Query 013315
Match_columns 445
No_of_seqs 165 out of 382
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 08:16:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013315.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013315hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.6 2.1E-14 7.3E-19 146.7 14.2 302 12-381 18-382 (408)
2 3zy2_A Putative GDP-fucose pro 99.2 1.1E-10 3.8E-15 118.0 15.4 281 14-383 6-352 (362)
3 2hhc_A NODZ, nodulation fucosy 97.0 0.017 6E-07 56.6 16.0 52 15-69 3-54 (330)
4 2de0_X Alpha-(1,6)-fucosyltran 96.9 0.078 2.7E-06 56.4 20.4 253 15-377 144-419 (526)
5 1l2m_A REP protein; A+B fold, 28.8 56 0.0019 28.1 4.3 28 275-303 17-44 (118)
6 3l32_A Phosphoprotein; antipar 24.5 32 0.0011 24.9 1.6 21 161-181 2-22 (45)
7 2g7j_A Putative cytoplasmic pr 19.9 40 0.0014 28.9 1.5 27 277-307 2-28 (124)
8 1h8b_A ACT-EF34, alpha-actinin 18.9 1.3E+02 0.0045 23.1 4.3 29 261-293 21-51 (75)
9 1p3q_Q VPS9P, vacuolar protein 18.1 33 0.0011 25.8 0.6 14 310-323 14-27 (54)
10 2eqr_A N-COR1, N-COR, nuclear 17.6 61 0.0021 24.0 2.0 19 273-291 10-28 (61)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.56 E-value=2.1e-14 Score=146.73 Aligned_cols=302 Identities=20% Similarity=0.194 Sum_probs=164.7
Q ss_pred CCCCCceEEEEe-cC-chhhHHHHHHHHHHHHHHhcCe----EEecccccCCcccCCC------CCCcccchHHHHHhcc
Q 013315 12 SGGNNGYILVTA-NG-GMNQQRVAICNAVVLARLLNAT----LVVPKFMYSSVWRDVS------QFSDIYQEEHFINYLT 79 (445)
Q Consensus 12 ~~~snGyl~V~~-nG-GLnq~R~~IcdaVavArlLNAT----LViP~l~~~s~w~D~S------~F~dIfD~dhFi~~L~ 79 (445)
....++||+-.. .| |.|.||...-.|.++|+.||.| ||||-...-.-|+-.+ .|++.||++++ +
T Consensus 18 ~~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~ 93 (408)
T 4ap5_A 18 AASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----N 93 (408)
T ss_dssp --CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----H
T ss_pred CccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----H
Confidence 356789999875 45 8999999999999999999999 9999765333455432 69999999875 3
Q ss_pred CCceecccCchhhhhhh-hhhhc-----------------------ccc------cccCCCCCCChhHHH----------
Q 013315 80 PDIRMVKELPNKLQSLD-LEAIG-----------------------SVV------TDVDIPKESKPSFYL---------- 119 (445)
Q Consensus 80 ~dVrIVk~LP~~~~~~~-~~~~~-----------------------~~~------~~~~~~~~s~~~~Y~---------- 119 (445)
..|+|+.. +++.... +..+. ..+ ..........+.|=.
T Consensus 94 ~~vpVI~m--eeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c 171 (408)
T 4ap5_A 94 KNIPVIEY--EQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSC 171 (408)
T ss_dssp TTSCEEEH--HHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEE
T ss_pred hhCCeeEH--HHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCcee
Confidence 45566522 1211000 00000 000 000000001111100
Q ss_pred -------hhhhhhhhhc---ceEEEcccCCCCCCCCCchhhhhhhccccccccccchhHHHHHHHHHHHHhcccCCCCCC
Q 013315 120 -------KNIIPILLRN---GVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPL 189 (445)
Q Consensus 120 -------~~ilP~l~k~---~Vi~l~~~~~rLa~~~lP~~iQrLRCrvnf~ALrF~~~I~~lg~~lV~Rlr~~~~~~~~~ 189 (445)
..+-|.+.+. .-+-+..+...|+.-....+...+| ..|+|.+.|.+.|++.++..-.......++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L~~~~~~~h~ 246 (408)
T 4ap5_A 172 LSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHLNSTDDADRI 246 (408)
T ss_dssp EEECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHHCCCTTTTTC
T ss_pred EEEeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHhCcccceeec
Confidence 1122333322 1222333333343211223333332 479999999999999888654321000000
Q ss_pred ccccCCCccchhhhh-hhccccCCCceEEEeeeehhhhhhhccccCCCChhHHHHHHHHHHhhhhhhhhhhcCCCCCChH
Q 013315 190 DHYLVGPYADSIMKE-KRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPA 268 (445)
Q Consensus 190 ~~~~~g~~~~~~~~~-~~~~~~~~~~fvAlHLR~E~DmlA~sgC~~g~~~~e~~eL~~~R~~~~~~~~~~~~~~k~i~~~ 268 (445)
- .| . .-... .......+++|+|+|+|-+.=+.++..|... ....
T Consensus 247 r---~~--~-dw~~~~~~~~~~~~~~y~~~H~Rr~d~~~~~~~~~ps----~~~~------------------------- 291 (408)
T 4ap5_A 247 P---FQ--E-DWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVPS----LEGA------------------------- 291 (408)
T ss_dssp C---CC--S-SGGGCCCCTTCBCCEEEEEEEECCTTTTTTTCSSSCC----HHHH-------------------------
T ss_pred c---cc--h-hHhhhhcccccccCCCccccccccccchhhhhccCCC----HHHH-------------------------
Confidence 0 00 0 00000 0011223579999999987322232223211 0111
Q ss_pred hhhcCCCCcCCHHHHHHHHHHcCCCCCcEEEEEeccccCccccchHHHhhCCCccccccCCCccccccccccccccchhh
Q 013315 269 EIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALD 348 (445)
Q Consensus 269 ~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L~s~eEL~pf~~~ss~lAALD 348 (445)
.+.+.-+++..+ -+.||||+-+. +..+..|++.+|.++.-.. ..+++..+ ...++|.||
T Consensus 292 -----------~~~i~~~~~~~~---~~~VyiATD~~---~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~id 350 (408)
T 4ap5_A 292 -----------VRKIRSLMKTHR---LDKVFVATDAV---RKEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAIID 350 (408)
T ss_dssp -----------HHHHHHHHHHHT---CSCEEEEECCC---HHHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHHHH
T ss_pred -----------HHHHHHHHHhcC---CCEEEEeCCCc---hhHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhHHH
Confidence 122223333433 34599998643 3446789999987764322 22444444 334579999
Q ss_pred heeeccCceeeeCCCCCchhHhhhhchhcccCC
Q 013315 349 FIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGG 381 (445)
Q Consensus 349 y~Vcl~SDvFv~t~~G~n~a~~V~GhR~y~g~g 381 (445)
-+||.+||+||+|..+ +|+..|.=.|-+.|..
T Consensus 351 q~Ic~~a~~FiGt~~S-tfS~~I~~eR~~~G~~ 382 (408)
T 4ap5_A 351 QWICAHARFFIGTSVS-TFSFRIHEEREILGLD 382 (408)
T ss_dssp HHHHHTEEEEEBCTTC-HHHHHHHHHHHHHTBC
T ss_pred HHHHHhCCeeEeCCcC-chhHHHHHHHHhcCCC
Confidence 9999999999999865 7999999999999843
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.23 E-value=1.1e-10 Score=117.99 Aligned_cols=281 Identities=18% Similarity=0.227 Sum_probs=161.9
Q ss_pred CCCceEEE-EecCchhhHHHHHHHHHHHHHHhcCeEEecccccCCcccCCC---CCCcccchHHHHHhccCCceeccc--
Q 013315 14 GNNGYILV-TANGGMNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDVS---QFSDIYQEEHFINYLTPDIRMVKE-- 87 (445)
Q Consensus 14 ~snGyl~V-~~nGGLnq~R~~IcdaVavArlLNATLViP~l~~~s~w~D~S---~F~dIfD~dhFi~~L~~dVrIVk~-- 87 (445)
.+||||+- .|-|-+.+|-...--+.+.|+.||.|||||-+-.-.. ..+ .|++.|+++. |+..-|||.-
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~--~~~~~vpf~~yF~v~~----l~~yhrvi~me~ 79 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH--PETKMIPFEFLFQVGT----VAKYTRVVTMQE 79 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS--SSCEEECHHHHBCHHH----HTTTSCEECHHH
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC--Ccccccchhheeecch----hhhhceeeeHHH
Confidence 47999998 6999999999999999999999999999987642222 114 5888888865 3334444421
Q ss_pred ----C-----chhhh----hhhhhh-----hcccccc------------cCCCCCCChhHH--------------H----
Q 013315 88 ----L-----PNKLQ----SLDLEA-----IGSVVTD------------VDIPKESKPSFY--------------L---- 119 (445)
Q Consensus 88 ----L-----P~~~~----~~~~~~-----~~~~~~~------------~~~~~~s~~~~Y--------------~---- 119 (445)
| |++-. ...+.. -++.++. +.| ...+-.+| .
T Consensus 80 Fm~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v-~F~~se~~~~~~~~l~~~~~~~~~~W~ 158 (362)
T 3zy2_A 80 FTKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDV-SFVGDEYFGDIPGGFDLNQMGSRKKWL 158 (362)
T ss_dssp HHHHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTC-CCCEEEECTTSTTTTCC-------CHH
T ss_pred HHHHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhcccc-ccccceeccCccccccccchhHHHHHH
Confidence 1 11100 000000 0000110 000 00000011 1
Q ss_pred hhhhhhhhhcceEEEcccCCCCCCCCCc--hhhhhhhccccccccccchhHHHHHHHHHHHHhcccCCCCCCccccCCCc
Q 013315 120 KNIIPILLRNGVVHLLGFGNRLAFDPIP--FQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPY 197 (445)
Q Consensus 120 ~~ilP~l~k~~Vi~l~~~~~rLa~~~lP--~~iQrLRCrvnf~ALrF~~~I~~lg~~lV~Rlr~~~~~~~~~~~~~~g~~ 197 (445)
+..-| .+|-|+.|++.-. ++...+ -.||| -|+++++|.+.|++.|+.--.
T Consensus 159 ~~~p~--~~~pVlAf~gaPa--~FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L~---------------- 210 (362)
T 3zy2_A 159 EKFPS--EEYPVLAFSSAPA--PFPSKGKVWSIQK--------YLRWSSRITEQAKKFISANLA---------------- 210 (362)
T ss_dssp HHSCT--TTCSEEEESSCSS--CSSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHCC----------------
T ss_pred HhCCc--ccCceEeecCCCC--CCCcChhhHhHHH--------hccccHHHHHHHHHHHHHhcC----------------
Confidence 11111 2578888876321 122122 23444 689999999999998877433
Q ss_pred cchhhhhhhccccCCCceEEEeeeehhhhhhhccccCC-CC-----hhHHHHHHHHHHhhhhhhhhhhcCCCCCChHhhh
Q 013315 198 ADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEFG-GG-----EEERQELEKYREIHFPALAHLKKTTKLPSPAEIR 271 (445)
Q Consensus 198 ~~~~~~~~~~~~~~~~~fvAlHLR~E~DmlA~sgC~~g-~~-----~~e~~eL~~~R~~~~~~~~~~~~~~k~i~~~~~R 271 (445)
++|||+|||-=.||.-. |.+- .+ -+.-.-+ .|. . .++ .+.
T Consensus 211 ---------------rpyVgIHLR~G~DW~~a--C~hlk~~~~~~lfaSPQC~------Gy~---~--~~~-~lt----- 256 (362)
T 3zy2_A 211 ---------------KPFVAVHLRNDADWVRV--CEHIDTTTNRPLFASEQCL------GEG---H--HLG-TLT----- 256 (362)
T ss_dssp ---------------SSEEEEEECCCHHHHHH--HHTCCTTTCCCCTTTHHHH------CGG---G--TTC-CCC-----
T ss_pred ---------------CCeEEEEEecCCcHHHH--HhhhccccCcccccCCccc------CCc---c--cCc-ccc-----
Confidence 38999999999999876 8752 11 0000000 010 0 000 000
Q ss_pred cCCCCcCCHHH----HHHHHHHcCCCCCcEEEEEeccccCccccchHHHhhCCCccccccCCCccccccccccccccchh
Q 013315 272 SEGLCPLTPEE----AVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAAL 347 (445)
Q Consensus 272 ~~G~CPLtPeE----vgl~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L~s~eEL~pf~~~ss~lAAL 347 (445)
...|==+.++ +..+++.++.+ .||||+-.. ..+.-|+++|+....+ +.+ +. ...|+|
T Consensus 257 -~emClPSle~I~rqIk~~vk~~~lk---sVFIATDa~----~~~~ELk~~L~~~~v~--vv~------~~---pe~a~I 317 (362)
T 3zy2_A 257 -KEICSPSKQQILEQIVEKVGSIGAK---SVFVASDKD----HMIDEINEALKPYEIE--AHR------QE---PDDMYT 317 (362)
T ss_dssp -HHHHSCCHHHHHHHHHHHHHHHTCS---EEEEEESSC----CCHHHHHHHHGGGTCC--EEC------CS---SCCHHH
T ss_pred -hhccCCCHHHHHHHHHHHHHhcCCc---EEEEecCCH----HHHHHHHHHhhccCce--EEE------eC---CchhHH
Confidence 0134223333 44556666644 599999643 3577888888642111 111 10 117999
Q ss_pred hheeeccCceeeeCCCCCchhHhhhhchhcccCCCC
Q 013315 348 DFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKM 383 (445)
Q Consensus 348 Dy~Vcl~SDvFv~t~~G~n~a~~V~GhR~y~g~g~~ 383 (445)
|.+||.+||+||+|..+ +|+..|.=.|--.|..++
T Consensus 318 D~~I~~~A~~FIGN~~S-SFSa~I~rERdi~G~~~~ 352 (362)
T 3zy2_A 318 SLAIMGRADLFVGNCVS-TFSHIVKRERDHAGQSPR 352 (362)
T ss_dssp HHHHHHHSSEEEECTTC-HHHHHHHHHHHHSSSSCC
T ss_pred HHHHHHhCCEeecCccc-cccHHHHHHHHhcCCCCC
Confidence 99999999999999855 799999999998874333
No 3
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.01 E-value=0.017 Score=56.59 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=41.3
Q ss_pred CCceEEEEecCchhhHHHHHHHHHHHHHHhcCeEEecccccCCcccCCCCCCccc
Q 013315 15 NNGYILVTANGGMNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDVSQFSDIY 69 (445)
Q Consensus 15 snGyl~V~~nGGLnq~R~~IcdaVavArlLNATLViP~l~~~s~w~D~S~F~dIf 69 (445)
+..||++...|||.+|=-+++.|.++|...|.+|+|--.. ..|-. ..|.+.|
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~~--~~~~~~f 54 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYVE--QPFSNAF 54 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTCS--STTSBSH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccCC--CCccccC
Confidence 4679999999999999999999999999999998886543 33322 3466666
No 4
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=96.85 E-value=0.078 Score=56.36 Aligned_cols=253 Identities=15% Similarity=0.106 Sum_probs=135.5
Q ss_pred CCceEEEEe--cCchhhHHHHHHHHHHHHHHhcCeEEecccccCCcccCC-CCCCcccchHHHHHhccCCceecccCchh
Q 013315 15 NNGYILVTA--NGGMNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDV-SQFSDIYQEEHFINYLTPDIRMVKELPNK 91 (445)
Q Consensus 15 snGyl~V~~--nGGLnq~R~~IcdaVavArlLNATLViP~l~~~s~w~D~-S~F~dIfD~dhFi~~L~~dVrIVk~LP~~ 91 (445)
+..||+... ..|+.-+-..++=+..+|-.+|.||||-.=. |.-. ..|+++|+. +...+... |.
T Consensus 144 ~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P--~s~~C~~~-------~~- 209 (526)
T 2de0_X 144 KAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP--VSETCTDR-------SG- 209 (526)
T ss_dssp GSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC--SCSSCCCC-------CC-
T ss_pred CCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC--cCccccCC-------Cc-
Confidence 458999986 5799999999999999999999999994422 3322 467888854 11111110 00
Q ss_pred hhhhhhhhhcccccccCCCCCCChhHHHhhhhhhhhhcceEEEcccCC--C---CCCCCCchhh----hhhhc-------
Q 013315 92 LQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGN--R---LAFDPIPFQL----QRLRC------- 155 (445)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~s~~~~Y~~~ilP~l~k~~Vi~l~~~~~--r---La~~~lP~~i----QrLRC------- 155 (445)
.....|..... -..+.||.+...++ + ...-.+|.++ ++|.-
T Consensus 210 ---------------~~~~~w~~~~~--------~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~ 266 (526)
T 2de0_X 210 ---------------ISTGHWSGEVK--------DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWV 266 (526)
T ss_dssp ---------------SCCCBCCCTTG--------GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHH
T ss_pred ---------------cccCCCCCccc--------CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHH
Confidence 00112322110 12455555433221 1 1111345442 33321
Q ss_pred cccc-cccccchhHHHHHHHHHHHHhcccCCCCCCccccCCCccchhhhhhhccccCCCceEEEeeeehhhhhhhccccC
Q 013315 156 RCNF-HALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEF 234 (445)
Q Consensus 156 rvnf-~ALrF~~~I~~lg~~lV~Rlr~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~fvAlHLR~E~DmlA~sgC~~ 234 (445)
...+ .-+|+.++|++.-+.+.+.+.- +++.|+||.|-= |-++. ..
T Consensus 267 ~q~~~yl~rP~~~i~~~I~~~~~~l~~------------------------------~~piVGVHIRrG-Dk~~~---E~ 312 (526)
T 2de0_X 267 SQFVKYLIRPQPWLEKEIEEATKKLGF------------------------------KHPVIGVHVRRT-DKVGT---EA 312 (526)
T ss_dssp HHHHHHHTCBCHHHHHHHHHHHHHHTC------------------------------CSSEEEEEECCC---------CC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCC------------------------------CCCEEEEEEeCC-CCCcc---cc
Confidence 0011 1378899998887777666532 258999999964 33321 10
Q ss_pred CCChhHHHHHHHHHHhhhhhhhhhhcCCCCCChHhhhcCCCCcCCHHHHHHHHHHcCCCCCcEEEEEeccccCccccchH
Q 013315 235 GGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGA 314 (445)
Q Consensus 235 g~~~~e~~eL~~~R~~~~~~~~~~~~~~k~i~~~~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~geiyGg~~~l~~ 314 (445)
...+- .+-+.... .| + -.|+....+..+.||||+-+. ..++-
T Consensus 313 ~~~~~-~~Y~~~v~--~~--~-----------------------------~~l~~~~~~~~~~ifLATDDp----~v~~e 354 (526)
T 2de0_X 313 AFHPI-EEYMVHVE--EH--F-----------------------------QLLARRMQVDKKRVYLATDDP----SLLKE 354 (526)
T ss_dssp CSCSH-HHHHHHHH--HH--H-----------------------------HHHHTTSCCSSCEEEEEESCH----HHHHH
T ss_pred ccCCH-HHHHHHHH--HH--H-----------------------------HHHHhhcCCCCCeEEEEcCCH----HHHHH
Confidence 11110 01111111 01 0 012222467789999999875 45677
Q ss_pred HHhhCCCc--cccccCCCccccc-cccccccccchhhheeeccCceeeeCCCCCchhHhhhhchhc
Q 013315 315 LNSLYPYL--VTKENLLSATELE-PFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIY 377 (445)
Q Consensus 315 L~~~FPnl--~tKe~L~s~eEL~-pf~~~ss~lAALDy~Vcl~SDvFv~t~~G~n~a~~V~GhR~y 377 (445)
+++.||+. ++.........+. .+...+-.-+.+|.++.++||+||+|.++ |++.++...+.-
T Consensus 355 ~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~cd~~Vgt~sS-~~srla~~l~~~ 419 (526)
T 2de0_X 355 AKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLVCTFSS-QVCRVAYEIMQT 419 (526)
T ss_dssp HHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHHSSEEEECTTS-HHHHHHHHHHTT
T ss_pred HHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHhcCCeeecCCCC-HHHHHHHHHhcC
Confidence 88889985 3322221111110 11001113578999999999999998755 788887665543
No 5
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=28.83 E-value=56 Score=28.09 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=22.1
Q ss_pred CCcCCHHHHHHHHHHcCCCCCcEEEEEec
Q 013315 275 LCPLTPEEAVLMLAALGFNRKTHVFVAGA 303 (445)
Q Consensus 275 ~CPLtPeEvgl~L~alGf~~~T~IYlA~g 303 (445)
.||||+||+...|+.|--+.+ ..||...
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~i~ 44 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIKIC 44 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeeeeh
Confidence 799999999999999985543 5566554
No 6
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=24.51 E-value=32 Score=24.90 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=18.4
Q ss_pred ccccchhHHHHHHHHHHHHhc
Q 013315 161 ALQFAPKIQETGALLLRRLRK 181 (445)
Q Consensus 161 ALrF~~~I~~lg~~lV~Rlr~ 181 (445)
++-|+.-+.++|.++|+||++
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKt 22 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRS 22 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHHHHc
Confidence 455778899999999999998
No 7
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=19.94 E-value=40 Score=28.94 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=20.7
Q ss_pred cCCHHHHHHHHHHcCCCCCcEEEEEeccccC
Q 013315 277 PLTPEEAVLMLAALGFNRKTHVFVAGAQIYG 307 (445)
Q Consensus 277 PLtPeEvgl~L~alGf~~~T~IYlA~geiyG 307 (445)
.|-|.||+.+|...||..+.. +-+.||
T Consensus 2 YLRPDEVArVLEk~GF~~D~v----t~kaYG 28 (124)
T 2g7j_A 2 YLRPDEVARVLEKAGFTVDVV----TNKTYG 28 (124)
T ss_dssp CCCHHHHHHHHHHTTCEEEEE----ETTEEE
T ss_pred CcChHHHHHHHHHcCceEEEe----eccccc
Confidence 378999999999999987642 344555
No 8
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=18.89 E-value=1.3e+02 Score=23.11 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=24.1
Q ss_pred CCC-CCChHhhhcCCCCcCCHHHHHHHHHHcC-CC
Q 013315 261 TTK-LPSPAEIRSEGLCPLTPEEAVLMLAALG-FN 293 (445)
Q Consensus 261 ~~k-~i~~~~~R~~G~CPLtPeEvgl~L~alG-f~ 293 (445)
.++ .|+.++.|. .||++|+.-|++.+- .+
T Consensus 21 dg~G~It~~eLr~----~lt~eevd~~i~~~d~~d 51 (75)
T 1h8b_A 21 SDKPYILAEELRR----ELPPDQAQYCIKRMPAYS 51 (75)
T ss_dssp TSCSSBCHHHHHH----HSCHHHHHHHHHHSCSCC
T ss_pred cCCCCcCHHHHHh----cCCHHHHHHHHHhcCccc
Confidence 444 589988887 599999999999987 55
No 9
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=18.14 E-value=33 Score=25.77 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=11.2
Q ss_pred ccchHHHhhCCCcc
Q 013315 310 RRLGALNSLYPYLV 323 (445)
Q Consensus 310 ~~l~~L~~~FPnl~ 323 (445)
..+..|++|||++-
T Consensus 14 ~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHSTTSC
T ss_pred HHHHHHHHHcccCC
Confidence 34778999999984
No 10
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=17.55 E-value=61 Score=24.03 Aligned_cols=19 Identities=11% Similarity=-0.039 Sum_probs=16.8
Q ss_pred CCCCcCCHHHHHHHHHHcC
Q 013315 273 EGLCPLTPEEAVLMLAALG 291 (445)
Q Consensus 273 ~G~CPLtPeEvgl~L~alG 291 (445)
....|.||+|..+|++++-
T Consensus 10 ~~~~~WT~eE~~~F~~~~~ 28 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFI 28 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHH
Confidence 5678999999999999983
Done!