Query 013315
Match_columns 445
No_of_seqs 165 out of 382
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 08:16:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013315.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013315hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ihoa2 d.3.1.18 (A:156-293) A 40.2 1.6 0.00012 36.0 -1.5 35 48-82 32-71 (138)
2 d1l5ia_ d.89.1.4 (A:) DNA-bind 37.4 15 0.0011 29.6 4.2 28 275-303 17-44 (118)
3 d1oqya2 a.5.2.1 (A:317-360) DN 26.6 4.1 0.0003 27.8 -1.0 25 279-303 1-29 (44)
4 d2g7ja1 d.198.5.1 (A:1-112) Pu 20.0 21 0.0015 28.2 1.8 18 278-295 3-20 (112)
5 d1tiza_ a.39.1.5 (A:) Calmodul 18.7 23 0.0017 24.4 1.7 27 389-415 35-66 (67)
6 d1wgla_ a.5.2.4 (A:) Toll-inte 17.6 16 0.0012 26.2 0.5 47 309-360 10-56 (59)
7 d1jjcb2 a.6.1.1 (B:400-474) Do 17.4 35 0.0026 24.7 2.6 24 270-294 13-36 (75)
8 d1vjna_ d.157.1.4 (A:) Hypothe 17.3 71 0.0052 26.7 5.0 42 33-80 142-184 (209)
9 d1sfsa_ c.1.8.8 (A:) Unnamed h 15.9 32 0.0023 30.3 2.3 22 283-304 81-102 (213)
10 d1mn3a_ a.5.2.4 (A:) Vacuolar 15.8 19 0.0014 25.3 0.5 14 310-323 14-27 (54)
No 1
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=40.20 E-value=1.6 Score=36.00 Aligned_cols=35 Identities=23% Similarity=0.580 Sum_probs=29.6
Q ss_pred EEecccccCCcccCCC-----CCCcccchHHHHHhccCCc
Q 013315 48 LVVPKFMYSSVWRDVS-----QFSDIYQEEHFINYLTPDI 82 (445)
Q Consensus 48 LViP~l~~~s~w~D~S-----~F~dIfD~dhFi~~L~~dV 82 (445)
||||....++.|+++- .=+.|||-|.|--..|.-|
T Consensus 32 LVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 32 LVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp ECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHHH
Confidence 8999999999999982 4578999999988776553
No 2
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=37.37 E-value=15 Score=29.61 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=22.2
Q ss_pred CCcCCHHHHHHHHHHcCCCCCcEEEEEec
Q 013315 275 LCPLTPEEAVLMLAALGFNRKTHVFVAGA 303 (445)
Q Consensus 275 ~CPLtPeEvgl~L~alGf~~~T~IYlA~g 303 (445)
+|||||||+...|+.|=-+.+. .||..+
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~ 44 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKIC 44 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEc
Confidence 7999999999999999765554 566644
No 3
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.60 E-value=4.1 Score=27.82 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=17.4
Q ss_pred CHHHHH--HHHHHcCCCCCcE--EEEEec
Q 013315 279 TPEEAV--LMLAALGFNRKTH--VFVAGA 303 (445)
Q Consensus 279 tPeEvg--l~L~alGf~~~T~--IYlA~g 303 (445)
||+|.. -=|.+|||+++.. +|+|-.
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACd 29 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACE 29 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 566644 4589999999864 566654
No 4
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=20.02 E-value=21 Score=28.18 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHcCCCCC
Q 013315 278 LTPEEAVLMLAALGFNRK 295 (445)
Q Consensus 278 LtPeEvgl~L~alGf~~~ 295 (445)
|-|.||+.+|...||..+
T Consensus 3 LRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 789999999999999775
No 5
>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=18.68 E-value=23 Score=24.39 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=18.2
Q ss_pred chHHHHHHH---h--cCCCcchHHHHHHHHHH
Q 013315 389 NKRRLAAIF---V--KNSTIEWKVFEQRVRKA 415 (445)
Q Consensus 389 dr~~l~~lf---~--~~~~~~w~~f~~~v~~~ 415 (445)
....+-.+| | .++.|+|.||...++++
T Consensus 35 ~~~~i~~~~~~~D~d~dg~I~~~EF~~~m~~~ 66 (67)
T d1tiza_ 35 TQEDIVKFFEEIDVDGNGELNADEFTSCIEKM 66 (67)
T ss_dssp CHHHHHHHHHHHCCSSSSEECHHHHHHHHHTC
T ss_pred chHHHHHHHHHhCCCCCCeEeHHHHHHHHHHh
Confidence 344444444 4 36789999999888754
No 6
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.62 E-value=16 Score=26.15 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=29.4
Q ss_pred cccchHHHhhCCCccccccCCCccccccccccccccchhhheeeccCceeee
Q 013315 309 TRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAM 360 (445)
Q Consensus 309 ~~~l~~L~~~FPnl~tKe~L~s~eEL~pf~~~ss~lAALDy~Vcl~SDvFv~ 360 (445)
+..+..|++|||++... .+- .-|. .+..+.-+|+|=..-+.-+.|-|
T Consensus 10 Ee~i~~LkeMFP~~D~~-vI~--~VL~--a~~G~vd~aid~LL~Msd~~~gp 56 (59)
T d1wgla_ 10 EEDLKAIQDMFPNMDQE-VIR--SVLE--AQRGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp HHHHHHHHHHCSSSCHH-HHH--HHHT--TTTTCHHHHHHHHHHSSCCCCSC
T ss_pred HHHHHHHHHHCCCCCHH-HHH--HHHH--HcCCCHHHHHHHHHhcCCCCcCC
Confidence 56689999999998532 111 1111 23455667888777776666644
No 7
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=17.40 E-value=35 Score=24.68 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=19.8
Q ss_pred hhcCCCCcCCHHHHHHHHHHcCCCC
Q 013315 270 IRSEGLCPLTPEEAVLMLAALGFNR 294 (445)
Q Consensus 270 ~R~~G~CPLtPeEvgl~L~alGf~~ 294 (445)
.+..|.. ++++|+..+|+.|||.-
T Consensus 13 ~~~lG~~-i~~~~i~~~L~~Lg~~~ 36 (75)
T d1jjcb2 13 NRLLGTS-YPEAEQIAILKRLGCRV 36 (75)
T ss_dssp HHHHTCC-CCHHHHHHHHHHTTCEE
T ss_pred HHHhCCC-CCHHHHHHHHHHcCCce
Confidence 3556666 99999999999999963
No 8
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=17.26 E-value=71 Score=26.72 Aligned_cols=42 Identities=21% Similarity=0.463 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCeEEecccccCCcccC-CCCCCcccchHHHHHhccC
Q 013315 33 AICNAVVLARLLNATLVVPKFMYSSVWRD-VSQFSDIYQEEHFINYLTP 80 (445)
Q Consensus 33 ~IcdaVavArlLNATLViP~l~~~s~w~D-~S~F~dIfD~dhFi~~L~~ 80 (445)
.--+|+-+|+.|++-.|||-= |+. ...| ++=..|.|++.++.
T Consensus 142 ~~~ea~~~~~~l~pk~viP~H-----~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 142 GPKEAKEVADLLNAKVIIPMH-----YKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp CHHHHHHHHHHTTCSEEEEES-----CCCSSCCT-TCCCTHHHHTTSSC
T ss_pred CHHHHHHHHHHhCCCEEEEec-----cCCccccc-CcCCHHHHHHHhhh
Confidence 346889999999999999962 322 2222 34557888887764
No 9
>d1sfsa_ c.1.8.8 (A:) Unnamed hypothetical protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=15.89 E-value=32 Score=30.26 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=18.0
Q ss_pred HHHHHHHcCCCCCcEEEEEecc
Q 013315 283 AVLMLAALGFNRKTHVFVAGAQ 304 (445)
Q Consensus 283 vgl~L~alGf~~~T~IYlA~ge 304 (445)
+.-.-++||||+.|.||++-=.
T Consensus 81 A~~~A~~lGfp~gt~Iy~dve~ 102 (213)
T d1sfsa_ 81 AVFHARRLGIPKNKLLFANIED 102 (213)
T ss_dssp HHHHHHHTTCCSSCEEEEECCT
T ss_pred HHHHHHHcCCCCCCEEEEEecc
Confidence 4456788999999999999754
No 10
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.78 E-value=19 Score=25.29 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=11.5
Q ss_pred ccchHHHhhCCCcc
Q 013315 310 RRLGALNSLYPYLV 323 (445)
Q Consensus 310 ~~l~~L~~~FPnl~ 323 (445)
..++.|++|||++-
T Consensus 14 e~~~~Lk~MFP~~D 27 (54)
T d1mn3a_ 14 DTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHCTTSC
T ss_pred HHHHHHHHHCCCCC
Confidence 45788999999874
Done!