BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013315
(445 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
GN=At1g04910 PE=1 SV=1
Length = 519
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 138/420 (32%), Positives = 224/420 (53%), Gaps = 49/420 (11%)
Query: 4 ADQRNWEP-SGGNNGYILVTANGGMNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDV 62
A + +W P + NGY+ V NGG+NQQR AICNAV+ AR++NATLV+P+ +S W D
Sbjct: 76 APRSDWPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAARIMNATLVLPELDANSFWHDD 135
Query: 63 SQFSDIYQEEHFINYLTPDIRMVKELPNKLQSLDLEAIGSVVTDVDIPKESKPSFYLKNI 122
S F IY EHFI L D+++V ++P+ ++ + I + + P+++ +YL
Sbjct: 136 SGFQGIYDVEHFIETLKYDVKIVGKIPDVHKNGKTKKIKAF--QIRPPRDAPIEWYLTTA 193
Query: 123 IPILLRNGVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKH 182
+ + + ++L F +RLA + + QRLRCR N+HAL+F P I + ++ +LR
Sbjct: 194 LKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIMKLSESIVDKLRS- 252
Query: 183 EGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQ 242
+GH +++IHLRFE+DM+A + C EE++
Sbjct: 253 QGH-----------------------------FMSIHLRFEMDMLAFAGCFDIFNPEEQK 283
Query: 243 ELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAG 302
L KYR+ +F K E R+ G CPLTPEE L+L A+ F+ T +++A
Sbjct: 284 ILRKYRKENF--------ADKRLIYNERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAA 335
Query: 303 AQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQL--AALDFIGCTAANAFAM 360
+++GG + + +L+P L +N S E S L +A+D++ C ++ F
Sbjct: 336 GELFGGEQFMKPFRTLFPRL---DNHSSVDPSEELSATSQGLIGSAVDYMVCLLSDIFMP 392
Query: 361 T-DSGSQLSSLVSGYRIYYGGGKMPTIRPNKRRLAAIFVKNSTIEWKVFEQRVRKAVRQT 419
T D S ++ + G+R+YYG TIRP+++ LA IF+ + FE+ VR+ + +T
Sbjct: 393 TYDGPSNFANNLLGHRLYYGFRT--TIRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKT 450
>sp|Q54KU3|PKS25_DICDI Probable polyketide synthase 25 OS=Dictyostelium discoideum
GN=pks25 PE=3 SV=1
Length = 2380
Score = 40.0 bits (92), Expect = 0.041, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 49 VVPKFMYSSVWRDVSQFSDIYQEEHFINYLTPDIRMVKELPNKLQSLDLEAIGSVVTDVD 108
V+P F S+V ++ S I+ E+F + ++ + + + N + ++ IGS + ++
Sbjct: 784 VIPTF--STVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIE 841
Query: 109 IPKESKPSFYLKNIIPI---LLRNG 130
I SFYLK +IP RNG
Sbjct: 842 IAPHPTLSFYLKQMIPKQSQYFRNG 866
>sp|Q54KU5|PKS24_DICDI Probable polyketide synthase 24 OS=Dictyostelium discoideum
GN=pks24 PE=3 SV=1
Length = 2471
Score = 40.0 bits (92), Expect = 0.041, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 49 VVPKFMYSSVWRDVSQFSDIYQEEHFINYLTPDIRMVKELPNKLQSLDLEAIGSVVTDVD 108
V+P F S+V ++ S I+ E+F + ++ + + + N + ++ IGS + ++
Sbjct: 789 VIPTF--STVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIE 846
Query: 109 IPKESKPSFYLKNIIPI---LLRNG 130
I SFYLK +IP RNG
Sbjct: 847 IAPHPTLSFYLKQMIPKQSQYFRNG 871
>sp|A1CQH8|UTP25_ASPCL U3 small nucleolar RNA-associated protein 25 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=utp25 PE=3 SV=1
Length = 693
Score = 38.5 bits (88), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Query: 330 SATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPTIRPN 389
A+ L P KNFSS G A AM+D QL+ + GY+ G + +
Sbjct: 181 DASLLPPLKNFSSVKLKKKLDGPAADLIPAMSDDAQQLAPYIFGYQDVLHGARNTSNSAT 240
Query: 390 KRRLAAIFVKNSTIEW--KVFEQRVRKAVRQTKHIQSRSKG----RSVYRYPRCKECMCP 443
R L AI N ++ +V + R A Q + R +G + +Y P + C+
Sbjct: 241 LRDLLAIHATNHVLKTRDRVLKNNARVAKEQDADLDLRDQGFTRPKVLYLLPTRQACVRV 300
Query: 444 TD 445
D
Sbjct: 301 VD 302
>sp|Q53005|4HBCL_RHOPA 4-hydroxybenzoate--CoA/benzoate--CoA ligase OS=Rhodopseudomonas
palustris (strain ATCC BAA-98 / CGA009) GN=hbaA PE=1
SV=1
Length = 539
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 100 IGSVVTDVDIPKESKPSFYLKNII--PIL----LRNGVVHLLGFGNRLAFDPIPFQLQRL 153
+G ++ + + +E++ + LK+ + PIL +R G+V +L RL D + L+
Sbjct: 46 VGPMLARLGVEQENRIALVLKDTVDFPILFWGAIRAGIVPVL-LNTRLTADQYRYLLEDS 104
Query: 154 RCRCNFHALQFAPKIQETGALL 175
R R F + +F P I+E A L
Sbjct: 105 RSRVVFASSEFLPVIEEAAADL 126
>sp|Q6CQX4|NTF2_KLULA Nuclear transport factor 2 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=NTF2 PE=3 SV=1
Length = 125
Score = 33.1 bits (74), Expect = 4.6, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 31/57 (54%)
Query: 52 KFMYSSVWRDVSQFSDIYQEEHFINYLTPDIRMVKELPNKLQSLDLEAIGSVVTDVD 108
+F Y+ D +Q ++Y+E+ + + T ++ K++ KL SL + + +T +D
Sbjct: 14 EFYYNQFDSDRTQLGNLYREQSMLTFETTQLQGAKDIVEKLVSLPFQKVAHRITTLD 70
>sp|B6JN00|YBEY_HELP2 Endoribonuclease YbeY OS=Helicobacter pylori (strain P12) GN=ybeY
PE=3 SV=1
Length = 140
Score = 32.0 bits (71), Expect = 9.8, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Query: 94 SLDLEAI-----GSVVTDVDIPKES--KPSFYLKNIIPILLRNGVVHLLGF 137
S LEAI GSVV +V + +E+ K L+N I +L +GV+HLLG+
Sbjct: 58 SFPLEAIPHTPLGSVVINVPLAQENALKLGHSLENEIALLFIHGVLHLLGY 108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,019,374
Number of Sequences: 539616
Number of extensions: 6756119
Number of successful extensions: 14487
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 14476
Number of HSP's gapped (non-prelim): 16
length of query: 445
length of database: 191,569,459
effective HSP length: 121
effective length of query: 324
effective length of database: 126,275,923
effective search space: 40913399052
effective search space used: 40913399052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)