BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013311
(445 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G2K|A Chain A, Nmr Structure Of An N-Terminal Fragment Of The Eukaryotic
Initiation Factor 5 (Eif5)
Length = 170
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/136 (58%), Positives = 100/136 (73%), Gaps = 1/136 (0%)
Query: 13 DAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEK 72
D FYRYKMP++I K+EG+GNGIKT +VNMVD+AKAL RPP+Y TKYFG ELGAQ++FD K
Sbjct: 11 DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVK 70
Query: 73 TGTSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIIT-KTQMVNLKCAACGFVSE 131
+VNG+H+ KL +L+ FIKK+V C C NPETD+ + K Q + C ACG+
Sbjct: 71 NDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGM 130
Query: 132 VDMRDKLTTFILKNPP 147
+D KL TFILKNPP
Sbjct: 131 LDTHHKLCTFILKNPP 146
>pdb|2E9H|A Chain A, Solution Structure Of The Eif-5_eif-2b Domain From Human
Eukaryotic Translation Initiation Factor 5
Length = 157
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/144 (57%), Positives = 104/144 (72%), Gaps = 2/144 (1%)
Query: 5 NIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELG 64
N+ S SD FYRYKMP++I K+EG+GNGIKT +VNMVD+AKAL RPP+Y TKYFG ELG
Sbjct: 11 NVNRSVSDQ-FYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELG 69
Query: 65 AQSKFDEKTGTSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIIT-KTQMVNLKC 123
AQ++FD K +VNG+H+ KL +L+ FIKK+V C C NPETD+ + K Q + C
Sbjct: 70 AQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSC 129
Query: 124 AACGFVSEVDMRDKLTTFILKNPP 147
ACG+ +D KL TFILKNPP
Sbjct: 130 KACGYRGMLDTHHKLCTFILKNPP 153
>pdb|2D74|B Chain B, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|B Chain B, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 148
Score = 58.9 bits (141), Expect = 6e-09, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 7/111 (6%)
Query: 17 RYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTS 76
R+++P + IEG KT + N DIA AL R P + K+ E+ + +
Sbjct: 29 RFEVPGALVTIEGN----KTIIENFKDIADALNRDPQHLLKFLLREIATAGTLEGRR--V 82
Query: 77 LVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIITKTQMVNLKCAACG 127
++ G +A L+ +IK+YV C CG+P+T II + + LKC ACG
Sbjct: 83 VLQGRFTPYLIANKLKKYIKEYVICPVCGSPDTK-IIKRDRFHFLKCEACG 132
>pdb|1NEE|A Chain A, Structure Of Archaeal Translation Factor Aif2beta From
Methanobacterium Thermoautrophicum
Length = 138
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 7/111 (6%)
Query: 17 RYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTS 76
R+++PK + I+G +T + N ++A AL R P + K+ ELG + G +
Sbjct: 27 RFEVPKAYSVIQGN----RTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE--GGRA 80
Query: 77 LVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIITKTQMVNLKCAACG 127
++ G + +E+++ K+V C+ C P+T II + ++ LKC ACG
Sbjct: 81 ILQGKFTHFLINERIEDYVNKFVICHECNRPDTR-IIREGRISLLKCEACG 130
>pdb|2QMU|C Chain C, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|C Chain C, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 138
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 20 MPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVN 79
+P MI I GN T + N + + R KY EL A D+K G ++
Sbjct: 29 LPNMI--ILNIGNT--TIIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDK-GELVIQ 83
Query: 80 GAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIITKTQMVNLKCAACG 127
G + + L+E F+K YV+C C + +T I+ + + + C ACG
Sbjct: 84 GKFSSQVINTLMERFLKAYVECSTCKSLDT-ILKKEKKSWYIVCLACG 130
>pdb|3CW2|K Chain K, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|L Chain L, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|M Chain M, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|N Chain N, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus
Length = 139
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 20 MPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVN 79
+P MI I GN T + N + + R KY EL A D+K G ++
Sbjct: 30 LPNMI--ILNIGNT--TIIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDK-GELVIQ 84
Query: 80 GAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIITKTQMVNLKCAACG 127
G + + L+E F+K YV+C C + +T I+ + + + C ACG
Sbjct: 85 GKFSSQVINTLMERFLKAYVECSTCKSLDT-ILKKEKKSWYIVCLACG 131
>pdb|2NXU|A Chain A, Atomic Structure Of Translation Initiation Factor Aif2
Beta-Subunit From Archaebacteria Sulfolobus
Solfataricus: High Resolution Nmr In Solution
Length = 146
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 20 MPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVN 79
+P MI I GN T + N + + R KY EL A D+K G ++
Sbjct: 37 LPNMI--ILNIGN--TTIIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDK-GELVIQ 91
Query: 80 GAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIITKTQMVNLKCAACG 127
G + + L+E F+K YV+C C + +T I+ + + + C ACG
Sbjct: 92 GKFSSQVINTLMERFLKAYVECSTCKSLDT-ILKKEKKSWYIVCLACG 138
>pdb|2IU1|A Chain A, Crystal Structure Of Eif5 C-Terminal Domain
Length = 208
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 353 KKNYLAAATQEEGSQMVLLHSLESFCGKARPXXXXXXXXXXXXXYDNDLLEEEFILDWYQ 412
++++L + +Q LLH LE + YD DLLEEE I+ W +
Sbjct: 66 RRHFLRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSE 125
Query: 413 KG---LGGANKNSQVWKNAKPVIEWLQNA 438
K ++ A+P I+WL+ A
Sbjct: 126 KASKKYVSKELAKEIRVKAEPFIKWLKEA 154
>pdb|1PAQ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Eukaryotic
Initiation Factor 2b Epsilon
Length = 189
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 397 YDNDLLEEEFILDWYQKGLGGANKNSQVWKNAKPVIEWLQNAE 439
YDND++EE+ I W+ + + +V K +EWLQNA+
Sbjct: 140 YDNDIIEEDVIYKWWD-NVSTDPRYDEVKKLTVKWVEWLQNAD 181
>pdb|1K81|A Chain A, Nmr Structure Of The Zinc-Ribbon Domain Within Translation
Initiation Factor 2 Subunit Beta
Length = 36
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 101 CYGCGNPETDIIITKTQMVNLKCAACGFVSEVDM 134
C CG P+T II + ++ LKC ACG + + M
Sbjct: 3 CRECGKPDTKII-KEGRVHLLKCMACGAIRPIRM 35
>pdb|2F0Y|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And Hydantoin
Derivative
pdb|3E37|A Chain A, Protein Farnesyltransferase Complexed With Bisubstrate
Ethylenediamine Scaffold Inhibitor 5
Length = 379
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 420 KNSQVWKNAKPVIEWLQNAESETE 443
KN QVW + + ++EWL++ E E
Sbjct: 164 KNYQVWHHRRVLVEWLRDPSQELE 187
>pdb|1O1R|A Chain A, Structure Of Fpt Bound To Ggpp
pdb|1O1S|A Chain A, Structure Of Fpt Bound To Isoprenoid Analog 3b
pdb|1O1T|A Chain A, Structure Of Fpt Bound To The Cvim-Fpp Product
Length = 380
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 420 KNSQVWKNAKPVIEWLQNAESETE 443
KN QVW + + ++EWL++ E E
Sbjct: 167 KNYQVWHHRRVLVEWLKDPSQELE 190
>pdb|1JCQ|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
pdb|1LD7|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1MZC|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 33a
pdb|1SA4|A Chain A, Human Protein Farnesyltransferase Complexed With Fpp And
R115777
pdb|1S63|A Chain A, Human Protein Farnesyltransferase Complexed With L-778,123
And Fpp
pdb|1TN6|A Chain A, Protein Farnesyltransferase Complexed With A Rap2a Peptide
Substrate And A Fpp Analog At 1.8a Resolution
pdb|2H6F|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
Ddptasacvls Peptide Product At 1.5a Resolution
pdb|2H6G|A Chain A, W102t Protein Farnesyltransferase Mutant Complexed With A
Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
Resolution
pdb|2H6H|A Chain A, Y365f Protein Farnesyltransferase Mutant Complexed With A
Farnesylated Ddptasacvls Peptide Product At 1.8a
pdb|2H6I|A Chain A, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
Product At 3.0a
pdb|2IEJ|A Chain A, Human Protein Farnesyltransferase Complexed With Inhibitor
Compound Stn-48 And Fpp Analog At 1.8a Resolution
Length = 382
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 420 KNSQVWKNAKPVIEWLQNAESETE 443
KN QVW + + ++EWL++ E E
Sbjct: 164 KNYQVWHHRRVLVEWLRDPSQELE 187
>pdb|3PZ4|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Bms3 And Lipid Substrate Fpp
Length = 379
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 420 KNSQVWKNAKPVIEWLQNAESETE 443
KN QVW + + ++EWL++ E E
Sbjct: 166 KNYQVWHHRRVLVEWLKDPSQELE 189
>pdb|1O5M|A Chain A, Structure Of Fpt Bound To The Inhibitor Sch66336
pdb|2ZIR|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Benzofuran Inhibitor And Fpp
pdb|2ZIS|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Bezoruran Inhibitor And Fpp
pdb|3KSL|A Chain A, Structure Of Fpt Bound To Datfp-Dh-Gpp
pdb|3KSQ|A Chain A, Discovery Of C-Imidazole Azaheptapyridine Fpt Inhibitors
Length = 377
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 420 KNSQVWKNAKPVIEWLQNAESETE 443
KN QVW + + ++EWL++ E E
Sbjct: 164 KNYQVWHHRRVLVEWLKDPSQELE 187
>pdb|2R2L|A Chain A, Structure Of Farnesyl Protein Transferase Bound To Pb-93
Length = 315
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 420 KNSQVWKNAKPVIEWLQNAESETE 443
KN QVW + + ++EWL++ E E
Sbjct: 111 KNYQVWHHRRVLVEWLKDPSQELE 134
>pdb|1FT1|A Chain A, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
pdb|1FPP|A Chain A, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1D8D|A Chain A, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1D8E|A Chain A, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1JCR|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1KZO|A Chain A, Protein Farnesyltransferase Complexed With Farnesylated
K-Ras4b Peptide Product And Farnesyl Diphosphate
Substrate Bound Simultaneously
pdb|1KZP|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
K-Ras4b Peptide Product
pdb|1N4P|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4Q|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4R|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4S|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1SA5|A Chain A, Rat Protein Farnesyltransferase Complexed With Fpp And
Bms- 214662
pdb|1S64|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1TN7|A Chain A, Protein Farnesyltransferase Complexed With A Tc21 Peptide
Substrate And A Fpp Analog At 2.3a Resolution
pdb|1TN8|A Chain A, Protein Farnesyltransferase Complexed With A H-Ras Peptide
Substrate And A Fpp Analog At 2.25a Resolution
pdb|1TNB|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNO|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNU|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNY|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNZ|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|3DPY|A Chain A, Protein Farnesyltransferase Complexed With Fpp And Caged
Tkcvim Substrate
pdb|3E30|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylene Diamine Inhibitor 4
pdb|3E32|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 2
pdb|3E33|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 7
pdb|3E34|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine-Scaffold Inhibitor 10
pdb|3EU5|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Biotingpp
pdb|3EUV|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10, W102t, Y154t) In Complex With Biotingpp
pdb|4GTM|A Chain A, Ftase In Complex With Bms Analogue 11
pdb|4GTO|A Chain A, Ftase In Complex With Bms Analogue 14
pdb|4GTP|A Chain A, Ftase In Complex With Bms Analogue 16
pdb|4GTQ|A Chain A, Ftase In Complex With Bms Analogue 12
pdb|4GTR|A Chain A, Ftase In Complex With Bms Analogue 13
Length = 377
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 420 KNSQVWKNAKPVIEWLQNAESETE 443
KN QVW + + ++EWL++ E E
Sbjct: 164 KNYQVWHHRRVLVEWLKDPSQELE 187
>pdb|1N95|A Chain A, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase:
Glycine, Phenylalanine And Histidine Derivatives
pdb|1N9A|A Chain A, Farnesyltransferase Complex With Tetrahydropyridine
Inhibitors
pdb|1NI1|A Chain A, Imidazole And Cyanophenyl Farnesyl Transferase Inhibitors
Length = 315
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 420 KNSQVWKNAKPVIEWLQNAESETE 443
KN QVW + + ++EWL++ E E
Sbjct: 110 KNYQVWHHRRVLVEWLKDPSQELE 133
>pdb|1QBQ|A Chain A, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid
Length = 333
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 420 KNSQVWKNAKPVIEWLQNAESETE 443
KN QVW + + ++EWL++ E E
Sbjct: 120 KNYQVWHHRRVLVEWLKDPSQELE 143
>pdb|1FT2|A Chain A, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
pdb|1N94|A Chain A, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase:
Glycine, Phenylalanine And Histidine Derivates
pdb|1X81|A Chain A, Farnesyl Transferase Structure Of Jansen Compound
Length = 315
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 420 KNSQVWKNAKPVIEWLQNAESETE 443
KN QVW + + ++EWL++ E E
Sbjct: 110 KNYQVWHHRRVLVEWLKDPSQELE 133
>pdb|2BED|A Chain A, Structure Of Fpt Bound To Inhibitor Sch207736
Length = 313
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 420 KNSQVWKNAKPVIEWLQNAESETE 443
KN QVW + + ++EWL++ E E
Sbjct: 111 KNYQVWHHRRVLVEWLKDPSQELE 134
>pdb|1NL4|A Chain A, Crystal Structure Of Rat Farnesyl Transferase In Complex
With A Potent Biphenyl Inhibitor
Length = 312
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 420 KNSQVWKNAKPVIEWLQNAESETE 443
KN QVW + + ++EWL++ E E
Sbjct: 110 KNYQVWHHRRVLVEWLKDPSQELE 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.129 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,718,972
Number of Sequences: 62578
Number of extensions: 381683
Number of successful extensions: 556
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 531
Number of HSP's gapped (non-prelim): 26
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)