Query 013311
Match_columns 445
No_of_seqs 282 out of 735
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 08:12:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2g2k_A EIF-5, eukaryotic trans 100.0 3.5E-65 1.2E-69 466.5 14.6 150 1-152 1-151 (170)
2 2e9h_A EIF-5, eukaryotic trans 100.0 8.9E-64 3E-68 452.4 15.5 147 1-149 8-155 (157)
3 1nee_A EIF-2-beta, probable tr 100.0 5.8E-46 2E-50 330.4 9.5 115 13-134 23-137 (138)
4 2d74_B Translation initiation 100.0 9E-46 3.1E-50 332.3 10.6 116 13-135 25-140 (148)
5 3cw2_K Translation initiation 100.0 9.8E-47 3.4E-51 335.8 -8.9 119 10-134 20-138 (139)
6 3jui_A Translation initiation 100.0 4.1E-29 1.4E-33 232.5 13.8 149 296-445 15-181 (182)
7 2ful_A EIF-5, eukaryotic trans 100.0 4.6E-29 1.6E-33 231.2 12.7 146 295-444 12-166 (177)
8 1paq_A Translation initiation 100.0 1.5E-28 5.1E-33 230.0 15.0 149 296-445 23-187 (189)
9 2iu1_A EIF5, eukaryotic transl 99.9 1.4E-27 4.7E-32 226.4 15.5 145 296-444 9-160 (208)
10 3d3m_A Eukaryotic translation 99.9 2.4E-23 8.1E-28 191.2 15.3 113 325-438 34-168 (168)
11 3l6a_A Eukaryotic translation 99.8 1E-19 3.5E-24 185.8 14.3 142 295-438 196-364 (364)
12 1k8b_A EIF-2-beta, probable tr 99.8 1.3E-20 4.5E-25 140.6 5.6 52 24-81 1-52 (52)
13 1ug3_A EIF4GI, eukaryotic prot 99.4 8E-13 2.7E-17 133.3 9.9 119 295-414 207-335 (339)
14 1k81_A EIF-2-beta, probable tr 99.4 1.5E-13 5.2E-18 95.0 2.7 35 99-134 1-35 (36)
15 1h2v_C 80 kDa nuclear CAP bind 94.5 0.42 1.4E-05 53.0 14.4 116 294-413 476-606 (771)
16 2ogh_A Eukaryotic translation 90.4 1.1 3.8E-05 37.7 8.3 86 1-95 1-97 (108)
17 1qyp_A RNA polymerase II; tran 84.1 0.78 2.7E-05 33.9 3.2 33 98-130 15-53 (57)
18 1tfi_A Transcriptional elongat 84.0 0.95 3.3E-05 32.9 3.6 33 98-130 9-47 (50)
19 2pk7_A Uncharacterized protein 82.4 0.41 1.4E-05 37.2 1.1 35 95-133 5-39 (69)
20 1pft_A TFIIB, PFTFIIBN; N-term 81.0 0.75 2.6E-05 32.9 2.1 31 98-131 5-35 (50)
21 1dl6_A Transcription factor II 78.0 0.96 3.3E-05 33.8 1.9 28 99-129 12-39 (58)
22 4h62_V Mediator of RNA polymer 75.4 1.5 5.3E-05 27.8 2.0 20 81-100 8-27 (31)
23 2hf1_A Tetraacyldisaccharide-1 74.3 0.43 1.5E-05 37.0 -1.0 33 97-133 7-39 (68)
24 2jr6_A UPF0434 protein NMA0874 73.7 1.1 3.8E-05 34.7 1.2 33 97-133 7-39 (68)
25 1twf_I B12.6, DNA-directed RNA 73.0 1.2 4E-05 38.1 1.4 40 99-138 73-118 (122)
26 2if1_A EIF1, SUI1; translation 72.2 4.4 0.00015 35.0 4.8 67 21-93 42-113 (126)
27 2vut_I AREA, nitrogen regulato 71.0 0.77 2.6E-05 32.4 -0.2 29 100-129 3-31 (43)
28 2js4_A UPF0434 protein BB2007; 71.0 1.7 5.9E-05 33.7 1.8 33 97-133 7-39 (70)
29 3po3_S Transcription elongatio 69.1 1.4 4.9E-05 40.1 1.1 33 98-130 137-175 (178)
30 4bbr_M Transcription initiatio 68.8 2 7E-05 42.9 2.2 42 99-141 22-66 (345)
31 1gnf_A Transcription factor GA 68.5 0.83 2.8E-05 32.7 -0.5 30 99-129 5-34 (46)
32 1wii_A Hypothetical UPF0222 pr 68.3 4 0.00014 32.9 3.4 37 96-132 21-59 (85)
33 2lo3_A SAGA-associated factor 67.8 1.7 6E-05 30.5 1.0 28 106-133 1-30 (44)
34 3h0g_I DNA-directed RNA polyme 67.4 3.1 0.00011 35.0 2.8 32 99-130 73-110 (113)
35 2fiy_A Protein FDHE homolog; F 66.1 2.7 9.3E-05 41.6 2.5 37 97-133 181-221 (309)
36 3k1f_M Transcription initiatio 66.1 2.7 9.1E-05 38.5 2.2 30 99-129 22-51 (197)
37 1gh9_A 8.3 kDa protein (gene M 65.4 2.3 8E-05 33.1 1.5 34 99-138 5-38 (71)
38 2jny_A Uncharacterized BCR; st 64.6 1.4 4.9E-05 33.9 0.1 38 92-133 4-41 (67)
39 1d0q_A DNA primase; zinc-bindi 63.9 7.2 0.00025 32.0 4.3 33 99-132 38-70 (103)
40 3cc2_Z 50S ribosomal protein L 63.6 6.7 0.00023 33.4 4.1 80 39-130 9-88 (116)
41 1pqv_S STP-alpha, transcriptio 60.0 4.3 0.00015 40.0 2.7 33 98-130 268-306 (309)
42 3dfx_A Trans-acting T-cell-spe 59.4 1.2 4.1E-05 34.0 -1.2 30 99-129 8-37 (63)
43 2kae_A GATA-type transcription 59.1 1.7 5.7E-05 34.0 -0.4 30 98-129 8-39 (71)
44 2au3_A DNA primase; zinc ribbo 58.8 6.3 0.00021 40.0 3.7 32 100-132 36-67 (407)
45 1qxf_A GR2, 30S ribosomal prot 57.9 2.3 8E-05 32.7 0.2 30 98-130 7-36 (66)
46 3a43_A HYPD, hydrogenase nicke 57.5 6.8 0.00023 34.1 3.2 16 98-113 107-122 (139)
47 2xzm_F EIF1; ribosome, transla 55.7 29 0.001 28.6 6.6 68 20-93 16-88 (101)
48 3c5t_B Exendin-4, exenatide; l 54.5 4.9 0.00017 26.4 1.3 13 426-438 9-21 (31)
49 1vk6_A NADH pyrophosphatase; 1 54.2 7.5 0.00026 37.3 3.2 41 87-131 96-136 (269)
50 3k7a_M Transcription initiatio 54.2 3.5 0.00012 41.0 0.9 31 99-130 22-52 (345)
51 4gat_A Nitrogen regulatory pro 53.6 2.1 7.2E-05 32.9 -0.7 31 99-130 10-40 (66)
52 3j20_Y 30S ribosomal protein S 52.5 7.4 0.00025 28.1 2.2 30 97-130 18-47 (50)
53 3j20_W 30S ribosomal protein S 51.2 3.6 0.00012 31.4 0.3 29 98-129 15-43 (63)
54 1nui_A DNA primase/helicase; z 50.6 8.9 0.0003 36.0 3.1 30 98-130 14-43 (255)
55 1x0t_A Ribonuclease P protein 49.9 10 0.00036 32.1 3.1 34 100-133 67-107 (120)
56 2kpi_A Uncharacterized protein 48.7 3.8 0.00013 30.4 0.1 33 95-133 7-41 (56)
57 2k3r_A Ribonuclease P protein 47.1 11 0.00038 32.2 2.8 34 100-133 62-102 (123)
58 2xzm_6 RPS27E; ribosome, trans 45.5 4.3 0.00015 32.5 -0.1 29 98-129 32-60 (81)
59 3u5c_b RP61, YS20, 40S ribosom 45.4 6 0.0002 31.7 0.7 30 98-130 34-63 (82)
60 3qt1_I DNA-directed RNA polyme 44.3 4.7 0.00016 35.0 0.0 32 99-130 93-130 (133)
61 3h0g_I DNA-directed RNA polyme 44.1 8.1 0.00028 32.4 1.4 35 99-134 5-40 (113)
62 1vq8_Z 50S ribosomal protein L 43.7 9.2 0.00031 30.6 1.6 30 98-131 27-56 (83)
63 1ltl_A DNA replication initiat 42.1 7.8 0.00027 37.3 1.2 108 33-142 40-177 (279)
64 3cng_A Nudix hydrolase; struct 41.4 9.6 0.00033 33.8 1.6 33 98-130 3-35 (189)
65 1x3z_A Peptide: N-glycanase; h 41.0 17 0.00059 36.2 3.5 50 83-132 98-167 (335)
66 3ga8_A HTH-type transcriptiona 40.8 18 0.00062 27.9 2.9 33 100-132 4-48 (78)
67 2j9u_B VPS36, vacuolar protein 39.9 10 0.00034 29.9 1.2 31 99-137 18-57 (76)
68 1twf_I B12.6, DNA-directed RNA 39.7 20 0.00068 30.4 3.2 36 98-133 4-39 (122)
69 3iz6_X 40S ribosomal protein S 38.2 6 0.0002 31.9 -0.3 29 99-130 37-65 (86)
70 2kdx_A HYPA, hydrogenase/ureas 37.8 21 0.00073 29.8 3.1 16 98-113 89-105 (119)
71 3mhs_E SAGA-associated factor 37.5 8.4 0.00029 31.7 0.5 27 106-132 59-87 (96)
72 2g49_C Glucagon preproprotein; 37.5 13 0.00046 24.0 1.3 12 426-437 17-28 (29)
73 2l63_A GLP-2, glucagon-like pe 36.2 16 0.00054 24.3 1.6 13 426-438 17-29 (33)
74 1uw4_B UPF2, regulator of nons 36.1 1.3E+02 0.0043 28.7 8.6 109 295-410 3-125 (248)
75 3o9x_A Uncharacterized HTH-typ 34.9 21 0.00073 29.6 2.7 33 100-132 4-48 (133)
76 1t5q_A Gastric inhibitory poly 34.8 17 0.0006 23.6 1.6 12 426-437 17-28 (30)
77 2qkd_A Zinc finger protein ZPR 33.9 22 0.00074 36.4 3.0 37 15-51 86-124 (404)
78 1jrj_A Exendin-4; Trp-CAGE, GL 33.7 17 0.00057 25.1 1.4 13 426-438 17-29 (39)
79 3iol_B Glucagon; receptor-liga 32.0 20 0.0007 23.3 1.6 12 426-437 17-28 (31)
80 3j21_g 50S ribosomal protein L 31.9 10 0.00035 27.6 0.1 28 94-129 10-37 (51)
81 2b4n_A Gastric inhibitory poly 31.2 19 0.00065 25.2 1.4 14 426-439 17-30 (42)
82 3iz5_m 60S ribosomal protein L 30.7 26 0.00088 28.6 2.3 41 86-131 25-65 (92)
83 3qt1_I DNA-directed RNA polyme 30.6 17 0.00058 31.5 1.3 37 98-134 24-60 (133)
84 2apo_B Ribosome biogenesis pro 30.3 19 0.00066 27.1 1.4 26 98-133 6-31 (60)
85 4hc9_A Trans-acting T-cell-spe 29.4 9.6 0.00033 32.2 -0.5 30 99-129 6-35 (115)
86 2jrp_A Putative cytoplasmic pr 29.0 33 0.0011 27.3 2.6 9 99-107 3-11 (81)
87 1d1r_A Hypothetical 11.4 KD pr 29.0 35 0.0012 28.9 3.0 65 23-93 33-99 (116)
88 4hc9_A Trans-acting T-cell-spe 28.1 10 0.00035 32.0 -0.5 30 99-129 60-89 (115)
89 2zjr_Z 50S ribosomal protein L 28.0 17 0.00057 27.3 0.7 25 96-129 28-52 (60)
90 1twf_L ABC10-alpha, DNA-direct 27.1 15 0.00051 28.4 0.3 34 98-136 28-61 (70)
91 1d4u_A Nucleotide excision rep 25.9 10 0.00036 31.9 -0.9 49 97-146 4-56 (111)
92 2aus_D NOP10, ribosome biogene 24.9 25 0.00084 26.5 1.1 26 98-133 5-30 (60)
93 3j21_i 50S ribosomal protein L 24.4 28 0.00097 27.8 1.5 27 99-129 36-62 (83)
94 3h0g_L DNA-directed RNA polyme 24.4 31 0.0011 26.2 1.6 34 98-136 21-54 (63)
95 2ion_A PDCD4, programmed cell 24.3 3.4E+02 0.012 23.4 11.0 107 301-409 14-127 (152)
96 2qkd_A Zinc finger protein ZPR 24.2 27 0.00094 35.7 1.7 33 99-131 13-52 (404)
97 2jne_A Hypothetical protein YF 23.5 48 0.0016 27.4 2.7 27 97-129 31-57 (101)
98 4esj_A Type-2 restriction enzy 22.8 44 0.0015 31.9 2.7 55 81-136 16-72 (257)
99 2k5r_A Uncharacterized protein 22.3 11 0.00036 31.2 -1.4 15 119-133 52-66 (97)
100 3lcz_A YCZA, inhibitor of trap 22.2 44 0.0015 24.2 2.0 38 98-143 9-48 (53)
101 3mn2_A Probable ARAC family tr 22.0 63 0.0021 25.5 3.2 29 39-67 19-47 (108)
102 2nsz_A Programmed cell death p 21.8 3.5E+02 0.012 22.5 11.0 105 301-407 12-123 (129)
103 3lsg_A Two-component response 21.7 65 0.0022 25.2 3.2 29 39-67 20-48 (103)
104 2rrh_A VIP peptides; peptide h 21.3 39 0.0013 21.7 1.4 12 426-437 17-28 (29)
105 2k4x_A 30S ribosomal protein S 21.1 61 0.0021 23.6 2.6 29 98-130 18-46 (55)
106 2jox_A Churchill protein; zinc 20.6 64 0.0022 26.7 2.9 36 94-129 22-66 (106)
No 1
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=100.00 E-value=3.5e-65 Score=466.46 Aligned_cols=150 Identities=54% Similarity=0.973 Sum_probs=145.5
Q ss_pred CceeccCCCCCCCCcccccCCCceEEEeccCCCceEEEechHHHHHHhCCCchHHHHHHHHhhcCcccccCCCCeEEEEe
Q 013311 1 MALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVNG 80 (445)
Q Consensus 1 Ma~ini~~~~~~d~~~Rykmp~~~~k~eG~gng~kT~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~~~ii~G 80 (445)
|+ ||| +|+++||||||+||+|++++||+||||||+|+||.+||++|+|||+||+|||++||||+|+||++++||||||
T Consensus 1 ~~-~Ni-~~~~~D~~~RykmP~~~v~~EG~gnG~KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~id~~~~rliinG 78 (170)
T 2g2k_A 1 LS-VNV-NRSVMDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNG 78 (170)
T ss_dssp CC-SCC-CSSCCSCCSSCCCCCCCCEEESCTTTCEEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEECTTTCCEEEEB
T ss_pred Cc-ccc-cCCCCCccccccCCCCeEEEeccCCccEEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceeecCCCCEEEEEe
Confidence 65 999 9999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred ecCHHHHHHHHHHHHhhccccCCCCCCCceEEEe-cCCeeeeeccccCCcccccchhhhhHHHhcCCCCcccc
Q 013311 81 AHDTAKLAGLLENFIKKYVQCYGCGNPETDIIIT-KTQMVNLKCAACGFVSEVDMRDKLTTFILKNPPVQKKT 152 (445)
Q Consensus 81 ~~~~~~l~~~l~~fi~~fVlC~~C~~peT~l~~~-k~~~~~~~C~aCG~~~~v~~~~kl~~~i~k~pP~~~~~ 152 (445)
+|++.+||++|++||++||+|++|+||||.|+++ ++++++++|.|||++++|+++|||+|||+||||+.++.
T Consensus 79 ~~~~~~i~~~L~~yI~~YVlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~V~~~~kl~t~i~knpp~~~~~ 151 (170)
T 2g2k_A 79 SHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFILKNPPENSDS 151 (170)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCCSCSSSSHHHHHHTSCCCCCSS
T ss_pred eeCHHHHHHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccccCCccccccccceeeeeeecCCCCCcc
Confidence 9999999999999999999999999999999996 68999999999999999999999999999999986653
No 2
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=8.9e-64 Score=452.36 Aligned_cols=147 Identities=56% Similarity=1.000 Sum_probs=143.4
Q ss_pred CceeccCCCCCCCCcccccCCCceEEEeccCCCceEEEechHHHHHHhCCCchHHHHHHHHhhcCcccccCCCCeEEEEe
Q 013311 1 MALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVNG 80 (445)
Q Consensus 1 Ma~ini~~~~~~d~~~Rykmp~~~~k~eG~gng~kT~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~~~ii~G 80 (445)
|| ||| +|+++||||||+||+|++++||+||||||+|+||.+||++|+|+|+||+|||++||||+|+||++++||||||
T Consensus 8 m~-~nI-~r~~~d~~~RykmP~~~v~~eG~gnG~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELGt~g~id~~~~rlii~G 85 (157)
T 2e9h_A 8 MS-VNV-NRSVSDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNG 85 (157)
T ss_dssp CE-EES-STTCCCSCCCCEEECCCEEECSSSSSCEEEETTHHHHHHHTTSCTHHHHHHHHHHHTCCEEEETTTTEEEEEB
T ss_pred cE-Eec-cCCCCCcccceecCCCeEEEeccCCccEEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecCCCCEEEEEe
Confidence 77 999 9999999999999999999999999999999999999999999999999999999999999997799999999
Q ss_pred ecCHHHHHHHHHHHHhhccccCCCCCCCceEEEe-cCCeeeeeccccCCcccccchhhhhHHHhcCCCCc
Q 013311 81 AHDTAKLAGLLENFIKKYVQCYGCGNPETDIIIT-KTQMVNLKCAACGFVSEVDMRDKLTTFILKNPPVQ 149 (445)
Q Consensus 81 ~~~~~~l~~~l~~fi~~fVlC~~C~~peT~l~~~-k~~~~~~~C~aCG~~~~v~~~~kl~~~i~k~pP~~ 149 (445)
+|++.+||++|++||++||+|++|+||||.|+++ ++++++++|.|||++++|+++|||++||+||||+.
T Consensus 86 ~~~~~~i~~~L~~yI~~YVlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~~V~~~~Kl~~~i~knpp~~ 155 (157)
T 2e9h_A 86 SHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFILKNPPEN 155 (157)
T ss_dssp CCCHHHHHHHHHHHHHHTTSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEECCCCSSHHHHHHHSCCCC
T ss_pred eeCHHHHHHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccCCCCCCcccchhhhhhhhhcCCCCC
Confidence 9999999999999999999999999999999985 68999999999999999999999999999999964
No 3
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=100.00 E-value=5.8e-46 Score=330.44 Aligned_cols=115 Identities=29% Similarity=0.569 Sum_probs=111.8
Q ss_pred CCcccccCCCceEEEeccCCCceEEEechHHHHHHhCCCchHHHHHHHHhhcCcccccCCCCeEEEEeecCHHHHHHHHH
Q 013311 13 DAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVNGAHDTAKLAGLLE 92 (445)
Q Consensus 13 d~~~Rykmp~~~~k~eG~gng~kT~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~~~ii~G~~~~~~l~~~l~ 92 (445)
...|||+||+|++++||+ ||+|+||.+||++|||+|+||+|||++||||+|+|| ++||||||+|++.+||++|+
T Consensus 23 ~~~~R~~mp~~~v~~eG~----kTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id--~~rlii~G~~~~~~i~~~L~ 96 (138)
T 1nee_A 23 FETKRFEVPKAYSVIQGN----RTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE--GGRAILQGKFTHFLINERIE 96 (138)
T ss_dssp CCCCCCCCSCCCCCEETT----EEEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB--TTTEEEESSCSSSHHHHHHH
T ss_pred CCccceecCCCeEEEECC----cEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec--CCEEEEEeeeCHHHHHHHHH
Confidence 557999999999999999 999999999999999999999999999999999999 79999999999999999999
Q ss_pred HHHhhccccCCCCCCCceEEEecCCeeeeeccccCCcccccc
Q 013311 93 NFIKKYVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVDM 134 (445)
Q Consensus 93 ~fi~~fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~~ 134 (445)
+||++||+|++|+||||.|++ ++++++++|.|||++++|++
T Consensus 97 ~yI~~yVlC~~C~sPdT~l~k-~~r~~~l~C~ACGa~~~V~~ 137 (138)
T 1nee_A 97 DYVNKFVICHECNRPDTRIIR-EGRISLLKCEACGAKAPLKN 137 (138)
T ss_dssp HHHTHHHHHTCCSSCSSCCEE-ETTTTEEECSTTSCCCCSCC
T ss_pred HHHhhEEECCCCCCcCcEEEE-cCCeEEEEccCCCCCcccCC
Confidence 999999999999999999999 88999999999999999975
No 4
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=100.00 E-value=9e-46 Score=332.31 Aligned_cols=116 Identities=32% Similarity=0.566 Sum_probs=112.3
Q ss_pred CCcccccCCCceEEEeccCCCceEEEechHHHHHHhCCCchHHHHHHHHhhcCcccccCCCCeEEEEeecCHHHHHHHHH
Q 013311 13 DAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVNGAHDTAKLAGLLE 92 (445)
Q Consensus 13 d~~~Rykmp~~~~k~eG~gng~kT~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~~~ii~G~~~~~~l~~~l~ 92 (445)
+..|||+||+|++++||+ ||+|+||.+||++|+|||+||+|||++||||+|+|| ++||||||+|++++||++|+
T Consensus 25 ~~~~RykmP~~~v~~eGk----KTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id--~~rlii~G~~~~~~i~~~L~ 98 (148)
T 2d74_B 25 HHKSRFEVPGALVTIEGN----KTIIENFKDIADALNRDPQHLLKFLLREIATAGTLE--GRRVVLQGRFTPYLIANKLK 98 (148)
T ss_dssp SSSCCCCCCCCCEEEETT----EEEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEE--TTEEEESSCCCHHHHHHHHH
T ss_pred CCCCceecCCCeEEEecC----eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec--CCEEEEEeeeCHHHHHHHHH
Confidence 556999999999999998 999999999999999999999999999999999999 79999999999999999999
Q ss_pred HHHhhccccCCCCCCCceEEEecCCeeeeeccccCCcccccch
Q 013311 93 NFIKKYVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVDMR 135 (445)
Q Consensus 93 ~fi~~fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~~~ 135 (445)
+||++||+|++|+||||.|++ ++++++++|.|||++++|+++
T Consensus 99 ~yI~~yVlC~~C~sPdT~L~k-~~r~~~l~C~ACGa~~~V~~~ 140 (148)
T 2d74_B 99 KYIKEYVICPVCGSPDTKIIK-RDRFHFLKCEACGAETPIQHL 140 (148)
T ss_dssp HHHHHHSSCSSSCCTTCCCCB-SSSSBCCCCSSSCCCCCCCC-
T ss_pred HHHHHEEECCCCCCcCcEEEE-eCCEEEEEecCCCCCccccch
Confidence 999999999999999999999 889999999999999999976
No 5
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=100.00 E-value=9.8e-47 Score=335.79 Aligned_cols=119 Identities=24% Similarity=0.420 Sum_probs=106.6
Q ss_pred CCCCCcccccCCCceEEEeccCCCceEEEechHHHHHHhCCCchHHHHHHHHhhcCcccccCCCCeEEEEeecCHHHHHH
Q 013311 10 NSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVNGAHDTAKLAG 89 (445)
Q Consensus 10 ~~~d~~~Rykmp~~~~k~eG~gng~kT~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~~~ii~G~~~~~~l~~ 89 (445)
...+.+|||+||+|++++||+ ||+|+||.+||++|||||+||+|||++||||+|++|+ ++||||||+|++.+||+
T Consensus 20 ~~~~~~~R~kmp~~~v~~eG~----kTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~-~~rlii~G~~~~~~i~~ 94 (139)
T 3cw2_K 20 EKGRKEGTQSLPNMIILNIGN----TTIIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDD-KGELVIQGKFSSQVINT 94 (139)
T ss_dssp TSSSCSSCCSCCCCCCCCCSS----SCCCSCSSSTTTTTSSCCTTTHHHHSCCSSCCCCCSS-SCCCTTTCSCCSCCSCS
T ss_pred cccCCccceecCCCeEEEECC----eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceEECC-CCeEEEEeeeCHHHHHH
Confidence 334788999999999999999 8999999999999999999999999999999999998 89999999999999999
Q ss_pred HHHHHHhhccccCCCCCCCceEEEecCCeeeeeccccCCcccccc
Q 013311 90 LLENFIKKYVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVDM 134 (445)
Q Consensus 90 ~l~~fi~~fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~~ 134 (445)
+|++||++||+|++|+||||.|++ ++++++++|.|||++++|++
T Consensus 95 ~L~~yI~~yVlC~~C~sPdT~l~k-~~r~~~l~C~ACGa~~~V~~ 138 (139)
T 3cw2_K 95 LMERFLKAYVECSTCKSLDTILKK-EKKSWYIVCLACGAQTPVKP 138 (139)
T ss_dssp TTTTTSSCCSSCCSSSSSCCCSCS-SCSTTTSSCCC---------
T ss_pred HHHHHHHHeeECCCCCCcCcEEEE-eCCeEEEEecCCCCCCccCC
Confidence 999999999999999999999999 88999999999999999974
No 6
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=99.96 E-value=4.1e-29 Score=232.53 Aligned_cols=149 Identities=19% Similarity=0.241 Sum_probs=124.9
Q ss_pred hhHHHHHHHHHHhcCCChH----HHHHHhhhcCCChhhHHHHHHHHHHhhhhh-------------hHHHHHHhhHHHHH
Q 013311 296 NTHLADQMKDFLKKGASAS----QFKSFLGSLSGTPQEVMDALFVALFDGIEK-------------GFAKEVTKKKNYLA 358 (445)
Q Consensus 296 ~~e~v~~lk~~l~~~~s~~----ei~~el~~~~l~~~~v~~vl~eaLf~~i~~-------------~i~k~i~k~~~lL~ 358 (445)
..+++..|.+.++++++++ +|+.+++++|++.++++.++|.++|..+.. .+.++|++|++||.
T Consensus 15 ~~Ev~~sl~ra~~e~~~~d~~~LEinslr~a~N~s~~eV~~av~~ail~~~~~~~~~~~~~~~~~~a~~~~i~~~~~ll~ 94 (182)
T 3jui_A 15 QNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVVLEFPLQQMDSPLDSSRYCALLLPLLKAWSPVFR 94 (182)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHGGGGGCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHH
Confidence 3467788888888888776 577788889999999999999999987521 45678999999999
Q ss_pred HhccCchhHHHHHHHHHHHhcccChhhHHHHHHHHHHHhhCCcchhHHHHHHhhcCCCCCcc-hhHHHHhhhHHHHHhcc
Q 013311 359 AATQEEGSQMVLLHSLESFCGKARPAAVKEVALVLKALYDNDLLEEEFILDWYQKGLGGANK-NSQVWKNAKPVIEWLQN 437 (445)
Q Consensus 359 ~~~~~~~~Q~~lL~alE~~~~~~~~~l~~~~~~ILk~LYD~DIleEE~Il~W~~k~s~~~~~-~~~vrk~a~pFI~WLeE 437 (445)
+|+++.+.|+++|++||.||.. ++.+++.||.||+.|||.|||+||+|++||+++++.+.+ ...+|++++|||+||+|
T Consensus 95 ~~~~~~~~q~~lL~ale~~~~~-~~~~~~~~~~il~~LYd~DileEe~Il~W~~~~~~~~~~~~~~vr~~~~~Fi~WL~e 173 (182)
T 3jui_A 95 NYIKRAADHLEALAAIEDFFLE-HEALGISMAKVLMAFYQLEILAGETILSWFSQRDTTDKGQQLRKNQQLQRFIQWLKE 173 (182)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHH-CGGGGGGHHHHHHHHHHTTSSCHHHHHHHHTCCC--CHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHhhcchhchHHHHHHHHcCCccccchHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999976 788899999999999999999999999999998876532 23789999999999999
Q ss_pred CccCccCC
Q 013311 438 AESETEED 445 (445)
Q Consensus 438 AEEEsdeE 445 (445)
||||||||
T Consensus 174 AEEEs~ee 181 (182)
T 3jui_A 174 AEEESSED 181 (182)
T ss_dssp HHC-----
T ss_pred cCcccCCC
Confidence 99998765
No 7
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.6e-29 Score=231.24 Aligned_cols=146 Identities=21% Similarity=0.310 Sum_probs=120.2
Q ss_pred ChhHHHHHHHHHHhcCCCh---H--HHHHHhhhcCC-ChhhHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHhccCchhHH
Q 013311 295 PNTHLADQMKDFLKKGASA---S--QFKSFLGSLSG-TPQEVMDALFVALFDGIEKGFAKEVTKKKNYLAAATQEEGSQM 368 (445)
Q Consensus 295 ~~~e~v~~lk~~l~~~~s~---~--ei~~el~~~~l-~~~~v~~vl~eaLf~~i~~~i~k~i~k~~~lL~~~~~~~~~Q~ 368 (445)
.++.|+.||+... .+... + +|...+..+.+ ..++++.+++++||+. +++++|++|++||.+|+++..+|+
T Consensus 12 ~~d~~~~~i~~~~-~~~~~~~~~~~~i~~~a~~l~~~~~~~~~~vl~~~lf~~---~i~~~l~k~~~lL~~~~~~~~~q~ 87 (177)
T 2ful_A 12 QLDEYGEWILEQA-GEDKENLPSDVELYKKAAELDVLNDPKIGCVLAQCLFDE---DIVNEIAEHNAFFTKILVTPEYEK 87 (177)
T ss_dssp HHHHHHHHHHHHH-CTTSTTCCCHHHHHHHHHHTTCTTCTTHHHHHHHHSCST---THHHHTTSCHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHhc-ccccccccchHHHHHHHHhcCcchhhHHHHHHHHHHhch---hHHHHHHHHHHHHHHHcCCcHHHH
Confidence 5889999998862 22111 2 44444445554 3589999999999986 899999999999999999999999
Q ss_pred HHHHHHHHHhcccChhhHHHHHHHHHHHhhCCcchhHHHHHHhhcCCCCCc---chhHHHHhhhHHHHHhccCccCccC
Q 013311 369 VLLHSLESFCGKARPAAVKEVALVLKALYDNDLLEEEFILDWYQKGLGGAN---KNSQVWKNAKPVIEWLQNAESETEE 444 (445)
Q Consensus 369 ~lL~alE~~~~~~~~~l~~~~~~ILk~LYD~DIleEE~Il~W~~k~s~~~~---~~~~vrk~a~pFI~WLeEAEEEsde 444 (445)
++|++||.||..+++.+++.|++||+.|||.|||+|++|++||++++++++ ...++|++++|||+||++||||||+
T Consensus 88 ~lL~ale~~~~~~~~~~~~~~~~IL~~LYd~DIleEeaIl~W~~~~skk~v~~e~~~~v~~~~~pFI~WL~eAEEEsee 166 (177)
T 2ful_A 88 NFMGGIERFLGLEHKDLIPLLPKILVQLYNNDIISEEEIMRFGTKSSKKFVPKEVSKKVRRAAKPFITWLETAESDDDE 166 (177)
T ss_dssp HHHHHHHHHHHTTCGGGGGGHHHHHHHHHHTTSSCHHHHHHHHHCCCSSSSCHHHHHHHHHTTHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHcChhHHHHHHHHHHHHhccchhhhHHHHHHHhcCCcccCChHHHHHHHHHHHHHHHHHHcccccccc
Confidence 999999999975689999999999999999999999999999999887775 3467999999999999999987764
No 8
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=99.96 E-value=1.5e-28 Score=230.01 Aligned_cols=149 Identities=19% Similarity=0.246 Sum_probs=124.6
Q ss_pred hhHHHHHHHHHHhcCCChHH----HHHHhhhcCCChhhHHHHHHHHHHhhhhh-----------hHHHHHHhhHHHHHHh
Q 013311 296 NTHLADQMKDFLKKGASASQ----FKSFLGSLSGTPQEVMDALFVALFDGIEK-----------GFAKEVTKKKNYLAAA 360 (445)
Q Consensus 296 ~~e~v~~lk~~l~~~~s~~e----i~~el~~~~l~~~~v~~vl~eaLf~~i~~-----------~i~k~i~k~~~lL~~~ 360 (445)
..+++..|.+.+++|+++++ |+.+++++|++.++++.+++.++|..+.. .+.+.|++|++||.+|
T Consensus 23 ~~Ev~~sL~r~~~e~~~~d~iilEin~lr~a~n~s~~ev~~~v~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~~~ 102 (189)
T 1paq_A 23 EKEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFNQWGLLFKRQ 102 (189)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHGGGGGGT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 55788889999999998765 55566778999999999999999987631 3466799999999999
Q ss_pred ccCchhHHHHHHHHHHHhc-ccChhhHHHHHHHHHHHhhCCcchhHHHHHHhhcCCCCCcchhHHHHhhhHHHHHhccCc
Q 013311 361 TQEEGSQMVLLHSLESFCG-KARPAAVKEVALVLKALYDNDLLEEEFILDWYQKGLGGANKNSQVWKNAKPVIEWLQNAE 439 (445)
Q Consensus 361 ~~~~~~Q~~lL~alE~~~~-~~~~~l~~~~~~ILk~LYD~DIleEE~Il~W~~k~s~~~~~~~~vrk~a~pFI~WLeEAE 439 (445)
+++.++|+++|++||.||+ .++|.+++.||+||+.|||.|||+|++|++||++++... ...++|++++|||+||++||
T Consensus 103 ~~~~~~q~~lL~ale~~~~~~~~~~~~~~~~~il~~LYd~DileEe~il~W~~~~~~~~-~~~~v~~~~~~Fi~WL~eAE 181 (189)
T 1paq_A 103 AFDEEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTDP-RYDEVKKLTVKWVEWLQNAD 181 (189)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHTCCCCG-GGHHHHHHHHHHHHHHHHTC
T ss_pred HcCcHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhccccccccHHHHHHHhCCCchH-HHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999998 447999999999999999999999999999999876322 24489999999999999999
Q ss_pred cCccCC
Q 013311 440 SETEED 445 (445)
Q Consensus 440 EEsdeE 445 (445)
||||+|
T Consensus 182 eEs~~e 187 (189)
T 1paq_A 182 EESSSE 187 (189)
T ss_dssp ------
T ss_pred cccccc
Confidence 888654
No 9
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=99.95 E-value=1.4e-27 Score=226.36 Aligned_cols=145 Identities=26% Similarity=0.365 Sum_probs=123.1
Q ss_pred hhHHHHHHHHHHhcCC---ChHHHHHHhhhcCCChhhHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHhcc-CchhHHHHH
Q 013311 296 NTHLADQMKDFLKKGA---SASQFKSFLGSLSGTPQEVMDALFVALFDGIEKGFAKEVTKKKNYLAAATQ-EEGSQMVLL 371 (445)
Q Consensus 296 ~~e~v~~lk~~l~~~~---s~~ei~~el~~~~l~~~~v~~vl~eaLf~~i~~~i~k~i~k~~~lL~~~~~-~~~~Q~~lL 371 (445)
++.|+.+++..-..+. ..++|...+..+.+ .++++.+|+++||+. +++++|++|++||.+|++ +...|+++|
T Consensus 9 ~d~~~~~~~~~~~~~~~~~~~~~i~~ea~~l~~-k~~~~~vl~e~lf~~---~i~~~l~k~~~lL~~~~~~~~~~Q~~lL 84 (208)
T 2iu1_A 9 VNILFDFVKKKKEEGVIDSSDKEIVAEAERLDV-KAMGPLVLTEVLFNE---KIREQIKKYRRHFLRFCHNNKKAQRYLL 84 (208)
T ss_dssp HHHHHHHHHHHHHHTCGGGCHHHHHHHHHHTTC-GGGHHHHHHHHHCST---THHHHHHHTHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHhcch-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 6777888877333333 23467777777776 578899999999986 899999999999999998 679999999
Q ss_pred HHHHHHhcccChhhHHHHHHHHHHHhhCCcchhHHHHHHhhcCCCCCcc---hhHHHHhhhHHHHHhccCccCccC
Q 013311 372 HSLESFCGKARPAAVKEVALVLKALYDNDLLEEEFILDWYQKGLGGANK---NSQVWKNAKPVIEWLQNAESETEE 444 (445)
Q Consensus 372 ~alE~~~~~~~~~l~~~~~~ILk~LYD~DIleEE~Il~W~~k~s~~~~~---~~~vrk~a~pFI~WLeEAEEEsde 444 (445)
++||.||..++|.+++.||.||+.|||.|||+|++|++||++++++++. .+++|++++|||+||++||||||+
T Consensus 85 ~alE~~~~~~~~~~~~~~~~IL~~LYD~DIleEEaIl~W~~~~s~~~~~~e~~k~v~~~~~pFI~WL~EAEEEs~e 160 (208)
T 2iu1_A 85 HGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFIKWLKEAEEESSG 160 (208)
T ss_dssp HHHHHHHHHTHHHHGGGHHHHHHHHHHTTSSCHHHHHHHHHSCCCSSSCHHHHHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhccchhhhHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHcccccccc
Confidence 9999998776688999999999999999999999999999998887762 237999999999999999987763
No 10
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}
Probab=99.90 E-value=2.4e-23 Score=191.22 Aligned_cols=113 Identities=15% Similarity=0.212 Sum_probs=99.5
Q ss_pred CChhhHHHHHHHHHHhhhhh---------------------hHHHHHHhhHHHHHHhccC-chhHHHHHHHHHHHhcccC
Q 013311 325 GTPQEVMDALFVALFDGIEK---------------------GFAKEVTKKKNYLAAATQE-EGSQMVLLHSLESFCGKAR 382 (445)
Q Consensus 325 l~~~~v~~vl~eaLf~~i~~---------------------~i~k~i~k~~~lL~~~~~~-~~~Q~~lL~alE~~~~~~~ 382 (445)
.+.++++.+++.++|..+.+ .+.++|++|+++|.+|+++ .++|+++|++||.||+. +
T Consensus 34 ~s~~ev~~al~~avl~~i~~~~~~~~~~~d~~~~~~k~~~~~~~~~l~~~~~ll~~~~~~~~~~q~~lL~alq~~~~~-~ 112 (168)
T 3d3m_A 34 HVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYN-S 112 (168)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHSCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-T
T ss_pred CCHHHHHHHHHHHHHHHHHHhccccccccccccccchhHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-C
Confidence 37889999999999977643 1246799999999999985 89999999999999987 6
Q ss_pred hhhHHHHHHHHHHHhhCCcchhHHHHHHhhcCCCCCcchhHHHHhhhHHHHHhccC
Q 013311 383 PAAVKEVALVLKALYDNDLLEEEFILDWYQKGLGGANKNSQVWKNAKPVIEWLQNA 438 (445)
Q Consensus 383 ~~l~~~~~~ILk~LYD~DIleEE~Il~W~~k~s~~~~~~~~vrk~a~pFI~WLeEA 438 (445)
+.+++.|+.||+.|||.|||+||+|++||+++++.+.+..++|++++|||+||+||
T Consensus 113 ~~~~~~~~~il~~LYd~DvleEe~il~W~~~~~~~~~~~~~~~~~~~~Fi~WL~eA 168 (168)
T 3d3m_A 113 NFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWLETA 168 (168)
T ss_dssp TCCTTHHHHHHHHHHHTTSSCHHHHHHHHHCCSCCCTTHHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHhhcchhhHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHhcC
Confidence 77889999999999999999999999999988755445678999999999999987
No 11
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=185.75 Aligned_cols=142 Identities=15% Similarity=0.235 Sum_probs=115.5
Q ss_pred ChhHHHHHHHHHHhcCCChHHHHHHhhh----cCCChhhHHHHHHHHHHhhhh--hh-------------------HHHH
Q 013311 295 PNTHLADQMKDFLKKGASASQFKSFLGS----LSGTPQEVMDALFVALFDGIE--KG-------------------FAKE 349 (445)
Q Consensus 295 ~~~e~v~~lk~~l~~~~s~~ei~~el~~----~~l~~~~v~~vl~eaLf~~i~--~~-------------------i~k~ 349 (445)
+..++...|.+.+..+.++.+|....+. .+++.+..+.+||.+++..+. ++ ..+.
T Consensus 196 ~~~~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~~fir~L~t~v~~~~~~~~~~~~~~~d~~~~~~k~~~~~~~~~ 275 (364)
T 3l6a_A 196 PLLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQL 275 (364)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHH
Confidence 3456777888888888887777766655 246678889999999998762 11 1356
Q ss_pred HHhhHHHHHHhccCc-hhHHHHHHHHHHHhccc-ChhhHHHHHHHHHHHhhCCcchhHHHHHHhhcCCCCCcchhHHHHh
Q 013311 350 VTKKKNYLAAATQEE-GSQMVLLHSLESFCGKA-RPAAVKEVALVLKALYDNDLLEEEFILDWYQKGLGGANKNSQVWKN 427 (445)
Q Consensus 350 i~k~~~lL~~~~~~~-~~Q~~lL~alE~~~~~~-~~~l~~~~~~ILk~LYD~DIleEE~Il~W~~k~s~~~~~~~~vrk~ 427 (445)
|++|+++|.+|+++. +.|+++|+|||.||+.. .|. ..++.||+.|||.|||+||+|++||++.++.+++...+|++
T Consensus 276 l~~~~~ll~~~~~~~~~~q~~~L~alq~~~~~~~~~~--~~l~~il~~LYd~DileEe~il~W~~~~~~~~~~k~~~~~~ 353 (364)
T 3l6a_A 276 LLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPK--GMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQ 353 (364)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCT--THHHHHHHHHHHTTSSCHHHHHHHHHCCCCSSTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHHHhhhhhhHHHHHHHhcCCcccchHHHHHHH
Confidence 999999999999986 46999999999999863 343 45788999999999999999999999887766666789999
Q ss_pred hhHHHHHhccC
Q 013311 428 AKPVIEWLQNA 438 (445)
Q Consensus 428 a~pFI~WLeEA 438 (445)
++|||+||+||
T Consensus 354 ~~~Fi~WL~eA 364 (364)
T 3l6a_A 354 VNQWLTWLETA 364 (364)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999999987
No 12
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=99.81 E-value=1.3e-20 Score=140.60 Aligned_cols=52 Identities=27% Similarity=0.451 Sum_probs=49.4
Q ss_pred eEEEeccCCCceEEEechHHHHHHhCCCchHHHHHHHHhhcCcccccCCCCeEEEEee
Q 013311 24 ITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVNGA 81 (445)
Q Consensus 24 ~~k~eG~gng~kT~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~~~ii~G~ 81 (445)
++.++|+ ||+|+||.|||++|+|||+|++|||++||||+|++| ++||||||+
T Consensus 1 ~v~~eG~----kTvi~Nf~~Ia~~L~R~p~hv~ky~~~ELGt~g~id--~~rlii~G~ 52 (52)
T 1k8b_A 1 EILIEGN----RTIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLE--GGRLILQRR 52 (52)
T ss_dssp CEEEETT----EEEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEEE--TTEEEEECC
T ss_pred CcEEEcC----eEEEECHHHHHHHHCCCHHHHHHHHHHHhCCCeeec--CCEEEEeCC
Confidence 4678988 999999999999999999999999999999999999 799999996
No 13
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=99.38 E-value=8e-13 Score=133.32 Aligned_cols=119 Identities=18% Similarity=0.279 Sum_probs=98.6
Q ss_pred ChhHHHHHHHHHHhcCCChHHHHHHhhh----cCCChhhHHHHHHHHHHhhh-hh-----hHHHHHHhhHHHHHHhccCc
Q 013311 295 PNTHLADQMKDFLKKGASASQFKSFLGS----LSGTPQEVMDALFVALFDGI-EK-----GFAKEVTKKKNYLAAATQEE 364 (445)
Q Consensus 295 ~~~e~v~~lk~~l~~~~s~~ei~~el~~----~~l~~~~v~~vl~eaLf~~i-~~-----~i~k~i~k~~~lL~~~~~~~ 364 (445)
+..++...|.+.+..+.++++|..+.+. ++++.++++.+++.++|..+ .+ ...+.|++|.|+|.+|+++.
T Consensus 207 ~~~ev~~~L~~~l~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~pll~~~~~~~ 286 (339)
T 1ug3_A 207 PSEELNRQLEKLLKEGSSNQRVFDWIEANLSEQQIVSNTLVRALMTAVCYSAIIFETPLRVDVAVLKARAKLLQKYLCDE 286 (339)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHHHHTEECSSSCEECHHHHHHHHHHHHHHCCSH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHcCCc
Confidence 4568888999999888888877766654 46788999999999999862 21 13467999999999999999
Q ss_pred hhHHHHHHHHHHHhcccChhhHHHHHHHHHHHhhCCcchhHHHHHHhhcC
Q 013311 365 GSQMVLLHSLESFCGKARPAAVKEVALVLKALYDNDLLEEEFILDWYQKG 414 (445)
Q Consensus 365 ~~Q~~lL~alE~~~~~~~~~l~~~~~~ILk~LYD~DIleEE~Il~W~~k~ 414 (445)
+.|+++|.+||.||+. +....+.|..|++.|||.|||+||+|++||+..
T Consensus 287 ~~ql~~L~alQ~~~~~-~~~~~~~l~~~~~~LYd~dVi~Eeail~W~~~~ 335 (339)
T 1ug3_A 287 QKELQALYALQALVVT-LEQPPNLLRMFFDALYDEDVVKEDAFYSWESSK 335 (339)
T ss_dssp HHHHHHHHHHHHHHHH-TTCCTTHHHHHHHHHHHTTSSCHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHhCcchhhHHHHHHHHhcC
Confidence 9999999999999986 344456899999999999999999999999763
No 14
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=99.37 E-value=1.5e-13 Score=94.97 Aligned_cols=35 Identities=43% Similarity=0.879 Sum_probs=33.5
Q ss_pred cccCCCCCCCceEEEecCCeeeeeccccCCcccccc
Q 013311 99 VQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVDM 134 (445)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~~ 134 (445)
|+|++|+||||.|++ +++.++++|+|||++++|++
T Consensus 1 VlC~~C~~peT~l~~-~~~~~~l~C~aCG~~~~v~~ 35 (36)
T 1k81_A 1 VICRECGKPDTKIIK-EGRVHLLKCMACGAIRPIRM 35 (36)
T ss_dssp CCCSSSCSCEEEEEE-ETTEEEEEEETTTEEEEECC
T ss_pred CCCcCCCCCCcEEEE-eCCcEEEEhhcCCCcccccc
Confidence 899999999999999 88999999999999999974
No 15
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=94.48 E-value=0.42 Score=52.99 Aligned_cols=116 Identities=11% Similarity=0.194 Sum_probs=90.4
Q ss_pred CChhHHHHHHHHHHhcCCChHHHHHHhhhcCCC---h---------hhHHHHHHHHHHhhhhh---hHHHHHHhhHHHHH
Q 013311 294 GPNTHLADQMKDFLKKGASASQFKSFLGSLSGT---P---------QEVMDALFVALFDGIEK---GFAKEVTKKKNYLA 358 (445)
Q Consensus 294 ~~~~e~v~~lk~~l~~~~s~~ei~~el~~~~l~---~---------~~v~~vl~eaLf~~i~~---~i~k~i~k~~~lL~ 358 (445)
.|+......|..++.+..++.++...+.....+ . ..++.+++++++..... -+...|.+|..+|+
T Consensus 476 ~p~~~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~~~~~i~v~~q~ll~~GskS~SH~~~~lery~~~lk 555 (771)
T 1h2v_C 476 LPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFK 555 (771)
T ss_dssp STTHHHHHHHHHHHHTTCCHHHHHHHGGGCC-------------CCHHHHHHHHHHHHHHSTTCHHHHHHHHHHTHHHHH
T ss_pred CcchHHHHHHHHHHHccCCHHHHHHHHHhchhcccccccccccccchHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 477888888988888777888888888873211 0 14566778888764333 45677999999999
Q ss_pred HhccCchhHHHHHHHHHHHhcccChhhHHHHHHHHHHHhhCCcchhHHHHHHhhc
Q 013311 359 AATQEEGSQMVLLHSLESFCGKARPAAVKEVALVLKALYDNDLLEEEFILDWYQK 413 (445)
Q Consensus 359 ~~~~~~~~Q~~lL~alE~~~~~~~~~l~~~~~~ILk~LYD~DIleEE~Il~W~~k 413 (445)
.++.++..|..+|.++-+|... +|.. ...|+..|-...||+-.+|+.|.=.
T Consensus 556 ~l~~~~~~q~~il~~v~~~W~~-~~q~---~~ividkll~~~iv~p~~Vv~w~f~ 606 (771)
T 1h2v_C 556 TLAESDEGKLHVLRVMFEVWRN-HPQM---IAVLVDKMIRTQIVDCAAVANWIFS 606 (771)
T ss_dssp HHTSSHHHHHHHHHHHHHHHTT-CHHH---HHHHHHHHHHTTSSCHHHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHHHHHhc-CCce---EehHHHHHHhcCCCCHHHHHHHHcC
Confidence 9999989999999999999865 6763 5557888889999999999999844
No 16
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=90.40 E-value=1.1 Score=37.68 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=61.3
Q ss_pred CceeccCCCCCCCCccc------ccCCCceEEEeccCCCce--EEEechHHHHHHhCCCchHHHHHHHHhhcCcccccCC
Q 013311 1 MALQNIGASNSDDAFYR------YKMPKMITKIEGRGNGIK--TNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEK 72 (445)
Q Consensus 1 Ma~ini~~~~~~d~~~R------ykmp~~~~k~eG~gng~k--T~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~ 72 (445)
|++-|. ..-|||+- =..|.+.++++-| ||-| |+|.+|.. .-++.-+.|.|...+|+.|++-..
T Consensus 1 m~~~~~---~~~dpf~~~~~~~~~~~~~V~Ir~~~R-~g~K~VT~V~Gl~~-----~~dlk~lak~lKkk~acggsV~~~ 71 (108)
T 2ogh_A 1 MSIENL---KSFDPFADTGDDETATSNYIHIRIQQR-NGRKTLTTVQGVPE-----EYDLKRILKVLKKDFACNGNIVKD 71 (108)
T ss_dssp CCSSCC---SCCCCCCCCCCCCCCCSCSEEEEEECC-SSSCCEEEEECCCT-----TSCHHHHHHHHHHHHCCCEEEECC
T ss_pred Cccccc---CCCCccccccccccCCCCeEEEEEEEc-cCCceEEEEeCCCc-----chhHHHHHHHHHHHhcCceEEecC
Confidence 664444 23477764 3446788999876 5534 67888862 448999999999999999999531
Q ss_pred ---CCeEEEEeecCHHHHHHHHHHHH
Q 013311 73 ---TGTSLVNGAHDTAKLAGLLENFI 95 (445)
Q Consensus 73 ---~~~~ii~G~~~~~~l~~~l~~fi 95 (445)
.....|+|.|...-.+-|+..++
T Consensus 72 ~~~g~~I~iQGD~r~~v~~~L~~~g~ 97 (108)
T 2ogh_A 72 PEMGEIIQLQGDQRAKVCEFMISQLG 97 (108)
T ss_dssp TTSSCEEEEESSCHHHHHHHHHHHHT
T ss_pred CCCceEEEEcCCHHHHHHHHHHHcCC
Confidence 12899999998877766666643
No 17
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=84.08 E-value=0.78 Score=33.86 Aligned_cols=33 Identities=24% Similarity=0.514 Sum_probs=25.4
Q ss_pred ccccCCCCCCCceEEEe------cCCeeeeeccccCCcc
Q 013311 98 YVQCYGCGNPETDIIIT------KTQMVNLKCAACGFVS 130 (445)
Q Consensus 98 fVlC~~C~~peT~l~~~------k~~~~~~~C~aCG~~~ 130 (445)
.|.||.|+..+..+... +..++|..|..||++-
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w 53 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 53 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEe
Confidence 58899999977765542 2357899999999863
No 18
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=84.00 E-value=0.95 Score=32.88 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=26.4
Q ss_pred ccccCCCCCCCceEEEe------cCCeeeeeccccCCcc
Q 013311 98 YVQCYGCGNPETDIIIT------KTQMVNLKCAACGFVS 130 (445)
Q Consensus 98 fVlC~~C~~peT~l~~~------k~~~~~~~C~aCG~~~ 130 (445)
-+.||.|++++..+... +.-++|..|..||++-
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w 47 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 47 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeE
Confidence 46899999999987752 2467899999999863
No 19
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=82.35 E-value=0.41 Score=37.20 Aligned_cols=35 Identities=14% Similarity=0.402 Sum_probs=25.4
Q ss_pred HhhccccCCCCCCCceEEEecCCeeeeeccccCCccccc
Q 013311 95 IKKYVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVD 133 (445)
Q Consensus 95 i~~fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~ 133 (445)
+-..+.||.|+.| |..+ ...-.|.|.+||...||.
T Consensus 5 LLeiL~CP~ck~~---L~~~-~~~~~LiC~~cg~~YPI~ 39 (69)
T 2pk7_A 5 LLDILACPICKGP---LKLS-ADKTELISKGAGLAYPIR 39 (69)
T ss_dssp GGGTCCCTTTCCC---CEEC-TTSSEEEETTTTEEEEEE
T ss_pred HHhheeCCCCCCc---CeEe-CCCCEEEcCCCCcEecCc
Confidence 4456889999986 4442 223467899999999885
No 20
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=81.04 E-value=0.75 Score=32.93 Aligned_cols=31 Identities=29% Similarity=0.696 Sum_probs=21.8
Q ss_pred ccccCCCCCCCceEEEecCCeeeeeccccCCccc
Q 013311 98 YVQCYGCGNPETDIIITKTQMVNLKCAACGFVSE 131 (445)
Q Consensus 98 fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~ 131 (445)
.+.||.|+++ .|+.+. ..-.+.|..||..-+
T Consensus 5 ~~~CP~C~~~--~l~~d~-~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 5 QKVCPACESA--ELIYDP-ERGEIVCAKCGYVIE 35 (50)
T ss_dssp CCSCTTTSCC--CEEEET-TTTEEEESSSCCBCC
T ss_pred cEeCcCCCCc--ceEEcC-CCCeEECcccCCccc
Confidence 4579999985 466632 334589999999544
No 21
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=78.05 E-value=0.96 Score=33.77 Aligned_cols=28 Identities=21% Similarity=0.555 Sum_probs=20.9
Q ss_pred cccCCCCCCCceEEEecCCeeeeeccccCCc
Q 013311 99 VQCYGCGNPETDIIITKTQMVNLKCAACGFV 129 (445)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~ 129 (445)
..||.|++.. |+. ....-.+.|..||..
T Consensus 12 ~~Cp~C~~~~--lv~-D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 12 VTCPNHPDAI--LVE-DYRAGDMICPECGLV 39 (58)
T ss_dssp CSBTTBSSSC--CEE-CSSSCCEECTTTCCE
T ss_pred ccCcCCCCCc--eeE-eCCCCeEEeCCCCCE
Confidence 4799999865 666 334456899999976
No 22
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=75.39 E-value=1.5 Score=27.83 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=17.0
Q ss_pred ecCHHHHHHHHHHHHhhccc
Q 013311 81 AHDTAKLAGLLENFIKKYVQ 100 (445)
Q Consensus 81 ~~~~~~l~~~l~~fi~~fVl 100 (445)
+|+.++|+++||+-|+.||-
T Consensus 8 rfdekqieelldncietfva 27 (31)
T 4h62_V 8 RFDEKQIEELLDNCIETFVA 27 (31)
T ss_dssp --CHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHh
Confidence 68899999999999999985
No 23
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=74.28 E-value=0.43 Score=36.98 Aligned_cols=33 Identities=18% Similarity=0.423 Sum_probs=23.7
Q ss_pred hccccCCCCCCCceEEEecCCeeeeeccccCCccccc
Q 013311 97 KYVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVD 133 (445)
Q Consensus 97 ~fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~ 133 (445)
..+.||.|+.| |..+. ..-.|.|.+||...||.
T Consensus 7 ~iL~CP~ck~~---L~~~~-~~~~LiC~~cg~~YPI~ 39 (68)
T 2hf1_A 7 EILVCPLCKGP---LVFDK-SKDELICKGDRLAFPIK 39 (68)
T ss_dssp EECBCTTTCCB---CEEET-TTTEEEETTTTEEEEEE
T ss_pred hheECCCCCCc---CeEeC-CCCEEEcCCCCcEecCC
Confidence 45789999985 44422 22357899999999885
No 24
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=73.73 E-value=1.1 Score=34.65 Aligned_cols=33 Identities=6% Similarity=0.054 Sum_probs=23.8
Q ss_pred hccccCCCCCCCceEEEecCCeeeeeccccCCccccc
Q 013311 97 KYVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVD 133 (445)
Q Consensus 97 ~fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~ 133 (445)
..+.||.|+.| |..+. ..-.|.|.+||...||.
T Consensus 7 ~iL~CP~ck~~---L~~~~-~~~~LiC~~cg~~YPI~ 39 (68)
T 2jr6_A 7 DILVCPVTKGR---LEYHQ-DKQELWSRQAKLAYPIK 39 (68)
T ss_dssp CCCBCSSSCCB---CEEET-TTTEEEETTTTEEEEEE
T ss_pred hheECCCCCCc---CeEeC-CCCEEEcCCCCcEecCC
Confidence 46789999985 44421 22357899999999885
No 25
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=73.03 E-value=1.2 Score=38.14 Aligned_cols=40 Identities=18% Similarity=0.443 Sum_probs=30.5
Q ss_pred cccCCCCCCCceEEEe------cCCeeeeeccccCCcccccchhhh
Q 013311 99 VQCYGCGNPETDIIIT------KTQMVNLKCAACGFVSEVDMRDKL 138 (445)
Q Consensus 99 VlC~~C~~peT~l~~~------k~~~~~~~C~aCG~~~~v~~~~kl 138 (445)
+.||.|++.+..+... +.-++|..|..||++-......|-
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~nn~~~~ 118 (122)
T 1twf_I 73 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQKNKR 118 (122)
T ss_dssp CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCTTCCC
T ss_pred CCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccCChhhe
Confidence 7899999999988752 246789999999998665544443
No 26
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=72.22 E-value=4.4 Score=35.02 Aligned_cols=67 Identities=21% Similarity=0.208 Sum_probs=50.1
Q ss_pred CCceEEEeccCCCce--EEEechHHHHHHhCCCchHHHHHHHHhhcCcccccCC---CCeEEEEeecCHHHHHHHHHH
Q 013311 21 PKMITKIEGRGNGIK--TNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEK---TGTSLVNGAHDTAKLAGLLEN 93 (445)
Q Consensus 21 p~~~~k~eG~gng~k--T~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~---~~~~ii~G~~~~~~l~~~l~~ 93 (445)
|.+.++++-| ||-| |+|.+|.. .-++.-+.|.|...+|+.|++-.. .+.+.|+|.|...-.+-|+..
T Consensus 42 ~~V~Ir~~~R-~grK~VT~V~GL~~-----~~dlk~laK~LKkk~acgGtVk~~~e~g~~I~IQGD~r~~I~~~L~~~ 113 (126)
T 2if1_A 42 DYIHIRIQQR-NGRKTLTTVQGIAD-----DYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEI 113 (126)
T ss_dssp TCEECCCCCS-SSSCCBCEEBSCCT-----TSCHHHHHTTHHHHTCCCEEEECCTTTSSEEEESBCCHHHHHHHHHHH
T ss_pred CeEEEEEEee-cCCccEEEEeCCCC-----chhHHHHHHHHHHHhcCCeEEecCCCCccEEEEcCCHHHHHHHHHHHc
Confidence 5678888855 5544 77899872 447889999999999999998531 137999999987765555554
No 27
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=71.03 E-value=0.77 Score=32.44 Aligned_cols=29 Identities=24% Similarity=0.515 Sum_probs=22.3
Q ss_pred ccCCCCCCCceEEEecCCeeeeeccccCCc
Q 013311 100 QCYGCGNPETDIIITKTQMVNLKCAACGFV 129 (445)
Q Consensus 100 lC~~C~~peT~l~~~k~~~~~~~C~aCG~~ 129 (445)
.|..|+..+|-+-+ ++..-..-|+|||-.
T Consensus 3 ~C~~C~tt~Tp~WR-~gp~G~~LCNaCGl~ 31 (43)
T 2vut_I 3 TCTNCFTQTTPLWR-RNPEGQPLCNACGLF 31 (43)
T ss_dssp CCSSSCCCCCSCCE-ECTTSCEECHHHHHH
T ss_pred cCCccCCCCCCccc-cCCCCCcccHHHHHH
Confidence 59999999999998 432223789999954
No 28
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=71.01 E-value=1.7 Score=33.74 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=24.4
Q ss_pred hccccCCCCCCCceEEEecCCeeeeeccccCCccccc
Q 013311 97 KYVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVD 133 (445)
Q Consensus 97 ~fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~ 133 (445)
..+.||.|+.| |..+. ..-.|.|.+||...||.
T Consensus 7 ~iL~CP~ck~~---L~~~~-~~~~LiC~~cg~~YPI~ 39 (70)
T 2js4_A 7 DILVCPVCKGR---LEFQR-AQAELVCNADRLAFPVR 39 (70)
T ss_dssp CCCBCTTTCCB---EEEET-TTTEEEETTTTEEEEEE
T ss_pred hheECCCCCCc---CEEeC-CCCEEEcCCCCceecCC
Confidence 46789999995 55422 22357899999999985
No 29
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=69.14 E-value=1.4 Score=40.12 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=25.5
Q ss_pred ccccCCCCCCCceEEEe------cCCeeeeeccccCCcc
Q 013311 98 YVQCYGCGNPETDIIIT------KTQMVNLKCAACGFVS 130 (445)
Q Consensus 98 fVlC~~C~~peT~l~~~------k~~~~~~~C~aCG~~~ 130 (445)
-+.||.|++++..+... +.-++|..|..||++-
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w 175 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRW 175 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEE
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCee
Confidence 35899999999877541 2357899999999863
No 30
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=68.75 E-value=2 Score=42.92 Aligned_cols=42 Identities=31% Similarity=0.577 Sum_probs=28.7
Q ss_pred cccCCCCCCCceEEEecCCeeeeeccccCCc---ccccchhhhhHH
Q 013311 99 VQCYGCGNPETDIIITKTQMVNLKCAACGFV---SEVDMRDKLTTF 141 (445)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~---~~v~~~~kl~~~ 141 (445)
+.||.|+++.|.|+. +-..-.+.|..||-. +.+|...---+|
T Consensus 22 ~~Cp~C~~~~~~lv~-D~~~G~~vC~~CGlVl~e~~iD~g~EWR~f 66 (345)
T 4bbr_M 22 LTCPECKVYPPKIVE-RFSEGDVVCALCGLVLSDKLVDTRSEWRTF 66 (345)
T ss_dssp CCCSSCCCSSCCEEE-EGGGTEEEETTTCBEEESCCBCHHHHHTTT
T ss_pred CcCCCCCCCCCceeE-ECCCCcEEeCCCCCCccCcccccCccccCC
Confidence 479999996677877 334457899999965 556644433333
No 31
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=68.54 E-value=0.83 Score=32.75 Aligned_cols=30 Identities=27% Similarity=0.676 Sum_probs=23.4
Q ss_pred cccCCCCCCCceEEEecCCeeeeeccccCCc
Q 013311 99 VQCYGCGNPETDIIITKTQMVNLKCAACGFV 129 (445)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~ 129 (445)
..|..|+..+|-+-+ ++..-..-|+|||-.
T Consensus 5 ~~C~~C~tt~Tp~WR-~gp~G~~LCNaCGl~ 34 (46)
T 1gnf_A 5 RECVNCGATATPLWR-RDRTGHYLCNACGLY 34 (46)
T ss_dssp CCCTTTCCCCCSSCB-CCTTCCCBCSHHHHH
T ss_pred CCCCCcCCCCCCcCc-cCCCCCccchHHHHH
Confidence 469999999999998 442223789999964
No 32
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=68.29 E-value=4 Score=32.92 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=28.7
Q ss_pred hhccccCCCCCCCceEEE-e-cCCeeeeeccccCCcccc
Q 013311 96 KKYVQCYGCGNPETDIII-T-KTQMVNLKCAACGFVSEV 132 (445)
Q Consensus 96 ~~fVlC~~C~~peT~l~~-~-k~~~~~~~C~aCG~~~~v 132 (445)
.++-.||.|+...+.-++ + +.++-.+.|..||.....
T Consensus 21 ~t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 21 ETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp SSCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred CCeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 456689999999876655 3 457889999999987654
No 33
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=67.77 E-value=1.7 Score=30.48 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=21.7
Q ss_pred CCCceEEEe--cCCeeeeeccccCCccccc
Q 013311 106 NPETDIIIT--KTQMVNLKCAACGFVSEVD 133 (445)
Q Consensus 106 ~peT~l~~~--k~~~~~~~C~aCG~~~~v~ 133 (445)
||.|.|+.+ +..+-+..|.+||..-.+.
T Consensus 1 n~n~~ii~~ple~~~~YRvC~~CgkPi~ls 30 (44)
T 2lo3_A 1 NPNAQLIEDPLDKPIQYRVCEKCGKPLALT 30 (44)
T ss_dssp CCSSCCCCCCCCCCCCEEECTTTCCEEETT
T ss_pred CCccchhhcccCccccchhhcccCCcchHH
Confidence 688888874 4577799999999865554
No 34
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=67.38 E-value=3.1 Score=34.99 Aligned_cols=32 Identities=22% Similarity=0.472 Sum_probs=25.9
Q ss_pred cccCCCCCCCceEEE------ecCCeeeeeccccCCcc
Q 013311 99 VQCYGCGNPETDIII------TKTQMVNLKCAACGFVS 130 (445)
Q Consensus 99 VlC~~C~~peT~l~~------~k~~~~~~~C~aCG~~~ 130 (445)
+.||.|++.+..+.. ++.-++|..|..||++-
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w 110 (113)
T 3h0g_I 73 KECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAF 110 (113)
T ss_dssp SCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCC
T ss_pred cCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEE
Confidence 799999999988764 13467889999999873
No 35
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=66.15 E-value=2.7 Score=41.57 Aligned_cols=37 Identities=24% Similarity=0.510 Sum_probs=26.3
Q ss_pred hccccCCCCCCC-ceEEEe---cCCeeeeeccccCCccccc
Q 013311 97 KYVQCYGCGNPE-TDIIIT---KTQMVNLKCAACGFVSEVD 133 (445)
Q Consensus 97 ~fVlC~~C~~pe-T~l~~~---k~~~~~~~C~aCG~~~~v~ 133 (445)
..-.||.|+++= ..+++. .++.-+++|.-||..-.+.
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~ 221 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV 221 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec
Confidence 357899999954 445542 2566799999999876554
No 36
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=66.05 E-value=2.7 Score=38.53 Aligned_cols=30 Identities=27% Similarity=0.588 Sum_probs=23.3
Q ss_pred cccCCCCCCCceEEEecCCeeeeeccccCCc
Q 013311 99 VQCYGCGNPETDIIITKTQMVNLKCAACGFV 129 (445)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~ 129 (445)
..||.|++..+.|+. +...-.+.|..||..
T Consensus 22 ~~CPECGs~~t~IV~-D~erGE~VCsdCGLV 51 (197)
T 3k1f_M 22 LTCPECKVYPPKIVE-RFSEGDVVCALCGLV 51 (197)
T ss_dssp CCCTTTCCSSCCEEE-EGGGTEEEETTTCBB
T ss_pred eECcCCCCcCCeEEE-eCCCCEEEEcCCCCC
Confidence 479999996688887 334457889999986
No 37
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=65.39 E-value=2.3 Score=33.14 Aligned_cols=34 Identities=26% Similarity=0.604 Sum_probs=25.5
Q ss_pred cccCCCCCCCceEEEecCCeeeeeccccCCcccccchhhh
Q 013311 99 VQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVDMRDKL 138 (445)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~~~~kl 138 (445)
|-|| |++. ++. +.+.-...|. ||+.-.+.....|
T Consensus 5 v~C~-C~~~---~~~-~~~~kT~~C~-CG~~~~~~k~rif 38 (71)
T 1gh9_A 5 FRCD-CGRA---LYS-REGAKTRKCV-CGRTVNVKDRRIF 38 (71)
T ss_dssp EEET-TSCC---EEE-ETTCSEEEET-TTEEEECCSSSCB
T ss_pred EECC-CCCE---EEE-cCCCcEEECC-CCCeeeeceEEEE
Confidence 6799 9998 444 4566688998 9999988854433
No 38
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=64.61 E-value=1.4 Score=33.95 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=25.8
Q ss_pred HHHHhhccccCCCCCCCceEEEecCCeeeeeccccCCccccc
Q 013311 92 ENFIKKYVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVD 133 (445)
Q Consensus 92 ~~fi~~fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~ 133 (445)
+..+-....||.|+.|= .+.. ..+ .|.|.+||...||.
T Consensus 4 d~~LLeiL~CP~ck~~L-~~~~-~~g--~LvC~~c~~~YPI~ 41 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPL-RYLE-SEQ--LLVNERLNLAYRID 41 (67)
T ss_dssp CGGGTCCCBCTTTCCBC-EEET-TTT--EEEETTTTEEEEEE
T ss_pred CHHHHHHhCCCCCCCcC-eEeC-CCC--EEEcCCCCccccCC
Confidence 33455678999999952 2222 223 47799999998885
No 39
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=63.86 E-value=7.2 Score=31.96 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=22.1
Q ss_pred cccCCCCCCCceEEEecCCeeeeeccccCCcccc
Q 013311 99 VQCYGCGNPETDIIITKTQMVNLKCAACGFVSEV 132 (445)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v 132 (445)
.+||-|.--.-.+.++.+ .-.-+|-+||+.+.+
T Consensus 38 ~~CPfh~e~~pSf~V~~~-k~~~~Cf~cg~gGd~ 70 (103)
T 1d0q_A 38 GLCPFHGEKTPSFSVSPE-KQIFHCFGCGAGGNA 70 (103)
T ss_dssp ECCSSSCCSSCCEEEETT-TTEEEETTTCCEECH
T ss_pred EECCCCCCCCCcEEEEcC-CCEEEECCCCCCCCH
Confidence 489999743336777432 235789999987654
No 40
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=63.59 E-value=6.7 Score=33.38 Aligned_cols=80 Identities=15% Similarity=0.311 Sum_probs=32.6
Q ss_pred echHHHHHHhCCCchHHHHHHHHhhcCcccccCCCCeEEEEeecCHHHHHHHHHHHHhhccccCCCCCCCceEEEecCCe
Q 013311 39 VNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIITKTQM 118 (445)
Q Consensus 39 ~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~~~ii~G~~~~~~l~~~l~~fi~~fVlC~~C~~peT~l~~~k~~~ 118 (445)
+|+.-+-..|++.-....+- ..-.|..|.|-. || |+.--..+.++...= ..-..||.|+. +.+.+.-.+
T Consensus 9 ~~~~~~~~~~~~~~~~Makr-tKkVGi~GkyG~---RY---GaslRK~vkkiE~~q-~akytCPfCGk--~~vKR~avG- 77 (116)
T 3cc2_Z 9 PNLEGLMWPLGGQQTTMASK-SGKTGSSGRFGA---RY---GRVSRRRVAEIESEM-NEDHACPNCGE--DRVDRQGTG- 77 (116)
T ss_dssp --------------------------CGGGGTT---CS---CHHHHHHHHHHHHHH-HSCEECSSSCC--EEEEEEETT-
T ss_pred CchhhhhhhhhhhHHHHHhc-cCcccccccccc---cc---chHHHHHHHHHHHHh-ccCCcCCCCCC--ceeEecCce-
Confidence 45555555566554333222 223677777743 55 554444444442222 23357999997 456663334
Q ss_pred eeeeccccCCcc
Q 013311 119 VNLKCAACGFVS 130 (445)
Q Consensus 119 ~~~~C~aCG~~~ 130 (445)
+-.|..||..-
T Consensus 78 -IW~C~~Cgk~f 88 (116)
T 3cc2_Z 78 -IWQCSYCDYKF 88 (116)
T ss_dssp -EEEETTTCCEE
T ss_pred -eEECCCCCCEE
Confidence 45999999873
No 41
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=59.97 E-value=4.3 Score=39.98 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=26.0
Q ss_pred ccccCCCCCCCceEEEe------cCCeeeeeccccCCcc
Q 013311 98 YVQCYGCGNPETDIIIT------KTQMVNLKCAACGFVS 130 (445)
Q Consensus 98 fVlC~~C~~peT~l~~~------k~~~~~~~C~aCG~~~ 130 (445)
-+.||.|+..++.+..- +.-++|..|..||++-
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w 306 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRW 306 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCce
Confidence 46899999999987641 2467899999999863
No 42
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=59.35 E-value=1.2 Score=34.03 Aligned_cols=30 Identities=23% Similarity=0.560 Sum_probs=23.0
Q ss_pred cccCCCCCCCceEEEecCCeeeeeccccCCc
Q 013311 99 VQCYGCGNPETDIIITKTQMVNLKCAACGFV 129 (445)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~ 129 (445)
..|..|+..+|-+-+ ++..-..-|+|||-.
T Consensus 8 ~~C~~C~tt~Tp~WR-~gp~G~~LCNACGl~ 37 (63)
T 3dfx_A 8 TSCANCQTTTTTLWR-RNANGDPVCNACGLY 37 (63)
T ss_dssp CCCTTTCCSCCSSCC-CCTTSCCCCHHHHHH
T ss_pred CcCCCcCCCCCCccC-CCCCCCchhhHHHHH
Confidence 469999999999998 442223789999954
No 43
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=59.14 E-value=1.7 Score=34.02 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=23.2
Q ss_pred ccccCCCCCCCceEEEec--CCeeeeeccccCCc
Q 013311 98 YVQCYGCGNPETDIIITK--TQMVNLKCAACGFV 129 (445)
Q Consensus 98 fVlC~~C~~peT~l~~~k--~~~~~~~C~aCG~~ 129 (445)
-..|..|+..+|-+-+ + ... ..-|+|||-.
T Consensus 8 ~~~C~nC~tt~Tp~WR-rg~~~~-g~LCNACGl~ 39 (71)
T 2kae_A 8 SFQCSNCSVTETIRWR-NIRSKE-GIQCNACFIY 39 (71)
T ss_dssp CCCCSSSCCSCCSSCC-CCSSSS-CCCSSHHHHH
T ss_pred CCcCCccCCCCCCccc-cCCCCC-CccchHHHHH
Confidence 3679999999999998 4 222 2789999954
No 44
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=58.81 E-value=6.3 Score=40.03 Aligned_cols=32 Identities=16% Similarity=0.407 Sum_probs=22.1
Q ss_pred ccCCCCCCCceEEEecCCeeeeeccccCCcccc
Q 013311 100 QCYGCGNPETDIIITKTQMVNLKCAACGFVSEV 132 (445)
Q Consensus 100 lC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v 132 (445)
+||-|+--.-++.++.++ -+-+|-.||+.+.+
T Consensus 36 ~CPfh~ektpSf~V~~~k-~~~~CFgCg~gGd~ 67 (407)
T 2au3_A 36 NCPFHPDDTPSFYVSPSK-QIFKCFGCGVGGDA 67 (407)
T ss_dssp CCSSSCCSSCCEEEETTT-TEEEETTTCCEECH
T ss_pred eCcCCCCCCCeEEEECCC-CEEEECCCCCCCCH
Confidence 899997543457774322 25799999987654
No 45
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=57.90 E-value=2.3 Score=32.68 Aligned_cols=30 Identities=23% Similarity=0.445 Sum_probs=23.2
Q ss_pred ccccCCCCCCCceEEEecCCeeeeeccccCCcc
Q 013311 98 YVQCYGCGNPETDIIITKTQMVNLKCAACGFVS 130 (445)
Q Consensus 98 fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~ 130 (445)
-|.||.|.+.-|.+-. -.....|..||..=
T Consensus 7 ~VKCp~C~niq~VFSh---A~tvV~C~~Cg~~L 36 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDH---PSTIVKCIICGRTV 36 (66)
T ss_dssp EEECTTTCCEEEEESS---CSSCEECSSSCCEE
T ss_pred EEECCCCCCceEEEec---CceEEEcccCCCEE
Confidence 5999999997665543 45678999999863
No 46
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=57.53 E-value=6.8 Score=34.09 Aligned_cols=16 Identities=19% Similarity=0.816 Sum_probs=12.5
Q ss_pred ccccCCCCCCCceEEE
Q 013311 98 YVQCYGCGNPETDIII 113 (445)
Q Consensus 98 fVlC~~C~~peT~l~~ 113 (445)
|..||.|++|+..++.
T Consensus 107 ~~~CP~Cgs~~~~i~~ 122 (139)
T 3a43_A 107 FLACPKCGSHDFEVVK 122 (139)
T ss_dssp GCSCSSSSCCCEEEEE
T ss_pred CCcCccccCCccEEec
Confidence 5778888888887765
No 47
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=55.71 E-value=29 Score=28.59 Aligned_cols=68 Identities=22% Similarity=0.216 Sum_probs=48.8
Q ss_pred CCCceEEEeccCCCce--EEEechHHHHHHhCCCchHHHHHHHHhhcCcccccCCCC---eEEEEeecCHHHHHHHHHH
Q 013311 20 MPKMITKIEGRGNGIK--TNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTG---TSLVNGAHDTAKLAGLLEN 93 (445)
Q Consensus 20 mp~~~~k~eG~gng~k--T~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~---~~ii~G~~~~~~l~~~l~~ 93 (445)
-+.+.++++-| ||-| |+|.+|. -.-++.-+.|.|...+|+.|++-...+ ...|+|.|...-.+-|+..
T Consensus 16 ~~~v~I~~~~R-~g~K~VT~V~Gl~-----~~~dlk~laK~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~ 88 (101)
T 2xzm_F 16 QTHIHIRVEQR-RGRKCFTTVEGIP-----PEFDYEKIMKYWKKWLSCNATIVEEDEGKKVIKLNGDHRNQIQQFLSEE 88 (101)
T ss_dssp SCCEEEEEEEE-ETTEEEEEEECCC-----TTSCTHHHHHHHHHHHTSCCCEEECSTTCEEEEEESCCHHHHHHHHHHH
T ss_pred CCeEEEEEEec-cCCccEEEEecCC-----CchhHHHHHHHHHHHhcCCeEEecCCCCceEEEEeCcHHHHHHHHHHHc
Confidence 45677888766 4334 5677885 345788999999999999999843111 8999999987765555444
No 48
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=54.52 E-value=4.9 Score=26.41 Aligned_cols=13 Identities=38% Similarity=0.848 Sum_probs=10.7
Q ss_pred HhhhHHHHHhccC
Q 013311 426 KNAKPVIEWLQNA 438 (445)
Q Consensus 426 k~a~pFI~WLeEA 438 (445)
++++.||.||...
T Consensus 9 ~aakdFv~WL~ng 21 (31)
T 3c5t_B 9 EAVRLFIEWLKNG 21 (31)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 6788999999854
No 49
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=54.20 E-value=7.5 Score=37.31 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhccccCCCCCCCceEEEecCCeeeeeccccCCccc
Q 013311 87 LAGLLENFIKKYVQCYGCGNPETDIIITKTQMVNLKCAACGFVSE 131 (445)
Q Consensus 87 l~~~l~~fi~~fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~ 131 (445)
-...|..|-..+--|+.|+.|-.. ....+...|.+||....
T Consensus 96 ~a~~l~~w~~~~~fC~~CG~~~~~----~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 96 RGVQLAEFYRSHKYCGYCGHEMYP----SKTEWAMLCSHCRERYY 136 (269)
T ss_dssp HHHHHHHHHHTTSBCTTTCCBEEE----CSSSSCEEESSSSCEEC
T ss_pred HHHHHHhhhhcCCccccCCCcCcc----CCCceeeeCCCCCCEec
Confidence 345577888899999999988432 24557889999998644
No 50
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=54.18 E-value=3.5 Score=41.01 Aligned_cols=31 Identities=26% Similarity=0.547 Sum_probs=23.5
Q ss_pred cccCCCCCCCceEEEecCCeeeeeccccCCcc
Q 013311 99 VQCYGCGNPETDIIITKTQMVNLKCAACGFVS 130 (445)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~ 130 (445)
..||.|+++.+.|+. +...-.+.|..||..-
T Consensus 22 ~~Cp~Cg~~~~~iv~-D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 22 LTCPECKVYPPKIVE-RFSEGDVVCALCGLVL 52 (345)
T ss_dssp CCCSTTCCSCCCCCC-CSSSCSCCCSSSCCCC
T ss_pred CcCcCCCCCCCceEE-ECCCCCEecCCCCeEc
Confidence 479999998666776 3344478999999863
No 51
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=53.56 E-value=2.1 Score=32.93 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=22.9
Q ss_pred cccCCCCCCCceEEEecCCeeeeeccccCCcc
Q 013311 99 VQCYGCGNPETDIIITKTQMVNLKCAACGFVS 130 (445)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~ 130 (445)
..|..|+.-+|-+-+ ++..-..-|+|||-..
T Consensus 10 ~~C~~C~t~~Tp~WR-~gp~G~~LCNaCGl~~ 40 (66)
T 4gat_A 10 TTCTNCFTQTTPLWR-RNPEGQPLCNACGLFL 40 (66)
T ss_dssp CCCTTTCCCCCSSCE-EETTTEEECHHHHHHH
T ss_pred CCCCCCCCCCCCcCC-cCCCCCCccHHHHHHH
Confidence 479999999999988 3322126699999543
No 52
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.49 E-value=7.4 Score=28.10 Aligned_cols=30 Identities=23% Similarity=0.476 Sum_probs=19.9
Q ss_pred hccccCCCCCCCceEEEecCCeeeeeccccCCcc
Q 013311 97 KYVQCYGCGNPETDIIITKTQMVNLKCAACGFVS 130 (445)
Q Consensus 97 ~fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~ 130 (445)
.+-.||.|+++- .+.- .. --+.|..||...
T Consensus 18 ~~k~CP~CG~~~-fm~~-~~--~R~~C~kCG~t~ 47 (50)
T 3j20_Y 18 KNKFCPRCGPGV-FMAD-HG--DRWACGKCGYTE 47 (50)
T ss_dssp SSEECSSSCSSC-EEEE-CS--SEEECSSSCCEE
T ss_pred ecccCCCCCCce-EEec-CC--CeEECCCCCCEE
Confidence 366799999963 2322 22 357999999753
No 53
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=51.21 E-value=3.6 Score=31.38 Aligned_cols=29 Identities=28% Similarity=0.715 Sum_probs=22.1
Q ss_pred ccccCCCCCCCceEEEecCCeeeeeccccCCc
Q 013311 98 YVQCYGCGNPETDIIITKTQMVNLKCAACGFV 129 (445)
Q Consensus 98 fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~ 129 (445)
-|.||.|.+.-|.+- .-.....|..||..
T Consensus 15 ~VkCp~C~~~q~VFS---ha~t~V~C~~Cgt~ 43 (63)
T 3j20_W 15 RVKCIDCGNEQIVFS---HPATKVRCLICGAT 43 (63)
T ss_dssp EEECSSSCCEEEEES---SCSSCEECSSSCCE
T ss_pred EEECCCCCCeeEEEe---cCCeEEEccCcCCE
Confidence 489999998765543 34567899999986
No 54
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=50.64 E-value=8.9 Score=36.02 Aligned_cols=30 Identities=17% Similarity=0.425 Sum_probs=22.4
Q ss_pred ccccCCCCCCCceEEEecCCeeeeeccccCCcc
Q 013311 98 YVQCYGCGNPETDIIITKTQMVNLKCAACGFVS 130 (445)
Q Consensus 98 fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~ 130 (445)
...||.|+.-+. +.+..++ ...|..||+..
T Consensus 14 ~~~CP~Cg~~d~-~~~~~dg--~~~C~~Cg~~~ 43 (255)
T 1nui_A 14 HIPCDNCGSSDG-NSLFSDG--HTFCYVCEKWT 43 (255)
T ss_dssp EECCSSSCCSSC-EEEETTS--CEEETTTCCEE
T ss_pred CCcCCCCCCCCC-ceEeCCC--CeecccCCCcC
Confidence 578999999775 5543444 48999999864
No 55
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=49.94 E-value=10 Score=32.14 Aligned_cols=34 Identities=24% Similarity=0.669 Sum_probs=24.3
Q ss_pred ccCCCCC---CCceEEE-ecCC---eeeeeccccCCccccc
Q 013311 100 QCYGCGN---PETDIII-TKTQ---MVNLKCAACGFVSEVD 133 (445)
Q Consensus 100 lC~~C~~---peT~l~~-~k~~---~~~~~C~aCG~~~~v~ 133 (445)
+|..|++ |-....+ -.++ .+...|..||+..-.+
T Consensus 67 ~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p 107 (120)
T 1x0t_A 67 YCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYP 107 (120)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEE
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEc
Confidence 7999999 5433322 1333 7899999999987666
No 56
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=48.66 E-value=3.8 Score=30.37 Aligned_cols=33 Identities=24% Similarity=0.631 Sum_probs=24.8
Q ss_pred HhhccccCCCCCCCceEEEecCCeeeeecc--ccCCccccc
Q 013311 95 IKKYVQCYGCGNPETDIIITKTQMVNLKCA--ACGFVSEVD 133 (445)
Q Consensus 95 i~~fVlC~~C~~peT~l~~~k~~~~~~~C~--aCG~~~~v~ 133 (445)
+-....||.|+.| |..+. -.+.|. +||...+|.
T Consensus 7 lL~iL~CP~c~~~---L~~~~---~~L~C~~~~c~~~YPI~ 41 (56)
T 2kpi_A 7 LLEILACPACHAP---LEERD---AELICTGQDCGLAYPVR 41 (56)
T ss_dssp CTTSCCCSSSCSC---EEEET---TEEEECSSSCCCEEEEE
T ss_pred HHhheeCCCCCCc---ceecC---CEEEcCCcCCCcEEeeE
Confidence 4456789999996 55523 357899 999998874
No 57
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=47.09 E-value=11 Score=32.17 Aligned_cols=34 Identities=21% Similarity=0.596 Sum_probs=24.2
Q ss_pred ccCCCCC---CCceEEE-ecCC---eeeeeccccCCccccc
Q 013311 100 QCYGCGN---PETDIII-TKTQ---MVNLKCAACGFVSEVD 133 (445)
Q Consensus 100 lC~~C~~---peT~l~~-~k~~---~~~~~C~aCG~~~~v~ 133 (445)
+|..|++ |-....+ ..++ .+...|..||+..-.+
T Consensus 62 ~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~p 102 (123)
T 2k3r_A 62 YCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYP 102 (123)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEe
Confidence 7999999 5433322 1333 7899999999987766
No 58
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=45.51 E-value=4.3 Score=32.46 Aligned_cols=29 Identities=21% Similarity=0.482 Sum_probs=22.5
Q ss_pred ccccCCCCCCCceEEEecCCeeeeeccccCCc
Q 013311 98 YVQCYGCGNPETDIIITKTQMVNLKCAACGFV 129 (445)
Q Consensus 98 fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~ 129 (445)
-|.||.|.+.-|.+- .-.....|..||..
T Consensus 32 ~VkCp~C~n~q~VFS---hA~t~V~C~~Cg~~ 60 (81)
T 2xzm_6 32 DVKCAQCQNIQMIFS---NAQSTIICEKCSAI 60 (81)
T ss_dssp EEECSSSCCEEEEET---TCSSCEECSSSCCE
T ss_pred EeECCCCCCeeEEEe---cCccEEEccCCCCE
Confidence 589999999765544 34567899999987
No 59
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=45.41 E-value=6 Score=31.68 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=22.5
Q ss_pred ccccCCCCCCCceEEEecCCeeeeeccccCCcc
Q 013311 98 YVQCYGCGNPETDIIITKTQMVNLKCAACGFVS 130 (445)
Q Consensus 98 fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~ 130 (445)
-|.|+.|.+.-|.+-. -.....|..||..=
T Consensus 34 ~VkCp~C~~~q~VFSh---a~t~V~C~~Cg~~L 63 (82)
T 3u5c_b 34 DVKCPGCLNITTVFSH---AQTAVTCESCSTIL 63 (82)
T ss_dssp EEECTTSCSCEEEESB---CSSCCCCSSSCCCC
T ss_pred EEECCCCCCeeEEEec---CCeEEEccccCCEE
Confidence 4899999987665544 45578899999763
No 60
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=44.34 E-value=4.7 Score=35.05 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=0.0
Q ss_pred cccCCCCCCCceEEE------ecCCeeeeeccccCCcc
Q 013311 99 VQCYGCGNPETDIII------TKTQMVNLKCAACGFVS 130 (445)
Q Consensus 99 VlC~~C~~peT~l~~------~k~~~~~~~C~aCG~~~ 130 (445)
+.||.|++.+..+.. ++.-++|..|..||++-
T Consensus 93 ~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w 130 (133)
T 3qt1_I 93 RECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRW 130 (133)
T ss_dssp --------------------------------------
T ss_pred CCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEe
Confidence 799999999987653 13467899999999863
No 61
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=44.09 E-value=8.1 Score=32.40 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=24.7
Q ss_pred cccCCCCCCCceEEEec-CCeeeeeccccCCcccccc
Q 013311 99 VQCYGCGNPETDIIITK-TQMVNLKCAACGFVSEVDM 134 (445)
Q Consensus 99 VlC~~C~~peT~l~~~k-~~~~~~~C~aCG~~~~v~~ 134 (445)
-.||.|+|.= .+...+ ++...+.|..||+..+++.
T Consensus 5 ~FCp~Cgn~L-~~~~~~~~~~~~~~C~~C~y~~~~~~ 40 (113)
T 3h0g_I 5 QYCIECNNML-YPREDKVDRVLRLACRNCDYSEIAAT 40 (113)
T ss_dssp CCCSSSCCCC-EECCCTTTCCCCEECSSSCCEECCSC
T ss_pred eeCcCCCCEe-eEcccCCCCeeEEECCCCCCeEEcCC
Confidence 4699999972 122211 3567889999999988873
No 62
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=43.71 E-value=9.2 Score=30.59 Aligned_cols=30 Identities=17% Similarity=0.416 Sum_probs=20.0
Q ss_pred ccccCCCCCCCceEEEecCCeeeeeccccCCccc
Q 013311 98 YVQCYGCGNPETDIIITKTQMVNLKCAACGFVSE 131 (445)
Q Consensus 98 fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~ 131 (445)
--.||.|+.+ ++. .-..-.++|..||..-.
T Consensus 27 ~y~Cp~CG~~---~v~-r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 27 DHACPNCGED---RVD-RQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp CEECSSSCCE---EEE-EEETTEEEETTTCCEEE
T ss_pred cCcCCCCCCc---cee-ccCCCeEECCCCCCEec
Confidence 3479999973 333 22344789999998733
No 63
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=42.12 E-value=7.8 Score=37.30 Aligned_cols=108 Identities=19% Similarity=0.353 Sum_probs=63.3
Q ss_pred CceEEEechHH-------HHHHhCCCchHHHHHHHHhhcCcccccCC-CCeEEEEeecCHHHHHHHHHHHHhhcc-----
Q 013311 33 GIKTNVVNMVD-------IAKALARPPSYTTKYFGNELGAQSKFDEK-TGTSLVNGAHDTAKLAGLLENFIKKYV----- 99 (445)
Q Consensus 33 g~kT~i~N~~~-------ia~~L~R~p~~~~ky~~~ELg~~~~~~~~-~~~~ii~G~~~~~~l~~~l~~fi~~fV----- 99 (445)
+..++.+||.+ +|..|-..|..++.+|..-+-.--.++.. .=.+.+.|-.....|.++=-.+|.++|
T Consensus 40 ~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~~~~~~~~~~~vr~~~~~~~~~iR~L~~~~igkLV~v~Gi 119 (279)
T 1ltl_A 40 NVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNIDRLRKNVDLNIRFSGISNVIPLRELRSKFIGKFVAVDGI 119 (279)
T ss_dssp SCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHHHHTTTCTTCCCCCCEEEEECCSCBCCGGGCCGGGTTSEEEEEEE
T ss_pred CCeEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHhccccCCeeEEEEEECCCCCCCcccCChhhCCCEEEEEEE
Confidence 35899999986 56688888888888886544221111110 013444555445555665556666665
Q ss_pred ----------------ccCCCCCCCceEEEecCC-eeeeeccccCCcccccchhhhhHHH
Q 013311 100 ----------------QCYGCGNPETDIIITKTQ-MVNLKCAACGFVSEVDMRDKLTTFI 142 (445)
Q Consensus 100 ----------------lC~~C~~peT~l~~~k~~-~~~~~C~aCG~~~~v~~~~kl~~~i 142 (445)
.|..|+. .+.+..+.++ ..-..|..||..+ ....+..+.|+
T Consensus 120 V~r~S~V~p~~~~~~f~C~~C~~-~~~v~~~~~~~~~P~~Cp~C~~~~-f~l~~~~s~f~ 177 (279)
T 1ltl_A 120 VRKTDEIRPRIVKAVFECRGCMR-HHAVTQSTNMITEPSLCSECGGRS-FRLLQDESEFL 177 (279)
T ss_dssp EEEECCCEEEEEEEEEEETTTCC-EEEEECSSSSCCCCSCCTTTCCCC-EEECGGGCEEE
T ss_pred EEEecceEEEEEEEEEEcCCCCC-EEEEEecCCcccCCCcCCCCCCCC-cEEeccccEEE
Confidence 6888884 2222221111 1235788898876 55566667665
No 64
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=41.37 E-value=9.6 Score=33.76 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=23.3
Q ss_pred ccccCCCCCCCceEEEecCCeeeeeccccCCcc
Q 013311 98 YVQCYGCGNPETDIIITKTQMVNLKCAACGFVS 130 (445)
Q Consensus 98 fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~ 130 (445)
|--||.|+.+.+....+........|..||...
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~ 35 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCHTIH 35 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTTEEE
T ss_pred cccCchhCCccccccccCCCCcceECCCCCCcc
Confidence 567999999988655422244567899999433
No 65
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=40.96 E-value=17 Score=36.23 Aligned_cols=50 Identities=20% Similarity=0.433 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHhhc------cccCCCCCCC--ceEEE-------e-----cCCeeeeeccccCCcccc
Q 013311 83 DTAKLAGLLENFIKKY------VQCYGCGNPE--TDIII-------T-----KTQMVNLKCAACGFVSEV 132 (445)
Q Consensus 83 ~~~~l~~~l~~fi~~f------VlC~~C~~pe--T~l~~-------~-----k~~~~~~~C~aCG~~~~v 132 (445)
..--|..||.=|=..| -.|+.|+++. |...+ + -+++-..+|..||+.+-.
T Consensus 98 ~d~ll~~LL~WFk~~fF~wvn~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~~rF 167 (335)
T 1x3z_A 98 TDYLVKELLRYFKQDFFKWCNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRF 167 (335)
T ss_dssp HHHHHHHHHHHHHHTTCEECSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEEE
T ss_pred hHHHHHHHHHHHHhcCCEeeCCCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCccccc
Confidence 3346788888886654 3699999986 34310 0 014667899999997654
No 66
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=40.82 E-value=18 Score=27.90 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=20.3
Q ss_pred ccCCCCCCCceE-----EEe-cCC------eeeeeccccCCcccc
Q 013311 100 QCYGCGNPETDI-----IIT-KTQ------MVNLKCAACGFVSEV 132 (445)
Q Consensus 100 lC~~C~~peT~l-----~~~-k~~------~~~~~C~aCG~~~~v 132 (445)
.||.|+..++.- ..+ ++. +-...|..||..-.-
T Consensus 4 ~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~~ 48 (78)
T 3ga8_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (78)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEECC
T ss_pred ECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEEC
Confidence 699999864421 111 332 234679999987543
No 67
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=39.94 E-value=10 Score=29.94 Aligned_cols=31 Identities=19% Similarity=0.489 Sum_probs=22.5
Q ss_pred cccCCCC---------CCCceEEEecCCeeeeeccccCCcccccchhh
Q 013311 99 VQCYGCG---------NPETDIIITKTQMVNLKCAACGFVSEVDMRDK 137 (445)
Q Consensus 99 VlC~~C~---------~peT~l~~~k~~~~~~~C~aCG~~~~v~~~~k 137 (445)
-.||.|. .|+| .-+-.|.+||.+.+.++..+
T Consensus 18 WVCpICsfsN~v~s~fdp~~--------~~lPpC~aCGIkP~~~~i~~ 57 (76)
T 2j9u_B 18 WVCPICMVSNETQGEFTKDT--------LPTPICINCGVPADYELTKS 57 (76)
T ss_dssp EECTTTCCEEEESSCCCTTC--------SSCCBCTTTCCBCCHHHHGG
T ss_pred eECccccccCcCccccCCCC--------CCCCcccccCccCCHHHHHH
Confidence 3599998 4443 55788999999988775443
No 68
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=39.73 E-value=20 Score=30.36 Aligned_cols=36 Identities=19% Similarity=0.445 Sum_probs=24.8
Q ss_pred ccccCCCCCCCceEEEecCCeeeeeccccCCccccc
Q 013311 98 YVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVD 133 (445)
Q Consensus 98 fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~ 133 (445)
..-||.|+|-=.--.-...+...+.|..||+..+++
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECS
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCeeecC
Confidence 357999998432111102467889999999998876
No 69
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=38.21 E-value=6 Score=31.94 Aligned_cols=29 Identities=31% Similarity=0.532 Sum_probs=21.5
Q ss_pred cccCCCCCCCceEEEecCCeeeeeccccCCcc
Q 013311 99 VQCYGCGNPETDIIITKTQMVNLKCAACGFVS 130 (445)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~ 130 (445)
|.|+.|.+.-|.+- .-.....|..||..=
T Consensus 37 VkCp~C~~~~~VFS---hA~t~V~C~~CgtvL 65 (86)
T 3iz6_X 37 VKCQGCFNITTVFS---HSQTVVVCPGCQTVL 65 (86)
T ss_dssp EECTTTCCEEEEET---TCSSCCCCSSSCCCC
T ss_pred EECCCCCCeeEEEe---cCCcEEEccCCCCEe
Confidence 99999998655443 345678899999763
No 70
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=37.78 E-value=21 Score=29.78 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=11.3
Q ss_pred cc-ccCCCCCCCceEEE
Q 013311 98 YV-QCYGCGNPETDIII 113 (445)
Q Consensus 98 fV-lC~~C~~peT~l~~ 113 (445)
+. .||.|++|.+.++-
T Consensus 89 ~~~~CP~Cgs~~~~i~~ 105 (119)
T 2kdx_A 89 DYGVCEKCHSKNVIITQ 105 (119)
T ss_dssp TTCCCSSSSSCCCEEEE
T ss_pred CCCcCccccCCCcEEec
Confidence 55 68888877777654
No 71
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=37.53 E-value=8.4 Score=31.68 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=19.4
Q ss_pred CCCceEEEe--cCCeeeeeccccCCcccc
Q 013311 106 NPETDIIIT--KTQMVNLKCAACGFVSEV 132 (445)
Q Consensus 106 ~peT~l~~~--k~~~~~~~C~aCG~~~~v 132 (445)
+|.|.|+.+ +..+-+..|.+||..-.+
T Consensus 59 n~nt~ii~~~Ld~~~~YRvCn~CGkPI~l 87 (96)
T 3mhs_E 59 NPNAQLIEDPLDKPIQYRVCEKCGKPLAL 87 (96)
T ss_dssp CTTCCCCSSTTSSSCCCEEETTTCCEECG
T ss_pred CCcchhhcccCCCcccchhhhccCCceeH
Confidence 678887764 335678999999976444
No 72
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=37.49 E-value=13 Score=23.96 Aligned_cols=12 Identities=33% Similarity=0.891 Sum_probs=9.9
Q ss_pred HhhhHHHHHhcc
Q 013311 426 KNAKPVIEWLQN 437 (445)
Q Consensus 426 k~a~pFI~WLeE 437 (445)
.+++.||+||..
T Consensus 17 ~aak~fv~wL~~ 28 (29)
T 2g49_C 17 RRAQDFVQWLMN 28 (29)
T ss_pred HHHHHHHHHHhc
Confidence 568899999964
No 73
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=36.19 E-value=16 Score=24.33 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=10.6
Q ss_pred HhhhHHHHHhccC
Q 013311 426 KNAKPVIEWLQNA 438 (445)
Q Consensus 426 k~a~pFI~WLeEA 438 (445)
.+++.||+||...
T Consensus 17 ~aak~fl~wL~~~ 29 (33)
T 2l63_A 17 LAARDFINWLIQT 29 (33)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 5688999999753
No 74
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=36.14 E-value=1.3e+02 Score=28.68 Aligned_cols=109 Identities=14% Similarity=0.152 Sum_probs=59.6
Q ss_pred ChhHHHHHHHH-HHhcCCChHHHHHHhhhcCCChhhHHHHHHHHHHhhhh---------hhHHHHHHhhHHHHHHhccCc
Q 013311 295 PNTHLADQMKD-FLKKGASASQFKSFLGSLSGTPQEVMDALFVALFDGIE---------KGFAKEVTKKKNYLAAATQEE 364 (445)
Q Consensus 295 ~~~e~v~~lk~-~l~~~~s~~ei~~el~~~~l~~~~v~~vl~eaLf~~i~---------~~i~k~i~k~~~lL~~~~~~~ 364 (445)
|..+++-.|-- .+ ...+.+.+...++.+++...++...++.++...-. ..++..+.+|.+-|.-.+-+
T Consensus 3 P~~~fir~Li~~~L-~~~~~~~vlk~lrKl~W~D~e~~~~l~k~l~~~~~~ky~nI~~lA~ll~~L~~~~~~~~i~vVD- 80 (248)
T 1uw4_B 3 PLQEYVRKLLYKDL-SKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVD- 80 (248)
T ss_dssp HHHHHHHHHHHTTC-STTSHHHHHHHHHTSCTTSHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHTTTCHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHc-ccccHHHHHHHHHcCCCCcHHHHHHHHHHhcchhhcccchHHHHHHHHHHHHhhChHHhhhhHH-
Confidence 55555544431 22 22355667777788888888877777777765410 02233344443322222211
Q ss_pred hhHHHHHHHHHHHhcccCh----hhHHHHHHHHHHHhhCCcchhHHHHHH
Q 013311 365 GSQMVLLHSLESFCGKARP----AAVKEVALVLKALYDNDLLEEEFILDW 410 (445)
Q Consensus 365 ~~Q~~lL~alE~~~~~~~~----~l~~~~~~ILk~LYD~DIleEE~Il~W 410 (445)
.+|..|...+....+ ..+ .....|-.||+..+|++.+|+.=
T Consensus 81 ----~vlE~Ir~gLE~n~~~~nQrRi-a~vkyLgELYny~lv~s~vIf~~ 125 (248)
T 1uw4_B 81 ----GVLEDIRLGMEVNQPKFNQRRI-SSAKFLGELYNYRMVESAVIFRT 125 (248)
T ss_dssp ----HHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHTTSSCHHHHHHH
T ss_pred ----HHHHHHHHHHhcCcHHHHHHHH-HHHHHHHHHHHhcCCChHHHHHH
Confidence 344444333322222 222 34567999999999999999654
No 75
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=34.95 E-value=21 Score=29.63 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=20.7
Q ss_pred ccCCCCCCCceEEE-----e-cCC------eeeeeccccCCcccc
Q 013311 100 QCYGCGNPETDIII-----T-KTQ------MVNLKCAACGFVSEV 132 (445)
Q Consensus 100 lC~~C~~peT~l~~-----~-k~~------~~~~~C~aCG~~~~v 132 (445)
.||.|+...+.... + ++. +-...|..||..-..
T Consensus 4 ~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~d 48 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (133)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECC
T ss_pred CCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEeec
Confidence 79999987543221 1 332 235679999987543
No 76
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=34.77 E-value=17 Score=23.59 Aligned_cols=12 Identities=17% Similarity=0.559 Sum_probs=9.7
Q ss_pred HhhhHHHHHhcc
Q 013311 426 KNAKPVIEWLQN 437 (445)
Q Consensus 426 k~a~pFI~WLeE 437 (445)
.+++.||+||-.
T Consensus 17 ~~ak~fv~wLl~ 28 (30)
T 1t5q_A 17 IHQQDFVNWLLA 28 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 567899999964
No 77
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=33.95 E-value=22 Score=36.42 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=23.1
Q ss_pred cccccCCCceEEEec-cCCCceEEEec-hHHHHHHhCCC
Q 013311 15 FYRYKMPKMITKIEG-RGNGIKTNVVN-MVDIAKALARP 51 (445)
Q Consensus 15 ~~Rykmp~~~~k~eG-~gng~kT~i~N-~~~ia~~L~R~ 51 (445)
+...++|.|.+.|.. .+.|.=|.|.. +..|...|.+.
T Consensus 86 tati~IPEL~~eI~pg~~~G~iTTVEGlL~~~~~~L~~~ 124 (404)
T 2qkd_A 86 SATTRIPELDFEIPAFSQKGALTTVEGLISRAISGLEQD 124 (404)
T ss_dssp TCEEEEGGGTEEECTTSSCCEEEEHHHHHHHHHHHHHTT
T ss_pred CcEEEeeeeeEEecCccCCceEEeHHHHHHHHHHHHHhh
Confidence 566788999999885 24454444433 34566666665
No 78
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=33.66 E-value=17 Score=25.13 Aligned_cols=13 Identities=38% Similarity=0.848 Sum_probs=10.5
Q ss_pred HhhhHHHHHhccC
Q 013311 426 KNAKPVIEWLQNA 438 (445)
Q Consensus 426 k~a~pFI~WLeEA 438 (445)
.+++.||+||...
T Consensus 17 ~aak~fv~wL~~~ 29 (39)
T 1jrj_A 17 EAVRLFIEWLKNG 29 (39)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 5688999999753
No 79
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G-PR coupled receptor, glycoprotein, membrane, receptor, transdu transmembrane; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=31.99 E-value=20 Score=23.34 Aligned_cols=12 Identities=42% Similarity=0.775 Sum_probs=10.0
Q ss_pred HhhhHHHHHhcc
Q 013311 426 KNAKPVIEWLQN 437 (445)
Q Consensus 426 k~a~pFI~WLeE 437 (445)
+.++.||.||..
T Consensus 17 ~~ak~Fv~wL~~ 28 (31)
T 3iol_B 17 QAAKEFIAWLVK 28 (31)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc
Confidence 678899999964
No 80
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.95 E-value=10 Score=27.63 Aligned_cols=28 Identities=32% Similarity=0.595 Sum_probs=19.7
Q ss_pred HHhhccccCCCCCCCceEEEecCCeeeeeccccCCc
Q 013311 94 FIKKYVQCYGCGNPETDIIITKTQMVNLKCAACGFV 129 (445)
Q Consensus 94 fi~~fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~ 129 (445)
.....-+|+.|+.. . ..-.-.|.-||+.
T Consensus 10 r~~~k~iCpkC~a~-----~---~~gaw~CrKCG~~ 37 (51)
T 3j21_g 10 RIFKKYVCLRCGAT-----N---PWGAKKCRKCGYK 37 (51)
T ss_dssp HSSSEEECTTTCCE-----E---CTTCSSCSSSSSC
T ss_pred HHhCCccCCCCCCc-----C---CCCceecCCCCCc
Confidence 33445679999986 2 2336689899998
No 81
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=31.21 E-value=19 Score=25.21 Aligned_cols=14 Identities=14% Similarity=0.503 Sum_probs=11.3
Q ss_pred HhhhHHHHHhccCc
Q 013311 426 KNAKPVIEWLQNAE 439 (445)
Q Consensus 426 k~a~pFI~WLeEAE 439 (445)
.+++.||.||...-
T Consensus 17 ~~akdFv~WL~~~k 30 (42)
T 2b4n_A 17 IHQQDFVNWLLAQK 30 (42)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC
Confidence 66889999998654
No 82
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=30.70 E-value=26 Score=28.59 Aligned_cols=41 Identities=22% Similarity=0.369 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhccccCCCCCCCceEEEecCCeeeeeccccCCccc
Q 013311 86 KLAGLLENFIKKYVQCYGCGNPETDIIITKTQMVNLKCAACGFVSE 131 (445)
Q Consensus 86 ~l~~~l~~fi~~fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~ 131 (445)
.+.++-..=-.+| .||.|+.. .+.+ ..+-+-+|..||..-.
T Consensus 25 ~vkkie~~q~~ky-~CpfCgk~--~vkR--~a~GIW~C~~Cg~~~A 65 (92)
T 3iz5_m 25 QIKKMEVSQHSKY-FCEFCGKF--AVKR--KAVGIWGCKDCGKVKA 65 (92)
T ss_dssp HHHHHHHHHHSCB-CCTTTCSS--CBEE--EETTEEECSSSCCEEE
T ss_pred HHHHHHHHHhccc-cCcccCCC--eeEe--cCcceEEcCCCCCEEe
Confidence 3444433334455 79999987 3554 2233568999987643
No 83
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=30.61 E-value=17 Score=31.47 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=24.2
Q ss_pred ccccCCCCCCCceEEEecCCeeeeeccccCCcccccc
Q 013311 98 YVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVDM 134 (445)
Q Consensus 98 fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~~ 134 (445)
+-.||.|+|-=.--.-..++.+.+.|..||+..+++.
T Consensus 24 ~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~~~~ 60 (133)
T 3qt1_I 24 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGS 60 (133)
T ss_dssp CCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCCCSC
T ss_pred CeeCCCCCCEeeECccCCCceeEEECCCCCCcEEcCC
Confidence 4569999993111110013567899999999887763
No 84
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=30.28 E-value=19 Score=27.06 Aligned_cols=26 Identities=23% Similarity=0.558 Sum_probs=17.0
Q ss_pred ccccCCCCCCCceEEEecCCeeeeeccccCCccccc
Q 013311 98 YVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVD 133 (445)
Q Consensus 98 fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~ 133 (445)
.+.|+.|+.. +| .-.|..||..+.+.
T Consensus 6 mr~C~~CgvY--TL--------k~~CP~CG~~T~~~ 31 (60)
T 2apo_B 6 MKKCPKCGLY--TL--------KEICPKCGEKTVIP 31 (60)
T ss_dssp CEECTTTCCE--ES--------SSBCSSSCSBCBCC
T ss_pred ceeCCCCCCE--ec--------cccCcCCCCcCCCC
Confidence 4678888432 11 23499999887665
No 85
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=29.36 E-value=9.6 Score=32.25 Aligned_cols=30 Identities=27% Similarity=0.650 Sum_probs=23.6
Q ss_pred cccCCCCCCCceEEEecCCeeeeeccccCCc
Q 013311 99 VQCYGCGNPETDIIITKTQMVNLKCAACGFV 129 (445)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~ 129 (445)
-.|..|+..+|-+-+ .+..-..-|+|||-.
T Consensus 6 ~~C~~Cg~~~Tp~WR-r~~~g~~lCnaCgl~ 35 (115)
T 4hc9_A 6 RECVNCGATSTPLWR-RDGTGHYLCNACGLY 35 (115)
T ss_dssp CCCTTTCCSCCSSCE-ECTTSCEECHHHHHH
T ss_pred CCCCCCCCccCCcce-ECCCCCCcCcchhhh
Confidence 469999999999998 443335799999963
No 86
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=29.02 E-value=33 Score=27.30 Aligned_cols=9 Identities=22% Similarity=0.733 Sum_probs=6.4
Q ss_pred cccCCCCCC
Q 013311 99 VQCYGCGNP 107 (445)
Q Consensus 99 VlC~~C~~p 107 (445)
+.||.|..|
T Consensus 3 ~~CP~C~~~ 11 (81)
T 2jrp_A 3 ITCPVCHHA 11 (81)
T ss_dssp CCCSSSCSC
T ss_pred CCCCCCCCc
Confidence 567777765
No 87
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=28.96 E-value=35 Score=28.89 Aligned_cols=65 Identities=9% Similarity=0.000 Sum_probs=45.6
Q ss_pred ceEEEe--ccCCCceEEEechHHHHHHhCCCchHHHHHHHHhhcCcccccCCCCeEEEEeecCHHHHHHHHHH
Q 013311 23 MITKIE--GRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVNGAHDTAKLAGLLEN 93 (445)
Q Consensus 23 ~~~k~e--G~gng~kT~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~~~ii~G~~~~~~l~~~l~~ 93 (445)
+.++++ ||++=.=|+|.+|....- ++.-+.|+|...+|+.|++- ++...|+|.|...-.+-|+..
T Consensus 33 V~I~~er~gR~GK~VT~V~Gl~~~~~----dlk~laK~LKkk~acgGtVk--~~~IeiQGD~r~~i~~~L~~~ 99 (116)
T 1d1r_A 33 VRIQRQTSGRKGKGVCLITGVDLDDA----ELTKLAAELKKKCGCGGAVK--DGVIEIQGDKRDLLKSLLEAK 99 (116)
T ss_dssp EEEEECCCSSSSCCCEEEECCCSCHH----HHHHHHHHHTTSSSSCCBCC--SSCEEECSCCHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCeEEEEeCCcCchh----hHHHHHHHHHHHhcCCcEEc--CCEEEEeCcHHHHHHHHHHHc
Confidence 455556 233334588899863111 25668899999999999994 589999999987766655554
No 88
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=28.13 E-value=10 Score=32.03 Aligned_cols=30 Identities=23% Similarity=0.560 Sum_probs=23.1
Q ss_pred cccCCCCCCCceEEEecCCeeeeeccccCCc
Q 013311 99 VQCYGCGNPETDIIITKTQMVNLKCAACGFV 129 (445)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~ 129 (445)
..|..|+..+|.+-+ ++..-..-|+|||-.
T Consensus 60 ~~C~~C~t~~tp~WR-r~~~g~~lCNaCgl~ 89 (115)
T 4hc9_A 60 TSCANCQTTTTTLWR-RNANGDPVCNACGLY 89 (115)
T ss_dssp CCCTTTCCSCCSSCE-ECTTSCEECHHHHHH
T ss_pred ccCCCcCCCCcceeE-ECCCCCCcchHHHHH
Confidence 689999999999988 432224669999954
No 89
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=27.99 E-value=17 Score=27.30 Aligned_cols=25 Identities=20% Similarity=0.663 Sum_probs=17.8
Q ss_pred hhccccCCCCCCCceEEEecCCeeeeeccccCCc
Q 013311 96 KKYVQCYGCGNPETDIIITKTQMVNLKCAACGFV 129 (445)
Q Consensus 96 ~~fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~ 129 (445)
-.+|.|+.|+.+ + +....|..||.-
T Consensus 28 p~l~~c~~cG~~-----~----~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 28 PNLTECPQCHGK-----K----LSHHICPNCGYY 52 (60)
T ss_dssp CCCEECTTTCCE-----E----CTTBCCTTTCBS
T ss_pred CCceECCCCCCE-----e----CCceEcCCCCcC
Confidence 357889999976 2 345678889864
No 90
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=27.06 E-value=15 Score=28.43 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=21.7
Q ss_pred ccccCCCCCCCceEEEecCCeeeeeccccCCcccccchh
Q 013311 98 YVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVDMRD 136 (445)
Q Consensus 98 fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~~~~ 136 (445)
.-+|+.|+..-.. . .. -..+|..||++-....|.
T Consensus 28 ~Y~C~~CG~~~e~-~--~~--d~irCp~CG~RILyK~R~ 61 (70)
T 1twf_L 28 KYICAECSSKLSL-S--RT--DAVRCKDCGHRILLKART 61 (70)
T ss_dssp CEECSSSCCEECC-C--TT--STTCCSSSCCCCCBCCCC
T ss_pred EEECCCCCCccee-C--CC--CCccCCCCCceEeEecCC
Confidence 3479999974221 1 12 235899999976666554
No 91
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=25.92 E-value=10 Score=31.94 Aligned_cols=49 Identities=20% Similarity=0.410 Sum_probs=27.9
Q ss_pred hccccCCCCCCCceEEEecCCeeeeeccccCCc----ccccchhhhhHHHhcCC
Q 013311 97 KYVQCYGCGNPETDIIITKTQMVNLKCAACGFV----SEVDMRDKLTTFILKNP 146 (445)
Q Consensus 97 ~fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~----~~v~~~~kl~~~i~k~p 146 (445)
.|..|-.|+++...-.- .+..-...|.+|-.. +.+....-..+|.|+.+
T Consensus 4 ~~~~C~eC~~~~~d~~l-~~~F~~~VC~~Cr~~~~~~~liTkt~ak~dYlL~d~ 56 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYL-MDHFDLPTCDDCRDADDKHKLITKTEAKQEYLLKDC 56 (111)
T ss_dssp CCEECTTTCCEESCSSS-TTTTSCCCCTTTCSSSSSCCCEEHHHHTTTTTCCSS
T ss_pred CCCccccCCChhhHHHH-HHhCCeeechhhcccccccccccHHHHHHHHcCCch
Confidence 47789999987543222 233446788888654 22222233345666654
No 92
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=24.89 E-value=25 Score=26.49 Aligned_cols=26 Identities=27% Similarity=0.660 Sum_probs=16.0
Q ss_pred ccccCCCCCCCceEEEecCCeeeeeccccCCccccc
Q 013311 98 YVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVD 133 (445)
Q Consensus 98 fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~ 133 (445)
...|+.|+.. + +.-.|..||..+.+.
T Consensus 5 mr~C~~Cg~Y--T--------Lk~~CP~CG~~t~~a 30 (60)
T 2aus_D 5 IRKCPKCGRY--T--------LKETCPVCGEKTKVA 30 (60)
T ss_dssp CEECTTTCCE--E--------SSSBCTTTCSBCEES
T ss_pred ceECCCCCCE--E--------ccccCcCCCCccCCC
Confidence 3568888321 1 122488899887665
No 93
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.45 E-value=28 Score=27.82 Aligned_cols=27 Identities=22% Similarity=0.490 Sum_probs=18.8
Q ss_pred cccCCCCCCCceEEEecCCeeeeeccccCCc
Q 013311 99 VQCYGCGNPETDIIITKTQMVNLKCAACGFV 129 (445)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~ 129 (445)
-.||.|+.. .+.+ ...-+-+|..||..
T Consensus 36 y~CpfCGk~--~vkR--~a~GIW~C~kCg~~ 62 (83)
T 3j21_i 36 HTCPVCGRK--AVKR--ISTGIWQCQKCGAT 62 (83)
T ss_dssp BCCSSSCSS--CEEE--EETTEEEETTTCCE
T ss_pred cCCCCCCCc--eeEe--cCcCeEEcCCCCCE
Confidence 369999987 4554 22335689999876
No 94
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=24.44 E-value=31 Score=26.18 Aligned_cols=34 Identities=29% Similarity=0.627 Sum_probs=24.0
Q ss_pred ccccCCCCCCCceEEEecCCeeeeeccccCCcccccchh
Q 013311 98 YVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVDMRD 136 (445)
Q Consensus 98 fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~~~~ 136 (445)
.-+|..|+..-. + + ..-.++|.-||++-....|.
T Consensus 21 ~Y~C~~Cg~~~~---l-~-~~~~iRC~~CG~RILyK~Rt 54 (63)
T 3h0g_L 21 IYLCADCGARNT---I-Q-AKEVIRCRECGHRVMYKMRT 54 (63)
T ss_dssp CCBCSSSCCBCC---C-C-SSSCCCCSSSCCCCCBCCCC
T ss_pred EEECCCCCCeee---c-C-CCCceECCCCCcEEEEEecC
Confidence 458999987544 2 2 23468999999997776554
No 95
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=24.32 E-value=3.4e+02 Score=23.35 Aligned_cols=107 Identities=9% Similarity=0.075 Sum_probs=55.9
Q ss_pred HHHHHHHhcCCChHHHHHHhhhcCCChhhHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHhccC-chhHHHHHHHHHHHhc
Q 013311 301 DQMKDFLKKGASASQFKSFLGSLSGTPQEVMDALFVALFDGIEKGFAKEVTKKKNYLAAATQE-EGSQMVLLHSLESFCG 379 (445)
Q Consensus 301 ~~lk~~l~~~~s~~ei~~el~~~~l~~~~v~~vl~eaLf~~i~~~i~k~i~k~~~lL~~~~~~-~~~Q~~lL~alE~~~~ 379 (445)
..|++++.. .+.+++...++.++++ +.-..++..++...+...--........||..++.. --..-++..|+++++.
T Consensus 14 ~lL~EY~~~-~D~~EA~~cl~EL~~p-~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl~ 91 (152)
T 2ion_A 14 MLLKEYLLS-GDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYN 91 (152)
T ss_dssp HHHHHHHHH-CCHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCHHHHHHHHHHhCCC-cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence 344555544 3667777777878765 333333333333222211011122233455554432 1122233344444433
Q ss_pred c------cChhhHHHHHHHHHHHhhCCcchhHHHHH
Q 013311 380 K------ARPAAVKEVALVLKALYDNDLLEEEFILD 409 (445)
Q Consensus 380 ~------~~~~l~~~~~~ILk~LYD~DIleEE~Il~ 409 (445)
. .-|..-..+..++-.....++|.-..+..
T Consensus 92 ~ldDl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~ 127 (152)
T 2ion_A 92 EIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDL 127 (152)
T ss_dssp HHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHT
T ss_pred hChHhccCccchHHHHHHHHHHHHHCCCCCHHHHHh
Confidence 2 14777778888999999999999777765
No 96
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=24.18 E-value=27 Score=35.67 Aligned_cols=33 Identities=24% Similarity=0.692 Sum_probs=22.0
Q ss_pred cccCCCCC-CCceEEEec----CCe--eeeeccccCCccc
Q 013311 99 VQCYGCGN-PETDIIITK----TQM--VNLKCAACGFVSE 131 (445)
Q Consensus 99 VlC~~C~~-peT~l~~~k----~~~--~~~~C~aCG~~~~ 131 (445)
.+||.|+. -.|.+...+ +.+ +...|..||++..
T Consensus 13 s~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~ 52 (404)
T 2qkd_A 13 SLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNT 52 (404)
T ss_dssp EECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCEEE
T ss_pred ccCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCchh
Confidence 58999995 445555422 233 3578999999853
No 97
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=23.48 E-value=48 Score=27.36 Aligned_cols=27 Identities=19% Similarity=0.523 Sum_probs=18.0
Q ss_pred hccccCCCCCCCceEEEecCCeeeeeccccCCc
Q 013311 97 KYVQCYGCGNPETDIIITKTQMVNLKCAACGFV 129 (445)
Q Consensus 97 ~fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~ 129 (445)
+-.+||.|+.+ |.. .++ ...|.+|+..
T Consensus 31 M~~~CP~Cq~e---L~~-~g~--~~hC~~C~~~ 57 (101)
T 2jne_A 31 MELHCPQCQHV---LDQ-DNG--HARCRSCGEF 57 (101)
T ss_dssp CCCBCSSSCSB---EEE-ETT--EEEETTTCCE
T ss_pred ccccCccCCCc---cee-cCC--EEECccccch
Confidence 44899999987 445 344 3357777764
No 98
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=22.76 E-value=44 Score=31.88 Aligned_cols=55 Identities=18% Similarity=0.419 Sum_probs=37.5
Q ss_pred ecCHHHHHHH-HHHHHhhccccCCCCC-CCceEEEecCCeeeeeccccCCcccccchh
Q 013311 81 AHDTAKLAGL-LENFIKKYVQCYGCGN-PETDIIITKTQMVNLKCAACGFVSEVDMRD 136 (445)
Q Consensus 81 ~~~~~~l~~~-l~~fi~~fVlC~~C~~-peT~l~~~k~~~~~~~C~aCG~~~~v~~~~ 136 (445)
-++..++..+ =..++.+...||.|++ |=+.+.- ...+--.-|..|+...-+..+.
T Consensus 16 YkS~SQ~aRVLTE~Wv~~n~yCPnCG~~~l~~f~n-N~PVaDF~C~~C~EeyELKSk~ 72 (257)
T 4esj_A 16 YKSNSQKARILTEDWVYRQSYCPNCGNNPLNHFEN-NRPVADFYCNHCSEEFELKSKK 72 (257)
T ss_dssp TTTCTTHHHHHHHHHHHHHCCCTTTCCSSCEEC-----CCCEEECTTTCCEEEEEEEE
T ss_pred ccChhheehhhhHHHHHHCCcCCCCCChhhhhccC-CCcccccccCCcchhheecccc
Confidence 3444444444 4789999999999999 4445554 4566778999999998887443
No 99
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=22.33 E-value=11 Score=31.15 Aligned_cols=15 Identities=13% Similarity=-0.015 Sum_probs=12.8
Q ss_pred eeeeccccCCccccc
Q 013311 119 VNLKCAACGFVSEVD 133 (445)
Q Consensus 119 ~~~~C~aCG~~~~v~ 133 (445)
-.|.|..||...||.
T Consensus 52 ~~LvC~~c~~~YPI~ 66 (97)
T 2k5r_A 52 EALITRDRKQVFRIE 66 (97)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred CeEEcCCCCCCcccc
Confidence 368899999999985
No 100
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=22.15 E-value=44 Score=24.24 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=25.1
Q ss_pred ccccCCCCCCCceEEEecCCeeeeeccccCCcccccch--hhhhHHHh
Q 013311 98 YVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVDMR--DKLTTFIL 143 (445)
Q Consensus 98 fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~~~--~kl~~~i~ 143 (445)
-..|+.|+.- +..+.-.|..|+-.+.|..+ -.|+.||-
T Consensus 9 ~~~C~~C~Gs--------G~~i~~~C~~C~G~G~v~~~~G~~~~~~~~ 48 (53)
T 3lcz_A 9 ETTCPNCNGS--------GREEPEPCPKCLGKGVILTAQGSTLLHFIK 48 (53)
T ss_dssp EEECTTTTTS--------CEETTEECTTTTTSSEEECHHHHHHHHHHH
T ss_pred eccCcCCccc--------ccCCCCcCCCCCCcEEEEEEeCchHHHHHH
Confidence 3579999753 23344789999999888654 34455553
No 101
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=21.99 E-value=63 Score=25.53 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=26.3
Q ss_pred echHHHHHHhCCCchHHHHHHHHhhcCcc
Q 013311 39 VNMVDIAKALARPPSYTTKYFGNELGAQS 67 (445)
Q Consensus 39 ~N~~~ia~~L~R~p~~~~ky~~~ELg~~~ 67 (445)
.++.+||+.++-++.|+.+.|-..+|..-
T Consensus 19 ~~~~~lA~~~~~s~~~l~r~fk~~~G~s~ 47 (108)
T 3mn2_A 19 ITIEKLTALTGISSRGIFKAFQRSRGYSP 47 (108)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHTSSCH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHhCcCH
Confidence 46899999999999999999999999864
No 102
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=21.76 E-value=3.5e+02 Score=22.49 Aligned_cols=105 Identities=10% Similarity=0.102 Sum_probs=53.9
Q ss_pred HHHHHHHhcCCChHHHHHHhhhcCCChhhHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHhccC-chhHHHHHHHHHHHhc
Q 013311 301 DQMKDFLKKGASASQFKSFLGSLSGTPQEVMDALFVALFDGIEKGFAKEVTKKKNYLAAATQE-EGSQMVLLHSLESFCG 379 (445)
Q Consensus 301 ~~lk~~l~~~~s~~ei~~el~~~~l~~~~v~~vl~eaLf~~i~~~i~k~i~k~~~lL~~~~~~-~~~Q~~lL~alE~~~~ 379 (445)
..|++++.. .+.+++...++.++++ +.-..++..++...+..+--........||..++.+ --..-++..|+++++.
T Consensus 12 ~ll~EY~~~-~D~~Ea~~cl~eL~~p-~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~~ 89 (129)
T 2nsz_A 12 MLLKEYLLS-GDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYN 89 (129)
T ss_dssp HHHHHHHHH-CCHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHh
Confidence 345555554 3567777777777765 332333333333222211101122233455544432 1222234444444443
Q ss_pred c------cChhhHHHHHHHHHHHhhCCcchhHHH
Q 013311 380 K------ARPAAVKEVALVLKALYDNDLLEEEFI 407 (445)
Q Consensus 380 ~------~~~~l~~~~~~ILk~LYD~DIleEE~I 407 (445)
. .-|..-..+..++-.....++|+-.-+
T Consensus 90 ~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~~~~~ 123 (129)
T 2nsz_A 90 EIPDINLDVPHSYSVLERFVEECFQAGIISKQLR 123 (129)
T ss_dssp HHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred hChHhhcCccchHHHHHHHHHHHHHCCCCCHHHH
Confidence 2 147766788888899999999986544
No 103
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=21.70 E-value=65 Score=25.18 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=26.3
Q ss_pred echHHHHHHhCCCchHHHHHHHHhhcCcc
Q 013311 39 VNMVDIAKALARPPSYTTKYFGNELGAQS 67 (445)
Q Consensus 39 ~N~~~ia~~L~R~p~~~~ky~~~ELg~~~ 67 (445)
.++.+||+.++-++.|+.+.|...+|..-
T Consensus 20 ~~~~~lA~~~~~S~~~l~r~fk~~~g~s~ 48 (103)
T 3lsg_A 20 FTLSVLSEKLDLSSGYLSIMFKKNFGIPF 48 (103)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHHHSSCH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHCcCH
Confidence 46889999999999999999999999864
No 104
>2rrh_A VIP peptides; peptide hormone, hormone; NMR {Homo sapiens} PDB: 2rri_A
Probab=21.35 E-value=39 Score=21.66 Aligned_cols=12 Identities=17% Similarity=0.149 Sum_probs=9.6
Q ss_pred HhhhHHHHHhcc
Q 013311 426 KNAKPVIEWLQN 437 (445)
Q Consensus 426 k~a~pFI~WLeE 437 (445)
.+++.||.||..
T Consensus 17 ~~ak~fl~~l~~ 28 (29)
T 2rrh_A 17 MAVKKYLNSILN 28 (29)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 568899999963
No 105
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=21.12 E-value=61 Score=23.64 Aligned_cols=29 Identities=21% Similarity=0.476 Sum_probs=19.0
Q ss_pred ccccCCCCCCCceEEEecCCeeeeeccccCCcc
Q 013311 98 YVQCYGCGNPETDIIITKTQMVNLKCAACGFVS 130 (445)
Q Consensus 98 fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~ 130 (445)
--.||.|++-- .+.. . .-.+.|..||..-
T Consensus 18 ~~fCPkCG~~~-~ma~-~--~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGV-FLAE-H--ADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTTTC-CCEE-C--SSEEECTTTCCCE
T ss_pred cccCcCCCCce-eEec-c--CCEEECCCCCCEE
Confidence 35699999833 2222 1 2367999999874
No 106
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Probab=20.57 E-value=64 Score=26.71 Aligned_cols=36 Identities=22% Similarity=0.558 Sum_probs=24.7
Q ss_pred HHhhccccCCCCCCCceEEEec-----C--C--eeeeeccccCCc
Q 013311 94 FIKKYVQCYGCGNPETDIIITK-----T--Q--MVNLKCAACGFV 129 (445)
Q Consensus 94 fi~~fVlC~~C~~peT~l~~~k-----~--~--~~~~~C~aCG~~ 129 (445)
|+=.|+-|..|+.-+-.++-++ + . ++...|..|++.
T Consensus 22 yl~Nf~gC~~C~~~~~~~v~nk~~~eedgeEiity~H~C~nC~Hv 66 (106)
T 2jox_A 22 FLLNFTGCAVCSKRDFMLITNKSLKEEDGEEIVTYDHLCKNCHHV 66 (106)
T ss_dssp CTTTBCCCSSSCCSSCEEEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred eeeechhhhhcCCCceEEEeccccccCCCcEEEEEEEecCCCceE
Confidence 4556999999999885555432 1 1 345789999874
Done!