 Identities=6% Similarity=0.100 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013310 43 CVLVLFAGIMSGLTLGL 59 (445)
Q Consensus 43 ~~ll~lsafFs~~E~Al 59 (445)
++|++.++.|.+++.|-
T Consensus 7 l~CLA~aavF~~a~va~ 23 (37)
T PF11131_consen 7 LICLAAAAVFTAAGVAN 23 (37)
T ss_pred HHHHHHHHHHHhhcccC
Confidence 44778899999998853
No 218
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=36.43 E-value=37 Score=34.02 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=38.0
Q ss_pred ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC
Q 013310 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP 287 (445)
Q Consensus 237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~ 287 (445)
++.+++.+++++ +.+..+.+.+ ..+||+|++ ++++|++..+.++.++.
T Consensus 336 ~~~~v~~d~~~~-~~~~~~~~~~-~p~aVvde~-~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 336 DVLTVDADTPLS-EILARIRQAP-CPVAVVDED-GRYVGIISRGELLEALA 383 (386)
T ss_pred cccccCccchHH-HHHHHHhcCC-CceeEEcCC-CcEEEEecHHHHHHHHh
Confidence 467888999987 8777776654 468889876 89999999999887643
No 219
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=34.59 E-value=1.6e+02 Score=22.62 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=6.8
Q ss_pred HHHHHHHHHH
Q 013310 45 LVLFAGIMSG 54 (445)
Q Consensus 45 ll~lsafFs~ 54 (445)
++++|||||-
T Consensus 33 lfiisa~lSw 42 (74)
T PF15086_consen 33 LFIISAVLSW 42 (74)
T ss_pred HHHHHHHHHH
Confidence 5667777764
No 220
>PF03563 Bunya_G2: Bunyavirus glycoprotein G2; InterPro: IPR005168 Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This entry represents the polyprotein region forming the G2 glycoprotein, which interacts with the IPR005167 from INTERPRO G1 glycoprotein [].
Probab=33.53 E-value=1.1e+02 Score=29.65 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=26.5
Q ss_pred HHHHHHHhhhccchhhHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013310 126 LSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWV 179 (445)
Q Consensus 126 ~~t~lilvfgEiiPK~la~~~~~~ia~~~a~~~~~~~~~~~P~~~~~~~~~~~~ 179 (445)
..++++.+|.-++-|+ ++.+++.=+|+|++++-.++.|+.
T Consensus 194 ~~~~~~~i~~~Iltkt--------------Yi~YlliPiF~P~~~~Yg~~ynk~ 233 (285)
T PF03563_consen 194 CLTLIIFIFLIILTKT--------------YICYLLIPIFYPIAYLYGWLYNKS 233 (285)
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666664 445556667889998888888874
No 221
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=29.60 E-value=82 Score=25.57 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=11.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013310 31 GSVWWFVYAGISCVLVLFAGIMSGLTL 57 (445)
Q Consensus 31 ~s~~w~~~~~i~~~ll~lsafFs~~E~ 57 (445)
.|=..+++.+++++++++|+=.|+.|.
T Consensus 2 aSK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 2 ASKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 344433333333344444433344333
No 222
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=28.43 E-value=58 Score=23.24 Aligned_cols=17 Identities=41% Similarity=0.968 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013310 35 WFVYAGISCVLVLFAGIMS 53 (445)
Q Consensus 35 w~~~~~i~~~ll~lsafFs 53 (445)
||+++.++ .+++||+.+
T Consensus 3 wWvY~vi~--gI~~S~ym~ 19 (52)
T PF14147_consen 3 WWVYFVIA--GIIFSGYMA 19 (52)
T ss_pred chHHHHHH--HHHHHHHHH
Confidence 44454433 445676643
No 223
>PF15284 PAGK: Phage-encoded virulence factor
Probab=27.23 E-value=77 Score=23.42 Aligned_cols=24 Identities=21% Similarity=0.081 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 013310 40 GISCVLVLFAGIMSGLTLGLMSLG 63 (445)
Q Consensus 40 ~i~~~ll~lsafFs~~E~Al~s~~ 63 (445)
++.+++++.++.||++-+|-=+.+
T Consensus 8 fL~l~~~LsA~~FSasamAa~~~~ 31 (61)
T PF15284_consen 8 FLALVFILSAAGFSASAMAADSSP 31 (61)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhCC
Confidence 455667778889999988755543
No 224
>TIGR00827 EIIC-GAT PTS system, galactitol-specific IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The only characterized member of this family of PTS transporters is the E. coli galactitol transporter. Gat family PTS systems typically have 3 components: IIA, IIB and IIC. This family is specific for the IIC component of the PTS Gat family.
Probab=26.21 E-value=3.3e+02 Score=28.28 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=41.4
Q ss_pred HHHHHHHhhhccchhhHHHhhhhH-HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcccccHHHHHHHH
Q 013310 126 LSVTFVLFFGEVIPQAICTRYGLA-VGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALV 196 (445)
Q Consensus 126 ~~t~lilvfgEiiPK~la~~~~~~-ia~~~a~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~s~eEl~~li 196 (445)
+..++.+.++|..-|.+-.-+... ++.. +.....+.|+.++++|+.+++=|.++...+.|.+++=+
T Consensus 144 ~~~i~~l~~aD~~a~~~q~~~glpGis~p-----h~~~~~~~pia~~~n~i~dkIPglnki~~d~~~i~kk~ 210 (407)
T TIGR00827 144 MHAAVALKVADWTAPMVSNFYELEGISIP-----TGSTISYAPGIVLVDAIIEKIPGIKHWNADADTIQRRF 210 (407)
T ss_pred HHHHHHHHHHHHhcHHHHHhcCCCCeeec-----chhhHhhhhHHHHHHHHHHhCcCcccCCCCHHHHhhhh
Confidence 334566788998888775533332 2211 22234456999999999999866666556666655533
No 225
>PF14044 NETI: NETI protein
Probab=21.85 E-value=93 Score=22.70 Aligned_cols=28 Identities=14% Similarity=0.482 Sum_probs=22.5
Q ss_pred EeeCCCCccHHHHHHHHHcCCcEE-----EeEeC
Q 013310 240 SLDVNSKLDWEAMGKILARGHSRV-----PVYSG 268 (445)
Q Consensus 240 ~v~~~~sl~~e~l~~~~~~~~s~~-----PV~~~ 268 (445)
.|..+.|++ +.++.|.+.||.-+ ||+.+
T Consensus 3 eV~enETI~-~CL~RM~~eGY~PvrR~EkPiF~e 35 (57)
T PF14044_consen 3 EVEENETIS-DCLARMKKEGYMPVRRIEKPIFKE 35 (57)
T ss_pred eccCCCcHH-HHHHHHHHcCCCceeeccccceEE
Confidence 467899999 99999999998643 66654
Done!