BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013316
(445 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 131/215 (60%), Gaps = 12/215 (5%)
Query: 149 RALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP- 207
RA S K ++EL+ EL +GL +K ++R+ A +L++ R+ LGL A P
Sbjct: 7 RAEYEGSGAKEVLEELDREL---IGLKPVKDRIRETAALLLVERARQKLGL---AHETPT 60
Query: 208 -HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 266
HM+F GNPGTGKT VA + LL+ +G + + V R DLVG+++GHT PKT+ +K
Sbjct: 61 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLK 120
Query: 267 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVI 324
A GG+LF+DEAY L + +++DYG EA+E ++ VM+ + +VVI AGY++ M+
Sbjct: 121 RAMGGVLFIDEAYYL--YRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFF 178
Query: 325 ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 359
SN GF R+ F D++ EEL +I +++Q
Sbjct: 179 QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ 213
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 131/215 (60%), Gaps = 12/215 (5%)
Query: 149 RALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP- 207
RA S K ++EL+ EL +GL +K ++R+ A +L++ R+ LGL A P
Sbjct: 14 RAEYEGSGAKEVLEELDREL---IGLKPVKDRIRETAALLLVERARQKLGL---AHETPT 67
Query: 208 -HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 266
HM+F GNPGTGKT VA + LL+ +G + + V R DLVG+++GHT PKT+ +K
Sbjct: 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLK 127
Query: 267 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVI 324
A GG+LF+DEAY L + +++DYG EA+E ++ VM+ + +VVI AGY++ M+
Sbjct: 128 RAMGGVLFIDEAYYL--YRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFF 185
Query: 325 ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 359
SN GF R+ F D++ EEL +I +++Q
Sbjct: 186 QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ 220
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 127/215 (59%), Gaps = 12/215 (5%)
Query: 149 RALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP- 207
RA S K ++EL+ EL +GL +K ++R+ A +L++ R+ LGL A P
Sbjct: 14 RAEYEGSGAKEVLEELDREL---IGLKPVKDRIRETAALLLVERARQKLGL---AHETPT 67
Query: 208 -HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 266
H +F GNPGTGKT VA LL+ +G + + V R DLVG+++GHT PKT+ +K
Sbjct: 68 LHXSFTGNPGTGKTTVALKXAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLK 127
Query: 267 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVI 324
A GG+LF+DEAY L + +++DYG EA+E ++ V + + +VVI AGY++ +
Sbjct: 128 RAXGGVLFIDEAYYL--YRPDNERDYGQEAIEILLQVXENNRDDLVVILAGYADRXENFF 185
Query: 325 ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 359
SN GF R+ F D++ EEL +I +++Q
Sbjct: 186 QSNPGFRSRIAHHIEFPDYSDEELFEIAGHXLDDQ 220
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N + + TPLH++A EIV+ LL++ ++ A + YG TPLH
Sbjct: 31 RILMANGADVNATD-WLGHTPLHLAAKTGHLEIVEVLLKYG----ADVNAWDNYGATPLH 85
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
+AA NG E ++LL HGA + AK EG TPL HL+ G ++ E+LL
Sbjct: 86 LAADNGHLEIVEVLLKHGADVNAKDYEGFTPL-HLAAYDGHLEIVEVLL 133
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 7/122 (5%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H A++G L + LL+ + N TPLH++A EIV+ LL+
Sbjct: 51 LHLAAKTGHLEIVEVLLKYGADVNAWDN--YGATPLHLAADNGHLEIVEVLLK----HGA 104
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
++ A++ G TPLH+AA +G E ++LL +GA + A+ GKT D +S G+ L E
Sbjct: 105 DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFD-ISIDNGNEDLAE 163
Query: 137 LL 138
+L
Sbjct: 164 IL 165
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
AA+ G ++ ++L+A+GA + A G TPL HL+ G ++ E+LL
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPL-HLAAKTGHLEIVEVLL 67
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N + TPLH++A EIV+ LL+ + ++ A ++ G TPLH
Sbjct: 31 RILMANGADVNATDN-DGYTPLHLAASNGHLEIVEVLLK----NGADVNASDLTGITPLH 85
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
+AA G E ++LL HGA + A N+G TPL HL+ G ++ E+LL H +
Sbjct: 86 LAAATGHLEIVEVLLKHGADVNAYDNDGHTPL-HLAAKYGHLEIVEVLLKHGAD 138
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H A +G L + LL+ + + + TPLH++A EIV+ LL+
Sbjct: 51 LHLAASNGHLEIVEVLLKNGADV--NASDLTGITPLHLAAATGHLEIVEVLLKH----GA 104
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
++ A + G TPLH+AAK G E ++LL HGA + A+ GKT D +S G+ L E
Sbjct: 105 DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNEDLAE 163
Query: 137 LL 138
+L
Sbjct: 164 IL 165
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
AA+ G ++ ++L+A+GA + A N+G TPL HL+ G ++ E+LL
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPL-HLAASNGHLEIVEVLL 67
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 58/92 (63%), Gaps = 5/92 (5%)
Query: 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
+TPLH++A E+VK LL + + A++ G+TPLH+AA+NG E KLLL+
Sbjct: 37 GKTPLHLAAENGHKEVVKLLL----SQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 92
Query: 108 GAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
GA AK ++GKTPL HL+ G ++ +LLL
Sbjct: 93 GADPNAKDSDGKTPL-HLAAENGHKEVVKLLL 123
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
+TPLH++A E+VK LL + + A++ G+TPLH+AA+NG E KLLL+
Sbjct: 70 GKTPLHLAAENGHKEVVKLLL----SQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 125
Query: 108 GAFIEAKANEGKTPLD 123
GA ++G+TPLD
Sbjct: 126 GADPNTSDSDGRTPLD 141
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
Query: 64 VKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLD 123
VK LLE + ++ A + G+TPLH+AA+NG E KLLL+ GA AK ++GKTPL
Sbjct: 20 VKDLLE----NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPL- 74
Query: 124 HLSNGPGSAKLRELLL 139
HL+ G ++ +LLL
Sbjct: 75 HLAAENGHKEVVKLLL 90
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
+TPLH++A E+VK LL + + + G TPL +A ++G E KLL
Sbjct: 103 GKTPLHLAAENGHKEVVKLLL----SQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Query: 108 GAFIE 112
G ++E
Sbjct: 159 GGWLE 163
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
AA+NG + K LL +GA + A ++GKTPL HL+ G ++ +LLL
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPL-HLAAENGHKEVVKLLL 57
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H A SG L + LL+ + + + V TPLH++A + EIV+ LL+ +
Sbjct: 51 LHLAAYSGHLEIVEVLLKHGADV--DASDVFGYTPLHLAAYWGHLEIVEVLLK----NGA 104
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
++ A + G TPLH+AAK G E ++LL HGA + A+ GKT D +S G+ L E
Sbjct: 105 DVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNEDLAE 163
Query: 137 LL 138
+L
Sbjct: 164 IL 165
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 6/114 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N + TPLH++A EIV+ LL+ +++A +++G TPLH
Sbjct: 31 RILMANGADVNAADNT-GTTPLHLAAYSGHLEIVEVLLK----HGADVDASDVFGYTPLH 85
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
+AA G E ++LL +GA + A ++G TPL HL+ G ++ E+LL H +
Sbjct: 86 LAAYWGHLEIVEVLLKNGADVNAMDSDGMTPL-HLAAKWGYLEIVEVLLKHGAD 138
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
AA+ G ++ ++L+A+GA + A N G TPL HL+ G ++ E+LL H +
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPL-HLAAYSGHLEIVEVLLKHGAD 72
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 72/123 (58%), Gaps = 7/123 (5%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H A++G L +LL E + +N ++ +TPLH++A E+VK LLE
Sbjct: 6 LHLAARNGHL-EVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEA----GA 59
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
++ A++ G TPLH+AA+NG E KLLL GA + AK G+TPL HL+ G ++ +
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL-HLAARNGHLEVVK 118
Query: 137 LLL 139
LLL
Sbjct: 119 LLL 121
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 56/91 (61%), Gaps = 5/91 (5%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+TPLH++A E+VK LLE ++ A++ G TPLH+AA+NG E KLLL G
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
A + AK G+TPL HL+ G ++ +LLL
Sbjct: 59 ADVNAKDKNGRTPL-HLAARNGHLEVVKLLL 88
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 10/106 (9%)
Query: 5 QDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIV 64
+D+ R+ +H A++G L +LL E + +N ++ +TPLH++A E+V
Sbjct: 31 KDKNGRT----PLHLAARNGHL-EVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVV 84
Query: 65 KSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF 110
K LLE ++ A++ G TPLH+AA+NG E KLLL GA+
Sbjct: 85 KLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
G TPLH+AA+NG E KLLL GA + AK G+TPL HL+ G ++ +LLL
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL-HLAARNGHLEVVKLLL 55
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N + V+ TPLH++A + EIV+ LL+ + ++ A + G TPLH
Sbjct: 31 RILMANGADVNAAD-VVGWTPLHLAAYWGHLEIVEVLLK----NGADVNAYDTLGSTPLH 85
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
+AA G E ++LL +GA + AK + G TPL HL+ G ++ E+LL
Sbjct: 86 LAAHFGHLEIVEVLLKNGADVNAKDDNGITPL-HLAANRGHLEIVEVLL 133
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 7/122 (5%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H A G L + LL+ N + +N + + TPLH++A + EIV+ LL+ +
Sbjct: 51 LHLAAYWGHLEIVEVLLK-NGADVNAYD-TLGSTPLHLAAHFGHLEIVEVLLK----NGA 104
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
++ A++ G TPLH+AA G E ++LL +GA + A+ GKT D +S G+ L E
Sbjct: 105 DVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFD-ISINNGNEDLAE 163
Query: 137 LL 138
+L
Sbjct: 164 IL 165
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 6/121 (4%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N + TPLH++A + EIV+ LL+ + ++ A + G TPLH
Sbjct: 23 RILMANGADVNATDD-NGLTPLHLAAANGQLEIVEVLLK----NGADVNASDSAGITPLH 77
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRA 150
+AA +G E ++LL HGA + A G TPL HL+ G ++ E+LL H + + A
Sbjct: 78 LAAYDGHLEIVEVLLKHGADVNAYDRAGWTPL-HLAALSGQLEIVEVLLKHGADVNAQDA 136
Query: 151 L 151
L
Sbjct: 137 L 137
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H A +G L + LL+ N + +N + TPLH++A EIV+ LL+
Sbjct: 43 LHLAAANGQLEIVEVLLK-NGADVNASDSA-GITPLHLAAYDGHLEIVEVLLKH----GA 96
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
++ A + G TPLH+AA +G E ++LL HGA + A+ G T D +S G L E
Sbjct: 97 DVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFD-ISINQGQEDLAE 155
Query: 137 LL 138
+L
Sbjct: 156 IL 157
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
AA G ++ ++L+A+GA + A + G TPL HL+ G ++ E+LL
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPL-HLAAANGQLEIVEVLL 59
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 56/91 (61%), Gaps = 5/91 (5%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+TPLH++A E+VK LLE ++ A++ G TPLH+AA+NG E KLLL G
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
A + AK G+TPL HL+ G ++ +LLL
Sbjct: 59 ADVNAKDKNGRTPL-HLAARNGHLEVVKLLL 88
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H A++G L +LL E + +N ++ +TPLH++A E+VK LLE
Sbjct: 6 LHLAARNGHL-EVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEA----GA 59
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF 110
++ A++ G TPLH+AA+NG E KLLL GA+
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
G TPLH+AA+NG E KLLL GA + AK G+TPL HL+ G ++ +LLL
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL-HLAARNGHLEVVKLLL 55
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N + V TPLH++A + EIV+ LL+ + ++ A + G TPLH
Sbjct: 31 RILMANGADVNASDHV-GWTPLHLAAYFGHLEIVEVLLK----NGADVNADDSLGVTPLH 85
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
+AA G E ++LL +GA + A + G TPL HL+ G ++ E+LL H +
Sbjct: 86 LAADRGHLEVVEVLLKNGADVNANDHNGFTPL-HLAANIGHLEIVEVLLKHGAD 138
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H A G L + LL+ + + + TPLH++A E+V+ LL+ +
Sbjct: 51 LHLAAYFGHLEIVEVLLKNGADV--NADDSLGVTPLHLAADRGHLEVVEVLLK----NGA 104
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
++ A + G TPLH+AA G E ++LL HGA + A+ GKT D +S G+ L E
Sbjct: 105 DVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNEDLAE 163
Query: 137 LL 138
+L
Sbjct: 164 IL 165
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
AA+ G ++ ++L+A+GA + A + G TPL HL+ G ++ E+LL
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPL-HLAAYFGHLEIVEVLL 67
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N + TPLH++A Y EIV+ LL+ ++ A ++ G TPLH
Sbjct: 31 RILMANGADVNATDA-SGLTPLHLAATYGHLEIVEVLLKH----GADVNAIDIMGSTPLH 85
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
+AA G E ++LL HGA + A G TPL HL+ G ++ E+LL H +
Sbjct: 86 LAALIGHLEIVEVLLKHGADVNAVDTWGDTPL-HLAAIMGHLEIVEVLLKHGAD 138
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 8/139 (5%)
Query: 1 MQKNQDRRSRSAKPAT-IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN 59
M D + A T +H A G L + LL+ + +M TPLH++A
Sbjct: 34 MANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV--NAIDIMGSTPLHLAALIG 91
Query: 60 KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGK 119
EIV+ LL+ ++ A + +G+TPLH+AA G E ++LL HGA + A+ GK
Sbjct: 92 HLEIVEVLLKH----GADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 120 TPLDHLSNGPGSAKLRELL 138
T D +S G+ L E+L
Sbjct: 148 TAFD-ISIDNGNEDLAEIL 165
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
AA+ G ++ ++L+A+GA + A G TPL HL+ G ++ E+LL H +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPL-HLAATYGHLEIVEVLLKHGAD 72
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N + TPLH++A Y EIV+ LL+ ++ A ++ G TPLH
Sbjct: 31 RILMANGADVNATDA-SGLTPLHLAATYGHLEIVEVLLKH----GADVNAIDIXGSTPLH 85
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
+AA G E ++LL HGA + A G TPL HL+ G ++ E+LL H +
Sbjct: 86 LAALIGHLEIVEVLLKHGADVNAVDTWGDTPL-HLAAIMGHLEIVEVLLKHGAD 138
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Query: 1 MQKNQDRRSRSAKPAT-IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN 59
M D + A T +H A G L + LL+ + + TPLH++A
Sbjct: 34 MANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV--NAIDIXGSTPLHLAALIG 91
Query: 60 KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGK 119
EIV+ LL+ ++ A + +G+TPLH+AA G E ++LL HGA + A+ GK
Sbjct: 92 HLEIVEVLLKH----GADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 120 TPLDHLSNGPGSAKLRELL 138
T D +S G+ L E+L
Sbjct: 148 TAFD-ISIDNGNEDLAEIL 165
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
AA+ G ++ ++L+A+GA + A G TPL HL+ G ++ E+LL H +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPL-HLAATYGHLEIVEVLLKHGAD 72
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
TPLH +A AE VK LL ++ A++ G TPLH+AAKNG E KLLLA
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLS----KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 108 GAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138
GA + A++ +G TP +HL+ G ++ +LL
Sbjct: 65 GADVNARSKDGNTP-EHLAKKNGHHEIVKLL 94
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H A++G ++LL + + N R+ TPLH++A AEIVK LL
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADV-NARSK-DGNTPLHLAAKNGHAEIVKLLLA----KGA 66
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA 115
++ A++ G TP H+A KNG +E KLL A GA + A++
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
G TPLH AAKNG E K LL+ GA + A++ +G TPL HL+ G A++ +LLL
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPL-HLAAKNGHAEIVKLLL 62
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N R+ TPLH++A + EIV+ LL+ + ++ A++ G TPLH
Sbjct: 31 RILMANGADVNARD-FTGWTPLHLAAHFGHLEIVEVLLK----NGADVNAKDSLGVTPLH 85
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
+AA+ G E ++LL +GA + A + G TPL HL+ G ++ E+LL
Sbjct: 86 LAARRGHLEIVEVLLKNGADVNASDSHGFTPL-HLAAKRGHLEIVEVLL 133
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 74/139 (53%), Gaps = 8/139 (5%)
Query: 1 MQKNQDRRSRSAKPAT-IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN 59
M D +R T +H A G L + LL+ N + +N ++ + TPLH++A
Sbjct: 34 MANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLK-NGADVNAKDS-LGVTPLHLAARRG 91
Query: 60 KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGK 119
EIV+ LL+ + ++ A + +G TPLH+AAK G E ++LL +GA + A+ GK
Sbjct: 92 HLEIVEVLLK----NGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGK 147
Query: 120 TPLDHLSNGPGSAKLRELL 138
T D +S G+ L E+L
Sbjct: 148 TAFD-ISIDNGNEDLAEIL 165
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRAL 151
AA+ G ++ ++L+A+GA + A+ G TPL HL+ G ++ E+LL + + + +L
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPL-HLAAHFGHLEIVEVLLKNGADVNAKDSL 79
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N + TPLH++A EIV+ LL+ + ++ A + G TPLH
Sbjct: 31 RILMANGADVNAED-TYGDTPLHLAARVGHLEIVEVLLK----NGADVNALDFSGSTPLH 85
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
+AAK G E ++LL +GA + A G TPL HL+ G ++ E+LL + +
Sbjct: 86 LAAKRGHLEIVEVLLKYGADVNADDTIGSTPL-HLAADTGHLEIVEVLLKYGAD 138
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H A+ G L + LL+ N + +N + TPLH++A EIV+ LL++
Sbjct: 51 LHLAARVGHLEIVEVLLK-NGADVNALD-FSGSTPLHLAAKRGHLEIVEVLLKY----GA 104
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
++ A + G TPLH+AA G E ++LL +GA + A+ GKT D +S G+ L E
Sbjct: 105 DVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFD-ISIDNGNEDLAE 163
Query: 137 LL 138
+L
Sbjct: 164 IL 165
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
AA+ G ++ ++L+A+GA + A+ G TPL HL+ G ++ E+LL
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPL-HLAARVGHLEIVEVLL 67
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 5/92 (5%)
Query: 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
+TPLH +A EIVK L+ + ++ A++ G TPLH AAK G E KLL++
Sbjct: 37 GRTPLHYAAKEGHKEIVKLLI----SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 92
Query: 108 GAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
GA + AK ++G+TPL H + G ++ +LL+
Sbjct: 93 GADVNAKDSDGRTPL-HYAAKEGHKEIVKLLI 123
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Query: 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
+TPLH +A EIVK L+ + ++ A++ G TPLH AAK G E KLL++
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLI----SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 125
Query: 108 GAFIEAKANEGKTPLD 123
GA + ++G+TPLD
Sbjct: 126 GADVNTSDSDGRTPLD 141
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 64 VKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLD 123
VK L+E + ++ A + G TPLH AAK G E KLL++ GA + AK ++G+TPL
Sbjct: 20 VKDLIE----NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPL- 74
Query: 124 HLSNGPGSAKLRELLL 139
H + G ++ +LL+
Sbjct: 75 HYAAKEGHKEIVKLLI 90
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
+TPLH +A EIVK L+ + ++ + G TPL +A ++G E KLL
Sbjct: 103 GRTPLHYAAKEGHKEIVKLLI----SKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Query: 108 GAFIE 112
G ++E
Sbjct: 159 GGWLE 163
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
AA+NG + K L+ +GA + A ++G+TPL H + G ++ +LL+
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPL-HYAAKEGHKEIVKLLI 57
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
TPLH++A EIV+ LL++ ++ AQ+ YG TPLH+AA G E ++LL HGA
Sbjct: 82 TPLHLAADNGHLEIVEVLLKY----GADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA 137
Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELL 138
+ A+ GKT D +S G+ L E+L
Sbjct: 138 DVNAQDKFGKTAFD-ISIDNGNEDLAEIL 165
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N + TPLH++A EIV+ LL+ ++ A++ G TPLH
Sbjct: 31 RILMANGADVNAHDD-QGSTPLHLAAWIGHPEIVEVLLK----HGADVNARDTDGWTPLH 85
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
+AA NG E ++LL +GA + A+ G TPL HL+ G ++ E+LL H +
Sbjct: 86 LAADNGHLEIVEVLLKYGADVNAQDAYGLTPL-HLAADRGHLEIVEVLLKHGAD 138
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 148
AA+ G ++ ++L+A+GA + A ++G TPL HL+ G ++ E+LL H + R
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPL-HLAAWIGHPEIVEVLLKHGADVNAR 76
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
+TPLH +A E+VK L+ + ++ A++ G TPLH AA+NG E KLL++
Sbjct: 37 GRTPLHHAAENGHKEVVKLLI----SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 108 GAFIEAKANEGKTPLDH 124
GA + AK ++G+TPL H
Sbjct: 93 GADVNAKDSDGRTPLHH 109
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
+TPLH +A E+VK L+ + ++ A++ G TPLH AA+NG E KLL++
Sbjct: 70 GRTPLHHAAENGHKEVVKLLI----SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 125
Query: 108 GAFIEAKANEGKTPLD 123
GA + ++G+TPLD
Sbjct: 126 GADVNTSDSDGRTPLD 141
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 64 VKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLD 123
VK L+E + ++ A + G TPLH AA+NG E KLL++ GA + AK ++G+TPL
Sbjct: 20 VKDLIE----NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLH 75
Query: 124 H 124
H
Sbjct: 76 H 76
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
+TPLH +A E+VK L+ + ++ + G TPL +A ++G E KLL
Sbjct: 103 GRTPLHHAAENGHKEVVKLLI----SKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Query: 108 GAFIE 112
G ++E
Sbjct: 159 GGWLE 163
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDH 124
AA+NG + K L+ +GA + A ++G+TPL H
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHH 43
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H A G L + LL+ + N + M TPLH++A Y EIV+ LL+ +
Sbjct: 51 LHLAAIKGHLEIVEVLLKHGADV-NAADK-MGDTPLHLAALYGHLEIVEVLLK----NGA 104
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
++ A + YG TPLH+AA G E ++LL +GA + A+ GKT D +S G+ L E
Sbjct: 105 DVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFD-ISIDNGNEDLAE 163
Query: 137 LL 138
+L
Sbjct: 164 IL 165
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N + +TPLH++A EIV+ LL+ ++ A + G+TPLH
Sbjct: 31 RILMANGADVNAEDD-SGKTPLHLAAIKGHLEIVEVLLKHG----ADVNAADKMGDTPLH 85
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
+AA G E ++LL +GA + A G TPL HL+ G ++ E+LL + +
Sbjct: 86 LAALYGHLEIVEVLLKNGADVNATDTYGFTPL-HLAADAGHLEIVEVLLKYGAD 138
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
AA+ G ++ ++L+A+GA + A+ + GKTPL HL+ G ++ E+LL H +
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPL-HLAAIKGHLEIVEVLLKHGAD 72
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N N TPLH++A Y+ EIV+ LL+ ++ A + G TPLH
Sbjct: 31 RILMANGADVN-ANDRKGNTPLHLAADYDHLEIVEVLLKHG----ADVNAHDNDGSTPLH 85
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138
+AA G E ++LL HGA + A+ GKT D +S G+ L E+L
Sbjct: 86 LAALFGHLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
++ A + G TPLH+AA E ++LL HGA + A N+G TPL HL+ G ++ E
Sbjct: 39 DVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPL-HLAALFGHLEIVE 97
Query: 137 LLLWHSEE 144
+LL H +
Sbjct: 98 VLLKHGAD 105
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
AA+ G ++ ++L+A+GA + A +G TPL HL+ ++ E+LL H +
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPL-HLAADYDHLEIVEVLLKHGAD 72
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N + TPLH++A EIV+ LL+ +++A ++YG TPLH
Sbjct: 31 RILIANGADVNAVDNT-GLTPLHLAAVSGHLEIVEVLLKH----GADVDAADVYGFTPLH 85
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
+AA G E ++LL +GA + A G TPL HL+ G ++ E+LL + +
Sbjct: 86 LAAMTGHLEIVEVLLKYGADVNAFDMTGSTPL-HLAADEGHLEIVEVLLKYGAD 138
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H A SG L + LL+ + + V TPLH++A EIV+ LL++
Sbjct: 51 LHLAAVSGHLEIVEVLLKHGADV--DAADVYGFTPLHLAAMTGHLEIVEVLLKY----GA 104
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLD 123
++ A +M G TPLH+AA G E ++LL +GA + A+ GKT D
Sbjct: 105 DVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFD 151
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H A +G L + LL+ + + TPLH++A EIV+ LL++
Sbjct: 84 LHLAAMTGHLEIVEVLLKYGADV--NAFDMTGSTPLHLAADEGHLEIVEVLLKY----GA 137
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAK 102
++ AQ+ +G+T ++ NG + AK
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
AA+ G ++ ++L+A+GA + A N G TPL HL+ G ++ E+LL H +
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPL-HLAAVSGHLEIVEVLLKHGAD 72
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 30/131 (22%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVE---------LEAQ------------------- 81
TPLH++A N+ E+ +SLL++ G+ E L AQ
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 273
Query: 82 -NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLW 140
N G TPLH+ A+ G A +L+ HG ++A G TPL H+++ G+ KL + LL
Sbjct: 274 GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPL-HVASHYGNIKLVKFLLQ 332
Query: 141 HSEEQRKRRAL 151
H + + L
Sbjct: 333 HQADVNAKTKL 343
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
TPLHV++ IVK+LL+ + V N+ ETPLHMAA+ G E AK LL + A
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVS----NVKVETPLHMAARAGHTEVAKYLLQNKA 71
Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
+ AKA + +TPL H + G + +LLL
Sbjct: 72 KVNAKAKDDQTPL-HCAARIGHTNMVKLLL 100
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
TPLHV+ +N +IVK LL G+ + G TPLH+AAK E A+ LL +G
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSP----HSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236
Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
A++ +G TPL HL+ G A++ LLL
Sbjct: 237 SANAESVQGVTPL-HLAAQEGHAEMVALLL 265
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H AQ G + L++ ++ + M TPLHV++ Y ++VK LL+ +
Sbjct: 282 LHLVAQEGHVPVADVLIKH--GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ----HQA 335
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122
++ A+ G +PLH AA+ G + LLL +GA +++G TPL
Sbjct: 336 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPL 381
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 10/108 (9%)
Query: 17 IHGCAQSGDLLAFQRLLRE--NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND 74
+H + G L + LL+ +P++ N V +TPLH++A E+ K LL+ +
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVSN----VKVETPLHMAARAGHTEVAKYLLQ----N 69
Query: 75 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122
K ++ A+ +TPLH AA+ G KLLL + A G TPL
Sbjct: 70 KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPL 117
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 39 LLNERNPVMA----QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK 94
L N NP +A TPLH++A E V +LLE + G TPLH+AAK
Sbjct: 100 LENNANPNLATTAGHTPLHIAAREGHVETVLALLE----KEASQACMTKKGFTPLHVAAK 155
Query: 95 NGCNEAAKLLLAHGAFIEAKANEGKTPL 122
G A+LLL A A G TPL
Sbjct: 156 YGKVRVAELLLERDAHPNAAGKNGLTPL 183
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
TPLHV+A Y K + + LLE + A G TPLH+A + + KLLL G
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAHPN----AAGKNGLTPLHVAVHHNNLDIVKLLLPRGG 203
Query: 110 FIEAKANEGKTPL 122
+ A G TPL
Sbjct: 204 SPHSPAWNGYTPL 216
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
+TPLH +A EIVK LL + + A++ G TPLH AA+NG E KLLL+
Sbjct: 37 GRTPLHYAAENGHKEIVKLLL----SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 108 GAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
GA AK ++G+TPL H + G ++ +LLL
Sbjct: 93 GADPNAKDSDGRTPL-HYAAENGHKEIVKLLL 123
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
+TPLH +A EIVK LL + + A++ G TPLH AA+NG E KLLL+
Sbjct: 70 GRTPLHYAAENGHKEIVKLLL----SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 125
Query: 108 GAFIEAKANEGKTPLD 123
GA ++G+TPLD
Sbjct: 126 GADPNTSDSDGRTPLD 141
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 64 VKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLD 123
VK LLE + + A + G TPLH AA+NG E KLLL+ GA AK ++G+TPL
Sbjct: 20 VKDLLE----NGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPL- 74
Query: 124 HLSNGPGSAKLRELLL 139
H + G ++ +LLL
Sbjct: 75 HYAAENGHKEIVKLLL 90
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
+TPLH +A EIVK LL + + + G TPL +A ++G E KLL
Sbjct: 103 GRTPLHYAAENGHKEIVKLLL----SKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Query: 108 GAFIE 112
G ++E
Sbjct: 159 GGWLE 163
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
TPLH++A EIV+ LL++ ++ A++ +G TPLH+AA G E ++LL HGA
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYG----ADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGA 104
Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELL 138
+ A+ GKT D +S G+ L E+L
Sbjct: 105 DVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
G TPLH+AA+ G E ++LL +GA + A+ N G TPL HL+ G ++ E+LL H +
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPL-HLAAIRGHLEIVEVLLKHGAD 105
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
AA+ G ++ ++L+A+GA + A +G TPL HL+ G ++ E+LL + +
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPL-HLAAQLGHLEIVEVLLKYGAD 72
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N ++ TPLH++A EIV+ LL+ ++ A++ G TPLH
Sbjct: 31 RILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAG----ADVNAKDKDGYTPLH 85
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
+AA+ G E ++LL GA + AK +G TPL HL+ G ++ E+LL
Sbjct: 86 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPL-HLAAREGHLEIVEVLL 133
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 7/122 (5%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H A+ G L + LL+ + N ++ TPLH++A EIV+ LL+
Sbjct: 51 LHLAAREGHLEIVEVLLKAGADV-NAKDK-DGYTPLHLAAREGHLEIVEVLLKAG----A 104
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
++ A++ G TPLH+AA+ G E ++LL GA + A+ GKT D +S G+ L E
Sbjct: 105 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFD-ISIDNGNEDLAE 163
Query: 137 LL 138
+L
Sbjct: 164 IL 165
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
AA+ G ++ ++L+A+GA + AK +G TPL HL+ G ++ E+LL
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPL-HLAAREGHLEIVEVLL 67
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 21 AQSGDLLAFQRLLRENPSLLNERNPVMAQ-TPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79
A++GD+ ++L +N R+ Q TPLH +AGYN+ +V+ LL+ ++
Sbjct: 20 AKAGDVETVKKLCTVQS--VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH----GADVH 73
Query: 80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
A++ G PLH A G E A+LL+ HGA + TPL H + G ++ +LLL
Sbjct: 74 AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPL-HEAAAKGKYEICKLLL 132
Query: 140 WHSEEQRKR 148
H + K+
Sbjct: 133 QHGADPTKK 141
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N + V TPLH++A + EIV+ LL+ + ++ A + GETPLH
Sbjct: 31 RILMANGADVNAEDKV-GLTPLHLAAMNDHLEIVEVLLK----NGADVNAIDAIGETPLH 85
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138
+ A G E ++LL HGA + A+ GKT D +S G+ L E+L
Sbjct: 86 LVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRAL 151
AA+ G ++ ++L+A+GA + A+ G TPL HL+ ++ E+LL + + A+
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPL-HLAAMNDHLEIVEVLLKNGAD---VNAI 76
Query: 152 EACSET 157
+A ET
Sbjct: 77 DAIGET 82
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 21 AQSGDLLAFQRLLRENPSLLNERNPVMAQ-TPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79
A++GD+ ++L +N R+ Q TPLH +AGYN+ +V+ LL+ ++
Sbjct: 16 AKAGDVETVKKLCTVQS--VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH----GADVH 69
Query: 80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
A++ G PLH A G E A+LL+ HGA + TPL H + G ++ +LLL
Sbjct: 70 AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPL-HEAAAKGKYEICKLLL 128
Query: 140 WHSEEQRKR 148
H + K+
Sbjct: 129 QHGADPTKK 137
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 21 AQSGDLLAFQRLLRENPSLLNERNPVMAQ-TPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79
A++GD+ ++L +N R+ Q TPLH +AGYN+ +V+ LL+ ++
Sbjct: 18 AKAGDVETVKKLCTVQS--VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH----GADVH 71
Query: 80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
A++ G PLH A G E A+LL+ HGA + TPL H + G ++ +LLL
Sbjct: 72 AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPL-HEAAAKGKYEICKLLL 130
Query: 140 WHSEEQRKR 148
H + K+
Sbjct: 131 QHGADPTKK 139
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N ++ TPLH++A EIV+ LL+ + + A++ G TPLH
Sbjct: 19 RILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLH 73
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
+AA+ G E ++LL GA + AK +G TPL HL+ G ++ E+LL
Sbjct: 74 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPL-HLAAREGHLEIVEVLL 121
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H A+ G L + LL+ + N ++ TPLH++A EIV+ LL+ +
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADV-NAKDK-DGYTPLHLAAREGHLEIVEVLLKAGAD--- 93
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLD 123
+ A++ G TPLH+AA+ G E ++LL GA + A+ GKTP D
Sbjct: 94 -VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFD 139
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
AA+ G ++ ++L+A+GA + AK +G TPL HL+ G ++ E+LL
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPL-HLAAREGHLEIVEVLL 55
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N ++ TPLH++A EIV+ LL+ ++ A++ G TPLH
Sbjct: 19 RILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAG----ADVNAKDKDGYTPLH 73
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
+AA+ G E ++LL GA + AK +G TPL HL+ G ++ E+LL
Sbjct: 74 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPL-HLAAREGHLEIVEVLL 121
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H A+ G L + LL+ + N ++ TPLH++A EIV+ LL+
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADV-NAKDK-DGYTPLHLAAREGHLEIVEVLLKAG----A 92
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
++ A++ G TPLH+AA+ G E ++LL GA + A+ GKTP D L+ G+ + E
Sbjct: 93 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFD-LAIDNGNEDIAE 151
Query: 137 LL 138
+L
Sbjct: 152 VL 153
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
AA+ G ++ ++L+A+GA + AK +G TPL HL+ G ++ E+LL
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPL-HLAAREGHLEIVEVLL 55
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N ++ TPL+++ + EIV+ LL+ + ++ A + G TPLH
Sbjct: 31 RILMANGADVNAKDE-YGLTPLYLATAHGHLEIVEVLLK----NGADVNAVDAIGFTPLH 85
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138
+AA G E A++LL HGA + A+ GKT D +S G G+ L E+L
Sbjct: 86 LAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFD-ISIGNGNEDLAEIL 132
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
AA+ G ++ ++L+A+GA + AK G TPL +L+ G ++ E+LL
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPL-YLATAHGHLEIVEVLL 67
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N N TPLH+ EI++ LL++ ++ A + G TPLH
Sbjct: 31 RILMANGADVN-ANDWFGITPLHLVVNNGHLEIIEVLLKYAA----DVNASDKSGWTPLH 85
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
+AA G E ++LL +GA + A +G TPL HL+ G ++ E+LL
Sbjct: 86 LAAYRGHLEIVEVLLKYGADVNAMDYQGYTPL-HLAAEDGHLEIVEVLL 133
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
TPLH++A EIV+ LL++ ++ A + G TPLH+AA++G E ++LL +GA
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKY----GADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELL 138
+ A+ GKT D +S G+ L E+L
Sbjct: 138 DVNAQDKFGKTAFD-ISIDNGNEDLAEIL 165
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
AA+ G ++ ++L+A+GA + A G TPL HL G ++ E+LL
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPL-HLVVNNGHLEIIEVLL 67
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + N + +TPLH++A EIV+ LL + ++ A + G TPLH
Sbjct: 19 RILMANGADANAYDH-YGRTPLHMAAAVGHLEIVEVLLR----NGADVNAVDTNGTTPLH 73
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
+AA G E ++LL +GA + AK G TPL +L+ G ++ E+LL H +
Sbjct: 74 LAASLGHLEIVEVLLKYGADVNAKDATGITPL-YLAAYWGHLEIVEVLLKHGAD 126
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H A G L + LLR N + +N + TPLH++A EIV+ LL++
Sbjct: 39 LHMAAAVGHLEIVEVLLR-NGADVNAVD-TNGTTPLHLAASLGHLEIVEVLLKY----GA 92
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
++ A++ G TPL++AA G E ++LL HGA + A+ GKT D +S G+ L E
Sbjct: 93 DVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDIGNEDLAE 151
Query: 137 LL 138
+L
Sbjct: 152 IL 153
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
A + YG TPLHMAA G E ++LL +GA + A G TPL HL+ G ++ E+LL
Sbjct: 30 AYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPL-HLAASLGHLEIVEVLL 88
Query: 140 WHSEEQRKRRA 150
+ + + A
Sbjct: 89 KYGADVNAKDA 99
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
AA+ G ++ ++L+A+GA A + G+TPL H++ G ++ E+LL
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPL-HMAAAVGHLEIVEVLL 55
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N + TPLH++A EIV+ LL+ ++ A++++G TPLH
Sbjct: 31 RILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHG----ADVNARDIWGRTPLH 85
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138
+AA G E ++LL +GA + A+ GKT D +S G+ L E+L
Sbjct: 86 LAATVGHLEIVEVLLEYGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
++ A + G TPLH+AAK G E ++LL HGA + A+ G+TPL HL+ G ++ E
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPL-HLAATVGHLEIVE 97
Query: 137 LLL 139
+LL
Sbjct: 98 VLL 100
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 148
A + G ++ ++L+A+GA + A + G TPL HL+ G ++ E+LL H + R
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPL-HLAAKRGHLEIVEVLLKHGADVNAR 76
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N + TPLH++A EIV+ LL+ ++ A +++G TPLH
Sbjct: 31 RILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHG----ADVNASDIWGRTPLH 85
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138
+AA G E ++LL +GA + A+ GKT D +S G+ L E+L
Sbjct: 86 LAATVGHLEIVEVLLEYGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
++ A + G TPLH+AAK G E ++LL HGA + A G+TPL HL+ G ++ E
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPL-HLAATVGHLEIVE 97
Query: 137 LLL 139
+LL
Sbjct: 98 VLL 100
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
A + G ++ ++L+A+GA + A + G TPL HL+ G ++ E+LL H +
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPL-HLAAKRGHLEIVEVLLKHGAD 72
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 9/89 (10%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
TPLH++A + +IV+ LL++ K ++ A N +G PLH A G ++ A+ L+A+GA
Sbjct: 69 TPLHLAASHGHRDIVQKLLQY----KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124
Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELL 138
+ G+ P+D A LRELL
Sbjct: 125 LVSICNKYGEMPVD-----KAKAPLRELL 148
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
+PLH + ++ +V+ L+ + N +TPLH+AA +G + + LL + A
Sbjct: 36 SPLHWACREGRSAVVEMLIM----RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 91
Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
I A G PL H + G ++ E L+
Sbjct: 92 DINAVNEHGNVPL-HYACFWGQDQVAEDLV 120
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 70 WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGP 129
W N + +L + +G +PLH A + G + ++L+ GA I TPL HL+
Sbjct: 19 WLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPL-HLAASH 77
Query: 130 GSAKLRELLL 139
G + + LL
Sbjct: 78 GHRDIVQKLL 87
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 9/89 (10%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
TPLH++A + +IV+ LL++ K ++ A N +G PLH A G ++ A+ L+A+GA
Sbjct: 74 TPLHLAASHGHRDIVQKLLQY----KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129
Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELL 138
+ G+ P+D A LRELL
Sbjct: 130 LVSICNKYGEMPVD-----KAKAPLRELL 153
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
+PLH + ++ +V+ L+ + N +TPLH+AA +G + + LL + A
Sbjct: 41 SPLHWACREGRSAVVEMLIM----RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 96
Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
I A G PL H + G ++ E L+
Sbjct: 97 DINAVNEHGNVPL-HYACFWGQDQVAEDLV 125
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 70 WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGP 129
W N + +L + +G +PLH A + G + ++L+ GA I TPL HL+
Sbjct: 24 WLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPL-HLAASH 82
Query: 130 GSAKLRELLL 139
G + + LL
Sbjct: 83 GHRDIVQKLL 92
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N + TPLH++A EIV+ LL+ ++ A + +G TPLH
Sbjct: 31 RILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHG----ADVNASDSWGRTPLH 85
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138
+AA G E ++LL +GA + A+ GKT D +S G+ L E+L
Sbjct: 86 LAATVGHLEIVEVLLEYGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
++ A + G TPLH+AAK G E ++LL HGA + A + G+TPL HL+ G ++ E
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPL-HLAATVGHLEIVE 97
Query: 137 LLL 139
+LL
Sbjct: 98 VLL 100
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
A + G ++ ++L+A+GA + A + G TPL HL+ G ++ E+LL H +
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPL-HLAAKRGHLEIVEVLLKHGAD 72
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N N TPLH++A EIV+ LL+ + ++ A G TPLH
Sbjct: 31 RILTANGADVNA-NDYWGHTPLHLAAMLGHLEIVEVLLK----NGADVNATGNTGRTPLH 85
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138
+AA E ++LL HGA + A+ GKT D +S G+ L E+L
Sbjct: 86 LAAWADHLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
++ A + +G TPLH+AA G E ++LL +GA + A N G+TPL HL+ ++ E
Sbjct: 39 DVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPL-HLAAWADHLEIVE 97
Query: 137 LLLWHSEE 144
+LL H +
Sbjct: 98 VLLKHGAD 105
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
AA+ G ++ ++L A+GA + A G TPL HL+ G ++ E+LL
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPL-HLAAMLGHLEIVEVLL 67
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 12/141 (8%)
Query: 1 MQKNQDRRSRSAKPAT-IHGCAQSGDLLAFQRLLRENPSLLNERNPV--MAQTPLHVSAG 57
M D + A T +H A +G L + LL+ + N V TPL ++A
Sbjct: 34 MANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV----NAVDHAGMTPLRLAAL 89
Query: 58 YNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANE 117
+ EIV+ LL+ + ++ A +M G TPLH+AA G E ++LL +GA + A+
Sbjct: 90 FGHLEIVEVLLK----NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF 145
Query: 118 GKTPLDHLSNGPGSAKLRELL 138
GKT D +S G+ L E+L
Sbjct: 146 GKTAFD-ISIDNGNEDLAEIL 165
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N + TPLH++A EIV+ LL+ + ++ A + G TPL
Sbjct: 31 RILMANGADVNAEDA-SGWTPLHLAAFNGHLEIVEVLLK----NGADVNAVDHAGMTPLR 85
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
+AA G E ++LL +GA + A EG TPL HL+ G ++ E+LL
Sbjct: 86 LAALFGHLEIVEVLLKNGADVNANDMEGHTPL-HLAAMFGHLEIVEVLL 133
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
AA+ G ++ ++L+A+GA + A+ G TPL HL+ G ++ E+LL
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPL-HLAAFNGHLEIVEVLL 67
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
TPLH++AGYN+ IV+ LL+ G D + A++ G PLH A G E +LLL HGA
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQH-GAD---VHAKDKGGLVPLHNACSYGHYEVTELLLKHGA 115
Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
+ A TPL H + ++ LLL H
Sbjct: 116 CVNAMDLWQFTPL-HEAASKNRVEVCSLLLSH 146
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 76 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLR 135
V A + TPLH+AA +LLL HGA + AK G PL H + G ++
Sbjct: 49 VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPL-HNACSYGHYEVT 107
Query: 136 ELLLWH 141
ELLL H
Sbjct: 108 ELLLKH 113
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 39 LLNERNPVMAQTPLH--VSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG 96
++N + P +T LH V++ + K + V LL G + E M TPLH+AA+
Sbjct: 202 IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFM---TPLHVAAERA 258
Query: 97 CNEAAKLLLAHGAFIEAKANEGKTPL 122
N+ ++L HGA + A + G+T L
Sbjct: 259 HNDVMEVLHKHGAKMNALDSLGQTAL 284
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
QT H++ + +++LL+ ++LEA+N G T LH+A C E +LLL G
Sbjct: 80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG 139
Query: 109 AFIEA-KANEGKTPLDHLSNGPGSAKLRELLLWH 141
A I+A G++PL H S + +LLL H
Sbjct: 140 ADIDAVDIKSGRSPLIHAVEN-NSLSMVQLLLQH 172
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGN-DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
T LHV+ E V+ LLE + D V++++ G +PL A +N +LLL HG
Sbjct: 118 TALHVAVNTECQETVQLLLERGADIDAVDIKS----GRSPLIHAVENNSLSMVQLLLQHG 173
Query: 109 AFIEAKANEGKTPLDHLSNGPG 130
A + A+ G + L H ++G G
Sbjct: 174 ANVNAQMYSGSSAL-HSASGRG 194
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
TPLH++ V L+ EL+ N +TPLH+A +LL+ GA
Sbjct: 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 70
Query: 110 FIEAKANEGKT 120
A G+T
Sbjct: 71 SPMALDRHGQT 81
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 11/120 (9%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
PLH++ ++VK LL+ + +++ G TPL A G +E LLL HGA
Sbjct: 121 VPLHLACQQGHFQVVKCLLD----SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGA 176
Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE-----QRKRRALEACSETKAKMDEL 164
I A N+G T L H + + ELLL H +R+R A++ C+E +K+ EL
Sbjct: 177 SINASNNKGNTAL-HEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVD-CAEQNSKIMEL 234
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
G +PLH+AA +G + LLL HGA A+ + PL HL+ G ++ + LL
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPL-HLACQQGHFQVVKCLL 139
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
+PLH++A + EIVK+LL ++ A N G TPLH AA +E A +LL GA
Sbjct: 75 SPLHIAASAGRDEIVKALL----GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
+AK + T + H + G+ K+ +LL++
Sbjct: 131 NPDAKDHYEATAM-HRAAAKGNLKMIHILLYY 161
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 21 AQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEW--PGNDKVEL 78
A SG L + + + SL R ++T LH + EIV+ LL+ P NDK +
Sbjct: 14 AYSGKLEELKESILADKSLAT-RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 79 EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSN 127
G +PLH+AA G +E K LL GA + A G TPL + ++
Sbjct: 73 ------GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAAS 115
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 44/110 (40%), Gaps = 29/110 (26%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGN----DKVELEA------------------------- 80
TPLH +A N+ EI LLE N D E A
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI 167
Query: 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPG 130
Q+ G TPLH+A E AKLL++ GA I + E KTPL G G
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLG 217
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
+PLH++A + EIVK+LL ++ A N G TPLH AA +E A +LL GA
Sbjct: 76 SPLHIAASAGRDEIVKALL----GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 131
Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
+AK + T + H + G+ K+ +LL++
Sbjct: 132 NPDAKDHYEATAM-HRAAAKGNLKMIHILLYY 162
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 21 AQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEW--PGNDKVEL 78
A SG L + + + SL R ++T LH + EIV+ LL+ P NDK +
Sbjct: 15 AYSGKLEELKESILADKSLAT-RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 73
Query: 79 EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSN 127
G +PLH+AA G +E K LL GA + A G TPL + ++
Sbjct: 74 ------GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAAS 116
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 44/110 (40%), Gaps = 29/110 (26%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGN----DKVELEA------------------------- 80
TPLH +A N+ EI LLE N D E A
Sbjct: 109 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI 168
Query: 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPG 130
Q+ G TPLH+A E AKLL++ GA I + E KTPL G G
Sbjct: 169 QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLG 218
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H AQ G + LLR S + + +TPLH++A A IV+ LL+
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVS--RDARTKVDRTPLHMAASEGHANIVEVLLK----HGA 91
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
++ A++M T LH A ++ E +LL+ +GA + ++ KT D +S G+ L E
Sbjct: 92 DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFD-ISIDNGNEDLAE 150
Query: 137 LL 138
+L
Sbjct: 151 IL 152
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 106
+ +PLH++A Y + LL V +A+ TPLHMAA G ++LL
Sbjct: 33 LGTSPLHLAAQYGHFSTTEVLLR----AGVSRDARTKVDRTPLHMAASEGHANIVEVLLK 88
Query: 107 HGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
HGA + AK T L H + ++ ELL+
Sbjct: 89 HGADVNAKDMLKMTAL-HWATEHNHQEVVELLI 120
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 11/136 (8%)
Query: 6 DRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVK 65
D+ SR+A +H +G + LL+ + N+++ +PLH++A + EIVK
Sbjct: 37 DQDSRTA----LHWACSAGHTEIVEFLLQLGVPV-NDKDDA-GWSPLHIAASAGRDEIVK 90
Query: 66 SLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHL 125
+LL + A N G TPLH AA +E A +LL GA +AK + T + H
Sbjct: 91 ALLV----KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAM-HR 145
Query: 126 SNGPGSAKLRELLLWH 141
+ G+ K+ +LL++
Sbjct: 146 AAAKGNLKMVHILLFY 161
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 21 AQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEW--PGNDKVEL 78
A SG L + + + SL R ++T LH + EIV+ LL+ P NDK +
Sbjct: 14 AYSGKLDELKERILADKSLAT-RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 79 EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSN 127
G +PLH+AA G +E K LL GA + A G TPL + ++
Sbjct: 73 ------GWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAAS 115
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
TPLH +A N+ EI LLE N +A++ Y T +H AA G + +LL + A
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANP----DAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163
Query: 110 FIEAKANEGKTPLDHLS 126
+ EG TPL HL+
Sbjct: 164 STNIQDTEGNTPL-HLA 179
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 163 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 219
E E E N VG ++ + QL + + + L R AL +G + P + G PGTGK
Sbjct: 192 EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 220 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGI 272
T++AR + G ++ + +++ + G + R+ +EAE I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 273 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 319
+F+DE + P ++ + + +++++MDG K V++ A + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 163 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 219
E E E N VG ++ + QL + + + L R AL +G + P + G PGTGK
Sbjct: 192 EDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 220 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGI 272
T++AR + G ++ + +++ + G + R+ +EAE I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 273 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 319
+F+DE + P ++ + + +++++MDG K V++ A + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 163 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 219
E E E N VG ++ + QL + + + L R AL +G + P + G PGTGK
Sbjct: 192 EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 220 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEG---GI 272
T++AR + G ++ + +++ + G + R+ +EAE I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 273 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 319
+F+DE + P ++ + + +++++MDG K V++ A + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 163 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 219
E E E N VG ++ + QL + + + L R AL +G + P + G PGTGK
Sbjct: 192 EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 220 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEG---GI 272
T++AR + G ++ + +++ + G + R+ +EAE I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 273 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 319
+F+DE + P ++ + + +++++MDG K V++ A + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 163 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 219
E E E N VG ++ + QL + + + L R AL +G + P + G PGTGK
Sbjct: 192 EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 220 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEG---GI 272
T++AR + G ++ + +++ + G + R+ +EAE I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 273 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 319
+F+DE + P ++ + + +++++MDG K V++ A + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 21 AQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEW--PGNDKVEL 78
A SG L + + + SL R ++T LH + EIV+ LL+ P NDK +
Sbjct: 14 AYSGKLDELKERILADKSLAT-RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 79 EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSN 127
G +PLH+AA G +E K LL GA + A G TPL + ++
Sbjct: 73 ------GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAAS 115
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 11/136 (8%)
Query: 6 DRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVK 65
D+ SR+A +H +G + LL+ + N+++ +PLH++A EIVK
Sbjct: 37 DQDSRTA----LHWACSAGHTEIVEFLLQLGVPV-NDKDDA-GWSPLHIAASAGXDEIVK 90
Query: 66 SLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHL 125
+LL + A N G TPLH AA +E A +LL GA +AK + T + H
Sbjct: 91 ALLV----KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAM-HR 145
Query: 126 SNGPGSAKLRELLLWH 141
+ G+ K+ +LL++
Sbjct: 146 AAAKGNLKMVHILLFY 161
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
TPLH +A N+ EI LLE N +A++ Y T +H AA G + +LL + A
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANP----DAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163
Query: 110 FIEAKANEGKTPLDHLS 126
+ EG TPL HL+
Sbjct: 164 STNIQDTEGNTPL-HLA 179
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 1 MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK 60
+QK+QD R P Q+ ++ +F EN +L ++ TP H++
Sbjct: 30 LQKDQDGRI----PLHWSVSFQAHEITSFLLSKMENVNL-DDYPDDSGWTPFHIACSVGN 84
Query: 61 AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKT 120
E+VKSL + P K +L G T LH+A E ++ L+ +GA + K +
Sbjct: 85 LEVVKSLYDRPL--KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 121 PLDHLSNGPGSAKLRELL 138
PL H + GS KL ELL
Sbjct: 143 PL-HRAASVGSLKLIELL 159
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 76 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLR 135
++ A++ G TPLH+AA+NG E KLLL GA + A+ GKT D +S G+ L
Sbjct: 30 ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFD-ISIDNGNEDLA 88
Query: 136 ELL 138
E+L
Sbjct: 89 EIL 91
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 104
TPLH++A E+VK LLE ++ AQ+ +G+T ++ NG + A++L
Sbjct: 41 TPLHLAARNGHLEVVKLLLEAG----ADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
AA+ G ++ ++L+A+GA + AK G TPL HL+ G ++ +LLL
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPL-HLAARNGHLEVVKLLL 59
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 1 MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK 60
+QK+QD R P Q+ ++ +F EN +L ++ TP H++
Sbjct: 30 LQKDQDGRI----PLHWSVSFQAHEITSFLLSKMENVNL-DDYPDDSGWTPFHIACSVGN 84
Query: 61 AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKT 120
E+VKSL + P K +L G T LH+A E ++ L+ +GA + K +
Sbjct: 85 LEVVKSLYDRPL--KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 121 PLDHLSNGPGSAKLRELL 138
PL H + GS KL ELL
Sbjct: 143 PL-HRAASVGSLKLIELL 159
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 1 MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK 60
+QK+QD R P Q+ ++ +F EN +L ++ TP H++
Sbjct: 30 LQKDQDGRI----PLHWSVSFQAHEITSFLLSKMENVNL-DDYPDDSGWTPFHIACSVGN 84
Query: 61 AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKT 120
E+VKSL + P K +L G T LH+A E ++ L+ +GA + K +
Sbjct: 85 LEVVKSLYDRPL--KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 121 PLDHLSNGPGSAKLRELL 138
PL H + GS KL ELL
Sbjct: 143 PL-HRAASVGSLKLIELL 159
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 163 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 219
E E E N VG ++ + QL + + + L R AL +G + P + G PGTGK
Sbjct: 192 EDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 220 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEG---GI 272
T++AR + G ++ + +++ + G + R+ +EAE I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 273 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 319
+F+DE + P ++ + + +++++MDG K V++ A + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 76 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLR 135
++ A++ G TPLH+AA+NG E KLLL GA + A+ GKT D +S G+ L
Sbjct: 48 ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD-ISIDNGNEDLA 106
Query: 136 ELL 138
E+L
Sbjct: 107 EIL 109
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 104
TPLH++A E+VK LLE ++ AQ+ +G+T ++ NG + A++L
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAG----ADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
AA+ G ++ ++L+A+GA + AK G TPL HL+ G ++ +LLL
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPL-HLAARNGHLEVVKLLL 77
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND 74
A SGD RLL E + +N N V T LH + + ++VK L+E N
Sbjct: 42 AVFLAACSSGDTEEVLRLL-ERGADINYAN-VDGLTALHQACIDDNVDMVKFLVENGAN- 98
Query: 75 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLD 123
+ + G PLH AA G + A+ L++ GA + A +EG TPLD
Sbjct: 99 ---INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLD 144
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 32 LLRENPSLLNE------RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYG 85
+LR+ LN R+ T LHV+A E++K L++ + ++ ++ G
Sbjct: 177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ----ARYDVNIKDYDG 232
Query: 86 ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL----LWH 141
TPLH AA G EA ++L+ + +EA G+T D +++ L EL L H
Sbjct: 233 WTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFD-VADEDILGYLEELQKKQNLLH 291
Query: 142 SEEQRKR 148
SE++ K+
Sbjct: 292 SEKREKK 298
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H + GD+ + + LL +N S N ++ TPLH + + ++V+ LL+ K
Sbjct: 14 LHIASIKGDIPSVEYLL-QNGSDPNVKDHA-GWTPLHEACNHGHLKVVELLLQ----HKA 67
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
+ ++PLH AAKNG + KLLL++GA A G P+D+ + ++
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDD----ESMKS 123
Query: 137 LLL 139
LLL
Sbjct: 124 LLL 126
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
N GET LH+A+ G + + LL +G+ K + G TPL H + G K+ ELLL H
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPL-HEACNHGHLKVVELLLQH 65
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 16/145 (11%)
Query: 21 AQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80
A+ D+ A +LL+ +++R M +T LH++A Y+ E L+E E
Sbjct: 11 AKENDVQALSKLLKFEGCEVHQRG-AMGETALHIAALYDNLEAAMVLMEAAPELVFEPMT 69
Query: 81 QNMY-GETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-------------EGKTPLDHLS 126
+Y G+T LH+A N + LLA GA + A+A G+ PL +
Sbjct: 70 SELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLS-FA 128
Query: 127 NGPGSAKLRELLLWHSEEQRKRRAL 151
GS ++ LL+ H + R + +L
Sbjct: 129 ACVGSEEIVRLLIEHGADIRAQDSL 153
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 19/141 (13%)
Query: 16 TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMA-----QTPLHVSAGYNKAEIVKSLLEW 70
+H A +L A L+ P L+ E P+ + QT LH++ +V++LL
Sbjct: 40 ALHIAALYDNLEAAMVLMEAAPELVFE--PMTSELYEGQTALHIAVINQNVNLVRALLAR 97
Query: 71 PGN-------DKVELEAQNM--YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTP 121
+ N+ YGE PL AA G E +LL+ HGA I A+ + G T
Sbjct: 98 GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV 157
Query: 122 LDHLSNGPG---SAKLRELLL 139
L L P + ++ LLL
Sbjct: 158 LHILILQPNKTFACQMYNLLL 178
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 105
++PL ++A N + + LL++ G E+ + GET LH+AA EAA +L+
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEG---CEVHQRGAMGETALHIAALYDNLEAAMVLM 57
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H A+ G+L ++ R +N +N + T L+ + +IV+ L P +
Sbjct: 77 LHEAAKRGNL-SWLRECLDNRVGVNGLDKA-GSTALYWACHGGHKDIVEXLFTQP---NI 131
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRE 136
EL QN G+T LH AA G + +LLLA GA + + E K D +N ++ L++
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLLKK 191
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 31/152 (20%)
Query: 16 TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND- 74
+IH A G+L + LR+ +L+N+ + TPL ++ + + E V+ LLEW +
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDE-RGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 75 ----------------------------KVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 106
V++ + G TPL A + + + LLA
Sbjct: 64 ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123
Query: 107 HGAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138
GA + +A+ G TP+D L+ G K+++++
Sbjct: 124 RGADLTTEADSGYTPMD-LAVALGYRKVQQVI 154
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 12/115 (10%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R ++ + + LN +N + QTPLH++ N+ EI ++LL G D E ++ G TPLH
Sbjct: 29 RQVKGDLAFLNFQNN-LQQTPLHLAVITNQPEIAEALL-GAGCDP---ELRDFRGNTPLH 83
Query: 91 MAAKNGCNEAAKLLLAHG------AFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
+A + GC + +L + ++A G T L HL++ G + ELL+
Sbjct: 84 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL-HLASIHGYLGIVELLV 137
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 52 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI 111
LH++ + + + ++ D L QN +TPLH+A E A+ LL G
Sbjct: 12 LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 71
Query: 112 EAKANEGKTPLDHLS 126
E + G TPL HL+
Sbjct: 72 ELRDFRGNTPL-HLA 85
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 17 IHGCAQSGDLLAFQRLL-RE--NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN 73
+ G A GD+ +RLL RE +P LN +T L V + I LL+ +
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNR----FGKTALQVMM-FGSTAIALELLKQGAS 60
Query: 74 DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAK 133
V Q+ G +P+H AA+ G + K+L+ HGA + G P+ HL+ G
Sbjct: 61 PNV----QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI-HLAVQEGHTA 115
Query: 134 LRELLLWHSEEQRK 147
+ L S+ R+
Sbjct: 116 VVSFLAAESDLHRR 129
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 32 LLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91
+ + SL N+ + +T LH++A Y++++ K LLE + + Q+ G TPLH
Sbjct: 7 FIYQGASLHNQTDRT-GETALHLAARYSRSDAAKRLLEASADAXI----QDNMGRTPLHA 61
Query: 92 AAKNGCNEAAKLLLAHGAF-IEAKANEGKTPL 122
A ++LL + A ++A+ ++G TPL
Sbjct: 62 AVSADAQGVFQILLRNRATDLDARMHDGTTPL 93
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 79 EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLD 123
+ QN ETPL +AA+ G E AK+LL H A + + + P D
Sbjct: 149 DMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD 193
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 10/137 (7%)
Query: 5 QDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIV 64
QD R+ A + AQ FQ LLR + L+ R TPL ++A +
Sbjct: 51 QDNMGRTPLHAAVSADAQG----VFQILLRNRATDLDARMHD-GTTPLILAARL----AL 101
Query: 65 KSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDH 124
+ +LE N ++ A + G++ LH AA +AA +LL +GA + + N+ +TPL
Sbjct: 102 EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPL-F 160
Query: 125 LSNGPGSAKLRELLLWH 141
L+ GS + ++LL H
Sbjct: 161 LAAREGSYETAKVLLDH 177
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 17 IHGCAQSGDLLAFQRLL-RE--NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN 73
+ G A GD+ +RLL RE +P LN +T L V + I LL+ +
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNR----FGKTALQVMM-FGSTAIALELLKQGAS 66
Query: 74 DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAK 133
V Q+ G +P+H AA+ G + K+L+ HGA + G P+ HL+ G
Sbjct: 67 PNV----QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI-HLAVQEGHTA 121
Query: 134 LRELLLWHSEEQRK 147
+ L S+ R+
Sbjct: 122 VVSFLAAESDLHRR 135
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 12/115 (10%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R ++ + + LN +N + QTPLH++ N+ EI ++LL G D E ++ G TPLH
Sbjct: 26 RQVKGDLAFLNFQNN-LQQTPLHLAVITNQPEIAEALL-GAGCDP---ELRDFRGNTPLH 80
Query: 91 MAAKNGCNEAAKLLLAHG------AFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
+A + GC + +L + ++A G T L HL++ G + ELL+
Sbjct: 81 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL-HLASIHGYLGIVELLV 134
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 62/161 (38%), Gaps = 2/161 (1%)
Query: 52 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI 111
LH++ + + + ++ D L QN +TPLH+A E A+ LL G
Sbjct: 9 LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 68
Query: 112 EAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNI 171
E + G TPL HL+ G +L L+A + L + +
Sbjct: 69 ELRDFRGNTPL-HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS-IHGY 126
Query: 172 VGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFL 212
+G+ EL + L R AL L V + P ++ L
Sbjct: 127 LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 167
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 32 LLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91
+ + SL N+ + A T LH++A Y++++ K LLE + + Q+ G TPLH
Sbjct: 42 FIYQGASLHNQTDRTGA-TALHLAAAYSRSDAAKRLLEASADANI----QDNMGRTPLHA 96
Query: 92 AAKNGCNEAAKLLLAHGAF-IEAKANEGKTPL 122
A ++L+ + A ++A+ ++G TPL
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPL 128
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
QN ETPL +AA+ G E AK+LL H A
Sbjct: 186 QNNREETPLFLAAREGSYETAKVLLDHFA 214
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 10/137 (7%)
Query: 5 QDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIV 64
QD R+ A + AQ FQ L+R + L+ R TPL ++A V
Sbjct: 86 QDNMGRTPLHAAVSADAQG----VFQILIRNRATDLDARMHD-GTTPLILAARL----AV 136
Query: 65 KSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDH 124
+ +LE N ++ A + G++ LH AA +AA +LL +GA + + N +TPL
Sbjct: 137 EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPL-F 195
Query: 125 LSNGPGSAKLRELLLWH 141
L+ GS + ++LL H
Sbjct: 196 LAAREGSYETAKVLLDH 212
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 31/152 (20%)
Query: 16 TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND- 74
+IH A G+L + LR+ +L+N+ + TPL ++ + + E V+ LLEW +
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDE-RGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 75 ----------------------------KVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 106
V++ + G TPL A + + LLA
Sbjct: 64 ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLA 123
Query: 107 HGAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138
GA + +A+ G TP+D L+ G K+++++
Sbjct: 124 RGADLTTEADSGYTPMD-LAVALGYRKVQQVI 154
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+T LH++A Y++++ K LLE + + Q+ G TPLH A ++L+ +
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 109 AF-IEAKANEGKTPL 122
A ++A+ ++G TPL
Sbjct: 82 ATDLDARMHDGTTPL 96
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122
GET LH+AA+ ++AAK LL A + N G+TPL
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL 62
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 79 EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLD 123
+ QN ETPL +AA+ G E AK+LL H A + + + P D
Sbjct: 152 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD 196
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 10/137 (7%)
Query: 5 QDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIV 64
QD R+ A + AQ FQ L+R + L+ R TPL ++A V
Sbjct: 54 QDNMGRTPLHAAVSADAQG----VFQILIRNRATDLDARMHD-GTTPLILAARL----AV 104
Query: 65 KSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDH 124
+ +LE N ++ A + G++ LH AA +AA +LL +GA + + N +TPL
Sbjct: 105 EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPL-F 163
Query: 125 LSNGPGSAKLRELLLWH 141
L+ GS + ++LL H
Sbjct: 164 LAAREGSYETAKVLLDH 180
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TPLHV+ + AE+V+ LL G D + E G TPLH+A + +LLL G
Sbjct: 159 HTPLHVAVIHKDAEMVR-LLRDAGADLNKPEP--TCGRTPLHLAVEAQAASVLELLLKAG 215
Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLR 135
A A+ G+TPL GSA LR
Sbjct: 216 ADPTARMYGGRTPL-------GSALLR 235
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY-GETPL 89
RLLR+ + LN+ P +TPLH++ A +++ LL+ G D MY G TPL
Sbjct: 175 RLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPT----ARMYGGRTPL 229
Query: 90 HMAAKNGCNEAAKLLLAHGA 109
A A+LL AHGA
Sbjct: 230 GSALLRPNPILARLLRAHGA 249
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 75 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI-EAKANEGKTPLDHLSNGPGSAK 133
+++LEA+N G TPLH+A + E +LL GA + + + G+TPL HL+ +A
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL-HLAVEAQAAS 206
Query: 134 LRELLL 139
+ ELLL
Sbjct: 207 VLELLL 212
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TPLHV+ + AE+V+ LL G D + E G TPLH+A + +LLL G
Sbjct: 159 HTPLHVAVIHKDAEMVR-LLRDAGADLNKPEP--TCGRTPLHLAVEAQAASVLELLLKAG 215
Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLR 135
A A+ G+TPL GSA LR
Sbjct: 216 ADPTARMYGGRTPL-------GSALLR 235
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY-GETPL 89
RLLR+ + LN+ P +TPLH++ A +++ LL+ G D MY G TPL
Sbjct: 175 RLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPT----ARMYGGRTPL 229
Query: 90 HMAAKNGCNEAAKLLLAHGA 109
A A+LL AHGA
Sbjct: 230 GSALLRPNPILARLLRAHGA 249
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 75 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI-EAKANEGKTPLDHLSNGPGSAK 133
+++LEA+N G TPLH+A + E +LL GA + + + G+TPL HL+ +A
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL-HLAVEAQAAS 206
Query: 134 LRELLL 139
+ ELLL
Sbjct: 207 VLELLL 212
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 32 LLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91
+ + SL N+ + +T LH++A Y++++ K LLE + + Q+ G TPLH
Sbjct: 42 FIYQGASLHNQTDRT-GETALHLAARYSRSDAAKRLLEASADANI----QDNMGRTPLHA 96
Query: 92 AAKNGCNEAAKLLLAHGAF-IEAKANEGKTPL 122
A ++L+ + A ++A+ ++G TPL
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPL 128
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLD 123
QN ETPL +AA+ G E AK+LL H A + + + P D
Sbjct: 186 QNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD 228
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 10/137 (7%)
Query: 5 QDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIV 64
QD R+ A + AQ FQ L+R + L+ R TPL ++A V
Sbjct: 86 QDNMGRTPLHAAVSADAQG----VFQILIRNRATDLDARMHD-GTTPLILAARL----AV 136
Query: 65 KSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDH 124
+ +LE N ++ A + G++ LH AA +AA +LL +GA + + N +TPL
Sbjct: 137 EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPL-F 195
Query: 125 LSNGPGSAKLRELLLWH 141
L+ GS + ++LL H
Sbjct: 196 LAAREGSYETAKVLLDH 212
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 32 LLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91
+ + SL N+ + +T LH++A Y++++ K LLE + + Q+ G TPLH
Sbjct: 43 FIYQGASLHNQTDRT-GETALHLAARYSRSDAAKRLLEASADANI----QDNMGRTPLHA 97
Query: 92 AAKNGCNEAAKLLLAHGAF-IEAKANEGKTPL 122
A ++L+ + A ++A+ ++G TPL
Sbjct: 98 AVSADAQGVFQILIRNRATDLDARMHDGTTPL 129
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 79 EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLD 123
+ QN ETPL +AA+ G E AK+LL H A + + + P D
Sbjct: 185 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD 229
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 10/137 (7%)
Query: 5 QDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIV 64
QD R+ A + AQ FQ L+R + L+ R TPL ++A V
Sbjct: 87 QDNMGRTPLHAAVSADAQG----VFQILIRNRATDLDARMHD-GTTPLILAARL----AV 137
Query: 65 KSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDH 124
+ +LE N ++ A + G++ LH AA +AA +LL +GA + + N +TPL
Sbjct: 138 EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPL-F 196
Query: 125 LSNGPGSAKLRELLLWH 141
L+ GS + ++LL H
Sbjct: 197 LAAREGSYETAKVLLDH 213
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 52 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI 111
LH +A +I + LL K +L A N++G++PLH+AA+ + L L+ + +
Sbjct: 148 LHWAAFSGCVDIAEILLA----AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203
Query: 112 EAKANEGKTPL 122
K EG+TPL
Sbjct: 204 TLKNKEGETPL 214
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
++PLH +A +I L++ N E Q TPL AA+N EA K L+ G
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ----RTPLMEAAENNHLEAVKYLIKAG 67
Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
A ++ K EG T L HL+ G ++ + LL
Sbjct: 68 ALVDPKDAEGSTCL-HLAAKKGHYEVVQYLL 97
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
T LH++A E+V+ LL N ++++ Q+ G TP+ A + + KLLL+ G+
Sbjct: 79 TCLHLAAKKGHYEVVQYLL---SNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS 135
Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
I + NE L H + G + E+LL
Sbjct: 136 DINIRDNEENICL-HWAAFSGCVDIAEILL 164
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPG 72
K + +H A++G + L++ ++ + +TPL +A N E VK L++
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANI--DTCSEDQRTPLMEAAENNHLEAVKYLIK--- 65
Query: 73 NDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF-IEAKANEGKTPL 122
++ ++ G T LH+AAK G E + LL++G + + + G TP+
Sbjct: 66 -AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 3 KNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAE 62
+QD R+ +H + + FQ LLR + LN R TPL ++A
Sbjct: 78 NSQDNTGRT----PLHAAVAADAMGVFQILLRNRATNLNARMHD-GTTPLILAARLAIEG 132
Query: 63 IVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122
+V+ L+ ++ A + G+T LH AA EA +LL H A +A+ ++ +TPL
Sbjct: 133 MVEDLITA----DADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL 188
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+T LH +A N E V LL N +AQ+ ETPL +AA+ G EA+K LL +
Sbjct: 152 KTALHWAAAVNNTEAVNILLMHHAN----RDAQDDKDETPLFLAAREGSYEASKALLDNF 207
Query: 109 AFIEAKANEGKTPLD 123
A E + + P D
Sbjct: 208 ANREITDHMDRLPRD 222
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+TPLH + + + + LL N L A+ G TPL +AA+ + L+
Sbjct: 85 RTPLHAAVAADAMGVFQILLR---NRATNLNARMHDGTTPLILAARLAIEGMVEDLITAD 141
Query: 109 AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141
A I A N GKT L H + + + +LL H
Sbjct: 142 ADINAADNSGKTAL-HWAAAVNNTEAVNILLMH 173
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVAR 224
++ G+HE K+++R++ + ER L++GA+ P LG PG GKT++A+
Sbjct: 5 FKDVAGMHEAKLEVREFVDYLKSPERF----LQLGAKVPKGALLLGPPGCGKTLLAK 57
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 76 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLR 135
++ A++ G TPLH+AA+ G E ++LL GA + A+ GKT D +S G+ L
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFD-ISIDNGNEDLA 84
Query: 136 ELL 138
E+L
Sbjct: 85 EIL 87
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
R+L N + +N ++ TPLH++A EIV+ LL+ ++ AQ+ +G+T
Sbjct: 19 RILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAG----ADVNAQDKFGKTAFD 73
Query: 91 MAAKNGCNEAAKLL 104
++ NG + A++L
Sbjct: 74 ISIDNGNEDLAEIL 87
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
AA+ G ++ ++L+A+GA + AK +G TPL HL+ G ++ E+LL
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPL-HLAAREGHLEIVEVLL 55
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
TPL+++ + VK LLE G D + + Q ++PLH A+ E A LL+ GA
Sbjct: 136 TPLYLACENQQRACVKKLLE-SGADVNQGKGQ----DSPLHAVARTASEELACLLMDFGA 190
Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
+AK EGK P++ + P + L +L L
Sbjct: 191 DTQAKNAEGKRPVELV---PPESPLAQLFL 217
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 17 IHGCAQSGDLLAFQRLL-RE--NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN 73
+ G A GD+ +RLL RE +P LN +T L V + + LL+ +
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNR----FGKTALQVMM-FGSPAVALELLKQGAS 66
Query: 74 DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAK 133
V Q+ G +P+H AA+ G + K+L+ HGA + A + G P+ HL+ G +
Sbjct: 67 PNV----QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPI-HLAIREGHSS 121
Query: 134 LRELLLWHSE 143
+ L S+
Sbjct: 122 VVSFLAPESD 131
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 17 IHGCAQSGDLLAFQRLL-RE--NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN 73
+ G A GD+ +RLL RE +P LN +T L V + + LL+ +
Sbjct: 14 LSGAAARGDVQEVRRLLHRELVHPDALNR----FGKTALQVMM-FGSPAVALELLKQGAS 68
Query: 74 DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAK 133
V Q+ G +P+H AA+ G + K+L+ HGA + A + G P+ HL+ G +
Sbjct: 69 PNV----QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPI-HLAIREGHSS 123
Query: 134 LRELLLWHSE 143
+ L S+
Sbjct: 124 VVSFLAPESD 133
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+T LH +A + IVK L+ G++K + Q+ G+TP+ +AA+ G E L+ G
Sbjct: 280 RTALHYAAQVSNXPIVKYLVGEKGSNK---DKQDEDGKTPIXLAAQEGRIEVVXYLIQQG 336
Query: 109 AFIEA 113
A +EA
Sbjct: 337 ASVEA 341
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 24 GDLLAFQRLLRE--NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81
G+ QR++ E +PSL N+ T LH + EIVK L+++ V + A
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDE----GITALHNAVCAGHTEIVKFLVQF----GVNVNAA 99
Query: 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEA 113
+ G TPLH AA + K L+ GA + A
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 24 GDLLAFQRLLRE--NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81
G+ QR++ E +PSL N+ T LH + EIVK L+++ V + A
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDE----GITALHNAVCAGHTEIVKFLVQF----GVNVNAA 99
Query: 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEA 113
+ G TPLH AA + K L+ GA + A
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
TPL+++ + VK LLE G D + + Q ++PLH + E A LL+ GA
Sbjct: 192 TPLYLACENQQRACVKKLLE-SGADVNQGKGQ----DSPLHAVVRTASEELACLLMDFGA 246
Query: 110 FIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
+AK EGK P++ + P + L +L L
Sbjct: 247 DTQAKNAEGKRPVELV---PPESPLAQLFL 273
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 14/139 (10%)
Query: 34 RENPSLLNERNPVMAQ-----TPLHVSAGYNKAEIVKSLLE--WPGNDKVELEAQNMYGE 86
R+ P + NP+M +P+H +A + +++L+ W N + A ++
Sbjct: 40 RDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNI---ITADHV--- 93
Query: 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 146
+PLH A G K+LL HGA + + TPL + GS LLL H +
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS-GSWDCVNLLLQHGASVQ 152
Query: 147 KRRALEACSETKAKMDELE 165
L + A+ +E
Sbjct: 153 PESDLASPIHEAARRGHVE 171
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 17/131 (12%)
Query: 195 KALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFV 254
KALGL P + G PG GKT++A+ + + I V+ +L+ +V
Sbjct: 37 KALGLVT----PAGVLLAGPPGCGKTLLAKAVANESGLNFI-------SVKGPELLNMYV 85
Query: 255 GHTGPKTRR---RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV-- 309
G + R+ R K + ++F DE L P + + + + ++++ MDG +
Sbjct: 86 GESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145
Query: 310 -VVIFAGYSEP 319
V I A + P
Sbjct: 146 QVFIMAATNRP 156
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 35/173 (20%)
Query: 160 KMDELENE-LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTG 218
KMD+ E S+I GL Q+++ + + L L ++G + P + G PGTG
Sbjct: 172 KMDKSPTESYSDIGGLES---QIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTG 228
Query: 219 KTMVARILGR-----LLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEG--- 270
KT++A+ + L +VG ++L+ +++G GP+ R+I + G
Sbjct: 229 KTLLAKAVANQTSATFLRIVG------------SELIQKYLGD-GPRLCRQIFKVAGENA 275
Query: 271 -GILFVDEAYRLIPMQKADDKDYGIEALE----EIMSVMDG----GKVVVIFA 314
I+F+DE I ++ D G ++ E+++ +DG G V VI A
Sbjct: 276 PSIVFIDE-IDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMA 327
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 60/156 (38%), Gaps = 20/156 (12%)
Query: 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 266
PH+ F G PG GKT A L R L+ G E+ +D G V K R K
Sbjct: 47 PHLLFAGPPGVGKTTAALALARELF--GENWRHNFLELNASDERGINVIREKVKEFARTK 104
Query: 267 EAEGG---ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV 323
G I+F+DEA L Q A +AL M + ++ YS ++
Sbjct: 105 PIGGASFKIIFLDEADAL--TQDAQ------QALRRTMEMFSSNVRFILSCNYS---SKI 153
Query: 324 IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 359
I + C F F E++AK L N+
Sbjct: 154 IEPIQSRC----AIFRFRPLRDEDIAKRLRYIAENE 185
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 266
PH+ F G PGTGKT L R +Y G ++ V E+ +D G V R +IK
Sbjct: 47 PHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGIDV------VRNQIK 98
Query: 267 EAEGGILFVDEAYRLIPMQKAD 288
+ + ++LI + +AD
Sbjct: 99 DFASTRQIFSKGFKLIILDEAD 120
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 20/122 (16%)
Query: 162 DELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTM 221
D+++ +++ G E K ++ + + + R + LG K+ P + +G PGTGKT+
Sbjct: 5 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKI----PKGVLMVGPPGTGKTL 60
Query: 222 VARIL---GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTR---RRIKEAEGGILFV 275
+A+ + ++ + + +D V FVG + R + K+A I+F+
Sbjct: 61 LAKAIAGEAKVPFFT----------ISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFI 110
Query: 276 DE 277
DE
Sbjct: 111 DE 112
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 200 KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGP 259
++GAR P + +G PGTGKT++AR + + + +D V FVG
Sbjct: 43 RIGARMPKGILLVGPPGTGKTLLARAVAGEANV-------PFFHISGSDFVELFVGVGAA 95
Query: 260 KTRRRIKEAEG---GILFVDE 277
+ R +A+ I+F+DE
Sbjct: 96 RVRDLFAQAKAHAPCIVFIDE 116
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 33 LRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92
L EN L +++ + T L + N+ I + LL N + ++ G+TPL +
Sbjct: 54 LVENFDKLEDKD-IEGSTALIWAVKNNRLGIAEKLLSKGSN----VNTKDFSGKTPLMWS 108
Query: 93 AKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138
G +E + LL HGA + + EG+TPL S S +++LL
Sbjct: 109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLL 154
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 32 LLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91
L E+ + +N+RN + +TPL V++ Y ++EIVK LLE ++ A+++ G T
Sbjct: 119 FLLEHGANVNDRN-LEGETPLIVASKYGRSEIVKKLLELGA----DISARDLTGLTAEAS 173
Query: 92 AAKNGCNEAAKLL 104
A G E K+
Sbjct: 174 ARIFGRQEVIKIF 186
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 34 RENPSLLNERNPVMAQTPLHVSAGYNK-AEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92
+E P+ + R + L + A N+ ++V+ LLE N + E G TPLH A
Sbjct: 10 QEGPTSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG---GWTPLHNA 66
Query: 93 AKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139
+ + +LLL HGA + G TP L+ GS KL +L L
Sbjct: 67 VQMSREDIVELLLRHGADPVLRKKNGATPF-ILAAIAGSVKLLKLFL 112
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 52 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+HV+A + + V+ L+E V QN +G T LH+A K GC + AK L + G
Sbjct: 24 IHVAARKGQTDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
Query: 33 LRENPSLLNERNPVMAQTPLHV---SAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89
L E L N P +T LH+ S IV L++ GN L+ Q G T L
Sbjct: 156 LTEKIPLANGHEP--DETALHLAVRSVDRTSLHIVDFLVQNSGN----LDKQTGKGSTAL 209
Query: 90 HMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLD 123
H E KLLL A IE G+TPLD
Sbjct: 210 HYCCLTDNAECLKLLLRGKASIEIANESGETPLD 243
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
RLL E + L+ R+ T LH++AGY + E+V++L+E G D +E ++ G T L
Sbjct: 94 RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE-LGAD---IEVEDERGLTALE 149
Query: 91 MA 92
+A
Sbjct: 150 LA 151
>pdb|1Z7A|A Chain A, Crystal Structure Of Probable Polysaccharide Deacetylase
From Pseudomonas Aeruginosa Pao1
pdb|1Z7A|B Chain B, Crystal Structure Of Probable Polysaccharide Deacetylase
From Pseudomonas Aeruginosa Pao1
pdb|1Z7A|C Chain C, Crystal Structure Of Probable Polysaccharide Deacetylase
From Pseudomonas Aeruginosa Pao1
pdb|1Z7A|D Chain D, Crystal Structure Of Probable Polysaccharide Deacetylase
From Pseudomonas Aeruginosa Pao1
pdb|1Z7A|E Chain E, Crystal Structure Of Probable Polysaccharide Deacetylase
From Pseudomonas Aeruginosa Pao1
pdb|1Z7A|F Chain F, Crystal Structure Of Probable Polysaccharide Deacetylase
From Pseudomonas Aeruginosa Pao1
pdb|1Z7A|G Chain G, Crystal Structure Of Probable Polysaccharide Deacetylase
From Pseudomonas Aeruginosa Pao1
pdb|1Z7A|H Chain H, Crystal Structure Of Probable Polysaccharide Deacetylase
From Pseudomonas Aeruginosa Pao1
Length = 308
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 241 VTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAY 279
+TE+ VG + G TGP TRR + E EGG L+ + Y
Sbjct: 152 LTELTGQRPVGWYTGRTGPNTRRLVXE-EGGFLYDSDTY 189
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 248
PHM F G PGTGKT L + LY ++ + R+ E+ +D
Sbjct: 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASD 99
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG-EFVGHTGPKTRRR- 264
PH+ F G PGTGKT A L R L+ G D E+ +D G + V H + R
Sbjct: 39 PHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96
Query: 265 -IKEAEGGILFVDEA 278
I A I+F+DEA
Sbjct: 97 PIGGAPFKIIFLDEA 111
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG-EFVGHTGPKTRRR- 264
PH+ F G PGTGKT A L R L+ G D E+ +D G + V H + R
Sbjct: 39 PHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96
Query: 265 -IKEAEGGILFVDEA 278
I A I+F+DEA
Sbjct: 97 PIGGAPFKIIFLDEA 111
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 200 KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGP 259
++GAR P + +G PGTG T++AR + + + +D V FVG
Sbjct: 43 RIGARMPKGILLVGPPGTGATLLARAVAGEANV-------PFFHISGSDFVELFVGVGAA 95
Query: 260 KTRRRIKEAEG---GILFVDE 277
+ R +A+ I+F+DE
Sbjct: 96 RVRDLFAQAKAHAPCIVFIDE 116
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 200 KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGP 259
++G P + G PGTGKTM+ + + I V ++ V +++G GP
Sbjct: 200 QIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFI-------RVNGSEFVHKYLGE-GP 251
Query: 260 KTRRRI----KEAEGGILFVDE----AYRLIPMQKADDKDYGIEALEEIMSVMDG 306
+ R + +E I+F+DE A + Q D++ L E+++ MDG
Sbjct: 252 RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQ-RILIELLTQMDG 305
>pdb|1OJL|A Chain A, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|B Chain B, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|C Chain C, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|D Chain D, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|E Chain E, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|F Chain F, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
Length = 304
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 213 GNPGTGKTMVARILGRLLYMVG-ILPTDRVTEVQRTDLVGEFVGH-----TGPKTRR--R 264
G+ GTGK +VAR L L T + + L E GH TG RR R
Sbjct: 32 GDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGR 91
Query: 265 IKEAEGGILFVDEAYRLIPMQK 286
EA+GG LF+DE + P+ +
Sbjct: 92 FVEADGGTLFLDEIGDISPLMQ 113
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
RLL E + L+ R+ T LH++AGY + E+V++L+E G D +E ++ G T L
Sbjct: 93 RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE-LGAD---IEVEDERGLTALE 148
Query: 91 MA 92
+A
Sbjct: 149 LA 150
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 4 NQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEI 63
N D + R+ A IH A++G L Q LL + E N PLH++A +
Sbjct: 62 NPDLKDRTGF-AVIHDAARAGQLDTLQTLLEFQADVNIEDNE--GNLPLHLAAKEGHLRV 118
Query: 64 VKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
V+ L++ ++ + +N G+T +A G NE L+ A+GA
Sbjct: 119 VEFLVKHTASN---VGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 52 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF- 110
+H +A + + +++LLE+ + +E + G PLH+AAK G + L+ H A
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADVNIE----DNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 111 IEAKANEGKTPLD 123
+ + ++G T D
Sbjct: 130 VGHRNHKGDTACD 142
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 4 NQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEI 63
N D + R+ A IH A++G L Q LL + E N PLH++A +
Sbjct: 62 NPDLKDRTGF-AVIHDAARAGFLDTLQTLLENQADVNIEDNE--GNLPLHLAAKEGHLRV 118
Query: 64 VKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
V+ L++ ++ + +N G+T +A G NE L+ A+GA
Sbjct: 119 VEFLVKHTASN---VGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 4 NQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEI 63
N D + R+ A IH A++G L Q LL + E N PLH++A +
Sbjct: 62 NPDLKDRTGN-AVIHDAARAGFLDTLQTLLEFQADVNIEDNE--GNLPLHLAAKEGHLRV 118
Query: 64 VKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
V+ L++ ++ + +N G+T +A G NE L+ A+GA
Sbjct: 119 VEFLVKHTASN---VGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 62 EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTP 121
++V+ LLE N + E G TPLH A + + +LLL HGA + G TP
Sbjct: 19 DLVQQLLEGGANVNFQEEEG---GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATP 75
Query: 122 LDHLSNGPGSAKLRELLL 139
L+ GS KL +L L
Sbjct: 76 F-LLAAIAGSVKLLKLFL 92
>pdb|1R4P|A Chain A, Shiga Toxin Type 2
pdb|2GA4|A Chain A, Stx2 With Adenine
Length = 297
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 1 MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK 60
M+ + + +R A A + + + L F+++ RE L+E PV TP V N
Sbjct: 143 MEFSGNTMTRDASRAVLRFVTVTAEALRFRQIQREFRQALSETAPVYTMTPGDVDLTLNW 202
Query: 61 AEIVKSLLEWPGNDKVEL 78
I L E+ G D V +
Sbjct: 203 GRISNVLPEYRGEDGVRV 220
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 4 NQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEI 63
N D + R+ A IH A++G L Q LL + E N PLH++A +
Sbjct: 62 NPDLKDRTGF-AVIHDAARAGFLDTLQTLLEFQADVNIEDNE--GNLPLHLAAKEGHLRV 118
Query: 64 VKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
V+ L++ ++ + +N G+T +A G NE L+ A+GA
Sbjct: 119 VEFLVKHTASN---VGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 173 GLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 232
G+ L Q+R+ + + L + + +VG + P + G PGTGKT++A+ + +
Sbjct: 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA 241
Query: 233 VGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRI---KEAEGGILFVDEA 278
I + +V +++G + R KE E I+F+DE
Sbjct: 242 NFIFSP-------ASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEV 283
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 200 KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGP 259
KVG P + G PGTGKT++A+ V V ++LV +F+G
Sbjct: 45 KVGIEPPKGILLYGPPGTGKTLLAK-------AVATETNATFIRVVGSELVKKFIGEGAS 97
Query: 260 KTR---RRIKEAEGGILFVDE 277
+ + KE I+F+DE
Sbjct: 98 LVKDIFKLAKEKAPSIIFIDE 118
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 79 EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLD 123
+ QN ETPL +AA+ G E AK+LL H A + + + P D
Sbjct: 75 DMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD 119
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 4 NQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEI 63
N D + R+ A IH A++G L Q LL + E N PLH++A +
Sbjct: 62 NPDLKDRTGF-AVIHDAARAGFLDTLQTLLEFQADVNIEDNE--GNLPLHLAAKEGHLRV 118
Query: 64 VKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
V+ L++ ++ + +N G+T +A G NE L+ A+GA
Sbjct: 119 VEFLVKHTASN---VGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|2CWX|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CWX|E Chain E, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CXE|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|B Chain B, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|C Chain C, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|D Chain D, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2D69|A Chain A, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|B Chain B, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|D Chain D, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|E Chain E, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
Length = 430
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 177 LKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI 235
+ I + W+ + E + LGL + A R H AF NP G TM+A L + M+G+
Sbjct: 251 IDIVVAGWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPRHGITMLA--LAKAARMIGV 307
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 28/155 (18%)
Query: 209 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA 268
M G PGTGKT +A ++ R +V+R V V R +
Sbjct: 53 MILWGPPGTGKTTLAEVIARYAN----------ADVERISAVTSGVKEIREAIERARQNR 102
Query: 269 EGG---ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIA 325
G ILFVDE +R Q+ + + ++ G + I A P +
Sbjct: 103 NAGRRTILFVDEVHRFNKSQQ-----------DAFLPHIEDGTITFIGATTENPSFEL-- 149
Query: 326 SNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQT 360
N R + + ++E++ ++L M ++T
Sbjct: 150 -NSALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKT 182
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 40 LNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNE 99
+N + QT L ++ + + ++VK+LL + ++ Q+ G T L A ++G E
Sbjct: 175 INAKASQAGQTALMLAVSHGRVDVVKALLAC----EADVNVQDDDGSTALMCACEHGHKE 230
Query: 100 AAKLLLA 106
A LLLA
Sbjct: 231 IAGLLLA 237
>pdb|2IYQ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And Adp
pdb|2IYR|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYR|B Chain B, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYS|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate, Open Lid (Conf. A)
pdb|2IYT|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Unliganded State, Open Lid (conf. A)
pdb|2IYU|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. A)
pdb|2IYV|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. B)
pdb|2IYW|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Mgatp, Open Lid (Conf. B)
pdb|2IYX|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And So4
pdb|2IYY|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And So4
pdb|2IYZ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And Adp
Length = 184
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 266
P +G PG+GK+ + R L + L VG+L TD E + + + G + RRI+
Sbjct: 3 PKAVLVGLPGSGKSTIGRRLAKALG-VGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIE 61
Query: 267 E 267
E
Sbjct: 62 E 62
>pdb|1L4U|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Pt(Ii) At 1.8
Angstrom Resolution
pdb|1L4Y|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp At 2.0 Angstrom
Resolution
pdb|1U8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate And Adp At 2.15
Angstrom Resolution
pdb|1WE2|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Shikimic Acid
pdb|1ZYU|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate And Amppcp At 2.85
Angstrom Resolution
pdb|2G1J|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase At 2.0 Angstrom Resolution
pdb|2G1J|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase At 2.0 Angstrom Resolution
pdb|2G1K|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate At 1.75 Angstrom
Resolution
pdb|2DFN|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Shikimate At 1.9
Angstrons Of Resolution
pdb|2DFT|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|B Chain B, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|C Chain C, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|D Chain D, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|3BAF|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Amp-Pnp
Length = 176
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 266
P +G PG+GK+ + R L + L VG+L TD E + + + G + RRI+
Sbjct: 3 PKAVLVGLPGSGKSTIGRRLAKALG-VGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIE 61
Query: 267 E 267
E
Sbjct: 62 E 62
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 51 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF 110
PLH +A + EI++ LL G D + A + + TPL A G KLLL+ GA
Sbjct: 38 PLHYAADCGQLEILEFLL-LKGAD---INAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
Query: 111 IEAKANEGKTPLDHLSN 127
K +G T L+ N
Sbjct: 94 KTVKGPDGLTALEATDN 110
>pdb|3CL6|A Chain A, Crystal Structure Of Puue Allantoinase
pdb|3CL6|B Chain B, Crystal Structure Of Puue Allantoinase
pdb|3CL7|A Chain A, Crystal Structure Of Puue Allantoinase In Complex With
Hydantoin
pdb|3CL7|B Chain B, Crystal Structure Of Puue Allantoinase In Complex With
Hydantoin
pdb|3CL8|A Chain A, Crystal Structure Of Puue Allantoinase Complexed With Aca
pdb|3CL8|B Chain B, Crystal Structure Of Puue Allantoinase Complexed With Aca
Length = 308
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 241 VTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAY 279
+TE+ +G + G TGP TRR + E EGG L+ + Y
Sbjct: 152 LTELTGERPLGWYTGRTGPNTRRLVME-EGGFLYDCDTY 189
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 169 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVAR 224
S++ GL + Q+ + + ++L +R +G R P G PGTGKT++AR
Sbjct: 181 SDVGGLDK---QIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLAR 233
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 199 LKVGARRPPHMAFLGNPGTGKTMVARILGRLL 230
+K A + H+ +G PGTGK+M+ + + LL
Sbjct: 53 IKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 200 KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH--- 256
K+ + P + G GTGK +VAR++ R G + + E GH
Sbjct: 147 KIAKSKAP-VLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKG 205
Query: 257 --TGPKTRR--RIKEAEGGILFVDEAYRL 281
TG TR+ +++ A+ G LF+DE L
Sbjct: 206 AFTGALTRKKGKLELADQGTLFLDEVGEL 234
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 201 VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD-RVTEVQRTDLVGEFVGHTGP 259
+G +P + G PGTGKT++AR + TD + V +LV +++G G
Sbjct: 177 LGIAQPKGVILYGPPGTGKTLLARAVAH--------HTDCKFIRVSGAELVQKYIGE-GS 227
Query: 260 KTRRRI----KEAEGGILFVDE 277
+ R + +E I+F+DE
Sbjct: 228 RMVRELFVMAREHAPSIIFMDE 249
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 52 LHVSAGYNKA-EIVKSLLEWPGNDK--VELEAQNMY--GETPLHMAAKNGCNEAAKLLLA 106
L++S G N ++ + E GN + + +++Y G+T LH+A + C +LL+A
Sbjct: 53 LNLSNGRNDTIPVLLDIAERTGNMREFINSPFRDIYYRGQTALHIAIERRCKHYVELLVA 112
Query: 107 HGAFIEAKA 115
GA + A+A
Sbjct: 113 QGADVHAQA 121
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 15/122 (12%)
Query: 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRE--NPSLLNERNPVMAQTPLHVSAGYNKAEIV 64
RR+R + A +G+L Q+ ++E +PS NE T LH + IV
Sbjct: 15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEE----GITALHNAICGANYSIV 70
Query: 65 KSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA--AKLLLAHGAFIEAKA-NEGKTP 121
L+ N + + + +G TPLH AA CN+ L+ HGA I A ++G T
Sbjct: 71 DFLITAGAN----VNSPDSHGWTPLHCAAS--CNDTVICMALVQHGAAIFATTLSDGATA 124
Query: 122 LD 123
+
Sbjct: 125 FE 126
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 52 LHVSAGYNKA-EIVKSLLEWPGN--DKVELEAQNMY--GETPLHMAAKNGCNEAAKLLLA 106
L++SAG N I+ + E GN + + +++Y G+T LH+A + C +LL+
Sbjct: 55 LNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVE 114
Query: 107 HGAFIEAKA 115
GA + A+A
Sbjct: 115 KGADVHAQA 123
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 51 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF 110
PLH +A + EI++ LL G D + A + + TPL A G KLLL+ GA
Sbjct: 43 PLHYAADCGQLEILEFLL-LKGAD---INAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
Query: 111 IEAKANEGKTPLDHLSN 127
K +G T + N
Sbjct: 99 KTVKGPDGLTAFEATDN 115
>pdb|3S5U|A Chain A, Crystal Structure Of Crispr Associated Protein
pdb|3S5U|B Chain B, Crystal Structure Of Crispr Associated Protein
pdb|3S5U|C Chain C, Crystal Structure Of Crispr Associated Protein
pdb|3S5U|D Chain D, Crystal Structure Of Crispr Associated Protein
pdb|3S5U|E Chain E, Crystal Structure Of Crispr Associated Protein
pdb|3S5U|F Chain F, Crystal Structure Of Crispr Associated Protein
pdb|3S5U|G Chain G, Crystal Structure Of Crispr Associated Protein
pdb|3S5U|H Chain H, Crystal Structure Of Crispr Associated Protein
Length = 220
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 42/174 (24%)
Query: 33 LRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92
+R N SLL E + T L + + A +VK + ++ G ++++L G P +
Sbjct: 2 MRVNFSLLEEPIEIEKATFLTIKDVQSFAHLVKLIYQYDGENELKLFDAQQKGLKPTELF 61
Query: 93 AKNG-----CNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 147
N AA L L +G +EA+ N+
Sbjct: 62 VVTDILGYDVNSAATLKLIYGD-LEAQLNDK----------------------------- 91
Query: 148 RRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKV 201
E K+ +++L +S ++G L+ ++ G+++ E KALG+K+
Sbjct: 92 -------PEVKSMIEKLTGTISQLIGYELLEHEMDLEEDGIIVQELFKALGIKI 138
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm:
Functional Insights For An Aaa+ Hexameric Helicase
Length = 595
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 20/136 (14%)
Query: 208 HMAFLGNPGTGKT----MVARILGRLLYMVGILPTDR--VTEVQRTDLVGEFVGHTGPKT 261
H+ +G+PGT K+ ++R+ R +Y G T V R GE+ G
Sbjct: 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGA-- 386
Query: 262 RRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALE-EIMSVMDGGKVVVIFAGYSEPM 320
+ A+GGI +DE I + +D+ EA+E + +S+ G I A +
Sbjct: 387 ---LVLADGGIAVIDE----IDKMRDEDRVAIHEAMEQQTVSIAKAG----IVAKLNARA 435
Query: 321 KRVIASNEGFCRRVTK 336
+ A N F R +++
Sbjct: 436 AVIAAGNPKFGRYISE 451
>pdb|2ZAD|A Chain A, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
pdb|2ZAD|B Chain B, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
pdb|2ZAD|C Chain C, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
pdb|2ZAD|D Chain D, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
Length = 345
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 264 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVV 311
R+KEA+ +E +R+I ++ ++ IEA+EEI V G K +V
Sbjct: 143 RVKEAKK---IFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIV 187
>pdb|3DFY|A Chain A, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|B Chain B, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|C Chain C, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|D Chain D, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|E Chain E, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|F Chain F, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|G Chain G, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|H Chain H, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|I Chain I, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|J Chain J, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|K Chain K, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|L Chain L, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|M Chain M, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|N Chain N, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|O Chain O, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|P Chain P, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DEQ|A Chain A, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DEQ|B Chain B, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DEQ|C Chain C, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DEQ|D Chain D, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DER|A Chain A, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DER|B Chain B, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DER|C Chain C, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DER|D Chain D, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DES|A Chain A, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
pdb|3DES|B Chain B, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
pdb|3DES|C Chain C, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
pdb|3DES|D Chain D, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
Length = 345
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 264 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVV 311
R+KEA+ +E +R+I ++ ++ IEA+EEI V G K +V
Sbjct: 143 RVKEAKK---IFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIV 187
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE 267
H+ F G G GKT +A I+ + ++ T + +G
Sbjct: 57 HILFSGPAGLGKTTLANIISY----------EXSANIKTT--AAPXIEKSGDLAAILTNL 104
Query: 268 AEGGILFVDEAYRLIP 283
+EG ILF+DE +RL P
Sbjct: 105 SEGDILFIDEIHRLSP 120
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 203 ARRPP--HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPK 260
AR+ P H+ G PG GKT +A ++ + +G+ RVT + G+
Sbjct: 33 ARKEPLEHLLLFGPPGLGKTTLAHVIA---HELGV--NLRVTSGPAIEKPGDLAAILANS 87
Query: 261 TRRRIKEAEGGILFVDEAYRL 281
EG ILF+DE +RL
Sbjct: 88 LE------EGDILFIDEIHRL 102
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 10 RSAKPATIHGCAQSGDLLAF-QRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLL 68
+ A ++H A G++L R+ +EN ++N + TPL +A + + +V+ LL
Sbjct: 16 QGANSLSVHQLAAQGEMLYLATRIEQEN--VINHTDE-EGFTPLMWAAAHGQIAVVEFLL 72
Query: 69 EWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNG 128
+ + ++ + + E+ L +A G + K+LL G + G TPL + +G
Sbjct: 73 QNGADPQLLGKGR----ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG 128
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 22/157 (14%)
Query: 169 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR 228
S++ G + +LR+ + LL R A +G P + G PGTGKT+ AR +
Sbjct: 209 SDVGGCKDQIEKLREVVELPLLSPERFA---TLGIDPPKGILLYGPPGTGKTLCARAVAN 265
Query: 229 LLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQ 285
I V ++LV ++VG R + A + I+F DE +
Sbjct: 266 RTDATFI-------RVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDE-IDAVGGA 317
Query: 286 KADDKDYGIEALE----EIMSVMDG----GKVVVIFA 314
+ DD G ++ E+++ +DG G + V+FA
Sbjct: 318 RFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFA 354
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 203 ARRPP--HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPK 260
AR+ P H+ G PG GKT +A ++ + +G+ RVT + G+
Sbjct: 33 ARKEPLEHLLLFGPPGLGKTTLAHVIA---HELGV--NLRVTSGPAIEKPGDLAAILANS 87
Query: 261 TRRRIKEAEGGILFVDEAYRL 281
EG ILF+DE +RL
Sbjct: 88 LE------EGDILFIDEIHRL 102
>pdb|1FW8|A Chain A, Circularly Permuted Phosphoglycerate Kinase From Yeast:
Pgk P72
Length = 416
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 126 SNGPGSAKLRELLLWHSEEQRKRRA-LEACSETKAKMDELENELSNIVGLH--------- 175
++ PGS L E L +H EE+ R+ + +K + + +ELS++ ++
Sbjct: 38 ASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAH 97
Query: 176 -----ELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLG 213
+ L + A G LL++ K G + P +A LG
Sbjct: 98 RAHSSMVGFDLPQRAAGFLLEKELKYFGKALENPTRPFLAILG 140
>pdb|3PGK|A Chain A, The Structure Of Yeast Phosphoglycerate Kinase At 0.25 Nm
Resolution
Length = 416
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 126 SNGPGSAKLRELLLWHSEEQRKRRA-LEACSETKAKMDELENELSNIVGLH--------- 175
++ PGS L E L +H EE+ R+ + +K + + +ELS++ ++
Sbjct: 109 ASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAH 168
Query: 176 -----ELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLG 213
+ L + A G LL++ K G + P +A LG
Sbjct: 169 RAHSSMVGFDLPQRAAGFLLEKELKYFGKALENPTRPFLAILG 211
>pdb|1QPG|A Chain A, 3-Phosphoglycerate Kinase, Mutation R65q
Length = 415
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 126 SNGPGSAKLRELLLWHSEEQRKRRA-LEACSETKAKMDELENELSNIVGLH--------- 175
++ PGS L E L +H EE+ R+ + +K + + +ELS++ ++
Sbjct: 108 ASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAH 167
Query: 176 -----ELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLG 213
+ L + A G LL++ K G + P +A LG
Sbjct: 168 RAHSSMVGFDLPQRAAGFLLEKELKYFGKALENPTRPFLAILG 210
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
TPLH + +V L+++ G D ++ + G + +H+AA+ G L+A G
Sbjct: 78 TPLHWATRQGHLSMVVQLMKY-GADPSLIDGE---GCSCIHLAAQFGHTSIVAYLIAKGQ 133
Query: 110 FIEAKANEGKTPL 122
++ G TPL
Sbjct: 134 DVDMMDQNGMTPL 146
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 18/107 (16%)
Query: 203 ARRPP--HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPK 260
AR+ P H+ G PG GKT +A ++ + +G+ RVT + G+
Sbjct: 33 ARKEPLEHLLLFGPPGLGKTTLAHVIA---HELGV--NLRVTSGPAIEKPGDLAAILANS 87
Query: 261 TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEE-IMSVMDG 306
EG ILF+DE +RL ++A++ Y A+E+ +M ++ G
Sbjct: 88 LE------EGDILFIDEIHRL--SRQAEEHLY--PAMEDFVMDIVIG 124
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRR--- 264
++ +G G+GKT++A L RLL + + T + VGE V + K ++
Sbjct: 53 NILLIGPTGSGKTLLAETLARLLDVPFTMAD--ATTLTEAGYVGEDVENIIQKLLQKCDY 110
Query: 265 -IKEAEGGILFVDE 277
+++A+ GI+++D+
Sbjct: 111 DVQKAQRGIVYIDQ 124
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 16/84 (19%)
Query: 200 KVGARRPPHMAFLGNPGTGKTMVARIL---GRLLYMVGILPTDRVTEVQRTDLVGEFVGH 256
++GAR P + +G PG GKT +AR + R+ ++ +D V FVG
Sbjct: 58 EMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITA----------SGSDFVEMFVGV 107
Query: 257 TGPKTRRRIKEAE---GGILFVDE 277
+ R + A+ I+F+DE
Sbjct: 108 GAARVRDLFETAKRHAPCIVFIDE 131
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRR--- 264
++ +G G+GKT++A L RLL + + T + VGE V + K ++
Sbjct: 53 NILLIGPTGSGKTLLAETLARLLDVPFTMAD--ATTLTEAGYVGEDVENIIQKLLQKCDY 110
Query: 265 -IKEAEGGILFVDE 277
+++A+ GI+++D+
Sbjct: 111 DVQKAQRGIVYIDQ 124
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 201 VGARRPPHMAFLGNPGTGKTMVAR 224
+GA+ P + +G PGTGKT++A+
Sbjct: 39 LGAKIPKGVLLVGPPGTGKTLLAK 62
>pdb|2BJV|A Chain A, Crystal Structure Of Pspf(1-275) R168a Mutant
Length = 265
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 212 LGNPGTGKTMVARILGRLLYMV----GILPTDRVTEVQRTDLVGEFVGH-----TGPKTR 262
+G GTGK ++A RL Y+ G + + L E GH TG + R
Sbjct: 35 IGERGTGKELIA---SRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKR 91
Query: 263 R--RIKEAEGGILFVDE 277
R + A+GG LF+DE
Sbjct: 92 HPGRFERADGGTLFLDE 108
>pdb|2C9C|A Chain A, Structural Basis Of The Nucleotide Driven Conformational
Changes In The Aaa Domain Of Transcription Activator
Pspf
Length = 265
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 212 LGNPGTGKTMVARILGRLLYMV----GILPTDRVTEVQRTDLVGEFVGH-----TGPKTR 262
+G GTGK ++A RL Y+ G + + L E GH TG + R
Sbjct: 35 IGERGTGKELIA---SRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKR 91
Query: 263 R--RIKEAEGGILFVDE 277
R + A+GG LF+DE
Sbjct: 92 HPGRFERADGGTLFLDE 108
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 16/84 (19%)
Query: 200 KVGARRPPHMAFLGNPGTGKTMVARIL---GRLLYMVGILPTDRVTEVQRTDLVGEFVGH 256
++GAR P + +G PG GKT +AR + R+ ++ +D V FVG
Sbjct: 67 EMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITA----------SGSDFVEMFVGV 116
Query: 257 TGPKTRRRIKEAE---GGILFVDE 277
+ R + A+ I+F+DE
Sbjct: 117 GAARVRDLFETAKRHAPCIVFIDE 140
>pdb|2BJW|A Chain A, Pspf Aaa Domain
pdb|2C96|A Chain A, Structural Basis Of The Nucleotide Driven Conformational
Changes In The Aaa Domain Of Transcription Activator
Pspf
pdb|2C98|A Chain A, Structural Basis Of The Nucleotide Driven Conformational
Changes In The Aaa Domain Of Transcription Activator
Pspf
pdb|2C99|A Chain A, Structural Basis Of The Nucleotide Driven Conformational
Changes In The Aaa Domain Of Transcription Activator
Pspf
Length = 265
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 212 LGNPGTGKTMVARILGRLLYMV----GILPTDRVTEVQRTDLVGEFVGH-----TGPKTR 262
+G GTGK ++A RL Y+ G + + L E GH TG + R
Sbjct: 35 IGERGTGKELIA---SRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKR 91
Query: 263 R--RIKEAEGGILFVDE 277
R + A+GG LF+DE
Sbjct: 92 HPGRFERADGGTLFLDE 108
>pdb|2VII|A Chain A, Pspf1-275-mg-amp
Length = 259
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 212 LGNPGTGKTMVARILGRLLYMV----GILPTDRVTEVQRTDLVGEFVGH-----TGPKTR 262
+G GTGK ++A RL Y+ G + + L E GH TG + R
Sbjct: 35 IGERGTGKELIA---SRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKR 91
Query: 263 R--RIKEAEGGILFVDE 277
R + A+GG LF+DE
Sbjct: 92 HPGRFERADGGTLFLDE 108
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRR---- 263
++ +G G+GKT++A+ L + L + I +D T + VGE V + + +
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLD-IPIAISD-ATSLTEAGYVGEDVENILTRLLQASDW 131
Query: 264 RIKEAEGGILFVDEAYRL 281
+++A+ GI+F+DE ++
Sbjct: 132 NVQKAQKGIVFIDEIDKI 149
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144
L AA G E + LL GA A + G+ P+ + G SA++ ELLL H E
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMMG--SARVAELLLLHGAE 69
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 12/141 (8%)
Query: 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKS 66
+ S S P G ++LA+ +L+ LN+ N L +A + VK
Sbjct: 68 QNSISDSPYLYAGAQGRTEILAY--MLKHATPDLNKHNR-YGGNALIPAAEKGHIDNVKL 124
Query: 67 LLEWPGNDKVELEAQNMYGETPLHMAA--KNG---CNEAAKLLLAHGAFIEAKANEGKTP 121
LLE + + +++ QN +G T L A + G + KLL+ +GA K N G+T
Sbjct: 125 LLE---DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTA 181
Query: 122 LDHLSNGPGSAKLRELLLWHS 142
+D+ +N G ++ ++L ++
Sbjct: 182 MDY-ANQKGYTEISKILAQYN 201
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 21/161 (13%)
Query: 199 LKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT 257
L G R P + G PG GKT++AR V + + L ++VG
Sbjct: 46 LFTGLRAPAKGLLLFGPPGNGKTLLAR-------AVATECSATFLNISAASLTSKYVGD- 97
Query: 258 GPKTRRRI----KEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------G 307
G K R + + + I+F+DE L+ + + + + E + DG G
Sbjct: 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157
Query: 308 KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEEL 348
+V+ A + P + A+ F +RV + D + EL
Sbjct: 158 DRIVVLAATNRPQELDEAALRRFTKRV--YVSLPDEQTREL 196
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 22/157 (14%)
Query: 198 GLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT 257
GL+ AR + G PG GKTM+A+ V + L ++VG
Sbjct: 143 GLRAPAR---GLLLFGPPGNGKTMLAK-------AVAAESNATFFNISAASLTSKYVGE- 191
Query: 258 GPKTRRRI----KEAEGGILFVDEAYRLIPMQKADDKDYG----IEALEEIMSVMDGGKV 309
G K R + +E + I+F+D+ L+ ++ + D E L E V G
Sbjct: 192 GEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251
Query: 310 VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSE 346
V+ G + R +E RR K + + N E
Sbjct: 252 RVLVMGATN---RPQELDEAVLRRFIKRVYVSLPNEE 285
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 12 AKPATIHGCAQSGDLLAF-QRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEW 70
A ++H A G++L R+ +EN ++N + TPL +A + + +V+ LL+
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQEN--VINHTDE-EGFTPLMWAAAHGQIAVVEFLLQN 58
Query: 71 PGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNG 128
+ ++ + + E+ L +A G + K+LL G + G TPL + +G
Sbjct: 59 GADPQLLGKGR----ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,625,139
Number of Sequences: 62578
Number of extensions: 525158
Number of successful extensions: 2018
Number of sequences better than 100.0: 179
Number of HSP's better than 100.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 1483
Number of HSP's gapped (non-prelim): 403
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)