Query 013316
Match_columns 445
No_of_seqs 431 out of 3428
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 02:37:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013316.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013316hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 1.8E-41 4E-46 306.5 12.0 237 164-442 146-394 (406)
2 KOG0730 AAA+-type ATPase [Post 100.0 1.2E-36 2.7E-41 294.8 17.0 239 164-442 429-676 (693)
3 TIGR02880 cbbX_cfxQ probable R 100.0 1E-34 2.2E-39 270.0 25.7 262 161-436 13-281 (284)
4 CHL00181 cbbX CbbX; Provisiona 100.0 2.1E-34 4.6E-39 267.5 27.1 262 161-436 14-282 (287)
5 TIGR02881 spore_V_K stage V sp 100.0 1.1E-33 2.5E-38 261.5 25.1 253 166-433 3-261 (261)
6 KOG0738 AAA+-type ATPase [Post 100.0 4.1E-35 8.9E-40 267.0 14.7 247 165-444 208-473 (491)
7 KOG0733 Nuclear AAA ATPase (VC 100.0 6E-34 1.3E-38 272.4 15.7 249 164-443 506-772 (802)
8 KOG0733 Nuclear AAA ATPase (VC 100.0 2.4E-33 5.2E-38 268.3 15.4 200 165-389 186-398 (802)
9 COG1223 Predicted ATPase (AAA+ 100.0 1E-32 2.2E-37 238.7 14.5 230 165-440 117-355 (368)
10 KOG0728 26S proteasome regulat 100.0 1E-32 2.3E-37 237.4 12.9 234 167-442 145-390 (404)
11 KOG0727 26S proteasome regulat 100.0 7.4E-33 1.6E-37 238.6 10.4 234 165-440 151-396 (408)
12 KOG0736 Peroxisome assembly fa 100.0 1.6E-32 3.6E-37 268.9 14.1 246 165-443 668-935 (953)
13 KOG0734 AAA+-type ATPase conta 100.0 4.2E-32 9E-37 256.0 12.0 209 165-407 300-517 (752)
14 KOG0726 26S proteasome regulat 100.0 1.5E-32 3.4E-37 241.1 6.5 235 165-441 181-427 (440)
15 COG2204 AtoC Response regulato 100.0 4.5E-31 9.7E-36 253.6 9.7 322 28-409 19-372 (464)
16 KOG0652 26S proteasome regulat 100.0 7.2E-31 1.6E-35 227.4 9.9 235 165-441 167-413 (424)
17 KOG0737 AAA+-type ATPase [Post 100.0 2.8E-30 6.1E-35 235.5 12.5 208 162-393 85-302 (386)
18 KOG0729 26S proteasome regulat 100.0 1.8E-30 4E-35 225.5 6.5 235 164-440 172-418 (435)
19 COG0464 SpoVK ATPases of the A 100.0 6.6E-29 1.4E-33 250.8 16.8 240 165-443 238-486 (494)
20 PTZ00454 26S protease regulato 100.0 7E-29 1.5E-33 239.7 15.4 235 165-441 141-387 (398)
21 KOG0739 AAA+-type ATPase [Post 100.0 1.4E-29 2.9E-34 223.3 9.3 204 164-391 128-339 (439)
22 PRK03992 proteasome-activating 100.0 9.4E-29 2E-33 240.3 15.1 235 166-442 128-374 (389)
23 TIGR01243 CDC48 AAA family ATP 100.0 1.7E-28 3.6E-33 257.9 16.6 246 165-443 449-713 (733)
24 KOG0735 AAA+-type ATPase [Post 100.0 1.5E-28 3.1E-33 239.2 14.3 203 166-392 664-875 (952)
25 KOG0731 AAA+-type ATPase conta 100.0 7.5E-29 1.6E-33 248.2 12.6 233 164-439 306-552 (774)
26 PTZ00361 26 proteosome regulat 100.0 1.7E-28 3.7E-33 238.2 14.7 234 166-441 180-425 (438)
27 CHL00195 ycf46 Ycf46; Provisio 100.0 6.9E-28 1.5E-32 237.5 17.8 234 166-443 225-466 (489)
28 TIGR03689 pup_AAA proteasome A 99.9 1E-26 2.3E-31 228.6 20.4 260 165-439 178-477 (512)
29 COG0465 HflB ATP-dependent Zn 99.9 2.4E-27 5.2E-32 233.6 13.8 234 164-440 145-390 (596)
30 TIGR01241 FtsH_fam ATP-depende 99.9 6.7E-27 1.5E-31 235.3 16.2 234 165-441 51-296 (495)
31 KOG0651 26S proteasome regulat 99.9 3.2E-27 6.9E-32 209.7 10.6 233 167-441 130-374 (388)
32 KOG0741 AAA+-type ATPase [Post 99.9 2E-27 4.4E-32 224.2 8.7 246 171-443 223-493 (744)
33 KOG4412 26S proteasome regulat 99.9 4.6E-27 9.9E-32 191.7 7.5 143 12-159 37-179 (226)
34 CHL00176 ftsH cell division pr 99.9 3.8E-26 8.2E-31 232.1 15.4 233 165-440 179-423 (638)
35 TIGR01242 26Sp45 26S proteasom 99.9 3.6E-26 7.7E-31 221.7 13.8 233 166-440 119-363 (364)
36 KOG0740 AAA+-type ATPase [Post 99.9 1.9E-26 4E-31 218.4 10.8 246 165-443 149-407 (428)
37 COG3829 RocR Transcriptional r 99.9 3.3E-26 7.1E-31 219.4 11.9 204 166-408 242-476 (560)
38 KOG4412 26S proteasome regulat 99.9 6.3E-26 1.4E-30 185.1 11.6 144 3-152 61-205 (226)
39 COG2256 MGS1 ATPase related to 99.9 4.8E-25 1E-29 203.5 15.2 184 167-397 22-212 (436)
40 KOG0732 AAA+-type ATPase conta 99.9 4.6E-25 9.9E-30 226.7 14.3 251 165-442 261-527 (1080)
41 PLN00020 ribulose bisphosphate 99.9 1.8E-24 3.8E-29 199.9 15.9 145 201-359 143-314 (413)
42 KOG0730 AAA+-type ATPase [Post 99.9 1.9E-24 4.1E-29 210.4 14.0 197 170-391 185-390 (693)
43 COG3604 FhlA Transcriptional r 99.9 1.1E-24 2.4E-29 206.0 11.8 204 167-409 221-454 (550)
44 TIGR01243 CDC48 AAA family ATP 99.9 6.5E-24 1.4E-28 223.3 17.9 246 165-443 174-438 (733)
45 PF05496 RuvB_N: Holliday junc 99.9 5.9E-24 1.3E-28 184.2 13.1 183 167-407 22-225 (233)
46 PRK10733 hflB ATP-dependent me 99.9 1.2E-23 2.6E-28 216.6 17.3 235 163-440 146-392 (644)
47 COG1221 PspF Transcriptional r 99.9 1.4E-22 3E-27 191.8 14.1 207 166-411 75-309 (403)
48 COG2255 RuvB Holliday junction 99.9 1.7E-21 3.7E-26 171.9 17.8 188 166-411 23-231 (332)
49 KOG2028 ATPase related to the 99.9 2.5E-22 5.5E-27 182.2 12.5 222 166-439 135-367 (554)
50 TIGR02974 phageshock_pspF psp 99.9 3E-22 6.6E-27 190.1 12.9 203 171-411 1-233 (329)
51 TIGR02639 ClpA ATP-dependent C 99.9 1.9E-21 4E-26 204.0 19.4 244 167-442 180-431 (731)
52 CHL00206 ycf2 Ycf2; Provisiona 99.9 1.6E-22 3.4E-27 216.8 11.0 199 199-440 1623-1877(2281)
53 TIGR00390 hslU ATP-dependent p 99.9 5.7E-21 1.2E-25 180.9 18.8 166 269-441 247-431 (441)
54 TIGR02902 spore_lonB ATP-depen 99.9 2.1E-21 4.6E-26 195.6 15.9 213 166-438 62-330 (531)
55 PRK05201 hslU ATP-dependent pr 99.9 8.2E-21 1.8E-25 179.9 18.4 165 269-440 249-432 (443)
56 PRK11608 pspF phage shock prot 99.9 1.8E-21 4E-26 185.0 12.5 205 168-410 5-239 (326)
57 PRK13342 recombination factor 99.8 5.1E-20 1.1E-24 181.3 19.1 182 167-408 10-201 (413)
58 PRK15424 propionate catabolism 99.8 7.7E-21 1.7E-25 189.5 13.3 201 167-409 217-463 (538)
59 PRK05342 clpX ATP-dependent pr 99.8 6.5E-20 1.4E-24 177.8 19.2 255 163-435 64-400 (412)
60 TIGR02329 propionate_PrpR prop 99.8 1.5E-20 3.2E-25 187.9 14.0 203 166-410 209-449 (526)
61 TIGR01817 nifA Nif-specific re 99.8 8E-21 1.7E-25 193.5 11.6 203 167-409 194-426 (534)
62 PHA02791 ankyrin-like protein; 99.8 1.9E-20 4.1E-25 173.6 12.8 130 13-149 61-224 (284)
63 KOG0509 Ankyrin repeat and DHH 99.8 5.4E-21 1.2E-25 185.1 9.4 140 4-149 68-208 (600)
64 KOG0509 Ankyrin repeat and DHH 99.8 9.3E-21 2E-25 183.4 10.9 152 1-159 98-252 (600)
65 PRK13341 recombination factor 99.8 8.7E-20 1.9E-24 188.1 18.6 190 166-408 25-222 (725)
66 PRK05022 anaerobic nitric oxid 99.8 5.5E-20 1.2E-24 185.6 16.5 204 168-410 186-419 (509)
67 COG0542 clpA ATP-binding subun 99.8 1.1E-19 2.3E-24 184.3 18.5 221 161-410 482-753 (786)
68 PRK10923 glnG nitrogen regulat 99.8 8.2E-21 1.8E-25 191.4 10.3 265 86-409 75-369 (469)
69 PHA02791 ankyrin-like protein; 99.8 3.2E-20 6.9E-25 172.1 12.7 126 10-144 27-153 (284)
70 PRK11034 clpA ATP-dependent Cl 99.8 1.7E-19 3.7E-24 186.8 19.4 243 167-441 184-434 (758)
71 PHA02859 ankyrin repeat protei 99.8 4.5E-20 9.7E-25 164.8 13.0 141 12-157 50-197 (209)
72 TIGR00763 lon ATP-dependent pr 99.8 2E-19 4.4E-24 189.7 20.0 239 163-438 313-584 (775)
73 PRK10820 DNA-binding transcrip 99.8 3E-20 6.4E-25 187.5 13.0 206 166-410 201-436 (520)
74 KOG0744 AAA+-type ATPase [Post 99.8 1.2E-19 2.7E-24 162.4 14.7 192 163-360 136-344 (423)
75 PRK11034 clpA ATP-dependent Cl 99.8 1.8E-19 4E-24 186.6 18.2 219 163-412 451-716 (758)
76 PHA02741 hypothetical protein; 99.8 1E-19 2.2E-24 157.2 13.0 128 11-144 19-157 (169)
77 TIGR03345 VI_ClpV1 type VI sec 99.8 2.9E-19 6.3E-24 188.6 19.1 215 167-409 185-408 (852)
78 TIGR00635 ruvB Holliday juncti 99.8 3.5E-19 7.6E-24 169.3 17.0 206 167-439 2-228 (305)
79 PRK00080 ruvB Holliday junctio 99.8 7.5E-19 1.6E-23 168.2 19.3 206 167-439 23-249 (328)
80 PHA02743 Viral ankyrin protein 99.8 4.7E-20 1E-24 158.6 9.7 141 4-150 10-159 (166)
81 PHA02878 ankyrin repeat protei 99.8 1E-19 2.2E-24 183.8 13.0 149 2-159 155-307 (477)
82 COG3283 TyrR Transcriptional r 99.8 1.9E-19 4E-24 163.4 13.2 210 165-413 200-434 (511)
83 PRK15429 formate hydrogenlyase 99.8 2.1E-19 4.5E-24 188.2 15.1 205 166-409 373-607 (686)
84 KOG2004 Mitochondrial ATP-depe 99.8 7.3E-19 1.6E-23 172.4 17.1 211 170-416 412-650 (906)
85 TIGR00382 clpX endopeptidase C 99.8 1.6E-18 3.4E-23 167.1 19.0 254 163-434 70-405 (413)
86 PHA02878 ankyrin repeat protei 99.8 2.2E-19 4.7E-24 181.4 13.3 110 36-149 156-265 (477)
87 CHL00095 clpC Clp protease ATP 99.8 1.2E-18 2.7E-23 184.9 19.6 173 167-359 177-357 (821)
88 TIGR02915 PEP_resp_reg putativ 99.8 1.7E-19 3.6E-24 180.7 12.1 268 86-409 73-370 (445)
89 PHA02875 ankyrin repeat protei 99.8 2.5E-19 5.5E-24 177.8 13.1 141 2-148 23-197 (413)
90 PRK11388 DNA-binding transcrip 99.8 1.9E-19 4.1E-24 187.4 12.0 203 167-409 323-552 (638)
91 COG1219 ClpX ATP-dependent pro 99.8 3.2E-18 6.9E-23 153.3 17.8 230 163-409 54-365 (408)
92 KOG0508 Ankyrin repeat protein 99.8 1.7E-19 3.7E-24 167.9 9.9 126 12-144 83-208 (615)
93 TIGR02639 ClpA ATP-dependent C 99.8 2.6E-18 5.7E-23 180.4 19.8 218 163-411 447-711 (731)
94 PHA02874 ankyrin repeat protei 99.8 5E-19 1.1E-23 176.6 13.7 121 2-129 112-233 (434)
95 COG0466 Lon ATP-dependent Lon 99.8 2.2E-18 4.8E-23 170.0 17.6 235 165-438 318-582 (782)
96 PRK10787 DNA-binding ATP-depen 99.8 2.6E-18 5.7E-23 179.4 19.4 237 162-438 314-580 (784)
97 PRK14956 DNA polymerase III su 99.8 4.3E-18 9.2E-23 165.5 19.2 187 166-408 15-227 (484)
98 PHA02874 ankyrin repeat protei 99.8 5.2E-19 1.1E-23 176.5 13.3 132 12-146 34-184 (434)
99 KOG0512 Fetal globin-inducing 99.8 1.1E-18 2.3E-23 141.9 11.5 118 17-139 67-184 (228)
100 TIGR03346 chaperone_ClpB ATP-d 99.8 6.9E-18 1.5E-22 179.7 20.3 220 164-411 559-825 (852)
101 PHA02875 ankyrin repeat protei 99.8 1E-18 2.2E-23 173.5 13.0 136 13-155 2-171 (413)
102 KOG0989 Replication factor C, 99.8 3E-18 6.5E-23 153.1 14.5 183 166-394 33-227 (346)
103 PRK15115 response regulator Gl 99.8 3.1E-19 6.7E-24 178.7 9.3 258 87-409 78-365 (444)
104 PRK11361 acetoacetate metaboli 99.8 2.6E-19 5.7E-24 180.1 8.7 269 86-409 76-374 (457)
105 TIGR01818 ntrC nitrogen regula 99.8 3.6E-19 7.8E-24 179.3 9.6 202 170-410 135-366 (463)
106 PRK07003 DNA polymerase III su 99.8 1.1E-17 2.4E-22 168.4 19.7 188 166-409 13-226 (830)
107 TIGR02903 spore_lon_C ATP-depe 99.8 4.4E-18 9.5E-23 174.2 17.1 222 166-439 151-429 (615)
108 PHA02716 CPXV016; CPX019; EVM0 99.8 7.4E-19 1.6E-23 180.4 11.3 150 2-157 200-404 (764)
109 PHA02859 ankyrin repeat protei 99.8 2.2E-18 4.8E-23 153.9 12.5 138 11-157 19-163 (209)
110 PHA03100 ankyrin repeat protei 99.8 1.9E-18 4E-23 175.1 13.2 150 3-159 130-290 (480)
111 PHA02946 ankyin-like protein; 99.8 1.7E-18 3.7E-23 172.0 12.2 150 2-158 60-214 (446)
112 KOG0508 Ankyrin repeat protein 99.8 6.8E-19 1.5E-23 163.9 8.4 131 2-140 105-236 (615)
113 PRK14962 DNA polymerase III su 99.8 2.6E-17 5.6E-22 162.8 19.5 187 166-408 11-223 (472)
114 PRK12323 DNA polymerase III su 99.8 2.2E-17 4.8E-22 164.3 18.8 187 166-408 13-230 (700)
115 PHA02716 CPXV016; CPX019; EVM0 99.8 2.5E-18 5.4E-23 176.6 12.3 151 2-158 163-358 (764)
116 PHA03100 ankyrin repeat protei 99.8 3.1E-18 6.7E-23 173.5 12.9 140 2-148 164-312 (480)
117 PHA02736 Viral ankyrin protein 99.8 9.5E-19 2.1E-23 149.0 7.5 129 11-145 15-152 (154)
118 PF00004 AAA: ATPase family as 99.8 1.5E-18 3.2E-23 143.8 8.4 122 209-342 1-132 (132)
119 PRK10865 protein disaggregatio 99.8 1.1E-17 2.4E-22 177.4 16.8 173 167-359 176-357 (857)
120 TIGR03346 chaperone_ClpB ATP-d 99.8 1.5E-17 3.2E-22 177.2 17.1 174 167-360 171-353 (852)
121 KOG0510 Ankyrin repeat protein 99.8 2.1E-18 4.6E-23 170.5 9.7 133 10-147 270-405 (929)
122 PRK14960 DNA polymerase III su 99.8 4.6E-17 9.9E-22 162.4 19.0 188 166-409 12-225 (702)
123 PRK14964 DNA polymerase III su 99.8 5.2E-17 1.1E-21 159.8 18.9 188 166-409 10-223 (491)
124 PHA02795 ankyrin-like protein; 99.7 6.4E-18 1.4E-22 162.8 12.0 137 2-145 139-288 (437)
125 PLN03192 Voltage-dependent pot 99.7 5.4E-18 1.2E-22 181.2 12.7 142 2-152 546-688 (823)
126 PRK14958 DNA polymerase III su 99.7 6E-17 1.3E-21 161.8 19.2 187 166-408 13-225 (509)
127 PRK10365 transcriptional regul 99.7 2.7E-18 5.9E-23 171.9 9.3 201 170-409 140-370 (441)
128 PRK06645 DNA polymerase III su 99.7 6E-17 1.3E-21 160.7 18.5 188 166-409 18-235 (507)
129 PHA02989 ankyrin repeat protei 99.7 1E-17 2.3E-22 169.7 13.4 152 2-160 96-297 (494)
130 PHA03095 ankyrin-like protein; 99.7 9.3E-18 2E-22 169.6 12.5 148 2-155 35-190 (471)
131 PHA02798 ankyrin-like protein; 99.7 1.6E-17 3.5E-22 168.1 14.2 46 114-160 254-299 (489)
132 KOG0742 AAA+-type ATPase [Post 99.7 1.8E-17 3.9E-22 152.9 12.6 171 168-360 354-532 (630)
133 PHA02884 ankyrin repeat protei 99.7 1.9E-17 4.2E-22 153.4 12.9 122 12-139 32-157 (300)
134 PRK14961 DNA polymerase III su 99.7 1.6E-16 3.4E-21 153.9 19.7 187 166-408 13-225 (363)
135 PRK14949 DNA polymerase III su 99.7 5.8E-17 1.3E-21 166.4 17.3 186 166-408 13-225 (944)
136 PRK10865 protein disaggregatio 99.7 1E-16 2.2E-21 170.1 19.3 221 162-410 560-827 (857)
137 PHA02876 ankyrin repeat protei 99.7 1.4E-17 3.1E-22 175.4 12.4 150 2-157 295-447 (682)
138 PRK07994 DNA polymerase III su 99.7 1.9E-16 4.2E-21 160.2 19.8 187 166-408 13-225 (647)
139 TIGR03420 DnaA_homol_Hda DnaA 99.7 8.3E-17 1.8E-21 146.3 15.7 186 204-437 36-225 (226)
140 KOG0195 Integrin-linked kinase 99.7 6.3E-18 1.4E-22 148.2 7.8 130 10-146 31-160 (448)
141 TIGR03345 VI_ClpV1 type VI sec 99.7 1E-16 2.2E-21 169.5 18.3 219 162-409 558-828 (852)
142 COG0542 clpA ATP-binding subun 99.7 1.4E-16 3E-21 161.8 18.3 175 166-359 167-349 (786)
143 COG1220 HslU ATP-dependent pro 99.7 2.1E-16 4.5E-21 142.8 17.3 163 270-440 251-433 (444)
144 PHA02798 ankyrin-like protein; 99.7 2.7E-17 6E-22 166.4 13.2 144 2-148 97-320 (489)
145 KOG0502 Integral membrane anky 99.7 2.6E-17 5.6E-22 138.9 10.4 139 11-158 127-265 (296)
146 KOG4177 Ankyrin [Cell wall/mem 99.7 1.4E-17 2.9E-22 174.5 10.6 137 2-144 462-631 (1143)
147 CHL00095 clpC Clp protease ATP 99.7 1.8E-16 3.9E-21 168.4 19.3 219 163-409 502-779 (821)
148 PHA03095 ankyrin-like protein; 99.7 4.7E-17 1E-21 164.5 14.1 153 2-161 105-299 (471)
149 PLN03025 replication factor C 99.7 1.7E-16 3.7E-21 151.2 17.0 181 167-406 11-203 (319)
150 PRK08691 DNA polymerase III su 99.7 2.5E-16 5.3E-21 158.7 18.6 188 166-409 13-226 (709)
151 PHA02946 ankyin-like protein; 99.7 3.4E-17 7.3E-22 162.7 11.7 150 1-159 92-249 (446)
152 PRK14952 DNA polymerase III su 99.7 4.2E-16 9.1E-21 157.0 19.7 187 166-409 10-225 (584)
153 PRK14957 DNA polymerase III su 99.7 5.6E-16 1.2E-20 154.7 20.2 188 166-409 13-226 (546)
154 KOG0510 Ankyrin repeat protein 99.7 4.8E-17 1E-21 161.0 12.2 138 3-146 214-368 (929)
155 PHA02876 ankyrin repeat protei 99.7 5.5E-17 1.2E-21 171.0 12.7 150 2-157 261-413 (682)
156 PHA02730 ankyrin-like protein; 99.7 8.8E-17 1.9E-21 162.2 13.1 141 1-146 366-525 (672)
157 PRK12402 replication factor C 99.7 7.1E-16 1.5E-20 148.9 18.9 188 167-407 13-230 (337)
158 PF12796 Ank_2: Ankyrin repeat 99.7 1.1E-16 2.5E-21 122.7 10.5 89 17-115 1-89 (89)
159 PTZ00322 6-phosphofructo-2-kin 99.7 1.7E-16 3.6E-21 164.9 15.2 102 15-122 84-192 (664)
160 PRK05563 DNA polymerase III su 99.7 8E-16 1.7E-20 155.9 19.7 188 166-409 13-226 (559)
161 PF00158 Sigma54_activat: Sigm 99.7 2.2E-17 4.7E-22 141.2 7.0 124 171-323 1-149 (168)
162 PHA02795 ankyrin-like protein; 99.7 6.6E-17 1.4E-21 155.8 11.1 149 2-159 98-261 (437)
163 KOG0505 Myosin phosphatase, re 99.7 5.9E-17 1.3E-21 154.0 10.4 155 2-159 61-271 (527)
164 KOG0514 Ankyrin repeat protein 99.7 3E-17 6.4E-22 148.5 7.9 125 11-142 266-396 (452)
165 PRK14951 DNA polymerase III su 99.7 9.1E-16 2E-20 155.1 19.6 187 166-408 13-230 (618)
166 PRK14959 DNA polymerase III su 99.7 7.3E-16 1.6E-20 154.7 18.3 186 166-407 13-224 (624)
167 PTZ00112 origin recognition co 99.7 9.7E-16 2.1E-20 155.2 19.1 222 170-440 756-1006(1164)
168 PHA02743 Viral ankyrin protein 99.7 1.5E-16 3.2E-21 136.8 11.5 114 3-120 46-163 (166)
169 PRK14963 DNA polymerase III su 99.7 1.1E-15 2.4E-20 152.4 19.4 186 166-407 11-221 (504)
170 PHA02989 ankyrin repeat protei 99.7 1.1E-16 2.4E-21 162.3 12.4 140 1-147 23-175 (494)
171 PRK14969 DNA polymerase III su 99.7 1.1E-15 2.5E-20 153.7 19.2 188 166-409 13-226 (527)
172 PRK07764 DNA polymerase III su 99.7 1.2E-15 2.5E-20 159.6 19.8 187 166-408 12-226 (824)
173 PRK04195 replication factor C 99.7 9.5E-16 2.1E-20 154.0 18.2 176 167-392 12-197 (482)
174 KOG0502 Integral membrane anky 99.7 5.5E-17 1.2E-21 137.0 7.6 128 6-140 152-280 (296)
175 KOG0195 Integrin-linked kinase 99.7 2.4E-17 5.2E-22 144.6 5.0 136 18-159 5-140 (448)
176 PRK08903 DnaA regulatory inact 99.7 1.3E-15 2.8E-20 138.4 16.1 178 204-438 40-224 (227)
177 COG3284 AcoR Transcriptional a 99.7 1E-16 2.3E-21 157.1 9.5 175 203-407 333-536 (606)
178 PHA02544 44 clamp loader, smal 99.7 1.4E-15 3E-20 145.4 16.9 177 166-387 18-200 (316)
179 KOG0745 Putative ATP-dependent 99.7 1.3E-15 2.8E-20 141.8 15.4 191 206-409 226-506 (564)
180 PHA02917 ankyrin-like protein; 99.7 2.7E-16 5.9E-21 162.3 12.2 153 3-157 21-234 (661)
181 PRK14965 DNA polymerase III su 99.7 2.7E-15 5.9E-20 152.8 19.1 188 166-409 13-226 (576)
182 KOG4177 Ankyrin [Cell wall/mem 99.7 1E-16 2.2E-21 168.0 8.3 155 2-159 428-613 (1143)
183 PRK05896 DNA polymerase III su 99.7 3.7E-15 8.1E-20 148.9 18.9 186 166-407 13-224 (605)
184 COG1474 CDC6 Cdc6-related prot 99.7 3.5E-15 7.6E-20 142.9 18.1 204 203-440 39-265 (366)
185 TIGR02928 orc1/cdc6 family rep 99.7 2.9E-15 6.3E-20 146.2 17.7 227 170-440 16-274 (365)
186 PRK09111 DNA polymerase III su 99.7 4.3E-15 9.2E-20 150.6 19.4 187 166-408 21-238 (598)
187 PRK08451 DNA polymerase III su 99.7 6.7E-15 1.4E-19 146.2 20.0 188 166-409 11-224 (535)
188 PRK00411 cdc6 cell division co 99.7 5.5E-15 1.2E-19 145.8 19.2 227 170-441 31-283 (394)
189 TIGR02397 dnaX_nterm DNA polym 99.7 8.7E-15 1.9E-19 142.3 20.0 187 166-408 11-223 (355)
190 PRK06647 DNA polymerase III su 99.7 7E-15 1.5E-19 148.5 19.7 187 166-408 13-225 (563)
191 PRK14955 DNA polymerase III su 99.6 5.1E-15 1.1E-19 145.0 17.5 187 166-408 13-233 (397)
192 TIGR02640 gas_vesic_GvpN gas v 99.6 5.4E-15 1.2E-19 136.6 16.5 133 205-356 20-198 (262)
193 PHA02917 ankyrin-like protein; 99.6 1.1E-15 2.3E-20 158.0 12.6 114 24-145 114-256 (661)
194 KOG4214 Myotrophin and similar 99.6 8.9E-16 1.9E-20 111.6 8.4 101 15-122 4-104 (117)
195 PLN03192 Voltage-dependent pot 99.6 1E-15 2.2E-20 163.7 12.7 141 10-159 522-662 (823)
196 KOG0512 Fetal globin-inducing 99.6 6.3E-16 1.4E-20 125.9 8.4 117 6-129 89-208 (228)
197 PRK07133 DNA polymerase III su 99.6 8.7E-15 1.9E-19 149.1 18.6 186 166-407 15-223 (725)
198 PRK08084 DNA replication initi 99.6 2.3E-14 5E-19 130.2 19.3 189 205-438 44-234 (235)
199 PRK14953 DNA polymerase III su 99.6 1.9E-14 4.1E-19 143.1 19.8 187 166-408 13-225 (486)
200 COG2812 DnaX DNA polymerase II 99.6 5.3E-15 1.1E-19 145.1 15.2 196 165-410 12-227 (515)
201 PRK14970 DNA polymerase III su 99.6 1.7E-14 3.7E-19 140.6 18.7 187 166-408 14-214 (367)
202 PRK06305 DNA polymerase III su 99.6 1.4E-14 3.1E-19 143.2 17.4 186 166-407 14-226 (451)
203 PHA02884 ankyrin repeat protei 99.6 4E-15 8.8E-20 138.0 12.6 130 1-144 53-187 (300)
204 PHA02730 ankyrin-like protein; 99.6 4.9E-15 1.1E-19 149.7 13.2 132 10-146 38-182 (672)
205 PRK14954 DNA polymerase III su 99.6 3.9E-14 8.5E-19 143.9 19.7 193 166-408 13-233 (620)
206 PRK07940 DNA polymerase III su 99.6 7.2E-15 1.6E-19 142.1 12.9 158 167-353 3-186 (394)
207 PRK14950 DNA polymerase III su 99.6 6.3E-14 1.4E-18 143.5 20.2 186 166-407 13-225 (585)
208 PRK00440 rfc replication facto 99.6 2.6E-14 5.7E-19 136.9 16.3 187 166-407 14-207 (319)
209 PRK06893 DNA replication initi 99.6 4.1E-14 8.8E-19 128.2 16.2 185 207-438 40-228 (229)
210 PF01078 Mg_chelatase: Magnesi 99.6 4.1E-16 8.8E-21 134.9 2.9 151 168-347 2-206 (206)
211 KOG0991 Replication factor C, 99.6 8.1E-15 1.7E-19 126.0 10.4 180 166-396 24-213 (333)
212 TIGR00368 Mg chelatase-related 99.6 1.8E-14 4E-19 143.2 14.3 153 167-348 190-396 (499)
213 PRK13407 bchI magnesium chelat 99.6 1.5E-14 3.2E-19 136.5 12.9 160 167-357 6-217 (334)
214 CHL00081 chlI Mg-protoporyphyr 99.6 7.4E-14 1.6E-18 131.9 17.6 159 167-356 15-232 (350)
215 PRK14948 DNA polymerase III su 99.6 6.5E-14 1.4E-18 143.1 18.5 185 166-406 13-225 (620)
216 PRK12422 chromosomal replicati 99.6 3.9E-14 8.5E-19 139.5 16.1 173 206-408 141-318 (445)
217 PHA02736 Viral ankyrin protein 99.6 6.2E-15 1.3E-19 125.4 9.0 99 10-112 52-153 (154)
218 PHA02741 hypothetical protein; 99.6 5E-15 1.1E-19 127.9 8.0 117 41-159 15-139 (169)
219 PRK14971 DNA polymerase III su 99.6 1.4E-13 3.1E-18 140.6 19.2 187 166-408 14-227 (614)
220 TIGR02442 Cob-chelat-sub cobal 99.6 4.3E-14 9.3E-19 145.9 15.1 159 168-357 3-215 (633)
221 KOG0743 AAA+-type ATPase [Post 99.6 4.9E-14 1.1E-18 133.3 14.1 172 167-359 199-386 (457)
222 PF12796 Ank_2: Ankyrin repeat 99.6 8.3E-15 1.8E-19 112.3 7.4 88 52-148 1-88 (89)
223 PRK08727 hypothetical protein; 99.6 5.2E-13 1.1E-17 121.2 20.0 186 206-438 41-229 (233)
224 TIGR00362 DnaA chromosomal rep 99.6 6.2E-14 1.4E-18 138.3 15.1 175 206-410 136-317 (405)
225 PRK00149 dnaA chromosomal repl 99.6 4.7E-14 1E-18 140.8 14.2 175 206-410 148-329 (450)
226 COG0606 Predicted ATPase with 99.5 9.2E-15 2E-19 139.3 8.0 154 166-348 176-384 (490)
227 cd00204 ANK ankyrin repeats; 99.5 9.2E-14 2E-18 113.1 13.0 121 11-138 5-125 (126)
228 KOG0735 AAA+-type ATPase [Post 99.5 7.5E-14 1.6E-18 137.4 13.8 210 204-443 429-651 (952)
229 PHA02792 ankyrin-like protein; 99.5 3.3E-14 7.2E-19 142.3 10.7 117 2-125 329-450 (631)
230 KOG0505 Myosin phosphatase, re 99.5 2.1E-14 4.6E-19 136.8 8.7 121 1-127 93-273 (527)
231 TIGR00764 lon_rel lon-related 99.5 9.5E-14 2.1E-18 141.9 13.4 147 264-439 212-390 (608)
232 TIGR02030 BchI-ChlI magnesium 99.5 4.5E-13 9.8E-18 126.8 16.3 158 168-356 3-219 (337)
233 PRK05642 DNA replication initi 99.5 1.4E-12 3.1E-17 118.3 16.8 167 206-408 45-213 (234)
234 KOG0514 Ankyrin repeat protein 99.5 2.5E-14 5.5E-19 129.7 5.1 116 38-159 259-380 (452)
235 PRK14088 dnaA chromosomal repl 99.5 7E-13 1.5E-17 131.1 15.7 175 206-409 130-311 (440)
236 KOG0736 Peroxisome assembly fa 99.5 5.6E-13 1.2E-17 132.5 14.1 142 206-359 431-579 (953)
237 PRK14086 dnaA chromosomal repl 99.5 1.5E-12 3.3E-17 130.3 17.4 174 207-409 315-494 (617)
238 TIGR00870 trp transient-recept 99.5 1.3E-13 2.9E-18 146.6 10.5 127 11-143 126-281 (743)
239 PRK06620 hypothetical protein; 99.5 5E-13 1.1E-17 119.2 12.4 167 207-437 45-213 (214)
240 PF07724 AAA_2: AAA domain (Cd 99.5 9.3E-14 2E-18 119.2 7.3 111 205-321 2-133 (171)
241 PRK14087 dnaA chromosomal repl 99.5 2.3E-12 5E-17 127.5 18.0 178 206-408 141-324 (450)
242 PF14532 Sigma54_activ_2: Sigm 99.5 5.2E-14 1.1E-18 117.2 5.3 132 172-343 1-138 (138)
243 PTZ00111 DNA replication licen 99.5 6.2E-13 1.3E-17 137.5 14.0 142 204-357 490-658 (915)
244 KOG0507 CASK-interacting adapt 99.5 7E-14 1.5E-18 137.9 6.2 123 12-141 48-170 (854)
245 smart00350 MCM minichromosome 99.5 7E-13 1.5E-17 133.8 13.6 242 170-442 204-506 (509)
246 PRK09087 hypothetical protein; 99.4 3E-12 6.5E-17 115.2 15.4 178 206-441 44-223 (226)
247 PRK13531 regulatory ATPase Rav 99.4 6.9E-13 1.5E-17 128.9 10.7 149 171-355 22-193 (498)
248 COG0666 Arp FOG: Ankyrin repea 99.4 2.1E-12 4.5E-17 116.8 13.2 125 11-142 71-203 (235)
249 PHA02792 ankyrin-like protein; 99.4 5.5E-13 1.2E-17 133.6 9.9 133 6-141 63-239 (631)
250 TIGR00870 trp transient-recept 99.4 1.1E-12 2.3E-17 139.7 12.9 149 4-159 42-215 (743)
251 KOG3676 Ca2+-permeable cation 99.4 3.2E-13 7E-18 134.9 7.9 142 12-158 142-314 (782)
252 PF05673 DUF815: Protein of un 99.4 1.7E-11 3.7E-16 108.5 17.9 161 167-359 25-210 (249)
253 KOG1051 Chaperone HSP104 and r 99.4 4.3E-12 9.4E-17 131.1 16.4 178 164-364 556-792 (898)
254 PHA02244 ATPase-like protein 99.4 3.6E-12 7.8E-17 119.8 14.3 125 205-348 118-266 (383)
255 KOG3676 Ca2+-permeable cation 99.4 6.8E-13 1.5E-17 132.6 9.3 124 12-141 183-330 (782)
256 COG4650 RtcR Sigma54-dependent 99.4 3.6E-12 7.7E-17 113.6 12.7 186 204-407 206-422 (531)
257 KOG1710 MYND Zn-finger and ank 99.4 1.2E-12 2.6E-17 115.2 9.2 124 12-142 11-135 (396)
258 PRK13765 ATP-dependent proteas 99.4 3.5E-12 7.7E-17 129.9 13.6 146 264-438 221-398 (637)
259 PRK09112 DNA polymerase III su 99.4 7.5E-12 1.6E-16 119.6 14.7 157 167-355 21-212 (351)
260 PRK09862 putative ATP-dependen 99.4 2.3E-12 5.1E-17 127.6 11.4 152 167-347 189-392 (506)
261 TIGR00678 holB DNA polymerase 99.4 5.1E-12 1.1E-16 111.1 12.5 129 205-355 13-167 (188)
262 PF00308 Bac_DnaA: Bacterial d 99.4 2.5E-12 5.5E-17 115.3 10.5 171 206-408 34-213 (219)
263 TIGR02031 BchD-ChlD magnesium 99.4 3.6E-12 7.8E-17 130.2 12.5 133 206-356 16-174 (589)
264 PRK07399 DNA polymerase III su 99.4 2E-11 4.3E-16 115.2 16.4 158 167-356 2-195 (314)
265 COG1239 ChlI Mg-chelatase subu 99.4 2.2E-11 4.7E-16 114.9 16.5 160 168-358 16-234 (423)
266 KOG4214 Myotrophin and similar 99.4 1.2E-12 2.6E-17 95.4 6.1 98 49-152 3-100 (117)
267 PF13637 Ank_4: Ankyrin repeat 99.4 1.8E-12 3.8E-17 88.9 6.3 54 48-105 1-54 (54)
268 PRK07471 DNA polymerase III su 99.4 2.8E-11 6.2E-16 116.3 16.8 158 167-356 17-213 (365)
269 KOG0515 p53-interacting protei 99.4 2.3E-12 5E-17 122.0 9.0 119 16-140 553-673 (752)
270 TIGR00602 rad24 checkpoint pro 99.4 9.5E-12 2.1E-16 126.4 13.9 204 167-396 82-322 (637)
271 TIGR01650 PD_CobS cobaltochela 99.3 2.9E-12 6.3E-17 119.2 8.8 133 206-356 64-233 (327)
272 COG1224 TIP49 DNA helicase TIP 99.3 2E-11 4.3E-16 111.7 13.4 133 270-440 292-432 (450)
273 KOG0507 CASK-interacting adapt 99.3 3.5E-12 7.6E-17 126.1 8.0 138 14-157 4-153 (854)
274 TIGR03015 pepcterm_ATPase puta 99.3 1.2E-10 2.7E-15 108.6 17.9 204 206-441 43-267 (269)
275 PF13857 Ank_5: Ankyrin repeat 99.3 1.7E-12 3.7E-17 89.5 3.9 47 76-122 7-53 (56)
276 PRK08058 DNA polymerase III su 99.3 2.3E-11 4.9E-16 116.2 12.9 150 168-354 4-180 (329)
277 PF06068 TIP49: TIP49 C-termin 99.3 2.8E-11 6.1E-16 112.6 13.0 95 270-387 279-381 (398)
278 PF13857 Ank_5: Ankyrin repeat 99.3 1.9E-12 4.1E-17 89.3 4.0 55 33-92 2-56 (56)
279 COG0470 HolB ATPase involved i 99.3 2.3E-11 5.1E-16 116.8 13.0 146 170-348 2-173 (325)
280 cd00009 AAA The AAA+ (ATPases 99.3 1.5E-11 3.2E-16 103.4 9.8 124 205-342 18-151 (151)
281 PF07728 AAA_5: AAA domain (dy 99.3 1.8E-12 3.9E-17 108.2 4.0 108 208-334 1-139 (139)
282 PRK05564 DNA polymerase III su 99.3 8.1E-11 1.8E-15 112.0 14.9 154 167-356 2-165 (313)
283 COG0714 MoxR-like ATPases [Gen 99.3 1.5E-11 3.2E-16 117.9 8.9 132 205-354 42-201 (329)
284 COG2607 Predicted ATPase (AAA+ 99.3 7.6E-10 1.6E-14 96.3 18.3 196 167-407 58-277 (287)
285 PRK04132 replication factor C 99.2 7.2E-11 1.6E-15 123.1 14.0 157 208-407 566-735 (846)
286 PF13637 Ank_4: Ankyrin repeat 99.2 1.5E-11 3.3E-16 84.2 6.1 54 13-68 1-54 (54)
287 PF13177 DNA_pol3_delta2: DNA 99.2 1.4E-10 3E-15 99.0 12.7 137 173-344 1-162 (162)
288 PF07726 AAA_3: ATPase family 99.2 2.2E-12 4.8E-17 102.3 1.2 109 208-334 1-129 (131)
289 cd00204 ANK ankyrin repeats; 99.2 5.8E-11 1.3E-15 96.4 9.4 94 47-145 6-99 (126)
290 PRK11331 5-methylcytosine-spec 99.2 2.1E-10 4.6E-15 110.8 14.6 154 166-349 172-365 (459)
291 KOG0990 Replication factor C, 99.2 2.8E-11 6E-16 109.4 7.9 180 167-396 39-231 (360)
292 COG0464 SpoVK ATPases of the A 99.2 7.8E-11 1.7E-15 119.4 12.2 208 201-442 13-228 (494)
293 KOG1969 DNA replication checkp 99.2 3.7E-10 8.1E-15 112.3 15.9 188 165-397 267-510 (877)
294 COG0593 DnaA ATPase involved i 99.2 3.4E-10 7.5E-15 108.3 14.7 179 205-411 112-294 (408)
295 smart00763 AAA_PrkA PrkA AAA d 99.2 2E-09 4.4E-14 101.4 17.7 78 269-358 236-329 (361)
296 KOG2035 Replication factor C, 99.2 1.7E-09 3.7E-14 95.9 15.8 185 167-407 11-232 (351)
297 PRK05707 DNA polymerase III su 99.2 2.7E-10 5.8E-15 108.1 11.7 131 205-355 21-177 (328)
298 PF05621 TniB: Bacterial TniB 99.1 1.1E-09 2.3E-14 100.3 14.8 209 170-407 35-265 (302)
299 PTZ00322 6-phosphofructo-2-kin 99.1 1E-10 2.2E-15 121.9 8.4 153 51-235 85-244 (664)
300 COG0666 Arp FOG: Ankyrin repea 99.1 2.8E-10 6.1E-15 102.7 9.1 102 2-108 94-203 (235)
301 KOG1514 Origin recognition com 99.1 8E-09 1.7E-13 102.8 19.5 207 207-441 423-656 (767)
302 PRK06964 DNA polymerase III su 99.1 1.9E-09 4.1E-14 102.2 13.8 134 204-354 19-202 (342)
303 PRK06871 DNA polymerase III su 99.0 3.1E-09 6.6E-14 100.1 13.6 131 204-355 22-178 (325)
304 KOG1942 DNA helicase, TBP-inte 99.0 1.5E-09 3.3E-14 96.9 10.2 78 270-359 297-383 (456)
305 PRK08116 hypothetical protein; 99.0 5.3E-09 1.2E-13 96.7 14.1 127 206-345 114-251 (268)
306 PRK08769 DNA polymerase III su 99.0 5.3E-09 1.2E-13 98.4 14.2 131 204-354 24-183 (319)
307 smart00382 AAA ATPases associa 99.0 1.4E-09 3E-14 90.5 9.3 124 206-343 2-147 (148)
308 PRK08699 DNA polymerase III su 99.0 3.7E-09 8E-14 100.2 11.7 133 204-354 19-183 (325)
309 PF00493 MCM: MCM2/3/5 family 99.0 1.6E-09 3.6E-14 103.3 9.3 204 205-441 56-327 (331)
310 PRK13406 bchD magnesium chelat 99.0 2.2E-09 4.8E-14 108.9 10.4 200 206-441 25-251 (584)
311 KOG2227 Pre-initiation complex 99.0 1.5E-08 3.3E-13 96.4 15.2 165 171-360 152-342 (529)
312 KOG0515 p53-interacting protei 99.0 1.1E-09 2.5E-14 104.1 7.3 89 52-145 554-642 (752)
313 PRK07993 DNA polymerase III su 99.0 8.1E-09 1.8E-13 98.3 12.9 131 204-354 22-178 (334)
314 COG1241 MCM2 Predicted ATPase 98.9 1E-08 2.2E-13 104.2 13.5 235 169-441 286-593 (682)
315 PRK06090 DNA polymerase III su 98.9 1.3E-08 2.7E-13 95.7 13.3 131 204-354 23-178 (319)
316 KOG0741 AAA+-type ATPase [Post 98.9 9E-09 1.9E-13 99.0 11.9 135 205-354 537-684 (744)
317 KOG4369 RTK signaling protein 98.9 6.9E-10 1.5E-14 113.7 4.4 136 7-149 751-887 (2131)
318 PRK12377 putative replication 98.9 1.3E-08 2.8E-13 92.4 10.6 73 206-282 101-176 (248)
319 KOG1710 MYND Zn-finger and ank 98.9 7.9E-09 1.7E-13 91.5 8.7 124 48-186 12-136 (396)
320 KOG1051 Chaperone HSP104 and r 98.9 2.6E-08 5.7E-13 103.6 13.6 150 205-358 207-365 (898)
321 PF13173 AAA_14: AAA domain 98.9 1.6E-08 3.4E-13 82.9 9.5 120 207-347 3-126 (128)
322 PRK07952 DNA replication prote 98.8 2.3E-08 5E-13 90.6 10.8 73 206-282 99-175 (244)
323 KOG4369 RTK signaling protein 98.8 3.1E-09 6.8E-14 109.1 4.4 140 3-148 779-921 (2131)
324 KOG0506 Glutaminase (contains 98.8 6.4E-09 1.4E-13 97.9 4.9 89 48-141 506-595 (622)
325 PF01637 Arch_ATPase: Archaeal 98.8 2E-07 4.3E-12 84.8 14.2 150 205-359 19-207 (234)
326 PF13606 Ank_3: Ankyrin repeat 98.7 1.4E-08 3.1E-13 59.6 3.9 29 84-112 1-29 (30)
327 PRK06835 DNA replication prote 98.7 1.4E-07 3.1E-12 89.4 12.8 124 207-344 184-318 (329)
328 PRK08181 transposase; Validate 98.7 9.8E-08 2.1E-12 87.8 10.5 74 206-283 106-181 (269)
329 KOG2680 DNA helicase TIP49, TB 98.7 4.6E-07 1E-11 81.6 13.6 133 270-440 289-429 (454)
330 KOG0478 DNA replication licens 98.7 3.8E-07 8.2E-12 90.6 14.3 208 205-440 461-724 (804)
331 KOG0783 Uncharacterized conser 98.7 1.2E-08 2.7E-13 102.1 4.0 95 28-127 32-128 (1267)
332 PRK05917 DNA polymerase III su 98.7 3.6E-07 7.8E-12 84.3 13.3 121 204-344 17-155 (290)
333 PF00023 Ank: Ankyrin repeat H 98.7 3.4E-08 7.5E-13 59.7 4.2 32 84-115 1-32 (33)
334 PF13401 AAA_22: AAA domain; P 98.7 5.9E-08 1.3E-12 79.8 7.1 102 206-317 4-125 (131)
335 PF05729 NACHT: NACHT domain 98.6 5.9E-07 1.3E-11 77.0 13.0 144 208-358 2-165 (166)
336 KOG2170 ATPase of the AAA+ sup 98.6 2.8E-07 6.1E-12 83.2 11.0 124 161-305 73-203 (344)
337 KOG0818 GTPase-activating prot 98.6 1.2E-07 2.6E-12 89.9 9.0 86 16-106 136-221 (669)
338 PRK06526 transposase; Provisio 98.6 8.5E-08 1.8E-12 87.8 7.7 75 205-283 97-173 (254)
339 KOG0480 DNA replication licens 98.6 8.8E-07 1.9E-11 87.4 13.9 243 169-442 345-645 (764)
340 PF03215 Rad17: Rad17 cell cyc 98.6 1E-06 2.3E-11 88.4 13.9 200 169-397 19-263 (519)
341 PF13606 Ank_3: Ankyrin repeat 98.5 7.9E-08 1.7E-12 56.5 3.2 29 47-79 1-29 (30)
342 KOG0782 Predicted diacylglycer 98.5 2.5E-07 5.4E-12 89.1 7.8 119 17-140 870-988 (1004)
343 PRK06921 hypothetical protein; 98.5 4E-07 8.7E-12 84.1 8.8 71 205-280 116-188 (266)
344 PRK07132 DNA polymerase III su 98.5 2.8E-06 6.2E-11 79.4 14.3 128 205-354 17-160 (299)
345 KOG0506 Glutaminase (contains 98.5 1.1E-07 2.3E-12 89.9 4.7 91 12-107 505-595 (622)
346 KOG0818 GTPase-activating prot 98.5 4.9E-07 1.1E-11 85.9 9.0 87 51-142 136-223 (669)
347 PF01695 IstB_IS21: IstB-like 98.5 2.8E-07 6E-12 79.8 6.7 73 205-281 46-120 (178)
348 PRK05818 DNA polymerase III su 98.5 1E-06 2.2E-11 79.6 9.9 121 204-343 5-147 (261)
349 PF00023 Ank: Ankyrin repeat H 98.5 2E-07 4.3E-12 56.4 3.6 33 47-83 1-33 (33)
350 KOG0522 Ankyrin repeat protein 98.5 5.5E-07 1.2E-11 86.6 8.4 89 51-142 23-111 (560)
351 KOG0705 GTPase-activating prot 98.5 4.4E-07 9.5E-12 87.7 7.6 91 15-110 626-719 (749)
352 PRK07276 DNA polymerase III su 98.4 2.6E-06 5.7E-11 78.9 12.4 130 204-353 22-172 (290)
353 PRK09183 transposase/IS protei 98.4 6.5E-07 1.4E-11 82.5 8.3 75 205-283 101-178 (259)
354 COG1484 DnaC DNA replication p 98.4 1.8E-06 3.9E-11 79.2 10.2 75 205-283 104-181 (254)
355 PRK08939 primosomal protein Dn 98.4 1.3E-06 2.8E-11 82.2 9.4 74 205-282 155-230 (306)
356 PF12775 AAA_7: P-loop contain 98.4 3.8E-07 8.3E-12 84.4 5.5 138 205-359 32-196 (272)
357 KOG0522 Ankyrin repeat protein 98.4 1.1E-06 2.5E-11 84.5 7.7 87 15-106 22-109 (560)
358 PF06309 Torsin: Torsin; Inte 98.3 4.5E-06 9.8E-11 66.4 9.2 64 162-234 17-81 (127)
359 KOG0783 Uncharacterized conser 98.3 4.6E-07 1E-11 91.1 4.4 78 12-94 51-128 (1267)
360 KOG0705 GTPase-activating prot 98.3 1.2E-06 2.6E-11 84.8 6.7 92 50-144 626-719 (749)
361 KOG2228 Origin recognition com 98.3 7.6E-05 1.7E-09 68.8 17.5 160 171-357 26-220 (408)
362 cd01120 RecA-like_NTPases RecA 98.2 4.2E-06 9.1E-11 71.4 8.2 104 209-316 2-135 (165)
363 KOG1970 Checkpoint RAD17-RFC c 98.2 4E-05 8.7E-10 75.0 15.3 178 207-399 111-317 (634)
364 PHA00729 NTP-binding motif con 98.2 4.3E-06 9.3E-11 74.2 8.1 26 206-231 17-42 (226)
365 PRK14700 recombination factor 98.2 3.2E-06 6.9E-11 77.4 7.3 113 302-439 2-114 (300)
366 KOG0481 DNA replication licens 98.2 2E-05 4.3E-10 76.1 12.1 57 170-230 332-388 (729)
367 KOG0520 Uncharacterized conser 98.2 2.2E-06 4.7E-11 89.1 5.7 126 10-141 571-702 (975)
368 COG1618 Predicted nucleotide k 98.1 3.4E-05 7.4E-10 63.6 10.8 30 205-234 4-33 (179)
369 KOG0782 Predicted diacylglycer 98.1 4.2E-06 9.1E-11 80.9 6.2 92 11-107 897-989 (1004)
370 PF12774 AAA_6: Hydrolytic ATP 98.1 5.3E-06 1.2E-10 74.7 5.9 65 206-283 32-98 (231)
371 PF00910 RNA_helicase: RNA hel 98.1 1.3E-05 2.9E-10 63.2 7.3 82 209-311 1-84 (107)
372 PF13604 AAA_30: AAA domain; P 98.1 1.4E-05 2.9E-10 70.6 8.1 101 206-321 18-134 (196)
373 PF07693 KAP_NTPase: KAP famil 98.1 0.00017 3.7E-09 69.2 16.2 129 270-407 173-318 (325)
374 COG3267 ExeA Type II secretory 98.0 0.00017 3.8E-09 64.2 13.2 173 206-407 51-249 (269)
375 KOG0511 Ankyrin repeat protein 98.0 2.1E-05 4.5E-10 72.8 7.6 69 50-122 38-106 (516)
376 PRK00771 signal recognition pa 98.0 0.00023 5.1E-09 70.1 15.4 31 204-234 93-123 (437)
377 KOG2543 Origin recognition com 97.9 0.0008 1.7E-08 63.3 17.3 131 204-354 28-191 (438)
378 PF01745 IPT: Isopentenyl tran 97.9 0.0001 2.3E-09 63.9 10.7 136 208-359 3-142 (233)
379 PRK04296 thymidine kinase; Pro 97.9 2.8E-05 6.2E-10 68.2 7.5 26 208-233 4-29 (190)
380 KOG1968 Replication factor C, 97.9 2.7E-05 5.9E-10 82.2 8.5 192 169-394 320-528 (871)
381 COG1067 LonB Predicted ATP-dep 97.9 5.6E-05 1.2E-09 77.4 10.4 152 262-439 218-398 (647)
382 cd01124 KaiC KaiC is a circadi 97.9 5.5E-05 1.2E-09 66.2 8.6 24 209-232 2-25 (187)
383 KOG0521 Putative GTPase activa 97.9 9.9E-06 2.1E-10 84.8 4.4 88 47-139 655-742 (785)
384 PLN03210 Resistant to P. syrin 97.9 0.00029 6.4E-09 78.9 16.0 51 168-232 183-233 (1153)
385 PF00931 NB-ARC: NB-ARC domain 97.9 0.00019 4.2E-09 67.5 12.5 134 204-359 17-173 (287)
386 KOG0482 DNA replication licens 97.9 0.00012 2.5E-09 70.9 10.7 100 170-283 343-453 (721)
387 TIGR02688 conserved hypothetic 97.9 3.8E-05 8.2E-10 74.0 7.5 82 205-307 208-291 (449)
388 KOG0477 DNA replication licens 97.8 0.0002 4.4E-09 70.9 11.8 104 170-283 450-560 (854)
389 PF12780 AAA_8: P-loop contain 97.8 0.00015 3.4E-09 66.8 10.1 165 171-359 10-213 (268)
390 TIGR01425 SRP54_euk signal rec 97.8 0.0025 5.5E-08 62.4 18.8 31 204-234 98-128 (429)
391 PF03969 AFG1_ATPase: AFG1-lik 97.8 0.00012 2.5E-09 70.6 9.3 110 203-322 59-172 (362)
392 PRK10536 hypothetical protein; 97.8 0.0001 2.2E-09 66.6 8.3 24 207-230 75-98 (262)
393 COG0563 Adk Adenylate kinase a 97.8 0.00013 2.8E-09 63.0 8.6 23 208-230 2-24 (178)
394 TIGR01618 phage_P_loop phage n 97.8 7.7E-05 1.7E-09 66.4 7.4 23 205-227 11-33 (220)
395 KOG2384 Major histocompatibili 97.8 9.1E-05 2E-09 62.3 7.0 70 37-111 2-72 (223)
396 PF14516 AAA_35: AAA-like doma 97.8 0.0005 1.1E-08 65.9 13.2 139 205-355 30-213 (331)
397 KOG3347 Predicted nucleotide k 97.8 4.4E-05 9.6E-10 61.9 4.9 28 205-232 6-33 (176)
398 KOG3609 Receptor-activated Ca2 97.7 5.7E-05 1.2E-09 77.2 6.6 120 13-145 25-157 (822)
399 KOG2384 Major histocompatibili 97.7 4.6E-05 1E-09 64.0 4.9 67 75-142 2-69 (223)
400 PRK15455 PrkA family serine pr 97.7 5.9E-05 1.3E-09 75.3 6.3 56 167-232 74-129 (644)
401 PRK10867 signal recognition pa 97.7 0.00042 9.2E-09 68.2 12.3 30 204-233 98-127 (433)
402 PRK12723 flagellar biosynthesi 97.7 0.0032 6.9E-08 61.2 17.9 78 205-282 173-267 (388)
403 PRK06581 DNA polymerase III su 97.7 0.00066 1.4E-08 60.4 11.6 135 206-359 15-164 (263)
404 PHA02774 E1; Provisional 97.7 0.0011 2.4E-08 66.4 14.3 25 207-231 435-459 (613)
405 PF13207 AAA_17: AAA domain; P 97.6 3.6E-05 7.9E-10 62.2 3.1 24 209-232 2-25 (121)
406 cd03283 ABC_MutS-like MutS-lik 97.6 0.00064 1.4E-08 60.1 11.3 24 207-230 26-49 (199)
407 PRK08118 topology modulation p 97.6 9.8E-05 2.1E-09 63.3 5.9 26 207-232 2-27 (167)
408 PF03266 NTPase_1: NTPase; In 97.6 0.00014 3E-09 62.3 6.6 25 208-232 1-25 (168)
409 PRK13695 putative NTPase; Prov 97.6 0.00094 2E-08 57.7 11.9 25 208-232 2-26 (174)
410 COG5271 MDN1 AAA ATPase contai 97.6 0.00044 9.6E-09 75.6 11.2 133 206-357 1543-1704(4600)
411 TIGR00959 ffh signal recogniti 97.6 0.0015 3.3E-08 64.2 14.2 28 204-231 97-124 (428)
412 PRK14722 flhF flagellar biosyn 97.6 0.0012 2.6E-08 63.6 13.2 27 205-231 136-162 (374)
413 PF05707 Zot: Zonular occluden 97.6 0.00014 3.1E-09 64.0 6.2 19 269-287 79-97 (193)
414 KOG0511 Ankyrin repeat protein 97.6 0.00019 4.1E-09 66.6 6.7 55 14-70 37-91 (516)
415 COG5271 MDN1 AAA ATPase contai 97.6 0.00043 9.3E-09 75.7 10.1 133 205-356 887-1047(4600)
416 TIGR02237 recomb_radB DNA repa 97.6 0.00036 7.8E-09 62.3 8.5 38 206-247 12-49 (209)
417 PF02562 PhoH: PhoH-like prote 97.6 0.00043 9.4E-09 60.8 8.7 26 207-232 20-45 (205)
418 COG1373 Predicted ATPase (AAA+ 97.5 0.0015 3.2E-08 64.2 13.3 119 208-350 39-161 (398)
419 PRK07261 topology modulation p 97.5 0.00019 4.1E-09 61.9 6.2 101 208-357 2-102 (171)
420 PF09848 DUF2075: Uncharacteri 97.5 0.00022 4.7E-09 69.2 7.3 23 208-230 3-25 (352)
421 PRK14532 adenylate kinase; Pro 97.5 0.00049 1.1E-08 60.3 8.9 36 208-252 2-37 (188)
422 COG3854 SpoIIIAA ncharacterize 97.5 0.00085 1.8E-08 58.8 9.8 75 204-278 135-227 (308)
423 PRK00131 aroK shikimate kinase 97.5 8.6E-05 1.9E-09 64.1 3.8 28 205-232 3-30 (175)
424 PTZ00088 adenylate kinase 1; P 97.5 0.00065 1.4E-08 61.3 9.4 28 205-232 5-32 (229)
425 PLN02200 adenylate kinase fami 97.5 0.00033 7.1E-09 63.5 7.4 39 203-250 40-78 (234)
426 PRK09376 rho transcription ter 97.5 0.00035 7.6E-09 66.9 7.6 29 204-232 167-195 (416)
427 PHA02624 large T antigen; Prov 97.5 0.0016 3.4E-08 65.7 12.4 56 207-279 432-488 (647)
428 cd01121 Sms Sms (bacterial rad 97.5 0.00084 1.8E-08 65.1 10.3 106 205-314 81-206 (372)
429 PF10923 DUF2791: P-loop Domai 97.5 0.024 5.2E-07 55.4 20.2 109 270-387 240-372 (416)
430 PF13191 AAA_16: AAA ATPase do 97.5 0.00016 3.5E-09 63.1 4.9 62 171-249 2-63 (185)
431 PRK11823 DNA repair protein Ra 97.5 0.00085 1.8E-08 66.9 10.6 106 205-314 79-204 (446)
432 PF08303 tRNA_lig_kinase: tRNA 97.4 0.0011 2.3E-08 55.4 8.8 129 212-360 5-147 (168)
433 cd01131 PilT Pilus retraction 97.4 0.00083 1.8E-08 59.4 8.7 25 208-232 3-27 (198)
434 PF13245 AAA_19: Part of AAA d 97.4 0.00037 8.1E-09 50.9 5.3 26 206-231 10-36 (76)
435 TIGR01448 recD_rel helicase, p 97.4 0.00079 1.7E-08 71.2 9.7 95 206-313 338-450 (720)
436 PRK06762 hypothetical protein; 97.4 0.00037 7.9E-09 59.8 6.0 26 206-231 2-27 (166)
437 PRK00625 shikimate kinase; Pro 97.4 0.00015 3.2E-09 62.4 3.5 25 208-232 2-26 (173)
438 TIGR00150 HI0065_YjeE ATPase, 97.4 0.00059 1.3E-08 55.5 6.7 39 205-243 21-59 (133)
439 PRK13947 shikimate kinase; Pro 97.3 0.00019 4.2E-09 61.8 3.7 25 208-232 3-27 (171)
440 PLN02674 adenylate kinase 97.3 0.00058 1.3E-08 61.9 6.8 28 204-231 29-56 (244)
441 cd01128 rho_factor Transcripti 97.3 0.00033 7.1E-09 63.9 5.2 29 204-232 14-42 (249)
442 KOG0521 Putative GTPase activa 97.3 0.00021 4.6E-09 75.0 4.5 89 11-105 654-742 (785)
443 PRK03839 putative kinase; Prov 97.3 0.00019 4.1E-09 62.5 3.4 25 208-232 2-26 (180)
444 PF01583 APS_kinase: Adenylyls 97.3 0.0009 1.9E-08 56.1 7.0 41 207-251 3-43 (156)
445 cd00046 DEXDc DEAD-like helica 97.3 0.0013 2.9E-08 53.8 8.1 25 208-232 2-26 (144)
446 PRK13808 adenylate kinase; Pro 97.3 0.0021 4.6E-08 60.8 10.1 25 208-232 2-26 (333)
447 PF00448 SRP54: SRP54-type pro 97.3 0.004 8.7E-08 54.8 11.3 28 206-233 1-28 (196)
448 PLN02459 probable adenylate ki 97.2 0.0015 3.3E-08 59.5 8.7 27 205-231 28-54 (261)
449 COG1102 Cmk Cytidylate kinase 97.2 0.00023 5.1E-09 58.8 3.0 25 208-232 2-26 (179)
450 PRK13948 shikimate kinase; Pro 97.2 0.00039 8.4E-09 60.3 4.5 44 204-256 8-51 (182)
451 PRK14974 cell division protein 97.2 0.0042 9E-08 59.2 11.8 30 205-234 139-168 (336)
452 COG4619 ABC-type uncharacteriz 97.2 0.0015 3.1E-08 54.6 7.4 27 204-230 27-53 (223)
453 cd00464 SK Shikimate kinase (S 97.2 0.00029 6.2E-09 59.5 3.4 25 208-232 1-25 (154)
454 cd00544 CobU Adenosylcobinamid 97.2 0.0014 3.1E-08 56.1 7.6 99 209-314 2-122 (169)
455 PRK14529 adenylate kinase; Pro 97.2 0.0015 3.3E-08 58.4 8.0 25 208-232 2-26 (223)
456 COG0703 AroK Shikimate kinase 97.2 0.00025 5.3E-09 60.0 2.8 26 207-232 3-28 (172)
457 COG4088 Predicted nucleotide k 97.2 0.0021 4.6E-08 55.4 8.3 25 208-232 3-27 (261)
458 PF13671 AAA_33: AAA domain; P 97.2 0.00021 4.6E-09 59.5 2.3 23 209-231 2-24 (143)
459 PF13238 AAA_18: AAA domain; P 97.2 0.0003 6.5E-09 57.2 3.2 22 209-230 1-22 (129)
460 cd03243 ABC_MutS_homologs The 97.2 0.0044 9.5E-08 55.0 10.9 24 206-229 29-52 (202)
461 PRK11889 flhF flagellar biosyn 97.2 0.0058 1.3E-07 58.8 12.1 29 205-233 240-268 (436)
462 PRK05800 cobU adenosylcobinami 97.2 0.0011 2.4E-08 56.9 6.7 94 208-308 3-116 (170)
463 TIGR03574 selen_PSTK L-seryl-t 97.2 0.0016 3.6E-08 59.8 8.3 25 209-233 2-26 (249)
464 cd01129 PulE-GspE PulE/GspE Th 97.2 0.0077 1.7E-07 55.7 12.7 27 205-231 79-105 (264)
465 TIGR02768 TraA_Ti Ti-type conj 97.2 0.0013 2.8E-08 69.8 8.6 73 207-283 369-453 (744)
466 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.00035 7.5E-09 61.0 3.6 34 209-251 2-35 (183)
467 PRK09361 radB DNA repair and r 97.2 0.0027 5.8E-08 57.4 9.5 38 206-247 23-60 (225)
468 TIGR02012 tigrfam_recA protein 97.2 0.0026 5.6E-08 60.0 9.5 106 206-315 55-189 (321)
469 PF06745 KaiC: KaiC; InterPro 97.2 0.0029 6.2E-08 57.3 9.6 104 204-314 17-157 (226)
470 PRK05973 replicative DNA helic 97.2 0.011 2.4E-07 53.4 13.2 29 204-232 62-90 (237)
471 PRK13949 shikimate kinase; Pro 97.1 0.00032 6.9E-09 60.3 3.0 26 207-232 2-27 (169)
472 PRK08533 flagellar accessory p 97.1 0.0035 7.7E-08 56.7 9.8 26 205-230 23-48 (230)
473 PRK06696 uridine kinase; Valid 97.1 0.0014 3.1E-08 59.1 7.1 42 204-249 20-61 (223)
474 cd02019 NK Nucleoside/nucleoti 97.1 0.00048 1E-08 49.4 3.2 22 209-230 2-23 (69)
475 PLN02840 tRNA dimethylallyltra 97.1 0.00089 1.9E-08 65.1 5.9 98 206-316 21-119 (421)
476 PRK06067 flagellar accessory p 97.1 0.0038 8.2E-08 56.8 9.8 27 204-230 23-49 (234)
477 cd03280 ABC_MutS2 MutS2 homolo 97.1 0.0043 9.4E-08 54.9 9.8 21 208-228 30-50 (200)
478 PRK05703 flhF flagellar biosyn 97.1 0.024 5.1E-07 56.2 15.9 72 206-280 221-310 (424)
479 COG1116 TauB ABC-type nitrate/ 97.1 0.0015 3.3E-08 58.3 6.7 29 203-231 26-54 (248)
480 TIGR00767 rho transcription te 97.1 0.0017 3.6E-08 62.6 7.5 29 204-232 166-194 (415)
481 cd02027 APSK Adenosine 5'-phos 97.1 0.0019 4.1E-08 54.2 7.0 24 209-232 2-25 (149)
482 cd00227 CPT Chloramphenicol (C 97.1 0.00043 9.3E-09 59.9 3.2 26 207-232 3-28 (175)
483 PRK06217 hypothetical protein; 97.1 0.00046 9.9E-09 60.2 3.3 26 207-232 2-27 (183)
484 PRK06547 hypothetical protein; 97.0 0.00049 1.1E-08 59.2 3.3 29 204-232 13-41 (172)
485 cd03281 ABC_MSH5_euk MutS5 hom 97.0 0.0079 1.7E-07 53.8 11.2 23 207-229 30-52 (213)
486 PRK14737 gmk guanylate kinase; 97.0 0.00089 1.9E-08 58.4 4.8 26 205-230 3-28 (186)
487 cd03282 ABC_MSH4_euk MutS4 hom 97.0 0.0067 1.5E-07 53.8 10.4 25 206-230 29-53 (204)
488 COG0194 Gmk Guanylate kinase [ 97.0 0.0018 3.8E-08 55.2 6.3 25 206-230 4-28 (191)
489 TIGR00416 sms DNA repair prote 97.0 0.0051 1.1E-07 61.4 10.6 106 205-314 93-218 (454)
490 PRK13889 conjugal transfer rel 97.0 0.0029 6.2E-08 68.5 9.3 92 207-313 363-468 (988)
491 TIGR00455 apsK adenylylsulfate 97.0 0.0096 2.1E-07 51.9 11.2 41 205-249 17-57 (184)
492 TIGR02858 spore_III_AA stage I 97.0 0.0019 4.2E-08 59.6 7.0 26 206-231 111-136 (270)
493 PRK00279 adk adenylate kinase; 97.0 0.0024 5.2E-08 57.3 7.5 25 208-232 2-26 (215)
494 COG1936 Predicted nucleotide k 97.0 0.00047 1E-08 57.8 2.6 24 208-232 2-25 (180)
495 cd02021 GntK Gluconate kinase 97.0 0.00049 1.1E-08 57.9 2.7 23 209-231 2-24 (150)
496 PRK14531 adenylate kinase; Pro 97.0 0.0007 1.5E-08 59.1 3.7 26 207-232 3-28 (183)
497 smart00487 DEXDc DEAD-like hel 97.0 0.0022 4.8E-08 56.0 7.0 25 207-231 25-50 (201)
498 COG4178 ABC-type uncharacteriz 97.0 0.0032 7E-08 63.8 8.7 28 203-230 416-443 (604)
499 COG0541 Ffh Signal recognition 97.0 0.16 3.5E-06 49.2 19.6 215 203-444 97-343 (451)
500 PF05272 VirE: Virulence-assoc 97.0 0.0016 3.6E-08 57.2 5.9 27 203-229 49-75 (198)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-41 Score=306.53 Aligned_cols=237 Identities=22% Similarity=0.307 Sum_probs=206.8
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316 164 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 243 (445)
Q Consensus 164 ~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~ 243 (445)
....++++.|.++.+++|++ .+.+|+.+++++..++..+|.+||||||||||||++||++|+..+. .|+.
T Consensus 146 PdvtY~dIGGL~~Qi~EirE---~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A-------tFIr 215 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIRE---VVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA-------TFIR 215 (406)
T ss_pred CCCChhhccCHHHHHHHHHH---HhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc-------eEEE
Confidence 34578899999988888888 6889999999999999999999999999999999999999999887 9999
Q ss_pred eecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhh---ccC----CcEEEEE
Q 013316 244 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG----GKVVVIF 313 (445)
Q Consensus 244 ~~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~---~~~----~~~~~i~ 313 (445)
+..|.|+.+|+|+.+..++++|.-|+ +|||||||||++..+|.+++++...++|..++++ ||+ +++-||+
T Consensus 216 vvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ 295 (406)
T COG1222 216 VVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIM 295 (406)
T ss_pred eccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEE
Confidence 99999999999999999999998884 5999999999999999887777777887765554 554 7899999
Q ss_pred ecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhh
Q 013316 314 AGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 391 (445)
Q Consensus 314 a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 391 (445)
|||+.++. ||+|+| |||+.|+||.|+.+.+.+||+.+.+++ .+.++++.+.++.....+
T Consensus 296 ATNR~D~L-----DPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM---------~l~~dvd~e~la~~~~g~----- 356 (406)
T COG1222 296 ATNRPDIL-----DPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM---------NLADDVDLELLARLTEGF----- 356 (406)
T ss_pred ecCCcccc-----ChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc---------cCccCcCHHHHHHhcCCC-----
Confidence 99887775 999999 999999999999999999999999998 568889999888776554
Q ss_pred hcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHh
Q 013316 392 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 442 (445)
Q Consensus 392 ~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 442 (445)
||+++++++..| +..+-.+....||.+||.+|++++..
T Consensus 357 ----sGAdlkaictEA---------Gm~AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 357 ----SGADLKAICTEA---------GMFAIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred ----chHHHHHHHHHH---------hHHHHHhccCeecHHHHHHHHHHHHh
Confidence 488899999887 22233456678999999999998754
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-36 Score=294.79 Aligned_cols=239 Identities=23% Similarity=0.279 Sum_probs=209.7
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316 164 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 243 (445)
Q Consensus 164 ~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~ 243 (445)
....|++|.|++++|..|++ .+.+|.++++.+..++..+|.+||||||||||||++||++|.+++. +|+.
T Consensus 429 p~v~W~dIGGlE~lK~elq~---~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~-------nFls 498 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQ---AVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM-------NFLS 498 (693)
T ss_pred CCCChhhccCHHHHHHHHHH---HHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC-------Ceee
Confidence 35679999999999999998 6788899999999999999999999999999999999999999988 9999
Q ss_pred eecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----CcEEEEEecC
Q 013316 244 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGY 316 (445)
Q Consensus 244 ~~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~i~a~~ 316 (445)
+.+.++.++|+|++++.++++|+.|+ ++|||+||||++...|++++++...+++++||..||+ .+++||+|||
T Consensus 499 vkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATN 578 (693)
T KOG0730|consen 499 VKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATN 578 (693)
T ss_pred ccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccC
Confidence 99999999999999999999998874 5999999999999999876678888999999999997 5788999988
Q ss_pred chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316 317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 394 (445)
Q Consensus 317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 394 (445)
+.+.. |++|.| |||+.|++|.|+.+.+.+|++.+++++ .+.++++.+.++..+..++
T Consensus 579 Rpd~I-----D~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm---------p~~~~vdl~~La~~T~g~S------- 637 (693)
T KOG0730|consen 579 RPDMI-----DPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM---------PFSEDVDLEELAQATEGYS------- 637 (693)
T ss_pred Chhhc-----CHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC---------CCCccccHHHHHHHhccCC-------
Confidence 76654 999999 999999999999999999999999987 6678889999998888777
Q ss_pred cCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHh
Q 013316 395 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 442 (445)
Q Consensus 395 ~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 442 (445)
|+++.+++++|...... -.. +-..|+.+||++|++..++
T Consensus 638 --GAel~~lCq~A~~~a~~-e~i------~a~~i~~~hf~~al~~~r~ 676 (693)
T KOG0730|consen 638 --GAEIVAVCQEAALLALR-ESI------EATEITWQHFEEALKAVRP 676 (693)
T ss_pred --hHHHHHHHHHHHHHHHH-Hhc------ccccccHHHHHHHHHhhcc
Confidence 78888999888443222 111 1347999999999987654
No 3
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=100.00 E-value=1e-34 Score=270.04 Aligned_cols=262 Identities=37% Similarity=0.585 Sum_probs=215.5
Q ss_pred HHHHHHHHH-hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC
Q 013316 161 MDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 239 (445)
Q Consensus 161 ~~~~~~~~~-~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~ 239 (445)
+.+....++ +++|++++|++|.++......+..+...+.... .+..+++|+||||||||++|+++++.+...+....+
T Consensus 13 ~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~-~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~ 91 (284)
T TIGR02880 13 ITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASA-APTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKG 91 (284)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcC-CCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccc
Confidence 445556666 599999999999999888877777777776543 345689999999999999999999999887777778
Q ss_pred CeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCc
Q 013316 240 RVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYS 317 (445)
Q Consensus 240 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~ 317 (445)
+|+.++++++.+.|+|+++..+.++|+++.++||||||+|.+.+.++ +.+.+.++++.|++.|+. .++++|++++.
T Consensus 92 ~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~ 169 (284)
T TIGR02880 92 HLVSVTRDDLVGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQRDDLVVILAGYK 169 (284)
T ss_pred eEEEecHHHHhHhhcccchHHHHHHHHHccCcEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 99999999999999999988899999999999999999999975432 245667889999999976 47899999998
Q ss_pred hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHH-HHhhhcccC
Q 013316 318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET-TEKQRREMN 396 (445)
Q Consensus 318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~n 396 (445)
+..+.+...+|+|++||+..|.||+|+.+|+.+|+++++++.. ..++.+++..+..+.. .....++||
T Consensus 170 ~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~-----------~~l~~~a~~~L~~~l~~~~~~~~~GN 238 (284)
T TIGR02880 170 DRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQ-----------YRFSAEAEEAFADYIALRRTQPHFAN 238 (284)
T ss_pred HHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhc-----------cccCHHHHHHHHHHHHHhCCCCCCCh
Confidence 8788788889999999999999999999999999999998753 2344556554443311 011246999
Q ss_pred chhhHHHHHHHHHhhhhhhccC---CCChhhhhhccHHHHHHH
Q 013316 397 GGLVDPMLVNARENLDLRLSFD---CLDTDELRTITLEDLEAG 436 (445)
Q Consensus 397 ~r~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~d~~~a 436 (445)
+|++++++++++..++.|+... ....+++.+|+.+|+.++
T Consensus 239 ~R~lrn~ve~~~~~~~~r~~~~~~~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 239 ARSIRNAIDRARLRQANRLFCDLDRVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCCCHHHHhCCCHHHHhhc
Confidence 9999999999999999998543 345688999999998754
No 4
>CHL00181 cbbX CbbX; Provisional
Probab=100.00 E-value=2.1e-34 Score=267.50 Aligned_cols=262 Identities=37% Similarity=0.601 Sum_probs=212.5
Q ss_pred HHHHHHHHH-hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC
Q 013316 161 MDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 239 (445)
Q Consensus 161 ~~~~~~~~~-~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~ 239 (445)
+.++...++ +++|++++|++|.+++..+.++..+...+... ..+..+++|+||||||||++|+++++.+...+.+..+
T Consensus 14 ~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~-~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~ 92 (287)
T CHL00181 14 IQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTS-SNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKG 92 (287)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCC
Confidence 455666676 69999999999999887777776677776643 2345689999999999999999999999888888888
Q ss_pred CeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCc
Q 013316 240 RVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYS 317 (445)
Q Consensus 240 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~ 317 (445)
+++.++++++.+.|+|+++.++.++|+++.++||||||+|.+.+.++ ..+++.++++.|+..|++ +.+++|++++.
T Consensus 93 ~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~ 170 (287)
T CHL00181 93 HLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQRDDLVVIFAGYK 170 (287)
T ss_pred ceEEecHHHHHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 99999999999999999988889999999999999999999975432 245677899999999976 56899999998
Q ss_pred hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHH-HhhhcccC
Q 013316 318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT-EKQRREMN 396 (445)
Q Consensus 318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~n 396 (445)
+....+...+|+|++||+..|.|++|+.+|+.+|+..++++.. +.++++ +...+...... ....+++|
T Consensus 171 ~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~-------~~l~~~----~~~~L~~~i~~~~~~~~~GN 239 (287)
T CHL00181 171 DRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQ-------YQLTPE----AEKALLDYIKKRMEQPLFAN 239 (287)
T ss_pred HHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhc-------CCCChh----HHHHHHHHHHHhCCCCCCcc
Confidence 8888888889999999999999999999999999999998753 233333 33333322111 11245799
Q ss_pred chhhHHHHHHHHHhhhhhhccC---CCChhhhhhccHHHHHHH
Q 013316 397 GGLVDPMLVNARENLDLRLSFD---CLDTDELRTITLEDLEAG 436 (445)
Q Consensus 397 ~r~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~d~~~a 436 (445)
+|+++++++++...++.|+... ....+++.+|+.+||.+.
T Consensus 240 aR~vrn~ve~~~~~~~~r~~~~~~~~~~~~~l~~~~~~d~~~~ 282 (287)
T CHL00181 240 ARSVRNALDRARMRQANRIFESGGRVLTKADLVTIEAEDILKS 282 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHhCCCHHHHhHH
Confidence 9999999999999999998554 234678999999999753
No 5
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=100.00 E-value=1.1e-33 Score=261.54 Aligned_cols=253 Identities=37% Similarity=0.562 Sum_probs=206.4
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
..+++++|++++|++|+++.........+...+.... ....+++|+||||||||++|+++|+.+...+.+..+++++++
T Consensus 3 ~~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~ 81 (261)
T TIGR02881 3 RELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTS-KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVE 81 (261)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEec
Confidence 4678899999999999999888877777777776543 345789999999999999999999999877777788999999
Q ss_pred cccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHH
Q 013316 246 RTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRV 323 (445)
Q Consensus 246 ~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~ 323 (445)
++++.+.|+|+++..+.++|+.+.++||||||||.|...+ +.++..+.++.|++.|++ +.+++|++++....+.+
T Consensus 82 ~~~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~---~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~ 158 (261)
T TIGR02881 82 RADLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGG---EKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYF 158 (261)
T ss_pred HHHhhhhhccchHHHHHHHHHhccCCEEEEechhhhccCC---ccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHH
Confidence 9999999999999999999999999999999999997522 234566888999999986 56788888888777777
Q ss_pred HhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHH---hhhcccCchhh
Q 013316 324 IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE---KQRREMNGGLV 400 (445)
Q Consensus 324 ~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~n~r~l 400 (445)
...+|+|++||+..|.||+|+.+|+.+|++.++.+.. ..++++++..+....... ....++|+|.+
T Consensus 159 ~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~-----------~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~ 227 (261)
T TIGR02881 159 LSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKERE-----------YKLTEEAKWKLREHLYKVDQLSSREFSNARYV 227 (261)
T ss_pred HhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcC-----------CccCHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence 7789999999999999999999999999999987631 234555655443332211 23457999999
Q ss_pred HHHHHHHHHhhhhhhccC-CCChhhhhhccHHHH
Q 013316 401 DPMLVNARENLDLRLSFD-CLDTDELRTITLEDL 433 (445)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~d~ 433 (445)
+|+++.|++.++.|+... ..+.++..+++.+||
T Consensus 228 ~n~~e~a~~~~~~r~~~~~~~~~~~~~~l~~~d~ 261 (261)
T TIGR02881 228 RNIIEKAIRRQAVRLLDKSDYSKEDLMLLKKEDL 261 (261)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHhccChhhC
Confidence 999999999999887543 345677888888875
No 6
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-35 Score=266.96 Aligned_cols=247 Identities=20% Similarity=0.247 Sum_probs=202.8
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
...|++|.|+.++|+-|++ .+.+|...++.+..+ ..+..+||++||||||||++|+++|.+++. .||.|
T Consensus 208 ~ikW~DIagl~~AK~lL~E---AVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~t-------TFFNV 276 (491)
T KOG0738|consen 208 NIKWDDIAGLHEAKKLLKE---AVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGT-------TFFNV 276 (491)
T ss_pred CcChHhhcchHHHHHHHHH---HHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcC-------eEEEe
Confidence 3568999999999999998 677888778777655 468899999999999999999999999987 99999
Q ss_pred ecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCC-CCchhHHHHHHHHHhhccC-------CcEEEEE
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKA-DDKDYGIEALEEIMSVMDG-------GKVVVIF 313 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~-~~~~~~~~~~~~ll~~~~~-------~~~~~i~ 313 (445)
+.+.+.++|.|++++.++=+|+-|+ +++|||||||+|+++|+. +.++.++++-++||.+||+ .++++|+
T Consensus 277 SsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVL 356 (491)
T KOG0738|consen 277 SSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVL 356 (491)
T ss_pred chhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEE
Confidence 9999999999999999999998884 699999999999998875 4689999999999999986 3678888
Q ss_pred ecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhc
Q 013316 314 AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 393 (445)
Q Consensus 314 a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 393 (445)
|.|+-+++. |.+|+|||...|++|.|+.+.|..+++..|... .+.+.+..+.+++.+.+|++.|+
T Consensus 357 AATN~PWdi----DEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~---------~~~~~~~~~~lae~~eGySGaDI-- 421 (491)
T KOG0738|consen 357 AATNFPWDI----DEALRRRLEKRIYIPLPDAEARSALIKILLRSV---------ELDDPVNLEDLAERSEGYSGADI-- 421 (491)
T ss_pred eccCCCcch----HHHHHHHHhhheeeeCCCHHHHHHHHHHhhccc---------cCCCCccHHHHHHHhcCCChHHH--
Confidence 888888874 999999999999999999999999999988875 55778888999999998885544
Q ss_pred ccCchhhHHHHHHHHHhhhh-hhccC-------CCChhhhhhccHHHHHHHHHHHHhcC
Q 013316 394 EMNGGLVDPMLVNARENLDL-RLSFD-------CLDTDELRTITLEDLEAGLKLLLRLG 444 (445)
Q Consensus 394 ~~n~r~l~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~i~~~d~~~a~~~~~~~~ 444 (445)
.+++..|--.... ++.+. ...++-...|+.+||+.|+++++|.+
T Consensus 422 -------~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSv 473 (491)
T KOG0738|consen 422 -------TNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSV 473 (491)
T ss_pred -------HHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCC
Confidence 4444433221111 11111 11122224699999999999988764
No 7
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-34 Score=272.43 Aligned_cols=249 Identities=22% Similarity=0.309 Sum_probs=204.9
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316 164 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 243 (445)
Q Consensus 164 ~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~ 243 (445)
....|+++.++++++.+|.. ++..|-++++.+..++...|.+||++||||||||++|+++|.+.+. +|+.
T Consensus 506 PdVtW~dIGaL~~vR~eL~~---aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~-------NFis 575 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNM---AILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGA-------NFIS 575 (802)
T ss_pred CCCChhhcccHHHHHHHHHH---HHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccC-------ceEe
Confidence 35679999999999998887 6777888888888888899999999999999999999999999888 9999
Q ss_pred eecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----CcEEEEEecC
Q 013316 244 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGY 316 (445)
Q Consensus 244 ~~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~i~a~~ 316 (445)
+....|.++|+|+++..++.+|..|+ +||||+||+|+|.++|+.+....+.+++++||..||+ ..+.||+||+
T Consensus 576 VKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATN 655 (802)
T KOG0733|consen 576 VKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATN 655 (802)
T ss_pred ecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecC
Confidence 99999999999999999999999885 5999999999999999988888899999999999986 5689999998
Q ss_pred chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHH--HHHHHhhh
Q 013316 317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE--KETTEKQR 392 (445)
Q Consensus 317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~ 392 (445)
+.+.. ||+++| |||..++++.|+.+|+.+||+...+... ..++++++.+.++.... .|+
T Consensus 656 RPDiI-----DpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k-------~pl~~dVdl~eia~~~~c~gft----- 718 (802)
T KOG0733|consen 656 RPDII-----DPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTK-------PPLSSDVDLDEIARNTKCEGFT----- 718 (802)
T ss_pred CCccc-----chhhcCCCccCceeeecCCCHHHHHHHHHHHhccCC-------CCCCcccCHHHHhhcccccCCc-----
Confidence 88775 999998 9999999999999999999999887421 36788899998886654 555
Q ss_pred cccCchhhHHHHHHHHH-hhhhhhcc-C-CCChhh----hhhccHHHHHHHHHHHHhc
Q 013316 393 REMNGGLVDPMLVNARE-NLDLRLSF-D-CLDTDE----LRTITLEDLEAGLKLLLRL 443 (445)
Q Consensus 393 ~~~n~r~l~~~~~~~~~-~~~~~~~~-~-~~~~~~----~~~i~~~d~~~a~~~~~~~ 443 (445)
|++|-.++.+|-- .+..++.. . ..++-. ...+|..||++|++.++|.
T Consensus 719 ----GADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pS 772 (802)
T KOG0733|consen 719 ----GADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPS 772 (802)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCC
Confidence 5555666654421 12222210 0 111111 3357888999999988764
No 8
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-33 Score=268.31 Aligned_cols=200 Identities=20% Similarity=0.275 Sum_probs=176.4
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
...|.+|.|.+....+|.+++...+ +++.+..++..+|.+|||+||||||||++|++||.+++. ||+.+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~----~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v-------Pf~~i 254 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIK----HPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV-------PFLSI 254 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhc----CchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC-------ceEee
Confidence 3468999999999999998776544 666667778889999999999999999999999999988 99999
Q ss_pred ecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--------CcEEEEE
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--------GKVVVIF 313 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--------~~~~~i~ 313 (445)
++..+++.+.|+++++++++|++|. +||+||||||++.|+|...+.++.++++.+|+..||+ ..++||+
T Consensus 255 sApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIg 334 (802)
T KOG0733|consen 255 SAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIG 334 (802)
T ss_pred cchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEe
Confidence 9999999999999999999999985 5999999999999999988899999999999999985 4588999
Q ss_pred ecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHH
Q 013316 314 AGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE 389 (445)
Q Consensus 314 a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 389 (445)
||++.+.. ||+||| |||+.|.+..|+..+|.+||+..++.. .++..++.+-++.++.+|.++
T Consensus 335 ATnRPDsl-----DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~l---------rl~g~~d~~qlA~lTPGfVGA 398 (802)
T KOG0733|consen 335 ATNRPDSL-----DPALRRAGRFDREICLGVPSETAREEILRIICRGL---------RLSGDFDFKQLAKLTPGFVGA 398 (802)
T ss_pred cCCCCccc-----CHHHhccccccceeeecCCchHHHHHHHHHHHhhC---------CCCCCcCHHHHHhcCCCccch
Confidence 98877654 999999 999999999999999999999998875 456677777777777666633
No 9
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1e-32 Score=238.70 Aligned_cols=230 Identities=25% Similarity=0.313 Sum_probs=181.2
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
...|++++||+++|+.-+-+.+++..|.+. +..-|.+||||||||||||++||++|.+.+. ||+.+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yLenPe~F-------g~WAPknVLFyGppGTGKTm~Akalane~kv-------p~l~v 182 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYLENPERF-------GDWAPKNVLFYGPPGTGKTMMAKALANEAKV-------PLLLV 182 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHhhChHHh-------cccCcceeEEECCCCccHHHHHHHHhcccCC-------ceEEe
Confidence 446889999999998877777777666443 3467899999999999999999999999877 99999
Q ss_pred ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCC-chhHHHHHHHHHhhccC----CcEEEEEecC
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD-KDYGIEALEEIMSVMDG----GKVVVIFAGY 316 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~-~~~~~~~~~~ll~~~~~----~~~~~i~a~~ 316 (445)
.++.++++++|+....+..+++.| .+||+||||+|.++-.|...+ ...-.+++|.||..||+ ..++.|+||+
T Consensus 183 kat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN 262 (368)
T COG1223 183 KATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATN 262 (368)
T ss_pred chHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecC
Confidence 999999999999999999999776 469999999999987654221 22234889999999986 4588899988
Q ss_pred chhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccC
Q 013316 317 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 396 (445)
Q Consensus 317 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n 396 (445)
+.... ||++|+||...|+|..|+.+|+.+|++.+++++ .+..++..+.+.+...+.+
T Consensus 263 ~p~~L-----D~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~---------Plpv~~~~~~~~~~t~g~S--------- 319 (368)
T COG1223 263 RPELL-----DPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF---------PLPVDADLRYLAAKTKGMS--------- 319 (368)
T ss_pred Chhhc-----CHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC---------CCccccCHHHHHHHhCCCC---------
Confidence 76654 999999999999999999999999999999986 5566677777777766655
Q ss_pred chhhHHH-HHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316 397 GGLVDPM-LVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440 (445)
Q Consensus 397 ~r~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 440 (445)
+|+++.- +..| ..+. -.++...|+.+|++.|+++.
T Consensus 320 gRdikekvlK~a----Lh~A-----i~ed~e~v~~edie~al~k~ 355 (368)
T COG1223 320 GRDIKEKVLKTA----LHRA-----IAEDREKVEREDIEKALKKE 355 (368)
T ss_pred chhHHHHHHHHH----HHHH-----HHhchhhhhHHHHHHHHHhh
Confidence 4443322 2222 1111 11244479999999999863
No 10
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-32 Score=237.42 Aligned_cols=234 Identities=21% Similarity=0.286 Sum_probs=189.9
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.++-+.|.+...+++++ ...+|-.+++++..++...|.++|+|||||||||.+||++|+...+ .|+.++.
T Consensus 145 tYeMiGgLd~QIkeIkE---VIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c-------~firvsg 214 (404)
T KOG0728|consen 145 TYEMIGGLDKQIKEIKE---VIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC-------TFIRVSG 214 (404)
T ss_pred HHHHhccHHHHHHHHHH---HHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcce-------EEEEech
Confidence 45558888877777776 5667888999999999999999999999999999999999999888 9999999
Q ss_pred ccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHH---hhccC----CcEEEEEecC
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM---SVMDG----GKVVVIFAGY 316 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll---~~~~~----~~~~~i~a~~ 316 (445)
|.++.+|+|+....++.+|--| .++|+|.||||++.++|..++.....++|..+| .++|+ .++-+|+||+
T Consensus 215 selvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatn 294 (404)
T KOG0728|consen 215 SELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN 294 (404)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecc
Confidence 9999999999999999998655 569999999999999887655445556666544 44554 6799999988
Q ss_pred chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316 317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 394 (445)
Q Consensus 317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 394 (445)
+-++. ||+|++ |+|+.|+||+|+.+.+.+|++.+-+++ .+...++...+++.+.+.
T Consensus 295 ridil-----d~allrpgridrkiefp~p~e~ar~~ilkihsrkm---------nl~rgi~l~kiaekm~ga-------- 352 (404)
T KOG0728|consen 295 RIDIL-----DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM---------NLTRGINLRKIAEKMPGA-------- 352 (404)
T ss_pred ccccc-----cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh---------chhcccCHHHHHHhCCCC--------
Confidence 76654 899998 999999999999999999999988876 445666666666555443
Q ss_pred cCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHh
Q 013316 395 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 442 (445)
Q Consensus 395 ~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 442 (445)
.+.+++.++..| +..+-.+.+.-+|+|||+-|+.++..
T Consensus 353 -sgaevk~vctea---------gm~alrerrvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 353 -SGAEVKGVCTEA---------GMYALRERRVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred -ccchhhhhhhhh---------hHHHHHHhhccccHHHHHHHHHHHHh
Confidence 377888888877 22333456678999999999887643
No 11
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=7.4e-33 Score=238.63 Aligned_cols=234 Identities=20% Similarity=0.286 Sum_probs=194.3
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
...+.++.|.+-.|+++++ .+.+|+.+.+++.+++..+|.+||+|||||||||++|+++|+.... .|+.+
T Consensus 151 dvsy~diggld~qkqeire---avelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a-------~firv 220 (408)
T KOG0727|consen 151 DVSYADIGGLDVQKQEIRE---AVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA-------AFIRV 220 (408)
T ss_pred CccccccccchhhHHHHHH---HHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccch-------heeee
Confidence 4567789999999999998 6788999999999999999999999999999999999999998766 89999
Q ss_pred ecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHH---HHHhhccC----CcEEEEEe
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALE---EIMSVMDG----GKVVVIFA 314 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~---~ll~~~~~----~~~~~i~a 314 (445)
..|.++.+|.|+.+..++++|+.|+ ++|+||||||+++.+|-+.+....++++. +||.+|++ .++-+|+|
T Consensus 221 vgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvima 300 (408)
T KOG0727|consen 221 VGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMA 300 (408)
T ss_pred ccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEe
Confidence 9999999999999999999998774 59999999999999997766666666555 55666665 46899999
Q ss_pred cCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316 315 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 392 (445)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 392 (445)
|++.++. ||+|++ |+|++|+||.|+..+.+.++....+++ .++++++.+.+...-.
T Consensus 301 tnradtl-----dpallrpgrldrkiefplpdrrqkrlvf~titskm---------~ls~~vdle~~v~rpd-------- 358 (408)
T KOG0727|consen 301 TNRADTL-----DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKM---------NLSDEVDLEDLVARPD-------- 358 (408)
T ss_pred cCccccc-----CHhhcCCccccccccCCCCchhhhhhhHHhhhhcc---------cCCcccCHHHHhcCcc--------
Confidence 9988776 999998 999999999999999999999999987 5677877776553322
Q ss_pred cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316 393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440 (445)
Q Consensus 393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 440 (445)
...+.++..+++.| +..+-.+++..|...||+++.+..
T Consensus 359 -kis~adi~aicqea---------gm~avr~nryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 359 -KISGADINAICQEA---------GMLAVRENRYVVLQKDFEKAYKTV 396 (408)
T ss_pred -ccchhhHHHHHHHH---------hHHHHHhcceeeeHHHHHHHHHhh
Confidence 23466677777766 222234456689999999988753
No 12
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.6e-32 Score=268.88 Aligned_cols=246 Identities=21% Similarity=0.265 Sum_probs=193.3
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
...|+++.|.+++|..|.+ .+.+|+.+++++-. +.+...+||||||||||||.+|+++|.++.- .|+.+
T Consensus 668 nV~WdDVGGLeevK~eIld---TIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSV 736 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILD---TIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSV 736 (953)
T ss_pred ccchhcccCHHHHHHHHHH---HhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhcee-------eEEee
Confidence 5679999999999999998 56778888887653 3456789999999999999999999999887 99999
Q ss_pred ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCC--CCCchhHHHHHHHHHhhccC------CcEEEEE
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQK--ADDKDYGIEALEEIMSVMDG------GKVVVIF 313 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~--~~~~~~~~~~~~~ll~~~~~------~~~~~i~ 313 (445)
...+|...|+|++++++|++|++| .+||||+||+|+++|+|+ ++++..-.+++++||..||+ ..++||+
T Consensus 737 KGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViG 816 (953)
T KOG0736|consen 737 KGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIG 816 (953)
T ss_pred cCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEe
Confidence 999999999999999999999887 469999999999999887 34566777999999999986 4689999
Q ss_pred ecCchhHHHHHhhCccccc--ccccceeCCCCC-HHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHh
Q 013316 314 AGYSEPMKRVIASNEGFCR--RVTKFFHFNDFN-SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEK 390 (445)
Q Consensus 314 a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~-~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 390 (445)
||++.+.. ||+|+| |||+.+++.+.+ .+....+++...++. +++++++...+++.+....
T Consensus 817 ATNRPDLL-----DpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkF---------kLdedVdL~eiAk~cp~~~--- 879 (953)
T KOG0736|consen 817 ATNRPDLL-----DPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKF---------KLDEDVDLVEIAKKCPPNM--- 879 (953)
T ss_pred cCCCcccc-----ChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHc---------cCCCCcCHHHHHhhCCcCC---
Confidence 99988776 999999 999999999987 566777888776664 7888888877776653322
Q ss_pred hhcccCchhhHHHHHHHHHhhhhhh----ccC----CCChhhhhhccHHHHHHHHHHHHhc
Q 013316 391 QRREMNGGLVDPMLVNARENLDLRL----SFD----CLDTDELRTITLEDLEAGLKLLLRL 443 (445)
Q Consensus 391 ~~~~~n~r~l~~~~~~~~~~~~~~~----~~~----~~~~~~~~~i~~~d~~~a~~~~~~~ 443 (445)
.|+++=.++-.|.-.+..|. ..+ .........|+.|||.++.+++.|.
T Consensus 880 -----TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PS 935 (953)
T KOG0736|consen 880 -----TGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPS 935 (953)
T ss_pred -----chhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCc
Confidence 13333333322222222221 111 2234556789999999999988763
No 13
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.2e-32 Score=256.02 Aligned_cols=209 Identities=20% Similarity=0.279 Sum_probs=179.5
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
...|+++-|.+++|++|.+.+++++-|.+... ++.+-|.+|||.||||||||++||++|.+.+. ||+..
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftr----LGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V-------PFF~~ 368 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTR----LGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV-------PFFYA 368 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhh----ccCcCCCceEEeCCCCCchhHHHHHhhcccCC-------CeEec
Confidence 45689999999999999999999887766655 45567889999999999999999999999877 99999
Q ss_pred ecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----CcEEEEEecCc
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYS 317 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~i~a~~~ 317 (445)
+.|.+-..|+|....+++++|..|+ +|||||||||++..+|......+....+++||..||+ ..|+||+||+.
T Consensus 369 sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNf 448 (752)
T KOG0734|consen 369 SGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNF 448 (752)
T ss_pred cccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCC
Confidence 9999999999999999999998885 5999999999999998765555888999999999997 45888888776
Q ss_pred hhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316 318 EPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 395 (445)
Q Consensus 318 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 395 (445)
.+.. |++|.| |||++|.+|.||..-|.+|++.|+++. .++.++++..++.-..+++
T Consensus 449 pe~L-----D~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki---------~~~~~VD~~iiARGT~GFs-------- 506 (752)
T KOG0734|consen 449 PEAL-----DKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI---------PLDEDVDPKIIARGTPGFS-------- 506 (752)
T ss_pred hhhh-----hHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC---------CcccCCCHhHhccCCCCCc--------
Confidence 5543 899998 999999999999999999999999985 6677888888775554444
Q ss_pred CchhhHHHHHHH
Q 013316 396 NGGLVDPMLVNA 407 (445)
Q Consensus 396 n~r~l~~~~~~~ 407 (445)
+.+|.|++..|
T Consensus 507 -GAdLaNlVNqA 517 (752)
T KOG0734|consen 507 -GADLANLVNQA 517 (752)
T ss_pred -hHHHHHHHHHH
Confidence 66677777665
No 14
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-32 Score=241.14 Aligned_cols=235 Identities=19% Similarity=0.306 Sum_probs=193.2
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
.+.+.++.|.++..++|++ .+.+|+.+++.+..++..+|.+|++||+||||||.+|+++|..... .|..+
T Consensus 181 ~Ety~diGGle~QiQEiKE---svELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSA-------TFlRv 250 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKE---SVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSA-------TFLRV 250 (440)
T ss_pred hhhhcccccHHHHHHHHHH---hhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccch-------hhhhh
Confidence 4567889999988888887 7889999999999999999999999999999999999999998766 89999
Q ss_pred ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhh---ccC----CcEEEEEe
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG----GKVVVIFA 314 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~---~~~----~~~~~i~a 314 (445)
-.|+|+.+|.|+.++.++++|+-| .++|+||||||++..+|.+.+....+++|..+|.+ +++ +.+-||+|
T Consensus 251 vGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimA 330 (440)
T KOG0726|consen 251 VGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 330 (440)
T ss_pred hhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEe
Confidence 999999999999999999999877 46999999999999999765555555666655544 443 78999999
Q ss_pred cCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316 315 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 392 (445)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 392 (445)
|+.-. ..||+|.| |+|+.|.||.|+......|+..+.+++ .+..++..+.+..- +
T Consensus 331 Tnrie-----~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~M---------tl~~dVnle~li~~---------k 387 (440)
T KOG0726|consen 331 TNRIE-----TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRM---------TLAEDVNLEELIMT---------K 387 (440)
T ss_pred ccccc-----ccCHhhcCCCccccccccCCCchhhhceeEEEeeccc---------chhccccHHHHhhc---------c
Confidence 66544 34999998 999999999999999999999888887 55667766665422 1
Q ss_pred cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316 393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 441 (445)
Q Consensus 393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 441 (445)
....++++++++..| +..+-.+.+..++.+||..|.+.+.
T Consensus 388 ddlSGAdIkAictEa---------GllAlRerRm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 388 DDLSGADIKAICTEA---------GLLALRERRMKVTMEDFKKAKEKVL 427 (440)
T ss_pred cccccccHHHHHHHH---------hHHHHHHHHhhccHHHHHHHHHHHH
Confidence 244588888888877 2222345677999999999988653
No 15
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.97 E-value=4.5e-31 Score=253.61 Aligned_cols=322 Identities=20% Similarity=0.230 Sum_probs=241.9
Q ss_pred HHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccc--ccccCCCCcHHHHHHHcCCHHHHHHHH
Q 013316 28 AFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL--EAQNMYGETPLHMAAKNGCNEAAKLLL 105 (445)
Q Consensus 28 ~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v--~~~d~~g~tpLh~A~~~g~~~~~~~Ll 105 (445)
.+...|...|..+....+ +..++...... .+++|-..+.+++.+|.++ .++.....+|..+.+.+|+++.+.-.+
T Consensus 19 ~l~~~L~~~G~~v~~a~~--~~~al~~i~~~-~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~Tg~g~i~~AV~A~ 95 (464)
T COG2204 19 LLEQALELAGYEVVTAES--AEEALEALSES-PFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVMTGHGDIDTAVEAL 95 (464)
T ss_pred HHHHHHHHcCCeEEEeCC--HHHHHHHHhcC-CCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEEeCCCCHHHHHHHH
Confidence 445567777877777764 77888876666 6777777777776666554 234444678888889999999999999
Q ss_pred hcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHHhHHHHHHHHHhhhcchHHHHHHHHHH
Q 013316 106 AHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWA 185 (445)
Q Consensus 106 ~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~g~~~~~~~l~~~~ 185 (445)
+.||. ||+.++.+...+...+...-......... .............++|.++.++++++.+
T Consensus 96 k~GA~------------Dfl~KP~~~~~L~~~v~ral~~~~~~~e~------~~~~~~~~~~~~~liG~S~am~~l~~~i 157 (464)
T COG2204 96 RLGAF------------DFLEKPFDLDRLLAIVERALELRELQREN------RRSLKRAKSLGGELVGESPAMQQLRRLI 157 (464)
T ss_pred hcCcc------------eeeeCCCCHHHHHHHHHHHHHHhhhhhhh------hhhhhccccccCCceecCHHHHHHHHHH
Confidence 99999 89999998777776663332211111000 0000111123456999999999999988
Q ss_pred HHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc-----ccccccCCchhH
Q 013316 186 KGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD-----LVGEFVGHTGPK 260 (445)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~-----l~~~~~g~~~~~ 260 (445)
.++ +....+|||+|++||||.++||+||+.+.+ ..+||+.+||+. +.+++|||....
T Consensus 158 ~kv--------------A~s~a~VLI~GESGtGKElvAr~IH~~S~R----~~~PFVavNcaAip~~l~ESELFGhekGA 219 (464)
T COG2204 158 AKV--------------APSDASVLITGESGTGKELVARAIHQASPR----AKGPFIAVNCAAIPENLLESELFGHEKGA 219 (464)
T ss_pred HHH--------------hCCCCCEEEECCCCCcHHHHHHHHHhhCcc----cCCCceeeecccCCHHHHHHHhhcccccC
Confidence 877 678889999999999999999999999988 445999999998 456699984432
Q ss_pred H-------HHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-------------cEEEEEecCchhH
Q 013316 261 T-------RRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------------KVVVIFAGYSEPM 320 (445)
Q Consensus 261 ~-------~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------------~~~~i~a~~~~~~ 320 (445)
+ ...|+.|.||+|||||| ++++.++|.+||+.++++ ++.||+||+.+..
T Consensus 220 FTGA~~~r~G~fE~A~GGTLfLDEI-----------~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~ 288 (464)
T COG2204 220 FTGAITRRIGRFEQANGGTLFLDEI-----------GEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLE 288 (464)
T ss_pred cCCcccccCcceeEcCCceEEeecc-----------ccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHH
Confidence 2 34899999999999999 566669999999999863 3578888877765
Q ss_pred HHHHh--hCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316 321 KRVIA--SNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 395 (445)
Q Consensus 321 ~~~~~--~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 395 (445)
..+.+ -.+.|..|+. ..|.+|++. .+|+..++++|+++.+.+.+ .-...++++++..+..+.| ||
T Consensus 289 ~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~----~~~~~~s~~a~~~L~~y~W------PG 358 (464)
T COG2204 289 EEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELG----RPPKGFSPEALAALLAYDW------PG 358 (464)
T ss_pred HHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcC----CCCCCCCHHHHHHHHhCCC------Ch
Confidence 54321 1255666885 456777776 79999999999999887665 3356888999999999998 99
Q ss_pred CchhhHHHHHHHHH
Q 013316 396 NGGLVDPMLVNARE 409 (445)
Q Consensus 396 n~r~l~~~~~~~~~ 409 (445)
|.|+|+|+++++.-
T Consensus 359 NVREL~N~ver~~i 372 (464)
T COG2204 359 NVRELENVVERAVI 372 (464)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999843
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.2e-31 Score=227.40 Aligned_cols=235 Identities=24% Similarity=0.327 Sum_probs=189.2
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
.+.+++|.|.+..+++|. ..+.+|..+++.+..++..+|.++|+|||||||||++||+.|...+. .|..+
T Consensus 167 tE~YsDiGGldkQIqELv---EAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a-------TFLKL 236 (424)
T KOG0652|consen 167 TEQYSDIGGLDKQIQELV---EAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA-------TFLKL 236 (424)
T ss_pred cccccccccHHHHHHHHH---HHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc-------hHHHh
Confidence 346778999986655554 47889999999999999999999999999999999999999998877 88889
Q ss_pred ecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHh---hccC----CcEEEEEe
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMS---VMDG----GKVVVIFA 314 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~---~~~~----~~~~~i~a 314 (445)
....|+..|+|...+.+++.|..|+ ++||||||+|.+..+|.++.....+++|..+|. ++++ .++-||+|
T Consensus 237 AgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAA 316 (424)
T KOG0652|consen 237 AGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAA 316 (424)
T ss_pred cchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEee
Confidence 9999999999999999999998774 599999999999999987665556677766554 4444 57899999
Q ss_pred cCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316 315 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 392 (445)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 392 (445)
|++.+.. ||+|++ |+|++|+||.|+.+.+..|++.+-+++. .++++..+.++.-.
T Consensus 317 TNRvDiL-----DPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMn---------v~~DvNfeELaRsT--------- 373 (424)
T KOG0652|consen 317 TNRVDIL-----DPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMN---------VSDDVNFEELARST--------- 373 (424)
T ss_pred ccccccc-----CHHHhhcccccccccCCCCChHHHHHHHHHhhhhcC---------CCCCCCHHHHhhcc---------
Confidence 8887665 899887 9999999999999999999999988873 45677666655322
Q ss_pred cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316 393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 441 (445)
Q Consensus 393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 441 (445)
...|+.++++++-.|-..+ +| .+...|+-+||.++|.+++
T Consensus 374 ddFNGAQcKAVcVEAGMiA-LR--------r~atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 374 DDFNGAQCKAVCVEAGMIA-LR--------RGATEVTHEDFMEGILEVQ 413 (424)
T ss_pred cccCchhheeeehhhhHHH-Hh--------cccccccHHHHHHHHHHHH
Confidence 2568888888876662222 11 1223699999999998765
No 17
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.8e-30 Score=235.51 Aligned_cols=208 Identities=25% Similarity=0.386 Sum_probs=179.1
Q ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCC-CCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC
Q 013316 162 DELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGL-KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 240 (445)
Q Consensus 162 ~~~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~ 240 (445)
.+....|++|.|.+.+++++++ .+.+|.++++++. .--..++.+||++||||||||++|+++|++.+. +
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e---~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga-------~ 154 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQE---LVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGA-------N 154 (386)
T ss_pred hhceeehhhccchHHHHHHHHH---HHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCC-------C
Confidence 4567789999999999999998 5788888998873 223457889999999999999999999999888 9
Q ss_pred eEEeecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC------CcEEE
Q 013316 241 VTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVV 311 (445)
Q Consensus 241 ~~~~~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~~~~ 311 (445)
|+.+..+.+.++|||++.+.++.+|..| +++||||||+|++...|++.+++....+-+++....|+ .++.|
T Consensus 155 fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlV 234 (386)
T KOG0737|consen 155 FINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLV 234 (386)
T ss_pred cceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEE
Confidence 9999999999999999999999999877 57999999999999988877788888888899988875 24666
Q ss_pred EEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhh
Q 013316 312 IFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 391 (445)
Q Consensus 312 i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 391 (445)
++||++. .+ +|.++.||++.+++++.|+..+|.+|++.+++.. +++++++...++....+|++.|+
T Consensus 235 lgATNRP-~D----lDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e---------~~e~~vD~~~iA~~t~GySGSDL 300 (386)
T KOG0737|consen 235 LGATNRP-FD----LDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKE---------KLEDDVDLDEIAQMTEGYSGSDL 300 (386)
T ss_pred EeCCCCC-cc----HHHHHHHhCcceeeeCCCchhhHHHHHHHHhccc---------ccCcccCHHHHHHhcCCCcHHHH
Confidence 6665433 33 3899999999999999999999999999999886 56789999999999999986666
Q ss_pred hc
Q 013316 392 RR 393 (445)
Q Consensus 392 ~~ 393 (445)
+.
T Consensus 301 ke 302 (386)
T KOG0737|consen 301 KE 302 (386)
T ss_pred HH
Confidence 54
No 18
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.8e-30 Score=225.51 Aligned_cols=235 Identities=19% Similarity=0.241 Sum_probs=186.3
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316 164 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 243 (445)
Q Consensus 164 ~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~ 243 (445)
....+.++.|..+.++.+++ .+.+|+-+++.+..++..+|.+||+|||||||||++||++|..... .|+.
T Consensus 172 pdvty~dvggckeqieklre---vve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda-------cfir 241 (435)
T KOG0729|consen 172 PDVTYSDVGGCKEQIEKLRE---VVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA-------CFIR 241 (435)
T ss_pred CCcccccccchHHHHHHHHH---HHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc-------eEEe
Confidence 34567789998888777777 5667777888888899999999999999999999999999987766 9999
Q ss_pred eecccccccccCCchhHHHHHHHHccC---cEEEEcCccccccCCCCCCchhHHHHHHHHHhhc---cC----CcEEEEE
Q 013316 244 VQRTDLVGEFVGHTGPKTRRRIKEAEG---GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM---DG----GKVVVIF 313 (445)
Q Consensus 244 ~~~~~l~~~~~g~~~~~~~~~~~~a~~---~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~---~~----~~~~~i~ 313 (445)
+-.|.|+.+|+|+....++++|+-|+. ||||+||||.+...|-+++.....++|..+|..+ ++ +++-|++
T Consensus 242 vigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlm 321 (435)
T KOG0729|consen 242 VIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 321 (435)
T ss_pred ehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEe
Confidence 999999999999999999999988854 9999999999999887766555567776655544 43 7899999
Q ss_pred ecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhh
Q 013316 314 AGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 391 (445)
Q Consensus 314 a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 391 (445)
||++..+. ||+|.+ |+|++++|..|+-+.+..|++.+.+.++ ...++-.+. +++.+.
T Consensus 322 atnrpdtl-----dpallrpgrldrkvef~lpdlegrt~i~kihaksms---------verdir~el----larlcp--- 380 (435)
T KOG0729|consen 322 ATNRPDTL-----DPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMS---------VERDIRFEL----LARLCP--- 380 (435)
T ss_pred ecCCCCCc-----CHhhcCCcccccceeccCCcccccceeEEEeccccc---------cccchhHHH----HHhhCC---
Confidence 98887765 899998 9999999999999999999998877653 223333333 444441
Q ss_pred hcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316 392 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440 (445)
Q Consensus 392 ~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 440 (445)
-..+.+++.++..| +..+-...+...|+.||.+|+.++
T Consensus 381 --nstgaeirsvctea---------gmfairarrk~atekdfl~av~kv 418 (435)
T KOG0729|consen 381 --NSTGAEIRSVCTEA---------GMFAIRARRKVATEKDFLDAVNKV 418 (435)
T ss_pred --CCcchHHHHHHHHh---------hHHHHHHHhhhhhHHHHHHHHHHH
Confidence 13377888888776 222233455678999999998764
No 19
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.6e-29 Score=250.80 Aligned_cols=240 Identities=24% Similarity=0.347 Sum_probs=192.8
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
...|.++.|.+.+++.+++. +.++..+++.+...+..++.++|||||||||||++|+++|.+++. +|+.+
T Consensus 238 ~v~~~diggl~~~k~~l~e~---v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~-------~fi~v 307 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEA---IETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRS-------RFISV 307 (494)
T ss_pred CcceehhhcHHHHHHHHHHH---HHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCC-------eEEEe
Confidence 45678899999999999984 445555666554456678889999999999999999999998877 99999
Q ss_pred ecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----CcEEEEEecCc
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYS 317 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~i~a~~~ 317 (445)
..+++.++|+|+++++++.+|..|. +|||||||+|++.+.++.+......+++++|+..|++ ..+++|++|+.
T Consensus 308 ~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~ 387 (494)
T COG0464 308 KGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNR 387 (494)
T ss_pred eCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCC
Confidence 9999999999999999999999886 6999999999999999876666667999999999974 55777888776
Q ss_pred hhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316 318 EPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 395 (445)
Q Consensus 318 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 395 (445)
.... ||++++ ||+..|+||+||.+++.+|++.++.+... .+..+++.+.++....+++
T Consensus 388 p~~l-----d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~-------~~~~~~~~~~l~~~t~~~s-------- 447 (494)
T COG0464 388 PDDL-----DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKP-------PLAEDVDLEELAEITEGYS-------- 447 (494)
T ss_pred cccc-----CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCC-------cchhhhhHHHHHHHhcCCC--------
Confidence 5554 899999 99999999999999999999999986431 1344666666666554443
Q ss_pred CchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHhc
Q 013316 396 NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL 443 (445)
Q Consensus 396 n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~~ 443 (445)
+.++.+++..|......... ...||.+||..|++.+.|.
T Consensus 448 -gadi~~i~~ea~~~~~~~~~--------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 448 -GADIAALVREAALEALREAR--------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred -HHHHHHHHHHHHHHHHHHhc--------cCCccHHHHHHHHHhcCCC
Confidence 77788888877443322211 3479999999999987663
No 20
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.96 E-value=7e-29 Score=239.68 Aligned_cols=235 Identities=21% Similarity=0.274 Sum_probs=183.0
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
...|++|+|.+..+++|++. +.++..+++.+...+..+|.++||+||||||||++|+++|+.++. +|+.+
T Consensus 141 ~v~~~digGl~~~k~~l~~~---v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~-------~fi~i 210 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREA---VELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA-------TFIRV 210 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHH---HHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC-------CEEEE
Confidence 45688999999999999984 445555666666666778999999999999999999999998766 89999
Q ss_pred ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCc---hhHHHHHHHHHhhccC----CcEEEEEe
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDK---DYGIEALEEIMSVMDG----GKVVVIFA 314 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~---~~~~~~~~~ll~~~~~----~~~~~i~a 314 (445)
.++.+...|+|++...++.+|..+ .++||||||||.+.+++.+... ....+.+..|+..+++ ..+++|++
T Consensus 211 ~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~a 290 (398)
T PTZ00454 211 VGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMA 290 (398)
T ss_pred ehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEe
Confidence 999999999999998999998776 5699999999999987643322 2233556677777764 46788888
Q ss_pred cCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316 315 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 392 (445)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 392 (445)
|+.... .||++++ ||+..|+|+.|+.+++.+|++.++.+. .+.++++.+.++..+.+
T Consensus 291 TN~~d~-----LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~---------~l~~dvd~~~la~~t~g------- 349 (398)
T PTZ00454 291 TNRADT-----LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM---------NLSEEVDLEDFVSRPEK------- 349 (398)
T ss_pred cCCchh-----CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC---------CCCcccCHHHHHHHcCC-------
Confidence 765432 3899887 999999999999999999999988765 34556666666655443
Q ss_pred cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316 393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 441 (445)
Q Consensus 393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 441 (445)
.+++++++++..|...... .+...|+.+||.+|++.+.
T Consensus 350 --~sgaDI~~l~~eA~~~A~r---------~~~~~i~~~df~~A~~~v~ 387 (398)
T PTZ00454 350 --ISAADIAAICQEAGMQAVR---------KNRYVILPKDFEKGYKTVV 387 (398)
T ss_pred --CCHHHHHHHHHHHHHHHHH---------cCCCccCHHHHHHHHHHHH
Confidence 4578888998888433221 1234799999999998864
No 21
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.4e-29 Score=223.34 Aligned_cols=204 Identities=19% Similarity=0.257 Sum_probs=167.7
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316 164 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 243 (445)
Q Consensus 164 ~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~ 243 (445)
....|+++.|.+.+|+.|++ .+.+|-..++++..- ..+..++||||||||||+.+|+++|.+.+. .|+.
T Consensus 128 PNVkWsDVAGLE~AKeALKE---AVILPIKFPqlFtGk-R~PwrgiLLyGPPGTGKSYLAKAVATEAnS-------TFFS 196 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKE---AVILPIKFPQLFTGK-RKPWRGILLYGPPGTGKSYLAKAVATEANS-------TFFS 196 (439)
T ss_pred CCCchhhhccchhHHHHHHh---heeecccchhhhcCC-CCcceeEEEeCCCCCcHHHHHHHHHhhcCC-------ceEE
Confidence 45689999999999999998 677777777777643 457889999999999999999999999876 9999
Q ss_pred eecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-----CcEEEEEec
Q 013316 244 VQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAG 315 (445)
Q Consensus 244 ~~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~i~a~ 315 (445)
++.|+|+++|.|++++.+..+|+-| +++||||||||.++.+|+.+..+..+++-.+||.+|++ ..+.|++||
T Consensus 197 vSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgAT 276 (439)
T KOG0739|consen 197 VSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGAT 276 (439)
T ss_pred eehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecC
Confidence 9999999999999999999999776 56999999999999999988899999999999999986 345555554
Q ss_pred CchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhh
Q 013316 316 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 391 (445)
Q Consensus 316 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 391 (445)
+.++. .|.++||||+..|++|.|+...|..+++.++..... .++ +.+...+.....+|++.|+
T Consensus 277 -NiPw~----LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~-------~LT-~~d~~eL~~kTeGySGsDi 339 (439)
T KOG0739|consen 277 -NIPWV----LDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPH-------VLT-EQDFKELARKTEGYSGSDI 339 (439)
T ss_pred -CCchh----HHHHHHHHhhcceeccCCcHHHhhhhheeccCCCcc-------ccc-hhhHHHHHhhcCCCCcCce
Confidence 44444 389999999999999999999999999998877532 222 2244455555666665543
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.96 E-value=9.4e-29 Score=240.35 Aligned_cols=235 Identities=23% Similarity=0.319 Sum_probs=181.8
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
..|++|+|.++.++++.+. +..+..+++.+...+..+|.++||+||||||||++|+++|+.++. +|+.++
T Consensus 128 ~~~~di~Gl~~~~~~l~~~---i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~-------~~i~v~ 197 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREA---VELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA-------TFIRVV 197 (389)
T ss_pred CCHHHhCCcHHHHHHHHHH---HHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC-------CEEEee
Confidence 4577899999999999885 445556666666677788999999999999999999999999876 899999
Q ss_pred cccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchh---HHHHHHHHHhhccC----CcEEEEEec
Q 013316 246 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDY---GIEALEEIMSVMDG----GKVVVIFAG 315 (445)
Q Consensus 246 ~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~---~~~~~~~ll~~~~~----~~~~~i~a~ 315 (445)
++.+.+.|+|+++..++.+|+.+. ++||||||||.+.++++++.... ..+.+..++..++. ++++||++|
T Consensus 198 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aT 277 (389)
T PRK03992 198 GSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAAT 277 (389)
T ss_pred hHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEec
Confidence 999999999999999999998764 59999999999998776433222 23344556655653 578888887
Q ss_pred CchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhc
Q 013316 316 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 393 (445)
Q Consensus 316 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 393 (445)
+.... .|+++++ ||+..|+||.|+.+++.+|++.++.+. .+..+++.+.++..+.++
T Consensus 278 n~~~~-----ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~---------~~~~~~~~~~la~~t~g~------- 336 (389)
T PRK03992 278 NRIDI-----LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM---------NLADDVDLEELAELTEGA------- 336 (389)
T ss_pred CChhh-----CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC---------CCCCcCCHHHHHHHcCCC-------
Confidence 76532 3899887 999999999999999999999988764 334556666766655444
Q ss_pred ccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHh
Q 013316 394 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 442 (445)
Q Consensus 394 ~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 442 (445)
+++++++++.+|...+.. +....|+.+||.+|+..+.+
T Consensus 337 --sgadl~~l~~eA~~~a~~---------~~~~~i~~~d~~~A~~~~~~ 374 (389)
T PRK03992 337 --SGADLKAICTEAGMFAIR---------DDRTEVTMEDFLKAIEKVMG 374 (389)
T ss_pred --CHHHHHHHHHHHHHHHHH---------cCCCCcCHHHHHHHHHHHhc
Confidence 477788888877432211 12336999999999998865
No 23
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=1.7e-28 Score=257.88 Aligned_cols=246 Identities=22% Similarity=0.297 Sum_probs=189.4
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
...|++++|++.+++.|.+.+ .++..+++.+...+..++.++|||||||||||++|+++|.+++. +|+.+
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v---~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~-------~fi~v 518 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAV---EWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA-------NFIAV 518 (733)
T ss_pred ccchhhcccHHHHHHHHHHHH---HhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC-------CEEEE
Confidence 446889999999999999854 44445555555556678889999999999999999999999876 99999
Q ss_pred ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCC-CchhHHHHHHHHHhhccC----CcEEEEEecC
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKAD-DKDYGIEALEEIMSVMDG----GKVVVIFAGY 316 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~-~~~~~~~~~~~ll~~~~~----~~~~~i~a~~ 316 (445)
+++++.++|+|+++..++.+|..| .++||||||||.+++.++.. ......+++++|+..|++ .+++||++|+
T Consensus 519 ~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn 598 (733)
T TIGR01243 519 RGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATN 598 (733)
T ss_pred ehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCC
Confidence 999999999999999999999876 45999999999999988643 344566888999999874 5688888877
Q ss_pred chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316 317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 394 (445)
Q Consensus 317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 394 (445)
..... ||++++ ||+..|+||.|+.+++.+|++.++++. .+.++++.+.++..+.+++
T Consensus 599 ~~~~l-----d~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~---------~~~~~~~l~~la~~t~g~s------- 657 (733)
T TIGR01243 599 RPDIL-----DPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM---------PLAEDVDLEELAEMTEGYT------- 657 (733)
T ss_pred ChhhC-----CHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC---------CCCccCCHHHHHHHcCCCC-------
Confidence 65433 899987 999999999999999999999887764 4456677778777776665
Q ss_pred cCchhhHHHHHHHHHhhhhhhccCC----C-----ChhhhhhccHHHHHHHHHHHHhc
Q 013316 395 MNGGLVDPMLVNARENLDLRLSFDC----L-----DTDELRTITLEDLEAGLKLLLRL 443 (445)
Q Consensus 395 ~n~r~l~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~i~~~d~~~a~~~~~~~ 443 (445)
++++.+++.+|......+..... . +......|+.+||.+|++.++|.
T Consensus 658 --gadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps 713 (733)
T TIGR01243 658 --GADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPS 713 (733)
T ss_pred --HHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCC
Confidence 55556666555433222211100 0 01123479999999999987763
No 24
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-28 Score=239.19 Aligned_cols=203 Identities=20% Similarity=0.281 Sum_probs=176.9
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
-.|+++.|+.++++.+.+. +..|.+.++.+.....+.+.++|+|||||||||.+|-++|..++. .|+.+.
T Consensus 664 i~w~digg~~~~k~~l~~~---i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~-------~fisvK 733 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEV---IEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL-------RFISVK 733 (952)
T ss_pred CCceecccHHHHHHHHHHH---HhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCe-------eEEEec
Confidence 4588999999999999984 556777778777777778889999999999999999999998877 999999
Q ss_pred cccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----CcEEEEEecCch
Q 013316 246 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSE 318 (445)
Q Consensus 246 ~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~i~a~~~~ 318 (445)
...+.++|+|.+++++|.+|+.| ++||||+||+|+++|+|+.++.....++.++||..||+ ..+.+++||++.
T Consensus 734 GPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRp 813 (952)
T KOG0735|consen 734 GPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRP 813 (952)
T ss_pred CHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCc
Confidence 99999999999999999999877 57999999999999999999999999999999999997 457888888877
Q ss_pred hHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316 319 PMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 392 (445)
Q Consensus 319 ~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 392 (445)
++. ||+|+| |+|+.++.|.|+..+|.+|++...+.. .++.+++.+-++....+++++|..
T Consensus 814 dli-----DpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~---------~~~~~vdl~~~a~~T~g~tgADlq 875 (952)
T KOG0735|consen 814 DLI-----DPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL---------LKDTDVDLECLAQKTDGFTGADLQ 875 (952)
T ss_pred ccc-----CHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc---------CCccccchHHHhhhcCCCchhhHH
Confidence 665 999998 999999999999999999999866543 446677888888778777755443
No 25
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.5e-29 Score=248.16 Aligned_cols=233 Identities=22% Similarity=0.326 Sum_probs=185.8
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316 164 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 243 (445)
Q Consensus 164 ~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~ 243 (445)
....|+++.|.+++|++|.+++..++.|....+ +++..|.++||+||||||||++|+++|.+.+. ||+.
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~----lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~s 374 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQE----LGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFS 374 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHHhcCHHHHHH----cCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceee
Confidence 346789999999999999999999887766655 55778999999999999999999999999887 9999
Q ss_pred eecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCC----CCchhHHHHHHHHHhhccC----CcEEEE
Q 013316 244 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKA----DDKDYGIEALEEIMSVMDG----GKVVVI 312 (445)
Q Consensus 244 ~~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~----~~~~~~~~~~~~ll~~~~~----~~~~~i 312 (445)
++.|+++..++|....+++++|..|+ ++|+||||||.+...|++ ++++.....+++||..||+ ..++++
T Consensus 375 vSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~ 454 (774)
T KOG0731|consen 375 VSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVL 454 (774)
T ss_pred echHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEE
Confidence 99999999999999999999998885 599999999999998842 3455566789999999997 458888
Q ss_pred EecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccC-CcccHHHHHHHHHHHHHH
Q 013316 313 FAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLH-SSCSMDAIAALIEKETTE 389 (445)
Q Consensus 313 ~a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 389 (445)
++|++.+.. ||+|+| |||+.|+++.|+..++.+|++.++++.. ++ +.++...++.+...+
T Consensus 455 a~tnr~d~l-----d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~---------~~~e~~dl~~~a~~t~gf--- 517 (774)
T KOG0731|consen 455 AATNRPDIL-----DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK---------LDDEDVDLSKLASLTPGF--- 517 (774)
T ss_pred eccCCcccc-----CHHhcCCCccccceeccCCchhhhHHHHHHHhhccC---------CCcchhhHHHHHhcCCCC---
Confidence 888877665 999998 9999999999999999999999998753 22 222222233333222
Q ss_pred hhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316 390 KQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 439 (445)
Q Consensus 390 ~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 439 (445)
-+.+|.|++..|--.. ..+....|+..|+..|++.
T Consensus 518 ------~gadl~n~~neaa~~a---------~r~~~~~i~~~~~~~a~~R 552 (774)
T KOG0731|consen 518 ------SGADLANLCNEAALLA---------ARKGLREIGTKDLEYAIER 552 (774)
T ss_pred ------cHHHHHhhhhHHHHHH---------HHhccCccchhhHHHHHHH
Confidence 2667777777661111 1223457888999988873
No 26
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.96 E-value=1.7e-28 Score=238.19 Aligned_cols=234 Identities=18% Similarity=0.282 Sum_probs=180.2
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
..|++|.|.+..++++.+.+ .++..+++.+...+..++.++||+||||||||++|+++|..+.. +|+.+.
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v---~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~-------~fi~V~ 249 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAV---ELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA-------TFLRVV 249 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHH---HhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC-------CEEEEe
Confidence 46788999999999998854 45566666666677788999999999999999999999998765 899999
Q ss_pred cccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCch---hHHHHHHHHHhhccC----CcEEEEEec
Q 013316 246 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKD---YGIEALEEIMSVMDG----GKVVVIFAG 315 (445)
Q Consensus 246 ~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~---~~~~~~~~ll~~~~~----~~~~~i~a~ 315 (445)
.+.+.+.|+|++...++.+|..+ .++||||||||.+..++...... ...+.+..|+..+++ ..+.||++|
T Consensus 250 ~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~AT 329 (438)
T PTZ00361 250 GSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMAT 329 (438)
T ss_pred cchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEec
Confidence 99999999999998899999876 45899999999999877532221 223444556666653 568888887
Q ss_pred CchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhc
Q 013316 316 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 393 (445)
Q Consensus 316 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 393 (445)
+..... ||++++ ||+..|+|+.|+.+++.+|++.+++++ .+.++++.+.++..+..
T Consensus 330 Nr~d~L-----DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~---------~l~~dvdl~~la~~t~g-------- 387 (438)
T PTZ00361 330 NRIESL-----DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM---------TLAEDVDLEEFIMAKDE-------- 387 (438)
T ss_pred CChHHh-----hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC---------CCCcCcCHHHHHHhcCC--------
Confidence 754332 888876 999999999999999999999998875 34556666666655444
Q ss_pred ccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316 394 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 441 (445)
Q Consensus 394 ~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 441 (445)
.+++++++++..|...+.. .+...|+.+||.+|++++.
T Consensus 388 -~sgAdI~~i~~eA~~~Alr---------~~r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 388 -LSGADIKAICTEAGLLALR---------ERRMKVTQADFRKAKEKVL 425 (438)
T ss_pred -CCHHHHHHHHHHHHHHHHH---------hcCCccCHHHHHHHHHHHH
Confidence 4477788888777333211 2234799999999998864
No 27
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.96 E-value=6.9e-28 Score=237.48 Aligned_cols=234 Identities=22% Similarity=0.319 Sum_probs=177.8
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
..|+++.|.+.+|+.+.+..... ...... .+...|.++||+||||||||++|+++|.+++. +|+.++
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~----~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~-------~~~~l~ 291 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSF--SKQASN----YGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL-------PLLRLD 291 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHh--hHHHHh----cCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEE
Confidence 35788999999998888744322 111222 34467889999999999999999999999887 999999
Q ss_pred cccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCC-CCchhHHHHHHHHHhhccC--CcEEEEEecCchh
Q 013316 246 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKA-DDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP 319 (445)
Q Consensus 246 ~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~-~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~ 319 (445)
++.+.+.|+|+++.+++++|+.+ .+|||||||||.+.+.++. +......+++..|+..|++ ..+++|++|+...
T Consensus 292 ~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~ 371 (489)
T CHL00195 292 VGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNID 371 (489)
T ss_pred hHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChh
Confidence 99999999999999999999765 5699999999999875442 3345566888889988875 4566776655433
Q ss_pred HHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316 320 MKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 397 (445)
Q Consensus 320 ~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~ 397 (445)
. .||+++| |||..|+|+.|+.++|.+|++.++.+... ....+++.+.++..+.+++ +
T Consensus 372 ~-----Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~-------~~~~~~dl~~La~~T~GfS---------G 430 (489)
T CHL00195 372 L-----LPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP-------KSWKKYDIKKLSKLSNKFS---------G 430 (489)
T ss_pred h-----CCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC-------CcccccCHHHHHhhcCCCC---------H
Confidence 2 3899987 99999999999999999999999987521 1112455666666665555 6
Q ss_pred hhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHhc
Q 013316 398 GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL 443 (445)
Q Consensus 398 r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~~ 443 (445)
+++++++..|...... +...++.+|+..|++.+.|+
T Consensus 431 AdI~~lv~eA~~~A~~----------~~~~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 431 AEIEQSIIEAMYIAFY----------EKREFTTDDILLALKQFIPL 466 (489)
T ss_pred HHHHHHHHHHHHHHHH----------cCCCcCHHHHHHHHHhcCCC
Confidence 7777887777432211 11358999999999998886
No 28
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.95 E-value=1e-26 Score=228.59 Aligned_cols=260 Identities=19% Similarity=0.228 Sum_probs=186.0
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCC---CCCCe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---PTDRV 241 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~---~~~~~ 241 (445)
...|++|+|.++.++++++. +.++..+++.+...+..+|.++|||||||||||++|+++++.+...... ....|
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~---v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDA---VELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred CCCHHHcCChHHHHHHHHHH---HHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 45688999999999998884 4456666776666777789999999999999999999999998653211 12356
Q ss_pred EEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCC-CchhHHHHHHHHHhhccC----CcE
Q 013316 242 TEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKAD-DKDYGIEALEEIMSVMDG----GKV 309 (445)
Q Consensus 242 ~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~-~~~~~~~~~~~ll~~~~~----~~~ 309 (445)
+.+..+.+.++|+|+++..++.+|+.+ .++||||||+|.++++++.+ +.+....++++|+..|++ +++
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence 777888899999999999999888765 35899999999999887643 345566778899999875 568
Q ss_pred EEEEecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHH
Q 013316 310 VVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 387 (445)
Q Consensus 310 ~~i~a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 387 (445)
++|++|+.... +||+++| |||.+|+|+.|+.+++.+|++.++..... +. ..+..........+..++....
T Consensus 335 iVI~ATN~~d~-----LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~-l~-~~l~~~~g~~~a~~~al~~~av 407 (512)
T TIGR03689 335 IVIGASNREDM-----IDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLP-LD-ADLAEFDGDREATAAALIQRAV 407 (512)
T ss_pred EEEeccCChhh-----CCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCC-ch-HHHHHhcCCCHHHHHHHHHHHH
Confidence 88888766443 3999998 99999999999999999999999875210 00 0000011122223333333221
Q ss_pred HH------------------h-----hhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316 388 TE------------------K-----QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 439 (445)
Q Consensus 388 ~~------------------~-----~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 439 (445)
.. + ......|+++++++++|...+-.+... ....-|+.+|+..|+..
T Consensus 408 ~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~-----~~~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 408 DHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHIT-----GGQVGLRIEHLLAAVLD 477 (512)
T ss_pred HHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHh-----cCCcCcCHHHHHHHHHH
Confidence 11 1 012355889999999997665554431 12247889999988864
No 29
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.4e-27 Score=233.62 Aligned_cols=234 Identities=24% Similarity=0.335 Sum_probs=188.7
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316 164 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 243 (445)
Q Consensus 164 ~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~ 243 (445)
....|.++.|.+++|+++.+.+..++.|.+..++| +..|.+++++||||||||++||++|.+.+. ||+.
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lG----akiPkGvlLvGpPGTGKTLLAkAvAgEA~V-------PFf~ 213 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDFLKNPKKYQALG----AKIPKGVLLVGPPGTGKTLLAKAVAGEAGV-------PFFS 213 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcc----cccccceeEecCCCCCcHHHHHHHhcccCC-------Ccee
Confidence 45678999999999999999999888776666544 567899999999999999999999999777 9999
Q ss_pred eecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCC---CCchhHHHHHHHHHhhccCC----cEEEEE
Q 013316 244 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKA---DDKDYGIEALEEIMSVMDGG----KVVVIF 313 (445)
Q Consensus 244 ~~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~---~~~~~~~~~~~~ll~~~~~~----~~~~i~ 313 (445)
++.|+++..|+|...+.+|++|.+|+ +||+||||||++...|+. ++++.-...+++||..||+. .+++|+
T Consensus 214 iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvivia 293 (596)
T COG0465 214 ISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIA 293 (596)
T ss_pred ccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEe
Confidence 99999999999999999999999986 599999999999998863 35666678999999999973 477777
Q ss_pred ecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhh
Q 013316 314 AGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 391 (445)
Q Consensus 314 a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 391 (445)
+|++.+.. ||+|+| |||++|.++.|+-..|.+|++.+++.. .+++.++...++..+.+++
T Consensus 294 aTNRpdVl-----D~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~---------~l~~~Vdl~~iAr~tpGfs---- 355 (596)
T COG0465 294 ATNRPDVL-----DPALLRPGRFDRQILVELPDIKGREQILKVHAKNK---------PLAEDVDLKKIARGTPGFS---- 355 (596)
T ss_pred cCCCcccc-----hHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcC---------CCCCcCCHHHHhhhCCCcc----
Confidence 77766654 899998 999999999999999999999888775 5677888888777776666
Q ss_pred hcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316 392 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440 (445)
Q Consensus 392 ~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 440 (445)
+.++.|++-.|-- .+.| .....|+..||.+++..+
T Consensus 356 -----GAdL~nl~NEAal-~aar--------~n~~~i~~~~i~ea~drv 390 (596)
T COG0465 356 -----GADLANLLNEAAL-LAAR--------RNKKEITMRDIEEAIDRV 390 (596)
T ss_pred -----cchHhhhHHHHHH-HHHH--------hcCeeEeccchHHHHHHH
Confidence 4455555544311 1111 122356777777776654
No 30
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.94 E-value=6.7e-27 Score=235.31 Aligned_cols=234 Identities=22% Similarity=0.315 Sum_probs=178.5
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
...|++++|.+.+++++.+++..+..+..... .+...+.++||+||||||||++|+++|..++. +|+.+
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~----~g~~~~~giLL~GppGtGKT~la~alA~~~~~-------~~~~i 119 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTK----LGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV-------PFFSI 119 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHh----cCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC-------Ceeec
Confidence 34688999999999999998776554444443 34567889999999999999999999998766 89999
Q ss_pred ecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccC----CcEEEEEe
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFA 314 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~~~~i~a 314 (445)
+++++.+.+.|.+...++++|+.+. ++||||||||.+.++++.+ ..+.....++.|+..|+. ..++||++
T Consensus 120 ~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~a 199 (495)
T TIGR01241 120 SGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAA 199 (495)
T ss_pred cHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEe
Confidence 9999999999999999999998874 5999999999999877642 234455778889888864 45788888
Q ss_pred cCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316 315 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 392 (445)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 392 (445)
|+.... .||++++ ||+..|+|+.|+.++|.+|++.++... .+..+++.+.++..+..+
T Consensus 200 Tn~~~~-----ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~---------~~~~~~~l~~la~~t~G~------ 259 (495)
T TIGR01241 200 TNRPDV-----LDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK---------KLAPDVDLKAVARRTPGF------ 259 (495)
T ss_pred cCChhh-----cCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC---------CCCcchhHHHHHHhCCCC------
Confidence 765443 3899987 999999999999999999999998764 223344444444444333
Q ss_pred cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316 393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 441 (445)
Q Consensus 393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 441 (445)
+++++++++.+|...... .+...|+.+|+.+|++.+.
T Consensus 260 ---sgadl~~l~~eA~~~a~~---------~~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 260 ---SGADLANLLNEAALLAAR---------KNKTEITMNDIEEAIDRVI 296 (495)
T ss_pred ---CHHHHHHHHHHHHHHHHH---------cCCCCCCHHHHHHHHHHHh
Confidence 467788888776332111 1123689999999988653
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.2e-27 Score=209.74 Aligned_cols=233 Identities=23% Similarity=0.285 Sum_probs=188.6
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|+.+.|......++++ .+.++..++++++.++..+|.+++||||||||||.+||+++..++. +|+.+..
T Consensus 130 s~~~~ggl~~qirelre---~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~-------nfl~v~s 199 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELRE---VIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGV-------NFLKVVS 199 (388)
T ss_pred CHHHhCChHHHHHHHHh---heEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCC-------ceEEeeH
Confidence 56778887766666655 6788889999999999999999999999999999999999999887 9999999
Q ss_pred ccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhh---ccC----CcEEEEEecC
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG----GKVVVIFAGY 316 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~---~~~----~~~~~i~a~~ 316 (445)
+.++++|.|+++..+++.|..| .+||||+||||++..++.+..+...++++..|..+ |++ +++-+|+||+
T Consensus 200 s~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatN 279 (388)
T KOG0651|consen 200 SALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATN 279 (388)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecC
Confidence 9999999999999999999887 46999999999999988666666666676665554 444 7899999988
Q ss_pred chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316 317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 394 (445)
Q Consensus 317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 394 (445)
..++. +|+|+| |+|+.+..|.|+...+.+|++.+-... .....++.+++.++...+
T Consensus 280 rpdtL-----dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i---------~~~Geid~eaivK~~d~f-------- 337 (388)
T KOG0651|consen 280 RPDTL-----DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPI---------DFHGEIDDEAILKLVDGF-------- 337 (388)
T ss_pred Ccccc-----chhhcCCccccceeccCCcchhhceeeEeeccccc---------cccccccHHHHHHHHhcc--------
Confidence 87775 899998 999999999999999999887665543 334466778888776544
Q ss_pred cCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316 395 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 441 (445)
Q Consensus 395 ~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 441 (445)
|+.++++...++ ...+..++...+..||+..++.+..
T Consensus 338 -~gad~rn~~tEa---------g~Fa~~~~~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 338 -NGADLRNVCTEA---------GMFAIPEERDEVLHEDFMKLVRKQA 374 (388)
T ss_pred -ChHHHhhhcccc---------cccccchhhHHHhHHHHHHHHHHHH
Confidence 566777777665 2233456667788889888876643
No 32
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2e-27 Score=224.25 Aligned_cols=246 Identities=20% Similarity=0.252 Sum_probs=197.1
Q ss_pred hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 013316 171 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 250 (445)
Q Consensus 171 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~ 250 (445)
|.|.+.-...+.+. ..-.+.+.++.-.+++..+-.++|||||||||||.+||-|.+.++... | --++...+.
T Consensus 223 IGGLd~EFs~IFRR--AFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAre-----P-KIVNGPeIL 294 (744)
T KOG0741|consen 223 IGGLDKEFSDIFRR--AFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNARE-----P-KIVNGPEIL 294 (744)
T ss_pred cccchHHHHHHHHH--HHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCC-----C-cccCcHHHH
Confidence 66777555544432 111122234444556777888999999999999999999999997632 2 126788899
Q ss_pred ccccCCchhHHHHHHHHccC-----------cEEEEcCccccccCCCCC--CchhHHHHHHHHHhhccC----CcEEEEE
Q 013316 251 GEFVGHTGPKTRRRIKEAEG-----------GILFVDEAYRLIPMQKAD--DKDYGIEALEEIMSVMDG----GKVVVIF 313 (445)
Q Consensus 251 ~~~~g~~~~~~~~~~~~a~~-----------~il~lDEid~l~~~~~~~--~~~~~~~~~~~ll~~~~~----~~~~~i~ 313 (445)
++|+|+++.+++++|..|+. .||++||||+++.+|++. ++..+..++++||.-||+ ..+.||+
T Consensus 295 ~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIG 374 (744)
T KOG0741|consen 295 NKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIG 374 (744)
T ss_pred HHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEe
Confidence 99999999999999988731 699999999999988853 467788999999999997 7899999
Q ss_pred ecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhh
Q 013316 314 AGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 391 (445)
Q Consensus 314 a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 391 (445)
-|++.++. |.+|+| ||..++++..||..-|.+|++.+.+++.+. -.++++++.+.++.+.+.++
T Consensus 375 MTNR~DlI-----DEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~-----~~l~~dVdl~elA~lTKNfS---- 440 (744)
T KOG0741|consen 375 MTNRKDLI-----DEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMREN-----NKLSADVDLKELAALTKNFS---- 440 (744)
T ss_pred ccCchhhH-----HHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhc-----CCCCCCcCHHHHHHHhcCCc----
Confidence 99988776 889998 999999999999999999999998887532 26788999999999998887
Q ss_pred hcccCchhhHHHHHHHHHhhhhhhccCC------CChhhhhhccHHHHHHHHHHHHhc
Q 013316 392 RREMNGGLVDPMLVNARENLDLRLSFDC------LDTDELRTITLEDLEAGLKLLLRL 443 (445)
Q Consensus 392 ~~~~n~r~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~d~~~a~~~~~~~ 443 (445)
++++..++..|.+.+..|..... ....+...|+.+||..|+.+++|.
T Consensus 441 -----GAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPA 493 (744)
T KOG0741|consen 441 -----GAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPA 493 (744)
T ss_pred -----hhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcc
Confidence 88999999999887766653222 234667899999999999988773
No 33
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.6e-27 Score=191.74 Aligned_cols=143 Identities=29% Similarity=0.375 Sum_probs=129.3
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~ 91 (445)
.|.|||||||..|+.+++..|+...+..+|..|+ .||||||+||..|+.++|+.|+.. .|+|+|..+..|.||||+
T Consensus 37 D~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDd-aGWtPlhia~s~g~~evVk~Ll~r---~~advna~tn~G~T~LHy 112 (226)
T KOG4412|consen 37 DGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDD-AGWTPLHIAASNGNDEVVKELLNR---SGADVNATTNGGQTCLHY 112 (226)
T ss_pred cCCceeeeeeecCchhHHHHHHhcCCCCCCCccc-cCCchhhhhhhcCcHHHHHHHhcC---CCCCcceecCCCcceehh
Confidence 6889999999999999999888877888899987 799999999999999999999986 488999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA 159 (445)
Q Consensus 92 A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a 159 (445)
|+..|..+++.+|+++|+.++++|..|.||| |-|+..+..+++++|+..++..+..+..+.++...+
T Consensus 113 AagK~r~eIaqlLle~ga~i~~kD~~~qtpl-HRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~a 179 (226)
T KOG4412|consen 113 AAGKGRLEIAQLLLEKGALIRIKDKQGQTPL-HRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHA 179 (226)
T ss_pred hhcCChhhHHHHHHhcCCCCcccccccCchh-HHHHhccchhhHHHHHhcCCCCCcccccCccHHHHH
Confidence 9999999999999999999999999999999 777778889999999999988888888888887665
No 34
>CHL00176 ftsH cell division protein; Validated
Probab=99.94 E-value=3.8e-26 Score=232.11 Aligned_cols=233 Identities=24% Similarity=0.347 Sum_probs=177.5
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
...|++++|.+++++++.+.+..++.+.. +..++...+.++||+||||||||++|+++|.+++. +|+.+
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~~----~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~-------p~i~i 247 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLKKPER----FTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV-------PFFSI 247 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHhCHHH----HhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------Ceeec
Confidence 35788999999999999998766554433 33455677889999999999999999999998866 99999
Q ss_pred ecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccC----CcEEEEEe
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFA 314 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~~~~i~a 314 (445)
+++.+...+.|.....++.+|..+. ++||||||||.+...++.+ .++.....++.|+..|++ ..+++|++
T Consensus 248 s~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaa 327 (638)
T CHL00176 248 SGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAA 327 (638)
T ss_pred cHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEe
Confidence 9999988899988888899998874 5899999999998776532 234455778888888864 46788888
Q ss_pred cCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316 315 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 392 (445)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 392 (445)
|+..... ||++++ ||+..|.|+.|+.++|.+|++.++++. .+.++.+ +. .++..+.
T Consensus 328 TN~~~~L-----D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~---------~~~~d~~---l~-~lA~~t~---- 385 (638)
T CHL00176 328 TNRVDIL-----DAALLRPGRFDRQITVSLPDREGRLDILKVHARNK---------KLSPDVS---LE-LIARRTP---- 385 (638)
T ss_pred cCchHhh-----hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc---------ccchhHH---HH-HHHhcCC----
Confidence 7665432 788887 999999999999999999999998863 2223322 22 3333331
Q ss_pred cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316 393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440 (445)
Q Consensus 393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 440 (445)
..+++++++++.+|...... .+...|+.+||.+|+..+
T Consensus 386 -G~sgaDL~~lvneAal~a~r---------~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 386 -GFSGADLANLLNEAAILTAR---------RKKATITMKEIDTAIDRV 423 (638)
T ss_pred -CCCHHHHHHHHHHHHHHHHH---------hCCCCcCHHHHHHHHHHH
Confidence 24789999999987433221 122368999999998765
No 35
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.94 E-value=3.6e-26 Score=221.68 Aligned_cols=233 Identities=23% Similarity=0.320 Sum_probs=174.6
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
..+++++|.++.++++.+.+. ++..+++.+...+..+|.+++|+||||||||++|+++|..+.. +|+.+.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~---~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~-------~~~~v~ 188 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVE---LPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA-------TFIRVV 188 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHH---HHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC-------CEEecc
Confidence 356789999999999988543 4444555555566778899999999999999999999998876 788899
Q ss_pred cccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhH---HHHHHHHHhhccC----CcEEEEEec
Q 013316 246 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYG---IEALEEIMSVMDG----GKVVVIFAG 315 (445)
Q Consensus 246 ~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~---~~~~~~ll~~~~~----~~~~~i~a~ 315 (445)
++.+...|+|++...++.+|+.+ .++||||||+|.+..++.+...... ...+..++..++. +.+.+|++|
T Consensus 189 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~tt 268 (364)
T TIGR01242 189 GSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAAT 268 (364)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEec
Confidence 88898899999888888888766 3589999999999877654322222 2344555555542 568888887
Q ss_pred CchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhc
Q 013316 316 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 393 (445)
Q Consensus 316 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 393 (445)
+.... .+|++++ ||+..|+|+.|+.+++.+|++.++.+. .+.++++.+.++..+.++
T Consensus 269 n~~~~-----ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~---------~l~~~~~~~~la~~t~g~------- 327 (364)
T TIGR01242 269 NRPDI-----LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM---------KLAEDVDLEAIAKMTEGA------- 327 (364)
T ss_pred CChhh-----CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC---------CCCccCCHHHHHHHcCCC-------
Confidence 75532 3888886 999999999999999999999888664 334456666666555444
Q ss_pred ccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316 394 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440 (445)
Q Consensus 394 ~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 440 (445)
+++++++++..|...+.. .+...|+.+||.+|+..+
T Consensus 328 --sg~dl~~l~~~A~~~a~~---------~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 328 --SGADLKAICTEAGMFAIR---------EERDYVTMDDFIKAVEKV 363 (364)
T ss_pred --CHHHHHHHHHHHHHHHHH---------hCCCccCHHHHHHHHHHh
Confidence 467778888777433211 123479999999999875
No 36
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.9e-26 Score=218.42 Aligned_cols=246 Identities=22% Similarity=0.289 Sum_probs=191.7
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
...|+++.|.+.+++.+.+ .+.++.-|+..+..+. .++.++|++||||||||+++++||.++.. .|+.+
T Consensus 149 ~v~~~di~gl~~~k~~l~e---~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~a-------tff~i 217 (428)
T KOG0740|consen 149 NVGWDDIAGLEDAKQSLKE---AVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGA-------TFFNI 217 (428)
T ss_pred cccccCCcchhhHHHHhhh---hhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcc-------eEeec
Confidence 4578899999999999998 5666666777766654 46779999999999999999999999988 99999
Q ss_pred ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC------CcEEEEEec
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAG 315 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~~~~i~a~ 315 (445)
++++|.++|+|++++.++.+|.-| +++|+||||||+++.+|....++...+...+++-.++. .++++|+||
T Consensus 218 SassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaT 297 (428)
T KOG0740|consen 218 SASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGAT 297 (428)
T ss_pred cHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecC
Confidence 999999999999999999999776 57999999999999999777788888888887766653 467888886
Q ss_pred CchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316 316 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 395 (445)
Q Consensus 316 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 395 (445)
+..... |.++++||..++++|.|+.+.+..++.+.|.+... .+ .+.+.+.++.+..+++++
T Consensus 298 N~P~e~-----Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~-------~l-~~~d~~~l~~~Tegysgs------ 358 (428)
T KOG0740|consen 298 NRPWEL-----DEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPN-------GL-SDLDISLLAKVTEGYSGS------ 358 (428)
T ss_pred CCchHH-----HHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCC-------Cc-cHHHHHHHHHHhcCcccc------
Confidence 654433 88999999999999999999999999999998632 21 233455666677666644
Q ss_pred CchhhHHHHHHHHHh----hhhhhccCCCChhhhhhccHHHHHHHHHHHHhc
Q 013316 396 NGGLVDPMLVNAREN----LDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL 443 (445)
Q Consensus 396 n~r~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~~ 443 (445)
++.+++..|..- ............+..+.++..|+..+++.+.+.
T Consensus 359 ---di~~l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~ 407 (428)
T KOG0740|consen 359 ---DITALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPS 407 (428)
T ss_pred ---cHHHHHHHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccc
Confidence 444444444211 111001223456677899999999999988765
No 37
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.93 E-value=3.3e-26 Score=219.36 Aligned_cols=204 Identities=19% Similarity=0.235 Sum_probs=166.7
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
-.|++|+|.++.+.++.+.++.. +..+.+||+.|++||||..+|++||+.+.+ ..+||+.+|
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr~--------------A~tdstVLi~GESGTGKElfA~~IH~~S~R----~~~PFIaiN 303 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKRI--------------AKTDSTVLILGESGTGKELFARAIHNLSPR----ANGPFIAIN 303 (560)
T ss_pred cchhhhccCCHHHHHHHHHHHhh--------------cCCCCcEEEecCCCccHHHHHHHHHhcCcc----cCCCeEEEe
Confidence 46889999999999988877654 678899999999999999999999999988 455999999
Q ss_pred ccc-----ccccccCCchhHH--------HHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-----
Q 013316 246 RTD-----LVGEFVGHTGPKT--------RRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----- 307 (445)
Q Consensus 246 ~~~-----l~~~~~g~~~~~~--------~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~----- 307 (445)
|+. +.+++||+..... ...|+.|.+|+|||||| ++++...|.+||+.++++
T Consensus 304 CaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEI-----------gempl~LQaKLLRVLQEkei~rv 372 (560)
T COG3829 304 CAAIPETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEI-----------GEMPLPLQAKLLRVLQEKEIERV 372 (560)
T ss_pred cccCCHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhh-----------ccCCHHHHHHHHHHHhhceEEec
Confidence 998 5678898833322 34889999999999999 677779999999999863
Q ss_pred --------cEEEEEecCchhHHHHHhh--Ccccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcc
Q 013316 308 --------KVVVIFAGYSEPMKRVIAS--NEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSC 374 (445)
Q Consensus 308 --------~~~~i~a~~~~~~~~~~~~--~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~ 374 (445)
++.+|+||+.+....+.+. ...|..|+. ..|.+|++. ++|+..+.++|+.+.+.+++. ....+
T Consensus 373 G~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~----~v~~l 448 (560)
T COG3829 373 GGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGR----NVKGL 448 (560)
T ss_pred CCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCC----CcccC
Confidence 4688889888877655321 234455775 445777776 799999999999998777663 24567
Q ss_pred cHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316 375 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNAR 408 (445)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~ 408 (445)
+++++..+.++.| |||.|+|+|++|+++
T Consensus 449 s~~a~~~L~~y~W------PGNVRELeNviER~v 476 (560)
T COG3829 449 SPDALALLLRYDW------PGNVRELENVIERAV 476 (560)
T ss_pred CHHHHHHHHhCCC------CchHHHHHHHHHHHH
Confidence 8889999999988 999999999999995
No 38
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.3e-26 Score=185.10 Aligned_cols=144 Identities=26% Similarity=0.333 Sum_probs=129.0
Q ss_pred CccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316 3 KNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (445)
Q Consensus 3 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~ 81 (445)
-+..++..+ .||||||.||..|+.++|+.|+.+.+.++|..+. .|.||||||+..|..+|+++|++. |+.++++
T Consensus 61 ~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn-~G~T~LHyAagK~r~eIaqlLle~----ga~i~~k 135 (226)
T KOG4412|consen 61 PNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTN-GGQTCLHYAAGKGRLEIAQLLLEK----GALIRIK 135 (226)
T ss_pred CCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecC-CCcceehhhhcCChhhHHHHHHhc----CCCCccc
Confidence 344555544 6999999999999999999999888999999998 899999999999999999999995 8999999
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhh
Q 013316 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALE 152 (445)
Q Consensus 82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~ 152 (445)
|.+|+||||-|+..|+.+++++|+..|+.+|..|+.|+||||| |.-.++.+...+|.+++++....+..+
T Consensus 136 D~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~-al~e~~~d~a~lLV~~gAd~~~edke~ 205 (226)
T KOG4412|consen 136 DKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHH-ALAEGHPDVAVLLVRAGADTDREDKEG 205 (226)
T ss_pred ccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHH-HHhccCchHHHHHHHhccceeeccccC
Confidence 9999999999999999999999999999999999999999955 445568899999999998877666544
No 39
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.93 E-value=4.8e-25 Score=203.48 Aligned_cols=184 Identities=22% Similarity=0.315 Sum_probs=142.7
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.+++++||++....-.-+.+.+ ......+|+|||||||||||+|+.||+..+. .|..+++
T Consensus 22 ~lde~vGQ~HLlg~~~~lrr~v-------------~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~-------~f~~~sA 81 (436)
T COG2256 22 SLDEVVGQEHLLGEGKPLRRAV-------------EAGHLHSMILWGPPGTGKTTLARLIAGTTNA-------AFEALSA 81 (436)
T ss_pred CHHHhcChHhhhCCCchHHHHH-------------hcCCCceeEEECCCCCCHHHHHHHHHHhhCC-------ceEEecc
Confidence 4677888887753322111111 2567789999999999999999999999887 8888887
Q ss_pred ccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchh
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEP 319 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~ 319 (445)
..- +-+.+++++++| +..||||||||++...+ |+.||..|+++.+++|+|||.++
T Consensus 82 v~~-------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q-----------QD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 82 VTS-------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ-----------QDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred ccc-------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh-----------hhhhhhhhcCCeEEEEeccCCCC
Confidence 543 567888899887 24899999999998744 57899999999999999999998
Q ss_pred HHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316 320 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 397 (445)
Q Consensus 320 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~ 397 (445)
.-.+ +|+|++|+ +++.|.+++.+|+.+++++.+......++.. ...++++++. .+...+.||.|...|.
T Consensus 144 sF~l---n~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~----~~~i~~~a~~-~l~~~s~GD~R~aLN~ 212 (436)
T COG2256 144 SFEL---NPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQ----IIVLDEEALD-YLVRLSNGDARRALNL 212 (436)
T ss_pred Ceee---cHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcc----cccCCHHHHH-HHHHhcCchHHHHHHH
Confidence 8765 99999998 9999999999999999999666554444422 2345566655 6667787777777664
No 40
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.6e-25 Score=226.73 Aligned_cols=251 Identities=22% Similarity=0.237 Sum_probs=194.4
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
...|+++.|.+.++.++++ .+.+|+-+++.+......+|.++||+||||||||++||++|..+.... ....|+.-
T Consensus 261 ~v~fd~vggl~~~i~~LKE---mVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~--~kisffmr 335 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKE---MVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGN--RKISFFMR 335 (1080)
T ss_pred ccCccccccHHHHHHHHHH---HHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccc--cccchhhh
Confidence 4568899999999999999 578888999999999999999999999999999999999999875422 23367778
Q ss_pred ecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----CcEEEEEecCc
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYS 317 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~i~a~~~ 317 (445)
..++..++|+|+.+..++-+|++|+ ++|+|+||||.|+|.|++-.......+...||.+|++ +++++|+||++
T Consensus 336 kgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 336 KGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred cCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCC
Confidence 8889999999999999999999985 5999999999999998765556666888899999986 88999999887
Q ss_pred hhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316 318 EPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 395 (445)
Q Consensus 318 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 395 (445)
.+.. ||+||+ |||+.++||.|+.+++.+|+..+-.+.. ........+.+++...++.
T Consensus 416 pda~-----dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~--------~~i~~~l~~~la~~t~gy~-------- 474 (1080)
T KOG0732|consen 416 PDAI-----DPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWE--------PPISRELLLWLAEETSGYG-------- 474 (1080)
T ss_pred cccc-----chhhcCCcccceeEeeeCCchHHHHHHHHHhccCCC--------CCCCHHHHHHHHHhccccc--------
Confidence 7665 999988 9999999999999999999998887753 1122223334444444443
Q ss_pred CchhhHHHHHHHHHhhhhhh---cc----CCCChhhhhhccHHHHHHHHHHHHh
Q 013316 396 NGGLVDPMLVNARENLDLRL---SF----DCLDTDELRTITLEDLEAGLKLLLR 442 (445)
Q Consensus 396 n~r~l~~~~~~~~~~~~~~~---~~----~~~~~~~~~~i~~~d~~~a~~~~~~ 442 (445)
+++++.+...|.-....+- .+ ..........|...||..|+.++.|
T Consensus 475 -gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~p 527 (1080)
T KOG0732|consen 475 -GADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITP 527 (1080)
T ss_pred -hHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCC
Confidence 4556777766532222211 00 0112333456899999999887654
No 41
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.92 E-value=1.8e-24 Score=199.86 Aligned_cols=145 Identities=18% Similarity=0.261 Sum_probs=121.0
Q ss_pred CCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHcc--------CcE
Q 013316 201 VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE--------GGI 272 (445)
Q Consensus 201 ~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~--------~~i 272 (445)
.+.++|..++|+||||||||++|+++|++++. +|+.++.+++.++|+|++++.++++|+.|. +||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~-------~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcV 215 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGI-------EPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSC 215 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCC-------CeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeE
Confidence 44678999999999999999999999999887 899999999999999999999999998773 699
Q ss_pred EEEcCccccccCCCCCCchhHHHHH-HHHHhhccC----------------CcEEEEEecCchhHHHHHhhCccccc--c
Q 013316 273 LFVDEAYRLIPMQKADDKDYGIEAL-EEIMSVMDG----------------GKVVVIFAGYSEPMKRVIASNEGFCR--R 333 (445)
Q Consensus 273 l~lDEid~l~~~~~~~~~~~~~~~~-~~ll~~~~~----------------~~~~~i~a~~~~~~~~~~~~~~~l~~--R 333 (445)
|||||||++++++++.+.....+++ .+|+..||+ .+++||++||..... +|+|+| |
T Consensus 216 LFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~L-----DpALlRpGR 290 (413)
T PLN00020 216 LFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTL-----YAPLIRDGR 290 (413)
T ss_pred EEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccC-----CHhHcCCCC
Confidence 9999999999988755445544554 678877652 446777776554433 999999 9
Q ss_pred cccceeCCCCCHHHHHHHHHHHHhcc
Q 013316 334 VTKFFHFNDFNSEELAKILHIKMNNQ 359 (445)
Q Consensus 334 ~~~~i~~~~~~~~~~~~il~~~l~~~ 359 (445)
||+.+ ..|+.++|.+|++.++++.
T Consensus 291 fDk~i--~lPd~e~R~eIL~~~~r~~ 314 (413)
T PLN00020 291 MEKFY--WAPTREDRIGVVHGIFRDD 314 (413)
T ss_pred CCcee--CCCCHHHHHHHHHHHhccC
Confidence 99865 5899999999999988864
No 42
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.9e-24 Score=210.44 Aligned_cols=197 Identities=24% Similarity=0.345 Sum_probs=163.9
Q ss_pred hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316 170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 249 (445)
Q Consensus 170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l 249 (445)
++.|.......+++ .+.++++.+..+...+..+|.++|+|||||||||.+++++|++.+. .++.++++.+
T Consensus 185 ~~gg~~~~~~~i~e---~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a-------~~~~i~~pel 254 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRE---LVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA-------FLFLINGPEL 254 (693)
T ss_pred ccchhHHHHHHHHH---HHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCc-------eeEecccHHH
Confidence 46666666666666 5677888888888899999999999999999999999999999887 8999999999
Q ss_pred cccccCCchhHHHHHHHHc---c-CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----CcEEEEEecCchhHH
Q 013316 250 VGEFVGHTGPKTRRRIKEA---E-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSEPMK 321 (445)
Q Consensus 250 ~~~~~g~~~~~~~~~~~~a---~-~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~i~a~~~~~~~ 321 (445)
++++.|+++++++++|+++ + ++++||||+|.++|+|..... ...++..+|+.+|+. ++++|+.++++....
T Consensus 255 i~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sl 333 (693)
T KOG0730|consen 255 ISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSL 333 (693)
T ss_pred HHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCcccc
Confidence 9999999999999999988 3 689999999999998875444 567888889888875 668888886665443
Q ss_pred HHHhhCccccc-ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhh
Q 013316 322 RVIASNEGFCR-RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 391 (445)
Q Consensus 322 ~~~~~~~~l~~-R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 391 (445)
||++|| |||..+.+..|+..++.+|++.+.+++. +..+.+.+.++..+.++.++|.
T Consensus 334 -----d~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~---------~~~~~~l~~iA~~thGyvGaDL 390 (693)
T KOG0730|consen 334 -----DPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMN---------LLSDVDLEDIAVSTHGYVGADL 390 (693)
T ss_pred -----ChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcC---------CcchhhHHHHHHHccchhHHHH
Confidence 999998 9999999999999999999999998863 3344566666666666664443
No 43
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.92 E-value=1.1e-24 Score=205.96 Aligned_cols=204 Identities=22% Similarity=0.229 Sum_probs=163.8
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
....|||+++++.++.+.+..+ +....+||+.|++||||..+||+||+.+.+. ..||+.+||
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~V--------------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~----~kPfV~~NC 282 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVV--------------AKSDSTVLIRGETGTGKELVARAIHQLSPRR----DKPFVKLNC 282 (550)
T ss_pred ccccceecCHHHHHHHHHHHHH--------------hcCCCeEEEecCCCccHHHHHHHHHhhCccc----CCCceeeec
Confidence 4556999999999999877755 6788899999999999999999999999874 449999999
Q ss_pred cc-----ccccccCCchhHHH-------HHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-------
Q 013316 247 TD-----LVGEFVGHTGPKTR-------RRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------- 307 (445)
Q Consensus 247 ~~-----l~~~~~g~~~~~~~-------~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------- 307 (445)
+. +.+++|||....++ ..|+.|.||+|||||| ++++...|.+||+.++++
T Consensus 283 AAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEI-----------GelPL~lQaKLLRvLQegEieRvG~ 351 (550)
T COG3604 283 AALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEI-----------GELPLALQAKLLRVLQEGEIERVGG 351 (550)
T ss_pred cccchHHHHHHHhcccccccccchhccCcceeecCCCeEechhh-----------ccCCHHHHHHHHHHHhhcceeecCC
Confidence 98 56779999443333 3678889999999999 666669999999999864
Q ss_pred ------cEEEEEecCchhHHHHHhh--Ccccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccH
Q 013316 308 ------KVVVIFAGYSEPMKRVIAS--NEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSM 376 (445)
Q Consensus 308 ------~~~~i~a~~~~~~~~~~~~--~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 376 (445)
++.+|+|||.+....+.+. ...|..|+. .-|.+||+. ++|+..+..+|+.+...+.+.. ...+++
T Consensus 352 ~r~ikVDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~----~l~ls~ 427 (550)
T COG3604 352 DRTIKVDVRVIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRA----ILSLSA 427 (550)
T ss_pred CceeEEEEEEEeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCc----ccccCH
Confidence 3688888888766544311 133445775 446777776 7999999999999988776643 446677
Q ss_pred HHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 377 DAIAALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 377 ~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
+++..++.+.| |||+|+|++++++|.-
T Consensus 428 ~Al~~L~~y~w------PGNVRELen~veRavl 454 (550)
T COG3604 428 EALELLSSYEW------PGNVRELENVVERAVL 454 (550)
T ss_pred HHHHHHHcCCC------CCcHHHHHHHHHHHHH
Confidence 89999998887 9999999999999954
No 44
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.91 E-value=6.5e-24 Score=223.28 Aligned_cols=246 Identities=21% Similarity=0.319 Sum_probs=184.0
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
...|++|+|.+.+++.+++++. ++..+++.+...+..++.++||+||||||||++|+++|+.++. +|+.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~-------~~i~i 243 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVE---LPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA-------YFISI 243 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC-------eEEEE
Confidence 3468889999999999998654 4455566655666778899999999999999999999999876 89999
Q ss_pred ecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----CcEEEEEecCc
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYS 317 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~i~a~~~ 317 (445)
+++.+.+.+.|+++..++.+|+.+. ++||||||||.+.++++...++...++++.|+..|+. +.+++|++|+.
T Consensus 244 ~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~ 323 (733)
T TIGR01243 244 NGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNR 323 (733)
T ss_pred ecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCC
Confidence 9999999999999999999998763 4899999999999988765566677888999988864 56778877665
Q ss_pred hhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316 318 EPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 395 (445)
Q Consensus 318 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 395 (445)
... .||++++ ||+..+.|+.|+.+++.+|++.+.+.. .+..+.+.+.++.....+.
T Consensus 324 ~~~-----ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~---------~l~~d~~l~~la~~t~G~~-------- 381 (733)
T TIGR01243 324 PDA-----LDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM---------PLAEDVDLDKLAEVTHGFV-------- 381 (733)
T ss_pred hhh-----cCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC---------CCccccCHHHHHHhCCCCC--------
Confidence 432 3899887 999999999999999999999776653 3344555556665554444
Q ss_pred CchhhHHHHHHHHHhhhhhhcc-CC-------C--ChhhhhhccHHHHHHHHHHHHhc
Q 013316 396 NGGLVDPMLVNARENLDLRLSF-DC-------L--DTDELRTITLEDLEAGLKLLLRL 443 (445)
Q Consensus 396 n~r~l~~~~~~~~~~~~~~~~~-~~-------~--~~~~~~~i~~~d~~~a~~~~~~~ 443 (445)
++++..++..+......+... .. . .......++.+|+..+++.+.|.
T Consensus 382 -gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps 438 (733)
T TIGR01243 382 -GADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPS 438 (733)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhcccc
Confidence 344455555443333222211 00 0 01133468899999999877664
No 45
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.91 E-value=5.9e-24 Score=184.24 Aligned_cols=183 Identities=24% Similarity=0.312 Sum_probs=124.1
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++||++++..+.-+++..+. ......|++||||||+||||+|+.||++++. +|...+.
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~-----------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~-------~~~~~sg 83 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKK-----------RGEALDHMLFYGPPGLGKTTLARIIANELGV-------NFKITSG 83 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHC-----------TTS---EEEEESSTTSSHHHHHHHHHHHCT---------EEEEEC
T ss_pred CHHHccCcHHHHhhhHHHHHHHHh-----------cCCCcceEEEECCCccchhHHHHHHHhccCC-------CeEeccc
Confidence 577899999999998876665431 1345679999999999999999999999887 7777776
Q ss_pred ccccccccCCchhHHHHHHHHc-cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc-----------------
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK----------------- 308 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------- 308 (445)
+.+. ....+..++... ++.||||||||++.+ ..++.|+..|+++.
T Consensus 84 ~~i~------k~~dl~~il~~l~~~~ILFIDEIHRlnk-----------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~ 146 (233)
T PF05496_consen 84 PAIE------KAGDLAAILTNLKEGDILFIDEIHRLNK-----------AQQEILLPAMEDGKIDIIIGKGPNARSIRIN 146 (233)
T ss_dssp CC--------SCHHHHHHHHT--TT-EEEECTCCC--H-----------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE
T ss_pred hhhh------hHHHHHHHHHhcCCCcEEEEechhhccH-----------HHHHHHHHHhccCeEEEEeccccccceeecc
Confidence 5442 234455555443 568999999999987 67788999999754
Q ss_pred ---EEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHH
Q 013316 309 ---VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 385 (445)
Q Consensus 309 ---~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 385 (445)
+.+|+|||..... .++|++||....++..|+.+|+.+|++...... ..+++.++.. .++.
T Consensus 147 l~~FTligATTr~g~l-----s~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l-----------~i~i~~~~~~-~Ia~ 209 (233)
T PF05496_consen 147 LPPFTLIGATTRAGLL-----SSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL-----------NIEIDEDAAE-EIAR 209 (233)
T ss_dssp ----EEEEEESSGCCT-----SHCCCTTSSEEEE----THHHHHHHHHHCCHCT-----------T-EE-HHHHH-HHHH
T ss_pred CCCceEeeeecccccc-----chhHHhhcceecchhcCCHHHHHHHHHHHHHHh-----------CCCcCHHHHH-HHHH
Confidence 4667777665443 688999998888999999999999998765543 3345555544 5666
Q ss_pred HHHHhhhcccCchhhHHHHHHH
Q 013316 386 ETTEKQRREMNGGLVDPMLVNA 407 (445)
Q Consensus 386 ~~~~~~~~~~n~r~l~~~~~~~ 407 (445)
.+ -|..|.+.+++.++
T Consensus 210 rs------rGtPRiAnrll~rv 225 (233)
T PF05496_consen 210 RS------RGTPRIANRLLRRV 225 (233)
T ss_dssp CT------TTSHHHHHHHHHHH
T ss_pred hc------CCChHHHHHHHHHH
Confidence 66 56677778888877
No 46
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.91 E-value=1.2e-23 Score=216.56 Aligned_cols=235 Identities=20% Similarity=0.292 Sum_probs=179.8
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeE
Q 013316 163 ELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 242 (445)
Q Consensus 163 ~~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~ 242 (445)
.....|.++.|.+..++++.+.+.....+..... .+...+.+++|+||||||||++|++++..++. +|+
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~----~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~-------~f~ 214 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQK----LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-------PFF 214 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHh----cCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC-------CEE
Confidence 4556788999999999999987766544433332 33456778999999999999999999998876 999
Q ss_pred EeecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccC----CcEEEE
Q 013316 243 EVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVI 312 (445)
Q Consensus 243 ~~~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~~~~i 312 (445)
.++++++...++|.+...++.+|..+ .++||||||||.+..+++.+ +.......++.|+..|++ ..+++|
T Consensus 215 ~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivI 294 (644)
T PRK10733 215 TISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVI 294 (644)
T ss_pred EEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEE
Confidence 99999999999999999999999876 45899999999999877642 234455788899888874 457788
Q ss_pred EecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHh
Q 013316 313 FAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEK 390 (445)
Q Consensus 313 ~a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 390 (445)
++|+..... ||++++ |||+.|.|+.|+.+++.+|++.++.+. .+.++++...++..+.+
T Consensus 295 aaTN~p~~l-----D~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~---------~l~~~~d~~~la~~t~G----- 355 (644)
T PRK10733 295 AATNRPDVL-----DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV---------PLAPDIDAAIIARGTPG----- 355 (644)
T ss_pred EecCChhhc-----CHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC---------CCCCcCCHHHHHhhCCC-----
Confidence 887755433 899987 999999999999999999999999874 34455555555444333
Q ss_pred hhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316 391 QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440 (445)
Q Consensus 391 ~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 440 (445)
.+++++.+++.+|...... .+...|+.+|+.+|+..+
T Consensus 356 ----~sgadl~~l~~eAa~~a~r---------~~~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 356 ----FSGADLANLVNEAALFAAR---------GNKRVVSMVEFEKAKDKI 392 (644)
T ss_pred ----CCHHHHHHHHHHHHHHHHH---------cCCCcccHHHHHHHHHHH
Confidence 3578888888887443221 123468888888887655
No 47
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.89 E-value=1.4e-22 Score=191.81 Aligned_cols=207 Identities=22% Similarity=0.284 Sum_probs=164.8
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
..+.+++|.+...+++++.++.. +....+||++|++||||+.+|+.||..+.+. ..+||+.+|
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~--------------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~---~~~PFI~~N 137 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAY--------------APSGLPVLIIGETGTGKELFARLIHALSARR---AEAPFIAFN 137 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhh--------------CCCCCcEEEecCCCccHHHHHHHHHHhhhcc---cCCCEEEEE
Confidence 35677999999999988877653 4567799999999999999999999666552 466999999
Q ss_pred ccccc-----ccccCCch-------hHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC------
Q 013316 246 RTDLV-----GEFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------ 307 (445)
Q Consensus 246 ~~~l~-----~~~~g~~~-------~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------ 307 (445)
|+.+. .++||+.. ..-..+|+.|.||+||||||+.+.+ +.|..|++.+|++
T Consensus 138 Ca~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~-----------~~Q~kLl~~le~g~~~rvG 206 (403)
T COG1221 138 CAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPP-----------EGQEKLLRVLEEGEYRRVG 206 (403)
T ss_pred HHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCH-----------hHHHHHHHHHHcCceEecC
Confidence 99854 34677522 2234589999999999999987776 8889999999873
Q ss_pred -------cEEEEEecCchhHHHHHhhCccccc-ccccceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccHH
Q 013316 308 -------KVVVIFAGYSEPMKRVIASNEGFCR-RVTKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD 377 (445)
Q Consensus 308 -------~~~~i~a~~~~~~~~~~~~~~~l~~-R~~~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 377 (445)
++.+|+||+.+.-..++.. ..|.+ |+...|.+|++. ..|+..++++|++.+..+++. .+.. .+++
T Consensus 207 ~~~~~~~dVRli~AT~~~l~~~~~~g-~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~---~~~~-~~~~ 281 (403)
T COG1221 207 GSQPRPVDVRLICATTEDLEEAVLAG-ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGL---PLSV-DSPE 281 (403)
T ss_pred CCCCcCCCceeeeccccCHHHHHHhh-cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCC---CCCC-CCHH
Confidence 4689999988877766553 45666 677889999998 789999999999998776553 3322 2368
Q ss_pred HHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhh
Q 013316 378 AIAALIEKETTEKQRREMNGGLVDPMLVNARENL 411 (445)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~ 411 (445)
++..+..+.| |||.|+|+|+|++++-..
T Consensus 282 a~~~L~~y~~------pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 282 ALRALLAYDW------PGNIRELKNLVERAVAQA 309 (403)
T ss_pred HHHHHHhCCC------CCcHHHHHHHHHHHHHHh
Confidence 8999999988 999999999999997655
No 48
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.88 E-value=1.7e-21 Score=171.89 Aligned_cols=188 Identities=21% Similarity=0.259 Sum_probs=140.0
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
+.|++.+||..+|+++.=++...+.. ....-|+|||||||.||||+|..||.+++..-.+.++|.++
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r-----------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le-- 89 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKR-----------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE-- 89 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhc-----------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc--
Confidence 46788999999999999887766532 55677999999999999999999999998733333444332
Q ss_pred cccccccccCCchhHHHHHHHHc-cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-----------------
Q 013316 246 RTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----------------- 307 (445)
Q Consensus 246 ~~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~----------------- 307 (445)
-+..+..++..- ++-||||||||++.+ .+-+.|...|++.
T Consensus 90 -----------K~gDlaaiLt~Le~~DVLFIDEIHrl~~-----------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~l 147 (332)
T COG2255 90 -----------KPGDLAAILTNLEEGDVLFIDEIHRLSP-----------AVEEVLYPAMEDFRLDIIIGKGPAARSIRL 147 (332)
T ss_pred -----------ChhhHHHHHhcCCcCCeEEEehhhhcCh-----------hHHHHhhhhhhheeEEEEEccCCccceEec
Confidence 233444555444 568999999999997 5556688888862
Q ss_pred ---cEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHH
Q 013316 308 ---KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 384 (445)
Q Consensus 308 ---~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 384 (445)
.+.+|+|||..... ..+|++||....++..|+.+|+.+|+......+ ..+++.++.. .++
T Consensus 148 dLppFTLIGATTr~G~l-----t~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l-----------~i~i~~~~a~-eIA 210 (332)
T COG2255 148 DLPPFTLIGATTRAGML-----TNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL-----------GIEIDEEAAL-EIA 210 (332)
T ss_pred cCCCeeEeeeccccccc-----cchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh-----------CCCCChHHHH-HHH
Confidence 36889998877665 567999999999999999999999999876543 3456666655 555
Q ss_pred HHHHHhhhcccCchhhHHHHHHHHHhh
Q 013316 385 KETTEKQRREMNGGLVDPMLVNARENL 411 (445)
Q Consensus 385 ~~~~~~~~~~~n~r~l~~~~~~~~~~~ 411 (445)
+.+ -|-.|...+++.+.+..+
T Consensus 211 ~rS------RGTPRIAnRLLrRVRDfa 231 (332)
T COG2255 211 RRS------RGTPRIANRLLRRVRDFA 231 (332)
T ss_pred Hhc------cCCcHHHHHHHHHHHHHH
Confidence 665 445566666666664443
No 49
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.88 E-value=2.5e-22 Score=182.22 Aligned_cols=222 Identities=21% Similarity=0.294 Sum_probs=154.7
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
..+++.+||+.+..+ .-+++.. +.....+.|+|+||||||||++||.|+.-...+- -.|++++
T Consensus 135 ktL~dyvGQ~hlv~q-~gllrs~------------ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelS 197 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQ-DGLLRSL------------IEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELS 197 (554)
T ss_pred chHHHhcchhhhcCc-chHHHHH------------HHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEe
Confidence 356667777766544 1111111 1145667899999999999999999998776522 2577777
Q ss_pred cccccccccCCchhHHHHHHHHcc--------CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316 246 RTDLVGEFVGHTGPKTRRRIKEAE--------GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 317 (445)
Q Consensus 246 ~~~l~~~~~g~~~~~~~~~~~~a~--------~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~ 317 (445)
+..- ....++++|++++ ..||||||||++...+ |+.||..++.|.|++|+||+.
T Consensus 198 At~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQ-----------QD~fLP~VE~G~I~lIGATTE 259 (554)
T KOG2028|consen 198 ATNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQ-----------QDTFLPHVENGDITLIGATTE 259 (554)
T ss_pred cccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhh-----------hhcccceeccCceEEEecccC
Confidence 6554 4567888998874 3899999999998744 578999999999999999998
Q ss_pred hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCC---cccHHHHHHHHHHHHHHhhhcc
Q 013316 318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHS---SCSMDAIAALIEKETTEKQRRE 394 (445)
Q Consensus 318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~ 394 (445)
++.-.+ +.+|.+|| .++.+.+++.+....|+.+.+.-...... ....++. .++. .+.+.++..+.||.|..
T Consensus 260 NPSFql---n~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser-~~~~l~n~s~~ve~-siidyla~lsdGDaR~a 333 (554)
T KOG2028|consen 260 NPSFQL---NAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSER-PTDPLPNSSMFVED-SIIDYLAYLSDGDARAA 333 (554)
T ss_pred CCccch---hHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccc-cCCCCCCcchhhhH-HHHHHHHHhcCchHHHH
Confidence 887655 78899999 99999999999999999987663321111 1112211 2333 44557778888888888
Q ss_pred cCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316 395 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 439 (445)
Q Consensus 395 ~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 439 (445)
.|+-++..-+ .-.| ........++.+|++++++.
T Consensus 334 LN~Lems~~m------~~tr-----~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 334 LNALEMSLSM------FCTR-----SGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred HHHHHHHHHH------HHhh-----cCCcccceecHHHHHHHHhh
Confidence 8875544111 1111 11123457999999998874
No 50
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.88 E-value=3e-22 Score=190.06 Aligned_cols=203 Identities=17% Similarity=0.209 Sum_probs=155.4
Q ss_pred hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 013316 171 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 250 (445)
Q Consensus 171 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~ 250 (445)
|+|.++.++.+.+.+..+ +....+|||+|++||||+++|++||..+.+ ...+|+.++|+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~--------------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r----~~~pfv~vnc~~~~ 62 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL--------------APLDRPVLIIGERGTGKELIAARLHYLSKR----WQGPLVKLNCAALS 62 (329)
T ss_pred CCcCCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCChHHHHHHHHHHhcCc----cCCCeEEEeCCCCC
Confidence 578898888888877655 456789999999999999999999998765 34499999998753
Q ss_pred -----ccccCCchh-------HHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc----------
Q 013316 251 -----GEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------- 308 (445)
Q Consensus 251 -----~~~~g~~~~-------~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---------- 308 (445)
+.+||+... .....|+.+.+|+||||||+.+.. ..|..|+..++.+.
T Consensus 63 ~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~ 131 (329)
T TIGR02974 63 ENLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASL-----------LVQEKLLRVIEYGEFERVGGSQTL 131 (329)
T ss_pred hHHHHHHHhccccccccCcccccCCchhhCCCCEEEeCChHhCCH-----------HHHHHHHHHHHcCcEEecCCCcee
Confidence 345665322 123468889999999999988876 78889999887643
Q ss_pred ---EEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccHHHHH
Q 013316 309 ---VVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 380 (445)
Q Consensus 309 ---~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 380 (445)
+.+|++++.+...... ...+.|..||. ..|.+|++. .+|+..++++|+.+.....+. .....++++++.
T Consensus 132 ~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~---~~~~~ls~~a~~ 208 (329)
T TIGR02974 132 QVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGL---PLFPGFTPQARE 208 (329)
T ss_pred ccceEEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCC---CCCCCcCHHHHH
Confidence 5777777665433221 11366778884 678999998 799999999999886544331 111468899999
Q ss_pred HHHHHHHHHhhhcccCchhhHHHHHHHHHhh
Q 013316 381 ALIEKETTEKQRREMNGGLVDPMLVNARENL 411 (445)
Q Consensus 381 ~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~ 411 (445)
.+..+.| |||.|+|+++++++....
T Consensus 209 ~L~~y~W------PGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 209 QLLEYHW------PGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHhCCC------CchHHHHHHHHHHHHHhC
Confidence 9999888 999999999999986643
No 51
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.88 E-value=1.9e-21 Score=204.05 Aligned_cols=244 Identities=17% Similarity=0.224 Sum_probs=174.7
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcC---CCCCCCeEE
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTE 243 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~---~~~~~~~~~ 243 (445)
.++.++|+++...++.+.+. .....+++|+||||||||++|+.+|+.+.... .+....++.
T Consensus 180 ~l~~~igr~~ei~~~~~~L~----------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLC----------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred CCCcccCcHHHHHHHHHHHh----------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 45679999988776665332 33567899999999999999999999884422 233557889
Q ss_pred eeccccc--ccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCch
Q 013316 244 VQRTDLV--GEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE 318 (445)
Q Consensus 244 ~~~~~l~--~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~ 318 (445)
++++.+. .+|.|+.+..++++|+++ .++||||||||.+.+.+...+++ .++.+.|...++++.+.+|++||..
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~--~~~~~~L~~~l~~g~i~~IgaTt~~ 321 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS--MDASNLLKPALSSGKLRCIGSTTYE 321 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc--HHHHHHHHHHHhCCCeEEEEecCHH
Confidence 9988887 468999999999999875 35899999999999765432222 2466778888999999999999998
Q ss_pred hHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCch
Q 013316 319 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG 398 (445)
Q Consensus 319 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r 398 (445)
.+...++.|++|+||| ..|.|+.|+.+++.+|++....++... ....++++++.... ..+..+.....-.+
T Consensus 322 e~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~e~~-------~~v~i~~~al~~~~-~ls~ryi~~r~~P~ 392 (731)
T TIGR02639 322 EYKNHFEKDRALSRRF-QKIDVGEPSIEETVKILKGLKEKYEEF-------HHVKYSDEALEAAV-ELSARYINDRFLPD 392 (731)
T ss_pred HHHHHhhhhHHHHHhC-ceEEeCCCCHHHHHHHHHHHHHHHHhc-------cCcccCHHHHHHHH-HhhhcccccccCCH
Confidence 8888888899999999 589999999999999999877654211 12356677776544 33322222212233
Q ss_pred hhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHh
Q 013316 399 LVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 442 (445)
Q Consensus 399 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 442 (445)
....+++.+......+. .......|+.+||.+++..+.-
T Consensus 393 kai~lld~a~a~~~~~~-----~~~~~~~v~~~~i~~~i~~~tg 431 (731)
T TIGR02639 393 KAIDVIDEAGASFRLRP-----KAKKKANVSVKDIENVVAKMAH 431 (731)
T ss_pred HHHHHHHHhhhhhhcCc-----ccccccccCHHHHHHHHHHHhC
Confidence 34555665543322211 1112346999999999987643
No 52
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.87 E-value=1.6e-22 Score=216.83 Aligned_cols=199 Identities=11% Similarity=0.132 Sum_probs=141.9
Q ss_pred CCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccc----------cCC------------
Q 013316 199 LKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF----------VGH------------ 256 (445)
Q Consensus 199 ~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~----------~g~------------ 256 (445)
+.++..+|.+||++||||||||.+||++|.+++. ||+.++++++.+.+ +|+
T Consensus 1623 lrLGl~pPKGILLiGPPGTGKTlLAKALA~es~V-------PFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~ 1695 (2281)
T CHL00206 1623 LRLALSPSRGILVIGSIGTGRSYLVKYLATNSYV-------PFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDR 1695 (2281)
T ss_pred HHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCC-------ceEEEEHHHHhhccccccccccccccccccccccccccc
Confidence 4466788999999999999999999999999887 99999999988654 121
Q ss_pred -------------------ch--hHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC------
Q 013316 257 -------------------TG--PKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------ 306 (445)
Q Consensus 257 -------------------~~--~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------ 306 (445)
+. ..++.+|+.| .+|||||||||.+..+.. . ...++.|+..|++
T Consensus 1696 ~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds---~---~ltL~qLLneLDg~~~~~s 1769 (2281)
T CHL00206 1696 DLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES---N---YLSLGLLVNSLSRDCERCS 1769 (2281)
T ss_pred ccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc---c---eehHHHHHHHhccccccCC
Confidence 11 2367788877 469999999999997522 1 1235777777763
Q ss_pred -CcEEEEEecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCc-ccHHHHHHH
Q 013316 307 -GKVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSS-CSMDAIAAL 382 (445)
Q Consensus 307 -~~~~~i~a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~ 382 (445)
..++||+||+..+.. ||||+| |||+.|.++.|+..++.+++...+... ++.+... ++.+.++..
T Consensus 1770 ~~~VIVIAATNRPD~L-----DPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tk-------g~~L~~~~vdl~~LA~~ 1837 (2281)
T CHL00206 1770 TRNILVIASTHIPQKV-----DPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTR-------GFHLEKKMFHTNGFGSI 1837 (2281)
T ss_pred CCCEEEEEeCCCcccC-----CHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhc-------CCCCCcccccHHHHHHh
Confidence 357888887765543 999998 999999999999999998887543221 1222222 345555555
Q ss_pred HHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316 383 IEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440 (445)
Q Consensus 383 ~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 440 (445)
+.++ +|+++.+++.+|......+ +...|+.+++..|+...
T Consensus 1838 T~Gf---------SGADLanLvNEAaliAirq---------~ks~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1838 TMGS---------NARDLVALTNEALSISITQ---------KKSIIDTNTIRSALHRQ 1877 (2281)
T ss_pred CCCC---------CHHHHHHHHHHHHHHHHHc---------CCCccCHHHHHHHHHHH
Confidence 4444 4788888888773322221 22368888888888764
No 53
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.87 E-value=5.7e-21 Score=180.87 Aligned_cols=166 Identities=16% Similarity=0.215 Sum_probs=118.4
Q ss_pred cCcEEEEcCccccccCCCCCCchhHH-HHHHHHHhhccC------------CcEEEEEecCchhHHHHHhhCcccccccc
Q 013316 269 EGGILFVDEAYRLIPMQKADDKDYGI-EALEEIMSVMDG------------GKVVVIFAGYSEPMKRVIASNEGFCRRVT 335 (445)
Q Consensus 269 ~~~il~lDEid~l~~~~~~~~~~~~~-~~~~~ll~~~~~------------~~~~~i~a~~~~~~~~~~~~~~~l~~R~~ 335 (445)
+.|||||||||+++.+..+.+.+.+. -+|+.||..+++ ..+.+|+++.-... .+-..-|.|..||+
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~-kp~DlIPEl~GR~P 325 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLA-KPSDLIPELQGRFP 325 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCC-ChhhccHHHhCccc
Confidence 56999999999999876444444444 488889999987 45788887752211 11112599999999
Q ss_pred cceeCCCCCHHHHHHHH----HHHHhcccccccccccccCCcccHHHHHHHHHHHHH--HhhhcccCchhhHHHHHHHHH
Q 013316 336 KFFHFNDFNSEELAKIL----HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT--EKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 336 ~~i~~~~~~~~~~~~il----~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~n~r~l~~~~~~~~~ 409 (445)
..+.+.+++.+++..|| ...++++..-+..+++.+ .++++++.++...... ...+..| +|-|+.++++...
T Consensus 326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L--~Ftd~Al~~IA~~A~~~N~~~~~iG-AR~LrtilE~~l~ 402 (441)
T TIGR00390 326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNI--EFSDEAIKRIAELAYNVNEKTENIG-ARRLHTVLERLLE 402 (441)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEE--EEeHHHHHHHHHHHHHhcccccccc-hhhHHHHHHHHHH
Confidence 99999999999999999 556777766666676665 7889999987766553 2234455 8999999999855
Q ss_pred hhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316 410 NLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 441 (445)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 441 (445)
....-.- . .......|+.+-+.+.++.+.
T Consensus 403 d~~fe~p--~-~~~~~v~I~~~~V~~~l~~~~ 431 (441)
T TIGR00390 403 DISFEAP--D-LSGQNITIDADYVSKKLGALV 431 (441)
T ss_pred HHHhcCC--C-CCCCEEEECHHHHHhHHHHHH
Confidence 4433221 1 123456889888888777653
No 54
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.87 E-value=2.1e-21 Score=195.61 Aligned_cols=213 Identities=21% Similarity=0.265 Sum_probs=153.9
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC--CC-CCCeE
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI--LP-TDRVT 242 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~--~~-~~~~~ 242 (445)
..|++++|+++.++.++..+ ....+.++||+||||||||++||++++.+.+... .. ..+|+
T Consensus 62 ~~f~~iiGqs~~i~~l~~al----------------~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi 125 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAAL----------------CGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFV 125 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHH----------------hCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEE
Confidence 45788999999988887531 1345779999999999999999999998765322 11 35899
Q ss_pred Eeecccc-------cccccC--------------Cch--hHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHH
Q 013316 243 EVQRTDL-------VGEFVG--------------HTG--PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEE 299 (445)
Q Consensus 243 ~~~~~~l-------~~~~~g--------------~~~--~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ 299 (445)
+++|+.. ...++| .++ ......+..+.+++|||||||.+.+ ..|+.
T Consensus 126 ~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~-----------~~q~~ 194 (531)
T TIGR02902 126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP-----------VQMNK 194 (531)
T ss_pred EEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH-----------HHHHH
Confidence 9998641 111222 111 1123367788999999999999987 77888
Q ss_pred HHhhccCC------------------------------cEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHH
Q 013316 300 IMSVMDGG------------------------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELA 349 (445)
Q Consensus 300 ll~~~~~~------------------------------~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~ 349 (445)
|++.|+++ ++.+|++|++.+.. .+|++++|| ..+.|++|+.+|+.
T Consensus 195 LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~----L~paLrsR~-~~I~f~pL~~eei~ 269 (531)
T TIGR02902 195 LLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEE----IPPALRSRC-VEIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCccc----CChHHhhhh-heeeCCCCCHHHHH
Confidence 88777642 24677787766543 389999998 78899999999999
Q ss_pred HHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhcc
Q 013316 350 KILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTIT 429 (445)
Q Consensus 350 ~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 429 (445)
+|+++.+++.. ..++++++..+. .+. .|+|++.++++.|...... ++...|+
T Consensus 270 ~Il~~~a~k~~-----------i~is~~al~~I~-~y~-------~n~Rel~nll~~Aa~~A~~---------~~~~~It 321 (531)
T TIGR02902 270 EIAKNAAEKIG-----------INLEKHALELIV-KYA-------SNGREAVNIVQLAAGIALG---------EGRKRIL 321 (531)
T ss_pred HHHHHHHHHcC-----------CCcCHHHHHHHH-Hhh-------hhHHHHHHHHHHHHHHHhh---------CCCcEEc
Confidence 99999888642 256777877444 332 2789999999998543211 1234799
Q ss_pred HHHHHHHHH
Q 013316 430 LEDLEAGLK 438 (445)
Q Consensus 430 ~~d~~~a~~ 438 (445)
.+|+++++.
T Consensus 322 ~~dI~~vl~ 330 (531)
T TIGR02902 322 AEDIEWVAE 330 (531)
T ss_pred HHHHHHHhC
Confidence 999999885
No 55
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.87 E-value=8.2e-21 Score=179.91 Aligned_cols=165 Identities=16% Similarity=0.215 Sum_probs=117.9
Q ss_pred cCcEEEEcCccccccCCCCCCchhHH-HHHHHHHhhccC------------CcEEEEEecCchhHHHHHhhCcccccccc
Q 013316 269 EGGILFVDEAYRLIPMQKADDKDYGI-EALEEIMSVMDG------------GKVVVIFAGYSEPMKRVIASNEGFCRRVT 335 (445)
Q Consensus 269 ~~~il~lDEid~l~~~~~~~~~~~~~-~~~~~ll~~~~~------------~~~~~i~a~~~~~~~~~~~~~~~l~~R~~ 335 (445)
+.|||||||||+|+.+.++.+.+.+. -+|..||..+++ ..+.+|+++.-... ..-..-|.|..||+
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~-kp~DlIPEl~GR~P 327 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVS-KPSDLIPELQGRFP 327 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCC-ChhhccHHHhCccc
Confidence 56999999999999875433444444 488889999987 46788888752211 11112599999999
Q ss_pred cceeCCCCCHHHHHHHH----HHHHhcccccccccccccCCcccHHHHHHHHHHHHH--HhhhcccCchhhHHHHHHHHH
Q 013316 336 KFFHFNDFNSEELAKIL----HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT--EKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 336 ~~i~~~~~~~~~~~~il----~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~n~r~l~~~~~~~~~ 409 (445)
.++.+.+++.+++..|| ...++++..-+..+++.+ .++++++.++...... ...+..| +|-|+.++|+...
T Consensus 328 i~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L--~Ftd~Al~~IA~~A~~~N~~~~~iG-AR~LrtI~E~~L~ 404 (443)
T PRK05201 328 IRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTL--EFTDDAIRRIAEIAYQVNEKTENIG-ARRLHTVMEKLLE 404 (443)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEE--EEcHHHHHHHHHHHHHhcccccccc-hhhHHHHHHHHHH
Confidence 99999999999999999 557777766677676665 7889999987766653 2234556 9999999999955
Q ss_pred hhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316 410 NLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440 (445)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 440 (445)
....-.- .. ......|+.+-+...++.+
T Consensus 405 d~~Fe~p--~~-~~~~v~I~~~~V~~~l~~l 432 (443)
T PRK05201 405 DISFEAP--DM-SGETVTIDAAYVDEKLGDL 432 (443)
T ss_pred HHhccCC--CC-CCCEEEECHHHHHHHHHHH
Confidence 4332221 11 2345678888888777654
No 56
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.86 E-value=1.8e-21 Score=185.02 Aligned_cols=205 Identities=17% Similarity=0.187 Sum_probs=156.4
Q ss_pred HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 013316 168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 247 (445)
Q Consensus 168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~ 247 (445)
+++++|.++.++.+.+.+..+ +....+|+|+|++||||+++|++||..+.+ ...+|+.++|+
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~--------------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r----~~~pfv~v~c~ 66 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL--------------APLDKPVLIIGERGTGKELIASRLHYLSSR----WQGPFISLNCA 66 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCCcHHHHHHHHHHhCCc----cCCCeEEEeCC
Confidence 456999999999999877766 456789999999999999999999987654 34499999999
Q ss_pred ccc-----ccccCCchh-------HHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC--------
Q 013316 248 DLV-----GEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------- 307 (445)
Q Consensus 248 ~l~-----~~~~g~~~~-------~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------- 307 (445)
.+. +.+||+... .....|..+.+|+|||||||.+.. ..|..|+..++.+
T Consensus 67 ~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~-----------~~Q~~L~~~l~~~~~~~~g~~ 135 (326)
T PRK11608 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM-----------LVQEKLLRVIEYGELERVGGS 135 (326)
T ss_pred CCCHHHHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCH-----------HHHHHHHHHHhcCcEEeCCCC
Confidence 863 446665321 123467889999999999999887 7788888888753
Q ss_pred -----cEEEEEecCchhHHHHH--hhCccccccc-ccceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccHH
Q 013316 308 -----KVVVIFAGYSEPMKRVI--ASNEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD 377 (445)
Q Consensus 308 -----~~~~i~a~~~~~~~~~~--~~~~~l~~R~-~~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 377 (445)
++.+|++++.+...... ...+.|..|| ...|.+|++. .+|+..++++++.+....++. ...+.++++
T Consensus 136 ~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~---~~~~~~s~~ 212 (326)
T PRK11608 136 QPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGL---PLFPGFTER 212 (326)
T ss_pred ceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCC---CCCCCCCHH
Confidence 25677776655432221 1236677788 4678999998 589999999999886544331 112468899
Q ss_pred HHHHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316 378 AIAALIEKETTEKQRREMNGGLVDPMLVNAREN 410 (445)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~ 410 (445)
++..+..+.| |||.|+|+++++++...
T Consensus 213 al~~L~~y~W------PGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 213 ARETLLNYRW------PGNIRELKNVVERSVYR 239 (326)
T ss_pred HHHHHHhCCC------CcHHHHHHHHHHHHHHh
Confidence 9999999888 99999999999998653
No 57
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.85 E-value=5.1e-20 Score=181.33 Aligned_cols=182 Identities=25% Similarity=0.360 Sum_probs=137.7
Q ss_pred HHHhhhcchHHHHH---HHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316 167 ELSNIVGLHELKIQ---LRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 243 (445)
Q Consensus 167 ~~~~l~g~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~ 243 (445)
.+++++|++++... +.+++. .....+++|+||||||||++|+.+++.+.. .|+.
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~----------------~~~~~~ilL~GppGtGKTtLA~~ia~~~~~-------~~~~ 66 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIE----------------AGRLSSMILWGPPGTGKTTLARIIAGATDA-------PFEA 66 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHH----------------cCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CEEE
Confidence 56789999988665 665442 234568999999999999999999998765 7888
Q ss_pred eecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecC
Q 013316 244 VQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY 316 (445)
Q Consensus 244 ~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~ 316 (445)
++++.. +...++++++.+ ++.||||||||.+.. ..++.|+..++++.+++|++|+
T Consensus 67 l~a~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~-----------~~q~~LL~~le~~~iilI~att 128 (413)
T PRK13342 67 LSAVTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK-----------AQQDALLPHVEDGTITLIGATT 128 (413)
T ss_pred Eecccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH-----------HHHHHHHHHhhcCcEEEEEeCC
Confidence 877532 233455555544 568999999998875 5678889999999999999988
Q ss_pred chhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccC
Q 013316 317 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 396 (445)
Q Consensus 317 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n 396 (445)
.++...+ ++++++|| ..+.|++++.+++..+++..+.+... ++ ..++++++..+. ..+ .||
T Consensus 129 ~n~~~~l---~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~-----~~---i~i~~~al~~l~-~~s------~Gd 189 (413)
T PRK13342 129 ENPSFEV---NPALLSRA-QVFELKPLSEEDIEQLLKRALEDKER-----GL---VELDDEALDALA-RLA------NGD 189 (413)
T ss_pred CChhhhc---cHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhc-----CC---CCCCHHHHHHHH-HhC------CCC
Confidence 7665443 89999999 88999999999999999998876321 11 245666766554 444 577
Q ss_pred chhhHHHHHHHH
Q 013316 397 GGLVDPMLVNAR 408 (445)
Q Consensus 397 ~r~l~~~~~~~~ 408 (445)
.|.+.++++.+.
T Consensus 190 ~R~aln~Le~~~ 201 (413)
T PRK13342 190 ARRALNLLELAA 201 (413)
T ss_pred HHHHHHHHHHHH
Confidence 888888888873
No 58
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.85 E-value=7.7e-21 Score=189.53 Aligned_cols=201 Identities=16% Similarity=0.156 Sum_probs=149.4
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHH--------HHHcCCCCC
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRL--------LYMVGILPT 238 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~--------~~~~~~~~~ 238 (445)
.|++++|.++.++++.+.+..+ +....+|||+|++||||+++|++||.. +.+ ..
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~--------------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r----~~ 278 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLY--------------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGK----KS 278 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCcc----CC
Confidence 4778999999999998877655 456789999999999999999999997 333 34
Q ss_pred CCeEEeecccc-----cccccCCchhH--------HHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc
Q 013316 239 DRVTEVQRTDL-----VGEFVGHTGPK--------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 305 (445)
Q Consensus 239 ~~~~~~~~~~l-----~~~~~g~~~~~--------~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~ 305 (445)
.||+.++|+.+ .+.+||+.... -...|+.|.+|+||||||+.+.. ..|..|+..++
T Consensus 279 ~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~-----------~~Q~kLl~~L~ 347 (538)
T PRK15424 279 HPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPL-----------PLQTRLLRVLE 347 (538)
T ss_pred CCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCH-----------HHHHHHHhhhh
Confidence 59999999975 35577863321 23478899999999999988876 88899999997
Q ss_pred CCc-------------EEEEEecCchhHHHHHh--hCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccc
Q 013316 306 GGK-------------VVVIFAGYSEPMKRVIA--SNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYG 367 (445)
Q Consensus 306 ~~~-------------~~~i~a~~~~~~~~~~~--~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~ 367 (445)
++. +.+|++|+.+....+.+ -.+.|..|+. ..|.+|++. .+|+..++++++++.....+
T Consensus 348 e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~--- 424 (538)
T PRK15424 348 EKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALS--- 424 (538)
T ss_pred cCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcC---
Confidence 643 46777777665433211 1244555764 667888887 58999999999987533221
Q ss_pred cccCCcccHHHH-------HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 368 FKLHSSCSMDAI-------AALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 368 ~~~~~~~~~~~l-------~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
..++++++ ..+..+.| |||.|+|+++++++.-
T Consensus 425 ----~~~~~~a~~~~~~a~~~L~~y~W------PGNvREL~nvier~~i 463 (538)
T PRK15424 425 ----APFSAALRQGLQQCETLLLHYDW------PGNVRELRNLMERLAL 463 (538)
T ss_pred ----CCCCHHHHHhhHHHHHHHHhCCC------CchHHHHHHHHHHHHH
Confidence 12444443 55666666 9999999999999855
No 59
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.85 E-value=6.5e-20 Score=177.81 Aligned_cols=255 Identities=20% Similarity=0.312 Sum_probs=166.1
Q ss_pred HHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCC---CCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC
Q 013316 163 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLK---VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT 238 (445)
Q Consensus 163 ~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~ 238 (445)
++...|++ ++|++.+++.+...+.. +..+-..... ....+..++||+||||||||++|+++|..++.
T Consensus 64 ~i~~~L~~~ViGq~~ak~~l~~av~~---~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~------ 134 (412)
T PRK05342 64 EIKAHLDQYVIGQERAKKVLSVAVYN---HYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV------ 134 (412)
T ss_pred HHHHHHhhHeeChHHHHHHHHHHHHH---HHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC------
Confidence 34555654 89999999988653311 1111111110 11224578999999999999999999998876
Q ss_pred CCeEEeeccccc-ccccCCchhH-HHHH-------HHHccCcEEEEcCccccccCCCCC--Cchh-HHHHHHHHHhhccC
Q 013316 239 DRVTEVQRTDLV-GEFVGHTGPK-TRRR-------IKEAEGGILFVDEAYRLIPMQKAD--DKDY-GIEALEEIMSVMDG 306 (445)
Q Consensus 239 ~~~~~~~~~~l~-~~~~g~~~~~-~~~~-------~~~a~~~il~lDEid~l~~~~~~~--~~~~-~~~~~~~ll~~~~~ 306 (445)
+|+.++++.+. ..|+|+.... +..+ +..+.++||||||||++.+++.+. ..+. +..+|+.||+.|++
T Consensus 135 -pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg 213 (412)
T PRK05342 135 -PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEG 213 (412)
T ss_pred -CceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhc
Confidence 89999998875 3588875443 3333 345678999999999999864321 1222 23588899999974
Q ss_pred C-----------------------cEEEEEecCchhH----------------------------HHH---------H--
Q 013316 307 G-----------------------KVVVIFAGYSEPM----------------------------KRV---------I-- 324 (445)
Q Consensus 307 ~-----------------------~~~~i~a~~~~~~----------------------------~~~---------~-- 324 (445)
. ++.+|++++-... ..+ .
T Consensus 214 ~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~ 293 (412)
T PRK05342 214 TVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKF 293 (412)
T ss_pred CeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHH
Confidence 2 1223322210000 000 0
Q ss_pred hhCcccccccccceeCCCCCHHHHHHHHH----HHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhh
Q 013316 325 ASNEGFCRRVTKFFHFNDFNSEELAKILH----IKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLV 400 (445)
Q Consensus 325 ~~~~~l~~R~~~~i~~~~~~~~~~~~il~----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l 400 (445)
-..|+|..|+|.++.|.+++.+++..|+. ..+++....+..+++.+ .++++++.++++..+ .+..| +|-|
T Consensus 294 gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L--~~t~~al~~Ia~~~~---~~~~G-AR~L 367 (412)
T PRK05342 294 GLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVEL--EFTDEALEAIAKKAI---ERKTG-ARGL 367 (412)
T ss_pred hhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEE--EECHHHHHHHHHhCC---CCCCC-CchH
Confidence 02589999999999999999999999998 45555544444455544 778889888876643 23345 8999
Q ss_pred HHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHH
Q 013316 401 DPMLVNARENLDLRLSFDCLDTDELRTITLEDLEA 435 (445)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 435 (445)
+.++++.+......+... .......|+.+.+..
T Consensus 368 rriie~~l~~~~~~~p~~--~~~~~v~I~~~~v~~ 400 (412)
T PRK05342 368 RSILEEILLDVMFELPSR--EDVEKVVITKEVVEG 400 (412)
T ss_pred HHHHHHHhHHHHHhcccc--CCCceEEECHHHhcc
Confidence 999999977666544221 122345788887753
No 60
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.84 E-value=1.5e-20 Score=187.87 Aligned_cols=203 Identities=17% Similarity=0.149 Sum_probs=154.4
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
..|++++|.++.++.+.+.+..+ +....+|||+|++||||+++|++||..+.+ ...||+.++
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~--------------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r----~~~pfv~in 270 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY--------------ARSDATVLILGESGTGKELVAQAIHQLSGR----RDFPFVAIN 270 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCcCHHHHHHHHHHhcCc----CCCCEEEec
Confidence 34778999999999998877655 456789999999999999999999998755 345999999
Q ss_pred cccc-----cccccCCchhH--------HHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc----
Q 013316 246 RTDL-----VGEFVGHTGPK--------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---- 308 (445)
Q Consensus 246 ~~~l-----~~~~~g~~~~~--------~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---- 308 (445)
|+.+ .+.+||+.... ....|+.+.+|+||||||+.+.. ..|..|+..++++.
T Consensus 271 C~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~-----------~~Q~~Ll~~L~~~~~~r~ 339 (526)
T TIGR02329 271 CGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPL-----------PLQTRLLRVLEEREVVRV 339 (526)
T ss_pred cccCChhHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCH-----------HHHHHHHHHHhcCcEEec
Confidence 9875 34577763321 24578889999999999988876 78899999987643
Q ss_pred ---------EEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcc
Q 013316 309 ---------VVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSC 374 (445)
Q Consensus 309 ---------~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~ 374 (445)
+.+|++++.+....+. ...+.|..|+. ..|.+|++. .+|+..++++++.+..... ...+
T Consensus 340 g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~-------~~~~ 412 (526)
T TIGR02329 340 GGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAAL-------RLPD 412 (526)
T ss_pred CCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHc-------CCCC
Confidence 3677777666543321 11244555774 678999998 5899999999999865322 1236
Q ss_pred cHHHHHH-------HHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316 375 SMDAIAA-------LIEKETTEKQRREMNGGLVDPMLVNAREN 410 (445)
Q Consensus 375 ~~~~l~~-------~~~~~~~~~~~~~~n~r~l~~~~~~~~~~ 410 (445)
+++++.. +..+.| |||.|+|+++++++.-.
T Consensus 413 ~~~a~~~~~~~~~~L~~y~W------PGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 413 SEAAAQVLAGVADPLQRYPW------PGNVRELRNLVERLALE 449 (526)
T ss_pred CHHHHHHhHHHHHHHHhCCC------CchHHHHHHHHHHHHHh
Confidence 7777776 777777 99999999999998653
No 61
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.84 E-value=8e-21 Score=193.46 Aligned_cols=203 Identities=19% Similarity=0.249 Sum_probs=156.3
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.++.++|.++.++++.+.+..+ +....+|+|+||+||||+++|++||..+.+ ...+|+.++|
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~--------------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r----~~~pfv~i~c 255 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVV--------------ARSNSTVLLRGESGTGKELIAKAIHYLSPR----AKRPFVKVNC 255 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHH--------------hCcCCCEEEECCCCccHHHHHHHHHHhCCC----CCCCeEEeec
Confidence 3557999999999998877655 456789999999999999999999998765 3449999999
Q ss_pred cccc-----ccccCCchhH-------HHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-------
Q 013316 247 TDLV-----GEFVGHTGPK-------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------- 307 (445)
Q Consensus 247 ~~l~-----~~~~g~~~~~-------~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------- 307 (445)
+.+. +.+||+.... ....|+.+.+|+||||||+.+.+ ..|..|+..++.+
T Consensus 256 ~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~-----------~~Q~~Ll~~l~~~~~~~~~~ 324 (534)
T TIGR01817 256 AALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP-----------AFQAKLLRVLQEGEFERVGG 324 (534)
T ss_pred CCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCH-----------HHHHHHHHHHhcCcEEECCC
Confidence 8753 3456653221 12347788899999999999887 7788899988763
Q ss_pred ------cEEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccH
Q 013316 308 ------KVVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSM 376 (445)
Q Consensus 308 ------~~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 376 (445)
++.+|++++.+....+. ...+.|..|+. ..|.+|++. .+|+..|+++++.+...+.+ ....+++
T Consensus 325 ~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~-----~~~~~s~ 399 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENG-----RPLTITP 399 (534)
T ss_pred CceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcC-----CCCCCCH
Confidence 26788887766544322 12356667885 578999998 79999999999998654332 1257889
Q ss_pred HHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 377 DAIAALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 377 ~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
+++..+..+.| |||.|+|+++++++..
T Consensus 400 ~a~~~L~~~~W------PGNvrEL~~v~~~a~~ 426 (534)
T TIGR01817 400 SAIRVLMSCKW------PGNVRELENCLERTAT 426 (534)
T ss_pred HHHHHHHhCCC------CChHHHHHHHHHHHHH
Confidence 99999998888 9999999999999864
No 62
>PHA02791 ankyrin-like protein; Provisional
Probab=99.84 E-value=1.9e-20 Score=173.58 Aligned_cols=130 Identities=15% Similarity=0.050 Sum_probs=66.2
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCC--------
Q 013316 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY-------- 84 (445)
Q Consensus 13 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~-------- 84 (445)
+.||||+|+..|+.++++.|+. .+++++..+. .|+||||+|+..|+.+++++|+++ |++++.++..
T Consensus 61 ~~TpLh~Aa~~g~~eiV~lLL~-~Gadvn~~d~-~G~TpLh~Aa~~g~~eivk~Ll~~----gadin~~~~~g~~TpL~~ 134 (284)
T PHA02791 61 NEFPLHQAATLEDTKIVKILLF-SGMDDSQFDD-KGNTALYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYH 134 (284)
T ss_pred CCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHC----CCCcCccCCCCCcHHHHH
Confidence 3455555555555555544432 3444444443 355555555555555555555543 3444444333
Q ss_pred -------------------------CCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCh-hhhhhcCCCChHHHHHH
Q 013316 85 -------------------------GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTP-LDHLSNGPGSAKLRELL 138 (445)
Q Consensus 85 -------------------------g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tp-l~~~a~~~~~~~i~~~l 138 (445)
|.||||+|+..|+.+++++|+++|++++.+|..|.|| | |+|+..++.+++++|
T Consensus 135 Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L-~~Aa~~~~~e~v~lL 213 (284)
T PHA02791 135 AVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDI-KLAIDNKDLEMLQAL 213 (284)
T ss_pred HHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHH-HHHHHcCCHHHHHHH
Confidence 4555555555555555555555555555555555544 5 445555555555555
Q ss_pred HhhhhhHHhhh
Q 013316 139 LWHSEEQRKRR 149 (445)
Q Consensus 139 l~~~~~~~~~~ 149 (445)
+++|++....+
T Consensus 214 l~~Ga~in~~~ 224 (284)
T PHA02791 214 FKYDINIYSVN 224 (284)
T ss_pred HHCCCCCccCc
Confidence 55555544443
No 63
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.84 E-value=5.4e-21 Score=185.06 Aligned_cols=140 Identities=26% Similarity=0.300 Sum_probs=107.3
Q ss_pred ccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccccc
Q 013316 4 NQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN 82 (445)
Q Consensus 4 ~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d 82 (445)
|.+++..+ .|.|+|||||.+|+++++++|+. +++++|......+.||||||+++|++.+|.+|+++ |+|++.+|
T Consensus 68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~-~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqh----GAdpt~~D 142 (600)
T KOG0509|consen 68 GESVNNPDREGVTLLHWAAINNRLDVARYLIS-HGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQH----GADPTLKD 142 (600)
T ss_pred CcCCCCCCcCCccceeHHHHcCcHHHHHHHHH-cCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHc----CCCCceec
Confidence 55555555 68888888888888888877664 57788888755677888888888888888888885 78888888
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhh
Q 013316 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 149 (445)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~ 149 (445)
.+|.+|+|+|+..++...+.+|+.+|++++.+|.+|.||| ++|+..+....+..|+..++.....+
T Consensus 143 ~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpL-mwAaykg~~~~v~~LL~f~a~~~~~d 208 (600)
T KOG0509|consen 143 KQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPL-MWAAYKGFALFVRRLLKFGASLLLTD 208 (600)
T ss_pred CCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHH-HHHHHhcccHHHHHHHHhcccccccc
Confidence 8888888888888888888888888888888888888888 55555555555777777776655544
No 64
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.84 E-value=9.3e-21 Score=183.45 Aligned_cols=152 Identities=24% Similarity=0.307 Sum_probs=121.4
Q ss_pred CCCccCccCCC--CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccc
Q 013316 1 MQKNQDRRSRS--AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL 78 (445)
Q Consensus 1 l~~~~~~~~~~--~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v 78 (445)
+++|+++|+.. .+.|||||||++|+..++..|+ ++|++++..|. .|.+|||.|+++||..+|-++|.+ ++|+
T Consensus 98 i~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLl-qhGAdpt~~D~-~G~~~lHla~~~~~~~~vayll~~----~~d~ 171 (600)
T KOG0509|consen 98 ISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLL-QHGADPTLKDK-QGLTPLHLAAQFGHTALVAYLLSK----GADI 171 (600)
T ss_pred HHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHH-HcCCCCceecC-CCCcHHHHHHHhCchHHHHHHHHh----cccC
Confidence 46788888776 5888888888888888887655 57888888887 788888888888888888888875 6888
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccc-cCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316 79 EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-NEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET 157 (445)
Q Consensus 79 ~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~-~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~ 157 (445)
|.+|.+|+||||||+.+|+...+..|++.|+.+..+| ..|+||| |+|...++..++.++++.+++....+..+.++..
T Consensus 172 d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpL-Hwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~ 250 (600)
T KOG0509|consen 172 DLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPL-HWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFD 250 (600)
T ss_pred CCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchH-HHHHhcCCcceEehhhhcCCcccccccCCCCHHH
Confidence 8888888888888888888887888888888888877 8888888 6777777777777777777776666665555555
Q ss_pred HH
Q 013316 158 KA 159 (445)
Q Consensus 158 ~a 159 (445)
.+
T Consensus 251 LA 252 (600)
T KOG0509|consen 251 LA 252 (600)
T ss_pred HH
Confidence 44
No 65
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.84 E-value=8.7e-20 Score=188.11 Aligned_cols=190 Identities=20% Similarity=0.284 Sum_probs=136.8
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
..|++++|++.+......+.+.+ ......+++|+||||||||++|+++|+.+.. +|+.++
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i-------------~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~-------~f~~ln 84 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAI-------------KADRVGSLILYGPPGVGKTTLARIIANHTRA-------HFSSLN 84 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHH-------------hcCCCceEEEECCCCCCHHHHHHHHHHHhcC-------cceeeh
Confidence 35778999998875322221111 1335568999999999999999999998765 677777
Q ss_pred cccccccccCCchhHHHHHHHHc--------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316 246 RTDLVGEFVGHTGPKTRRRIKEA--------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 317 (445)
Q Consensus 246 ~~~l~~~~~g~~~~~~~~~~~~a--------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~ 317 (445)
++.. ....++..++.+ .+.+|||||||.+.. ..++.|+..++++.+++|++++.
T Consensus 85 a~~~-------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~-----------~qQdaLL~~lE~g~IiLI~aTTe 146 (725)
T PRK13341 85 AVLA-------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK-----------AQQDALLPWVENGTITLIGATTE 146 (725)
T ss_pred hhhh-------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH-----------HHHHHHHHHhcCceEEEEEecCC
Confidence 6531 111222322221 347999999999875 55778899999999999999888
Q ss_pred hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316 318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 397 (445)
Q Consensus 318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~ 397 (445)
++...+ ++++++|+ ..+.|++++.+++..+++.++.+....++.. ...++++++..+. ..+ +||.
T Consensus 147 np~~~l---~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~----~v~I~deaL~~La-~~s------~GD~ 211 (725)
T PRK13341 147 NPYFEV---NKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDR----KVDLEPEAEKHLV-DVA------NGDA 211 (725)
T ss_pred ChHhhh---hhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCc----ccCCCHHHHHHHH-HhC------CCCH
Confidence 766544 78999997 7899999999999999999987543222212 2356777877555 444 7889
Q ss_pred hhhHHHHHHHH
Q 013316 398 GLVDPMLVNAR 408 (445)
Q Consensus 398 r~l~~~~~~~~ 408 (445)
|.+.++++.+.
T Consensus 212 R~lln~Le~a~ 222 (725)
T PRK13341 212 RSLLNALELAV 222 (725)
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 66
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.83 E-value=5.5e-20 Score=185.59 Aligned_cols=204 Identities=20% Similarity=0.201 Sum_probs=157.6
Q ss_pred HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 013316 168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 247 (445)
Q Consensus 168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~ 247 (445)
...++|.+..++++.+.+..+ +..+.+|+|+|++||||+++|++||..+.+ ...+|+.++|+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~--------------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r----~~~p~v~v~c~ 247 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVV--------------AASDLNVLILGETGVGKELVARAIHAASPR----ADKPLVYLNCA 247 (509)
T ss_pred CCceeecCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCccHHHHHHHHHHhCCc----CCCCeEEEEcc
Confidence 456999999999999877765 567889999999999999999999998765 34499999999
Q ss_pred ccc-----ccccCCchhH-------HHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC--------
Q 013316 248 DLV-----GEFVGHTGPK-------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------- 307 (445)
Q Consensus 248 ~l~-----~~~~g~~~~~-------~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------- 307 (445)
.+. +.+||+.... ....|+.+.+|+|||||||.+.. ..|.+|+..++++
T Consensus 248 ~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~ 316 (509)
T PRK05022 248 ALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPL-----------ALQAKLLRVLQYGEIQRVGSD 316 (509)
T ss_pred cCChHHHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCH-----------HHHHHHHHHHhcCCEeeCCCC
Confidence 763 4467753221 12357889999999999998886 7888999988764
Q ss_pred -----cEEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccHH
Q 013316 308 -----KVVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD 377 (445)
Q Consensus 308 -----~~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 377 (445)
++.+|++++.+....+. ...+.|..|+. ..|.+|++. .+|+..++++++.+...+++. -...++++
T Consensus 317 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~----~~~~~s~~ 392 (509)
T PRK05022 317 RSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGL----RSLRLSPA 392 (509)
T ss_pred cceecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCC----CCCCCCHH
Confidence 35778877766544321 12355666775 568899988 589999999999987654432 13478899
Q ss_pred HHHHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316 378 AIAALIEKETTEKQRREMNGGLVDPMLVNAREN 410 (445)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~ 410 (445)
++..+..+.| |||.|+|+++++++.-.
T Consensus 393 a~~~L~~y~W------PGNvrEL~~~i~ra~~~ 419 (509)
T PRK05022 393 AQAALLAYDW------PGNVRELEHVISRAALL 419 (509)
T ss_pred HHHHHHhCCC------CCcHHHHHHHHHHHHHh
Confidence 9999999888 99999999999998653
No 67
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.1e-19 Score=184.26 Aligned_cols=221 Identities=21% Similarity=0.363 Sum_probs=169.0
Q ss_pred HHHHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC
Q 013316 161 MDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 239 (445)
Q Consensus 161 ~~~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~ 239 (445)
+..++..+.+ ++||+++...+.+.++ +...|+....+|...+||.||+|+|||.+|+++|..+.-.. .
T Consensus 482 ll~le~~L~~rViGQd~AV~avs~aIr-------raRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e----~ 550 (786)
T COG0542 482 LLNLERRLKKRVIGQDEAVEAVSDAIR-------RARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE----Q 550 (786)
T ss_pred HHHHHHHHhcceeChHHHHHHHHHHHH-------HHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC----c
Confidence 3345555554 9999999888887554 55677877777778999999999999999999999987421 2
Q ss_pred CeEEeeccc---------cccc---ccCC-chhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC
Q 013316 240 RVTEVQRTD---------LVGE---FVGH-TGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG 306 (445)
Q Consensus 240 ~~~~~~~~~---------l~~~---~~g~-~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~ 306 (445)
.++.++.|. |++. |+|+ .+..++..++..+++||+||||++.+| ++++.||+.||+
T Consensus 551 aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHp-----------dV~nilLQVlDd 619 (786)
T COG0542 551 ALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHP-----------DVFNLLLQVLDD 619 (786)
T ss_pred cceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCH-----------HHHHHHHHHhcC
Confidence 677777776 4443 6676 456778888888999999999999999 999999999997
Q ss_pred Cc-------------EEEEEecCchhHHHHH------------------------hhCcccccccccceeCCCCCHHHHH
Q 013316 307 GK-------------VVVIFAGYSEPMKRVI------------------------ASNEGFCRRVTKFFHFNDFNSEELA 349 (445)
Q Consensus 307 ~~-------------~~~i~a~~~~~~~~~~------------------------~~~~~l~~R~~~~i~~~~~~~~~~~ 349 (445)
|+ .++|+++|-- ...+. .-.|+|+.|+|.+|.|.+++.+++.
T Consensus 620 GrLTD~~Gr~VdFrNtiIImTSN~G-s~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~ 698 (786)
T COG0542 620 GRLTDGQGRTVDFRNTIIIMTSNAG-SEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLE 698 (786)
T ss_pred CeeecCCCCEEecceeEEEEecccc-hHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHH
Confidence 53 3666665422 11100 0028899999999999999999999
Q ss_pred HHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316 350 KILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 410 (445)
Q Consensus 350 ~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~ 410 (445)
+|++..+.+...++...++.+ .+++++..++....+. ...| +|-+++++++-+..
T Consensus 699 ~Iv~~~L~~l~~~L~~~~i~l--~~s~~a~~~l~~~gyd---~~~G-ARpL~R~Iq~~i~~ 753 (786)
T COG0542 699 RIVDLQLNRLAKRLAERGITL--ELSDEAKDFLAEKGYD---PEYG-ARPLRRAIQQEIED 753 (786)
T ss_pred HHHHHHHHHHHHHHHhCCceE--EECHHHHHHHHHhccC---CCcC-chHHHHHHHHHHHH
Confidence 999999999988887555554 7888898888877764 2233 88888888876553
No 68
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.83 E-value=8.2e-21 Score=191.35 Aligned_cols=265 Identities=18% Similarity=0.196 Sum_probs=181.7
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHHhHHHHH
Q 013316 86 ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELE 165 (445)
Q Consensus 86 ~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~ 165 (445)
.+|+.+.+..+..+.+...++.|++ +++.++....++...+............. . .....
T Consensus 75 ~~pvIvlt~~~~~~~~~~a~~~Ga~------------~~l~KP~~~~~L~~~i~~~l~~~~~~~~~-------~-~~~~~ 134 (469)
T PRK10923 75 MLPVIIMTAHSDLDAAVSAYQQGAF------------DYLPKPFDIDEAVALVERAISHYQEQQQP-------R-NIQVN 134 (469)
T ss_pred CCeEEEEECCCCHHHHHHHHhcCcc------------eEEecCCcHHHHHHHHHHHHHHHHHHHhh-------h-hhhhc
Confidence 3454444555666777777788887 56677666666655553222111100000 0 00111
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
..+.+++|.+.....+.+.+..+ .....++++.|++|||||++|+++|..+.+ ...+|+.++
T Consensus 135 ~~~~~lig~s~~~~~l~~~~~~~--------------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~----~~~~~i~i~ 196 (469)
T PRK10923 135 GPTTDIIGEAPAMQDVFRIIGRL--------------SRSSISVLINGESGTGKELVAHALHRHSPR----AKAPFIALN 196 (469)
T ss_pred cccccceecCHHHHHHHHHHHHH--------------hccCCeEEEEeCCCCcHHHHHHHHHhcCCC----CCCCeEeee
Confidence 23456899998888887765543 345678999999999999999999997654 345999999
Q ss_pred ccccc-----ccccCCchhH-------HHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc-----
Q 013316 246 RTDLV-----GEFVGHTGPK-------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK----- 308 (445)
Q Consensus 246 ~~~l~-----~~~~g~~~~~-------~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~----- 308 (445)
|+.+. +.++|+.... ....|+.+.+|+||||||+.+.. ..|..|++.++.+.
T Consensus 197 c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~-----------~~q~~L~~~l~~~~~~~~~ 265 (469)
T PRK10923 197 MAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL-----------DVQTRLLRVLADGQFYRVG 265 (469)
T ss_pred CCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH-----------HHHHHHHHHHhcCcEEeCC
Confidence 98753 3456653221 12357778899999999999887 77889999887643
Q ss_pred --------EEEEEecCchhHHHHH--hhCccccccc-ccceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCccc
Q 013316 309 --------VVVIFAGYSEPMKRVI--ASNEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCS 375 (445)
Q Consensus 309 --------~~~i~a~~~~~~~~~~--~~~~~l~~R~-~~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~ 375 (445)
+.+|++++.+....+. ...+.|..|| ...|.+|++. .+|+..++++++++.....+. . ...++
T Consensus 266 ~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~---~-~~~~~ 341 (469)
T PRK10923 266 GYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGV---E-AKLLH 341 (469)
T ss_pred CCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCC---C-CCCcC
Confidence 3677777665443221 1135667787 4778888887 689999999999886544321 1 23578
Q ss_pred HHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 376 MDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 376 ~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
++++..+..+.| |||.|+|+++++++..
T Consensus 342 ~~a~~~L~~~~w------pgNv~eL~~~i~~~~~ 369 (469)
T PRK10923 342 PETEAALTRLAW------PGNVRQLENTCRWLTV 369 (469)
T ss_pred HHHHHHHHhCCC------CChHHHHHHHHHHHHH
Confidence 899999999988 9999999999999865
No 69
>PHA02791 ankyrin-like protein; Provisional
Probab=99.83 E-value=3.2e-20 Score=172.06 Aligned_cols=126 Identities=18% Similarity=0.132 Sum_probs=113.6
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 013316 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (445)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpL 89 (445)
...|.||||+||..|+.++++.|+. .+++++..+ |+||||+|+..|+.+++++|+.+ |++++.+|..|.|||
T Consensus 27 D~~G~TpLh~Aa~~g~~eiv~~Ll~-~ga~~n~~d---~~TpLh~Aa~~g~~eiV~lLL~~----Gadvn~~d~~G~TpL 98 (284)
T PHA02791 27 DVHGHSALYYAIADNNVRLVCTLLN-AGALKNLLE---NEFPLHQAATLEDTKIVKILLFS----GMDDSQFDDKGNTAL 98 (284)
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHH-CcCCCcCCC---CCCHHHHHHHCCCHHHHHHHHHC----CCCCCCCCCCCCCHH
Confidence 4479999999999999999998775 577777654 68999999999999999999985 889999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCcccccCCC-ChhhhhhcCCCChHHHHHHHhhhhh
Q 013316 90 HMAAKNGCNEAAKLLLAHGAFIEAKANEGK-TPLDHLSNGPGSAKLRELLLWHSEE 144 (445)
Q Consensus 90 h~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~-tpl~~~a~~~~~~~i~~~ll~~~~~ 144 (445)
|+|+..|+.+++++|+++|++++.++..|+ ||| |+|+..++.+++++|++++..
T Consensus 99 h~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL-~~Aa~~g~~eivk~LL~~~~~ 153 (284)
T PHA02791 99 YYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSF-YHAVMLNDVSIVSYFLSEIPS 153 (284)
T ss_pred HHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHH-HHHHHcCCHHHHHHHHhcCCc
Confidence 999999999999999999999999998885 899 888888999999999987643
No 70
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.83 E-value=1.7e-19 Score=186.80 Aligned_cols=243 Identities=16% Similarity=0.204 Sum_probs=166.0
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcC---CCCCCCeEE
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTE 243 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~---~~~~~~~~~ 243 (445)
.++.++|.++..+++.+.+. .....++||+||||||||++|+.+|+.+.... .+....++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~----------------r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~ 247 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLC----------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHh----------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe
Confidence 35569999988777776432 23467889999999999999999998764322 223445666
Q ss_pred eeccccc--ccccCCchhHHHHHHHH---ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCch
Q 013316 244 VQRTDLV--GEFVGHTGPKTRRRIKE---AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE 318 (445)
Q Consensus 244 ~~~~~l~--~~~~g~~~~~~~~~~~~---a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~ 318 (445)
++.+.+. ..|.|+.+..++++|.. ..++||||||||.+.+.+...++ ..++.+.|...+..+++.+|++||..
T Consensus 248 l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g--~~d~~nlLkp~L~~g~i~vIgATt~~ 325 (758)
T PRK11034 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG--QVDAANLIKPLLSSGKIRVIGSTTYQ 325 (758)
T ss_pred ccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc--HHHHHHHHHHHHhCCCeEEEecCChH
Confidence 6655554 35778888888887764 45689999999999876643222 23456667778889999999999999
Q ss_pred hHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCch
Q 013316 319 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG 398 (445)
Q Consensus 319 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r 398 (445)
++..++..||+|.+|| ..|.++.|+.+++.+|++....++... ....++++++.... ..+.-++....-..
T Consensus 326 E~~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~~-------h~v~i~~~al~~a~-~ls~ryi~~r~lPd 396 (758)
T PRK11034 326 EFSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEAH-------HDVRYTAKAVRAAV-ELAVKYINDRHLPD 396 (758)
T ss_pred HHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhhc-------cCCCcCHHHHHHHH-HHhhccccCccChH
Confidence 9888888899999999 689999999999999999877665432 12345566665433 22211111111122
Q ss_pred hhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316 399 LVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 441 (445)
Q Consensus 399 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 441 (445)
.+..+++.|....... ........|+.+||.+.+..+.
T Consensus 397 Kaidlldea~a~~~~~-----~~~~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 397 KAIDVIDEAGARARLM-----PVSKRKKTVNVADIESVVARIA 434 (758)
T ss_pred HHHHHHHHHHHhhccC-----cccccccccChhhHHHHHHHHh
Confidence 5566777664432211 0011223688999998887654
No 71
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.83 E-value=4.5e-20 Score=164.83 Aligned_cols=141 Identities=17% Similarity=0.141 Sum_probs=79.7
Q ss_pred CCchHhHHHHHcC--CHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhC---CcHHHHHHhhcCCCCCCcccccccCCCC
Q 013316 12 AKPATIHGCAQSG--DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (445)
Q Consensus 12 ~~~t~L~~A~~~g--~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~g~~v~~~d~~g~ 86 (445)
.|.||||+|+..+ +.++++.|+. .|+++|..+...|+||||+|+.. ++.+++++|+++ |+++|.+|..|.
T Consensus 50 ~g~TpLh~a~~~~~~~~eiv~~Ll~-~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~----gadin~~d~~G~ 124 (209)
T PHA02859 50 LYETPIFSCLEKDKVNVEILKFLIE-NGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDS----GSSITEEDEDGK 124 (209)
T ss_pred cCCCHHHHHHHcCCCCHHHHHHHHH-CCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHC----CCCCCCcCCCCC
Confidence 4566666666533 5566655443 45666655422466666665542 245666666653 566666666666
Q ss_pred cHHHHHHH--cCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316 87 TPLHMAAK--NGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET 157 (445)
Q Consensus 87 tpLh~A~~--~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~ 157 (445)
||||+|+. .++.+++++|++.|++++.+|..|.||||.++...++.+++++|+++|+++..++..+.++..
T Consensus 125 TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~ 197 (209)
T PHA02859 125 NLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYD 197 (209)
T ss_pred CHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 66666554 245666666666666666666666666633344445566666666666655555544444443
No 72
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.83 E-value=2e-19 Score=189.70 Aligned_cols=239 Identities=18% Similarity=0.246 Sum_probs=163.4
Q ss_pred HHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCe
Q 013316 163 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV 241 (445)
Q Consensus 163 ~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~ 241 (445)
.....|++ ++|++.+++++.+++...... +.....+++|+||||||||++|++||..++. +|
T Consensus 313 ~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~----------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~-------~~ 375 (775)
T TIGR00763 313 RAKEILDEDHYGLKKVKERILEYLAVQKLR----------GKMKGPILCLVGPPGVGKTSLGKSIAKALNR-------KF 375 (775)
T ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhh----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcC-------Ce
Confidence 34455554 899999999999865432211 1123347999999999999999999999976 77
Q ss_pred EEeeccccc---------ccccCCchhHHHHHHHHc--cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----
Q 013316 242 TEVQRTDLV---------GEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---- 306 (445)
Q Consensus 242 ~~~~~~~l~---------~~~~g~~~~~~~~~~~~a--~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~---- 306 (445)
+.++++.+. ..|+|.....+.+.|..+ ...||||||||++.+..+++ ..+.|++.++.
T Consensus 376 ~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~ 448 (775)
T TIGR00763 376 VRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNN 448 (775)
T ss_pred EEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCC-------HHHHHHHhcCHHhcC
Confidence 777655421 246777777777778765 34799999999999754321 22345554442
Q ss_pred -------------CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccc-cCC
Q 013316 307 -------------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK-LHS 372 (445)
Q Consensus 307 -------------~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~-~~~ 372 (445)
+++++|+++|... ..+|+|++|| ..|.|+.|+.+++.+|++.++...... ..++. ...
T Consensus 449 ~f~d~~~~~~~d~s~v~~I~TtN~~~-----~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~--~~~l~~~~~ 520 (775)
T TIGR00763 449 AFSDHYLDVPFDLSKVIFIATANSID-----TIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALE--DHGLKPDEL 520 (775)
T ss_pred ccccccCCceeccCCEEEEEecCCch-----hCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHH--HcCCCcceE
Confidence 4577777765532 2389999999 589999999999999999887432111 01111 123
Q ss_pred cccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhcc-CCCCh--hhhhhccHHHHHHHHH
Q 013316 373 SCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSF-DCLDT--DELRTITLEDLEAGLK 438 (445)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~-~~~~~--~~~~~i~~~d~~~a~~ 438 (445)
.++++++.+++..++ +..| +|.|+..+++.++..+..+.. ..... .-...|+.+++++.+.
T Consensus 521 ~~~~~~l~~i~~~~~----~e~g-~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 521 KITDEALLLLIKYYT----REAG-VRNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred EECHHHHHHHHHhcC----hhcC-ChHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 578889998887554 3344 899999999999888766542 21111 1236899998887764
No 73
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.83 E-value=3e-20 Score=187.48 Aligned_cols=206 Identities=16% Similarity=0.199 Sum_probs=156.7
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
..|++++|.++.++++.+.++.+ +....+|+|+|++||||+++|+++|..+.+ ...+|+.++
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~--------------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r----~~~pfv~in 262 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKL--------------AMLDAPLLITGDTGTGKDLLAYACHLRSPR----GKKPFLALN 262 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCccHHHHHHHHHHhCCC----CCCCeEEec
Confidence 46778999999888888766554 346778999999999999999999987654 334999999
Q ss_pred ccccc-----ccccCCchh-------HHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC------
Q 013316 246 RTDLV-----GEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------ 307 (445)
Q Consensus 246 ~~~l~-----~~~~g~~~~-------~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------ 307 (445)
|+.+. +.+||+... .....|+.|.+|+||||||+.+.+ ..|..|+.+++++
T Consensus 263 ca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~-----------~~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 263 CASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSP-----------RMQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred cccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCH-----------HHHHHHHHHHhcCCcccCC
Confidence 99853 346775321 123468889999999999988877 7788898888763
Q ss_pred -------cEEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCccc
Q 013316 308 -------KVVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCS 375 (445)
Q Consensus 308 -------~~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~ 375 (445)
++.+|++|+.+....+. ...+.|..|+. ..|.+|++. .+|+..++++++++...+.+. -.+.++
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~----~~~~ls 407 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGV----PRPKLA 407 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCC----CCCCcC
Confidence 35677777665543321 12355777874 678888887 578999999999887544331 134688
Q ss_pred HHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316 376 MDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 410 (445)
Q Consensus 376 ~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~ 410 (445)
++++..+..+.| |||.|+|+++++++...
T Consensus 408 ~~a~~~L~~y~W------PGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 408 ADLNTVLTRYGW------PGNVRQLKNAIYRALTQ 436 (520)
T ss_pred HHHHHHHhcCCC------CCHHHHHHHHHHHHHHh
Confidence 899998888888 99999999999999764
No 74
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.2e-19 Score=162.44 Aligned_cols=192 Identities=18% Similarity=0.283 Sum_probs=142.1
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcC--CCCCCC
Q 013316 163 ELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG--ILPTDR 240 (445)
Q Consensus 163 ~~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~--~~~~~~ 240 (445)
+....|+.++=-..+|+++..++.....-. ++.....+ .....-+|++||||||||++++++|+.+.-.. .-..+.
T Consensus 136 eF~glWEsLiyds~lK~~ll~Ya~s~l~fs-ek~vntnl-It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~ 213 (423)
T KOG0744|consen 136 EFDGLWESLIYDSNLKERLLSYAASALLFS-EKKVNTNL-ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQ 213 (423)
T ss_pred hhhhhHHHHhhcccHHHHHHHHHHHHHHHH-hcCCCCce-eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccce
Confidence 456678888888899999988665433222 22222111 12234688999999999999999999885322 234557
Q ss_pred eEEeecccccccccCCchhHHHHHHHHc------cC--cEEEEcCccccccCCC----CCCchhHHHHHHHHHhhccC--
Q 013316 241 VTEVQRTDLVGEFVGHTGPKTRRRIKEA------EG--GILFVDEAYRLIPMQK----ADDKDYGIEALEEIMSVMDG-- 306 (445)
Q Consensus 241 ~~~~~~~~l~~~~~g~~~~~~~~~~~~a------~~--~il~lDEid~l~~~~~----~~~~~~~~~~~~~ll~~~~~-- 306 (445)
++++++..+.++||+++++.+.++|++- ++ -.++|||+++|+..|. ..++....++++.+|.+||+
T Consensus 214 liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK 293 (423)
T KOG0744|consen 214 LIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK 293 (423)
T ss_pred EEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988664 33 4567999999987662 22345566899999999996
Q ss_pred -CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhccc
Q 013316 307 -GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQT 360 (445)
Q Consensus 307 -~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~ 360 (445)
..-++|++|++- +..+ |-++-+|-|-+.++.+|+...+.+|++..+.++.
T Consensus 294 ~~~NvliL~TSNl-~~si---D~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~ 344 (423)
T KOG0744|consen 294 RYPNVLILATSNL-TDSI---DVAFVDRADIVFYVGPPTAEAIYEILKSCIEELI 344 (423)
T ss_pred cCCCEEEEeccch-HHHH---HHHhhhHhhheeecCCccHHHHHHHHHHHHHHHH
Confidence 233555554432 2332 8899999999999999999999999999888763
No 75
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.83 E-value=1.8e-19 Score=186.58 Aligned_cols=219 Identities=18% Similarity=0.252 Sum_probs=158.0
Q ss_pred HHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCe
Q 013316 163 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV 241 (445)
Q Consensus 163 ~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~ 241 (445)
.++..+.. ++||+.+++.|.+.+... ..++....++..++||+||||||||++|+.+|+.++. +|
T Consensus 451 ~l~~~L~~~ViGQ~~ai~~l~~~i~~~-------~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-------~~ 516 (758)
T PRK11034 451 NLGDRLKMLVFGQDKAIEALTEAIKMS-------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-------EL 516 (758)
T ss_pred HHHHHhcceEeCcHHHHHHHHHHHHHH-------hccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-------Cc
Confidence 34445543 899999999998866533 2233333344567999999999999999999999865 78
Q ss_pred EEeeccccc-----ccccC-------Cc-hhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-
Q 013316 242 TEVQRTDLV-----GEFVG-------HT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG- 307 (445)
Q Consensus 242 ~~~~~~~l~-----~~~~g-------~~-~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~- 307 (445)
+.++++.+. +.++| +. ...+.+.+....++||||||||++++ ++++.|++.|+++
T Consensus 517 i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~-----------~v~~~LLq~ld~G~ 585 (758)
T PRK11034 517 LRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-----------DVFNLLLQVMDNGT 585 (758)
T ss_pred EEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH-----------HHHHHHHHHHhcCe
Confidence 888877643 23333 22 23455666667889999999999987 8899999999864
Q ss_pred ------------cEEEEEecCchhHH-------------------HH-HhhCcccccccccceeCCCCCHHHHHHHHHHH
Q 013316 308 ------------KVVVIFAGYSEPMK-------------------RV-IASNEGFCRRVTKFFHFNDFNSEELAKILHIK 355 (445)
Q Consensus 308 ------------~~~~i~a~~~~~~~-------------------~~-~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 355 (445)
+.++|++++...-. .+ ....|+|..|+|.+|.|++++.+++.+|+..+
T Consensus 586 ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~ 665 (758)
T PRK11034 586 LTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKF 665 (758)
T ss_pred eecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHH
Confidence 24577776622100 00 11248999999999999999999999999999
Q ss_pred HhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhh
Q 013316 356 MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD 412 (445)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~ 412 (445)
+.+...++...++.+ .++++++.++....+ .+..| +|-++.++++-+....
T Consensus 666 l~~~~~~l~~~~i~l--~~~~~~~~~l~~~~~---~~~~G-AR~l~r~i~~~l~~~l 716 (758)
T PRK11034 666 IVELQAQLDQKGVSL--EVSQEARDWLAEKGY---DRAMG-ARPMARVIQDNLKKPL 716 (758)
T ss_pred HHHHHHHHHHCCCCc--eECHHHHHHHHHhCC---CCCCC-CchHHHHHHHHHHHHH
Confidence 998877776665554 778888887775544 23334 8888998887765433
No 76
>PHA02741 hypothetical protein; Provisional
Probab=99.82 E-value=1e-19 Score=157.19 Aligned_cols=128 Identities=24% Similarity=0.322 Sum_probs=114.3
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHh-----hCCCCcCCCCCCCCChHHHHHHhCCc----HHHHHHhhcCCCCCCcccccc
Q 013316 11 SAKPATIHGCAQSGDLLAFQRLLR-----ENPSLLNERNPVMAQTPLHVSAGYNK----AEIVKSLLEWPGNDKVELEAQ 81 (445)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~-----~~~~~~~~~~~~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~g~~v~~~ 81 (445)
..|.||||+||..|+.++++.++. ..+.+++.++. .|+||||+|+..|+ .+++++|+.+ |+++|.+
T Consensus 19 ~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~-~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~----gadin~~ 93 (169)
T PHA02741 19 SEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDD-AGQMCIHIAAEKHEAQLAAEIIDHLIEL----GADINAQ 93 (169)
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCC-CCCcHHHHHHHcCChHHHHHHHHHHHHc----CCCCCCC
Confidence 468999999999999999998754 23578888887 79999999999998 5889999985 8899998
Q ss_pred cC-CCCcHHHHHHHcCCHHHHHHHHh-cCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316 82 NM-YGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144 (445)
Q Consensus 82 d~-~g~tpLh~A~~~g~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~ 144 (445)
+. .|+||||+|+..++.+++++|+. .|++++.+|..|+||| +.|...++.+++++|++.++.
T Consensus 94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL-~~A~~~~~~~iv~~L~~~~~~ 157 (169)
T PHA02741 94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPF-ELAIDNEDVAMMQILREIVAT 157 (169)
T ss_pred CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHH-HHHHHCCCHHHHHHHHHHHHH
Confidence 85 89999999999999999999997 6999999999999999 788888999999999877654
No 77
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.82 E-value=2.9e-19 Score=188.65 Aligned_cols=215 Identities=18% Similarity=0.149 Sum_probs=152.8
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHc---CCCCCCCeEE
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTE 243 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~---~~~~~~~~~~ 243 (445)
.++.++|+++..+++.+... .....+++|+||||||||++|+.+|+.+... ..+....++.
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~----------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILL----------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred CCCcccCCHHHHHHHHHHHh----------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 45679999987665554321 3455689999999999999999999988542 2234456788
Q ss_pred eecccccc--cccCCchhHHHHHHHHcc----CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316 244 VQRTDLVG--EFVGHTGPKTRRRIKEAE----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 317 (445)
Q Consensus 244 ~~~~~l~~--~~~g~~~~~~~~~~~~a~----~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~ 317 (445)
++.+.+.. .+.|+.+..++++|+++. +.||||||||.+.+.+++.+. .++-+.|+..+++|.+.+|+|||.
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~---~d~~n~Lkp~l~~G~l~~IgaTT~ 325 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ---GDAANLLKPALARGELRTIAATTW 325 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc---ccHHHHhhHHhhCCCeEEEEecCH
Confidence 88877763 578888899999998663 479999999999986543221 134466888899999999999999
Q ss_pred hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316 318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 397 (445)
Q Consensus 318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~ 397 (445)
..+...+..||+|+||| ..|.|++|+.++..+|++......... ....++++++.... ..+..+...-.-.
T Consensus 326 ~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~-------~~v~i~d~al~~~~-~ls~ryi~~r~LP 396 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKH-------HGVLILDEAVVAAV-ELSHRYIPGRQLP 396 (852)
T ss_pred HHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhc-------CCCeeCHHHHHHHH-HHcccccccccCc
Confidence 99988888999999999 789999999999999987665543211 12345666766443 3332222222222
Q ss_pred hhhHHHHHHHHH
Q 013316 398 GLVDPMLVNARE 409 (445)
Q Consensus 398 r~l~~~~~~~~~ 409 (445)
.....+++.|+.
T Consensus 397 DKAIdlldea~a 408 (852)
T TIGR03345 397 DKAVSLLDTACA 408 (852)
T ss_pred cHHHHHHHHHHH
Confidence 233455555543
No 78
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.82 E-value=3.5e-19 Score=169.32 Aligned_cols=206 Identities=19% Similarity=0.269 Sum_probs=135.5
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|+++++++|..++..... ....+.+++|+||||||||++|+++++.++. .+.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~-----------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~-------~~~~~~~ 63 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM-----------RQEALDHLLLYGPPGLGKTTLAHIIANEMGV-------NLKITSG 63 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh-----------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------CEEEecc
Confidence 478899999999999887654321 1345678999999999999999999998864 4444433
Q ss_pred ccccccccCCchhHHHHHHHH-ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC------------------
Q 013316 247 TDLVGEFVGHTGPKTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------------------ 307 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~-a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------------------ 307 (445)
+... ....+...+.. ..+.+|||||||.+.+ ..++.|...|++.
T Consensus 64 ~~~~------~~~~l~~~l~~~~~~~vl~iDEi~~l~~-----------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~ 126 (305)
T TIGR00635 64 PALE------KPGDLAAILTNLEEGDVLFIDEIHRLSP-----------AVEELLYPAMEDFRLDIVIGKGPSARSVRLD 126 (305)
T ss_pred chhc------CchhHHHHHHhcccCCEEEEehHhhhCH-----------HHHHHhhHHHhhhheeeeeccCccccceeec
Confidence 2221 11223333333 2568999999999976 3334455554432
Q ss_pred --cEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHH
Q 013316 308 --KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 385 (445)
Q Consensus 308 --~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 385 (445)
.+++|++|+.... .++++++||...+.|++|+.+++.++++..+... ...++++++..+. .
T Consensus 127 ~~~~~li~~t~~~~~-----l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~-----------~~~~~~~al~~ia-~ 189 (305)
T TIGR00635 127 LPPFTLVGATTRAGM-----LTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLL-----------NVEIEPEAALEIA-R 189 (305)
T ss_pred CCCeEEEEecCCccc-----cCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHh-----------CCCcCHHHHHHHH-H
Confidence 2566666655432 2678999998889999999999999999877643 2356677776555 4
Q ss_pred HHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316 386 ETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 439 (445)
Q Consensus 386 ~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 439 (445)
.+ .|+.|.+.++++.+....... +...|+.+++.+++..
T Consensus 190 ~~------~G~pR~~~~ll~~~~~~a~~~---------~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 190 RS------RGTPRIANRLLRRVRDFAQVR---------GQKIINRDIALKALEM 228 (305)
T ss_pred Hh------CCCcchHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHH
Confidence 45 455667767777653221110 1124677777766654
No 79
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.82 E-value=7.5e-19 Score=168.17 Aligned_cols=206 Identities=19% Similarity=0.250 Sum_probs=138.2
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|++..++.+..++..... ...++.+++|+||||||||++|+++|+.++. .+...+.
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~-----------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~-------~~~~~~~ 84 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKK-----------RGEALDHVLLYGPPGLGKTTLANIIANEMGV-------NIRITSG 84 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHh-----------cCCCCCcEEEECCCCccHHHHHHHHHHHhCC-------CeEEEec
Confidence 578899999999998876654321 1345679999999999999999999999875 4444443
Q ss_pred ccccccccCCchhHHHHHHHHc-cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-------------------
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------------------- 306 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------------------- 306 (445)
+.+. ....+..++... .++||||||||.+.+ ...+.|...|++
T Consensus 85 ~~~~------~~~~l~~~l~~l~~~~vl~IDEi~~l~~-----------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~ 147 (328)
T PRK00080 85 PALE------KPGDLAAILTNLEEGDVLFIDEIHRLSP-----------VVEEILYPAMEDFRLDIMIGKGPAARSIRLD 147 (328)
T ss_pred cccc------ChHHHHHHHHhcccCCEEEEecHhhcch-----------HHHHHHHHHHHhcceeeeeccCccccceeec
Confidence 3221 223344445443 568999999999975 223334444432
Q ss_pred -CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHH
Q 013316 307 -GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 385 (445)
Q Consensus 307 -~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 385 (445)
..+++|++|+.... ..++|++||...+.|++|+.+++.+|++..+... ...++++++..+. .
T Consensus 148 l~~~~li~at~~~~~-----l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~-----------~~~~~~~~~~~ia-~ 210 (328)
T PRK00080 148 LPPFTLIGATTRAGL-----LTSPLRDRFGIVQRLEFYTVEELEKIVKRSARIL-----------GVEIDEEGALEIA-R 210 (328)
T ss_pred CCCceEEeecCCccc-----CCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc-----------CCCcCHHHHHHHH-H
Confidence 22567777765432 2678999998899999999999999999887764 2346667766554 4
Q ss_pred HHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316 386 ETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 439 (445)
Q Consensus 386 ~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 439 (445)
.+ .|+.|.+.++++++....... +...|+.+++..++..
T Consensus 211 ~~------~G~pR~a~~~l~~~~~~a~~~---------~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 211 RS------RGTPRIANRLLRRVRDFAQVK---------GDGVITKEIADKALDM 249 (328)
T ss_pred Hc------CCCchHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHH
Confidence 44 466777888887763322111 1124666666666654
No 80
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.82 E-value=4.7e-20 Score=158.59 Aligned_cols=141 Identities=18% Similarity=0.237 Sum_probs=119.4
Q ss_pred ccCccCCC-CCchHhHHHHHcCCHHHHHHH---HhhCCCCcCCCCCCCCChHHHHHHhCCcHHH---HHHhhcCCCCCCc
Q 013316 4 NQDRRSRS-AKPATIHGCAQSGDLLAFQRL---LRENPSLLNERNPVMAQTPLHVSAGYNKAEI---VKSLLEWPGNDKV 76 (445)
Q Consensus 4 ~~~~~~~~-~~~t~L~~A~~~g~~~~v~~l---l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~i---v~~Ll~~~~~~g~ 76 (445)
|++++... .+.++||+||..|+.+.+..+ +...+..++..+. .|+||||+|+.+|+.++ +++|+++ |+
T Consensus 10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~-~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~----Ga 84 (166)
T PHA02743 10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDH-HGRQCTHMVAWYDRANAVMKIELLVNM----GA 84 (166)
T ss_pred chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCC-CCCcHHHHHHHhCccCHHHHHHHHHHc----CC
Confidence 44555444 578899999999999655543 4456788888887 79999999999988654 7899985 88
Q ss_pred cccccc-CCCCcHHHHHHHcCCHHHHHHHHh-cCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhh
Q 013316 77 ELEAQN-MYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRA 150 (445)
Q Consensus 77 ~v~~~d-~~g~tpLh~A~~~g~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~ 150 (445)
++|.++ ..|.||||+|+..++.+++++|+. .|++++.+|..|+||| |+|...++.+++++|+.++++.+.++.
T Consensus 85 din~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL-~~A~~~~~~~iv~~Ll~~ga~~~~~~~ 159 (166)
T PHA02743 85 DINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAY-HIAYKMRDRRMMEILRANGAVCDDPLS 159 (166)
T ss_pred CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCCccc
Confidence 999998 589999999999999999999995 8999999999999999 888888899999999999988766553
No 81
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.81 E-value=1e-19 Score=183.81 Aligned_cols=149 Identities=26% Similarity=0.272 Sum_probs=131.8
Q ss_pred CCccCccCCC-C-CchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccc
Q 013316 2 QKNQDRRSRS-A-KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79 (445)
Q Consensus 2 ~~~~~~~~~~-~-~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~ 79 (445)
+.|++++..+ . |.||||+||..|+.++++.|+. .|++++..+. .|+||||+|+..++.+++++|++. |++++
T Consensus 155 ~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~-~gad~n~~d~-~g~tpLh~A~~~~~~~iv~~Ll~~----ga~in 228 (477)
T PHA02878 155 SYGADINMKDRHKGNTALHYATENKDQRLTELLLS-YGANVNIPDK-TNNSPLHHAVKHYNKPIVHILLEN----GASTD 228 (477)
T ss_pred HcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHH-CCCCCCCcCC-CCCCHHHHHHHhCCHHHHHHHHHc----CCCCC
Confidence 5788888766 4 9999999999999999998775 6899999987 799999999999999999999995 89999
Q ss_pred cccCCCCcHHHHHHHc-CCHHHHHHHHhcCCCCccccc-CCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316 80 AQNMYGETPLHMAAKN-GCNEAAKLLLAHGAFIEAKAN-EGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET 157 (445)
Q Consensus 80 ~~d~~g~tpLh~A~~~-g~~~~~~~Ll~~ga~~~~~~~-~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~ 157 (445)
.+|..|.||||+|+.. ++.+++++|+++|++++.++. .|.||| |.| .+..+++++|+.+|++++..+..+.++..
T Consensus 229 ~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpL-h~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~ 305 (477)
T PHA02878 229 ARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTAL-HSS--IKSERKLKLLLEYGADINSLNSYKLTPLS 305 (477)
T ss_pred CCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHH-HHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence 9999999999999975 789999999999999999886 899999 666 45689999999999998888777766655
Q ss_pred HH
Q 013316 158 KA 159 (445)
Q Consensus 158 ~a 159 (445)
.+
T Consensus 306 ~A 307 (477)
T PHA02878 306 SA 307 (477)
T ss_pred HH
Confidence 44
No 82
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.81 E-value=1.9e-19 Score=163.36 Aligned_cols=210 Identities=16% Similarity=0.201 Sum_probs=159.4
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
...|+.+++.+..++.+.+..+.+ +.-..++||.|++||||.++||+.|..+.+. ..||..+
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~k~--------------AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~----~~pFlal 261 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQKL--------------AMLDAPLLITGETGTGKDLLAKACHLASPRH----SKPFLAL 261 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHHHh--------------hccCCCeEEecCCCchHHHHHHHHhhcCccc----CCCeeEe
Confidence 346788999998888877755544 3345689999999999999999999988773 4499999
Q ss_pred ecccc-----cccccCCch--hHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc---------
Q 013316 245 QRTDL-----VGEFVGHTG--PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--------- 308 (445)
Q Consensus 245 ~~~~l-----~~~~~g~~~--~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~--------- 308 (445)
+|+.+ .+++||+.+ ......|+.|.+|.+|||||-.+++ +.|.+|++++++|.
T Consensus 262 NCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp-----------~lQaKLLRFL~DGtFRRVGee~E 330 (511)
T COG3283 262 NCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSP-----------RLQAKLLRFLNDGTFRRVGEDHE 330 (511)
T ss_pred ecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCH-----------HHHHHHHHHhcCCceeecCCcce
Confidence 99985 466888855 3445699999999999999955554 99999999998743
Q ss_pred ----EEEEEecCchhHHHHHhh--Ccccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 309 ----VVVIFAGYSEPMKRVIAS--NEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 309 ----~~~i~a~~~~~~~~~~~~--~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
+.||++|..+........ ...|..|+. -.+++|++. ..++..+.++|+.+.+...+ ..-+.++++.+
T Consensus 331 v~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg----~p~pkl~~~~~ 406 (511)
T COG3283 331 VHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELG----VPRPKLAADLL 406 (511)
T ss_pred EEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhC----CCCCccCHHHH
Confidence 578887765544322110 133344653 345666665 68999999999998876655 34577888888
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhh
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNARENLDL 413 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~ 413 (445)
..+..+.| |||.|++.|++.+|+....-
T Consensus 407 ~~L~~y~W------pGNVRqL~N~iyRA~s~~Eg 434 (511)
T COG3283 407 TVLTRYAW------PGNVRQLKNAIYRALTLLEG 434 (511)
T ss_pred HHHHHcCC------CccHHHHHHHHHHHHHHhcc
Confidence 88888888 99999999999999876553
No 83
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.81 E-value=2.1e-19 Score=188.17 Aligned_cols=205 Identities=19% Similarity=0.223 Sum_probs=155.1
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
..+.+++|.++.++.+.+.+..+ +....+|+|+||+|||||++|++||..+.+. ..+|+.++
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~--------------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~----~~~~v~i~ 434 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV--------------AQSDSTVLILGETGTGKELIARAIHNLSGRN----NRRMVKMN 434 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCC----CCCeEEEe
Confidence 45667999999999988876654 4567799999999999999999999987653 34999999
Q ss_pred ccccc-----ccccCCch-------hHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC------
Q 013316 246 RTDLV-----GEFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------ 307 (445)
Q Consensus 246 ~~~l~-----~~~~g~~~-------~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------ 307 (445)
|+.+. +.+||+.. ......|+.+.+|+||||||+.+.. +.|.+|+..++++
T Consensus 435 c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~-----------~~Q~~L~~~l~~~~~~~~g 503 (686)
T PRK15429 435 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPL-----------ELQPKLLRVLQEQEFERLG 503 (686)
T ss_pred cccCChhHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCH-----------HHHHHHHHHHHhCCEEeCC
Confidence 98753 34667522 1223467889999999999988876 7888898888653
Q ss_pred -------cEEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCccc
Q 013316 308 -------KVVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCS 375 (445)
Q Consensus 308 -------~~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~ 375 (445)
++.+|++++.+...... ...+.|..|+. ..|.+|++. ++|+..++++++.+...+.+. . ...++
T Consensus 504 ~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~---~-~~~~s 579 (686)
T PRK15429 504 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGR---N-IDSIP 579 (686)
T ss_pred CCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCC---C-CCCcC
Confidence 35777777665543221 11233555664 568888887 689999999999887554332 1 23588
Q ss_pred HHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 376 MDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 376 ~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
++++..+..+.| |||.|+|+++++++..
T Consensus 580 ~~al~~L~~y~W------PGNvrEL~~~i~~a~~ 607 (686)
T PRK15429 580 AETLRTLSNMEW------PGNVRELENVIERAVL 607 (686)
T ss_pred HHHHHHHHhCCC------CCcHHHHHHHHHHHHH
Confidence 899999998888 9999999999999965
No 84
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=7.3e-19 Score=172.36 Aligned_cols=211 Identities=20% Similarity=0.282 Sum_probs=157.8
Q ss_pred hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316 170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 249 (445)
Q Consensus 170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l 249 (445)
+=.|++++|++|.+++.--++. +.....-++|+||||+|||++||.||..+++ .|+.++...+
T Consensus 412 DHYgm~dVKeRILEfiAV~kLr----------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR-------kFfRfSvGG~ 474 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLR----------GSVQGKILCFVGPPGVGKTSIAKSIARALNR-------KFFRFSVGGM 474 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhc----------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCC-------ceEEEecccc
Confidence 3789999999999987644322 1223345789999999999999999999999 8888876653
Q ss_pred c------c---cccCCchhHHHHHHHHc--cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC------------
Q 013316 250 V------G---EFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------------ 306 (445)
Q Consensus 250 ~------~---~~~g~~~~~~~~~~~~a--~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------------ 306 (445)
. + .|+|..+.++-+.++.. .+-+++|||||++.+.-+++.. ..||..+|.
T Consensus 475 tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPa-------sALLElLDPEQNanFlDHYLd 547 (906)
T KOG2004|consen 475 TDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPA-------SALLELLDPEQNANFLDHYLD 547 (906)
T ss_pred ccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChH-------HHHHHhcChhhccchhhhccc
Confidence 3 2 28888999998988876 4679999999999953332221 233444432
Q ss_pred -----CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHH
Q 013316 307 -----GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAA 381 (445)
Q Consensus 307 -----~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 381 (445)
.++.+|++.|.-++ +.|+|++|+ .+|+++-|..+|...|.+.||-.......... .-..+++.+++..
T Consensus 548 Vp~DLSkVLFicTAN~idt-----IP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~-~e~v~is~~al~~ 620 (906)
T KOG2004|consen 548 VPVDLSKVLFICTANVIDT-----IPPPLLDRM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLK-PEQVKISDDALLA 620 (906)
T ss_pred cccchhheEEEEecccccc-----CChhhhhhh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCC-HHhcCccHHHHHH
Confidence 46788888655433 379999999 99999999999999999999876543322111 1123567889999
Q ss_pred HHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhc
Q 013316 382 LIEKETTEKQRREMNGGLVDPMLVNARENLDLRLS 416 (445)
Q Consensus 382 ~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~ 416 (445)
++.+|+ |..| +|-|..-+++++|+.+.++.
T Consensus 621 lI~~Yc----rEaG-VRnLqk~iekI~Rk~Al~vv 650 (906)
T KOG2004|consen 621 LIERYC----REAG-VRNLQKQIEKICRKVALKVV 650 (906)
T ss_pred HHHHHH----HHHh-HHHHHHHHHHHHHHHHHHHH
Confidence 999998 4566 88999999999998887774
No 85
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.81 E-value=1.6e-18 Score=167.08 Aligned_cols=254 Identities=18% Similarity=0.270 Sum_probs=161.1
Q ss_pred HHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHc--CCC--C-CCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCC
Q 013316 163 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKAL--GLK--V-GARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL 236 (445)
Q Consensus 163 ~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~--~~~--~-~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~ 236 (445)
++...|++ ++||+.+++.+...+... ..+-.. ... . ......++||+||||||||++|+++|+.++.
T Consensus 70 ~i~~~L~~~ViGQe~A~~~l~~av~~h---~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~---- 142 (413)
T TIGR00382 70 EIKAHLDEYVIGQEQAKKVLSVAVYNH---YKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNV---- 142 (413)
T ss_pred HHHHHhcceecCHHHHHHHHHHHHHHH---HhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCC----
Confidence 34555655 899999998886533111 111100 000 0 0113468999999999999999999988765
Q ss_pred CCCCeEEeeccccc-ccccCCch-hHHHHHH-------HHccCcEEEEcCccccccCCCCCC--ch-hHHHHHHHHHhhc
Q 013316 237 PTDRVTEVQRTDLV-GEFVGHTG-PKTRRRI-------KEAEGGILFVDEAYRLIPMQKADD--KD-YGIEALEEIMSVM 304 (445)
Q Consensus 237 ~~~~~~~~~~~~l~-~~~~g~~~-~~~~~~~-------~~a~~~il~lDEid~l~~~~~~~~--~~-~~~~~~~~ll~~~ 304 (445)
+|..++++.+. ..|+|+.. ..+...+ +.+.++||||||||++++++.+.+ .+ .+..+|+.||+.|
T Consensus 143 ---pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iL 219 (413)
T TIGR00382 143 ---PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKII 219 (413)
T ss_pred ---CeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHh
Confidence 88888888765 34888753 3334433 455678999999999998643221 12 2236888899988
Q ss_pred cCC---------------cEEEEEecCc--------hhHH--------------------------H---------HH--
Q 013316 305 DGG---------------KVVVIFAGYS--------EPMK--------------------------R---------VI-- 324 (445)
Q Consensus 305 ~~~---------------~~~~i~a~~~--------~~~~--------------------------~---------~~-- 324 (445)
++. ..++|.+++- .... . +.
T Consensus 220 eG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~ 299 (413)
T TIGR00382 220 EGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKF 299 (413)
T ss_pred hccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHH
Confidence 531 1234444332 0000 0 00
Q ss_pred hhCcccccccccceeCCCCCHHHHHHHHHHH----HhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhh
Q 013316 325 ASNEGFCRRVTKFFHFNDFNSEELAKILHIK----MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLV 400 (445)
Q Consensus 325 ~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~----l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l 400 (445)
...|+|..|+|.++.|.+++.+++..|+... +++....+...++.+ .++++++.++....+ .+..| +|-|
T Consensus 300 g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L--~~t~~a~~~Ia~~~~---~~~~G-AR~L 373 (413)
T TIGR00382 300 GLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVEL--DFEEEALKAIAKKAL---ERKTG-ARGL 373 (413)
T ss_pred hhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEE--EECHHHHHHHHHhCC---CCCCC-chHH
Confidence 0239999999999999999999999999873 444444444445544 778889888876644 23344 8999
Q ss_pred HHHHHHHHHhhhhhhccCCCChhhhhhccHHHHH
Q 013316 401 DPMLVNARENLDLRLSFDCLDTDELRTITLEDLE 434 (445)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 434 (445)
+.++++.+......+- ..+......|+.+.+.
T Consensus 374 r~iie~~l~~~m~e~p--~~~~~~~v~i~~~~v~ 405 (413)
T TIGR00382 374 RSIVEGLLLDVMFDLP--SLEDLEKVVITKETVL 405 (413)
T ss_pred HHHHHHhhHHHHhhCC--CCCCCcEEEECHHHHc
Confidence 9999998665443331 1122233567777664
No 86
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.80 E-value=2.2e-19 Score=181.36 Aligned_cols=110 Identities=22% Similarity=0.294 Sum_probs=70.6
Q ss_pred CCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 013316 36 NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA 115 (445)
Q Consensus 36 ~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~ 115 (445)
.|++++..+...|+||||+|+..|+.+++++|+++ |++++.+|..|.||||+|+..++.+++++|++.|++++.+|
T Consensus 156 ~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~----gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d 231 (477)
T PHA02878 156 YGADINMKDRHKGNTALHYATENKDQRLTELLLSY----GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARD 231 (477)
T ss_pred cCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHC----CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCC
Confidence 34555555542266777777777777777777763 66666666777777777777777777777777777777777
Q ss_pred cCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhh
Q 013316 116 NEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 149 (445)
Q Consensus 116 ~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~ 149 (445)
..|.||||+++...+..+++++|+.+|++.+.+.
T Consensus 232 ~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~ 265 (477)
T PHA02878 232 KCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS 265 (477)
T ss_pred CCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccC
Confidence 7777777333333356667777776666655443
No 87
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.80 E-value=1.2e-18 Score=184.86 Aligned_cols=173 Identities=21% Similarity=0.258 Sum_probs=139.4
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHH---cCCCCCCCeEE
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM---VGILPTDRVTE 243 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~---~~~~~~~~~~~ 243 (445)
.++.++|.+...+++.+++. .....+++|+||||||||++|+.+|..+.. +..+....++.
T Consensus 177 ~~~~~igr~~ei~~~~~~L~----------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~ 240 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILG----------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT 240 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHc----------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 45679999988888777532 345678999999999999999999999864 22234558899
Q ss_pred eeccccc--ccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCch
Q 013316 244 VQRTDLV--GEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE 318 (445)
Q Consensus 244 ~~~~~l~--~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~ 318 (445)
++.+.+. ..|.|+.+..+.++|+++ .++||||||||.+.+.++..+. ..+.+.|...+.++.+.+|++||..
T Consensus 241 l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~---~~~a~lLkp~l~rg~l~~IgaTt~~ 317 (821)
T CHL00095 241 LDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA---IDAANILKPALARGELQCIGATTLD 317 (821)
T ss_pred eeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc---ccHHHHhHHHHhCCCcEEEEeCCHH
Confidence 9988876 458888888999999765 3579999999999986653222 2556677788899999999999999
Q ss_pred hHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcc
Q 013316 319 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 359 (445)
Q Consensus 319 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~ 359 (445)
++...+..||+|.+|| ..|.++.|+.++...|++......
T Consensus 318 ey~~~ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~~ 357 (821)
T CHL00095 318 EYRKHIEKDPALERRF-QPVYVGEPSVEETIEILFGLRSRY 357 (821)
T ss_pred HHHHHHhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHHH
Confidence 9988888899999999 678999999999999998765543
No 88
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.80 E-value=1.7e-19 Score=180.73 Aligned_cols=268 Identities=16% Similarity=0.160 Sum_probs=182.2
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHHhHHHHH
Q 013316 86 ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELE 165 (445)
Q Consensus 86 ~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~ 165 (445)
.+|+.+.+..++.+.....++.|++ +|+.++....++...+.............. ...... ..
T Consensus 73 ~~piI~lt~~~~~~~~~~a~~~Ga~------------dyl~KP~~~~~L~~~i~~~~~~~~l~~~~~---~l~~~~--~~ 135 (445)
T TIGR02915 73 DTKVIVITGNDDRENAVKAIGLGAY------------DFYQKPIDPDVLKLIVDRAFHLYTLETENR---RLQSAL--GG 135 (445)
T ss_pred CCCEEEEecCCCHHHHHHHHHCCcc------------EEEeCCCCHHHHHHHHhhhhhhhhhHHHHH---Hhhhhh--hc
Confidence 3455555556667777778888888 777777776666655532221110000000 000000 01
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
..+..++|.+..++.+.+.+..+ .....+++++|++||||+++|+++|..+.. ...+|+.++
T Consensus 136 ~~~~~lig~s~~~~~l~~~i~~~--------------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~----~~~~~v~v~ 197 (445)
T TIGR02915 136 TALRGLITSSPGMQKICRTIEKI--------------APSDITVLLLGESGTGKEVLARALHQLSDR----KDKRFVAIN 197 (445)
T ss_pred ccccceeecCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCcCHHHHHHHHHHhCCc----CCCCeEEEE
Confidence 13445899888888877765543 345678999999999999999999988764 344899999
Q ss_pred ccccc-----ccccCCch-------hHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC------
Q 013316 246 RTDLV-----GEFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------ 307 (445)
Q Consensus 246 ~~~l~-----~~~~g~~~-------~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------ 307 (445)
|+.+. +.+||+.. ......|+.+.+|+||||||+.+.+ ..|..|++.++++
T Consensus 198 c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~-----------~~q~~l~~~l~~~~~~~~~ 266 (445)
T TIGR02915 198 CAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPL-----------NLQAKLLRFLQERVIERLG 266 (445)
T ss_pred CCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCH-----------HHHHHHHHHHhhCeEEeCC
Confidence 99853 34566422 1123457778999999999998887 7888899888753
Q ss_pred -------cEEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCccc
Q 013316 308 -------KVVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCS 375 (445)
Q Consensus 308 -------~~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~ 375 (445)
++.+|++++.+....+. ...+.|..|+. ..|.+|++. .+|+..++++++++.....+. -...++
T Consensus 267 ~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~----~~~~~~ 342 (445)
T TIGR02915 267 GREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKR----KTKGFT 342 (445)
T ss_pred CCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCC----CCCCCC
Confidence 35777777666543221 12344556664 667888887 689999999999987544331 124688
Q ss_pred HHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 376 MDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 376 ~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
++++..+..+.| |||.|+|+++++++..
T Consensus 343 ~~a~~~L~~~~w------pgNvreL~~~i~~a~~ 370 (445)
T TIGR02915 343 DDALRALEAHAW------PGNVRELENKVKRAVI 370 (445)
T ss_pred HHHHHHHHhCCC------CChHHHHHHHHHHHHH
Confidence 899999999888 9999999999999965
No 89
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.80 E-value=2.5e-19 Score=177.82 Aligned_cols=141 Identities=21% Similarity=0.251 Sum_probs=85.7
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCC---------------------------------CC
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNP---------------------------------VM 47 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~---------------------------------~~ 47 (445)
+.|++++... .|.||||+|+..|+.++++.|+. .|++++..+. ..
T Consensus 23 ~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 101 (413)
T PHA02875 23 DIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMK-HGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKD 101 (413)
T ss_pred HCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCC
Confidence 3455555554 46666666666666666655543 3444443322 14
Q ss_pred CChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhc
Q 013316 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSN 127 (445)
Q Consensus 48 g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~ 127 (445)
|+||||+|+..|+.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||| |+|+
T Consensus 102 g~tpL~~A~~~~~~~iv~~Ll~~----gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL-~~A~ 176 (413)
T PHA02875 102 GMTPLHLATILKKLDIMKLLIAR----GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPL-IIAM 176 (413)
T ss_pred CCCHHHHHHHhCCHHHHHHHHhC----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH-HHHH
Confidence 56666666666666666666663 566666666666666666666666666666666666666666666666 5555
Q ss_pred CCCChHHHHHHHhhhhhHHhh
Q 013316 128 GPGSAKLRELLLWHSEEQRKR 148 (445)
Q Consensus 128 ~~~~~~i~~~ll~~~~~~~~~ 148 (445)
..++.+++++|+++|+++...
T Consensus 177 ~~g~~eiv~~Ll~~ga~~n~~ 197 (413)
T PHA02875 177 AKGDIAICKMLLDSGANIDYF 197 (413)
T ss_pred HcCCHHHHHHHHhCCCCCCcC
Confidence 566666666666666655443
No 90
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.80 E-value=1.9e-19 Score=187.40 Aligned_cols=203 Identities=16% Similarity=0.176 Sum_probs=154.8
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|.++.++++.+.+..+ +....+|+|+|++||||+++|++||..+.+ ...+|+.++|
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~--------------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r----~~~pfv~vnc 384 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQA--------------AKSSFPVLLCGEEGVGKALLAQAIHNESER----AAGPYIAVNC 384 (638)
T ss_pred cccceEECCHHHHHHHHHHHHH--------------hCcCCCEEEECCCCcCHHHHHHHHHHhCCc----cCCCeEEEEC
Confidence 4778999999988888876655 456778999999999999999999998765 3349999999
Q ss_pred ccc-----cccccCCch----hHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC----------
Q 013316 247 TDL-----VGEFVGHTG----PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG---------- 307 (445)
Q Consensus 247 ~~l-----~~~~~g~~~----~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~---------- 307 (445)
+.+ .+.+||+.. ......|+.|.+|+||||||+.+.. ..|..|+..++++
T Consensus 385 ~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~-----------~~Q~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 385 QLYPDEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSP-----------ELQSALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred CCCChHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCH-----------HHHHHHHHHHhcCcEEeCCCCce
Confidence 875 345777531 1112357788999999999988876 7888999988764
Q ss_pred ---cEEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 308 ---KVVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 308 ---~~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
++.+|++++.+....+. ...+.|..|+. ..|.+|++. .+|+..++++++.+.....+. ...++++++
T Consensus 454 ~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~-----~~~~s~~a~ 528 (638)
T PRK11388 454 IPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFST-----RLKIDDDAL 528 (638)
T ss_pred EEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCC-----CCCcCHHHH
Confidence 35677777766543221 11344556774 678889888 479999999999886543321 236888999
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
..+..+.| |||.|+|+++++++..
T Consensus 529 ~~L~~y~W------PGNvreL~~~l~~~~~ 552 (638)
T PRK11388 529 ARLVSYRW------PGNDFELRSVIENLAL 552 (638)
T ss_pred HHHHcCCC------CChHHHHHHHHHHHHH
Confidence 99998888 9999999999999864
No 91
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.2e-18 Score=153.26 Aligned_cols=230 Identities=17% Similarity=0.338 Sum_probs=157.3
Q ss_pred HHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCC---CCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC
Q 013316 163 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGL---KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT 238 (445)
Q Consensus 163 ~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~ 238 (445)
++...+++ ++||+.+|+.|.= ..++.+.+-... ..-.-...++|+.||+|+|||.+|+.+|+.++.
T Consensus 54 eik~~Ld~YVIGQe~AKKvLsV----AVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnV------ 123 (408)
T COG1219 54 EIKAHLDEYVIGQEQAKKVLSV----AVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNV------ 123 (408)
T ss_pred HHHHHhhhheecchhhhceeee----eehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCC------
Confidence 34445555 8999999876652 122222211111 101123468999999999999999999999988
Q ss_pred CCeEEeeccccc-ccccCCchhHH-HHHHH-------HccCcEEEEcCccccccCCCCCC--ch-hHHHHHHHHHhhccC
Q 013316 239 DRVTEVQRTDLV-GEFVGHTGPKT-RRRIK-------EAEGGILFVDEAYRLIPMQKADD--KD-YGIEALEEIMSVMDG 306 (445)
Q Consensus 239 ~~~~~~~~~~l~-~~~~g~~~~~~-~~~~~-------~a~~~il~lDEid~l~~~~~~~~--~~-~~~~~~~~ll~~~~~ 306 (445)
||.-.+++.|. ..|+|+.-.++ .+++. .|+.||+||||||+++.+..+.+ .+ .+.-+|..||+.+++
T Consensus 124 -PFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 124 -PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred -CeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcC
Confidence 89888888885 44999876654 45554 34669999999999997664322 22 334678889999985
Q ss_pred -----------------------CcEEEEEecCchhHHHHHhhC------------------------------------
Q 013316 307 -----------------------GKVVVIFAGYSEPMKRVIASN------------------------------------ 327 (445)
Q Consensus 307 -----------------------~~~~~i~a~~~~~~~~~~~~~------------------------------------ 327 (445)
.++.+|+.+.-..++.++...
T Consensus 203 TvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkF 282 (408)
T COG1219 203 TVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKF 282 (408)
T ss_pred ceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHc
Confidence 135777766544444433222
Q ss_pred ---cccccccccceeCCCCCHHHHHHHHH----HHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhh
Q 013316 328 ---EGFCRRVTKFFHFNDFNSEELAKILH----IKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLV 400 (445)
Q Consensus 328 ---~~l~~R~~~~i~~~~~~~~~~~~il~----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l 400 (445)
|.|..|++.+-.+..++.+++..||. ..++++..-+...++.+ .++.+++.+...... .|..| +|-|
T Consensus 283 GLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L--~F~~~AL~~IA~~A~---~rkTG-ARGL 356 (408)
T COG1219 283 GLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVEL--EFTEEALKAIAKKAI---ERKTG-ARGL 356 (408)
T ss_pred CCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceE--EEcHHHHHHHHHHHH---Hhccc-hhHH
Confidence 88999999999999999999999984 34444443344444444 678889887765554 34455 8999
Q ss_pred HHHHHHHHH
Q 013316 401 DPMLVNARE 409 (445)
Q Consensus 401 ~~~~~~~~~ 409 (445)
|.++|..+-
T Consensus 357 RsI~E~~ll 365 (408)
T COG1219 357 RSIIEELLL 365 (408)
T ss_pred HHHHHHHHH
Confidence 999998844
No 92
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.80 E-value=1.7e-19 Score=167.91 Aligned_cols=126 Identities=31% Similarity=0.400 Sum_probs=79.6
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~ 91 (445)
.|.+||..|+..||+++|+.|++ ++++||..+. ...|||..||.-||.++|++|+++ |+|+++.|..|.|.||+
T Consensus 83 egappLWaAsaAGHl~vVk~L~~-~ga~VN~tT~-TNStPLraACfDG~leivKyLvE~----gad~~IanrhGhTcLmI 156 (615)
T KOG0508|consen 83 EGAPPLWAASAAGHLEVVKLLLR-RGASVNDTTR-TNSTPLRAACFDGHLEIVKYLVEH----GADPEIANRHGHTCLMI 156 (615)
T ss_pred CCCchhhHHhccCcHHHHHHHHH-hcCccccccc-cCCccHHHHHhcchhHHHHHHHHc----CCCCcccccCCCeeEEe
Confidence 46666666666666666665554 3466665554 345666666666666666666663 66666666666666666
Q ss_pred HHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144 (445)
Q Consensus 92 A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~ 144 (445)
||..|+.+++++|++.|||+|.++..|+|+| |.+...++.+++++|+++++.
T Consensus 157 a~ykGh~~I~qyLle~gADvn~ks~kGNTAL-H~caEsG~vdivq~Ll~~ga~ 208 (615)
T KOG0508|consen 157 ACYKGHVDIAQYLLEQGADVNAKSYKGNTAL-HDCAESGSVDIVQLLLKHGAK 208 (615)
T ss_pred eeccCchHHHHHHHHhCCCcchhcccCchHH-HhhhhcccHHHHHHHHhCCce
Confidence 6666666666666666666666666666666 555556666666666665543
No 93
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.80 E-value=2.6e-18 Score=180.37 Aligned_cols=218 Identities=22% Similarity=0.299 Sum_probs=154.7
Q ss_pred HHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCe
Q 013316 163 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV 241 (445)
Q Consensus 163 ~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~ 241 (445)
.+...+.+ ++||+.+++.+.+.+.. ...+......+..+++|+||||||||++|+++|+.++. ++
T Consensus 447 ~l~~~l~~~v~GQ~~ai~~l~~~i~~-------~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~-------~~ 512 (731)
T TIGR02639 447 NLEKNLKAKIFGQDEAIDSLVSSIKR-------SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV-------HL 512 (731)
T ss_pred HHHHHHhcceeCcHHHHHHHHHHHHH-------HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC-------Ce
Confidence 34445544 99999998888875542 23333322334456899999999999999999999865 78
Q ss_pred EEeecccccc---------c---ccCC-chhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc
Q 013316 242 TEVQRTDLVG---------E---FVGH-TGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK 308 (445)
Q Consensus 242 ~~~~~~~l~~---------~---~~g~-~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~ 308 (445)
+.++++.+.. . |+|. ....+.+.++...++||||||||++++ ++++.|++.|+++.
T Consensus 513 ~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~-----------~~~~~Ll~~ld~g~ 581 (731)
T TIGR02639 513 ERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP-----------DIYNILLQVMDYAT 581 (731)
T ss_pred EEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH-----------HHHHHHHHhhccCe
Confidence 8888776432 2 3343 233466777777889999999999987 88999999998752
Q ss_pred -------------EEEEEecCchhHH-------------------HH-HhhCcccccccccceeCCCCCHHHHHHHHHHH
Q 013316 309 -------------VVVIFAGYSEPMK-------------------RV-IASNEGFCRRVTKFFHFNDFNSEELAKILHIK 355 (445)
Q Consensus 309 -------------~~~i~a~~~~~~~-------------------~~-~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 355 (445)
.++|++++..... .+ -...|+|+.|||.++.|.+++.+++.+|++..
T Consensus 582 ~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~ 661 (731)
T TIGR02639 582 LTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKF 661 (731)
T ss_pred eecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHH
Confidence 3466665432100 00 01258899999999999999999999999999
Q ss_pred HhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhh
Q 013316 356 MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 411 (445)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~ 411 (445)
+.+....+...++.+ .++++++.++....+. + ...+|.++..+++.+...
T Consensus 662 L~~l~~~l~~~~~~l--~i~~~a~~~La~~~~~---~-~~GaR~l~r~i~~~~~~~ 711 (731)
T TIGR02639 662 VDELSKQLNEKNIKL--ELTDDAKKYLAEKGYD---E-EFGARPLARVIQEEIKKP 711 (731)
T ss_pred HHHHHHHHHhCCCeE--EeCHHHHHHHHHhCCC---c-ccCchHHHHHHHHHhHHH
Confidence 988766665444444 6778888877765432 2 234888888888775543
No 94
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.80 E-value=5e-19 Score=176.61 Aligned_cols=121 Identities=29% Similarity=0.348 Sum_probs=103.8
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~ 80 (445)
+.|++++..+ .|.||||+||..|+.++++.|+. .|++++..+. .|.||||+|+..|+.+++++|++. |++++.
T Consensus 112 ~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~-~gad~n~~d~-~g~tpLh~A~~~~~~~iv~~Ll~~----g~~~n~ 185 (434)
T PHA02874 112 DCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFE-YGADVNIEDD-NGCYPIHIAIKHNFFDIIKLLLEK----GAYANV 185 (434)
T ss_pred HCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHh-CCCCCCCcCC-CCCCHHHHHHHCCcHHHHHHHHHC----CCCCCC
Confidence 4567777766 69999999999999999987775 6889999987 799999999999999999999995 788999
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCC
Q 013316 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGP 129 (445)
Q Consensus 81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~ 129 (445)
.+..|.||||+|+..|+.+++++|++.|++++.++..|.||| |.|...
T Consensus 186 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL-~~A~~~ 233 (434)
T PHA02874 186 KDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPL-HNAIIH 233 (434)
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHH-HHHHHC
Confidence 999999999999999999999999999988777766666666 444433
No 95
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.2e-18 Score=169.99 Aligned_cols=235 Identities=17% Similarity=0.244 Sum_probs=167.4
Q ss_pred HHHHH-hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316 165 ENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 243 (445)
Q Consensus 165 ~~~~~-~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~ 243 (445)
...|+ +=.|.+.+|++|.+++.-.+.. .....+-++|+||||+|||++++.||+.+++ .|+.
T Consensus 318 ~~iLd~dHYGLekVKeRIlEyLAV~~l~----------~~~kGpILcLVGPPGVGKTSLgkSIA~al~R-------kfvR 380 (782)
T COG0466 318 EKILDKDHYGLEKVKERILEYLAVQKLT----------KKLKGPILCLVGPPGVGKTSLGKSIAKALGR-------KFVR 380 (782)
T ss_pred HHHhcccccCchhHHHHHHHHHHHHHHh----------ccCCCcEEEEECCCCCCchhHHHHHHHHhCC-------CEEE
Confidence 33343 3789999999999976543321 1112245779999999999999999999999 9999
Q ss_pred eecccccc---------cccCCchhHHHHHHHHcc--CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC------
Q 013316 244 VQRTDLVG---------EFVGHTGPKTRRRIKEAE--GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------ 306 (445)
Q Consensus 244 ~~~~~l~~---------~~~g~~~~~~~~~~~~a~--~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------ 306 (445)
++...+.. .|+|..+.++-+.+.++. +-+++|||||++.++-+++.. +.||..+|.
T Consensus 381 ~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPa-------SALLEVLDPEQN~~F 453 (782)
T COG0466 381 ISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPA-------SALLEVLDPEQNNTF 453 (782)
T ss_pred EecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChH-------HHHHhhcCHhhcCch
Confidence 88776432 288888888888888774 589999999999875443222 345555542
Q ss_pred -----------CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhccccccccccc-ccCCcc
Q 013316 307 -----------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF-KLHSSC 374 (445)
Q Consensus 307 -----------~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~-~~~~~~ 374 (445)
.++.+|++.|.-.. +..+|++|+ .+|+++.|+.+|..+|.+.||-...... .++ .-.-.+
T Consensus 454 ~DhYLev~yDLS~VmFiaTANsl~t-----IP~PLlDRM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~--~gL~~~el~i 525 (782)
T COG0466 454 SDHYLEVPYDLSKVMFIATANSLDT-----IPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLIPKQLKE--HGLKKGELTI 525 (782)
T ss_pred hhccccCccchhheEEEeecCcccc-----CChHHhcce-eeeeecCCChHHHHHHHHHhcchHHHHH--cCCCccceee
Confidence 45777777554322 367899999 9999999999999999998876443221 111 113467
Q ss_pred cHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316 375 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 438 (445)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~ 438 (445)
+++++..++.+|+ |..| +|.|+..+...+|.....+...... ....|+..++.+.+.
T Consensus 526 ~d~ai~~iI~~YT----REAG-VR~LeR~i~ki~RK~~~~i~~~~~k--~~~~i~~~~l~~yLG 582 (782)
T COG0466 526 TDEAIKDIIRYYT----REAG-VRNLEREIAKICRKAAKKILLKKEK--SIVKIDEKNLKKYLG 582 (782)
T ss_pred cHHHHHHHHHHHh----Hhhh-hhHHHHHHHHHHHHHHHHHHhcCcc--cceeeCHHHHHHHhC
Confidence 8889999998887 5567 8889999999888877766432211 114688888877664
No 96
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.79 E-value=2.6e-18 Score=179.42 Aligned_cols=237 Identities=15% Similarity=0.196 Sum_probs=166.2
Q ss_pred HHHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC
Q 013316 162 DELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 240 (445)
Q Consensus 162 ~~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~ 240 (445)
.+....|+. ..|++.+|+++.+++...... .......++|+||||||||++|+.+++.++. +
T Consensus 314 ~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~----------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~-------~ 376 (784)
T PRK10787 314 RQAQEILDTDHYGLERVKDRILEYLAVQSRV----------NKIKGPILCLVGPPGVGKTSLGQSIAKATGR-------K 376 (784)
T ss_pred HHHHHHhhhhccCHHHHHHHHHHHHHHHHhc----------ccCCCceEEEECCCCCCHHHHHHHHHHHhCC-------C
Confidence 344555665 999999999999876533211 1123447999999999999999999999876 7
Q ss_pred eEEeeccccc---------ccccCCchhHHHHHHHHc--cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC---
Q 013316 241 VTEVQRTDLV---------GEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--- 306 (445)
Q Consensus 241 ~~~~~~~~l~---------~~~~g~~~~~~~~~~~~a--~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--- 306 (445)
|+.++.+... ..|.|.....+...+..+ .+.|+||||||++.+..+. +.++.|+..+|.
T Consensus 377 ~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g-------~~~~aLlevld~~~~ 449 (784)
T PRK10787 377 YVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRG-------DPASALLEVLDPEQN 449 (784)
T ss_pred EEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCC-------CHHHHHHHHhccccE
Confidence 7777766532 136666666666666654 3579999999999875432 234566666653
Q ss_pred --------------CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHh-cccccccccccccC
Q 013316 307 --------------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMN-NQTEDSLLYGFKLH 371 (445)
Q Consensus 307 --------------~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~-~~~~~~~~~~~~~~ 371 (445)
+++++|++++.. .++|+|++|| ..|.|+.|+.+|..+|++.++. +...+.+..+ ..
T Consensus 450 ~~~~d~~~~~~~dls~v~~i~TaN~~------~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~--~~ 520 (784)
T PRK10787 450 VAFSDHYLEVDYDLSDVMFVATSNSM------NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKK--GE 520 (784)
T ss_pred EEEecccccccccCCceEEEEcCCCC------CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCC--Ce
Confidence 567777765432 2489999999 6899999999999999999995 2222222221 23
Q ss_pred CcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316 372 SSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 438 (445)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~ 438 (445)
..++.+++.+++..|. +..| +|.++..+++.++....+..... ......|+.+++.+.+.
T Consensus 521 l~i~~~ai~~ii~~yt----~e~G-aR~LeR~I~~i~r~~l~~~~~~~--~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 521 LTVDDSAIIGIIRYYT----REAG-VRSLEREISKLCRKAVKQLLLDK--SLKHIEINGDNLHDYLG 580 (784)
T ss_pred EEECHHHHHHHHHhCC----cccC-CcHHHHHHHHHHHHHHHHHHhcC--CCceeeecHHHHHHHhC
Confidence 4677888888876443 5566 99999999999887776653221 11335789999887765
No 97
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=4.3e-18 Score=165.46 Aligned_cols=187 Identities=16% Similarity=0.168 Sum_probs=131.8
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 237 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~-------- 237 (445)
..|++++|++.+...|..++.. ...+..+||+||||||||++|+.+|+.+.+.....
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~---------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~ 79 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKS---------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence 4688899999999988876542 12334589999999999999999999987632110
Q ss_pred ---------CCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316 238 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 301 (445)
Q Consensus 238 ---------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll 301 (445)
...|++++++.- .....++++.+.. ++.|+||||+|.+.. .+++.||
T Consensus 80 sC~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-----------~A~NALL 142 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-----------QSFNALL 142 (484)
T ss_pred HHHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-----------HHHHHHH
Confidence 112333333211 0123344443322 346999999999976 7889999
Q ss_pred hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
+.|++ ..+++|++|+... . +.+++++|| ..+.|.+++.+++.+.+++.+.+.. ..++++++
T Consensus 143 KtLEEPp~~viFILaTte~~--k---I~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Eg-----------i~~e~eAL 205 (484)
T PRK14956 143 KTLEEPPAHIVFILATTEFH--K---IPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIEN-----------VQYDQEGL 205 (484)
T ss_pred HHhhcCCCceEEEeecCChh--h---ccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99997 7788888877632 2 278899999 8899999999999999998887641 24566776
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNAR 408 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~ 408 (445)
. ++...+. |+.|.+-+++++++
T Consensus 206 ~-~Ia~~S~------Gd~RdAL~lLeq~i 227 (484)
T PRK14956 206 F-WIAKKGD------GSVRDMLSFMEQAI 227 (484)
T ss_pred H-HHHHHcC------ChHHHHHHHHHHHH
Confidence 6 6667774 45555666777763
No 98
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.79 E-value=5.2e-19 Score=176.48 Aligned_cols=132 Identities=20% Similarity=0.265 Sum_probs=66.9
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCC-------------------
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPG------------------- 72 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~------------------- 72 (445)
.|.||||.|+..|+.++++.|+. .|+++|..+. .|.||||+|+..|+.+++++|++.+.
T Consensus 34 ~~~tpL~~A~~~g~~~iv~~Ll~-~Ga~~n~~~~-~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll 111 (434)
T PHA02874 34 ETTTPLIDAIRSGDAKIVELFIK-HGADINHINT-KIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTIL 111 (434)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHH
Confidence 34555555555555555554442 3455554443 35555555555555555555544321
Q ss_pred CCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHH
Q 013316 73 NDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 146 (445)
Q Consensus 73 ~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~ 146 (445)
..|++++.++..|.||||+|+..|+.+++++|++.|++++.+|..|.||| |+|+..++.+++++|++++++..
T Consensus 112 ~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpL-h~A~~~~~~~iv~~Ll~~g~~~n 184 (434)
T PHA02874 112 DCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPI-HIAIKHNFFDIIKLLLEKGAYAN 184 (434)
T ss_pred HCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHH-HHHHHCCcHHHHHHHHHCCCCCC
Confidence 12445555555555555555555555555555555555555555555555 44444445555555555554433
No 99
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.79 E-value=1.1e-18 Score=141.93 Aligned_cols=118 Identities=36% Similarity=0.367 Sum_probs=106.4
Q ss_pred hHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcC
Q 013316 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG 96 (445)
Q Consensus 17 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g 96 (445)
+.+|+..|.+..|+.||...+..+|.+|. +|.||||.|+.+||.+||+.|+.. |++.+.+...|+||||-||..+
T Consensus 67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~-D~YTpLHRAaYn~h~div~~ll~~----gAn~~a~T~~GWTPLhSAckWn 141 (228)
T KOG0512|consen 67 LLWAAEKNRLTEVQRLLSEKANHVNTRDE-DEYTPLHRAAYNGHLDIVHELLLS----GANKEAKTNEGWTPLHSACKWN 141 (228)
T ss_pred HHHHHhhccHHHHHHHHHhcccccccccc-ccccHHHHHHhcCchHHHHHHHHc----cCCcccccccCccchhhhhccc
Confidence 67999999999999999999999999997 899999999999999999999884 8999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHH
Q 013316 97 CNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139 (445)
Q Consensus 97 ~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll 139 (445)
+.+++.+|+.+|+|+|+......||||.++...+....+.+|+
T Consensus 142 N~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll 184 (228)
T KOG0512|consen 142 NFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLL 184 (228)
T ss_pred chhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHh
Confidence 9999999999999999999999999955555455555555554
No 100
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.78 E-value=6.9e-18 Score=179.66 Aligned_cols=220 Identities=20% Similarity=0.305 Sum_probs=158.5
Q ss_pred HHHHHH-hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeE
Q 013316 164 LENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 242 (445)
Q Consensus 164 ~~~~~~-~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~ 242 (445)
++..+. .++|++.++..+.+.+... ..++.....+...++|+||||||||++|++||+.+... ..+++
T Consensus 559 l~~~l~~~v~GQ~~av~~v~~~i~~~-------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~----~~~~i 627 (852)
T TIGR03346 559 MEEVLHERVVGQDEAVEAVSDAIRRS-------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD----EDAMV 627 (852)
T ss_pred HHHHhhcccCCChHHHHHHHHHHHHH-------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC----CCcEE
Confidence 344443 4999999999988865533 22232223345579999999999999999999988642 23788
Q ss_pred Eeecccccc-----c-------ccCCc-hhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc-
Q 013316 243 EVQRTDLVG-----E-------FVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK- 308 (445)
Q Consensus 243 ~~~~~~l~~-----~-------~~g~~-~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~- 308 (445)
.++++.+.. . |+|+. ...+...+....++|||||||+++.+ ++++.|++.++++.
T Consensus 628 ~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~-----------~v~~~Ll~~l~~g~l 696 (852)
T TIGR03346 628 RIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP-----------DVFNVLLQVLDDGRL 696 (852)
T ss_pred EEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH-----------HHHHHHHHHHhcCce
Confidence 888876432 1 34543 34556666667789999999999987 88999999997642
Q ss_pred ------------EEEEEecCchhH--HH------------------HHhhCcccccccccceeCCCCCHHHHHHHHHHHH
Q 013316 309 ------------VVVIFAGYSEPM--KR------------------VIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM 356 (445)
Q Consensus 309 ------------~~~i~a~~~~~~--~~------------------~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l 356 (445)
.++|++++.... .. --.-.|.|..|++.++.|.+++.+++.+|+...+
T Consensus 697 ~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L 776 (852)
T TIGR03346 697 TDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQL 776 (852)
T ss_pred ecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHH
Confidence 346666654211 00 0012488999999999999999999999999999
Q ss_pred hcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhh
Q 013316 357 NNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 411 (445)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~ 411 (445)
......+...++ ...++++++..+..+.|. .++|+|.|++++++.+...
T Consensus 777 ~~l~~~l~~~~~--~l~i~~~a~~~L~~~~~~----~~~gaR~L~~~i~~~i~~~ 825 (852)
T TIGR03346 777 GRLRKRLAERKI--TLELSDAALDFLAEAGYD----PVYGARPLKRAIQREIENP 825 (852)
T ss_pred HHHHHHHHHCCC--eecCCHHHHHHHHHhCCC----CCCCchhHHHHHHHHHHHH
Confidence 876555444433 357889999988877663 3689999999999887543
No 101
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.78 E-value=1e-18 Score=173.51 Aligned_cols=136 Identities=24% Similarity=0.216 Sum_probs=96.3
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccC---------
Q 013316 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM--------- 83 (445)
Q Consensus 13 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~--------- 83 (445)
+.++||.|+..|+.++++.|+. .|+++|..+. .|.||||+|+..|+.+++++|+++ |++++..+.
T Consensus 2 ~~~~L~~A~~~g~~~iv~~Ll~-~g~~~n~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~----ga~~~~~~~~~~t~L~~A 75 (413)
T PHA02875 2 DQVALCDAILFGELDIARRLLD-IGINPNFEIY-DGISPIKLAMKFRDSEAIKLLMKH----GAIPDVKYPDIESELHDA 75 (413)
T ss_pred CchHHHHHHHhCCHHHHHHHHH-CCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHhC----CCCccccCCCcccHHHHH
Confidence 4689999999999999998885 6899999886 799999999999999999999996 555554433
Q ss_pred -------------------------CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHH
Q 013316 84 -------------------------YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138 (445)
Q Consensus 84 -------------------------~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~l 138 (445)
.|.||||+|+..|+.+++++|+++|++++.++..|.||| |+|+..++.+++++|
T Consensus 76 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpL-h~A~~~~~~~~v~~L 154 (413)
T PHA02875 76 VEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPL-HLAVMMGDIKGIELL 154 (413)
T ss_pred HHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHH
Confidence 455666666666666666666666666666666666666 555555556666666
Q ss_pred HhhhhhHHhhhhhhhhh
Q 013316 139 LWHSEEQRKRRALEACS 155 (445)
Q Consensus 139 l~~~~~~~~~~~~~~~~ 155 (445)
++++++...++..+.++
T Consensus 155 l~~g~~~~~~d~~g~Tp 171 (413)
T PHA02875 155 IDHKACLDIEDCCGCTP 171 (413)
T ss_pred HhcCCCCCCCCCCCCCH
Confidence 66655544444333333
No 102
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.78 E-value=3e-18 Score=153.07 Aligned_cols=183 Identities=22% Similarity=0.275 Sum_probs=129.0
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
..+++++||+.+++.|...+. ....+++|||||||||||+.|+++|.++..+.. ....+.+.+
T Consensus 33 kt~de~~gQe~vV~~L~~a~~----------------~~~lp~~LFyGPpGTGKTStalafar~L~~~~~-~~~rvl~ln 95 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALL----------------RRILPHYLFYGPPGTGKTSTALAFARALNCEQL-FPCRVLELN 95 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHh----------------hcCCceEEeeCCCCCcHhHHHHHHHHHhcCccc-cccchhhhc
Confidence 467889999999998887543 234579999999999999999999999987333 233455667
Q ss_pred cccccccccCCch-hHHHHHHHHc---------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEE
Q 013316 246 RTDLVGEFVGHTG-PKTRRRIKEA---------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIF 313 (445)
Q Consensus 246 ~~~l~~~~~g~~~-~~~~~~~~~a---------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~ 313 (445)
.|+..|.-++... +...++.... ...|++|||.|.+.. +++..|.+.||+ ...++|+
T Consensus 96 aSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts-----------daq~aLrr~mE~~s~~trFiL 164 (346)
T KOG0989|consen 96 ASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS-----------DAQAALRRTMEDFSRTTRFIL 164 (346)
T ss_pred ccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhH-----------HHHHHHHHHHhccccceEEEE
Confidence 7776555443221 1111111111 127999999988886 889999999987 3344444
Q ss_pred ecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhc
Q 013316 314 AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 393 (445)
Q Consensus 314 a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 393 (445)
-++. ..++ -+++.+|+ .++.|+++..+++...|+....++ ..+++++++. ++...++||+|.
T Consensus 165 Icny--lsri---i~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E-----------~v~~d~~al~-~I~~~S~GdLR~ 226 (346)
T KOG0989|consen 165 ICNY--LSRI---IRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKE-----------GVDIDDDALK-LIAKISDGDLRR 226 (346)
T ss_pred EcCC--hhhC---ChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHh-----------CCCCCHHHHH-HHHHHcCCcHHH
Confidence 4332 1222 46688998 999999999999999999888875 2356777776 677888666654
Q ss_pred c
Q 013316 394 E 394 (445)
Q Consensus 394 ~ 394 (445)
+
T Consensus 227 A 227 (346)
T KOG0989|consen 227 A 227 (346)
T ss_pred H
Confidence 3
No 103
>PRK15115 response regulator GlrR; Provisional
Probab=99.78 E-value=3.1e-19 Score=178.71 Aligned_cols=258 Identities=19% Similarity=0.202 Sum_probs=168.9
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHHhHHHHHH
Q 013316 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELEN 166 (445)
Q Consensus 87 tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~ 166 (445)
+|+.+.+..+..+.....+..|+. +++.++....++...+......... . . . ..
T Consensus 78 ~pvIvlt~~~~~~~~~~a~~~Ga~------------~~l~KP~~~~~L~~~l~~~~~~~~~----~----~---~---~~ 131 (444)
T PRK15115 78 MPVIILTAHGSIPDAVAATQQGVF------------SFLTKPVDRDALYKAIDDALEQSAP----A----T---D---ER 131 (444)
T ss_pred CcEEEEECCCCHHHHHHHHhcChh------------hhccCCCCHHHHHHHHHHHHHhhhc----c----c---c---cc
Confidence 344443444555556666677766 5666666655555554322111000 0 0 0 00
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.-..++|.+.....+.+....+ .....+++++|++|||||++|+++|+...+. ..+|+.++|
T Consensus 132 ~~~~lig~s~~~~~~~~~~~~~--------------a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~----~~~f~~i~c 193 (444)
T PRK15115 132 WREAIVTRSPLMLRLLEQARMV--------------AQSDVSVLINGQSGTGKEILAQAIHNASPRA----SKPFIAINC 193 (444)
T ss_pred hhhcccccCHHHHHHHHHHHhh--------------ccCCCeEEEEcCCcchHHHHHHHHHHhcCCC----CCCeEEEeC
Confidence 0124788887766665544332 3445689999999999999999999987653 349999999
Q ss_pred cccc-----ccccCCchh-------HHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-------
Q 013316 247 TDLV-----GEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------- 307 (445)
Q Consensus 247 ~~l~-----~~~~g~~~~-------~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------- 307 (445)
+.+. +.+||+... .....++.+.+|+|||||||.+.+ ..|..|+..++.+
T Consensus 194 ~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~-----------~~q~~L~~~l~~~~~~~~g~ 262 (444)
T PRK15115 194 GALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPA-----------PLQVKLLRVLQERKVRPLGS 262 (444)
T ss_pred CCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCH-----------HHHHHHHHHHhhCCEEeCCC
Confidence 8753 335554221 112357778889999999999987 7788898888764
Q ss_pred ------cEEEEEecCchhHHHHHh--hCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccH
Q 013316 308 ------KVVVIFAGYSEPMKRVIA--SNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSM 376 (445)
Q Consensus 308 ------~~~~i~a~~~~~~~~~~~--~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 376 (445)
++.+|++++.+....+.. ..+.|..|+. ..|.+|++. .+|+..++++++++.....+ +....+++
T Consensus 263 ~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~----~~~~~~~~ 338 (444)
T PRK15115 263 NRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHK----PFVRAFST 338 (444)
T ss_pred CceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhC----CCCCCcCH
Confidence 346777766554332211 1244555663 566777776 57899999999988654322 11235789
Q ss_pred HHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 377 DAIAALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 377 ~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
+++..+..+.| |||.|+|+++++++..
T Consensus 339 ~a~~~L~~~~W------pgNvreL~~~i~~~~~ 365 (444)
T PRK15115 339 DAMKRLMTASW------PGNVRQLVNVIEQCVA 365 (444)
T ss_pred HHHHHHHhCCC------CChHHHHHHHHHHHHH
Confidence 99999999988 9999999999999865
No 104
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.78 E-value=2.6e-19 Score=180.05 Aligned_cols=269 Identities=15% Similarity=0.147 Sum_probs=175.8
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHHhHHHHH
Q 013316 86 ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELE 165 (445)
Q Consensus 86 ~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~ 165 (445)
.+|+.+.+.....+.....++.|++ +++.++....++...+.............. ....... ..
T Consensus 76 ~~pvI~lt~~~~~~~~~~a~~~Ga~------------d~l~KP~~~~~L~~~i~~~l~~~~l~~~~~---~l~~~l~-~~ 139 (457)
T PRK11361 76 RTPVILMTAYAEVETAVEALRCGAF------------DYVIKPFDLDELNLIVQRALQLQSMKKEIR---HLHQALS-TS 139 (457)
T ss_pred CCCEEEEeCCCCHHHHHHHHHCCcc------------EEEecccCHHHHHHHHhhhccccccchhhh---hhhhhhh-cc
Confidence 3444444455666777777788877 666666555555544432211110000000 0000000 01
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
..+..++|.+.....+.+.+..+ +....+++++|++||||+++|+++|..+.. ..++|+.++
T Consensus 140 ~~~~~ii~~S~~~~~~~~~~~~~--------------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~----~~~~~~~i~ 201 (457)
T PRK11361 140 WQWGHILTNSPAMMDICKDTAKI--------------ALSQASVLISGESGTGKELIARAIHYNSRR----AKGPFIKVN 201 (457)
T ss_pred ccccceecccHHHhHHHHHHHHH--------------cCCCcEEEEEcCCCccHHHHHHHHHHhCCC----CCCCeEEEE
Confidence 12345888888877777655444 345678999999999999999999987654 345999999
Q ss_pred ccccc-----ccccCCchhH-------HHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc-----
Q 013316 246 RTDLV-----GEFVGHTGPK-------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK----- 308 (445)
Q Consensus 246 ~~~l~-----~~~~g~~~~~-------~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~----- 308 (445)
|+.+. +.+||+.... ....+..+.+|+||||||+.+.+ ..|..|+..++.+.
T Consensus 202 c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~-----------~~q~~L~~~l~~~~~~~~~ 270 (457)
T PRK11361 202 CAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPL-----------VLQAKLLRILQEREFERIG 270 (457)
T ss_pred CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCH-----------HHHHHHHHHHhcCcEEeCC
Confidence 98763 3456653211 12357778899999999999887 77888888887532
Q ss_pred --------EEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCccc
Q 013316 309 --------VVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCS 375 (445)
Q Consensus 309 --------~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~ 375 (445)
+.+|++++.+...... ...+.|..|+. ..|.+|++. .+|+..++++++.+.....+ .-...++
T Consensus 271 ~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~----~~~~~~~ 346 (457)
T PRK11361 271 GHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQ----RDIIDID 346 (457)
T ss_pred CCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcC----CCCCCcC
Confidence 5777777655433211 11344555663 667788877 68899999999998754322 1124678
Q ss_pred HHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 376 MDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 376 ~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
++++..+..+.| |||.|+|+++++++..
T Consensus 347 ~~a~~~L~~~~w------pgNv~eL~~~~~~~~~ 374 (457)
T PRK11361 347 PMAMSLLTAWSW------PGNIRELSNVIERAVV 374 (457)
T ss_pred HHHHHHHHcCCC------CCcHHHHHHHHHHHHH
Confidence 899999998888 9999999999999864
No 105
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.78 E-value=3.6e-19 Score=179.30 Aligned_cols=202 Identities=18% Similarity=0.212 Sum_probs=149.7
Q ss_pred hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316 170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 249 (445)
Q Consensus 170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l 249 (445)
.++|.++...++.+.+... .....++++.|++||||+++|+++|..... ...+|+.++|+.+
T Consensus 135 ~lig~s~~~~~v~~~i~~~--------------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~----~~~~~~~~~c~~~ 196 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRL--------------SRSDITVLINGESGTGKELVARALHRHSPR----ANGPFIALNMAAI 196 (463)
T ss_pred ceeecCHHHHHHHHHHHHH--------------hCcCCeEEEECCCCCCHHHHHHHHHHhCCC----CCCCeEEEeCCCC
Confidence 4889888888877755443 345668999999999999999999987654 3449999999875
Q ss_pred c-----ccccCCchhH-------HHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC----------
Q 013316 250 V-----GEFVGHTGPK-------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG---------- 307 (445)
Q Consensus 250 ~-----~~~~g~~~~~-------~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~---------- 307 (445)
. +.+||+.... ....+..+.+|+||||||+.+.. ..+..|+..++.+
T Consensus 197 ~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~-----------~~q~~ll~~l~~~~~~~~~~~~~ 265 (463)
T TIGR01818 197 PKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL-----------DAQTRLLRVLADGEFYRVGGRTP 265 (463)
T ss_pred CHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH-----------HHHHHHHHHHhcCcEEECCCCce
Confidence 3 3456653211 12346677899999999988876 7788888888754
Q ss_pred ---cEEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 308 ---KVVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 308 ---~~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
.+.+|++++.+...... ...+.|..|+. ..|++|++. .+|+..++++++.+.....+. -...++++++
T Consensus 266 ~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~----~~~~~~~~a~ 341 (463)
T TIGR01818 266 IKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDV----EPKLLDPEAL 341 (463)
T ss_pred eeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCC----CCCCcCHHHH
Confidence 34677777665443221 11245666775 588999998 899999999999887543321 1246889999
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNAREN 410 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~ 410 (445)
..+..+.| |||.|+|+++++++...
T Consensus 342 ~~L~~~~w------pgNvreL~~~~~~~~~~ 366 (463)
T TIGR01818 342 ERLKQLRW------PGNVRQLENLCRWLTVM 366 (463)
T ss_pred HHHHhCCC------CChHHHHHHHHHHHHHh
Confidence 99998888 99999999999998653
No 106
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=1.1e-17 Score=168.39 Aligned_cols=188 Identities=15% Similarity=0.202 Sum_probs=132.1
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------ 239 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~------ 239 (445)
+.|++++|++.+++.|++++.. ...+..+||+||+|||||++|+.+++.+.+.......
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~---------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDG---------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 4688999999999999886541 1234456999999999999999999999763211111
Q ss_pred -----------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316 240 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 301 (445)
Q Consensus 240 -----------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll 301 (445)
.+++++.++- ..-..++.+++.+ ++.|+||||+|.|.. ..++.||
T Consensus 78 sCr~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NALL 140 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNAML 140 (830)
T ss_pred HHHHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHHHH
Confidence 1333333211 1233456666543 458999999999976 6789999
Q ss_pred hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
+.|++ ..+.+|++|+.... + .+.+++|| ..+.|..++.+++.+.|+..+.+.. ..++.+++
T Consensus 141 KtLEEPP~~v~FILaTtd~~K--I---p~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~Eg-----------I~id~eAL 203 (830)
T PRK07003 141 KTLEEPPPHVKFILATTDPQK--I---PVTVLSRC-LQFNLKQMPAGHIVSHLERILGEER-----------IAFEPQAL 203 (830)
T ss_pred HHHHhcCCCeEEEEEECChhh--c---cchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 46777777665332 2 57899999 9999999999999999999887641 24566676
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
. ++.+.+ .|+.|...+++++++.
T Consensus 204 ~-lIA~~A------~GsmRdALsLLdQAia 226 (830)
T PRK07003 204 R-LLARAA------QGSMRDALSLTDQAIA 226 (830)
T ss_pred H-HHHHHc------CCCHHHHHHHHHHHHH
Confidence 6 555666 4455566667776643
No 107
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.78 E-value=4.4e-18 Score=174.18 Aligned_cols=222 Identities=21% Similarity=0.267 Sum_probs=146.9
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCC---CCCCeE
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---PTDRVT 242 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~---~~~~~~ 242 (445)
..|++++|++..+..+.+.+. ...+.+++|+||||||||++|+.++......... ...+|+
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia----------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVA----------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHh----------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 467889999998887654321 2346689999999999999999999887542211 245899
Q ss_pred Eeeccccc-------ccccCCchhH-----------------HHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHH
Q 013316 243 EVQRTDLV-------GEFVGHTGPK-----------------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALE 298 (445)
Q Consensus 243 ~~~~~~l~-------~~~~g~~~~~-----------------~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~ 298 (445)
.++++.+. ..++|..... ....+..+.+|+|||||++.+.+ ..+.
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~-----------~~Q~ 283 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP-----------LLQN 283 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH-----------HHHH
Confidence 99987642 1233321110 11234566789999999988876 5666
Q ss_pred HHHhhccCC------------------------------cEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHH
Q 013316 299 EIMSVMDGG------------------------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEEL 348 (445)
Q Consensus 299 ~ll~~~~~~------------------------------~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~ 348 (445)
.|+..++++ .+++|++|++++.. .+|+|++|| ..+.|++++.+|+
T Consensus 284 ~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~----l~~aLrSR~-~~i~~~pls~edi 358 (615)
T TIGR02903 284 KLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEE----INPALRSRC-AEVFFEPLTPEDI 358 (615)
T ss_pred HHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccc----cCHHHHhce-eEEEeCCCCHHHH
Confidence 777777543 25777777665432 378999999 5789999999999
Q ss_pred HHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhc
Q 013316 349 AKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTI 428 (445)
Q Consensus 349 ~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 428 (445)
.+|++.++.+.. ..++++++..+..+.| ++|...+.++.+......+.. ...+......|
T Consensus 359 ~~Il~~~a~~~~-----------v~ls~eal~~L~~ys~--------~gRraln~L~~~~~~~~~~~~-~~~~~~~~~~I 418 (615)
T TIGR02903 359 ALIVLNAAEKIN-----------VHLAAGVEELIARYTI--------EGRKAVNILADVYGYALYRAA-EAGKENDKVTI 418 (615)
T ss_pred HHHHHHHHHHcC-----------CCCCHHHHHHHHHCCC--------cHHHHHHHHHHHHHHHHHHHH-HhccCCCCeeE
Confidence 999999887531 2356666665544443 235556677666443322221 00122234689
Q ss_pred cHHHHHHHHHH
Q 013316 429 TLEDLEAGLKL 439 (445)
Q Consensus 429 ~~~d~~~a~~~ 439 (445)
+.+|+.++++.
T Consensus 419 ~~edv~~~l~~ 429 (615)
T TIGR02903 419 TQDDVYEVIQI 429 (615)
T ss_pred CHHHHHHHhCC
Confidence 99999998864
No 108
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.78 E-value=7.4e-19 Score=180.44 Aligned_cols=150 Identities=17% Similarity=0.146 Sum_probs=91.4
Q ss_pred CCccCccCCC-CCchHhHHHHHcCC--HHHHHHHHhhCCCCcCCCCCCCCChHHHHH-----------------------
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGD--LLAFQRLLRENPSLLNERNPVMAQTPLHVS----------------------- 55 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~--~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A----------------------- 55 (445)
+.|++++..+ .|.||||+|+..|+ .++++.|+ +.|+++|.++. .|+||||+|
T Consensus 200 e~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLL-e~GADVN~kD~-~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~ 277 (764)
T PHA02716 200 NNGVNVNLQNNHLITPLHTYLITGNVCASVIKKII-ELGGDMDMKCV-NGMSPIMTYIINIDNINPEITNIYIESLDGNK 277 (764)
T ss_pred HcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-HcCCCCCCCCC-CCCCHHHHHHHhhhccCHHHHHHHHHhccccc
Confidence 3566666654 46677777776664 35565554 35666776665 567777653
Q ss_pred --------------HhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHH--cCCHHHHHHHHhcCCCCcccccCCC
Q 013316 56 --------------AGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK--NGCNEAAKLLLAHGAFIEAKANEGK 119 (445)
Q Consensus 56 --------------~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~--~g~~~~~~~Ll~~ga~~~~~~~~g~ 119 (445)
+..|+.+++++|++. |++++.+|..|.||||+|+. .++.+++++|+++|++++.+|..|+
T Consensus 278 ~~~~~~~L~~~i~AA~~g~leiVklLLe~----GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~ 353 (764)
T PHA02716 278 VKNIPMILHSYITLARNIDISVVYSFLQP----GVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGN 353 (764)
T ss_pred cccchhhhHHHHHHHHcCCHHHHHHHHhC----CCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCC
Confidence 234556666666663 66666667777777776543 3456677777777777777777777
Q ss_pred Chhhhhhc-------------CCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316 120 TPLDHLSN-------------GPGSAKLRELLLWHSEEQRKRRALEACSET 157 (445)
Q Consensus 120 tpl~~~a~-------------~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~ 157 (445)
||||.++. ..++.+++++|+++|+++..++..+.++..
T Consensus 354 TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh 404 (764)
T PHA02716 354 TVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLT 404 (764)
T ss_pred CHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHH
Confidence 77732221 124566777777777666666555555543
No 109
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.77 E-value=2.2e-18 Score=153.92 Aligned_cols=138 Identities=16% Similarity=0.124 Sum_probs=116.0
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCC--cHHHHHHhhcCCCCCCccccccc-CCCCc
Q 013316 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQN-MYGET 87 (445)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~g~~v~~~d-~~g~t 87 (445)
..+++|||+|+..|+.+.|+.|+.. ++..+. .|.||||+|+..+ +.+++++|+++ |++++.++ .+|.|
T Consensus 19 ~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~-~g~TpLh~a~~~~~~~~eiv~~Ll~~----gadvn~~~~~~g~T 89 (209)
T PHA02859 19 YRYCNPLFYYVEKDDIEGVKKWIKF----VNDCND-LYETPIFSCLEKDKVNVEILKFLIEN----GADVNFKTRDNNLS 89 (209)
T ss_pred hccCcHHHHHHHhCcHHHHHHHHHh----hhccCc-cCCCHHHHHHHcCCCCHHHHHHHHHC----CCCCCccCCCCCCC
Confidence 3579999999999999999988853 566676 6999999999754 89999999995 89999987 58999
Q ss_pred HHHHHHHc---CCHHHHHHHHhcCCCCcccccCCCChhhhhhc-CCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316 88 PLHMAAKN---GCNEAAKLLLAHGAFIEAKANEGKTPLDHLSN-GPGSAKLRELLLWHSEEQRKRRALEACSET 157 (445)
Q Consensus 88 pLh~A~~~---g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~-~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~ 157 (445)
|||+|+.. ++.+++++|+++|++++.+|..|.||||+++. ..++.+++++|+.++++...++..+.++..
T Consensus 90 pLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh 163 (209)
T PHA02859 90 ALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILY 163 (209)
T ss_pred HHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHH
Confidence 99998764 47999999999999999999999999954433 356789999999999998777665555544
No 110
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.77 E-value=1.9e-18 Score=175.13 Aligned_cols=150 Identities=24% Similarity=0.279 Sum_probs=91.2
Q ss_pred CccCccCCC-CCchHhHHHHHcC--CHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccc
Q 013316 3 KNQDRRSRS-AKPATIHGCAQSG--DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79 (445)
Q Consensus 3 ~~~~~~~~~-~~~t~L~~A~~~g--~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~ 79 (445)
+|++.+..+ .|.||||+|+..| +.++++.|+. .|++++..+. .|.||||+|+..|+.+++++|+++ |++++
T Consensus 130 ~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~-~g~din~~d~-~g~tpL~~A~~~~~~~iv~~Ll~~----ga~~~ 203 (480)
T PHA03100 130 NGANVNIKNSDGENLLHLYLESNKIDLKILKLLID-KGVDINAKNR-YGYTPLHIAVEKGNIDVIKFLLDN----GADIN 203 (480)
T ss_pred cCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHH-CCCCcccccC-CCCCHHHHHHHhCCHHHHHHHHHc----CCCcc
Confidence 445554443 4556666666665 5555554443 3555555554 466666666666666666666653 55555
Q ss_pred cccCCC------CcHHHHHHHcCC--HHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhh
Q 013316 80 AQNMYG------ETPLHMAAKNGC--NEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRAL 151 (445)
Q Consensus 80 ~~d~~g------~tpLh~A~~~g~--~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~ 151 (445)
..+..| .||||+|+..++ .+++++|+++|++++.+|..|.||| |.|+..++.+++++|+..|+++..++..
T Consensus 204 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL-~~A~~~~~~~iv~~Ll~~gad~n~~d~~ 282 (480)
T PHA03100 204 AGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPL-HYAVYNNNPEFVKYLLDLGANPNLVNKY 282 (480)
T ss_pred CCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCccCCC
Confidence 555555 566666666666 6666666666677777777777777 5666666677777777777766666555
Q ss_pred hhhhhhHH
Q 013316 152 EACSETKA 159 (445)
Q Consensus 152 ~~~~~~~a 159 (445)
+.++...+
T Consensus 283 g~tpl~~A 290 (480)
T PHA03100 283 GDTPLHIA 290 (480)
T ss_pred CCcHHHHH
Confidence 55554433
No 111
>PHA02946 ankyin-like protein; Provisional
Probab=99.77 E-value=1.7e-18 Score=171.97 Aligned_cols=150 Identities=13% Similarity=0.093 Sum_probs=109.8
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCc--HHHHHHhhcCCCCCCccc
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK--AEIVKSLLEWPGNDKVEL 78 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~--~~iv~~Ll~~~~~~g~~v 78 (445)
++|++++..+ .|.||||+||..|+.++++.|+. +|+++|.++. .|+||||+|+..++ .+++++|+++ |+++
T Consensus 60 ~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~-~GAdin~~d~-~g~TpLh~A~~~~~~~~e~v~lLl~~----Gadi 133 (446)
T PHA02946 60 HRGYSPNETDDDGNYPLHIASKINNNRIVAMLLT-HGADPNACDK-QHKTPLYYLSGTDDEVIERINLLVQY----GAKI 133 (446)
T ss_pred HCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-CcCCCCCCCC-CCCCHHHHHHHcCCchHHHHHHHHHc----CCCc
Confidence 5678888766 58888888888888888887664 6788888886 78888888877653 6788888885 7777
Q ss_pred cc-ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhc-CCCChHHHHHHHhhhhhHHhhhhhhhhhh
Q 013316 79 EA-QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSN-GPGSAKLRELLLWHSEEQRKRRALEACSE 156 (445)
Q Consensus 79 ~~-~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~-~~~~~~i~~~ll~~~~~~~~~~~~~~~~~ 156 (445)
+. .|..|.|||| |+..++.+++++|++.|++++.+|..|+||||+++. .....+++++|+++|+++..++..+.++.
T Consensus 134 n~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpL 212 (446)
T PHA02946 134 NNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPL 212 (446)
T ss_pred ccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHH
Confidence 74 5777888886 555677888888888888888888888888843322 23345677788888777766655555554
Q ss_pred hH
Q 013316 157 TK 158 (445)
Q Consensus 157 ~~ 158 (445)
..
T Consensus 213 H~ 214 (446)
T PHA02946 213 HI 214 (446)
T ss_pred HH
Confidence 43
No 112
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.77 E-value=6.8e-19 Score=163.94 Aligned_cols=131 Identities=26% Similarity=0.356 Sum_probs=121.0
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~ 80 (445)
++|+++|... +..|||..||..|+++++++|+ .++++++..+. .|.|.||+||..||.+|+++|++. |+|+|.
T Consensus 105 ~~ga~VN~tT~TNStPLraACfDG~leivKyLv-E~gad~~Ianr-hGhTcLmIa~ykGh~~I~qyLle~----gADvn~ 178 (615)
T KOG0508|consen 105 RRGASVNDTTRTNSTPLRAACFDGHLEIVKYLV-EHGADPEIANR-HGHTCLMIACYKGHVDIAQYLLEQ----GADVNA 178 (615)
T ss_pred HhcCccccccccCCccHHHHHhcchhHHHHHHH-HcCCCCccccc-CCCeeEEeeeccCchHHHHHHHHh----CCCcch
Confidence 5678888776 5669999999999999999999 57899999998 799999999999999999999994 999999
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHh
Q 013316 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLW 140 (445)
Q Consensus 81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~ 140 (445)
++..|+|+||.|+..|+++++++|+.+|+.+. +|..|.||| ..|+..++.+++++|+.
T Consensus 179 ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~-~d~~GmtPL-~~Aa~tG~~~iVe~L~~ 236 (615)
T KOG0508|consen 179 KSYKGNTALHDCAESGSVDIVQLLLKHGAKID-VDGHGMTPL-LLAAVTGHTDIVERLLQ 236 (615)
T ss_pred hcccCchHHHhhhhcccHHHHHHHHhCCceee-ecCCCCchH-HHHhhhcchHHHHHHhc
Confidence 99999999999999999999999999999876 455699999 99999999999999986
No 113
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=2.6e-17 Score=162.76 Aligned_cols=187 Identities=20% Similarity=0.213 Sum_probs=128.8
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 237 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~-------- 237 (445)
..|++++|++.++..|...+.. ...+..+||+||||||||++|+++|+.+.......
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~---------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKK---------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 4678899999998888775431 22345689999999999999999999986532100
Q ss_pred ---------CCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316 238 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 301 (445)
Q Consensus 238 ---------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll 301 (445)
...+++++++.- ..-..++++.+.+ ...||||||+|.+.. ..++.|+
T Consensus 76 ~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-----------~a~~~LL 138 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-----------EAFNALL 138 (472)
T ss_pred HHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------HHHHHHH
Confidence 113444444321 1123344444332 347999999998865 6678889
Q ss_pred hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
..+++ +.+++|++++... . ..+++++|| ..+.|++++.+++..+++..+... ...++++++
T Consensus 139 k~LE~p~~~vv~Ilattn~~--k---l~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~e-----------gi~i~~eal 201 (472)
T PRK14962 139 KTLEEPPSHVVFVLATTNLE--K---VPPTIISRC-QVIEFRNISDELIIKRLQEVAEAE-----------GIEIDREAL 201 (472)
T ss_pred HHHHhCCCcEEEEEEeCChH--h---hhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHc-----------CCCCCHHHH
Confidence 98887 6777777766422 2 278899999 789999999999999999888653 124566777
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNAR 408 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~ 408 (445)
..+. ..+ .|+.|.+.+.++.+.
T Consensus 202 ~~Ia-~~s------~GdlR~aln~Le~l~ 223 (472)
T PRK14962 202 SFIA-KRA------SGGLRDALTMLEQVW 223 (472)
T ss_pred HHHH-HHh------CCCHHHHHHHHHHHH
Confidence 7554 444 355666677777653
No 114
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=2.2e-17 Score=164.29 Aligned_cols=187 Identities=16% Similarity=0.208 Sum_probs=131.3
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcC-----CCCCC-
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG-----ILPTD- 239 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~-----~~~~~- 239 (445)
+.|++|+|++.+++.|.+++..- +.+..+||+||+|||||++|+.+++.+.+.. .....
T Consensus 13 qtFddVIGQe~vv~~L~~al~~g---------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQ---------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhC---------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 46889999999999998865422 2344569999999999999999999997621 11111
Q ss_pred ----------------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHH
Q 013316 240 ----------------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEA 296 (445)
Q Consensus 240 ----------------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~ 296 (445)
.+++++.++- ..-..++++++.. +..|+||||+|.+.. ..
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas~------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~-----------~A 140 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASN------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN-----------HA 140 (700)
T ss_pred CcccHHHHHHHcCCCCcceEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------HH
Confidence 2333333211 1234455555442 347999999999976 77
Q ss_pred HHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcc
Q 013316 297 LEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC 374 (445)
Q Consensus 297 ~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~ 374 (445)
+|.||+.|++ +.+++|++|+..... .+.+++|| ..+.|+.++.+++.+.+...+.+.. ..+
T Consensus 141 aNALLKTLEEPP~~v~FILaTtep~kL-----lpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Eg-----------i~~ 203 (700)
T PRK12323 141 FNAMLKTLEEPPEHVKFILATTDPQKI-----PVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEG-----------IAH 203 (700)
T ss_pred HHHHHHhhccCCCCceEEEEeCChHhh-----hhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcC-----------CCC
Confidence 8999999997 667788877654322 57899999 9999999999999999998887531 234
Q ss_pred cHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316 375 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNAR 408 (445)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~ 408 (445)
+++++. ++...+ .|+.|...+++++++
T Consensus 204 d~eAL~-~IA~~A------~Gs~RdALsLLdQai 230 (700)
T PRK12323 204 EVNALR-LLAQAA------QGSMRDALSLTDQAI 230 (700)
T ss_pred CHHHHH-HHHHHc------CCCHHHHHHHHHHHH
Confidence 556665 555666 455566666666653
No 115
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.76 E-value=2.5e-18 Score=176.59 Aligned_cols=151 Identities=17% Similarity=0.142 Sum_probs=127.4
Q ss_pred CCc-cCccCC-C-CCchHhHHHHH--cCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCc--HHHHHHhhcCCCCC
Q 013316 2 QKN-QDRRSR-S-AKPATIHGCAQ--SGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK--AEIVKSLLEWPGND 74 (445)
Q Consensus 2 ~~~-~~~~~~-~-~~~t~L~~A~~--~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~--~~iv~~Ll~~~~~~ 74 (445)
+.| ++++.. + .|.||||+|+. +++.++++.|+ +.|+++|..+. .|+||||+|+..|+ .++|++|+++
T Consensus 163 e~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLL-e~GADVN~kD~-~G~TPLH~Aa~~g~~~~eIVklLLe~---- 236 (764)
T PHA02716 163 DVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLC-NNGVNVNLQNN-HLITPLHTYLITGNVCASVIKKIIEL---- 236 (764)
T ss_pred HCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHH-HcCCCCCCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHc----
Confidence 567 888875 3 69999999875 46788998777 46899999997 79999999999995 5899999995
Q ss_pred CcccccccCCCCcHHHHH-------------------------------------HHcCCHHHHHHHHhcCCCCcccccC
Q 013316 75 KVELEAQNMYGETPLHMA-------------------------------------AKNGCNEAAKLLLAHGAFIEAKANE 117 (445)
Q Consensus 75 g~~v~~~d~~g~tpLh~A-------------------------------------~~~g~~~~~~~Ll~~ga~~~~~~~~ 117 (445)
|+++|.+|..|.||||+| +..|+.+++++|+++|++++.+|..
T Consensus 237 GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~ 316 (764)
T PHA02716 237 GGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSA 316 (764)
T ss_pred CCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCC
Confidence 899999999999999975 4457889999999999999999999
Q ss_pred CCChhhhhhc-CCCChHHHHHHHhhhhhHHhhhhhhhhhhhH
Q 013316 118 GKTPLDHLSN-GPGSAKLRELLLWHSEEQRKRRALEACSETK 158 (445)
Q Consensus 118 g~tpl~~~a~-~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~ 158 (445)
|+||||+++. ..++.+++++|+++|++...++..+.++...
T Consensus 317 G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~ 358 (764)
T PHA02716 317 GRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHT 358 (764)
T ss_pred CCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHH
Confidence 9999954433 4567899999999999988877766666553
No 116
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.76 E-value=3.1e-18 Score=173.49 Aligned_cols=140 Identities=30% Similarity=0.416 Sum_probs=127.3
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCC------ChHHHHHHhCCc--HHHHHHhhcCCC
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMA------QTPLHVSAGYNK--AEIVKSLLEWPG 72 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g------~tpLh~A~~~g~--~~iv~~Ll~~~~ 72 (445)
+.|++++..+ .|.||||+|+..|+.++++.|+. .|++++..+. .| .||||+|+..++ .+++++|+++
T Consensus 164 ~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~-~ga~~~~~~~-~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~-- 239 (480)
T PHA03100 164 DKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLD-NGADINAGDI-ETLLFTIFETPLHIAACYNEITLEVVNYLLSY-- 239 (480)
T ss_pred HCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHH-cCCCccCCCC-CCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc--
Confidence 5788887766 69999999999999999987775 6888988876 57 899999999999 9999999995
Q ss_pred CCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhh
Q 013316 73 NDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 148 (445)
Q Consensus 73 ~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~ 148 (445)
|++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||+ +.|...++.+++++|+++|++....
T Consensus 240 --g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl-~~A~~~~~~~iv~~Ll~~g~~i~~i 312 (480)
T PHA03100 240 --GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPL-HIAILNNNKEIFKLLLNNGPSIKTI 312 (480)
T ss_pred --CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHH-HHHHHhCCHHHHHHHHhcCCCHHHH
Confidence 899999999999999999999999999999999999999999999999 7888889999999999999875543
No 117
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.76 E-value=9.5e-19 Score=148.95 Aligned_cols=129 Identities=24% Similarity=0.326 Sum_probs=104.7
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhh----CCCCcCCCCCCCCChHHHHHHhCCcH---HHHHHhhcCCCCCCccccccc-
Q 013316 11 SAKPATIHGCAQSGDLLAFQRLLRE----NPSLLNERNPVMAQTPLHVSAGYNKA---EIVKSLLEWPGNDKVELEAQN- 82 (445)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~----~~~~~~~~~~~~g~tpLh~A~~~g~~---~iv~~Ll~~~~~~g~~v~~~d- 82 (445)
..|.||||+||..|+...+..+... .+..++..+. .|+||||+|+..|+. +++++|+++ |++++.++
T Consensus 15 ~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~-~g~t~Lh~a~~~~~~~~~e~v~~Ll~~----gadin~~~~ 89 (154)
T PHA02736 15 IEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNR-HGKQCVHIVSNPDKADPQEKLKLLMEW----GADINGKER 89 (154)
T ss_pred CCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcC-CCCEEEEeecccCchhHHHHHHHHHHc----CCCccccCC
Confidence 3699999999999985332211110 0112334565 699999999999986 468889985 88999998
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHh-cCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhH
Q 013316 83 MYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQ 145 (445)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~ 145 (445)
..|.||||+|+..++.+++++|+. .|++++.+|..|.||| |+|...++.+++++|+..+++.
T Consensus 90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL-~~A~~~~~~~i~~~Ll~~ga~~ 152 (154)
T PHA02736 90 VFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPY-YVACERHDAKMMNILRAKGAQC 152 (154)
T ss_pred CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHH-HHHHHcCCHHHHHHHHHcCCCC
Confidence 489999999999999999999997 5999999999999999 7888889999999999888653
No 118
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.76 E-value=1.5e-18 Score=143.76 Aligned_cols=122 Identities=27% Similarity=0.479 Sum_probs=101.6
Q ss_pred eEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc---c-CcEEEEcCccccccC
Q 013316 209 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---E-GGILFVDEAYRLIPM 284 (445)
Q Consensus 209 vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a---~-~~il~lDEid~l~~~ 284 (445)
|||+||||||||++|+.+++.++. +++.++++.+.+.+.+.+...+.+.|..+ . ++||||||+|.+.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-------~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~ 73 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-------PFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPK 73 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-------EEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHH
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-------ccccccccccccccccccccccccccccccccccceeeeeccchhcccc
Confidence 689999999999999999999875 89999999999888998999999998876 3 699999999999987
Q ss_pred CCCCCchhHHHHHHHHHhhccC-----CcEEEEEecCchhHHHHHhhCcccc-cccccceeCCC
Q 013316 285 QKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYSEPMKRVIASNEGFC-RRVTKFFHFND 342 (445)
Q Consensus 285 ~~~~~~~~~~~~~~~ll~~~~~-----~~~~~i~a~~~~~~~~~~~~~~~l~-~R~~~~i~~~~ 342 (445)
.+..........++.|+..++. .++++|++++.... .+|+++ +||+..|+||.
T Consensus 74 ~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~-----i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 74 SQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDK-----IDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp CSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGG-----SCHHHHSTTSEEEEEE-S
T ss_pred cccccccccccccceeeecccccccccccceeEEeeCChhh-----CCHhHHhCCCcEEEEcCC
Confidence 7444566677888888888875 34788888776222 389999 99999999873
No 119
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.76 E-value=1.1e-17 Score=177.36 Aligned_cols=173 Identities=20% Similarity=0.262 Sum_probs=136.3
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHH---cCCCCCCCeEE
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM---VGILPTDRVTE 243 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~---~~~~~~~~~~~ 243 (445)
.++.++|++...+++.+.+. .....+++|+||||||||++|+.+++.+.. +..+...+++.
T Consensus 176 ~l~~vigr~~ei~~~i~iL~----------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQ----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHh----------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 45679999986655555321 335568999999999999999999998843 11233457888
Q ss_pred eeccccc--ccccCCchhHHHHHHHHc----cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316 244 VQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 317 (445)
Q Consensus 244 ~~~~~l~--~~~~g~~~~~~~~~~~~a----~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~ 317 (445)
++.+.+. .+|.|+.+..++++|++. .+.||||||||.+.+.+.+++ ..++.+.|...+.++.+.+|++||.
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~---~~d~~~~lkp~l~~g~l~~IgaTt~ 316 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG---AMDAGNMLKPALARGELHCVGATTL 316 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc---chhHHHHhcchhhcCCCeEEEcCCC
Confidence 8888765 457888888899988763 347999999999987654322 2356777888999999999999999
Q ss_pred hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcc
Q 013316 318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 359 (445)
Q Consensus 318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~ 359 (445)
+++...+..|++|++||. .|.++.|+.+++..|++....+.
T Consensus 317 ~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 317 DEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred HHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 999888888999999994 78899999999999998766544
No 120
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.76 E-value=1.5e-17 Score=177.18 Aligned_cols=174 Identities=20% Similarity=0.269 Sum_probs=135.8
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHc---CCCCCCCeEE
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTE 243 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~---~~~~~~~~~~ 243 (445)
.++.++|+++..+++.+.+. .....+++|+||||||||++|+.+++.+... ..+...+++.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~----------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLS----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHh----------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 45669999987665555321 3456789999999999999999999987431 1223447788
Q ss_pred eeccccc--ccccCCchhHHHHHHHHc----cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316 244 VQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 317 (445)
Q Consensus 244 ~~~~~l~--~~~~g~~~~~~~~~~~~a----~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~ 317 (445)
++.+.+. ..|.|+.+..+..+|++. .+.||||||||.+.+.+.+.+ ..++.+.|...+.++.+.+|++||.
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~---~~d~~~~Lk~~l~~g~i~~IgaTt~ 311 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG---AMDAGNMLKPALARGELHCIGATTL 311 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc---hhHHHHHhchhhhcCceEEEEeCcH
Confidence 8877765 457888888888888765 358999999999987543221 2356677888888999999999999
Q ss_pred hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhccc
Q 013316 318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQT 360 (445)
Q Consensus 318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~ 360 (445)
+++..++..||++.+|| ..|.++.|+.+++..|++.+..++.
T Consensus 312 ~e~r~~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~~e 353 (852)
T TIGR03346 312 DEYRKYIEKDAALERRF-QPVFVDEPTVEDTISILRGLKERYE 353 (852)
T ss_pred HHHHHHhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHhc
Confidence 99988888899999999 5789999999999999998766653
No 121
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.75 E-value=2.1e-18 Score=170.50 Aligned_cols=133 Identities=29% Similarity=0.436 Sum_probs=120.3
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 013316 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (445)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpL 89 (445)
.+.|.||||+||+.|+.+.+..|+ ..|++++.++. ++.||||.||.+|+...|+-||+-. ....+|..|..|.|||
T Consensus 270 d~dg~tpLH~a~r~G~~~svd~Ll-~~Ga~I~~kn~-d~~spLH~AA~yg~~ntv~rLL~~~--~~rllne~D~~g~tpL 345 (929)
T KOG0510|consen 270 DNDGCTPLHYAARQGGPESVDNLL-GFGASINSKNK-DEESPLHFAAIYGRINTVERLLQES--DTRLLNESDLHGMTPL 345 (929)
T ss_pred cccCCchHHHHHHcCChhHHHHHH-HcCCcccccCC-CCCCchHHHHHcccHHHHHHHHhCc--CccccccccccCCCch
Confidence 457999999999999999998777 57899999997 8999999999999999999999831 3456789999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCc---ccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHh
Q 013316 90 HMAAKNGCNEAAKLLLAHGAFIE---AKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 147 (445)
Q Consensus 90 h~A~~~g~~~~~~~Ll~~ga~~~---~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~ 147 (445)
|+|++.|+..+++.|++.||... ..|.+|+||| |.|+..++..++++|+++|++...
T Consensus 346 Hlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaL-H~Aa~~g~~~av~~Li~~Ga~I~~ 405 (929)
T KOG0510|consen 346 HLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTAL-HLAAKYGNTSAVQKLISHGADIGV 405 (929)
T ss_pred hhhhhcCHHHHHHHHHhcChhhhcccccccCCchhh-hHHHHhccHHHHHHHHHcCCceee
Confidence 99999999999999999999987 5699999999 889999999999999999998744
No 122
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=4.6e-17 Score=162.44 Aligned_cols=188 Identities=18% Similarity=0.220 Sum_probs=132.4
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------ 239 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~------ 239 (445)
..|++++|++.+++.|..++.. ...+..+||+||||||||++|+++|+.+.+.......
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~---------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALER---------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 4688999999999999886542 2335567999999999999999999998763211111
Q ss_pred -----------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316 240 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 301 (445)
Q Consensus 240 -----------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll 301 (445)
.+++++.++- ..-..++.+++.+ ++.|+||||+|.+.+ ..++.|+
T Consensus 77 sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-----------~A~NALL 139 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-----------HSFNALL 139 (702)
T ss_pred HHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-----------HHHHHHH
Confidence 2333333221 1234456655443 357999999999986 6778899
Q ss_pred hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
+.+++ +.+.+|++++..... .+.+++|| ..+.|.+++.+++...+...+.+.. ..++.+++
T Consensus 140 KtLEEPP~~v~FILaTtd~~kI-----p~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEg-----------I~id~eAL 202 (702)
T PRK14960 140 KTLEEPPEHVKFLFATTDPQKL-----PITVISRC-LQFTLRPLAVDEITKHLGAILEKEQ-----------IAADQDAI 202 (702)
T ss_pred HHHhcCCCCcEEEEEECChHhh-----hHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 566777776543322 46788998 9999999999999999999887642 24566777
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
. .+...+ .|+.|.+.+++++++.
T Consensus 203 ~-~IA~~S------~GdLRdALnLLDQaIa 225 (702)
T PRK14960 203 W-QIAESA------QGSLRDALSLTDQAIA 225 (702)
T ss_pred H-HHHHHc------CCCHHHHHHHHHHHHH
Confidence 6 444555 4556666677777643
No 123
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=5.2e-17 Score=159.76 Aligned_cols=188 Identities=17% Similarity=0.195 Sum_probs=135.6
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCC---------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--------- 236 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~--------- 236 (445)
..|++++|++.+++.|...+.. ...+.++||+||||||||++|+.+|+.+.+....
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~---------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTL---------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 4688999999999888875431 2345679999999999999999999988653211
Q ss_pred --------CCCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316 237 --------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 301 (445)
Q Consensus 237 --------~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll 301 (445)
....++++++++-. +-..++.+++.+ ++.|++|||+|.+.. ..++.|+
T Consensus 75 ~C~~i~~~~~~Dv~eidaas~~------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~NaLL 137 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAASNT------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNALL 137 (491)
T ss_pred HHHHHhccCCCCEEEEecccCC------CHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHHHH
Confidence 12245555554211 234566666554 458999999999976 6789999
Q ss_pred hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
+.+++ ..+++|++++.... + .+.+++|+ ..+.|.+++.+++...+...+.+.. ..++++++
T Consensus 138 K~LEePp~~v~fIlatte~~K--l---~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Eg-----------i~i~~eAL 200 (491)
T PRK14964 138 KTLEEPAPHVKFILATTEVKK--I---PVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKEN-----------IEHDEESL 200 (491)
T ss_pred HHHhCCCCCeEEEEEeCChHH--H---HHHHHHhh-eeeecccccHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 56777777654322 2 46789998 8899999999999999999887642 24667787
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
. ++...+ .|+.|.+.+.+++++.
T Consensus 201 ~-lIa~~s------~GslR~alslLdqli~ 223 (491)
T PRK14964 201 K-LIAENS------SGSMRNALFLLEQAAI 223 (491)
T ss_pred H-HHHHHc------CCCHHHHHHHHHHHHH
Confidence 7 444555 4566777778887743
No 124
>PHA02795 ankyrin-like protein; Provisional
Probab=99.75 E-value=6.4e-18 Score=162.78 Aligned_cols=137 Identities=18% Similarity=0.093 Sum_probs=86.9
Q ss_pred CCccCccCCCCCchHhHHHHHcCCHHHHHHHHhhCCC-CcCCCCC----CCCChHHHHHHhCCcHHHHHHhhcCCCCCCc
Q 013316 2 QKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPS-LLNERNP----VMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76 (445)
Q Consensus 2 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~----~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~ 76 (445)
+.||+.+.. .+.||||+|+..|+.++++.|+.. |+ +.+..+. ..+.+++|.|+..++.+++++|+.+ |+
T Consensus 139 ~~GADIn~~-~~~t~lh~A~~~~~~eIVk~Lls~-Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~----GA 212 (437)
T PHA02795 139 DHGAVIYKI-ECLNAYFRGICKKESSVVEFILNC-GIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPY----IE 212 (437)
T ss_pred HCCCCCCCC-CCCCHHHHHHHcCcHHHHHHHHhc-CCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhC----cC
Confidence 456666652 346677777777777666655543 43 2222210 1255666777777777777777764 66
Q ss_pred ccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCC--------ChHHHHHHHhhhhhH
Q 013316 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPG--------SAKLRELLLWHSEEQ 145 (445)
Q Consensus 77 ~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~--------~~~i~~~ll~~~~~~ 145 (445)
++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||| |.|...+ +.+++++|++++++.
T Consensus 213 DIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpL-h~Aa~~g~~~~~~~~~~eIvelLL~~gadI 288 (437)
T PHA02795 213 DINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCL-DVAVDRGSVIARRETHLKILEILLREPLSI 288 (437)
T ss_pred CcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH-HHHHHcCCcccccccHHHHHHHHHhCCCCC
Confidence 7777777777777777777777777777777777777777777777 4444443 346777777666543
No 125
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.75 E-value=5.4e-18 Score=181.18 Aligned_cols=142 Identities=18% Similarity=0.197 Sum_probs=103.8
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~ 80 (445)
+.|++++..+ .|.||||+||..|+.++++.|+. +|+++|.+|. .|+||||+|+..||.+++++|++. ++..+
T Consensus 546 ~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~-~gadin~~d~-~G~TpL~~A~~~g~~~iv~~L~~~----~~~~~- 618 (823)
T PLN03192 546 KAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLK-HACNVHIRDA-NGNTALWNAISAKHHKIFRILYHF----ASISD- 618 (823)
T ss_pred HCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHh-cCCCCCCcCC-CCCCHHHHHHHhCCHHHHHHHHhc----CcccC-
Confidence 3556666655 46677777777777666665554 4666666665 566777777777777777766653 22222
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhh
Q 013316 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALE 152 (445)
Q Consensus 81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~ 152 (445)
...|.++||+|+..|+.+++++|+++|++++.+|.+|+||| |+|+..++.+++++|+.+|++....+..+
T Consensus 619 -~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpL-h~A~~~g~~~iv~~Ll~~GAdv~~~~~~g 688 (823)
T PLN03192 619 -PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATAL-QVAMAEDHVDMVRLLIMNGADVDKANTDD 688 (823)
T ss_pred -cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHCCcHHHHHHHHHcCCCCCCCCCCC
Confidence 23355677788888888899999999999999999999999 88888999999999999999877766443
No 126
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=6e-17 Score=161.82 Aligned_cols=187 Identities=15% Similarity=0.185 Sum_probs=132.7
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------ 239 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~------ 239 (445)
..|++++|++.+++.|..++.. ...+..+||+||||||||++|+++|+.+.+.......
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~---------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQ---------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh---------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 4688999999999999987642 2234457999999999999999999999764322111
Q ss_pred -----------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316 240 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 301 (445)
Q Consensus 240 -----------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll 301 (445)
.+++++.++- ..-..++.+++.. ++.|+||||+|.+.+ ..++.|+
T Consensus 78 ~C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~-----------~a~naLL 140 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG-----------HSFNALL 140 (509)
T ss_pred HHHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH-----------HHHHHHH
Confidence 1444444321 1233456655443 347999999999986 6788999
Q ss_pred hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
+.|++ ..+++|++|+... .+ -+.+++|+ ..++|.+++.+++...+...+++.. ..++++++
T Consensus 141 k~LEepp~~~~fIlattd~~--kl---~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~eg-----------i~~~~~al 203 (509)
T PRK14958 141 KTLEEPPSHVKFILATTDHH--KL---PVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEEN-----------VEFENAAL 203 (509)
T ss_pred HHHhccCCCeEEEEEECChH--hc---hHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 4677777765432 22 45689998 8999999999999999998888642 23566676
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNAR 408 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~ 408 (445)
.. +...+ .|+.|.+.+++++++
T Consensus 204 ~~-ia~~s------~GslR~al~lLdq~i 225 (509)
T PRK14958 204 DL-LARAA------NGSVRDALSLLDQSI 225 (509)
T ss_pred HH-HHHHc------CCcHHHHHHHHHHHH
Confidence 64 44555 455667777887764
No 127
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.75 E-value=2.7e-18 Score=171.92 Aligned_cols=201 Identities=19% Similarity=0.201 Sum_probs=144.5
Q ss_pred hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316 170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 249 (445)
Q Consensus 170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l 249 (445)
.++|.+.....+.+.+.++ .....+++++|++||||+++|++++..+.+. ..+|+.++|+.+
T Consensus 140 ~lig~s~~~~~~~~~i~~~--------------~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~----~~~~i~~~c~~~ 201 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALV--------------APSEATVLIHGDSGTGKELVARAIHASSARS----EKPLVTLNCAAL 201 (441)
T ss_pred ceEecCHHHHHHHHHHhhc--------------cCCCCeEEEEecCCCCHHHHHHHHHHcCCCC----CCCeeeeeCCCC
Confidence 3677777766665544332 3456789999999999999999999877652 349999999875
Q ss_pred c-----ccccCCchhH-------HHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc---------
Q 013316 250 V-----GEFVGHTGPK-------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--------- 308 (445)
Q Consensus 250 ~-----~~~~g~~~~~-------~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~--------- 308 (445)
. +.++|+.... ....+..+.+|+|||||||.+.+ ..|..|+..++.+.
T Consensus 202 ~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~-----------~~q~~l~~~l~~~~~~~~~~~~~ 270 (441)
T PRK10365 202 NESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP-----------MMQVRLLRAIQEREVQRVGSNQT 270 (441)
T ss_pred CHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCH-----------HHHHHHHHHHccCcEEeCCCCce
Confidence 3 3345642211 12356778899999999999987 77888888887643
Q ss_pred ----EEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 309 ----VVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 309 ----~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
+.+|++++.+....+. ...+.|..|+. ..|.+|++. .+|+..++++++++.....+ +....++++++
T Consensus 271 ~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~----~~~~~~~~~a~ 346 (441)
T PRK10365 271 ISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNR----KAVKGFTPQAM 346 (441)
T ss_pred eeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhC----CCCCCcCHHHH
Confidence 4577787776554331 11234445663 567778877 57999999999988654322 11235788999
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
..+..+.| |||.|+|+++++++..
T Consensus 347 ~~L~~~~w------pgN~reL~~~~~~~~~ 370 (441)
T PRK10365 347 DLLIHYDW------PGNIRELENAVERAVV 370 (441)
T ss_pred HHHHhCCC------CCHHHHHHHHHHHHHH
Confidence 99998888 9999999999999865
No 128
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=6e-17 Score=160.68 Aligned_cols=188 Identities=19% Similarity=0.266 Sum_probs=134.2
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC-------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 238 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~------- 238 (445)
..|++++|++.+++.|...+.. ...+.++||+||||||||++|+++|+.+.+......
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~---------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILN---------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 4678899999999888874431 234678999999999999999999999976422111
Q ss_pred --------------CCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHH
Q 013316 239 --------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEAL 297 (445)
Q Consensus 239 --------------~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~ 297 (445)
..++++++++ ..+...++.+++.+ ++.|+||||+|.+.. ..+
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~ 145 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAF 145 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHH
Confidence 1222222211 01334566666655 357999999999875 678
Q ss_pred HHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCccc
Q 013316 298 EEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCS 375 (445)
Q Consensus 298 ~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~ 375 (445)
+.|++.+++ ..+++|++|+.... + .+.+++|+ ..++|++++.+++..+++..+++.. ..++
T Consensus 146 naLLk~LEepp~~~vfI~aTte~~k--I---~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~eg-----------i~ie 208 (507)
T PRK06645 146 NALLKTLEEPPPHIIFIFATTEVQK--I---PATIISRC-QRYDLRRLSFEEIFKLLEYITKQEN-----------LKTD 208 (507)
T ss_pred HHHHHHHhhcCCCEEEEEEeCChHH--h---hHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcC-----------CCCC
Confidence 889998886 56677777654332 2 57789998 8899999999999999999988642 2456
Q ss_pred HHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 376 MDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 376 ~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
++++.. +...+ .|+.|.+.+.+++++.
T Consensus 209 ~eAL~~-Ia~~s------~GslR~al~~Ldkai~ 235 (507)
T PRK06645 209 IEALRI-IAYKS------EGSARDAVSILDQAAS 235 (507)
T ss_pred HHHHHH-HHHHc------CCCHHHHHHHHHHHHH
Confidence 677764 44444 5677788888888744
No 129
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.75 E-value=1e-17 Score=169.69 Aligned_cols=152 Identities=21% Similarity=0.220 Sum_probs=109.2
Q ss_pred CCccCccCCC-CCchHhHHHHHc---CCHHHHHHHHhhCCCCc-CCCCCCCCChHHHHHHhC--CcHHHHHHhhcCCCCC
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQS---GDLLAFQRLLRENPSLL-NERNPVMAQTPLHVSAGY--NKAEIVKSLLEWPGND 74 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~---g~~~~v~~ll~~~~~~~-~~~~~~~g~tpLh~A~~~--g~~~iv~~Ll~~~~~~ 74 (445)
+.|++++..+ .|.||||.|+.. |+.++++.|+. .|+++ +..+. .|+||||+|+.. ++.+++++|+++
T Consensus 96 ~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~-~Gadin~~~d~-~g~tpLh~a~~~~~~~~~iv~~Ll~~---- 169 (494)
T PHA02989 96 KFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLS-KGINVNDVKNS-RGYNLLHMYLESFSVKKDVIKILLSF---- 169 (494)
T ss_pred HCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHH-CCCCcccccCC-CCCCHHHHHHHhccCCHHHHHHHHHc----
Confidence 5677777766 578888877654 56777776664 57777 56665 688888887643 567888888874
Q ss_pred Cccccc-ccCCCCcHHHHHHHcC----CHHHHHHHHhcCCCCcc------------------------------------
Q 013316 75 KVELEA-QNMYGETPLHMAAKNG----CNEAAKLLLAHGAFIEA------------------------------------ 113 (445)
Q Consensus 75 g~~v~~-~d~~g~tpLh~A~~~g----~~~~~~~Ll~~ga~~~~------------------------------------ 113 (445)
|++++. .+.+|.||||+|+..+ +.+++++|++.|++++.
T Consensus 170 Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~adv 249 (494)
T PHA02989 170 GVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKI 249 (494)
T ss_pred CCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCC
Confidence 777776 5677888888876553 77888888877776543
Q ss_pred --cccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHHh
Q 013316 114 --KANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAK 160 (445)
Q Consensus 114 --~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a~ 160 (445)
+|..|+||| |+|+..++.+++++|+++|+++..++..+.++...+.
T Consensus 250 n~~d~~G~TpL-~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~ 297 (494)
T PHA02989 250 NKKDKKGFNPL-LISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAI 297 (494)
T ss_pred CCCCCCCCCHH-HHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 344578888 6677777888888888888888777766666665543
No 130
>PHA03095 ankyrin-like protein; Provisional
Probab=99.74 E-value=9.3e-18 Score=169.65 Aligned_cols=148 Identities=23% Similarity=0.205 Sum_probs=125.6
Q ss_pred CCccCccCCC-CCchHhHHHHHcC---CHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCC-cHHHHHHhhcCCCCCCc
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSG---DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN-KAEIVKSLLEWPGNDKV 76 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g-~~~iv~~Ll~~~~~~g~ 76 (445)
+.|++++..+ .|.||||+|+..| +.++++.|+ +.|+++|..+. .|+||||+|+..| +.+++++|+++ |+
T Consensus 35 ~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll-~~Gadin~~~~-~g~TpLh~A~~~~~~~~iv~lLl~~----ga 108 (471)
T PHA03095 35 AAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLL-EAGADVNAPER-CGFTPLHLYLYNATTLDVIKLLIKA----GA 108 (471)
T ss_pred HcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHH-HCCCCCCCCCC-CCCCHHHHHHHcCCcHHHHHHHHHc----CC
Confidence 5788888877 5899999999998 898888777 57899999997 7999999999999 59999999995 89
Q ss_pred ccccccCCCCcHHHHHH--HcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcC-CCChHHHHHHHhhhhhHHhhhhhhh
Q 013316 77 ELEAQNMYGETPLHMAA--KNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNG-PGSAKLRELLLWHSEEQRKRRALEA 153 (445)
Q Consensus 77 ~v~~~d~~g~tpLh~A~--~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~-~~~~~i~~~ll~~~~~~~~~~~~~~ 153 (445)
+++.+|..|.||||+|+ ..++.+++++|+++|++++.+|..|.||||.+... ....+++++|++++++....+..+.
T Consensus 109 ~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~ 188 (471)
T PHA03095 109 DVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFR 188 (471)
T ss_pred CCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCC
Confidence 99999999999999999 55688999999999999999999999999443333 3367899999999887665544333
Q ss_pred hh
Q 013316 154 CS 155 (445)
Q Consensus 154 ~~ 155 (445)
++
T Consensus 189 t~ 190 (471)
T PHA03095 189 SL 190 (471)
T ss_pred CH
Confidence 33
No 131
>PHA02798 ankyrin-like protein; Provisional
Probab=99.74 E-value=1.6e-17 Score=168.09 Aligned_cols=46 Identities=22% Similarity=0.088 Sum_probs=32.8
Q ss_pred cccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHHh
Q 013316 114 KANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAK 160 (445)
Q Consensus 114 ~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a~ 160 (445)
+|..|+||| |.|+..++.+++++|+..|+++...+..+.++...+.
T Consensus 254 ~d~~G~TPL-~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~ 299 (489)
T PHA02798 254 VDELGFNPL-YYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAF 299 (489)
T ss_pred cCcCCccHH-HHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHH
Confidence 445577887 6666777778888888888887777766666665553
No 132
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.8e-17 Score=152.93 Aligned_cols=171 Identities=23% Similarity=0.248 Sum_probs=120.8
Q ss_pred HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 013316 168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 247 (445)
Q Consensus 168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~ 247 (445)
|+.+|-.-+...+|.++......- +....+-.+|+||||||||||++||-||..++....++++.-+..
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNT--------K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP--- 422 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATANT--------KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP--- 422 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhccc--------ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc---
Confidence 556777777778888765543211 122345679999999999999999999998876443333321111
Q ss_pred cccccccC-CchhHHHHHHHHc----cCcEEEEcCccccccCCCCC-CchhHHHHHHHHHhhc--cCCcEEEEEecCchh
Q 013316 248 DLVGEFVG-HTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKAD-DKDYGIEALEEIMSVM--DGGKVVVIFAGYSEP 319 (445)
Q Consensus 248 ~l~~~~~g-~~~~~~~~~~~~a----~~~il~lDEid~l~~~~~~~-~~~~~~~~~~~ll~~~--~~~~~~~i~a~~~~~ 319 (445)
+ | +....+.++|+=+ +|-+|||||+|.+...|... -.+..+.++|.||--- ++.+++++++|+...
T Consensus 423 -l-----G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg 496 (630)
T KOG0742|consen 423 -L-----GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 496 (630)
T ss_pred -c-----chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCcc
Confidence 1 1 1234566778654 56799999999999877643 2445556777766433 236788888876554
Q ss_pred HHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhccc
Q 013316 320 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQT 360 (445)
Q Consensus 320 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~ 360 (445)
-. |-++-+|+|.+++||.|-.+|+..++..|+.++.
T Consensus 497 dl-----DsAV~DRide~veFpLPGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 497 DL-----DSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYI 532 (630)
T ss_pred ch-----hHHHHhhhhheeecCCCChHHHHHHHHHHHHHHh
Confidence 32 7788899999999999999999999999999874
No 133
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.74 E-value=1.9e-17 Score=153.42 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=104.2
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCC---CCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc-cCCCCc
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERN---PVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-NMYGET 87 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~---~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~-d~~g~t 87 (445)
...++||.|+..|+.++++.|+ +.|+++|..+ +..|.||||+|+..++.+++++|+++ |+++|.+ +..|.|
T Consensus 32 ~~~~lL~~A~~~~~~eivk~LL-~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~----GADVN~~~~~~g~T 106 (300)
T PHA02884 32 CIANILYSSIKFHYTDIIDAIL-KLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRY----GADVNRYAEEAKIT 106 (300)
T ss_pred CCCHHHHHHHHcCCHHHHHHHH-HCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCcCcccCCCCCC
Confidence 4556788888889999999777 5689999874 22699999999999999999999995 8999986 468999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHH
Q 013316 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139 (445)
Q Consensus 88 pLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll 139 (445)
|||+|+..++.+++++|+.+|++++.+|..|+||+ +.|...++..++.++.
T Consensus 107 pLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL-~~A~~~~~~~~~~~~~ 157 (300)
T PHA02884 107 PLYISVLHGCLKCLEILLSYGADINIQTNDMVTPI-ELALMICNNFLAFMIC 157 (300)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHhCChhHHHHhc
Confidence 99999999999999999999999999999999999 6666656666655543
No 134
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=1.6e-16 Score=153.86 Aligned_cols=187 Identities=15% Similarity=0.191 Sum_probs=127.7
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------ 239 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~------ 239 (445)
..|++++|++.+++.+...+.. ...+..++|+||||||||++|+++++.+.+.......
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~---------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSL---------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred CchhhccChHHHHHHHHHHHHc---------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 4688899999999988875431 1234457999999999999999999998753211111
Q ss_pred -----------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316 240 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 301 (445)
Q Consensus 240 -----------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll 301 (445)
.+.+++++.- .....++.+++.. ...|+||||+|.+.. ..++.|+
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~~------~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-----------~a~naLL 140 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAASR------TKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-----------HSFNALL 140 (363)
T ss_pred HHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-----------HHHHHHH
Confidence 1222222110 1223445555442 346999999998865 6778899
Q ss_pred hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
+.+++ ..+.+|++++... . ..+++++|+ ..++|++|+.+++.++++..+++.. ..++++++
T Consensus 141 k~lEe~~~~~~fIl~t~~~~--~---l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g-----------~~i~~~al 203 (363)
T PRK14961 141 KTLEEPPQHIKFILATTDVE--K---IPKTILSRC-LQFKLKIISEEKIFNFLKYILIKES-----------IDTDEYAL 203 (363)
T ss_pred HHHhcCCCCeEEEEEcCChH--h---hhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99986 5566677665432 2 267899998 8899999999999999998887641 23556666
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNAR 408 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~ 408 (445)
. .+...+ .|+.|.+.+.+++++
T Consensus 204 ~-~ia~~s------~G~~R~al~~l~~~~ 225 (363)
T PRK14961 204 K-LIAYHA------HGSMRDALNLLEHAI 225 (363)
T ss_pred H-HHHHHc------CCCHHHHHHHHHHHH
Confidence 6 444555 456667777887764
No 135
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=5.8e-17 Score=166.35 Aligned_cols=186 Identities=17% Similarity=0.222 Sum_probs=129.2
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCe-eEeecCCCCchhHHHHHHHHHHHHcCCCCCCC----
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILPTDR---- 240 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~---- 240 (445)
..|++|+|++.++..|++++.. +...| +||+||||||||++||++|+.+.+.......+
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~----------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQ----------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh----------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 4678899999999988876542 23345 58999999999999999999997642111001
Q ss_pred -------------eEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHH
Q 013316 241 -------------VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEI 300 (445)
Q Consensus 241 -------------~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~l 300 (445)
+++++.++- ..-..++.+++.. +..|+||||+|.+.. ..++.|
T Consensus 77 ~sC~~i~~g~~~DviEidAas~------~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~-----------eAqNAL 139 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASR------TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR-----------SSFNAL 139 (944)
T ss_pred hHHHHHhcCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH-----------HHHHHH
Confidence 122222110 0123344444322 347999999999976 789999
Q ss_pred HhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHH
Q 013316 301 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 378 (445)
Q Consensus 301 l~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 378 (445)
|+.|++ +.+++|++|+.... + .+.+++|| .+++|++++.+++.+.+++.+... ...+++++
T Consensus 140 LKtLEEPP~~vrFILaTTe~~k--L---l~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~E-----------gI~~edeA 202 (944)
T PRK14949 140 LKTLEEPPEHVKFLLATTDPQK--L---PVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQE-----------QLPFEAEA 202 (944)
T ss_pred HHHHhccCCCeEEEEECCCchh--c---hHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHc-----------CCCCCHHH
Confidence 999997 66777777665443 2 57789998 999999999999999999888763 12456667
Q ss_pred HHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316 379 IAALIEKETTEKQRREMNGGLVDPMLVNAR 408 (445)
Q Consensus 379 l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~ 408 (445)
+. ++...+. |+.|.+.+++++++
T Consensus 203 L~-lIA~~S~------Gd~R~ALnLLdQal 225 (944)
T PRK14949 203 LT-LLAKAAN------GSMRDALSLTDQAI 225 (944)
T ss_pred HH-HHHHHcC------CCHHHHHHHHHHHH
Confidence 66 5556664 45555666676654
No 136
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.73 E-value=1e-16 Score=170.05 Aligned_cols=221 Identities=19% Similarity=0.320 Sum_probs=152.6
Q ss_pred HHHHHHHH-hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC
Q 013316 162 DELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 240 (445)
Q Consensus 162 ~~~~~~~~-~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~ 240 (445)
..++..+. .++|++.++..|.+.+.... .++.....+...++|+||||||||++|++||+.+... ..+
T Consensus 560 ~~l~~~l~~~viGQ~~ai~~l~~~i~~~~-------~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~----~~~ 628 (857)
T PRK10865 560 LRMEQELHHRVIGQNEAVEAVSNAIRRSR-------AGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS----DDA 628 (857)
T ss_pred HHHHHHhCCeEeCCHHHHHHHHHHHHHHH-------hcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC----CCc
Confidence 34455554 48999999999888665432 1221112233578999999999999999999988642 237
Q ss_pred eEEeecccccc-----ccc-------CCc-hhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC
Q 013316 241 VTEVQRTDLVG-----EFV-------GHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG 307 (445)
Q Consensus 241 ~~~~~~~~l~~-----~~~-------g~~-~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~ 307 (445)
|+.++++.+.. .++ |+. ...+...+....++|||||||+++.+ .+++.|++.++++
T Consensus 629 ~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~-----------~v~~~Ll~ile~g 697 (857)
T PRK10865 629 MVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP-----------DVFNILLQVLDDG 697 (857)
T ss_pred EEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH-----------HHHHHHHHHHhhC
Confidence 88888876532 223 332 23345556666789999999998887 7889999999764
Q ss_pred c-------------EEEEEecCch--hHH------------H----H--HhhCcccccccccceeCCCCCHHHHHHHHHH
Q 013316 308 K-------------VVVIFAGYSE--PMK------------R----V--IASNEGFCRRVTKFFHFNDFNSEELAKILHI 354 (445)
Q Consensus 308 ~-------------~~~i~a~~~~--~~~------------~----~--~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~ 354 (445)
. .++|++++.. .+. . . ....|+|++|+|.++.|.+++.+++.+|++.
T Consensus 698 ~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~ 777 (857)
T PRK10865 698 RLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQI 777 (857)
T ss_pred ceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHH
Confidence 2 2466666541 100 0 0 0124899999999999999999999999999
Q ss_pred HHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316 355 KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 410 (445)
Q Consensus 355 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~ 410 (445)
++.+...++...++ ...++++++..+..+.+.. ...+|.+++++++-+..
T Consensus 778 ~L~~l~~rl~~~gi--~l~is~~al~~L~~~gy~~----~~GARpL~r~I~~~i~~ 827 (857)
T PRK10865 778 QLQRLYKRLEERGY--EIHISDEALKLLSENGYDP----VYGARPLKRAIQQQIEN 827 (857)
T ss_pred HHHHHHHHHHhCCC--cCcCCHHHHHHHHHcCCCc----cCChHHHHHHHHHHHHH
Confidence 99886554433333 3468888988777655422 23489999999887665
No 137
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.73 E-value=1.4e-17 Score=175.38 Aligned_cols=150 Identities=21% Similarity=0.225 Sum_probs=81.5
Q ss_pred CCccCccCCC-CCchHhHHHHHcC-CHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhC-CcHHHHHHhhcCCCCCCccc
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSG-DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGY-NKAEIVKSLLEWPGNDKVEL 78 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g-~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~-g~~~iv~~Ll~~~~~~g~~v 78 (445)
+.|++++..+ .|.||||+|+..| +.+.++.|+ ..|++++..+. .|+||||+|+.. ++.+++++|++. |+++
T Consensus 295 ~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll-~~gadin~~d~-~g~TpLh~A~~~~~~~~iv~lLl~~----gadi 368 (682)
T PHA02876 295 ERGADVNAKNIKGETPLYLMAKNGYDTENIRTLI-MLGADVNAADR-LYITPLHQASTLDRNKDIVITLLEL----GANV 368 (682)
T ss_pred HCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHH-HcCCCCCCccc-CCCcHHHHHHHhCCcHHHHHHHHHc----CCCC
Confidence 3455555544 4666666666666 344444333 34555665554 466666666553 345555555553 5556
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316 79 EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET 157 (445)
Q Consensus 79 ~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~ 157 (445)
+.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+++...+...++++|+..+++.+.++..+.++..
T Consensus 369 n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh 447 (682)
T PHA02876 369 NARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLH 447 (682)
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHH
Confidence 6666666666666666666666666665555555555555555533333333344455555555555444444444443
No 138
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=1.9e-16 Score=160.22 Aligned_cols=187 Identities=16% Similarity=0.213 Sum_probs=130.1
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------ 239 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~------ 239 (445)
..|++++|++.++..|...+.. ...+..+||+||+|||||++|+.+|+.+.+.......
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~---------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDL---------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 4688999999999988875542 1223346899999999999999999999874221111
Q ss_pred -----------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316 240 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 301 (445)
Q Consensus 240 -----------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll 301 (445)
.+++++.++- ..-..++++++.. +..|+||||+|.+.. ..++.||
T Consensus 78 ~C~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-----------~a~NALL 140 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALL 140 (647)
T ss_pred HHHHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-----------HHHHHHH
Confidence 1233332210 0223455555443 347999999999986 7889999
Q ss_pred hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
+.|++ +.+++|++|+.... + -+.+++|| ..++|.+++.+++.+.+.+.+.+.. ..++.+++
T Consensus 141 KtLEEPp~~v~FIL~Tt~~~k--L---l~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~-----------i~~e~~aL 203 (647)
T PRK07994 141 KTLEEPPEHVKFLLATTDPQK--L---PVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQ-----------IPFEPRAL 203 (647)
T ss_pred HHHHcCCCCeEEEEecCCccc--c---chHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99997 66778887765442 2 57789998 9999999999999999998887641 23455666
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNAR 408 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~ 408 (445)
. .+...+ .|+.|.+.++++.++
T Consensus 204 ~-~Ia~~s------~Gs~R~Al~lldqai 225 (647)
T PRK07994 204 Q-LLARAA------DGSMRDALSLTDQAI 225 (647)
T ss_pred H-HHHHHc------CCCHHHHHHHHHHHH
Confidence 5 555666 445555666666653
No 139
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.73 E-value=8.3e-17 Score=146.25 Aligned_cols=186 Identities=14% Similarity=0.167 Sum_probs=120.5
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc-cCcEEEEcCccccc
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLI 282 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~l~ 282 (445)
..+.+++|+||||||||++|+++++.+...+ .+++.++++.+.... ...+... ...+|+|||+|.+.
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~----~~~~~i~~~~~~~~~--------~~~~~~~~~~~lLvIDdi~~l~ 103 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERG----KSAIYLPLAELAQAD--------PEVLEGLEQADLVCLDDVEAIA 103 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcC----CcEEEEeHHHHHHhH--------HHHHhhcccCCEEEEeChhhhc
Confidence 4567999999999999999999999987533 278888888774321 2233322 33699999999987
Q ss_pred cCCCCCCchhHHHHHHHHHhhc-cCCcEEEEEecCchhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhcc
Q 013316 283 PMQKADDKDYGIEALEEIMSVM-DGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQ 359 (445)
Q Consensus 283 ~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~ 359 (445)
.... ..+.+-.++..+ +.+. .+|++++..+.. .....+.|.+|+. ..+.+|+|+.+++..+++.++.+.
T Consensus 104 ~~~~------~~~~L~~~l~~~~~~~~-~iIits~~~~~~-~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~ 175 (226)
T TIGR03420 104 GQPE------WQEALFHLYNRVREAGG-RLLIAGRAAPAQ-LPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARR 175 (226)
T ss_pred CChH------HHHHHHHHHHHHHHcCC-eEEEECCCChHH-CCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHc
Confidence 5320 012222333222 2233 444444433322 1111267888874 689999999999999998876643
Q ss_pred cccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHH
Q 013316 360 TEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 437 (445)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~ 437 (445)
...++++++..+.. .| ++|.|+++++++++...... .-.+|+.+.+.+.+
T Consensus 176 -----------~~~~~~~~l~~L~~-~~------~gn~r~L~~~l~~~~~~~~~----------~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 176 -----------GLQLPDEVADYLLR-HG------SRDMGSLMALLDALDRASLA----------AKRKITIPFVKEVL 225 (226)
T ss_pred -----------CCCCCHHHHHHHHH-hc------cCCHHHHHHHHHHHHHHHHH----------hCCCCCHHHHHHHh
Confidence 23567778876665 57 89999999999987432111 11257777776654
No 140
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.73 E-value=6.3e-18 Score=148.18 Aligned_cols=130 Identities=28% Similarity=0.362 Sum_probs=111.0
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 013316 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (445)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpL 89 (445)
.+-|.+|||+||+.|+..+++.||. .|+.+|..+- ...||||+|+..||-++|+.|++. .+|+|..+..|+|||
T Consensus 31 ddhgfsplhwaakegh~aivemll~-rgarvn~tnm-gddtplhlaaahghrdivqkll~~----kadvnavnehgntpl 104 (448)
T KOG0195|consen 31 DDHGFSPLHWAAKEGHVAIVEMLLS-RGARVNSTNM-GDDTPLHLAAAHGHRDIVQKLLSR----KADVNAVNEHGNTPL 104 (448)
T ss_pred cccCcchhhhhhhcccHHHHHHHHh-cccccccccC-CCCcchhhhhhcccHHHHHHHHHH----hcccchhhccCCCch
Confidence 4468999999999999999987764 6899998885 457999999999999999999985 789999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHH
Q 013316 90 HMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 146 (445)
Q Consensus 90 h~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~ 146 (445)
|+||..|.-.+++-|+.+||.+++.|+.|.||+ -.|++.-...+.++..++|..++
T Consensus 105 hyacfwgydqiaedli~~ga~v~icnk~g~tpl-dkakp~l~~~l~e~aek~gq~~n 160 (448)
T KOG0195|consen 105 HYACFWGYDQIAEDLISCGAAVNICNKKGMTPL-DKAKPMLKNTLLEIAEKHGQSPN 160 (448)
T ss_pred hhhhhhcHHHHHHHHHhccceeeecccCCCCch-hhhchHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999 55665544555555555665543
No 141
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.73 E-value=1e-16 Score=169.53 Aligned_cols=219 Identities=18% Similarity=0.277 Sum_probs=150.2
Q ss_pred HHHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC
Q 013316 162 DELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 240 (445)
Q Consensus 162 ~~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~ 240 (445)
..++..|.+ ++||+.+...+.+.+... ..++.....+...+||.||||||||.+|+++|+.+... ...
T Consensus 558 ~~l~~~L~~~v~GQ~~Av~~v~~~i~~~-------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~----~~~ 626 (852)
T TIGR03345 558 LSLPDRLAERVIGQDHALEAIAERIRTA-------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG----EQN 626 (852)
T ss_pred HHHHHHhcCeEcChHHHHHHHHHHHHHH-------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC----Ccc
Confidence 344555543 999999998888865432 23333333333458999999999999999999998542 227
Q ss_pred eEEeeccccc---------cc---ccCCc-hhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC
Q 013316 241 VTEVQRTDLV---------GE---FVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG 307 (445)
Q Consensus 241 ~~~~~~~~l~---------~~---~~g~~-~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~ 307 (445)
++.++++.+. +. |+|+. +..+...++..+++||+|||||++++ ++++.|++.++++
T Consensus 627 ~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~-----------~v~~~Llq~ld~g 695 (852)
T TIGR03345 627 LITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHP-----------DVLELFYQVFDKG 695 (852)
T ss_pred eEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCH-----------HHHHHHHHHhhcc
Confidence 7888877642 22 45542 23466777778889999999998887 7888999999864
Q ss_pred c-------------EEEEEecCchhHH--H-----------------H-----HhhCcccccccccceeCCCCCHHHHHH
Q 013316 308 K-------------VVVIFAGYSEPMK--R-----------------V-----IASNEGFCRRVTKFFHFNDFNSEELAK 350 (445)
Q Consensus 308 ~-------------~~~i~a~~~~~~~--~-----------------~-----~~~~~~l~~R~~~~i~~~~~~~~~~~~ 350 (445)
. .++|++++..... . + ..-.|+|++|++ +|.|.+++.+++.+
T Consensus 696 ~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~ 774 (852)
T TIGR03345 696 VMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAA 774 (852)
T ss_pred eeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHH
Confidence 2 4666665421110 0 0 012488999996 89999999999999
Q ss_pred HHHHHHhccccccccc-ccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 351 ILHIKMNNQTEDSLLY-GFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 351 il~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
|++..+.+...++... ++. -.++++++..+....++ ...| +|-+++++++-+.
T Consensus 775 Iv~~~L~~l~~rl~~~~gi~--l~i~d~a~~~La~~g~~---~~~G-AR~L~r~Ie~~i~ 828 (852)
T TIGR03345 775 IVRLKLDRIARRLKENHGAE--LVYSEALVEHIVARCTE---VESG-ARNIDAILNQTLL 828 (852)
T ss_pred HHHHHHHHHHHHHHHhcCce--EEECHHHHHHHHHHcCC---CCCC-hHHHHHHHHHHHH
Confidence 9999998765444322 333 36778888877765542 1223 7888888887544
No 142
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.4e-16 Score=161.82 Aligned_cols=175 Identities=19% Similarity=0.281 Sum_probs=143.0
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHH---cCCCCCCCeE
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM---VGILPTDRVT 242 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~---~~~~~~~~~~ 242 (445)
..++-++|.+.-++++.+.+- .+...+.+|.|+||+|||.++..+|+.+-. +..+....++
T Consensus 167 gklDPvIGRd~EI~r~iqIL~----------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~ 230 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILS----------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY 230 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHh----------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE
Confidence 345669999976666555322 345678899999999999999999998854 2235566788
Q ss_pred Eeecccccc--cccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316 243 EVQRTDLVG--EFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 317 (445)
Q Consensus 243 ~~~~~~l~~--~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~ 317 (445)
.++.+.++. +|-|+-+..+..++++.. +.||||||||.+.+.+...+ + ..++-|.|...+..|.+.+|+|||.
T Consensus 231 sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaLARGeL~~IGATT~ 308 (786)
T COG0542 231 SLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPALARGELRCIGATTL 308 (786)
T ss_pred EecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHHhcCCeEEEEeccH
Confidence 888888764 489999999999887654 78999999999998665433 2 4577888999999999999999999
Q ss_pred hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcc
Q 013316 318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 359 (445)
Q Consensus 318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~ 359 (445)
+++...+..|++|.||| +.|.+..|+.++-..|++-.-.++
T Consensus 309 ~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~y 349 (786)
T COG0542 309 DEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERY 349 (786)
T ss_pred HHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999755544
No 143
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.1e-16 Score=142.78 Aligned_cols=163 Identities=17% Similarity=0.221 Sum_probs=110.8
Q ss_pred CcEEEEcCccccccCCCCCCchhHHH-HHHHHHhhccCC------------cEEEEEecCchhHHHHHhhCccccccccc
Q 013316 270 GGILFVDEAYRLIPMQKADDKDYGIE-ALEEIMSVMDGG------------KVVVIFAGYSEPMKRVIASNEGFCRRVTK 336 (445)
Q Consensus 270 ~~il~lDEid~l~~~~~~~~~~~~~~-~~~~ll~~~~~~------------~~~~i~a~~~~~~~~~~~~~~~l~~R~~~ 336 (445)
.||+||||||+++.+.++++++.+++ +|..||..+++. .+.+|+++.-. ...+-..-|.|..||+.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh-~sKPSDLiPELQGRfPI 329 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFH-VAKPSDLIPELQGRFPI 329 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCcee-cCChhhcChhhcCCCce
Confidence 49999999999998877555566664 566699998862 35777766422 12222235999999999
Q ss_pred ceeCCCCCHHHHHHHHH----HHHhcccccccccccccCCcccHHHHHHHHHHHHHHh--hhcccCchhhHHHHHHHHHh
Q 013316 337 FFHFNDFNSEELAKILH----IKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEK--QRREMNGGLVDPMLVNAREN 410 (445)
Q Consensus 337 ~i~~~~~~~~~~~~il~----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~n~r~l~~~~~~~~~~ 410 (445)
.+++..++.++...||. ..++++..-+..+++. -.|+++++..+..-.|.-. ....| +|.|..++|+....
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~--l~FtddaI~~iAeiA~~vN~~~ENIG-ARRLhTvlErlLed 406 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVE--LEFTDDAIKRIAEIAYQVNEKTENIG-ARRLHTVLERLLED 406 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCee--EEecHHHHHHHHHHHHHhcccccchh-HHHHHHHHHHHHHH
Confidence 99999999999999983 3455554445555554 4788899988766665333 33344 88899999988554
Q ss_pred hhhhhccCCCC-hhhhhhccHHHHHHHHHHH
Q 013316 411 LDLRLSFDCLD-TDELRTITLEDLEAGLKLL 440 (445)
Q Consensus 411 ~~~~~~~~~~~-~~~~~~i~~~d~~~a~~~~ 440 (445)
... ...+ .....+|+.+=|.+-+..+
T Consensus 407 iSF----eA~d~~g~~v~Id~~yV~~~l~~l 433 (444)
T COG1220 407 ISF----EAPDMSGQKVTIDAEYVEEKLGDL 433 (444)
T ss_pred hCc----cCCcCCCCeEEEcHHHHHHHHHHH
Confidence 322 2222 3445678877777766554
No 144
>PHA02798 ankyrin-like protein; Provisional
Probab=99.73 E-value=2.7e-17 Score=166.43 Aligned_cols=144 Identities=19% Similarity=0.164 Sum_probs=104.6
Q ss_pred CCccCccCCC-CCchHhHHHHHcC---CHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCc---HHHHHHhhcCCCC-
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSG---DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK---AEIVKSLLEWPGN- 73 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~---~~iv~~Ll~~~~~- 73 (445)
+.|++++..+ .|.||||+|+..+ +.++++.|+ +.|++++..+. .|.||||+|+..++ .+++++|++.+.+
T Consensus 97 ~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll-~~Gadvn~~d~-~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi 174 (489)
T PHA02798 97 ENGADINKKNSDGETPLYCLLSNGYINNLEILLFMI-ENGADTTLLDK-DGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI 174 (489)
T ss_pred HCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHH-HcCCCccccCC-CCCcHHHHHHHcCCcchHHHHHHHHHhCCCc
Confidence 4566666554 4666666666654 455555444 34666666665 56666666666655 5666665554210
Q ss_pred ---------------------------------C---------------------------------------Ccccccc
Q 013316 74 ---------------------------------D---------------------------------------KVELEAQ 81 (445)
Q Consensus 74 ---------------------------------~---------------------------------------g~~v~~~ 81 (445)
. ++++|.+
T Consensus 175 n~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~ 254 (489)
T PHA02798 175 NTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQV 254 (489)
T ss_pred ccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCc
Confidence 0 1345667
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhh
Q 013316 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 148 (445)
Q Consensus 82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~ 148 (445)
|..|.||||+|+..|+.+++++|++.||+++.+|..|+||| +.|...++.++++.+++.+++....
T Consensus 255 d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL-~~A~~~~~~~iv~~lL~~~~~~~~i 320 (489)
T PHA02798 255 DELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCL-FTAFENESKFIFNSILNKKPNKNTI 320 (489)
T ss_pred CcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHH-HHHHHcCcHHHHHHHHccCCCHHHH
Confidence 78899999999999999999999999999999999999999 7888899999999999888765543
No 145
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.72 E-value=2.6e-17 Score=138.94 Aligned_cols=139 Identities=19% Similarity=0.173 Sum_probs=124.3
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 013316 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (445)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh 90 (445)
..+++|+.+++...+++.+..+. ...+|..|. .|.|||.||+.+|+..+|++||+. |+++++..++..++|.
T Consensus 127 ~~p~s~~slsVhql~L~~~~~~~---~n~VN~~De-~GfTpLiWAaa~G~i~vV~fLL~~----GAdp~~lgk~resALs 198 (296)
T KOG0502|consen 127 LMPWSPLSLSVHQLHLDVVDLLV---NNKVNACDE-FGFTPLIWAAAKGHIPVVQFLLNS----GADPDALGKYRESALS 198 (296)
T ss_pred cccCChhhHHHHHHHHHHHHHHh---hccccCccc-cCchHhHHHHhcCchHHHHHHHHc----CCChhhhhhhhhhhHh
Confidence 36899999999999888765443 356889987 799999999999999999999995 9999999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhH
Q 013316 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETK 158 (445)
Q Consensus 91 ~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~ 158 (445)
+|++.|..++|++|+..+.|+|.-|.+|.||| .+|.+.++.++++.|+..|+++..-...+++....
T Consensus 199 LAt~ggytdiV~lLL~r~vdVNvyDwNGgTpL-lyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdl 265 (296)
T KOG0502|consen 199 LATRGGYTDIVELLLTREVDVNVYDWNGGTPL-LYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDL 265 (296)
T ss_pred HHhcCChHHHHHHHHhcCCCcceeccCCCcee-eeeecCChHHHHHHHHhcCCCcccccccCCcHHHH
Confidence 99999999999999999999999999999999 89999999999999999999987776666555443
No 146
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.72 E-value=1.4e-17 Score=174.51 Aligned_cols=137 Identities=35% Similarity=0.457 Sum_probs=116.6
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhh--------------------------------CCCCcCCCCCCCC
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRE--------------------------------NPSLLNERNPVMA 48 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~--------------------------------~~~~~~~~~~~~g 48 (445)
++|.++|... .|.||||.|+..|+.+.+..++.. ++.+++.++. .|
T Consensus 462 ~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~-r~ 540 (1143)
T KOG4177|consen 462 QYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTG-RG 540 (1143)
T ss_pred hcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcc-cc
Confidence 4677777766 688888888888888777766552 3566666666 68
Q ss_pred ChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcC
Q 013316 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNG 128 (445)
Q Consensus 49 ~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~ 128 (445)
.||||+||.+|+.++|++||++ |++++.++..|+||||.||..|+.+|+.+|+++||++|..|.+|.||| +.+..
T Consensus 541 ~TpLh~A~~~g~v~~VkfLLe~----gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL-~iA~~ 615 (1143)
T KOG4177|consen 541 YTPLHVAVHYGNVDLVKFLLEH----GADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPL-HIAVR 615 (1143)
T ss_pred cchHHHHHhcCCchHHHHhhhC----CccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchh-HHHHH
Confidence 8999999999999999999995 889999999999999999999999999999999999999999999999 88899
Q ss_pred CCChHHHHHHHhhhhh
Q 013316 129 PGSAKLRELLLWHSEE 144 (445)
Q Consensus 129 ~~~~~i~~~ll~~~~~ 144 (445)
.++..++++++..++.
T Consensus 616 lg~~~~~k~l~~~~~~ 631 (1143)
T KOG4177|consen 616 LGYLSVVKLLKVVTAT 631 (1143)
T ss_pred hcccchhhHHHhccCc
Confidence 9999999999888877
No 147
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.72 E-value=1.8e-16 Score=168.43 Aligned_cols=219 Identities=19% Similarity=0.314 Sum_probs=153.4
Q ss_pred HHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCe
Q 013316 163 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV 241 (445)
Q Consensus 163 ~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~ 241 (445)
.++..|.+ ++||+.+++.|.+.+... ..++....++...+||+||||||||++|+++|+.+... ..++
T Consensus 502 ~l~~~L~~~v~GQ~~ai~~l~~~i~~~-------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~----~~~~ 570 (821)
T CHL00095 502 HMEETLHKRIIGQDEAVVAVSKAIRRA-------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS----EDAM 570 (821)
T ss_pred HHHHHhcCcCcChHHHHHHHHHHHHHH-------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC----ccce
Confidence 34555544 999999998888755422 23333333344568999999999999999999988532 2267
Q ss_pred EEeeccccc---------c---cccCCch-hHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc
Q 013316 242 TEVQRTDLV---------G---EFVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK 308 (445)
Q Consensus 242 ~~~~~~~l~---------~---~~~g~~~-~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~ 308 (445)
+.++.+.+. + .|+|+.. ..+...+...+.+||+|||||++++ ++++.|++.+++++
T Consensus 571 ~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~-----------~v~~~Llq~le~g~ 639 (821)
T CHL00095 571 IRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHP-----------DIFNLLLQILDDGR 639 (821)
T ss_pred EEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCH-----------HHHHHHHHHhccCc
Confidence 777766542 1 1455433 4566777777889999999999987 88999999998743
Q ss_pred -------------EEEEEecCchhH-----------------------HHH---------HhhCcccccccccceeCCCC
Q 013316 309 -------------VVVIFAGYSEPM-----------------------KRV---------IASNEGFCRRVTKFFHFNDF 343 (445)
Q Consensus 309 -------------~~~i~a~~~~~~-----------------------~~~---------~~~~~~l~~R~~~~i~~~~~ 343 (445)
.++|++++.... ..+ -.-.|+|++|+|.+|.|.++
T Consensus 640 ~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL 719 (821)
T CHL00095 640 LTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQL 719 (821)
T ss_pred eecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCC
Confidence 466666543211 000 00137899999999999999
Q ss_pred CHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 344 NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 344 ~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
+.+++.+|++..+.+...++...++.+ .++++++..+....+. ...| +|-++.++++.+.
T Consensus 720 ~~~~l~~Iv~~~l~~l~~rl~~~~i~l--~~~~~~~~~La~~~~~---~~~G-AR~l~r~i~~~i~ 779 (821)
T CHL00095 720 TKNDVWEIAEIMLKNLFKRLNEQGIQL--EVTERIKTLLIEEGYN---PLYG-ARPLRRAIMRLLE 779 (821)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCcEE--EECHHHHHHHHHhcCC---CCCC-hhhHHHHHHHHHH
Confidence 999999999999998766665554443 6788888877765332 2234 7888888877764
No 148
>PHA03095 ankyrin-like protein; Provisional
Probab=99.72 E-value=4.7e-17 Score=164.50 Aligned_cols=153 Identities=22% Similarity=0.220 Sum_probs=101.4
Q ss_pred CCccCccCCC-CCchHhHHHH--HcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhC--------------------
Q 013316 2 QKNQDRRSRS-AKPATIHGCA--QSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGY-------------------- 58 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~--~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~-------------------- 58 (445)
+.|++++..+ .|.||||+|+ ..++.++++.|+. .|++++..+. .|.||||+|+..
T Consensus 105 ~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~-~gad~~~~d~-~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~ 182 (471)
T PHA03095 105 KAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLR-KGADVNALDL-YGMTPLAVLLKSRNANVELLRLLIDAGADVYA 182 (471)
T ss_pred HcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHH-cCCCCCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcc
Confidence 3455555554 2566666665 3344555554443 3455555443 455555544433
Q ss_pred -----------------CcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCH--HHHHHHHhcCCCCcccccCCC
Q 013316 59 -----------------NKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN--EAAKLLLAHGAFIEAKANEGK 119 (445)
Q Consensus 59 -----------------g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~--~~~~~Ll~~ga~~~~~~~~g~ 119 (445)
++.+++++|++. |++++.+|..|.||||+|+..|+. .++..|+..|++++.+|..|+
T Consensus 183 ~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~----g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~ 258 (471)
T PHA03095 183 VDDRFRSLLHHHLQSFKPRARIVRELIRA----GCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQ 258 (471)
T ss_pred cCCCCCCHHHHHHHHCCCcHHHHHHHHHc----CCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCC
Confidence 334455555553 667777777788888888877764 567788888999999999999
Q ss_pred ChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHHhH
Q 013316 120 TPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKM 161 (445)
Q Consensus 120 tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a~~ 161 (445)
||| |+|+..++.+++++|+.+|+++..++..+.++...+..
T Consensus 259 TpL-h~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~ 299 (471)
T PHA03095 259 TPL-HYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVR 299 (471)
T ss_pred CHH-HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 999 77888888999999999999888877777666655533
No 149
>PLN03025 replication factor C subunit; Provisional
Probab=99.72 E-value=1.7e-16 Score=151.23 Aligned_cols=181 Identities=21% Similarity=0.242 Sum_probs=122.2
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|+++++..|+.++. ....++++|+||||||||++|+++|+.+...+. ...+++++.
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~----------------~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~--~~~~~eln~ 72 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIAR----------------DGNMPNLILSGPPGTGKTTSILALAHELLGPNY--KEAVLELNA 72 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHh----------------cCCCceEEEECCCCCCHHHHHHHHHHHHhcccC--ccceeeecc
Confidence 57889999999888887543 223458999999999999999999999854321 124667777
Q ss_pred ccccccccCCchhHHHHHHH---H-------ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEe
Q 013316 247 TDLVGEFVGHTGPKTRRRIK---E-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFA 314 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~---~-------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a 314 (445)
++..+ ...++..++ + ....|++|||+|.+.. ..++.|+..|+. ....+|++
T Consensus 73 sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~-----------~aq~aL~~~lE~~~~~t~~il~ 135 (319)
T PLN03025 73 SDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS-----------GAQQALRRTMEIYSNTTRFALA 135 (319)
T ss_pred ccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH-----------HHHHHHHHHHhcccCCceEEEE
Confidence 65422 112333221 1 2347999999999976 556777777764 33344444
Q ss_pred cCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316 315 GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 394 (445)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 394 (445)
++... . ..++|++|+ ..++|++|+.+++...++..+++.. ..++++++..++ ..++
T Consensus 136 ~n~~~--~---i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~eg-----------i~i~~~~l~~i~-~~~~------ 191 (319)
T PLN03025 136 CNTSS--K---IIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEK-----------VPYVPEGLEAII-FTAD------ 191 (319)
T ss_pred eCCcc--c---cchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHH-HHcC------
Confidence 44322 1 257899998 7899999999999999998887642 245567777555 4453
Q ss_pred cCchhhHHHHHH
Q 013316 395 MNGGLVDPMLVN 406 (445)
Q Consensus 395 ~n~r~l~~~~~~ 406 (445)
|+.|.+.+.++.
T Consensus 192 gDlR~aln~Lq~ 203 (319)
T PLN03025 192 GDMRQALNNLQA 203 (319)
T ss_pred CCHHHHHHHHHH
Confidence 444555555653
No 150
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=2.5e-16 Score=158.71 Aligned_cols=188 Identities=17% Similarity=0.201 Sum_probs=132.7
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------ 239 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~------ 239 (445)
..|++|+|++.+++.|+.++.. ...+..+||+||+|||||++|+++++.+.+.......
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~---------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDE---------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 4688999999999999886542 2345568999999999999999999998764321111
Q ss_pred -----------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316 240 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 301 (445)
Q Consensus 240 -----------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll 301 (445)
.+++++.++ +.....++.+++.+ +..|+||||+|.+.. ..++.|+
T Consensus 78 sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-----------~A~NALL 140 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-----------SAFNAML 140 (709)
T ss_pred HHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-----------HHHHHHH
Confidence 122222211 11234566666543 457999999998865 6788899
Q ss_pred hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
+.|++ +.+.+|++++.... +.+.+++|| ..+.|+.++.+++...+.+.+.+.. ..++.+++
T Consensus 141 KtLEEPp~~v~fILaTtd~~k-----L~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEg-----------i~id~eAL 203 (709)
T PRK08691 141 KTLEEPPEHVKFILATTDPHK-----VPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEK-----------IAYEPPAL 203 (709)
T ss_pred HHHHhCCCCcEEEEEeCCccc-----cchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcC-----------CCcCHHHH
Confidence 99986 56667776654322 146788998 8999999999999999999888642 24566777
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
..+. +.+ .|+.|.+.+++++++.
T Consensus 204 ~~Ia-~~A------~GslRdAlnLLDqaia 226 (709)
T PRK08691 204 QLLG-RAA------AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHH-HHh------CCCHHHHHHHHHHHHH
Confidence 6444 555 4677788888888754
No 151
>PHA02946 ankyin-like protein; Provisional
Probab=99.71 E-value=3.4e-17 Score=162.71 Aligned_cols=150 Identities=15% Similarity=0.213 Sum_probs=122.7
Q ss_pred CCCccCccCCC-CCchHhHHHHHcCC--HHHHHHHHhhCCCCcCCC-CCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCc
Q 013316 1 MQKNQDRRSRS-AKPATIHGCAQSGD--LLAFQRLLRENPSLLNER-NPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76 (445)
Q Consensus 1 l~~~~~~~~~~-~~~t~L~~A~~~g~--~~~v~~ll~~~~~~~~~~-~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~ 76 (445)
++.|++++..+ .|.||||+|+..++ .++++.|+ ..|+++|.. +. .|.|||| ||..++.+++++|++. |+
T Consensus 92 L~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl-~~Gadin~~~d~-~g~tpL~-aa~~~~~~vv~~Ll~~----ga 164 (446)
T PHA02946 92 LTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLV-QYGAKINNSVDE-EGCGPLL-ACTDPSERVFKKIMSI----GF 164 (446)
T ss_pred HHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHH-HcCCCcccccCC-CCCcHHH-HHHCCChHHHHHHHhc----cc
Confidence 35789999876 69999999988764 67777665 578999864 54 7999998 6667899999999995 88
Q ss_pred ccccccCCCCcHHHHHHHcC--CHHHHHHHHhcCCCCcccccCCCChhhhhhcCC--CChHHHHHHHhhhhhHHhhhhhh
Q 013316 77 ELEAQNMYGETPLHMAAKNG--CNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGP--GSAKLRELLLWHSEEQRKRRALE 152 (445)
Q Consensus 77 ~v~~~d~~g~tpLh~A~~~g--~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~--~~~~i~~~ll~~~~~~~~~~~~~ 152 (445)
+++.+|..|.||||+|+..+ +.+++++|++.|++++.+|.+|+||| |+|+.. +..+++++|+. +++.+.++..+
T Consensus 165 d~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpL-H~Aa~~~~~~~~iv~lLl~-gadin~~d~~G 242 (446)
T PHA02946 165 EARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPL-HIVCSKTVKNVDIINLLLP-STDVNKQNKFG 242 (446)
T ss_pred cccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHH-HHHHHcCCCcHHHHHHHHc-CCCCCCCCCCC
Confidence 99999999999999988754 46899999999999999999999999 555554 36788888885 78887777777
Q ss_pred hhhhhHH
Q 013316 153 ACSETKA 159 (445)
Q Consensus 153 ~~~~~~a 159 (445)
.++...+
T Consensus 243 ~TpLh~A 249 (446)
T PHA02946 243 DSPLTLL 249 (446)
T ss_pred CCHHHHH
Confidence 7776544
No 152
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=4.2e-16 Score=157.02 Aligned_cols=187 Identities=19% Similarity=0.201 Sum_probs=131.3
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCe-eEeecCCCCchhHHHHHHHHHHHHcCCCC-------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILP------- 237 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-vll~Gp~GtGKt~~A~~la~~~~~~~~~~------- 237 (445)
..|++++|++.+++.|+.++. .+...| +||+||+|||||++|+++|+.+.+.....
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~----------------~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALD----------------AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHH----------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 468899999999999888654 223445 79999999999999999999987632110
Q ss_pred ------------CCCeEEeecccccccccCCchhHHHHHHHH-------ccCcEEEEcCccccccCCCCCCchhHHHHHH
Q 013316 238 ------------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALE 298 (445)
Q Consensus 238 ------------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~-------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~ 298 (445)
...+++++.++.. .-..++++.+. +.+.|+||||+|.+.. .+++
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-----------~A~N 136 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHG------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-----------AGFN 136 (584)
T ss_pred HHHHHhhcccCCCceEEEecccccc------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-----------HHHH
Confidence 1123333332210 12334443322 3568999999999976 6889
Q ss_pred HHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccH
Q 013316 299 EIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSM 376 (445)
Q Consensus 299 ~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 376 (445)
.|++.|++ ..+++|++|+... .+ .+++++|+ ..++|..++.+++.+.+...+.+.. ..+++
T Consensus 137 ALLK~LEEpp~~~~fIL~tte~~--kl---l~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~eg-----------i~i~~ 199 (584)
T PRK14952 137 ALLKIVEEPPEHLIFIFATTEPE--KV---LPTIRSRT-HHYPFRLLPPRTMRALIARICEQEG-----------VVVDD 199 (584)
T ss_pred HHHHHHhcCCCCeEEEEEeCChH--hh---HHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcC-----------CCCCH
Confidence 99999987 6788888776543 22 57889997 8999999999999999998887642 23555
Q ss_pred HHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 377 DAIAALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 377 ~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
+++. ++...+ .|+.|.+.+++++++.
T Consensus 200 ~al~-~Ia~~s------~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 200 AVYP-LVIRAG------GGSPRDTLSVLDQLLA 225 (584)
T ss_pred HHHH-HHHHHc------CCCHHHHHHHHHHHHh
Confidence 6665 445555 4566677777877643
No 153
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=5.6e-16 Score=154.68 Aligned_cols=188 Identities=14% Similarity=0.201 Sum_probs=129.5
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------ 239 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~------ 239 (445)
..|++++|++.+++.|...+.. ...+..+||+||||||||++|+.+|+.+.+.......
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~---------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALET---------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE 77 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 4688899999999888876542 1234458899999999999999999988753221111
Q ss_pred -----------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316 240 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 301 (445)
Q Consensus 240 -----------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll 301 (445)
.+++++.+.- . ....++++++.+ ...|+||||+|.+.. ..++.|+
T Consensus 78 sC~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-----------~a~naLL 140 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-----------QSFNALL 140 (546)
T ss_pred HHHHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-----------HHHHHHH
Confidence 2222322110 1 122344444332 457999999998876 7889999
Q ss_pred hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
+.|++ +.+++|++|+.. ..+ .+.+++|+ ..++|.+++.+++...+...+.+.. ..++++++
T Consensus 141 K~LEepp~~v~fIL~Ttd~--~ki---l~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~eg-----------i~~e~~Al 203 (546)
T PRK14957 141 KTLEEPPEYVKFILATTDY--HKI---PVTILSRC-IQLHLKHISQADIKDQLKIILAKEN-----------INSDEQSL 203 (546)
T ss_pred HHHhcCCCCceEEEEECCh--hhh---hhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99997 567777776542 222 46689999 9999999999999999998887641 24566676
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
. ++...+ .|+.|.+.+.++.++.
T Consensus 204 ~-~Ia~~s------~GdlR~alnlLek~i~ 226 (546)
T PRK14957 204 E-YIAYHA------KGSLRDALSLLDQAIS 226 (546)
T ss_pred H-HHHHHc------CCCHHHHHHHHHHHHH
Confidence 6 444555 4566677777887753
No 154
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.71 E-value=4.8e-17 Score=161.01 Aligned_cols=138 Identities=26% Similarity=0.385 Sum_probs=115.4
Q ss_pred CccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCC--------------CcCCCCCCCCChHHHHHHhCCcHHHHHHh
Q 013316 3 KNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPS--------------LLNERNPVMAQTPLHVSAGYNKAEIVKSL 67 (445)
Q Consensus 3 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~--------------~~~~~~~~~g~tpLh~A~~~g~~~iv~~L 67 (445)
++.++|..+ .+.+|||.|+..|+.++++..|..... -+|..|+ +|.||||+||+.|+++.+..|
T Consensus 214 r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~-dg~tpLH~a~r~G~~~svd~L 292 (929)
T KOG0510|consen 214 RQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDN-DGCTPLHYAARQGGPESVDNL 292 (929)
T ss_pred hhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccc-cCCchHHHHHHcCChhHHHHH
Confidence 455666655 689999999999999999988864322 2344565 799999999999999999999
Q ss_pred hcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHh-cCC-CCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhH
Q 013316 68 LEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA-HGA-FIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQ 145 (445)
Q Consensus 68 l~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~-~ga-~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~ 145 (445)
+.. |++++.++.++.||||.||++|+.++|+.|++ .|. ..+..|..|.||| |+|...++..++++|+..|+..
T Consensus 293 l~~----Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpL-Hlaa~~gH~~v~qlLl~~GA~~ 367 (929)
T KOG0510|consen 293 LGF----GASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPL-HLAAKSGHDRVVQLLLNKGALF 367 (929)
T ss_pred HHc----CCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCch-hhhhhcCHHHHHHHHHhcChhh
Confidence 995 89999999999999999999999999999997 544 4678899999999 8888999999999999999876
Q ss_pred H
Q 013316 146 R 146 (445)
Q Consensus 146 ~ 146 (445)
.
T Consensus 368 ~ 368 (929)
T KOG0510|consen 368 L 368 (929)
T ss_pred h
Confidence 6
No 155
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.71 E-value=5.5e-17 Score=170.96 Aligned_cols=150 Identities=21% Similarity=0.208 Sum_probs=129.2
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCC-cHHHHHHhhcCCCCCCcccc
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN-KAEIVKSLLEWPGNDKVELE 79 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g-~~~iv~~Ll~~~~~~g~~v~ 79 (445)
+.|++++..+ .|.||||+||..|+...+..+|...|++++..+. .|+||||+|+..| +.+++++|+.. |++++
T Consensus 261 ~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~-~g~TpLh~Aa~~g~~~~~v~~Ll~~----gadin 335 (682)
T PHA02876 261 DAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNI-KGETPLYLMAKNGYDTENIRTLIML----GADVN 335 (682)
T ss_pred HCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhCCCHHHHHHHHHc----CCCCC
Confidence 4677887766 6999999999999986555666678999999987 7999999999999 58999999985 88999
Q ss_pred cccCCCCcHHHHHHHc-CCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316 80 AQNMYGETPLHMAAKN-GCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET 157 (445)
Q Consensus 80 ~~d~~g~tpLh~A~~~-g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~ 157 (445)
.+|..|.||||+|+.. ++.+++.+|++.|++++.+|..|.||| |+|+..++.+++++|++++++.......+.++..
T Consensus 336 ~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpL-h~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh 413 (682)
T PHA02876 336 AADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPI-HYAAVRNNVVIINTLLDYGADIEALSQKIGTALH 413 (682)
T ss_pred CcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCccccCCCCCchHH
Confidence 9999999999999985 578899999999999999999999999 7788889999999999999887765544444433
No 156
>PHA02730 ankyrin-like protein; Provisional
Probab=99.70 E-value=8.8e-17 Score=162.23 Aligned_cols=141 Identities=15% Similarity=0.116 Sum_probs=115.9
Q ss_pred CCCccCccCCCCCchHhHHHHHcCC----HHHHHHHHhhCC-CCcCCCCCCCCChHHHH---HHhCC---------cHHH
Q 013316 1 MQKNQDRRSRSAKPATIHGCAQSGD----LLAFQRLLRENP-SLLNERNPVMAQTPLHV---SAGYN---------KAEI 63 (445)
Q Consensus 1 l~~~~~~~~~~~~~t~L~~A~~~g~----~~~v~~ll~~~~-~~~~~~~~~~g~tpLh~---A~~~g---------~~~i 63 (445)
++.||+.+....|.||||+|+..++ .++++.|+...+ .++|..+. .|.||||. |...+ ..++
T Consensus 366 Is~GAdIN~k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~-~G~T~Lh~~i~a~~~n~~~~~~e~~~~~i 444 (672)
T PHA02730 366 LDNGATMDKTTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSN-NGRLCMYGLILSRFNNCGYHCYETILIDV 444 (672)
T ss_pred HHCCCCCCcCCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCcccccccc-CCCchHhHHHHHHhccccccccchhHHHH
Confidence 3579999988889999999998875 799988876433 26888887 79999984 33232 2356
Q ss_pred HHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccc-CCCChhhhhhcC-CCChHHHHHHHhh
Q 013316 64 VKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-EGKTPLDHLSNG-PGSAKLRELLLWH 141 (445)
Q Consensus 64 v~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~-~g~tpl~~~a~~-~~~~~i~~~ll~~ 141 (445)
+++|+.+ |+++|.+|..|.||||+|+..++.+++++|+++||+++.++. .|.||+++++.. .++.+++++|+++
T Consensus 445 vk~LIs~----GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ 520 (672)
T PHA02730 445 FDILSKY----MDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSY 520 (672)
T ss_pred HHHHHhc----ccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHc
Confidence 9999995 899999999999999999999999999999999999999997 599999544432 4678999999999
Q ss_pred hhhHH
Q 013316 142 SEEQR 146 (445)
Q Consensus 142 ~~~~~ 146 (445)
+++..
T Consensus 521 ga~i~ 525 (672)
T PHA02730 521 HPTLE 525 (672)
T ss_pred CCCHH
Confidence 87643
No 157
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.70 E-value=7.1e-16 Score=148.90 Aligned_cols=188 Identities=21% Similarity=0.235 Sum_probs=124.0
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|++.+++.+.+++. .+..++++|+||||||||++|+++++.+.... ...+++.+++
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~----------------~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~--~~~~~~~i~~ 74 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVD----------------SPNLPHLLVQGPPGSGKTAAVRALARELYGDP--WENNFTEFNV 74 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHh----------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCcc--cccceEEech
Confidence 47789999999988887543 22345899999999999999999999886422 1225777887
Q ss_pred ccccccc-------------cCC-------chhHHHHHHHH--------ccCcEEEEcCccccccCCCCCCchhHHHHHH
Q 013316 247 TDLVGEF-------------VGH-------TGPKTRRRIKE--------AEGGILFVDEAYRLIPMQKADDKDYGIEALE 298 (445)
Q Consensus 247 ~~l~~~~-------------~g~-------~~~~~~~~~~~--------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~ 298 (445)
+++.... .+. ....++.++.. +...+|||||+|.+.+ ..++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-----------~~~~ 143 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-----------DAQQ 143 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-----------HHHH
Confidence 7653221 010 01122333222 2347999999998864 3445
Q ss_pred HHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccH
Q 013316 299 EIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSM 376 (445)
Q Consensus 299 ~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 376 (445)
.|...++. ....+|++++... . ..++|++|+ ..+.|++|+.+++..+++..+.+.. ..+++
T Consensus 144 ~L~~~le~~~~~~~~Il~~~~~~--~---~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~ 206 (337)
T PRK12402 144 ALRRIMEQYSRTCRFIIATRQPS--K---LIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEG-----------VDYDD 206 (337)
T ss_pred HHHHHHHhccCCCeEEEEeCChh--h---CchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCH
Confidence 56666553 2234444444322 1 256788897 7899999999999999998877642 24667
Q ss_pred HHHHHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316 377 DAIAALIEKETTEKQRREMNGGLVDPMLVNA 407 (445)
Q Consensus 377 ~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~ 407 (445)
+++..+.. .+ ++|.|.+.+.++.+
T Consensus 207 ~al~~l~~-~~------~gdlr~l~~~l~~~ 230 (337)
T PRK12402 207 DGLELIAY-YA------GGDLRKAILTLQTA 230 (337)
T ss_pred HHHHHHHH-Hc------CCCHHHHHHHHHHH
Confidence 78776654 43 57777777777655
No 158
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.70 E-value=1.1e-16 Score=122.67 Aligned_cols=89 Identities=40% Similarity=0.516 Sum_probs=79.2
Q ss_pred hHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcC
Q 013316 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG 96 (445)
Q Consensus 17 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g 96 (445)
||+||..|+.++++.|+. .+.+++. |.||||+|+.+|+.+++++|++. |++++.+|..|+||||+|+..|
T Consensus 1 L~~A~~~~~~~~~~~ll~-~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~ 70 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLE-KGADINL-----GNTALHYAAENGNLEIVKLLLEN----GADINSQDKNGNTALHYAAENG 70 (89)
T ss_dssp HHHHHHTTTHHHHHHHHH-TTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHT----TTCTT-BSTTSSBHHHHHHHTT
T ss_pred CHHHHHcCCHHHHHHHHH-CcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHh----cccccccCCCCCCHHHHHHHcC
Confidence 799999999999999987 5555554 67999999999999999999995 8899999999999999999999
Q ss_pred CHHHHHHHHhcCCCCcccc
Q 013316 97 CNEAAKLLLAHGAFIEAKA 115 (445)
Q Consensus 97 ~~~~~~~Ll~~ga~~~~~~ 115 (445)
+.+++++|+++|++++.+|
T Consensus 71 ~~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 71 NLEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp HHHHHHHHHHTTT-TTSS-
T ss_pred CHHHHHHHHHcCCCCCCcC
Confidence 9999999999999998875
No 159
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.70 E-value=1.7e-16 Score=164.94 Aligned_cols=102 Identities=31% Similarity=0.451 Sum_probs=88.7
Q ss_pred hHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHH
Q 013316 15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK 94 (445)
Q Consensus 15 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~ 94 (445)
..|+.|+..|+.+.++.|+. .++++|..+. .|+||||+||.+|+.+++++|+++ |++++.+|..|.||||+|+.
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~-~Gadin~~d~-~G~TpLh~Aa~~g~~eiv~~LL~~----Gadvn~~d~~G~TpLh~A~~ 157 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLT-GGADPNCRDY-DGRTPLHIACANGHVQVVRVLLEF----GADPTLLDKDGKTPLELAEE 157 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHH-CCCCCCCcCC-CCCcHHHHHHHCCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHH
Confidence 45888999999999887764 6788898886 799999999999999999999985 88899999999999999999
Q ss_pred cCCHHHHHHHHhc-------CCCCcccccCCCChh
Q 013316 95 NGCNEAAKLLLAH-------GAFIEAKANEGKTPL 122 (445)
Q Consensus 95 ~g~~~~~~~Ll~~-------ga~~~~~~~~g~tpl 122 (445)
.|+.+++++|+.+ |++++..+..|.+|+
T Consensus 158 ~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~ 192 (664)
T PTZ00322 158 NGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPS 192 (664)
T ss_pred CCcHHHHHHHHhCCCcccccCCCCCccccCCCCcc
Confidence 9999999999988 888887777777776
No 160
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=8e-16 Score=155.89 Aligned_cols=188 Identities=18% Similarity=0.258 Sum_probs=131.7
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCC---------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--------- 236 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~--------- 236 (445)
..|++++|++.+++.+.+++.. ...+..+||+||+|||||++|+.+|+.+.+....
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~---------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQ---------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 4688999999999999886542 1234458899999999999999999998764311
Q ss_pred --------CCCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316 237 --------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 301 (445)
Q Consensus 237 --------~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll 301 (445)
....++++++++ +.+...++.+.+.+ ++.|+||||+|.+.. .+++.|+
T Consensus 78 ~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~naLL 140 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNALL 140 (559)
T ss_pred HHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHHH
Confidence 112344444322 11234455655543 458999999999975 6788999
Q ss_pred hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
+.+++ ..+++|++|+.. .. ..+.+++|+ ..+.|++|+.+++...++..+++.. ..++++++
T Consensus 141 KtLEepp~~~ifIlatt~~--~k---i~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~eg-----------i~i~~~al 203 (559)
T PRK05563 141 KTLEEPPAHVIFILATTEP--HK---IPATILSRC-QRFDFKRISVEDIVERLKYILDKEG-----------IEYEDEAL 203 (559)
T ss_pred HHhcCCCCCeEEEEEeCCh--hh---CcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99986 456777776543 22 267889998 7899999999999999998887641 23455666
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
. .+...+ .|+.|.+.+.+++++.
T Consensus 204 ~-~ia~~s------~G~~R~al~~Ldq~~~ 226 (559)
T PRK05563 204 R-LIARAA------EGGMRDALSILDQAIS 226 (559)
T ss_pred H-HHHHHc------CCCHHHHHHHHHHHHH
Confidence 6 444555 4566667777777643
No 161
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.70 E-value=2.2e-17 Score=141.18 Aligned_cols=124 Identities=27% Similarity=0.380 Sum_probs=92.9
Q ss_pred hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 013316 171 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 250 (445)
Q Consensus 171 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~ 250 (445)
|+|.++.++++.+.++.+ +..+.+|||+|++||||+.+|++||..+.+ ...||+.++|+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~--------------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r----~~~pfi~vnc~~~~ 62 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA--------------ASSDLPVLITGETGTGKELLARAIHNNSPR----KNGPFISVNCAALP 62 (168)
T ss_dssp SS--SHHHHHHHHHHHHH--------------TTSTS-EEEECSTTSSHHHHHHHHHHCSTT----TTS-EEEEETTTS-
T ss_pred CEeCCHHHHHHHHHHHHH--------------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhc----ccCCeEEEehhhhh
Confidence 578899988888877766 567789999999999999999999997665 34599999999854
Q ss_pred -----ccccCCch-------hHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-----------
Q 013316 251 -----GEFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----------- 307 (445)
Q Consensus 251 -----~~~~g~~~-------~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~----------- 307 (445)
..+||+.. .....+|+.|.+|+||||||+.|.+ .+|..|++.++++
T Consensus 63 ~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~ 131 (168)
T PF00158_consen 63 EELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPP-----------ELQAKLLRVLEEGKFTRLGSDKPV 131 (168)
T ss_dssp HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-H-----------HHHHHHHHHHHHSEEECCTSSSEE
T ss_pred cchhhhhhhccccccccccccccCCceeeccceEEeecchhhhHH-----------HHHHHHHHHHhhchhccccccccc
Confidence 34677532 1234799999999999999988887 8899999999752
Q ss_pred --cEEEEEecCchhHHHH
Q 013316 308 --KVVVIFAGYSEPMKRV 323 (445)
Q Consensus 308 --~~~~i~a~~~~~~~~~ 323 (445)
++.+|++|+.+....+
T Consensus 132 ~~~~RiI~st~~~l~~~v 149 (168)
T PF00158_consen 132 PVDVRIIASTSKDLEELV 149 (168)
T ss_dssp E--EEEEEEESS-HHHHH
T ss_pred cccceEEeecCcCHHHHH
Confidence 4688888877665543
No 162
>PHA02795 ankyrin-like protein; Provisional
Probab=99.70 E-value=6.6e-17 Score=155.79 Aligned_cols=149 Identities=11% Similarity=0.008 Sum_probs=126.4
Q ss_pred CCccCcc-------CCCCCchHhHHHHH--cCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCC
Q 013316 2 QKNQDRR-------SRSAKPATIHGCAQ--SGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPG 72 (445)
Q Consensus 2 ~~~~~~~-------~~~~~~t~L~~A~~--~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~ 72 (445)
.+|++++ ..+.++|+||+++. .|+.++++.|+ .+|++++..+ +.||||+|+..++.+++++|+++
T Consensus 98 s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI-~~GADIn~~~---~~t~lh~A~~~~~~eIVk~Lls~-- 171 (437)
T PHA02795 98 SKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMV-DHGAVIYKIE---CLNAYFRGICKKESSVVEFILNC-- 171 (437)
T ss_pred hcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHH-HCCCCCCCCC---CCCHHHHHHHcCcHHHHHHHHhc--
Confidence 3566655 33468999999999 89999999777 5799998854 57999999999999999999997
Q ss_pred CCCcc-cccc-----cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHH
Q 013316 73 NDKVE-LEAQ-----NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 146 (445)
Q Consensus 73 ~~g~~-v~~~-----d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~ 146 (445)
|++ .+.. +..+.||+|.|+..++.+++++|+++||+++.+|..|.||| |+|+..++.+++++|+++|++..
T Consensus 172 --Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpL-h~Aa~~g~~eiVelLL~~GAdIN 248 (437)
T PHA02795 172 --GIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLL-YRAIYAGYIDLVSWLLENGANVN 248 (437)
T ss_pred --CCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCC
Confidence 432 2222 24578999999999999999999999999999999999999 88888999999999999999998
Q ss_pred hhhhhhhhhhhHH
Q 013316 147 KRRALEACSETKA 159 (445)
Q Consensus 147 ~~~~~~~~~~~~a 159 (445)
.++..+.++...+
T Consensus 249 ~~d~~G~TpLh~A 261 (437)
T PHA02795 249 AVMSNGYTCLDVA 261 (437)
T ss_pred CcCCCCCCHHHHH
Confidence 8887777776655
No 163
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.70 E-value=5.9e-17 Score=154.00 Aligned_cols=155 Identities=28% Similarity=0.368 Sum_probs=133.2
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCC-------
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN------- 73 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~------- 73 (445)
.+|++++..+ .|.|+||.||...+.++|++++ .++.+||..|. .||||||.|+..||..++++|+.++..
T Consensus 61 ~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~-e~ga~Vn~~d~-e~wtPlhaaascg~~~i~~~li~~gA~~~avNsd 138 (527)
T KOG0505|consen 61 NRGASPNLCNVDGLTALHQACIDDNLEMVKFLV-ENGANVNAQDN-EGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSD 138 (527)
T ss_pred ccCCCccccCCccchhHHHHHhcccHHHHHHHH-HhcCCcccccc-ccCCcchhhcccccHHHHHHHHHhhhhhhhccCC
Confidence 4567777777 7999999999999999999777 57999999998 799999999999999999999998541
Q ss_pred ------------------------------------------------CCcccccccCCCCcHHHHHHHcCCHHHHHHHH
Q 013316 74 ------------------------------------------------DKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 105 (445)
Q Consensus 74 ------------------------------------------------~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll 105 (445)
.|...++.+..|-|.||+|+..|..++..+|+
T Consensus 139 g~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl 218 (527)
T KOG0505|consen 139 GNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLL 218 (527)
T ss_pred CCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHH
Confidence 12222333344899999999999999999999
Q ss_pred hcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316 106 AHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA 159 (445)
Q Consensus 106 ~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a 159 (445)
.+|.+++++|.+||||| |+++.++..+++++|..++++....+..+.++....
T Consensus 219 ~ag~~~~~~D~dgWtPl-HAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~ 271 (527)
T KOG0505|consen 219 QAGYSVNIKDYDGWTPL-HAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVA 271 (527)
T ss_pred HhccCcccccccCCCcc-cHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccch
Confidence 99999999999999999 999999999999999999999888877666665433
No 164
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.70 E-value=3e-17 Score=148.49 Aligned_cols=125 Identities=23% Similarity=0.311 Sum_probs=111.5
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhC-----CcHHHHHHhhcCCCCCCccccccc-CC
Q 013316 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGY-----NKAEIVKSLLEWPGNDKVELEAQN-MY 84 (445)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~-----g~~~iv~~Ll~~~~~~g~~v~~~d-~~ 84 (445)
..|+|+|||++.++|+++|+.||....++++.++. -|.||+++|+.. .+.++|.-|.++ .|||++- ..
T Consensus 266 sNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNr-AGYtpiMLaALA~lk~~~d~~vV~~LF~m-----gnVNaKAsQ~ 339 (452)
T KOG0514|consen 266 SNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNR-AGYTPVMLAALAKLKQPADRTVVERLFKM-----GDVNAKASQH 339 (452)
T ss_pred CCCCeeeeeeecccchHHHHHHhccCccccccccc-ccccHHHHHHHHhhcchhhHHHHHHHHhc-----cCcchhhhhh
Confidence 37999999999999999999999999999999997 799999998643 356788888886 4788764 45
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhh
Q 013316 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS 142 (445)
Q Consensus 85 g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~ 142 (445)
|+|+|++|+.+|+.++|+.|+.+|||+|++|.+|.|+| .+|+..|+.+++++|+..-
T Consensus 340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTAL-MCA~EHGhkEivklLLA~p 396 (452)
T KOG0514|consen 340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTAL-MCAAEHGHKEIVKLLLAVP 396 (452)
T ss_pred cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHH-hhhhhhChHHHHHHHhccC
Confidence 99999999999999999999999999999999999999 9999999999999998655
No 165
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=9.1e-16 Score=155.10 Aligned_cols=187 Identities=18% Similarity=0.191 Sum_probs=129.8
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCC-----CC--
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL-----PT-- 238 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~-----~~-- 238 (445)
..|++++|++.+++.|.+++.. ...+..+||+||+|||||++|+++|+.+.+.+.. ..
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~---------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQ---------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 4688899999999999886542 1234456999999999999999999999763210 00
Q ss_pred ---------------CCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHH
Q 013316 239 ---------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEA 296 (445)
Q Consensus 239 ---------------~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~ 296 (445)
..+++++.++- ..-..++++++.+ ++.|++|||+|.+.. ..
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~-----------~a 140 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN-----------TA 140 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH-----------HH
Confidence 01223322210 1223566666543 357999999999986 67
Q ss_pred HHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcc
Q 013316 297 LEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC 374 (445)
Q Consensus 297 ~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~ 374 (445)
++.|++.+++ ..+++|++|+.... + -+.+++|+ ..++|..++.+++.+.++..+.+.. ..+
T Consensus 141 ~NaLLKtLEEPP~~~~fIL~Ttd~~k--i---l~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~eg-----------i~i 203 (618)
T PRK14951 141 FNAMLKTLEEPPEYLKFVLATTDPQK--V---PVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAEN-----------VPA 203 (618)
T ss_pred HHHHHHhcccCCCCeEEEEEECCchh--h---hHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcC-----------CCC
Confidence 8999999987 55677776654332 2 45689998 9999999999999999998887642 245
Q ss_pred cHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316 375 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNAR 408 (445)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~ 408 (445)
+++++..++ ..+ .|+.|.+.+++++++
T Consensus 204 e~~AL~~La-~~s------~GslR~al~lLdq~i 230 (618)
T PRK14951 204 EPQALRLLA-RAA------RGSMRDALSLTDQAI 230 (618)
T ss_pred CHHHHHHHH-HHc------CCCHHHHHHHHHHHH
Confidence 666776444 555 455666667777664
No 166
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=7.3e-16 Score=154.68 Aligned_cols=186 Identities=20% Similarity=0.266 Sum_probs=126.0
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC-------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 238 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~------- 238 (445)
..|++|+|++.+++.|.+.+.. ...+..+||+||||||||++|+.+|+.+.+......
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~---------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQE---------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 4678899999999888886542 223568999999999999999999999976321111
Q ss_pred ----------CCeEEeecccccccccCCchhHHHHH---HH----HccCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316 239 ----------DRVTEVQRTDLVGEFVGHTGPKTRRR---IK----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 301 (445)
Q Consensus 239 ----------~~~~~~~~~~l~~~~~g~~~~~~~~~---~~----~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll 301 (445)
..+++++.+.- . .-..++.+ +. .....||||||+|.+.. ..++.|+
T Consensus 78 sC~~i~~g~hpDv~eId~a~~----~--~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-----------~a~naLL 140 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGASN----R--GIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-----------EAFNALL 140 (624)
T ss_pred HHHHHhcCCCCceEEEecccc----c--CHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH-----------HHHHHHH
Confidence 11333332210 0 11222332 22 12457999999999975 6789999
Q ss_pred hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
+.|++ ..+++|++++..... .+.+++|+ ..+.|++++.+++..++...+.+.. ..++.+++
T Consensus 141 k~LEEP~~~~ifILaTt~~~kl-----l~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~eg-----------i~id~eal 203 (624)
T PRK14959 141 KTLEEPPARVTFVLATTEPHKF-----PVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREG-----------VDYDPAAV 203 (624)
T ss_pred HHhhccCCCEEEEEecCChhhh-----hHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99986 567777776643322 35688998 7899999999999999998776531 24566676
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNA 407 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~ 407 (445)
. ++...+ .|+.|.+.++++++
T Consensus 204 ~-lIA~~s------~GdlR~Al~lLeql 224 (624)
T PRK14959 204 R-LIARRA------AGSVRDSMSLLGQV 224 (624)
T ss_pred H-HHHHHc------CCCHHHHHHHHHHH
Confidence 6 455565 35556666666654
No 167
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.69 E-value=9.7e-16 Score=155.19 Aligned_cols=222 Identities=18% Similarity=0.185 Sum_probs=142.3
Q ss_pred hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCee-EeecCCCCchhHHHHHHHHHHHHc---CCCCCCCeEEee
Q 013316 170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHM-AFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTEVQ 245 (445)
Q Consensus 170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v-ll~Gp~GtGKt~~A~~la~~~~~~---~~~~~~~~~~~~ 245 (445)
.|.|.++-.++|...+.... ....+.++ +++|+||||||++++.+.+.+... ..+....++.++
T Consensus 756 ~LPhREeEIeeLasfL~paI------------kgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN 823 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGI------------KQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN 823 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHH------------hcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe
Confidence 47888888888877665442 11234454 699999999999999999888532 122223678899
Q ss_pred cccccc----------cccCC-------chhHHHHHHHHc----c-CcEEEEcCccccccCCCCCCchhHHHHHHHHHhh
Q 013316 246 RTDLVG----------EFVGH-------TGPKTRRRIKEA----E-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV 303 (445)
Q Consensus 246 ~~~l~~----------~~~g~-------~~~~~~~~~~~a----~-~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~ 303 (445)
|..+.. +++|. +...+..+|... . ..||+|||||.|..+++ +++-.|+..
T Consensus 824 Cm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~Q--------DVLYnLFR~ 895 (1164)
T PTZ00112 824 GMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQ--------KVLFTLFDW 895 (1164)
T ss_pred CCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHH--------HHHHHHHHH
Confidence 854321 22222 123344555543 1 25999999999987432 444444443
Q ss_pred c--cCCcEEEEEecCchhHHHHHhhCcccccccc-cceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHH
Q 013316 304 M--DGGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 380 (445)
Q Consensus 304 ~--~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 380 (445)
. ...++++|+.++...+ ....+|.+++||. ..|.|++|+.+|+.+||+..+... ...++++++.
T Consensus 896 ~~~s~SKLiLIGISNdlDL--perLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A-----------~gVLdDdAIE 962 (1164)
T PTZ00112 896 PTKINSKLVLIAISNTMDL--PERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC-----------KEIIDHTAIQ 962 (1164)
T ss_pred hhccCCeEEEEEecCchhc--chhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC-----------CCCCCHHHHH
Confidence 2 2467888887764332 2234789999986 458999999999999999988753 1235666665
Q ss_pred HHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316 381 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440 (445)
Q Consensus 381 ~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 440 (445)
+++... ....|++|.+-.++++|.+. + +...|+.+||.+|+..+
T Consensus 963 -LIArkV---Aq~SGDARKALDILRrAgEi---k---------egskVT~eHVrkAleei 1006 (1164)
T PTZ00112 963 -LCARKV---ANVSGDIRKALQICRKAFEN---K---------RGQKIVPRDITEATNQL 1006 (1164)
T ss_pred -HHHHhh---hhcCCHHHHHHHHHHHHHhh---c---------CCCccCHHHHHHHHHHH
Confidence 554422 12246666667777777432 0 11278999999998764
No 168
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.69 E-value=1.5e-16 Score=136.80 Aligned_cols=114 Identities=23% Similarity=0.144 Sum_probs=96.6
Q ss_pred CccCccCC-CCCchHhHHHHHcCCHHH---HHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccc
Q 013316 3 KNQDRRSR-SAKPATIHGCAQSGDLLA---FQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL 78 (445)
Q Consensus 3 ~~~~~~~~-~~~~t~L~~A~~~g~~~~---v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v 78 (445)
.|+..+.. ..|+||||+||..|+.+. ++. |...|+++|.++...|+||||+|+..++.+++++|+.. .|+++
T Consensus 46 ~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~-Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~---~gad~ 121 (166)
T PHA02743 46 DGHLLHRYDHHGRQCTHMVAWYDRANAVMKIEL-LVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQ---LGVNL 121 (166)
T ss_pred cchhhhccCCCCCcHHHHHHHhCccCHHHHHHH-HHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhc---cCCCc
Confidence 34555543 469999999999988665 444 44678999998733699999999999999999999952 38899
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCC
Q 013316 79 EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKT 120 (445)
Q Consensus 79 ~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~t 120 (445)
+.++..|.||||+|+..++.+++++|+.+|++++.++..|.+
T Consensus 122 ~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~ 163 (166)
T PHA02743 122 GAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS 163 (166)
T ss_pred cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence 999999999999999999999999999999999999887754
No 169
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1.1e-15 Score=152.43 Aligned_cols=186 Identities=18% Similarity=0.237 Sum_probs=127.8
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCC---------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--------- 236 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~--------- 236 (445)
..|++++|++.++..|..++.. ...+..+||+||||||||++|+++++.+.+.+..
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~---------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQ---------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 3578899999999999886542 1233345999999999999999999999763321
Q ss_pred -------CCCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHh
Q 013316 237 -------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS 302 (445)
Q Consensus 237 -------~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~ 302 (445)
....+.+++.++- ..-..++.+.+.+ ...||+|||+|.+.. ..++.|++
T Consensus 76 c~~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~-----------~a~naLLk 138 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK-----------SAFNALLK 138 (504)
T ss_pred hHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECccccCH-----------HHHHHHHH
Confidence 1112444443311 1223344443322 447999999988754 67888999
Q ss_pred hccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHH
Q 013316 303 VMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 380 (445)
Q Consensus 303 ~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 380 (445)
.++. ..+++|++++... . ..+.+++|+ ..++|++|+.+++...+...+.+.. ..++++++.
T Consensus 139 ~LEep~~~t~~Il~t~~~~--k---l~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~eg-----------i~i~~~Al~ 201 (504)
T PRK14963 139 TLEEPPEHVIFILATTEPE--K---MPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEG-----------REAEPEALQ 201 (504)
T ss_pred HHHhCCCCEEEEEEcCChh--h---CChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHH
Confidence 9986 4566666654332 2 267888998 7899999999999999999887642 234666766
Q ss_pred HHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316 381 ALIEKETTEKQRREMNGGLVDPMLVNA 407 (445)
Q Consensus 381 ~~~~~~~~~~~~~~~n~r~l~~~~~~~ 407 (445)
.+ ...+ .|+.|.+.+.++++
T Consensus 202 ~i-a~~s------~GdlR~aln~Lekl 221 (504)
T PRK14963 202 LV-ARLA------DGAMRDAESLLERL 221 (504)
T ss_pred HH-HHHc------CCCHHHHHHHHHHH
Confidence 44 4555 46667777778776
No 170
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.69 E-value=1.1e-16 Score=162.30 Aligned_cols=140 Identities=16% Similarity=0.191 Sum_probs=109.3
Q ss_pred CCCccCccCCCCCchHhHHHHHc--CCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCC------cHHHHHHhhcCCC
Q 013316 1 MQKNQDRRSRSAKPATIHGCAQS--GDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN------KAEIVKSLLEWPG 72 (445)
Q Consensus 1 l~~~~~~~~~~~~~t~L~~A~~~--g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g------~~~iv~~Ll~~~~ 72 (445)
++.|++++....|.||||+++.. ++.++++.|+. .|+++|..+ .+.||||.|+.++ +.+++++|+++
T Consensus 23 L~~GadvN~~~~g~t~l~~~~~~~~~~~~iv~~Ll~-~GAdvn~~~--~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~-- 97 (494)
T PHA02989 23 LRTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLID-NGADVNYKG--YIETPLCAVLRNREITSNKIKKIVKLLLKF-- 97 (494)
T ss_pred HHcCCCcccccCCCCHHHHHHhcCCCChHHHHHHHH-cCCCccCCC--CCCCcHHHHHhccCcchhhHHHHHHHHHHC--
Confidence 36788888887788888766554 36788876664 688888876 3789999887654 46789999985
Q ss_pred CCCcccccccCCCCcHHHHHHHc---CCHHHHHHHHhcCCCC-cccccCCCChhhhhhc-CCCChHHHHHHHhhhhhHHh
Q 013316 73 NDKVELEAQNMYGETPLHMAAKN---GCNEAAKLLLAHGAFI-EAKANEGKTPLDHLSN-GPGSAKLRELLLWHSEEQRK 147 (445)
Q Consensus 73 ~~g~~v~~~d~~g~tpLh~A~~~---g~~~~~~~Ll~~ga~~-~~~~~~g~tpl~~~a~-~~~~~~i~~~ll~~~~~~~~ 147 (445)
|+++|.+|..|.||||.|+.. ++.+++++|+++||++ +.+|..|+||||+++. ..++.+++++|+++|+++..
T Consensus 98 --Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~ 175 (494)
T PHA02989 98 --GADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFE 175 (494)
T ss_pred --CCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc
Confidence 888999999999999987654 6788999999999999 7888999999944332 34678899999999887665
No 171
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1.1e-15 Score=153.72 Aligned_cols=188 Identities=18% Similarity=0.212 Sum_probs=130.7
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC-----
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR----- 240 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~----- 240 (445)
..|++++|++.+++.+..++.. ...+..+||+||||||||++|+.+|+.+.+.......+
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~---------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQ---------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc---------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 4688899999999988886542 12334468999999999999999999997632211111
Q ss_pred ------------eEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316 241 ------------VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 301 (445)
Q Consensus 241 ------------~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll 301 (445)
+++++.+. ...-..++++++.+ +..|+||||+|.+.. .+++.|+
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-----------~a~naLL 140 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-----------SAFNAML 140 (527)
T ss_pred HHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-----------HHHHHHH
Confidence 22222211 01233456666544 347999999998876 6789999
Q ss_pred hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
+.+++ +.+++|++|+.... + -+.+++|| ..++|+.++.+++.+.+...+.+.. ..++.+++
T Consensus 141 K~LEepp~~~~fIL~t~d~~k--i---l~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~eg-----------i~~~~~al 203 (527)
T PRK14969 141 KTLEEPPEHVKFILATTDPQK--I---PVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQEN-----------IPFDATAL 203 (527)
T ss_pred HHHhCCCCCEEEEEEeCChhh--C---chhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 56778877755332 2 35689998 9999999999999999998887641 23455666
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
. ++...+ .|+.|.+.+++++++.
T Consensus 204 ~-~la~~s------~Gslr~al~lldqai~ 226 (527)
T PRK14969 204 Q-LLARAA------AGSMRDALSLLDQAIA 226 (527)
T ss_pred H-HHHHHc------CCCHHHHHHHHHHHHH
Confidence 5 444555 4566777778887744
No 172
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=1.2e-15 Score=159.57 Aligned_cols=187 Identities=19% Similarity=0.194 Sum_probs=128.2
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 237 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~-------- 237 (445)
..|++|+|++.+++.|+..+.. ...+..+||+||+|||||++|+.|++.+.+...-.
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~---------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDS---------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh---------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 3678899999999998886542 12333479999999999999999999997632100
Q ss_pred -----------CCCeEEeecccccccccCCchhHHHHHHHH-------ccCcEEEEcCccccccCCCCCCchhHHHHHHH
Q 013316 238 -----------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEE 299 (445)
Q Consensus 238 -----------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~-------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ 299 (445)
...|++++.++.. .-..++++.+. ..+.|+||||+|.|.. ..++.
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~~------~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~Na 139 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASHG------GVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGFNA 139 (824)
T ss_pred HHHHHHcCCCCCCcEEEecccccC------CHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHHHH
Confidence 1123333321110 12233443322 2458999999999986 78899
Q ss_pred HHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHH
Q 013316 300 IMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD 377 (445)
Q Consensus 300 ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 377 (445)
||+.|++ ..+++|++++.... + -+.|++|+ .++.|..++.+++...|...+++.. ..++.+
T Consensus 140 LLK~LEEpP~~~~fIl~tt~~~k--L---l~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EG-----------v~id~e 202 (824)
T PRK07764 140 LLKIVEEPPEHLKFIFATTEPDK--V---IGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEG-----------VPVEPG 202 (824)
T ss_pred HHHHHhCCCCCeEEEEEeCChhh--h---hHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcC-----------CCCCHH
Confidence 9999997 66777777654332 2 46789998 8999999999999999998887642 234556
Q ss_pred HHHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316 378 AIAALIEKETTEKQRREMNGGLVDPMLVNAR 408 (445)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~ 408 (445)
++. ++...+ .++.|.+.+++++.+
T Consensus 203 al~-lLa~~s------gGdlR~Al~eLEKLi 226 (824)
T PRK07764 203 VLP-LVIRAG------GGSVRDSLSVLDQLL 226 (824)
T ss_pred HHH-HHHHHc------CCCHHHHHHHHHHHH
Confidence 666 444555 345566667777664
No 173
>PRK04195 replication factor C large subunit; Provisional
Probab=99.69 E-value=9.5e-16 Score=153.99 Aligned_cols=176 Identities=19% Similarity=0.313 Sum_probs=120.2
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.+++++|++.++..+.+|+.... ...++.++||+||||||||++|+++|+.++. .++++++
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~------------~g~~~~~lLL~GppG~GKTtla~ala~el~~-------~~ielna 72 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWL------------KGKPKKALLLYGPPGVGKTSLAHALANDYGW-------EVIELNA 72 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHh------------cCCCCCeEEEECCCCCCHHHHHHHHHHHcCC-------CEEEEcc
Confidence 57789999999999999876442 1234678999999999999999999999865 7888888
Q ss_pred ccccccccCCchhHHHHHHHH---------ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316 247 TDLVGEFVGHTGPKTRRRIKE---------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 317 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~---------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~ 317 (445)
++.... ..+..++.. ..+.||+|||+|.+....+ ...++.|+..++.....+|++++.
T Consensus 73 sd~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-------~~~~~aL~~~l~~~~~~iIli~n~ 139 (482)
T PRK04195 73 SDQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-------RGGARAILELIKKAKQPIILTAND 139 (482)
T ss_pred cccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-------hhHHHHHHHHHHcCCCCEEEeccC
Confidence 764321 122222211 2457999999999976321 134566667776655444554432
Q ss_pred hhHHHHHhhCc-ccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316 318 EPMKRVIASNE-GFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 392 (445)
Q Consensus 318 ~~~~~~~~~~~-~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 392 (445)
. .. ..+ .|++|+ ..|.|++|+.+++..+++..+.+.. ..++++++..++ ..++||+|
T Consensus 140 ~-~~----~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~eg-----------i~i~~eaL~~Ia-~~s~GDlR 197 (482)
T PRK04195 140 P-YD----PSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEG-----------IECDDEALKEIA-ERSGGDLR 197 (482)
T ss_pred c-cc----cchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHH-HHcCCCHH
Confidence 2 11 133 567776 8899999999999999999887642 245667777555 44544443
No 174
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.69 E-value=5.5e-17 Score=137.00 Aligned_cols=128 Identities=18% Similarity=0.200 Sum_probs=112.1
Q ss_pred CccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCC
Q 013316 6 DRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY 84 (445)
Q Consensus 6 ~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~ 84 (445)
..|..+ .|.|||.||+.+|+++.|+.|| ..|+++..... ...++|.+|+..|..+||++||.. +.|+|.-|.+
T Consensus 152 ~VN~~De~GfTpLiWAaa~G~i~vV~fLL-~~GAdp~~lgk-~resALsLAt~ggytdiV~lLL~r----~vdVNvyDwN 225 (296)
T KOG0502|consen 152 KVNACDEFGFTPLIWAAAKGHIPVVQFLL-NSGADPDALGK-YRESALSLATRGGYTDIVELLLTR----EVDVNVYDWN 225 (296)
T ss_pred cccCccccCchHhHHHHhcCchHHHHHHH-HcCCChhhhhh-hhhhhHhHHhcCChHHHHHHHHhc----CCCcceeccC
Confidence 455555 6999999999999999998777 56899988876 577999999999999999999995 8899999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHh
Q 013316 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLW 140 (445)
Q Consensus 85 g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~ 140 (445)
|-|||.+|++.++.+|++.|+..||+++..+..|.+++ -.|...++..+.+++.+
T Consensus 226 GgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~m-dlAValGyr~Vqqvie~ 280 (296)
T KOG0502|consen 226 GGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIM-DLAVALGYRIVQQVIEK 280 (296)
T ss_pred CCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHH-HHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999 66777777744444433
No 175
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.68 E-value=2.4e-17 Score=144.60 Aligned_cols=136 Identities=26% Similarity=0.321 Sum_probs=120.1
Q ss_pred HHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCC
Q 013316 18 HGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC 97 (445)
Q Consensus 18 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~ 97 (445)
+.-|+.|+.-.|+..|.....+.|.-|+ .|-+||||||..||..+++.|+.. |+.+|..+....||||+|+.+|+
T Consensus 5 f~wcregna~qvrlwld~tehdln~gdd-hgfsplhwaakegh~aivemll~r----garvn~tnmgddtplhlaaahgh 79 (448)
T KOG0195|consen 5 FGWCREGNAFQVRLWLDDTEHDLNVGDD-HGFSPLHWAAKEGHVAIVEMLLSR----GARVNSTNMGDDTPLHLAAAHGH 79 (448)
T ss_pred hhhhhcCCeEEEEEEecCcccccccccc-cCcchhhhhhhcccHHHHHHHHhc----ccccccccCCCCcchhhhhhccc
Confidence 4446677766666667777788888887 799999999999999999999984 89999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316 98 NEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA 159 (445)
Q Consensus 98 ~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a 159 (445)
-++|..|++..+|+|+.|..|+||| |+|+..++..+.+-|++.|+....-++.+.++..++
T Consensus 80 rdivqkll~~kadvnavnehgntpl-hyacfwgydqiaedli~~ga~v~icnk~g~tpldka 140 (448)
T KOG0195|consen 80 RDIVQKLLSRKADVNAVNEHGNTPL-HYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA 140 (448)
T ss_pred HHHHHHHHHHhcccchhhccCCCch-hhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence 9999999999999999999999999 899999999999999999988777776666665543
No 176
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.68 E-value=1.3e-15 Score=138.37 Aligned_cols=178 Identities=14% Similarity=0.177 Sum_probs=120.3
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHH-HccCcEEEEcCccccc
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-EAEGGILFVDEAYRLI 282 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~-~a~~~il~lDEid~l~ 282 (445)
....+++|+||||||||++|+++++.+...+. .++.+++..+... +. ...+.+|+|||+|.+.
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~----~~~~i~~~~~~~~------------~~~~~~~~~liiDdi~~l~ 103 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGR----NARYLDAASPLLA------------FDFDPEAELYAVDDVERLD 103 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC----cEEEEehHHhHHH------------HhhcccCCEEEEeChhhcC
Confidence 34568999999999999999999998865332 7777777665321 11 1245799999999886
Q ss_pred cCCCCCCchhHHHHHHHHHhhcc----CCcEEEEEecCchhHHHHHhhCccccccc--ccceeCCCCCHHHHHHHHHHHH
Q 013316 283 PMQKADDKDYGIEALEEIMSVMD----GGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKM 356 (445)
Q Consensus 283 ~~~~~~~~~~~~~~~~~ll~~~~----~~~~~~i~a~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l 356 (445)
+ ..+..|...++ .+..++|++++..+... ...+.|++|| ...+.+|+|+.+++..++....
T Consensus 104 ~-----------~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~--~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 104 D-----------AQQIALFNLFNRVRAHGQGALLVAGPAAPLAL--PLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred c-----------hHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhC--CCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 4 22333444442 34444555555433221 1257788888 4689999999999888888766
Q ss_pred hcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHH
Q 013316 357 NNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAG 436 (445)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a 436 (445)
.+. ...++++++..+.. .| ++|.++++++++..... +. .....||...++++
T Consensus 171 ~~~-----------~v~l~~~al~~L~~-~~------~gn~~~l~~~l~~l~~~-~~---------~~~~~i~~~~~~~~ 222 (227)
T PRK08903 171 AER-----------GLQLADEVPDYLLT-HF------RRDMPSLMALLDALDRY-SL---------EQKRPVTLPLLREM 222 (227)
T ss_pred HHc-----------CCCCCHHHHHHHHH-hc------cCCHHHHHHHHHHHHHH-HH---------HhCCCCCHHHHHHH
Confidence 543 23566778776665 67 89999999999986321 11 11236888888877
Q ss_pred HH
Q 013316 437 LK 438 (445)
Q Consensus 437 ~~ 438 (445)
++
T Consensus 223 l~ 224 (227)
T PRK08903 223 LA 224 (227)
T ss_pred Hh
Confidence 65
No 177
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.68 E-value=1e-16 Score=157.10 Aligned_cols=175 Identities=19% Similarity=0.259 Sum_probs=135.5
Q ss_pred CCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc-----ccccccCCchhHHH--------HHHHHcc
Q 013316 203 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD-----LVGEFVGHTGPKTR--------RRIKEAE 269 (445)
Q Consensus 203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~-----l~~~~~g~~~~~~~--------~~~~~a~ 269 (445)
.....++++.|+|||||..+||+||+.+.. .+||+.++|.. +.+++||+.+.... ..+++|.
T Consensus 333 ~~~~~pvll~GEtGtGKe~laraiH~~s~~-----~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~ 407 (606)
T COG3284 333 AATDLPVLLQGETGTGKEVLARAIHQNSEA-----AGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQAD 407 (606)
T ss_pred hhcCCCeEecCCcchhHHHHHHHHHhcccc-----cCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecC
Confidence 345679999999999999999999998763 55999999987 44668888544433 3678889
Q ss_pred CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc------------EEEEEecCchhHHHHHhh--Ccccccccc
Q 013316 270 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK------------VVVIFAGYSEPMKRVIAS--NEGFCRRVT 335 (445)
Q Consensus 270 ~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~------------~~~i~a~~~~~~~~~~~~--~~~l~~R~~ 335 (445)
+|+||+||| ++++..+|..||+.++++. |.||.||+.+....+.+. ...|..|+.
T Consensus 408 gGtlFldeI-----------gd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~ 476 (606)
T COG3284 408 GGTLFLDEI-----------GDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLN 476 (606)
T ss_pred CCccHHHHh-----------hhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhc
Confidence 999999999 6777799999999998743 577777776655433211 144555774
Q ss_pred -cceeCCCCC-HHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316 336 -KFFHFNDFN-SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNA 407 (445)
Q Consensus 336 -~~i~~~~~~-~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~ 407 (445)
..|.+|++. ..|....+.+++.+... -..+++.+++..+.++.| |||.|+|.++++.+
T Consensus 477 ~~~i~lP~lr~R~d~~~~l~~~~~~~~~--------~~~~l~~~~~~~l~~~~W------PGNirel~~v~~~~ 536 (606)
T COG3284 477 AFVITLPPLRERSDRIPLLDRILKREND--------WRLQLDDDALARLLAYRW------PGNIRELDNVIERL 536 (606)
T ss_pred CeeeccCchhcccccHHHHHHHHHHccC--------CCccCCHHHHHHHHhCCC------CCcHHHHHHHHHHH
Confidence 778888887 56777777777777643 134677889999998888 99999999999988
No 178
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.68 E-value=1.4e-15 Score=145.43 Aligned_cols=177 Identities=21% Similarity=0.225 Sum_probs=114.4
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
..+++++|++.++..+..++.. ...+..++|+||||+|||++|+++++.++. ++..++
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~-------~~~~i~ 75 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKK---------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGA-------EVLFVN 75 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhc---------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-------cceEec
Confidence 3578899999999988886541 223445666999999999999999998754 677777
Q ss_pred cccccccccCCchhHHHHHHHH----ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchh
Q 013316 246 RTDLVGEFVGHTGPKTRRRIKE----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP 319 (445)
Q Consensus 246 ~~~l~~~~~g~~~~~~~~~~~~----a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~ 319 (445)
+++ +. .......+...... +.+.||||||+|.+... +.+..|...++. +...+|++++...
T Consensus 76 ~~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~----------~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 76 GSD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA----------DAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred cCc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH----------HHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 765 11 11111112111111 24689999999988431 234445555553 4455666654332
Q ss_pred HHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHH
Q 013316 320 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 387 (445)
Q Consensus 320 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 387 (445)
. ..|++++|| ..+.|+.|+.+++.+++..++..........+ ..++++++..+....+
T Consensus 143 --~---l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~----~~i~~~al~~l~~~~~ 200 (316)
T PHA02544 143 --G---IIEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEG----VEVDMKVLAALVKKNF 200 (316)
T ss_pred --h---chHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHhcC
Confidence 2 268899999 68999999999999888876665432222222 2456678787776554
No 179
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.3e-15 Score=141.83 Aligned_cols=191 Identities=19% Similarity=0.332 Sum_probs=134.4
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccCCch-hHHHHHHHHc-------cCcEEEEc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTG-PKTRRRIKEA-------EGGILFVD 276 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~-~~g~~~-~~~~~~~~~a-------~~~il~lD 276 (445)
..+||+.||+|+|||++|+.||+.++. ||.-.+|+.|... |+|+.- .-+.+++..| +.||+|||
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldV-------PfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflD 298 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDV-------PFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLD 298 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCC-------CeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEe
Confidence 458999999999999999999999988 9999999998654 999854 3445665444 66999999
Q ss_pred CccccccCCCCC--Cch-hHHHHHHHHHhhccC-----------------------CcEEEEEecCchhHHHHHhhC---
Q 013316 277 EAYRLIPMQKAD--DKD-YGIEALEEIMSVMDG-----------------------GKVVVIFAGYSEPMKRVIASN--- 327 (445)
Q Consensus 277 Eid~l~~~~~~~--~~~-~~~~~~~~ll~~~~~-----------------------~~~~~i~a~~~~~~~~~~~~~--- 327 (445)
|+|+|..+..+- ..+ .+.-+|..||+.+++ .+|.+|+.+.-..++.++...
T Consensus 299 EvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d 378 (564)
T KOG0745|consen 299 EVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDD 378 (564)
T ss_pred hhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcc
Confidence 999998543321 122 234577889998875 125666655433333322111
Q ss_pred ------------------------------------------------cccccccccceeCCCCCHHHHHHHHH----HH
Q 013316 328 ------------------------------------------------EGFCRRVTKFFHFNDFNSEELAKILH----IK 355 (445)
Q Consensus 328 ------------------------------------------------~~l~~R~~~~i~~~~~~~~~~~~il~----~~ 355 (445)
|.|-.||+..+.|..++.+++..+|. ..
T Consensus 379 ~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL 458 (564)
T KOG0745|consen 379 KSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNAL 458 (564)
T ss_pred hhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhH
Confidence 88999999999999999999999983 23
Q ss_pred HhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 356 MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
+.++..-+...++.+ .++.+++..+..... .|..| +|-||.++|++.-
T Consensus 459 ~~Qyk~lf~~~nV~L--~fTe~Al~~IAq~Al---~r~TG-ARgLRsIlE~~Ll 506 (564)
T KOG0745|consen 459 GKQYKKLFGMDNVEL--HFTEKALEAIAQLAL---KRKTG-ARGLRSILESLLL 506 (564)
T ss_pred HHHHHHHhccCCeeE--EecHHHHHHHHHHHH---hhccc-hHHHHHHHHHHHh
Confidence 334333333344443 678888885554433 23445 8999999999844
No 180
>PHA02917 ankyrin-like protein; Provisional
Probab=99.67 E-value=2.7e-16 Score=162.33 Aligned_cols=153 Identities=14% Similarity=0.114 Sum_probs=97.6
Q ss_pred CccCccC-CCCCchHhHHHHHc---CCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHH----HHHHhhcCCC--
Q 013316 3 KNQDRRS-RSAKPATIHGCAQS---GDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAE----IVKSLLEWPG-- 72 (445)
Q Consensus 3 ~~~~~~~-~~~~~t~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~----iv~~Ll~~~~-- 72 (445)
.|+..+. ...|.||||+||.. |+.++++.||. .|++++..+. .|+||||+|+..|+.+ ++++|++..+
T Consensus 21 ~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~-~ga~v~~~~~-~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~ 98 (661)
T PHA02917 21 DRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLD-SGTNPLHKNW-RQLTPLEEYTNSRHVKVNKDIAMALLEATGYS 98 (661)
T ss_pred ccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHH-CCCCccccCC-CCCCHHHHHHHcCChhHHHHHHHHHHhccCCC
Confidence 4455555 34689999997665 78999988775 6888888886 7999999888776632 3344443210
Q ss_pred -------------------------CCCcccccccCCCCcHHHHHH--HcCCHHHHHHHHhcCCCCccccc---CC----
Q 013316 73 -------------------------NDKVELEAQNMYGETPLHMAA--KNGCNEAAKLLLAHGAFIEAKAN---EG---- 118 (445)
Q Consensus 73 -------------------------~~g~~v~~~d~~g~tpLh~A~--~~g~~~~~~~Ll~~ga~~~~~~~---~g---- 118 (445)
..|+++|.+|..|.||||.++ ..|+.+++++|+++||+++.+|. .|
T Consensus 99 n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~ 178 (661)
T PHA02917 99 NINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYD 178 (661)
T ss_pred CCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccc
Confidence 036677777777777777432 45677777777777777765442 22
Q ss_pred -------CChhhhhhc----------CCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316 119 -------KTPLDHLSN----------GPGSAKLRELLLWHSEEQRKRRALEACSET 157 (445)
Q Consensus 119 -------~tpl~~~a~----------~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~ 157 (445)
.||||+++. ..++.+++++|+++|++.+.++..+.++..
T Consensus 179 ~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh 234 (661)
T PHA02917 179 DYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQ 234 (661)
T ss_pred cccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHH
Confidence 477743332 134567777777777776665544444443
No 181
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=2.7e-15 Score=152.76 Aligned_cols=188 Identities=21% Similarity=0.230 Sum_probs=130.6
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 237 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~-------- 237 (445)
..|++|+|++.+++.|...+.. ...+..+||+||+|||||++|+.+++.+.+.....
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~---------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~ 77 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDT---------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP 77 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence 4688999999999998886542 12344579999999999999999999987632211
Q ss_pred ---------CCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316 238 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 301 (445)
Q Consensus 238 ---------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll 301 (445)
...+++++.++- ..-..++.+.+.+ ++.|++|||+|.+.. ..++.|+
T Consensus 78 ~c~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-----------~a~naLL 140 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-----------NAFNALL 140 (576)
T ss_pred HHHHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-----------HHHHHHH
Confidence 112333332211 1223445554432 457999999999986 6789999
Q ss_pred hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
+.|++ ..+++|++|+... .+ -+.+++|+ ..+.|..++.+++...+...+++.. ..++.+++
T Consensus 141 k~LEepp~~~~fIl~t~~~~--kl---~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~eg-----------i~i~~~al 203 (576)
T PRK14965 141 KTLEEPPPHVKFIFATTEPH--KV---PITILSRC-QRFDFRRIPLQKIVDRLRYIADQEG-----------ISISDAAL 203 (576)
T ss_pred HHHHcCCCCeEEEEEeCChh--hh---hHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhC-----------CCCCHHHH
Confidence 99987 5677777765432 22 46789998 8999999999999999998887642 24556676
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
. ++...+ .|+.|.+.+.+++++.
T Consensus 204 ~-~la~~a------~G~lr~al~~Ldqlia 226 (576)
T PRK14965 204 A-LVARKG------DGSMRDSLSTLDQVLA 226 (576)
T ss_pred H-HHHHHc------CCCHHHHHHHHHHHHH
Confidence 6 444555 4566667777777644
No 182
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.67 E-value=1e-16 Score=168.04 Aligned_cols=155 Identities=28% Similarity=0.339 Sum_probs=135.1
Q ss_pred CCccCccCCC-CCchHhHHHHHcC-CHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCC-------
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSG-DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPG------- 72 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g-~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~------- 72 (445)
.+|++++... .|.||+|+|+..| ..+... ++.+.+.++|.... .|.||||.|+..||.+++..+++...
T Consensus 428 ~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~-~l~~~g~~~n~~s~-~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~ 505 (1143)
T KOG4177|consen 428 KRGASPNAKAKLGYTPLHVAAKKGRYLQIAR-LLLQYGADPNAVSK-QGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAK 505 (1143)
T ss_pred ccCCChhhHhhcCCChhhhhhhcccHhhhhh-hHhhcCCCcchhcc-ccCcchhhhhccCCchHHHHhhhcCCccCccch
Confidence 3578888877 5999999999999 555554 55678999999987 89999999999999999999988541
Q ss_pred ----------------------CCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCC
Q 013316 73 ----------------------NDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPG 130 (445)
Q Consensus 73 ----------------------~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~ 130 (445)
..|++++.++..|.||||+|+.+|+.++|++|+++||+++++++.|+||| |.|+..+
T Consensus 506 ~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPL-H~Aa~~G 584 (1143)
T KOG4177|consen 506 KGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPL-HQAAQQG 584 (1143)
T ss_pred hccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChh-hHHHHcC
Confidence 13678888889999999999999999999999999999999999999999 7788888
Q ss_pred ChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316 131 SAKLRELLLWHSEEQRKRRALEACSETKA 159 (445)
Q Consensus 131 ~~~i~~~ll~~~~~~~~~~~~~~~~~~~a 159 (445)
+.+++++|+++|++++..+..+.++...+
T Consensus 585 ~~~i~~LLlk~GA~vna~d~~g~TpL~iA 613 (1143)
T KOG4177|consen 585 HNDIAELLLKHGASVNAADLDGFTPLHIA 613 (1143)
T ss_pred hHHHHHHHHHcCCCCCcccccCcchhHHH
Confidence 99999999999999999887777776554
No 183
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=3.7e-15 Score=148.85 Aligned_cols=186 Identities=18% Similarity=0.235 Sum_probs=128.1
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 237 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~-------- 237 (445)
..|++++|++.+++.+.+.+.. ...+..+||+||||||||++|+.+|+.+.+.....
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~---------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILN---------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 3578899999999888875431 23455699999999999999999999986532111
Q ss_pred ---------CCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316 238 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 301 (445)
Q Consensus 238 ---------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll 301 (445)
...++++++++. -.-..++.+++.+ .+.|++|||+|.+.. .+++.|+
T Consensus 78 sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-----------~A~NaLL 140 (605)
T PRK05896 78 VCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-----------SAWNALL 140 (605)
T ss_pred HHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----------HHHHHHH
Confidence 112333333211 0123345554332 357999999999875 5778999
Q ss_pred hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
..|++ ...++|++++.. ..+ .+++++|| ..+.|++++.+++...+...+.+.. ..++++++
T Consensus 141 KtLEEPp~~tvfIL~Tt~~--~KL---l~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~keg-----------i~Is~eal 203 (605)
T PRK05896 141 KTLEEPPKHVVFIFATTEF--QKI---PLTIISRC-QRYNFKKLNNSELQELLKSIAKKEK-----------IKIEDNAI 203 (605)
T ss_pred HHHHhCCCcEEEEEECCCh--Hhh---hHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99986 456777766542 222 57899998 7899999999999999998887641 24556676
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNA 407 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~ 407 (445)
..+ ...+ .|+.|.+.+.++.+
T Consensus 204 ~~L-a~lS------~GdlR~AlnlLekL 224 (605)
T PRK05896 204 DKI-ADLA------DGSLRDGLSILDQL 224 (605)
T ss_pred HHH-HHHc------CCcHHHHHHHHHHH
Confidence 644 4554 45667777777775
No 184
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.5e-15 Score=142.86 Aligned_cols=204 Identities=17% Similarity=0.224 Sum_probs=132.5
Q ss_pred CCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccc---------------cCCchhHHHHH---
Q 013316 203 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF---------------VGHTGPKTRRR--- 264 (445)
Q Consensus 203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~---------------~g~~~~~~~~~--- 264 (445)
...|.++++|||||||||.+++.+.+++..... ...++.++|-...+.+ .|-+....-+.
T Consensus 39 ~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~--~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~ 116 (366)
T COG1474 39 GERPSNIIIYGPTGTGKTATVKFVMEELEESSA--NVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYD 116 (366)
T ss_pred CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc--cCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHH
Confidence 456778999999999999999999999976321 1127888887643221 12222222222
Q ss_pred -HHH-ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccc-ccee
Q 013316 265 -IKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFH 339 (445)
Q Consensus 265 -~~~-a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~-~~i~ 339 (445)
+.. ...-||+|||+|.|..+.+ +.+-.|+...+. .++.+|+.++..... ...+|.+.++|. ..|.
T Consensus 117 ~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~~~~v~vi~i~n~~~~~--~~ld~rv~s~l~~~~I~ 186 (366)
T COG1474 117 NLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGENKVKVSIIAVSNDDKFL--DYLDPRVKSSLGPSEIV 186 (366)
T ss_pred HHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhccccceeEEEEEEeccHHHH--HHhhhhhhhccCcceee
Confidence 222 1337999999999998543 555666665554 345666665555432 234899999884 7799
Q ss_pred CCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCC
Q 013316 340 FNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDC 419 (445)
Q Consensus 340 ~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~ 419 (445)
||+|+.+|+.+|+....+.. +.+.+-.+.+..+++... ....|.+|....++.+|.+.+
T Consensus 187 F~pY~a~el~~Il~~R~~~~----------~~~~~~~~~vl~lia~~~---a~~~GDAR~aidilr~A~eiA-------- 245 (366)
T COG1474 187 FPPYTAEELYDILRERVEEG----------FSAGVIDDDVLKLIAALV---AAESGDARKAIDILRRAGEIA-------- 245 (366)
T ss_pred eCCCCHHHHHHHHHHHHHhh----------ccCCCcCccHHHHHHHHH---HHcCccHHHHHHHHHHHHHHH--------
Confidence 99999999999999988753 122222223333554443 223457777778888774433
Q ss_pred CChhhhhhccHHHHHHHHHHH
Q 013316 420 LDTDELRTITLEDLEAGLKLL 440 (445)
Q Consensus 420 ~~~~~~~~i~~~d~~~a~~~~ 440 (445)
+.+...+++.+++..|.+++
T Consensus 246 -e~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 246 -EREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred -HhhCCCCcCHHHHHHHHHHh
Confidence 33445588999999886554
No 185
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.66 E-value=2.9e-15 Score=146.23 Aligned_cols=227 Identities=20% Similarity=0.182 Sum_probs=139.3
Q ss_pred hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC--CCCCCeEEeecc
Q 013316 170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI--LPTDRVTEVQRT 247 (445)
Q Consensus 170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~--~~~~~~~~~~~~ 247 (445)
+++|.++..+.|..++.... ....+.+++++||||||||++++.+.+.+..... -....++.++|.
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~------------~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPIL------------RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHH------------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 48888888888877665431 1245678999999999999999999988753210 001257777776
Q ss_pred cccc----------ccc--CC-------chhH-HHHHHHH----ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhh
Q 013316 248 DLVG----------EFV--GH-------TGPK-TRRRIKE----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV 303 (445)
Q Consensus 248 ~l~~----------~~~--g~-------~~~~-~~~~~~~----a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~ 303 (445)
...+ .+. |. +... ...+++. .+..||+|||+|.+....+ +++..|+..
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~--------~~L~~l~~~ 155 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDD--------DLLYQLSRA 155 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCc--------HHHHhHhcc
Confidence 5321 121 21 1111 2223322 2347999999999984222 355566655
Q ss_pred c-----cCCcEEEEEecCchhHHHHHhhCcccccccc-cceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHH
Q 013316 304 M-----DGGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD 377 (445)
Q Consensus 304 ~-----~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 377 (445)
. ...++.+|+.++..... ...++.+.+||. ..+.|++|+.+|+.+|++..++... . ...++++
T Consensus 156 ~~~~~~~~~~v~lI~i~n~~~~~--~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~--------~-~~~~~~~ 224 (365)
T TIGR02928 156 RSNGDLDNAKVGVIGISNDLKFR--ENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAF--------Y-DGVLDDG 224 (365)
T ss_pred ccccCCCCCeEEEEEEECCcchH--hhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhc--------c-CCCCChh
Confidence 2 22567777766554332 234788888985 6799999999999999999886311 0 1234555
Q ss_pred HHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316 378 AIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440 (445)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 440 (445)
++. ++.... .+..|+.|.+.++++.|...... ++...|+.+|+.+|+..+
T Consensus 225 ~l~-~i~~~~---~~~~Gd~R~al~~l~~a~~~a~~---------~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 225 VIP-LCAALA---AQEHGDARKAIDLLRVAGEIAER---------EGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHH-HHHHHH---HHhcCCHHHHHHHHHHHHHHHHH---------cCCCCCCHHHHHHHHHHH
Confidence 544 322222 12246677777777777433221 123469999999888765
No 186
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=4.3e-15 Score=150.63 Aligned_cols=187 Identities=20% Similarity=0.211 Sum_probs=130.5
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC-C-----
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-D----- 239 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~-~----- 239 (445)
..|++++|++.+++.|...+.. .+.+..+||+||+|||||++|+++|+.+.+...... +
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~---------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFET---------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 3678899999999998886542 234567999999999999999999999876432111 1
Q ss_pred ----------------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHH
Q 013316 240 ----------------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEA 296 (445)
Q Consensus 240 ----------------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~ 296 (445)
.+++++.++- . .-..++.+++.+ .+.|++|||+|.+.. ..
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~----~--gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a 148 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASH----T--GVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AA 148 (598)
T ss_pred CcccHHHHHHhcCCCCceEEeccccc----C--CHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HH
Confidence 1222222110 0 123456665544 458999999999975 67
Q ss_pred HHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcc
Q 013316 297 LEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC 374 (445)
Q Consensus 297 ~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~ 374 (445)
++.|++.|++ ..+++|++++.... + -+.+++|| ..+.|+.++.+++...+...+++.. ..+
T Consensus 149 ~naLLKtLEePp~~~~fIl~tte~~k--l---l~tI~SRc-q~~~f~~l~~~el~~~L~~i~~keg-----------i~i 211 (598)
T PRK09111 149 FNALLKTLEEPPPHVKFIFATTEIRK--V---PVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEG-----------VEV 211 (598)
T ss_pred HHHHHHHHHhCCCCeEEEEEeCChhh--h---hHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCC
Confidence 8899999986 55667766654322 2 35689998 8899999999999999999887642 245
Q ss_pred cHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316 375 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNAR 408 (445)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~ 408 (445)
+.+++..++ ..+ .|+.|.+.+.+++++
T Consensus 212 ~~eAl~lIa-~~a------~Gdlr~al~~Ldkli 238 (598)
T PRK09111 212 EDEALALIA-RAA------EGSVRDGLSLLDQAI 238 (598)
T ss_pred CHHHHHHHH-HHc------CCCHHHHHHHHHHHH
Confidence 666766444 555 456677777777764
No 187
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=6.7e-15 Score=146.23 Aligned_cols=188 Identities=19% Similarity=0.221 Sum_probs=129.9
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 237 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~-------- 237 (445)
..|++++|++.+++.|...+.. ...+...||+||+|||||++|+++++.+.+.....
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~---------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDN---------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHc---------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 4688899999999988886542 12344468999999999999999999986422110
Q ss_pred ---------CCCeEEeecccccccccCCchhHHHHHHHH-------ccCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316 238 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 301 (445)
Q Consensus 238 ---------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~-------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll 301 (445)
...+++++.++- ..-..++.+++. +...|++|||+|.+.. ++++.|+
T Consensus 76 ~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-----------~A~NALL 138 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-----------EAFNALL 138 (535)
T ss_pred HHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHHH
Confidence 111233322110 012455666544 2347999999999876 7889999
Q ss_pred hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
+.|++ ..+++|++++.. ..+ .|++++|+ ..++|.+++.+++...+...+.+.. ..++++++
T Consensus 139 K~LEEpp~~t~FIL~ttd~--~kL---~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EG-----------i~i~~~Al 201 (535)
T PRK08451 139 KTLEEPPSYVKFILATTDP--LKL---PATILSRT-QHFRFKQIPQNSIISHLKTILEKEG-----------VSYEPEAL 201 (535)
T ss_pred HHHhhcCCceEEEEEECCh--hhC---chHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99986 456677766542 222 57899997 8999999999999999998887642 24566676
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
. .+...+ .|+.|.+.+++++++.
T Consensus 202 ~-~Ia~~s------~GdlR~alnlLdqai~ 224 (535)
T PRK08451 202 E-ILARSG------NGSLRDTLTLLDQAII 224 (535)
T ss_pred H-HHHHHc------CCcHHHHHHHHHHHHH
Confidence 6 444555 4566667777777644
No 188
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.66 E-value=5.5e-15 Score=145.77 Aligned_cols=227 Identities=16% Similarity=0.147 Sum_probs=141.1
Q ss_pred hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316 170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 249 (445)
Q Consensus 170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l 249 (445)
.++|.++..++|...+.... ....+.+++++||||||||++++.+.+.+.... ....++.++|...
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~------------~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~--~~~~~v~in~~~~ 96 (394)
T PRK00411 31 NLPHREEQIEELAFALRPAL------------RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA--VKVVYVYINCQID 96 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHh------------CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEECCcC
Confidence 36777776666666543321 124566899999999999999999999886532 1236777887643
Q ss_pred c----------ccccCC-------chhHHHHH----HHHc-cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-
Q 013316 250 V----------GEFVGH-------TGPKTRRR----IKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG- 306 (445)
Q Consensus 250 ~----------~~~~g~-------~~~~~~~~----~~~a-~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~- 306 (445)
. .++.+. +...+... +... .+.||+|||+|.+....+ .+.+..|+..++.
T Consensus 97 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~~ 169 (394)
T PRK00411 97 RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVLYSLLRAHEEY 169 (394)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHHHHHHHhhhcc
Confidence 2 122221 11222222 2211 237999999999982211 1455566655542
Q ss_pred --CcEEEEEecCchhHHHHHhhCcccccccc-cceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHH
Q 013316 307 --GKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALI 383 (445)
Q Consensus 307 --~~~~~i~a~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 383 (445)
.++.+|+.++....... .+|.+++||. ..|.|++|+.+++.+|++..+... +. ...++++++. .+
T Consensus 170 ~~~~v~vI~i~~~~~~~~~--l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~--------~~-~~~~~~~~l~-~i 237 (394)
T PRK00411 170 PGARIGVIGISSDLTFLYI--LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEG--------FY-PGVVDDEVLD-LI 237 (394)
T ss_pred CCCeEEEEEEECCcchhhh--cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhh--------cc-cCCCCHhHHH-HH
Confidence 36777777665443322 3788888874 678999999999999999887542 01 1234555654 44
Q ss_pred HHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316 384 EKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 441 (445)
Q Consensus 384 ~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 441 (445)
...+.+ ..|+.|.+..++..|...+.. .+..+|+.+|+.+|+..+.
T Consensus 238 ~~~~~~---~~Gd~r~a~~ll~~a~~~a~~---------~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 238 ADLTAR---EHGDARVAIDLLRRAGLIAER---------EGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred HHHHHH---hcCcHHHHHHHHHHHHHHHHH---------cCCCCcCHHHHHHHHHHHH
Confidence 444422 356677777778776443222 1234799999999988753
No 189
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.65 E-value=8.7e-15 Score=142.33 Aligned_cols=187 Identities=18% Similarity=0.244 Sum_probs=126.9
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 237 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~-------- 237 (445)
..|++++|++.+++.+.+++.. ...+..+||+||||+|||++|+.+++.+.......
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~---------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKN---------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 3678899999999988876542 22345689999999999999999999986532110
Q ss_pred ---------CCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316 238 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 301 (445)
Q Consensus 238 ---------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll 301 (445)
...++.++.+.. .....++++++.+ .+.|++|||+|.+.. ..++.|+
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~Ll 138 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAASN------NGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNALL 138 (355)
T ss_pred HHHHHhcCCCCCEEEeecccc------CCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHHHH
Confidence 112333333210 1223455565544 336999999998865 5678888
Q ss_pred hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
+.+++ ..+++|+++++.. .+ .+++++|+ ..+.|++|+.+++.+++..++++.. ..++++++
T Consensus 139 ~~le~~~~~~~lIl~~~~~~--~l---~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g-----------~~i~~~a~ 201 (355)
T TIGR02397 139 KTLEEPPEHVVFILATTEPH--KI---PATILSRC-QRFDFKRIPLEDIVERLKKILDKEG-----------IKIEDEAL 201 (355)
T ss_pred HHHhCCccceeEEEEeCCHH--HH---HHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 88875 4566666654322 22 46788998 7899999999999999999887642 24556676
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNAR 408 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~ 408 (445)
..+. ..+ .++.+.+.+.++++.
T Consensus 202 ~~l~-~~~------~g~~~~a~~~lekl~ 223 (355)
T TIGR02397 202 ELIA-RAA------DGSLRDALSLLDQLI 223 (355)
T ss_pred HHHH-HHc------CCChHHHHHHHHHHH
Confidence 6444 444 456677777777763
No 190
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=7e-15 Score=148.46 Aligned_cols=187 Identities=17% Similarity=0.197 Sum_probs=129.4
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC-------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 238 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~------- 238 (445)
..|++++|++.+++.|..++.. ...+..+||+||||+|||++|+++|+.+.+......
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~---------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIES---------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 4688899999999998886542 223456999999999999999999999875321110
Q ss_pred ----------CCeEEeecccccccccCCchhHHHHHHHH-------ccCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316 239 ----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 301 (445)
Q Consensus 239 ----------~~~~~~~~~~l~~~~~g~~~~~~~~~~~~-------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll 301 (445)
..++.++.+. ...-..++.+.+. +++.|++|||+|.+.. .+++.|+
T Consensus 78 ~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-----------~a~naLL 140 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-----------SAFNALL 140 (563)
T ss_pred HHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-----------HHHHHHH
Confidence 1122222111 0012344444432 3457999999998875 6788999
Q ss_pred hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
+.+++ ..+++|++++.. ..+ .+++++|+ ..+.|.+++.+++...+...+.+.. ..++++++
T Consensus 141 K~LEepp~~~vfI~~tte~--~kL---~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~eg-----------i~id~eAl 203 (563)
T PRK06647 141 KTIEEPPPYIVFIFATTEV--HKL---PATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQ-----------IKYEDEAL 203 (563)
T ss_pred HhhccCCCCEEEEEecCCh--HHh---HHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 567777776543 222 57899998 7899999999999999988776531 24566777
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNAR 408 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~ 408 (445)
..+. ..+ .|+.|.+.+.+++++
T Consensus 204 ~lLa-~~s------~GdlR~alslLdkli 225 (563)
T PRK06647 204 KWIA-YKS------TGSVRDAYTLFDQVV 225 (563)
T ss_pred HHHH-HHc------CCCHHHHHHHHHHHH
Confidence 7544 455 466777777887763
No 191
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=5.1e-15 Score=144.97 Aligned_cols=187 Identities=16% Similarity=0.215 Sum_probs=125.5
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 237 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~-------- 237 (445)
..|++++|++.+++.|+.++.. ...+..+||+||||||||++|+++|+.+.+.....
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~---------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRM---------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHh---------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 3578899999999988876542 23455699999999999999999999997632110
Q ss_pred -C----------------CCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhH
Q 013316 238 -T----------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYG 293 (445)
Q Consensus 238 -~----------------~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~ 293 (445)
. ..++.++.+.. ..-..++.+.+.. ...|+||||+|.+..
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~---------- 141 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI---------- 141 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH----------
Confidence 0 01222221110 0123444444333 457999999999875
Q ss_pred HHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccC
Q 013316 294 IEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLH 371 (445)
Q Consensus 294 ~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~ 371 (445)
..++.|++.+++ ...++|++++.. ..+ .+++++|+ ..++|++++.+++...+...+++. .
T Consensus 142 -~~~~~LLk~LEep~~~t~~Il~t~~~--~kl---~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~-----------g 203 (397)
T PRK14955 142 -AAFNAFLKTLEEPPPHAIFIFATTEL--HKI---PATIASRC-QRFNFKRIPLEEIQQQLQGICEAE-----------G 203 (397)
T ss_pred -HHHHHHHHHHhcCCCCeEEEEEeCCh--HHh---HHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHc-----------C
Confidence 567788888886 355666655432 222 46788898 789999999999999998888753 1
Q ss_pred CcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316 372 SSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAR 408 (445)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~ 408 (445)
..++++++..+. ..+ .|+.|.+.+.++++.
T Consensus 204 ~~i~~~al~~l~-~~s------~g~lr~a~~~L~kl~ 233 (397)
T PRK14955 204 ISVDADALQLIG-RKA------QGSMRDAQSILDQVI 233 (397)
T ss_pred CCCCHHHHHHHH-HHc------CCCHHHHHHHHHHHH
Confidence 246667776444 555 466667777777663
No 192
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.65 E-value=5.4e-15 Score=136.65 Aligned_cols=133 Identities=26% Similarity=0.280 Sum_probs=94.6
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc------ccccccCCchhHHHH---------------
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD------LVGEFVGHTGPKTRR--------------- 263 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~------l~~~~~g~~~~~~~~--------------- 263 (445)
...+++|+||||||||++|+++|+.++. +++.++|.. +.+.+.|........
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~-------~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDR-------PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQ 92 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCC-------CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccce
Confidence 3468999999999999999999987765 788776653 444444332211110
Q ss_pred ------HHH-HccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC------------------cEEEEEecCch
Q 013316 264 ------RIK-EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------------------KVVVIFAGYSE 318 (445)
Q Consensus 264 ------~~~-~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------------------~~~~i~a~~~~ 318 (445)
++. ...+++|+||||+++.+ ++++.|+..|+++ .+.+|+++++.
T Consensus 93 ~~~~g~l~~A~~~g~~lllDEi~r~~~-----------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 93 NWVDNRLTLAVREGFTLVYDEFTRSKP-----------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred eecCchHHHHHHcCCEEEEcchhhCCH-----------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 111 23578999999988876 7788888888652 34567776665
Q ss_pred hHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHH
Q 013316 319 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM 356 (445)
Q Consensus 319 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l 356 (445)
...-....+++|++|| ..+.++.|+.++..+|+....
T Consensus 162 ~~~g~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 162 EYAGVHETQDALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cccceecccHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 4332223468899999 789999999999999988754
No 193
>PHA02917 ankyrin-like protein; Provisional
Probab=99.64 E-value=1.1e-15 Score=157.95 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=90.7
Q ss_pred CCHHHHHHHHhhCCCCcCCCCCCCCChHHHHH--HhCCcHHHHHHhhcCCCCCCcccccccC---CC-----------Cc
Q 013316 24 GDLLAFQRLLRENPSLLNERNPVMAQTPLHVS--AGYNKAEIVKSLLEWPGNDKVELEAQNM---YG-----------ET 87 (445)
Q Consensus 24 g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A--~~~g~~~iv~~Ll~~~~~~g~~v~~~d~---~g-----------~t 87 (445)
|+.++++.|+ ..|+++|..+. .|+||||+| +..|+.+++++|+++ |+++|.+|. .| .|
T Consensus 114 ~~~e~vk~Ll-~~Gadin~~d~-~g~T~L~~~~a~~~~~~eivklLi~~----Ga~vn~~d~~~~~g~~~~~~~~~~~~t 187 (661)
T PHA02917 114 VDVDLIKVLV-EHGFDLSVKCE-NHRSVIENYVMTDDPVPEIIDLFIEN----GCSVLYEDEDDEYGYAYDDYQPRNCGT 187 (661)
T ss_pred CCHHHHHHHH-HcCCCCCccCC-CCccHHHHHHHccCCCHHHHHHHHHc----CCCcccccccccccccccccccccccc
Confidence 3445555554 46899999987 799999954 457899999999995 888876543 34 59
Q ss_pred HHHHHHH-----------cCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCCh--HHHHHHHhhhhhH
Q 013316 88 PLHMAAK-----------NGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSA--KLRELLLWHSEEQ 145 (445)
Q Consensus 88 pLh~A~~-----------~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~--~i~~~ll~~~~~~ 145 (445)
|||+|+. .++.+++++|+++|++++.+|.+|.||| |+|...++. +++++|+. |++.
T Consensus 188 ~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpL-h~A~~~g~~~~eivk~Li~-g~d~ 256 (661)
T PHA02917 188 VLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTAL-QYYIKSSHIDIDIVKLLMK-GIDN 256 (661)
T ss_pred HHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHH-HHHHHcCCCcHHHHHHHHh-CCcc
Confidence 9999986 4689999999999999999999999999 666666653 79999975 6543
No 194
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.64 E-value=8.9e-16 Score=111.61 Aligned_cols=101 Identities=27% Similarity=0.398 Sum_probs=92.4
Q ss_pred hHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHH
Q 013316 15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK 94 (445)
Q Consensus 15 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~ 94 (445)
-.+.|++++|.++.|+..+.. +.++|..- .|++|||||+-+|..+++++|+.. |++++.+|++|-|||..|+.
T Consensus 4 ~~~~W~vkNG~~DeVk~~v~~-g~nVn~~~--ggR~plhyAAD~GQl~ilefli~i----GA~i~~kDKygITPLLsAvw 76 (117)
T KOG4214|consen 4 MSVAWNVKNGEIDEVKQSVNE-GLNVNEIY--GGRTPLHYAADYGQLSILEFLISI----GANIQDKDKYGITPLLSAVW 76 (117)
T ss_pred hhHhhhhccCcHHHHHHHHHc-cccHHHHh--CCcccchHhhhcchHHHHHHHHHh----ccccCCccccCCcHHHHHHH
Confidence 457899999999999998865 57777665 599999999999999999999995 99999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCcccccCCCChh
Q 013316 95 NGCNEAAKLLLAHGAFIEAKANEGKTPL 122 (445)
Q Consensus 95 ~g~~~~~~~Ll~~ga~~~~~~~~g~tpl 122 (445)
.||.+||++|+++||+-..+..+|.+.+
T Consensus 77 EGH~~cVklLL~~GAdrt~~~PdG~~~~ 104 (117)
T KOG4214|consen 77 EGHRDCVKLLLQNGADRTIHAPDGTALI 104 (117)
T ss_pred HhhHHHHHHHHHcCcccceeCCCchhHH
Confidence 9999999999999999999999998877
No 195
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.64 E-value=1e-15 Score=163.73 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=124.6
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 013316 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (445)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpL 89 (445)
...+.++||.||..|+.+.++.++. .|.++|..|. .|+||||+||..|+.+++++|+++ |+++|.+|.+|+|||
T Consensus 522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~-~G~d~n~~d~-~G~TpLh~Aa~~g~~~~v~~Ll~~----gadin~~d~~G~TpL 595 (823)
T PLN03192 522 DPNMASNLLTVASTGNAALLEELLK-AKLDPDIGDS-KGRTPLHIAASKGYEDCVLVLLKH----ACNVHIRDANGNTAL 595 (823)
T ss_pred CccchhHHHHHHHcCCHHHHHHHHH-CCCCCCCCCC-CCCCHHHHHHHcChHHHHHHHHhc----CCCCCCcCCCCCCHH
Confidence 3456899999999999999998885 6899999997 799999999999999999999995 889999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316 90 HMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA 159 (445)
Q Consensus 90 h~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a 159 (445)
|+|+..|+.+++++|++.++..+ ...+.+|| +.|+..++.+++++|+++|++++.++..+.++...+
T Consensus 596 ~~A~~~g~~~iv~~L~~~~~~~~--~~~~~~~L-~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A 662 (823)
T PLN03192 596 WNAISAKHHKIFRILYHFASISD--PHAAGDLL-CTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVA 662 (823)
T ss_pred HHHHHhCCHHHHHHHHhcCcccC--cccCchHH-HHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 99999999999999999887654 34577999 889999999999999999999888777666665544
No 196
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.64 E-value=6.3e-16 Score=125.87 Aligned_cols=117 Identities=26% Similarity=0.300 Sum_probs=100.8
Q ss_pred CccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCC
Q 013316 6 DRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY 84 (445)
Q Consensus 6 ~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~ 84 (445)
.+|.++ .|.||||-|+.+|+++++..|+. .+++++.++. .||||||.||..++.+++.+||.+ |+|||+....
T Consensus 89 ~vNtrD~D~YTpLHRAaYn~h~div~~ll~-~gAn~~a~T~-~GWTPLhSAckWnN~~va~~LLqh----gaDVnA~t~g 162 (228)
T KOG0512|consen 89 HVNTRDEDEYTPLHRAAYNGHLDIVHELLL-SGANKEAKTN-EGWTPLHSACKWNNFEVAGRLLQH----GADVNAQTKG 162 (228)
T ss_pred cccccccccccHHHHHHhcCchHHHHHHHH-ccCCcccccc-cCccchhhhhcccchhHHHHHHhc----cCcccccccc
Confidence 456666 69999999999999999998885 5899999997 799999999999999999999996 9999999999
Q ss_pred CCcHHHHHHHcCCHH-HHHHHH-hcCCCCcccccCCCChhhhhhcCC
Q 013316 85 GETPLHMAAKNGCNE-AAKLLL-AHGAFIEAKANEGKTPLDHLSNGP 129 (445)
Q Consensus 85 g~tpLh~A~~~g~~~-~~~~Ll-~~ga~~~~~~~~g~tpl~~~a~~~ 129 (445)
-.||||+||...+.. .+.+|+ ..+.++..++..+.||+ .+|.+.
T Consensus 163 ~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~-~iARRT 208 (228)
T KOG0512|consen 163 LLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAF-DIARRT 208 (228)
T ss_pred cchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHH-HHHHHh
Confidence 999999999887664 455555 56888888999999999 566553
No 197
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=8.7e-15 Score=149.10 Aligned_cols=186 Identities=20% Similarity=0.277 Sum_probs=126.5
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCC-CCC-----
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL-PTD----- 239 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~-~~~----- 239 (445)
..|++++|++.+++.|+..+.. ...+..+||+||+|||||++|+++|+.+.+...- ...
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~---------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKS---------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 3688899999999988886542 1234557999999999999999999998763210 000
Q ss_pred --------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhc
Q 013316 240 --------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM 304 (445)
Q Consensus 240 --------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~ 304 (445)
.+++++.+. ..+...++.+++.+ .+.|++|||+|.+.. .+++.|+..|
T Consensus 80 ~~~~~~~~Dvieidaas------n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A~NALLKtL 142 (725)
T PRK07133 80 IENVNNSLDIIEMDAAS------NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SAFNALLKTL 142 (725)
T ss_pred HHhhcCCCcEEEEeccc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HHHHHHHHHh
Confidence 111111100 01123355555443 347999999999876 6789999999
Q ss_pred cC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHH
Q 013316 305 DG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL 382 (445)
Q Consensus 305 ~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 382 (445)
++ ..+++|++|+... .+ .+.+++|| ..+.|.+++.+++...+...+.+.. ..++.+++. .
T Consensus 143 EEPP~~tifILaTte~~--KL---l~TI~SRc-q~ieF~~L~~eeI~~~L~~il~keg-----------I~id~eAl~-~ 204 (725)
T PRK07133 143 EEPPKHVIFILATTEVH--KI---PLTILSRV-QRFNFRRISEDEIVSRLEFILEKEN-----------ISYEKNALK-L 204 (725)
T ss_pred hcCCCceEEEEEcCChh--hh---hHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHH-H
Confidence 87 4567777765432 22 57789999 7999999999999999998877642 234555655 4
Q ss_pred HHHHHHHhhhcccCchhhHHHHHHH
Q 013316 383 IEKETTEKQRREMNGGLVDPMLVNA 407 (445)
Q Consensus 383 ~~~~~~~~~~~~~n~r~l~~~~~~~ 407 (445)
+...+ .|+.|.+.++++++
T Consensus 205 LA~lS------~GslR~AlslLekl 223 (725)
T PRK07133 205 IAKLS------SGSLRDALSIAEQV 223 (725)
T ss_pred HHHHc------CCCHHHHHHHHHHH
Confidence 55555 35556666666655
No 198
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.64 E-value=2.3e-14 Score=130.23 Aligned_cols=189 Identities=12% Similarity=0.151 Sum_probs=120.0
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccC
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM 284 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~ 284 (445)
...+++|+||||||||++++++++.+...+. .+..++...... ....+.+.++. ..+|+|||++.+..+
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~----~v~y~~~~~~~~-----~~~~~~~~~~~--~dlliiDdi~~~~~~ 112 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGR----AVGYVPLDKRAW-----FVPEVLEGMEQ--LSLVCIDNIECIAGD 112 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCC----eEEEEEHHHHhh-----hhHHHHHHhhh--CCEEEEeChhhhcCC
Confidence 3458999999999999999999998875322 344444433211 11122233332 258999999998753
Q ss_pred CCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhccccc
Q 013316 285 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQTED 362 (445)
Q Consensus 285 ~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~~~ 362 (445)
.+ .....+..+...++.++..+|++++..+.. .-...|.|++|+. .++.+++|+.+++.++++......
T Consensus 113 ~~-----~~~~lf~l~n~~~e~g~~~li~ts~~~p~~-l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~--- 183 (235)
T PRK08084 113 EL-----WEMAIFDLYNRILESGRTRLLITGDRPPRQ-LNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLR--- 183 (235)
T ss_pred HH-----HHHHHHHHHHHHHHcCCCeEEEeCCCChHH-cCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHc---
Confidence 21 111333444455566665566666644433 2223699999995 788999999999999998766542
Q ss_pred ccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316 363 SLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 438 (445)
Q Consensus 363 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~ 438 (445)
. -.++++++.++..+. .++.|.+.+++++..+. ... ....||.+.++++++
T Consensus 184 ------~--~~l~~~v~~~L~~~~-------~~d~r~l~~~l~~l~~~-~l~---------~~~~it~~~~k~~l~ 234 (235)
T PRK08084 184 ------G--FELPEDVGRFLLKRL-------DREMRTLFMTLDQLDRA-SIT---------AQRKLTIPFVKEILK 234 (235)
T ss_pred ------C--CCCCHHHHHHHHHhh-------cCCHHHHHHHHHHHHHH-HHh---------cCCCCCHHHHHHHHc
Confidence 1 245667777666444 67888899999886211 110 012478777777653
No 199
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.9e-14 Score=143.14 Aligned_cols=187 Identities=19% Similarity=0.240 Sum_probs=125.6
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC-----
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR----- 240 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~----- 240 (445)
..|++++|++.+...+...+.. ...+..+||+||+|||||++|+.+|+.+.+.......+
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~---------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKL---------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 3678899999999988886542 12334478999999999999999999987532111111
Q ss_pred ------------eEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316 241 ------------VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 301 (445)
Q Consensus 241 ------------~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll 301 (445)
+++++.+.- ..-..++.+.+.+ ...|++|||+|.+.. .+++.|+
T Consensus 78 nc~~i~~g~~~d~~eidaas~------~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a~naLL 140 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASN------RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EAFNALL 140 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccC------CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HHHHHHH
Confidence 222221110 0122234443332 347999999998875 6678888
Q ss_pred hhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 302 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 302 ~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
..+++ ...++|++++... .+ .+++++|+ ..+.|++|+.+++...+...+++.. ..++++++
T Consensus 141 k~LEepp~~~v~Il~tt~~~--kl---~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~eg-----------i~id~~al 203 (486)
T PRK14953 141 KTLEEPPPRTIFILCTTEYD--KI---PPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEK-----------IEYEEKAL 203 (486)
T ss_pred HHHhcCCCCeEEEEEECCHH--HH---HHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 88886 3566666655322 22 46788898 6899999999999999999888642 24556676
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNAR 408 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~ 408 (445)
.. +...+ .||.|.+.+.++.+.
T Consensus 204 ~~-La~~s------~G~lr~al~~Ldkl~ 225 (486)
T PRK14953 204 DL-LAQAS------EGGMRDAASLLDQAS 225 (486)
T ss_pred HH-HHHHc------CCCHHHHHHHHHHHH
Confidence 64 44455 567777888888773
No 200
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.63 E-value=5.3e-15 Score=145.08 Aligned_cols=196 Identities=20% Similarity=0.244 Sum_probs=142.5
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
...|++++|++.+...|...+..- +-....||+||.|||||++||.+|+.+++.......|+..+
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~---------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENG---------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhC---------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 457889999999999999865432 34557899999999999999999999988653222233222
Q ss_pred -eccccccc-cc---------CCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC
Q 013316 245 -QRTDLVGE-FV---------GHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG 306 (445)
Q Consensus 245 -~~~~l~~~-~~---------g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~ 306 (445)
.|-.+... ++ ..+-..++.+.++. ++.|.+|||+|.|.. .+.+.||+-+++
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~-----------~afNALLKTLEE 145 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK-----------QAFNALLKTLEE 145 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH-----------HHHHHHhccccc
Confidence 11111111 11 11335667777665 458999999999987 889999999997
Q ss_pred --CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHH
Q 013316 307 --GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 384 (445)
Q Consensus 307 --~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 384 (445)
..+++|+|||..... -+.+++|| +.+.|...+.+++...+..++.+.. ..++++++. +++
T Consensus 146 PP~hV~FIlATTe~~Ki-----p~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~-----------I~~e~~aL~-~ia 207 (515)
T COG2812 146 PPSHVKFILATTEPQKI-----PNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEG-----------INIEEDALS-LIA 207 (515)
T ss_pred CccCeEEEEecCCcCcC-----chhhhhcc-ccccccCCCHHHHHHHHHHHHHhcC-----------CccCHHHHH-HHH
Confidence 568889988765443 57789999 9999999999999999999998752 345667777 555
Q ss_pred HHHHHhhhcccCchhhHHHHHHHHHh
Q 013316 385 KETTEKQRREMNGGLVDPMLVNAREN 410 (445)
Q Consensus 385 ~~~~~~~~~~~n~r~l~~~~~~~~~~ 410 (445)
+.. .|..|+.-.++++++..
T Consensus 208 ~~a------~Gs~RDalslLDq~i~~ 227 (515)
T COG2812 208 RAA------EGSLRDALSLLDQAIAF 227 (515)
T ss_pred HHc------CCChhhHHHHHHHHHHc
Confidence 555 34457777788877443
No 201
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.7e-14 Score=140.56 Aligned_cols=187 Identities=17% Similarity=0.216 Sum_probs=126.3
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC-----CCC
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-----TDR 240 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~-----~~~ 240 (445)
..|++++|++.+++.+.+.+.. ...+.++|||||||+|||++|+++++.+...+... ...
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~---------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIEN---------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 3678899999999888876542 23456899999999999999999999887633211 111
Q ss_pred eEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEE
Q 013316 241 VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVV 311 (445)
Q Consensus 241 ~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~ 311 (445)
+++++... ......++.+++++ ...||||||+|.+.+ ..++.|+..+++ ...++
T Consensus 79 ~~~l~~~~------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-----------~~~~~ll~~le~~~~~~~~ 141 (367)
T PRK14970 79 IFELDAAS------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-----------AAFNAFLKTLEEPPAHAIF 141 (367)
T ss_pred eEEecccc------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-----------HHHHHHHHHHhCCCCceEE
Confidence 22222211 11234555666543 347999999998865 557788887775 33455
Q ss_pred EEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhh
Q 013316 312 IFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 391 (445)
Q Consensus 312 i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 391 (445)
|++++... ...|++++|+ ..+.|++|+.+++..++...+.+.. ..++++++..++ ..+
T Consensus 142 Il~~~~~~-----kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g-----------~~i~~~al~~l~-~~~---- 199 (367)
T PRK14970 142 ILATTEKH-----KIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEG-----------IKFEDDALHIIA-QKA---- 199 (367)
T ss_pred EEEeCCcc-----cCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHH-HhC----
Confidence 55544321 1257888998 6799999999999999998887642 245667777555 444
Q ss_pred hcccCchhhHHHHHHHH
Q 013316 392 RREMNGGLVDPMLVNAR 408 (445)
Q Consensus 392 ~~~~n~r~l~~~~~~~~ 408 (445)
.++.|.+.+.+++..
T Consensus 200 --~gdlr~~~~~lekl~ 214 (367)
T PRK14970 200 --DGALRDALSIFDRVV 214 (367)
T ss_pred --CCCHHHHHHHHHHHH
Confidence 466777777777764
No 202
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1.4e-14 Score=143.23 Aligned_cols=186 Identities=18% Similarity=0.218 Sum_probs=125.1
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 237 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~-------- 237 (445)
..|++++|++.++..+..++.. ...+..+||+||||||||++|+.+|+.+.......
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~---------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF---------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 4688999999999988876542 12345689999999999999999999986531100
Q ss_pred ----------CCCeEEeecccccccccCCchhHHHHHHH-------HccCcEEEEcCccccccCCCCCCchhHHHHHHHH
Q 013316 238 ----------TDRVTEVQRTDLVGEFVGHTGPKTRRRIK-------EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEI 300 (445)
Q Consensus 238 ----------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~-------~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~l 300 (445)
...+++++++.. .| -..++.+.+ .+...|+||||+|.+.. ..++.|
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~----~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----------~~~n~L 141 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASH----RG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----------EAFNSL 141 (451)
T ss_pred HHHHHHhcCCCCceEEeecccc----CC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------HHHHHH
Confidence 012333322111 01 122332221 13568999999998875 678889
Q ss_pred HhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHH
Q 013316 301 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 378 (445)
Q Consensus 301 l~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 378 (445)
++.|++ +.+++|++++.. .. ..+++++|+ ..++|++++.+++...+...+++.. ..++.++
T Consensus 142 Lk~lEep~~~~~~Il~t~~~--~k---l~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg-----------~~i~~~a 204 (451)
T PRK06305 142 LKTLEEPPQHVKFFLATTEI--HK---IPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEG-----------IETSREA 204 (451)
T ss_pred HHHhhcCCCCceEEEEeCCh--Hh---cchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence 999987 566677766433 22 257899999 7899999999999999988877531 2456667
Q ss_pred HHHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316 379 IAALIEKETTEKQRREMNGGLVDPMLVNA 407 (445)
Q Consensus 379 l~~~~~~~~~~~~~~~~n~r~l~~~~~~~ 407 (445)
+..++ ..+ .||.|.+.+.++..
T Consensus 205 l~~L~-~~s------~gdlr~a~~~Lekl 226 (451)
T PRK06305 205 LLPIA-RAA------QGSLRDAESLYDYV 226 (451)
T ss_pred HHHHH-HHc------CCCHHHHHHHHHHH
Confidence 66444 555 45566666667665
No 203
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.62 E-value=4e-15 Score=138.03 Aligned_cols=130 Identities=17% Similarity=0.084 Sum_probs=108.6
Q ss_pred CCCccCccCC-----CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCC
Q 013316 1 MQKNQDRRSR-----SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK 75 (445)
Q Consensus 1 l~~~~~~~~~-----~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g 75 (445)
++.|++++.. ..|.||||+|+..|+.++++.|+ .+|+++|..++..|.||||+|+..++.+++++|+.+ |
T Consensus 53 L~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL-~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~----G 127 (300)
T PHA02884 53 LKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLI-RYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSY----G 127 (300)
T ss_pred HHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHC----C
Confidence 4679999985 37999999999999999998777 479999986533699999999999999999999995 8
Q ss_pred cccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316 76 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144 (445)
Q Consensus 76 ~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~ 144 (445)
++++.+|..|.||||+|+..++.+++.++. |.. .+..+.+|. .+. .+.+++++|.+++.-
T Consensus 128 Adin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~~~~-~~~---~n~ei~~~Lish~vl 187 (300)
T PHA02884 128 ADINIQTNDMVTPIELALMICNNFLAFMIC--DNE---ISNFYKHPK-KIL---INFDILKILVSHFIL 187 (300)
T ss_pred CCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc---ccccccChh-hhh---ccHHHHHHHHHHHHH
Confidence 999999999999999999999888876554 332 456677887 432 357899999999874
No 204
>PHA02730 ankyrin-like protein; Provisional
Probab=99.61 E-value=4.9e-15 Score=149.71 Aligned_cols=132 Identities=17% Similarity=0.068 Sum_probs=114.5
Q ss_pred CCCCchHhHHHHHcC---CHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCC--cHHHHHHhhcCCCCCCcccccccCC
Q 013316 10 RSAKPATIHGCAQSG---DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQNMY 84 (445)
Q Consensus 10 ~~~~~t~L~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~g~~v~~~d~~ 84 (445)
...|.||||+|+..| +.++++.|| .+|++++.+|. .|+||||+|+..+ +.++|++|++.+ .+++++..+.-
T Consensus 38 d~~G~TaLh~A~~~~~~~~~eivklLL-s~GAdin~kD~-~G~TPLh~Aa~~~~~~~eIv~~Ll~~~--~~~~~~~~~~~ 113 (672)
T PHA02730 38 DRRGNNALHCYVSNKCDTDIKIVRLLL-SRGVERLCRNN-EGLTPLGVYSKRKYVKSQIVHLLISSY--SNASNELTSNI 113 (672)
T ss_pred CCCCCcHHHHHHHcCCcCcHHHHHHHH-hCCCCCcccCC-CCCChHHHHHHcCCCcHHHHHHHHhcC--CCCCccccccc
Confidence 347999999999997 589998777 57999999997 8999999999976 799999999963 24566878888
Q ss_pred CCcHHHHHHH--cCCHHHHHHHHh-cCCCCccccc-----CCCChhhhhhcCCCChHHHHHHHhhhhhHH
Q 013316 85 GETPLHMAAK--NGCNEAAKLLLA-HGAFIEAKAN-----EGKTPLDHLSNGPGSAKLRELLLWHSEEQR 146 (445)
Q Consensus 85 g~tpLh~A~~--~g~~~~~~~Ll~-~ga~~~~~~~-----~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~ 146 (445)
+.+|||.++. .++.+++++|+. .|++++...+ +|-+|+ +++...++.+++++|+.+|++..
T Consensus 114 ~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~-yl~~~~~~~eIvklLi~~g~~v~ 182 (672)
T PHA02730 114 NDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDI-YVTTPNPRPEVLLWLLKSECYST 182 (672)
T ss_pred CCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhh-hHhcCCCchHHHHHHHHcCCccc
Confidence 9999999988 899999999996 7789876643 789999 99999999999999999999874
No 205
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=3.9e-14 Score=143.86 Aligned_cols=193 Identities=16% Similarity=0.220 Sum_probs=126.1
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 237 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~-------- 237 (445)
..|++++|++.+++.|++.+.. ...+..+||+||+|||||++|+.+|+.+.+.....
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~---------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRM---------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 3678899999999988886542 23455699999999999999999999997632110
Q ss_pred -CCCeEEeeccccc-------ccccCC---chhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHH
Q 013316 238 -TDRVTEVQRTDLV-------GEFVGH---TGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEE 299 (445)
Q Consensus 238 -~~~~~~~~~~~l~-------~~~~g~---~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ 299 (445)
...-.+-+|..+. ..+-|. ....++.+.+.. ...|++|||+|.+.. ..++.
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~-----------~a~na 146 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST-----------AAFNA 146 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-----------HHHHH
Confidence 0000011111110 001111 123445544333 457999999998875 66889
Q ss_pred HHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHH
Q 013316 300 IMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD 377 (445)
Q Consensus 300 ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 377 (445)
|++.|++ ...++|++++.. ..+ -+.+++|+ ..+.|.+++.+++...+...+++.. ..++.+
T Consensus 147 LLK~LEePp~~tv~IL~t~~~--~kL---l~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~eg-----------i~I~~e 209 (620)
T PRK14954 147 FLKTLEEPPPHAIFIFATTEL--HKI---PATIASRC-QRFNFKRIPLDEIQSQLQMICRAEG-----------IQIDAD 209 (620)
T ss_pred HHHHHhCCCCCeEEEEEeCCh--hhh---hHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcC-----------CCCCHH
Confidence 9999987 456666665432 222 46789998 8999999999999999888777541 245666
Q ss_pred HHHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316 378 AIAALIEKETTEKQRREMNGGLVDPMLVNAR 408 (445)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~ 408 (445)
++.. +...+ .|+.|.+.+.+++..
T Consensus 210 al~~-La~~s------~Gdlr~al~eLeKL~ 233 (620)
T PRK14954 210 ALQL-IARKA------QGSMRDAQSILDQVI 233 (620)
T ss_pred HHHH-HHHHh------CCCHHHHHHHHHHHH
Confidence 7664 44555 455666666676653
No 206
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.60 E-value=7.2e-15 Score=142.11 Aligned_cols=158 Identities=20% Similarity=0.211 Sum_probs=105.9
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC---------
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--------- 237 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~--------- 237 (445)
.|++|+|++.+++.|++.+..-.- .....+...+..+||+||||+|||++|+.+|+.+.+.....
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~------~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C 76 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA------DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRAC 76 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc------cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHH
Confidence 578899999999999987653210 00111222466799999999999999999999886632100
Q ss_pred ------CCC-eEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhh
Q 013316 238 ------TDR-VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV 303 (445)
Q Consensus 238 ------~~~-~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~ 303 (445)
..| +..+.+.. .. -.-..++++++.+ ...|+||||+|.+.+ ..++.|++.
T Consensus 77 ~~~~~~~hpD~~~i~~~~---~~--i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~-----------~aanaLLk~ 140 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEG---LS--IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE-----------RAANALLKA 140 (394)
T ss_pred HHHhcCCCCCEEEecccc---cc--CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH-----------HHHHHHHHH
Confidence 001 11111110 00 1223456666544 336999999999976 677899999
Q ss_pred ccC---CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHH
Q 013316 304 MDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILH 353 (445)
Q Consensus 304 ~~~---~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~ 353 (445)
|++ +.++++++++.. . ..|++++|| ..+.|++|+.+++.+.+.
T Consensus 141 LEep~~~~~fIL~a~~~~---~---llpTIrSRc-~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 141 VEEPPPRTVWLLCAPSPE---D---VLPTIRSRC-RHVALRTPSVEAVAEVLV 186 (394)
T ss_pred hhcCCCCCeEEEEECChH---H---ChHHHHhhC-eEEECCCCCHHHHHHHHH
Confidence 987 445555554422 2 268899999 899999999999888776
No 207
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=6.3e-14 Score=143.54 Aligned_cols=186 Identities=19% Similarity=0.251 Sum_probs=124.4
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 237 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~-------- 237 (445)
..|++++|++.+++.|..++.. ...+..+||+||+|||||++|+.+++.+.+.....
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~---------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAE---------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh---------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 3678899999999998876542 12344579999999999999999999986522100
Q ss_pred ----------CCCeEEeecccccccccCCchhHHHHHHHH-------ccCcEEEEcCccccccCCCCCCchhHHHHHHHH
Q 013316 238 ----------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEI 300 (445)
Q Consensus 238 ----------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~-------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~l 300 (445)
...+++++.+.. ..-..++.+++. +...|+||||+|.+.. +.++.|
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~~------~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~naL 140 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAASH------TSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFNAL 140 (585)
T ss_pred HHHHHHhcCCCCeEEEEecccc------CCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHHHH
Confidence 011233332111 122334444432 2458999999998875 678889
Q ss_pred HhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHH
Q 013316 301 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 378 (445)
Q Consensus 301 l~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 378 (445)
++.+++ ...++|++++.. ..+ .+.+++|+ ..+.|+.++..++..++...+.+.. ..++.++
T Consensus 141 Lk~LEepp~~tv~Il~t~~~--~kl---l~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~eg-----------l~i~~ea 203 (585)
T PRK14950 141 LKTLEEPPPHAIFILATTEV--HKV---PATILSRC-QRFDFHRHSVADMAAHLRKIAAAEG-----------INLEPGA 203 (585)
T ss_pred HHHHhcCCCCeEEEEEeCCh--hhh---hHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence 998886 455566554432 222 46688898 7899999999999999988877641 2355667
Q ss_pred HHHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316 379 IAALIEKETTEKQRREMNGGLVDPMLVNA 407 (445)
Q Consensus 379 l~~~~~~~~~~~~~~~~n~r~l~~~~~~~ 407 (445)
+..+. ..+ .||.|.+.+.+++.
T Consensus 204 l~~La-~~s------~Gdlr~al~~LekL 225 (585)
T PRK14950 204 LEAIA-RAA------TGSMRDAENLLQQL 225 (585)
T ss_pred HHHHH-HHc------CCCHHHHHHHHHHH
Confidence 66444 454 46677777777765
No 208
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.60 E-value=2.6e-14 Score=136.87 Aligned_cols=187 Identities=26% Similarity=0.319 Sum_probs=119.6
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
..|++++|++.+++.+..++. ....++++|+||||||||++|+.+++.+...+. ...++.++
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~----------------~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~--~~~~i~~~ 75 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVK----------------EKNMPHLLFAGPPGTGKTTAALALARELYGEDW--RENFLELN 75 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHh----------------CCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc--ccceEEec
Confidence 357789999999988888653 223457999999999999999999998754321 22456665
Q ss_pred cccccccccCCchhHHHHHHH-----HccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCch
Q 013316 246 RTDLVGEFVGHTGPKTRRRIK-----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSE 318 (445)
Q Consensus 246 ~~~l~~~~~g~~~~~~~~~~~-----~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~ 318 (445)
+++..+.. .....+..... .+...+|+|||+|.+.. ..++.|+..++. ....+|++++..
T Consensus 76 ~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----------~~~~~L~~~le~~~~~~~lIl~~~~~ 142 (319)
T PRK00440 76 ASDERGID--VIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----------DAQQALRRTMEMYSQNTRFILSCNYS 142 (319)
T ss_pred cccccchH--HHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----------HHHHHHHHHHhcCCCCCeEEEEeCCc
Confidence 54321100 00011111111 12346999999998865 344566666653 334444444322
Q ss_pred hHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCch
Q 013316 319 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG 398 (445)
Q Consensus 319 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r 398 (445)
. . ..+++.+|+ ..+.|++++.+++..+++.++++.. ..++++++..+. ..+ .||.|
T Consensus 143 ~--~---l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~-----------~~i~~~al~~l~-~~~------~gd~r 198 (319)
T PRK00440 143 S--K---IIDPIQSRC-AVFRFSPLKKEAVAERLRYIAENEG-----------IEITDDALEAIY-YVS------EGDMR 198 (319)
T ss_pred c--c---cchhHHHHh-heeeeCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHH-HHc------CCCHH
Confidence 1 1 145678888 5799999999999999999887642 245677877555 444 45666
Q ss_pred hhHHHHHHH
Q 013316 399 LVDPMLVNA 407 (445)
Q Consensus 399 ~l~~~~~~~ 407 (445)
.+.+.++.+
T Consensus 199 ~~~~~l~~~ 207 (319)
T PRK00440 199 KAINALQAA 207 (319)
T ss_pred HHHHHHHHH
Confidence 677777765
No 209
>PRK06893 DNA replication initiation factor; Validated
Probab=99.59 E-value=4.1e-14 Score=128.16 Aligned_cols=185 Identities=12% Similarity=0.173 Sum_probs=111.6
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc-cCcEEEEcCccccccCC
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQ 285 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~l~~~~ 285 (445)
+.++|+||||||||++++++++++...+. ....++..... ....+.++.. ...+|+|||++.+.+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~----~~~y~~~~~~~--------~~~~~~~~~~~~~dlLilDDi~~~~~~~ 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQR----TAIYIPLSKSQ--------YFSPAVLENLEQQDLVCLDDLQAVIGNE 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC----CeEEeeHHHhh--------hhhHHHHhhcccCCEEEEeChhhhcCCh
Confidence 45899999999999999999999865332 33333332210 0111233333 34699999999987532
Q ss_pred CCCCchhHHHHHHHHH-hhccCCcEEEEEecCchhHHHHHhhCccccccc--ccceeCCCCCHHHHHHHHHHHHhccccc
Q 013316 286 KADDKDYGIEALEEIM-SVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTED 362 (445)
Q Consensus 286 ~~~~~~~~~~~~~~ll-~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~~~ 362 (445)
. ..+.+-.++ ...+.+..++|++++..+.. +-...|.|++|+ ...+.+++|+.+++.+|++..+...
T Consensus 108 ~------~~~~l~~l~n~~~~~~~~illits~~~p~~-l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~--- 177 (229)
T PRK06893 108 E------WELAIFDLFNRIKEQGKTLLLISADCSPHA-LSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR--- 177 (229)
T ss_pred H------HHHHHHHHHHHHHHcCCcEEEEeCCCChHH-ccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc---
Confidence 1 112222222 22233444444443332222 111258899987 3688999999999999999887653
Q ss_pred ccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316 363 SLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 438 (445)
Q Consensus 363 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~ 438 (445)
.-.++++++..+..+ + .++.|.+.+++++..+ .. . .....||...+++++.
T Consensus 178 --------~l~l~~~v~~~L~~~-~------~~d~r~l~~~l~~l~~-~~--~-------~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 178 --------GIELSDEVANFLLKR-L------DRDMHTLFDALDLLDK-AS--L-------QAQRKLTIPFVKEILG 228 (229)
T ss_pred --------CCCCCHHHHHHHHHh-c------cCCHHHHHHHHHHHHH-HH--H-------hcCCCCCHHHHHHHhc
Confidence 124566777755544 3 5678888888887621 11 1 0112588888887653
No 210
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.59 E-value=4.1e-16 Score=134.89 Aligned_cols=151 Identities=25% Similarity=0.344 Sum_probs=75.5
Q ss_pred HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC------------
Q 013316 168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI------------ 235 (445)
Q Consensus 168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~------------ 235 (445)
|.+|+||+.+|+.+.-.+ ....|+||+||||||||++|+.++..+.....
T Consensus 2 f~dI~GQe~aKrAL~iAA------------------aG~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~ 63 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAA------------------AGGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSV 63 (206)
T ss_dssp TCCSSSTHHHHHHHHHHH------------------HCC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT
T ss_pred hhhhcCcHHHHHHHHHHH------------------cCCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccc
Confidence 568999999998887532 13579999999999999999999987743211
Q ss_pred ---------CCCCCeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC
Q 013316 236 ---------LPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG 306 (445)
Q Consensus 236 ---------~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~ 306 (445)
+...||.....+.-...++|.........+..|.+|||||||+ +.+...+++.|++.+++
T Consensus 64 ~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~-----------~ef~~~vld~Lr~ple~ 132 (206)
T PF01078_consen 64 AGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDEL-----------NEFDRSVLDALRQPLED 132 (206)
T ss_dssp ---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECET-----------TTS-HHHHHHHHHHHHH
T ss_pred ccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechh-----------hhcCHHHHHHHHHHHHC
Confidence 1122333333332222233322222223567889999999999 66667999999999987
Q ss_pred Cc---------------EEEEEecCchhHHHHH------------------hhCcccccccccceeCCCCCHHH
Q 013316 307 GK---------------VVVIFAGYSEPMKRVI------------------ASNEGFCRRVTKFFHFNDFNSEE 347 (445)
Q Consensus 307 ~~---------------~~~i~a~~~~~~~~~~------------------~~~~~l~~R~~~~i~~~~~~~~~ 347 (445)
+. +.+|+|.|+-+=-.+. ....+|++|||..+.++..+.+|
T Consensus 133 g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 133 GEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp SBEEEEETTEEEEEB--EEEEEEE-S------------------------------------------------
T ss_pred CeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 53 4777776544332211 11255777888888777776543
No 211
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.59 E-value=8.1e-15 Score=125.97 Aligned_cols=180 Identities=23% Similarity=0.294 Sum_probs=118.2
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
..+.+|+|.++..+++.-+.+ .+..+|++|.|||||||||.+.++|+++- |...+..+.+++
T Consensus 24 ~~l~dIVGNe~tv~rl~via~----------------~gnmP~liisGpPG~GKTTsi~~LAr~LL--G~~~ke~vLELN 85 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAK----------------EGNMPNLIISGPPGTGKTTSILCLARELL--GDSYKEAVLELN 85 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHH----------------cCCCCceEeeCCCCCchhhHHHHHHHHHh--ChhhhhHhhhcc
Confidence 457889999999998887544 34667999999999999999999999873 222344678888
Q ss_pred cccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc--CCcEEEEEe-c
Q 013316 246 RTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD--GGKVVVIFA-G 315 (445)
Q Consensus 246 ~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~i~a-~ 315 (445)
+|+-.+..+ -.+..+.|.+. +..|++|||+|+... .+|..|-+-|+ ++.-.+.++ +
T Consensus 86 ASdeRGIDv---VRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~-----------gAQQAlRRtMEiyS~ttRFalaCN 151 (333)
T KOG0991|consen 86 ASDERGIDV---VRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA-----------GAQQALRRTMEIYSNTTRFALACN 151 (333)
T ss_pred CccccccHH---HHHHHHHHHHhhccCCCCceeEEEeeccchhhh-----------HHHHHHHHHHHHHcccchhhhhhc
Confidence 887544321 12223455433 348999999998876 44555555554 233333333 3
Q ss_pred CchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316 316 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 395 (445)
Q Consensus 316 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 395 (445)
....+ -+++.+|| ..++|..++..++..-+....+... + ..+++.++.++ .-..||+|...
T Consensus 152 ~s~KI------iEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ek-------v----~yt~dgLeaii-fta~GDMRQal 212 (333)
T KOG0991|consen 152 QSEKI------IEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEK-------V----NYTDDGLEAII-FTAQGDMRQAL 212 (333)
T ss_pred chhhh------hhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhC-------C----CCCcchHHHhh-hhccchHHHHH
Confidence 33333 24567788 8889999999888777776665432 2 34445666544 44556776655
Q ss_pred C
Q 013316 396 N 396 (445)
Q Consensus 396 n 396 (445)
|
T Consensus 213 N 213 (333)
T KOG0991|consen 213 N 213 (333)
T ss_pred H
Confidence 4
No 212
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.58 E-value=1.8e-14 Score=143.16 Aligned_cols=153 Identities=22% Similarity=0.273 Sum_probs=107.5
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHc-------------
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV------------- 233 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~------------- 233 (445)
.|.++.|++.+++.+.-. .....+++|.||||||||++|+.++..+...
T Consensus 190 d~~dv~Gq~~~~~al~~a------------------a~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s 251 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIA------------------AAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWS 251 (499)
T ss_pred CHHHhcCcHHHHhhhhhh------------------ccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEecccccc
Confidence 678899999887655532 3345789999999999999999999754210
Q ss_pred --------CCCCCCCeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc
Q 013316 234 --------GILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 305 (445)
Q Consensus 234 --------~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~ 305 (445)
......||...+++......+|.........+..|.+|||||||++.+.+ .+++.|++.|+
T Consensus 252 ~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~-----------~~~~~L~~~LE 320 (499)
T TIGR00368 252 LVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKR-----------SVLDALREPIE 320 (499)
T ss_pred chhhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCH-----------HHHHHHHHHHH
Confidence 00223466666666544445553322334578899999999999977765 78888888887
Q ss_pred CC---------------cEEEEEecCchh-----------------H-HHHHhhCcccccccccceeCCCCCHHHH
Q 013316 306 GG---------------KVVVIFAGYSEP-----------------M-KRVIASNEGFCRRVTKFFHFNDFNSEEL 348 (445)
Q Consensus 306 ~~---------------~~~~i~a~~~~~-----------------~-~~~~~~~~~l~~R~~~~i~~~~~~~~~~ 348 (445)
++ ++.+|+++++-+ . .......++|++|||..+.+++++.+++
T Consensus 321 ~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 321 DGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKL 396 (499)
T ss_pred cCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHH
Confidence 64 357788777532 0 1122456889999999999998876554
No 213
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.58 E-value=1.5e-14 Score=136.51 Aligned_cols=160 Identities=21% Similarity=0.267 Sum_probs=104.7
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC--------
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-------- 238 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~-------- 238 (445)
.|.+++|++.++..+.-.+ + .....|+||+|+||||||++||+++..+........
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~--~--------------~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTA--I--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CHHHhCCHHHHHHHHHHHH--h--------------ccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 3678999999987766411 0 012368999999999999999999999842111100
Q ss_pred ------------------CCeEEeecccccccccCC--------chh-HH-HHHHHHccCcEEEEcCccccccCCCCCCc
Q 013316 239 ------------------DRVTEVQRTDLVGEFVGH--------TGP-KT-RRRIKEAEGGILFVDEAYRLIPMQKADDK 290 (445)
Q Consensus 239 ------------------~~~~~~~~~~l~~~~~g~--------~~~-~~-~~~~~~a~~~il~lDEid~l~~~~~~~~~ 290 (445)
.+|+.+..+.-...++|. ++. .. ...+..+.+|+||||||+.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~------- 142 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED------- 142 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH-------
Confidence 122222222222224442 011 11 2245567789999999988876
Q ss_pred hhHHHHHHHHHhhccCCc---------------EEEEEecCchhHHHHHhhCcccccccccceeCCCCCH-HHHHHHHHH
Q 013316 291 DYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKILHI 354 (445)
Q Consensus 291 ~~~~~~~~~ll~~~~~~~---------------~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~-~~~~~il~~ 354 (445)
+.++.|++.|+++. +++|++.++..- . ..++|.+||...+.++.|+. +++.+|+..
T Consensus 143 ----~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~-~---l~~aLldRF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 143 ----HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEG-E---LRPQLLDRFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred ----HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccC-C---CCHHHHhhcceEEEcCCCCcHHHHHHHHHH
Confidence 78889999887643 455555444221 1 36789999999999998886 888999987
Q ss_pred HHh
Q 013316 355 KMN 357 (445)
Q Consensus 355 ~l~ 357 (445)
...
T Consensus 215 ~~~ 217 (334)
T PRK13407 215 RDA 217 (334)
T ss_pred hhc
Confidence 543
No 214
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.58 E-value=7.4e-14 Score=131.94 Aligned_cols=159 Identities=21% Similarity=0.277 Sum_probs=108.9
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeE----
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT---- 242 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~---- 242 (445)
-|.+|+|++++|..|.-.+. .....++||.||+|||||++||.+++.+.....+...+|.
T Consensus 15 pf~~ivGq~~~k~al~~~~~----------------~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVI----------------DPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CHHHHhChHHHHHHHHHhcc----------------CCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 36789999999988775311 2345689999999999999999999999765554444443
Q ss_pred -----------------------------EeecccccccccCCc--hhH--------HHHHHHHccCcEEEEcCcccccc
Q 013316 243 -----------------------------EVQRTDLVGEFVGHT--GPK--------TRRRIKEAEGGILFVDEAYRLIP 283 (445)
Q Consensus 243 -----------------------------~~~~~~l~~~~~g~~--~~~--------~~~~~~~a~~~il~lDEid~l~~ 283 (445)
.+....-...++|.- ++. ....+.+|.+|+||||||+.+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 111111222233320 000 12245677889999999988887
Q ss_pred CCCCCCchhHHHHHHHHHhhccCC---------------cEEEEEecCchhHHHHHhhCcccccccccceeCCCCC-HHH
Q 013316 284 MQKADDKDYGIEALEEIMSVMDGG---------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEE 347 (445)
Q Consensus 284 ~~~~~~~~~~~~~~~~ll~~~~~~---------------~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~~ 347 (445)
..|+.|+..|+++ ++++|++.++..- . ..++|.+||...+.+..|+ .++
T Consensus 159 -----------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg-~---l~~~LldRf~l~i~l~~~~~~~~ 223 (350)
T CHL00081 159 -----------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEG-E---LRPQLLDRFGMHAEIRTVKDPEL 223 (350)
T ss_pred -----------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccC-C---CCHHHHHHhCceeecCCCCChHH
Confidence 7788888888653 2344554443321 2 3788999999999999998 699
Q ss_pred HHHHHHHHH
Q 013316 348 LAKILHIKM 356 (445)
Q Consensus 348 ~~~il~~~l 356 (445)
+.+|++...
T Consensus 224 e~~il~~~~ 232 (350)
T CHL00081 224 RVKIVEQRT 232 (350)
T ss_pred HHHHHHhhh
Confidence 999998754
No 215
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=6.5e-14 Score=143.07 Aligned_cols=185 Identities=21% Similarity=0.278 Sum_probs=126.3
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC--------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 237 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~-------- 237 (445)
..|++++|++.++..|.+++..- ....++||+||+|||||++|+++|+.+.+.....
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~---------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISN---------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcC---------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 46788999999999988865421 2346899999999999999999999997632110
Q ss_pred -----------CCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHH
Q 013316 238 -----------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEE 299 (445)
Q Consensus 238 -----------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ 299 (445)
...+++++.. .+..-..++++++.+ ...|+||||+|.+.. ++++.
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-----------~a~na 140 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-----------AAFNA 140 (620)
T ss_pred cHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-----------HHHHH
Confidence 0012222211 111334566666554 347999999999875 67899
Q ss_pred HHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHH
Q 013316 300 IMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD 377 (445)
Q Consensus 300 ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 377 (445)
|++.|++ ..+++|++++... .+ -|.+++|+ ..+.|+.++.+++...+...+.+.. ..++.+
T Consensus 141 LLK~LEePp~~tvfIL~t~~~~--~l---lpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~keg-----------i~is~~ 203 (620)
T PRK14948 141 LLKTLEEPPPRVVFVLATTDPQ--RV---LPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKES-----------IEIEPE 203 (620)
T ss_pred HHHHHhcCCcCeEEEEEeCChh--hh---hHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhC-----------CCCCHH
Confidence 9999987 5677777765422 22 57899998 8899999999999988887776531 245556
Q ss_pred HHHHHHHHHHHHhhhcccCchhhHHHHHH
Q 013316 378 AIAALIEKETTEKQRREMNGGLVDPMLVN 406 (445)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~n~r~l~~~~~~ 406 (445)
++. .+...++ |+.|.+.+++++
T Consensus 204 al~-~La~~s~------G~lr~A~~lLek 225 (620)
T PRK14948 204 ALT-LVAQRSQ------GGLRDAESLLDQ 225 (620)
T ss_pred HHH-HHHHHcC------CCHHHHHHHHHH
Confidence 655 5555654 444455555554
No 216
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=3.9e-14 Score=139.53 Aligned_cols=173 Identities=18% Similarity=0.174 Sum_probs=111.7
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHH--ccCcEEEEcCcccccc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLIP 283 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~--a~~~il~lDEid~l~~ 283 (445)
..+++||||||+|||++++++++.+...+ ..++.+++..+...+...-.......|.. ....+|+||||+.+.+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~----~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESG----GKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSG 216 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcC----CCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcC
Confidence 46799999999999999999999987543 36777877765443321100000112222 2346999999999875
Q ss_pred CCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc-hhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhccc
Q 013316 284 MQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS-EPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQT 360 (445)
Q Consensus 284 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~-~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~ 360 (445)
+.. ...+....+-...+.++.+++.++.. ..+.. .++.|++||. ..+.+++|+.+++..|++..+...
T Consensus 217 k~~-----~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~---l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~- 287 (445)
T PRK12422 217 KGA-----TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKA---MEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEAL- 287 (445)
T ss_pred Chh-----hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhh---hHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHc-
Confidence 321 01112211222233455555555432 23322 3789999995 788999999999999999988763
Q ss_pred ccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316 361 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAR 408 (445)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~ 408 (445)
...++++++..++... .+|.|+|.+.+++..
T Consensus 288 ----------~~~l~~evl~~la~~~-------~~dir~L~g~l~~l~ 318 (445)
T PRK12422 288 ----------SIRIEETALDFLIEAL-------SSNVKSLLHALTLLA 318 (445)
T ss_pred ----------CCCCCHHHHHHHHHhc-------CCCHHHHHHHHHHHH
Confidence 1345667777565543 578888888888874
No 217
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.58 E-value=6.2e-15 Score=125.42 Aligned_cols=99 Identities=21% Similarity=0.225 Sum_probs=86.4
Q ss_pred CCCCchHhHHHHHcCCHH---HHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCC
Q 013316 10 RSAKPATIHGCAQSGDLL---AFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (445)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~---~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~ 86 (445)
...|.||||+||..|+.+ .++.|+ ..+.++|.++...|+||||+|+..++.+++++|+.. .|++++.+|..|.
T Consensus 52 d~~g~t~Lh~a~~~~~~~~~e~v~~Ll-~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~---~g~d~n~~~~~g~ 127 (154)
T PHA02736 52 NRHGKQCVHIVSNPDKADPQEKLKLLM-EWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQ---PGVNMEILNYAFK 127 (154)
T ss_pred cCCCCEEEEeecccCchhHHHHHHHHH-HcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhC---CCCCCccccCCCC
Confidence 347999999999999875 355444 578999998743699999999999999999999974 3789999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCCc
Q 013316 87 TPLHMAAKNGCNEAAKLLLAHGAFIE 112 (445)
Q Consensus 87 tpLh~A~~~g~~~~~~~Ll~~ga~~~ 112 (445)
||||+|+..|+.+++++|+.+|++++
T Consensus 128 tpL~~A~~~~~~~i~~~Ll~~ga~~~ 153 (154)
T PHA02736 128 TPYYVACERHDAKMMNILRAKGAQCK 153 (154)
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 99999999999999999999999865
No 218
>PHA02741 hypothetical protein; Provisional
Probab=99.57 E-value=5e-15 Score=127.89 Aligned_cols=117 Identities=24% Similarity=0.230 Sum_probs=96.8
Q ss_pred CCCCCCCCChHHHHHHhCCcHHHHHHhhcCC--CCCCcccccccCCCCcHHHHHHHcCC----HHHHHHHHhcCCCCccc
Q 013316 41 NERNPVMAQTPLHVSAGYNKAEIVKSLLEWP--GNDKVELEAQNMYGETPLHMAAKNGC----NEAAKLLLAHGAFIEAK 114 (445)
Q Consensus 41 ~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~--~~~g~~v~~~d~~g~tpLh~A~~~g~----~~~~~~Ll~~ga~~~~~ 114 (445)
+.++. .|.||||+|+..|+.+++++|+... ...|++++.+|..|.||||+|+..|+ .+++++|+..|++++.+
T Consensus 15 ~~~~~-~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~ 93 (169)
T PHA02741 15 AEKNS-EGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ 93 (169)
T ss_pred hcccc-CCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence 34554 6999999999999999999885421 11367899999999999999999998 58899999999999999
Q ss_pred cc-CCCChhhhhhcCCCChHHHHHHHh-hhhhHHhhhhhhhhhhhHH
Q 013316 115 AN-EGKTPLDHLSNGPGSAKLRELLLW-HSEEQRKRRALEACSETKA 159 (445)
Q Consensus 115 ~~-~g~tpl~~~a~~~~~~~i~~~ll~-~~~~~~~~~~~~~~~~~~a 159 (445)
+. +|+||| |+|+..++.+++++|+. .+.+....+..+.++...+
T Consensus 94 ~~~~g~TpL-h~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A 139 (169)
T PHA02741 94 EMLEGDTAL-HLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELA 139 (169)
T ss_pred CcCCCCCHH-HHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHH
Confidence 85 999999 88888899999999997 5777776666665665543
No 219
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=1.4e-13 Score=140.61 Aligned_cols=187 Identities=16% Similarity=0.252 Sum_probs=128.0
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCC---------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--------- 236 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~--------- 236 (445)
..|++++|++.+++.|...+.. ...+..+||+||+|+|||++|+.+|+.+.+....
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~---------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C 78 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIAT---------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC 78 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence 3578899999999988886542 1234458999999999999999999998643210
Q ss_pred ---------CCCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHH
Q 013316 237 ---------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEI 300 (445)
Q Consensus 237 ---------~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~l 300 (445)
....+..+++++- .+...++.+++++ ...|++|||+|.+.. ..++.|
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~naL 141 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFNAF 141 (614)
T ss_pred hHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHHHH
Confidence 0112333333211 1234456666443 347999999999975 678899
Q ss_pred HhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHH
Q 013316 301 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 378 (445)
Q Consensus 301 l~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 378 (445)
++.|++ ...++|++++... . +-+.+++|+ ..++|++++.+++...+...+.+.. ..+++++
T Consensus 142 LK~LEepp~~tifIL~tt~~~--k---Il~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~eg-----------i~i~~~a 204 (614)
T PRK14971 142 LKTLEEPPSYAIFILATTEKH--K---ILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEG-----------ITAEPEA 204 (614)
T ss_pred HHHHhCCCCCeEEEEEeCCch--h---chHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence 999987 4566777665432 2 257899998 8899999999999999998887642 2345566
Q ss_pred HHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316 379 IAALIEKETTEKQRREMNGGLVDPMLVNAR 408 (445)
Q Consensus 379 l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~ 408 (445)
+. .+...+ .++.|.+.+.+++..
T Consensus 205 l~-~La~~s------~gdlr~al~~Lekl~ 227 (614)
T PRK14971 205 LN-VIAQKA------DGGMRDALSIFDQVV 227 (614)
T ss_pred HH-HHHHHc------CCCHHHHHHHHHHHH
Confidence 65 444555 355566666666653
No 220
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.56 E-value=4.3e-14 Score=145.94 Aligned_cols=159 Identities=22% Similarity=0.224 Sum_probs=111.7
Q ss_pred HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC------------
Q 013316 168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI------------ 235 (445)
Q Consensus 168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~------------ 235 (445)
|..|+|++.++..+.-.. + .....+|||.||||||||++||+|++.+.....
T Consensus 3 f~~ivGq~~~~~al~~~a--v--------------~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~ 66 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNA--V--------------DPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDD 66 (633)
T ss_pred cchhcChHHHHHHHHHHh--h--------------CCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCC
Confidence 457999999887665321 1 123457999999999999999999998731000
Q ss_pred ----------------CCCCCeEEeecccccccccCCch--h--------HHHHHHHHccCcEEEEcCccccccCCCCCC
Q 013316 236 ----------------LPTDRVTEVQRTDLVGEFVGHTG--P--------KTRRRIKEAEGGILFVDEAYRLIPMQKADD 289 (445)
Q Consensus 236 ----------------~~~~~~~~~~~~~l~~~~~g~~~--~--------~~~~~~~~a~~~il~lDEid~l~~~~~~~~ 289 (445)
....+|+.+.++.....++|... . .....+..|.+||||||||+.+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~------ 140 (633)
T TIGR02442 67 PEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD------ 140 (633)
T ss_pred ccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH------
Confidence 11347888877766666666411 0 113356677889999999988887
Q ss_pred chhHHHHHHHHHhhccCCc---------------EEEEEecCchhHHHHHhhCcccccccccceeCCCCC-HHHHHHHHH
Q 013316 290 KDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEELAKILH 353 (445)
Q Consensus 290 ~~~~~~~~~~ll~~~~~~~---------------~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~~~~~il~ 353 (445)
..++.|+..|+.+. +.+|++.++..- ...++|++||+..|.++.+. .+++.+++.
T Consensus 141 -----~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg----~l~~~L~dR~~l~i~v~~~~~~~~~~~il~ 211 (633)
T TIGR02442 141 -----HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEG----DLRPQLLDRFGLCVDVAAPRDPEERVEIIR 211 (633)
T ss_pred -----HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCC----CCCHHHHhhcceEEEccCCCchHHHHHHHH
Confidence 78899999998652 566666554321 13678999999889888876 577788887
Q ss_pred HHHh
Q 013316 354 IKMN 357 (445)
Q Consensus 354 ~~l~ 357 (445)
..+.
T Consensus 212 ~~~~ 215 (633)
T TIGR02442 212 RRLA 215 (633)
T ss_pred HHHh
Confidence 6443
No 221
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4.9e-14 Score=133.26 Aligned_cols=172 Identities=14% Similarity=0.207 Sum_probs=121.0
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|+.++-..+.|++|.+=+. -....++.+...+..=..+-|||||||||||++.-|+|..++. .+..++.
T Consensus 199 tF~TlaMd~~~K~~I~~Dl~---~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~y-------dIydLeL 268 (457)
T KOG0743|consen 199 TFETLAMDPDLKERIIDDLD---DFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNY-------DIYDLEL 268 (457)
T ss_pred CccccccChhHHHHHHHHHH---HHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCC-------ceEEeee
Confidence 45556666666766655222 2223444455556656679999999999999999999999876 5665655
Q ss_pred ccccccccCCchhHHHHHHHHcc-CcEEEEcCccccccCCC--CC----Cc-hhHHHHHHHHHhhccC------CcEEEE
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEAE-GGILFVDEAYRLIPMQK--AD----DK-DYGIEALEEIMSVMDG------GKVVVI 312 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a~-~~il~lDEid~l~~~~~--~~----~~-~~~~~~~~~ll~~~~~------~~~~~i 312 (445)
++.. ....+++++..+. .+||+|++||.-...+. .. .. ....-.++-||.++|+ +..++|
T Consensus 269 t~v~------~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIiv 342 (457)
T KOG0743|consen 269 TEVK------LDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIV 342 (457)
T ss_pred cccc------CcHHHHHHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEE
Confidence 5442 2334888887775 49999999999865222 11 11 1223456778999886 345666
Q ss_pred EecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcc
Q 013316 313 FAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQ 359 (445)
Q Consensus 313 ~a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~ 359 (445)
++|+..+- .||+|.| |+|.+|+++.=+.++...++..|+.-.
T Consensus 343 FTTNh~Ek-----LDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~ 386 (457)
T KOG0743|consen 343 FTTNHKEK-----LDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIE 386 (457)
T ss_pred EecCChhh-----cCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCC
Confidence 66554332 3999999 999999999999999999999999863
No 222
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.56 E-value=8.3e-15 Score=112.27 Aligned_cols=88 Identities=40% Similarity=0.560 Sum_probs=78.7
Q ss_pred HHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCC
Q 013316 52 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGS 131 (445)
Q Consensus 52 Lh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~ 131 (445)
||+|+..|+++++++|++. +.+++. |.||||+|+..|+.+++++|++.|++++.+|.+|+||| +.|+..++
T Consensus 1 L~~A~~~~~~~~~~~ll~~----~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~ 71 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEK----GADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTAL-HYAAENGN 71 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHT----TSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHH-HHHHHTTH
T ss_pred CHHHHHcCCHHHHHHHHHC----cCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHH-HHHHHcCC
Confidence 7999999999999999995 666665 88999999999999999999999999999999999999 77888999
Q ss_pred hHHHHHHHhhhhhHHhh
Q 013316 132 AKLRELLLWHSEEQRKR 148 (445)
Q Consensus 132 ~~i~~~ll~~~~~~~~~ 148 (445)
.+++++|++++.++..+
T Consensus 72 ~~~~~~Ll~~g~~~~~~ 88 (89)
T PF12796_consen 72 LEIVKLLLEHGADVNIR 88 (89)
T ss_dssp HHHHHHHHHTTT-TTSS
T ss_pred HHHHHHHHHcCCCCCCc
Confidence 99999999998876544
No 223
>PRK08727 hypothetical protein; Validated
Probab=99.56 E-value=5.2e-13 Score=121.18 Aligned_cols=186 Identities=14% Similarity=0.095 Sum_probs=112.9
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc-cCcEEEEcCccccccC
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPM 284 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~l~~~ 284 (445)
...++|+||+|||||.+++++++.+...+. ....++..++. ..+.+.++.. ..-+|+|||++.+...
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~----~~~y~~~~~~~--------~~~~~~~~~l~~~dlLiIDDi~~l~~~ 108 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGR----SSAYLPLQAAA--------GRLRDALEALEGRSLVALDGLESIAGQ 108 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCC----cEEEEeHHHhh--------hhHHHHHHHHhcCCEEEEeCcccccCC
Confidence 346999999999999999999998876432 44445544332 1223344333 3369999999988753
Q ss_pred CCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCccccccc--ccceeCCCCCHHHHHHHHHHHHhccccc
Q 013316 285 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTED 362 (445)
Q Consensus 285 ~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~~~ 362 (445)
.. ....+-.++....+....+|++++..+.. +-..+|.|++|| ...+.|++|+.+++.+|++....+.
T Consensus 109 ~~------~~~~lf~l~n~~~~~~~~vI~ts~~~p~~-l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~--- 178 (233)
T PRK08727 109 RE------DEVALFDFHNRARAAGITLLYTARQMPDG-LALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR--- 178 (233)
T ss_pred hH------HHHHHHHHHHHHHHcCCeEEEECCCChhh-hhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc---
Confidence 32 11222223322222233344444433222 222379999997 4678999999999999999876653
Q ss_pred ccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316 363 SLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 438 (445)
Q Consensus 363 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~ 438 (445)
. -.++.+++..+..+ + .+..|.+.+++++....... . ...||.+.+++.++
T Consensus 179 ------~--l~l~~e~~~~La~~-~------~rd~r~~l~~L~~l~~~~~~---~-------~~~it~~~~~~~l~ 229 (233)
T PRK08727 179 ------G--LALDEAAIDWLLTH-G------ERELAGLVALLDRLDRESLA---A-------KRRVTVPFLRRVLE 229 (233)
T ss_pred ------C--CCCCHHHHHHHHHh-C------CCCHHHHHHHHHHHHHHHHH---h-------CCCCCHHHHHHHHh
Confidence 1 24566777756544 4 34555666667765321111 0 12588888887765
No 224
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.56 E-value=6.2e-14 Score=138.26 Aligned_cols=175 Identities=15% Similarity=0.193 Sum_probs=113.4
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCC----chhHHHHHHHHccCcEEEEcCcccc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH----TGPKTRRRIKEAEGGILFVDEAYRL 281 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~----~~~~~~~~~~~a~~~il~lDEid~l 281 (445)
..+++|+||||||||++++++++++.... ....++.+++.++...+... ....+.+.+. ...+|+|||+|.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~--~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l 211 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENN--PNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFL 211 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhC--CCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhh
Confidence 45789999999999999999999986531 12367788887765544321 1122222332 2469999999998
Q ss_pred ccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCch-hHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhc
Q 013316 282 IPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE-PMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNN 358 (445)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~-~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~ 358 (445)
..+.. ...+....+-...+.++.++|.++... .+.. .++.+++||. ..+.|++|+.+++..|++..+..
T Consensus 212 ~~~~~-----~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~---l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 212 AGKER-----TQEEFFHTFNALHENGKQIVLTSDRPPKELPG---LEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred cCCHH-----HHHHHHHHHHHHHHCCCCEEEecCCCHHHHhh---hhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 76321 011222222233344555555444322 2222 3789999996 47899999999999999998876
Q ss_pred ccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316 359 QTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 410 (445)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~ 410 (445)
. ...++++.+..+. ..+ .+|.|++..++.+....
T Consensus 284 ~-----------~~~l~~e~l~~ia-~~~------~~~~r~l~~~l~~l~~~ 317 (405)
T TIGR00362 284 E-----------GLELPDEVLEFIA-KNI------RSNVRELEGALNRLLAY 317 (405)
T ss_pred c-----------CCCCCHHHHHHHH-Hhc------CCCHHHHHHHHHHHHHH
Confidence 4 2245566766444 444 67888888888877543
No 225
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.55 E-value=4.7e-14 Score=140.79 Aligned_cols=175 Identities=15% Similarity=0.192 Sum_probs=114.5
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCc----hhHHHHHHHHccCcEEEEcCcccc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT----GPKTRRRIKEAEGGILFVDEAYRL 281 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~----~~~~~~~~~~a~~~il~lDEid~l 281 (445)
..+++|+||||||||++++++++.+.... ....++.+++.++...+.... ...+.+.+. ...+|+|||+|.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~--~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l 223 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKN--PNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFL 223 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC--CCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhh
Confidence 45799999999999999999999987531 122577888887765544321 112222222 3469999999998
Q ss_pred ccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchh-HHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhc
Q 013316 282 IPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEP-MKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNN 358 (445)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~-~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~ 358 (445)
..+.. ...+++..+-...+.++.++|.++.+.. +.. .++.|++||. ..+.|++|+.+++..|++..+..
T Consensus 224 ~~~~~-----~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~---l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 224 AGKER-----TQEEFFHTFNALHEAGKQIVLTSDRPPKELPG---LEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred cCCHH-----HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHH---HHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 76321 1112222233334455555555544322 222 3788999995 57899999999999999998875
Q ss_pred ccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316 359 QTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 410 (445)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~ 410 (445)
. ...++++.+..+. ..+ .+|.|.+..++.+....
T Consensus 296 ~-----------~~~l~~e~l~~ia-~~~------~~~~R~l~~~l~~l~~~ 329 (450)
T PRK00149 296 E-----------GIDLPDEVLEFIA-KNI------TSNVRELEGALNRLIAY 329 (450)
T ss_pred c-----------CCCCCHHHHHHHH-cCc------CCCHHHHHHHHHHHHHH
Confidence 3 2245666766444 444 67888888888877543
No 226
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=9.2e-15 Score=139.30 Aligned_cols=154 Identities=24% Similarity=0.346 Sum_probs=103.1
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHH-------------
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM------------- 232 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~------------- 232 (445)
-.|.+++||+.+|+.+.-. +....++||+||||||||++|+.+...+.-
T Consensus 176 ~D~~DV~GQ~~AKrAleiA------------------AAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~ 237 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIA------------------AAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIH 237 (490)
T ss_pred cchhhhcCcHHHHHHHHHH------------------HhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHh
Confidence 3688999999999888753 235679999999999999999988875510
Q ss_pred --cC-------CCCCCCeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhh
Q 013316 233 --VG-------ILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV 303 (445)
Q Consensus 233 --~~-------~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~ 303 (445)
.+ .....||..-+.+.-...++|....--..-+..|.+|||||||+ .++...+++.|.+.
T Consensus 238 s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDEl-----------pef~~~iLe~LR~P 306 (490)
T COG0606 238 SLAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDEL-----------PEFKRSILEALREP 306 (490)
T ss_pred hhcccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeecc-----------chhhHHHHHHHhCc
Confidence 00 12233444444443333344433322234567789999999999 67777999999999
Q ss_pred ccCCcE---------------EEEEecCchhHH------------------HHHhhCcccccccccceeCCCCCHHHH
Q 013316 304 MDGGKV---------------VVIFAGYSEPMK------------------RVIASNEGFCRRVTKFFHFNDFNSEEL 348 (445)
Q Consensus 304 ~~~~~~---------------~~i~a~~~~~~~------------------~~~~~~~~l~~R~~~~i~~~~~~~~~~ 348 (445)
|+++++ .+|+|+|+-+.- ....+..+|++|+|..+.++.++..|+
T Consensus 307 LE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~ 384 (490)
T COG0606 307 LENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGEL 384 (490)
T ss_pred cccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHh
Confidence 998654 344444332221 111223668999999999999875444
No 227
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.55 E-value=9.2e-14 Score=113.14 Aligned_cols=121 Identities=39% Similarity=0.584 Sum_probs=107.0
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 013316 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (445)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh 90 (445)
..|.||||+|+..|+.+.++.++. .+.+.+..+. .|.+|+|+|+..++.+++++|+.. +.+++..+..|.||+|
T Consensus 5 ~~g~t~l~~a~~~~~~~~i~~li~-~~~~~~~~~~-~g~~~l~~a~~~~~~~~~~~ll~~----~~~~~~~~~~~~~~l~ 78 (126)
T cd00204 5 EDGRTPLHLAASNGHLEVVKLLLE-NGADVNAKDN-DGRTPLHLAAKNGHLEIVKLLLEK----GADVNARDKDGNTPLH 78 (126)
T ss_pred cCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCccCC-CCCcHHHHHHHcCCHHHHHHHHHc----CCCccccCCCCCCHHH
Confidence 468999999999999999998875 4566567775 799999999999999999999995 6678888899999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHH
Q 013316 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138 (445)
Q Consensus 91 ~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~l 138 (445)
+|+..++.+++++|+..|.+++..+..|.||+ +.+...+..+++++|
T Consensus 79 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~L 125 (126)
T cd00204 79 LAARNGNLDVVKLLLKHGADVNARDKDGRTPL-HLAAKNGHLEVVKLL 125 (126)
T ss_pred HHHHcCcHHHHHHHHHcCCCCcccCCCCCCHH-HHHHhcCCHHHHHHh
Confidence 99999999999999999999999999999999 666666778877766
No 228
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=7.5e-14 Score=137.40 Aligned_cols=210 Identities=19% Similarity=0.136 Sum_probs=138.9
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc---cCcEEEEcCccc
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYR 280 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~ 280 (445)
-.+.+++|+||+|+|||.+|+++++++..... ..+..++|+.+.+.-+-...+.+..+|.++ .++||+||+.|.
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~---~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLI---AHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDC 505 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccc---eEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhh
Confidence 35668999999999999999999999874322 257778999887654444445555667666 579999999999
Q ss_pred cccCCCC--CCchhHHHHHHHHH-hhc----cC-CcEEEEEecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHH
Q 013316 281 LIPMQKA--DDKDYGIEALEEIM-SVM----DG-GKVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAK 350 (445)
Q Consensus 281 l~~~~~~--~~~~~~~~~~~~ll-~~~----~~-~~~~~i~a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~ 350 (445)
|.+..+. ++.+...+.+..++ +.+ .. ..+.+|+++... .+.+|-|-+ +|+.++.+|.|+..+|.+
T Consensus 506 l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~-----qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~ 580 (952)
T KOG0735|consen 506 LASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQEL-----QTLNPLLVSPLLFQIVIALPAPAVTRRKE 580 (952)
T ss_pred hhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhh-----hhcChhhcCccceEEEEecCCcchhHHHH
Confidence 9873322 22223233333333 222 22 445666664332 233665555 889999999999999999
Q ss_pred HHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccH
Q 013316 351 ILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITL 430 (445)
Q Consensus 351 il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 430 (445)
|+.+.+++.. .++..+.+. +++..++|. -..++.-+++||+..+-.- . .......+|.
T Consensus 581 IL~~~~s~~~-----------~~~~~~dLd-~ls~~TEGy-----~~~DL~ifVeRai~~a~le----r-is~~~klltk 638 (952)
T KOG0735|consen 581 ILTTIFSKNL-----------SDITMDDLD-FLSVKTEGY-----LATDLVIFVERAIHEAFLE----R-ISNGPKLLTK 638 (952)
T ss_pred HHHHHHHhhh-----------hhhhhHHHH-HHHHhcCCc-----cchhHHHHHHHHHHHHHHH----H-hccCcccchH
Confidence 9999998742 122333444 344444332 3678889999997654411 1 1112238999
Q ss_pred HHHHHHHHHHHhc
Q 013316 431 EDLEAGLKLLLRL 443 (445)
Q Consensus 431 ~d~~~a~~~~~~~ 443 (445)
++|.++++.+.|.
T Consensus 639 e~f~ksL~~F~P~ 651 (952)
T KOG0735|consen 639 ELFEKSLKDFVPL 651 (952)
T ss_pred HHHHHHHHhcChH
Confidence 9999999988774
No 229
>PHA02792 ankyrin-like protein; Provisional
Probab=99.53 E-value=3.3e-14 Score=142.27 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=98.9
Q ss_pred CCccCccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCC--ChHHHHHHhCCcH---HHHHHhhcCCCCCCc
Q 013316 2 QKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMA--QTPLHVSAGYNKA---EIVKSLLEWPGNDKV 76 (445)
Q Consensus 2 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g--~tpLh~A~~~g~~---~iv~~Ll~~~~~~g~ 76 (445)
..|++.. +..+..++|.||..|+.++++.|+. +|++++..+. .| .||||+|+..... +++++|+.+ |+
T Consensus 329 d~Ga~~~-r~~~~n~~~~Aa~~gn~eIVelLIs-~GADIN~kD~-~g~~~TpLh~A~~n~~~~v~~IlklLIs~----GA 401 (631)
T PHA02792 329 DEGATLY-RFKHINKYFQKFDNRDPKVVEYILK-NGNVVVEDDD-NIINIMPLFPTLSIHESDVLSILKLCKPY----ID 401 (631)
T ss_pred HCCCccc-cCCcchHHHHHHHcCCHHHHHHHHH-cCCchhhhcC-CCCChhHHHHHHHhccHhHHHHHHHHHhc----CC
Confidence 3566654 2346778999999999999987775 6899999886 44 6999998877654 357888885 89
Q ss_pred ccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhh
Q 013316 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHL 125 (445)
Q Consensus 77 ~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~ 125 (445)
++|.+|..|.||||+|+..++.+++++|+++|++++.+|..|.||++++
T Consensus 402 DIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A 450 (631)
T PHA02792 402 DINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGIC 450 (631)
T ss_pred ccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999443
No 230
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.53 E-value=2.1e-14 Score=136.76 Aligned_cols=121 Identities=30% Similarity=0.428 Sum_probs=105.2
Q ss_pred CCCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCC-----------------------------------------
Q 013316 1 MQKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPS----------------------------------------- 38 (445)
Q Consensus 1 l~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~----------------------------------------- 38 (445)
+++|+++|..+ .+|||||.|+..|++.++++++.. |+
T Consensus 93 ~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~-gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~ 171 (527)
T KOG0505|consen 93 VENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQH-GANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARK 171 (527)
T ss_pred HHhcCCccccccccCCcchhhcccccHHHHHHHHHh-hhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhh
Confidence 36789999877 799999999999999999988763 22
Q ss_pred ------------------CcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHH
Q 013316 39 ------------------LLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA 100 (445)
Q Consensus 39 ------------------~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~ 100 (445)
..+.... .|.|.||+|+.+|..++..+|+.. |.+++.+|.+|+||||.|+..|..++
T Consensus 172 ~~e~~ml~D~~q~l~~G~~~d~~~~-rG~T~lHvAaa~Gy~e~~~lLl~a----g~~~~~~D~dgWtPlHAAA~Wg~~~~ 246 (527)
T KOG0505|consen 172 AEEQTMLDDARQWLNAGAELDARHA-RGATALHVAAANGYTEVAALLLQA----GYSVNIKDYDGWTPLHAAAHWGQEDA 246 (527)
T ss_pred hhHHHHHHHHHHHHhcccccccccc-ccchHHHHHHhhhHHHHHHHHHHh----ccCcccccccCCCcccHHHHhhhHhH
Confidence 1122223 588999999999999999999995 88999999999999999999999999
Q ss_pred HHHHHhcCCCCcccccCCCChhhhhhc
Q 013316 101 AKLLLAHGAFIEAKANEGKTPLDHLSN 127 (445)
Q Consensus 101 ~~~Ll~~ga~~~~~~~~g~tpl~~~a~ 127 (445)
+++|+.+|++++....+|.||++.+..
T Consensus 247 ~elL~~~ga~~d~~t~~g~~p~dv~de 273 (527)
T KOG0505|consen 247 CELLVEHGADMDAKTKMGETPLDVADE 273 (527)
T ss_pred HHHHHHhhcccchhhhcCCCCccchhh
Confidence 999999999999999999999966544
No 231
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.52 E-value=9.5e-14 Score=141.90 Aligned_cols=147 Identities=14% Similarity=0.224 Sum_probs=98.6
Q ss_pred HHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-----------------------cEEEEEecCchhH
Q 013316 264 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSEPM 320 (445)
Q Consensus 264 ~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------------------~~~~i~a~~~~~~ 320 (445)
.+.+|.+|+|||||++.+.+ ..+..|++.|+++ ++.+|++++.+..
T Consensus 212 ~L~~AngGtL~Ldei~~L~~-----------~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l 280 (608)
T TIGR00764 212 AIHRAHKGVLYIDEIKTMPL-----------EVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDL 280 (608)
T ss_pred ceEECCCCEEEEEChHhCCH-----------HHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHH
Confidence 56677889999999988876 6777888877542 3567888776544
Q ss_pred HHHHhhCcccccccc---cceeCCC---CCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHH---hh
Q 013316 321 KRVIASNEGFCRRVT---KFFHFND---FNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE---KQ 391 (445)
Q Consensus 321 ~~~~~~~~~l~~R~~---~~i~~~~---~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~ 391 (445)
.. .+|.|++||+ ..+.|+. .+.+.+.++++. +.+...+. ...+.++.+++..++.+++.. .-
T Consensus 281 ~~---l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~-i~~~~~r~-----G~l~~~s~~Av~~Li~~~~R~ag~r~ 351 (608)
T TIGR00764 281 EG---MHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQF-VAQEVKKD-----GRIPHFTRDAVEEIVREAQRRAGRKD 351 (608)
T ss_pred hh---cCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHH-HHHHHHHh-----CCCCcCCHHHHHHHHHHHHHHHhccc
Confidence 33 4999999998 5666654 245666666554 33332221 113478889999888665532 12
Q ss_pred hcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316 392 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 439 (445)
Q Consensus 392 ~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 439 (445)
+.+.+.|++.+++..|...+. .++...|+.+||.+|++.
T Consensus 352 ~lsl~~R~L~~llR~A~~iA~---------~~~~~~I~~ehV~~Ai~~ 390 (608)
T TIGR00764 352 HLTLRLRELGGLVRAAGDIAK---------SSGKVYVTAEHVLKAKKL 390 (608)
T ss_pred ccCCCHHHHHHHHHHHHHHHH---------hcCCceecHHHHHHHHHH
Confidence 346788999999998832211 112347999999998874
No 232
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.51 E-value=4.5e-13 Score=126.81 Aligned_cols=158 Identities=20% Similarity=0.273 Sum_probs=102.6
Q ss_pred HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC---------
Q 013316 168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT--------- 238 (445)
Q Consensus 168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~--------- 238 (445)
|..|+|++.+|..+.-.+ + .....+++|.|+||||||+++|+++..+........
T Consensus 3 f~~ivgq~~~~~al~~~~--~--------------~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~ 66 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNV--I--------------DPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSD 66 (337)
T ss_pred ccccccHHHHHHHHHHHh--c--------------CCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCC
Confidence 456999999987765321 1 223568999999999999999999988732110000
Q ss_pred ------------------------CCeEEeecccccccccCCch--hH--------HHHHHHHccCcEEEEcCccccccC
Q 013316 239 ------------------------DRVTEVQRTDLVGEFVGHTG--PK--------TRRRIKEAEGGILFVDEAYRLIPM 284 (445)
Q Consensus 239 ------------------------~~~~~~~~~~l~~~~~g~~~--~~--------~~~~~~~a~~~il~lDEid~l~~~ 284 (445)
.+|+.+........++|... .. ....+.+|.+++||||||+.+.+
T Consensus 67 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~- 145 (337)
T TIGR02030 67 PEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED- 145 (337)
T ss_pred ccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH-
Confidence 11122111111223444311 11 12356678889999999998876
Q ss_pred CCCCCchhHHHHHHHHHhhccCCc---------------EEEEEecCchhHHHHHhhCcccccccccceeCCCCCH-HHH
Q 013316 285 QKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EEL 348 (445)
Q Consensus 285 ~~~~~~~~~~~~~~~ll~~~~~~~---------------~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~-~~~ 348 (445)
..|+.|+..|+++. +++|++.++.. .. ..++|++||...+.++.|+. +++
T Consensus 146 ----------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~e-g~---l~~~LldRf~l~i~l~~p~~~eer 211 (337)
T TIGR02030 146 ----------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEE-GE---LRPQLLDRFGLHAEIRTVRDVELR 211 (337)
T ss_pred ----------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEecccccc-CC---CCHHHHhhcceEEECCCCCCHHHH
Confidence 78888998887542 34555544332 12 36889999999999999986 888
Q ss_pred HHHHHHHH
Q 013316 349 AKILHIKM 356 (445)
Q Consensus 349 ~~il~~~l 356 (445)
.+|++...
T Consensus 212 ~eIL~~~~ 219 (337)
T TIGR02030 212 VEIVERRT 219 (337)
T ss_pred HHHHHhhh
Confidence 89998744
No 233
>PRK05642 DNA replication initiation factor; Validated
Probab=99.49 E-value=1.4e-12 Score=118.30 Aligned_cols=167 Identities=11% Similarity=0.167 Sum_probs=108.9
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCC
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ 285 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~ 285 (445)
..+++|+||+|||||.+++++++++...+ ..++.++..++... ...+.+.+..+ -+|+||+++.+..+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~----~~v~y~~~~~~~~~-----~~~~~~~~~~~--d~LiiDDi~~~~~~~ 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRG----EPAVYLPLAELLDR-----GPELLDNLEQY--ELVCLDDLDVIAGKA 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCC----CcEEEeeHHHHHhh-----hHHHHHhhhhC--CEEEEechhhhcCCh
Confidence 46789999999999999999998876432 25667777666432 11222333322 589999999886532
Q ss_pred CCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhcccccc
Q 013316 286 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQTEDS 363 (445)
Q Consensus 286 ~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~~~~ 363 (445)
+ ........+-...+.++.+++.+++...... ...|.|++||. ..+.+.+|+.+++..+++......
T Consensus 114 ~-----~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~--~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~---- 182 (234)
T PRK05642 114 D-----WEEALFHLFNRLRDSGRRLLLAASKSPRELP--IKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRR---- 182 (234)
T ss_pred H-----HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcC--ccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc----
Confidence 1 1111222222233456777777765443221 23699999994 677889999999999999665442
Q ss_pred cccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316 364 LLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAR 408 (445)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~ 408 (445)
. -.++++++.++..+ + .+++|.+.+++++..
T Consensus 183 -----~--~~l~~ev~~~L~~~-~------~~d~r~l~~~l~~l~ 213 (234)
T PRK05642 183 -----G--LHLTDEVGHFILTR-G------TRSMSALFDLLERLD 213 (234)
T ss_pred -----C--CCCCHHHHHHHHHh-c------CCCHHHHHHHHHHHH
Confidence 1 24556777755543 3 677888888888774
No 234
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.48 E-value=2.5e-14 Score=129.69 Aligned_cols=116 Identities=22% Similarity=0.248 Sum_probs=97.2
Q ss_pred CCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHH-----cCCHHHHHHHHhcCCCCc
Q 013316 38 SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK-----NGCNEAAKLLLAHGAFIE 112 (445)
Q Consensus 38 ~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~-----~g~~~~~~~Ll~~ga~~~ 112 (445)
+.||..|. +|+|+||||+.++++++|+.||+. .-++|+.++.-|.||+++++. ..+..+|..|... .++|
T Consensus 259 yvVNlaDs-NGNTALHYsVSHaNF~VV~~LLDS---gvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m-gnVN 333 (452)
T KOG0514|consen 259 YVVNLADS-NGNTALHYAVSHANFDVVSILLDS---GVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM-GDVN 333 (452)
T ss_pred HHhhhhcC-CCCeeeeeeecccchHHHHHHhcc---CcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc-cCcc
Confidence 46788887 899999999999999999999986 357899999999999999984 3456778888776 4788
Q ss_pred ccc-cCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316 113 AKA-NEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA 159 (445)
Q Consensus 113 ~~~-~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a 159 (445)
++- ..|+|+| .+|...|+.++++.|+..+++.+..+..+.+..-.+
T Consensus 334 aKAsQ~gQTAL-MLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA 380 (452)
T KOG0514|consen 334 AKASQHGQTAL-MLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCA 380 (452)
T ss_pred hhhhhhcchhh-hhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhh
Confidence 875 5799999 999999999999999999999888766555554333
No 235
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.48 E-value=7e-13 Score=131.11 Aligned_cols=175 Identities=15% Similarity=0.217 Sum_probs=110.6
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCC----chhHHHHHHHHccCcEEEEcCcccc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH----TGPKTRRRIKEAEGGILFVDEAYRL 281 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~----~~~~~~~~~~~a~~~il~lDEid~l 281 (445)
..+++||||||||||.+++++++.+.... ....++.+++.++...+... ....+...+. ....+|+|||++.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~--~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~-~~~dvLlIDDi~~l 206 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE--PDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYR-KKVDVLLIDDVQFL 206 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhC--CCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHH-hcCCEEEEechhhh
Confidence 45799999999999999999999876422 12257777877765544321 1111222221 13579999999988
Q ss_pred ccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc-hhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhc
Q 013316 282 IPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS-EPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNN 358 (445)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~-~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~ 358 (445)
..+.+ ...+....+-...+.+..+++.++.. ..+.. ..+.+++||. ..+.+++|+.+++.+|++..+..
T Consensus 207 ~~~~~-----~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~---l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 207 IGKTG-----VQTELFHTFNELHDSGKQIVICSDREPQKLSE---FQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred cCcHH-----HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHH---HHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 65321 11123333333334455555544322 22223 3678999994 57799999999999999988775
Q ss_pred ccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 359 QTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
.. ..++++.+. .++... .+|.|++..++.+...
T Consensus 279 ~~-----------~~l~~ev~~-~Ia~~~------~~~~R~L~g~l~~l~~ 311 (440)
T PRK14088 279 EH-----------GELPEEVLN-FVAENV------DDNLRRLRGAIIKLLV 311 (440)
T ss_pred cC-----------CCCCHHHHH-HHHhcc------ccCHHHHHHHHHHHHH
Confidence 31 235556655 444444 6788888888887744
No 236
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5.6e-13 Score=132.55 Aligned_cols=142 Identities=22% Similarity=0.246 Sum_probs=111.3
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLI 282 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~ 282 (445)
...+|++|+||||||++++++|.+++. ++++++|.++.++-.++++.++...|..| .++||||-.+|.+.
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~-------h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~ 503 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGL-------HLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLG 503 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCC-------ceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceee
Confidence 447999999999999999999999998 99999999999999999999999999877 46999999999998
Q ss_pred cCCCCCCchhHHHHHHHHHh---hc-cCCcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhc
Q 013316 283 PMQKADDKDYGIEALEEIMS---VM-DGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNN 358 (445)
Q Consensus 283 ~~~~~~~~~~~~~~~~~ll~---~~-~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 358 (445)
-.+.++..--...+++.++. .- ....+++|+++++..- ..+.+++-|-..|.+|.|+.+||.+|++-++..
T Consensus 504 id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~-----lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~ 578 (953)
T KOG0736|consen 504 IDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIED-----LPADIQSLFLHEIEVPALSEEQRLEILQWYLNH 578 (953)
T ss_pred ecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecccccc-----CCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhc
Confidence 54443222222244444444 11 1256788887655332 257778888899999999999999999999887
Q ss_pred c
Q 013316 359 Q 359 (445)
Q Consensus 359 ~ 359 (445)
.
T Consensus 579 ~ 579 (953)
T KOG0736|consen 579 L 579 (953)
T ss_pred c
Confidence 5
No 237
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.47 E-value=1.5e-12 Score=130.34 Aligned_cols=174 Identities=19% Similarity=0.259 Sum_probs=112.4
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCc----hhHHHHHHHHccCcEEEEcCccccc
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT----GPKTRRRIKEAEGGILFVDEAYRLI 282 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~----~~~~~~~~~~a~~~il~lDEid~l~ 282 (445)
..++|||++|||||.|+.+|++.+.... ....++.+++.++...+.... ...+.+.+. ...+|+||||+.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~--~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~--~~DLLlIDDIq~l~ 390 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLY--PGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR--EMDILLVDDIQFLE 390 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhC--CCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh--cCCEEEEehhcccc
Confidence 4599999999999999999999886421 122677888877766554321 112222222 34799999999997
Q ss_pred cCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhccc
Q 013316 283 PMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQT 360 (445)
Q Consensus 283 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~ 360 (445)
.+.. ...++++.+-...+.++-+||.+... +.. +...++.|++||. ..+.+..|+.+.+.+||+..+.+.
T Consensus 391 gke~-----tqeeLF~l~N~l~e~gk~IIITSd~~-P~e-L~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r- 462 (617)
T PRK14086 391 DKES-----TQEEFFHTFNTLHNANKQIVLSSDRP-PKQ-LVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQE- 462 (617)
T ss_pred CCHH-----HHHHHHHHHHHHHhcCCCEEEecCCC-hHh-hhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhc-
Confidence 6331 11122322223334455455544332 221 2224789999995 667999999999999999987764
Q ss_pred ccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 361 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
...++.+.+..+..+. ..|.|+|..++.+...
T Consensus 463 ----------~l~l~~eVi~yLa~r~-------~rnvR~LegaL~rL~a 494 (617)
T PRK14086 463 ----------QLNAPPEVLEFIASRI-------SRNIRELEGALIRVTA 494 (617)
T ss_pred ----------CCCCCHHHHHHHHHhc-------cCCHHHHHHHHHHHHH
Confidence 1245666777555443 5688889888887754
No 238
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.47 E-value=1.3e-13 Score=146.62 Aligned_cols=127 Identities=20% Similarity=0.204 Sum_probs=107.3
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCC-------------CCCChHHHHHHhCCcHHHHHHhhcCCCCCCcc
Q 013316 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNP-------------VMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE 77 (445)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-------------~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~ 77 (445)
..|.||||+||..|+.++++.|+. .|++++.++. ..|.||||+|+..|+.+++++|+++ |+|
T Consensus 126 ~~G~TpLhlAa~~~~~eiVklLL~-~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~----gad 200 (743)
T TIGR00870 126 TPGITALHLAAHRQNYEIVKLLLE-RGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSED----PAD 200 (743)
T ss_pred CCCCcHHHHHHHhCCHHHHHHHHh-CCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcC----Ccc
Confidence 369999999999999999998875 6888886531 2489999999999999999999995 889
Q ss_pred cccccCCCCcHHHHHHHcC---------CHHHHHHHHhcCCCC-------cccccCCCChhhhhhcCCCChHHHHHHHhh
Q 013316 78 LEAQNMYGETPLHMAAKNG---------CNEAAKLLLAHGAFI-------EAKANEGKTPLDHLSNGPGSAKLRELLLWH 141 (445)
Q Consensus 78 v~~~d~~g~tpLh~A~~~g---------~~~~~~~Ll~~ga~~-------~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~ 141 (445)
++.+|..|+||||+|+..+ ...+.++++..++.. +..|.+|.||| +.|+..++.+++++++..
T Consensus 201 in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL-~~A~~~g~~~l~~lLL~~ 279 (743)
T TIGR00870 201 ILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPL-KLAAKEGRIVLFRLKLAI 279 (743)
T ss_pred hhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCch-hhhhhcCCccHHHHHHHH
Confidence 9999999999999999987 234666777766654 66799999999 788889999999999985
Q ss_pred hh
Q 013316 142 SE 143 (445)
Q Consensus 142 ~~ 143 (445)
..
T Consensus 280 ~~ 281 (743)
T TIGR00870 280 KY 281 (743)
T ss_pred HH
Confidence 43
No 239
>PRK06620 hypothetical protein; Validated
Probab=99.47 E-value=5e-13 Score=119.21 Aligned_cols=167 Identities=13% Similarity=0.096 Sum_probs=106.3
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCC
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQK 286 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~ 286 (445)
..++||||||||||++++++++.... .++. .... ..+.+ ....+|+|||||.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~-----------~~~~~--~~~d~lliDdi~~~~~--- 99 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFF-----------NEEIL--EKYNAFIIEDIENWQE--- 99 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhh-----------chhHH--hcCCEEEEeccccchH---
Confidence 67999999999999999998876432 2211 1000 01111 1346999999985411
Q ss_pred CCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhccccccc
Q 013316 287 ADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQTEDSL 364 (445)
Q Consensus 287 ~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~~~~~ 364 (445)
......+-...+.++.++|++++.++.. .. |.|++|+. .++.+.+|+.+++..+++..+...
T Consensus 100 -------~~lf~l~N~~~e~g~~ilits~~~p~~l---~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~----- 163 (214)
T PRK06620 100 -------PALLHIFNIINEKQKYLLLTSSDKSRNF---TL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS----- 163 (214)
T ss_pred -------HHHHHHHHHHHhcCCEEEEEcCCCcccc---ch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-----
Confidence 1223223333466777777777666532 34 88999994 378999999999999998877652
Q ss_pred ccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHH
Q 013316 365 LYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 437 (445)
Q Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~ 437 (445)
. -.++++++..++.+ + .++.|.+.+++++..+. ... ....||.+.+++++
T Consensus 164 ----~--l~l~~ev~~~L~~~-~------~~d~r~l~~~l~~l~~~-~~~---------~~~~it~~~~~~~l 213 (214)
T PRK06620 164 ----S--VTISRQIIDFLLVN-L------PREYSKIIEILENINYF-ALI---------SKRKITISLVKEVL 213 (214)
T ss_pred ----C--CCCCHHHHHHHHHH-c------cCCHHHHHHHHHHHHHH-HHH---------cCCCCCHHHHHHHh
Confidence 1 24566677755544 3 67788888888875321 110 11247777777664
No 240
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.47 E-value=9.3e-14 Score=119.15 Aligned_cols=111 Identities=17% Similarity=0.342 Sum_probs=77.5
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHH-HcCCCCCCCeEEeecccccccccCCchhHHHHHH-------HHccCcEEEEc
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLY-MVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRI-------KEAEGGILFVD 276 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~-~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~-------~~a~~~il~lD 276 (445)
+..+++|+||+|||||.+|+++++.+. . ...+++.++++.+....- ....+.+.+ ...+++|||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~----~~~~~~~~d~s~~~~~~~--~~~~~~~l~~~~~~~v~~~~~gVVllD 75 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVG----SERPLIRIDMSEYSEGDD--VESSVSKLLGSPPGYVGAEEGGVVLLD 75 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-S----SCCEEEEEEGGGHCSHHH--CSCHCHHHHHHTTCHHHHHHHTEEEEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccC----CccchHHHhhhcccccch--HHhhhhhhhhcccceeeccchhhhhhH
Confidence 345799999999999999999999998 3 234899999998765100 111112222 23345899999
Q ss_pred CccccccCCCCCCchhHHHHHHHHHhhccCC-------------cEEEEEecCchhHH
Q 013316 277 EAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------------KVVVIFAGYSEPMK 321 (445)
Q Consensus 277 Eid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------------~~~~i~a~~~~~~~ 321 (445)
|||+++++.+.........+++.||+.++++ ++++|++++-....
T Consensus 76 EidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~ 133 (171)
T PF07724_consen 76 EIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEE 133 (171)
T ss_dssp TGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHH
T ss_pred HHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccch
Confidence 9999999743333445568899999999753 45788877654433
No 241
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.47 E-value=2.3e-12 Score=127.53 Aligned_cols=178 Identities=11% Similarity=0.120 Sum_probs=112.4
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCch---hHHHHHHHHc-cCcEEEEcCcccc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG---PKTRRRIKEA-EGGILFVDEAYRL 281 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~---~~~~~~~~~a-~~~il~lDEid~l 281 (445)
..+++|||++|||||.+++++++.+.... ....++.+++.++...+...-. ..+.+..+.. ..-+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~--~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNF--SDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhC--CCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccc
Confidence 45799999999999999999999876421 1226677888777655432211 1222222222 3369999999988
Q ss_pred ccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhcc
Q 013316 282 IPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQ 359 (445)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~ 359 (445)
..+.. ........+-...+.++.+++.+...... +...++.|++||. ..+.+.+|+.+++.+|+++.++..
T Consensus 219 ~~k~~-----~~e~lf~l~N~~~~~~k~iIltsd~~P~~--l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~ 291 (450)
T PRK14087 219 SYKEK-----TNEIFFTIFNNFIENDKQLFFSSDKSPEL--LNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQ 291 (450)
T ss_pred cCCHH-----HHHHHHHHHHHHHHcCCcEEEECCCCHHH--HhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhc
Confidence 75321 11122222222334455444444333222 2234789999994 677999999999999999988763
Q ss_pred cccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316 360 TEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAR 408 (445)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~ 408 (445)
. +...++++++..+ ...+ .+|.|.+.+++.++.
T Consensus 292 g---------l~~~l~~evl~~I-a~~~------~gd~R~L~gaL~~l~ 324 (450)
T PRK14087 292 N---------IKQEVTEEAINFI-SNYY------SDDVRKIKGSVSRLN 324 (450)
T ss_pred C---------CCCCCCHHHHHHH-HHcc------CCCHHHHHHHHHHHH
Confidence 1 1124677777644 4554 678888888888774
No 242
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.46 E-value=5.2e-14 Score=117.19 Aligned_cols=132 Identities=23% Similarity=0.345 Sum_probs=89.7
Q ss_pred hcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccc
Q 013316 172 VGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG 251 (445)
Q Consensus 172 ~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~ 251 (445)
+|.++.++++++.+..+ +....+|+|+|++||||+++|++||..... ...+|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~--------------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~----~~~~~~~~~~~~~~- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERL--------------AKSSSPVLITGEPGTGKSLLARALHRYSGR----ANGPFIVIDCASLP- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHH--------------HCSSS-EEEECCTTSSHHHHHHCCHHTTTT----CCS-CCCCCHHCTC-
T ss_pred CCCCHHHHHHHHHHHHH--------------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCc----cCCCeEEechhhCc-
Confidence 57888888888877655 456789999999999999999999997654 33477777776642
Q ss_pred cccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc---CCcEEEEEecCchhHHHH--Hhh
Q 013316 252 EFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD---GGKVVVIFAGYSEPMKRV--IAS 326 (445)
Q Consensus 252 ~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~i~a~~~~~~~~~--~~~ 326 (445)
.+.++.+.+++|||+|||.+.+ +.|..|+..++ ..++.+|++++.+....+ -..
T Consensus 62 ----------~~~l~~a~~gtL~l~~i~~L~~-----------~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~ 120 (138)
T PF14532_consen 62 ----------AELLEQAKGGTLYLKNIDRLSP-----------EAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRF 120 (138)
T ss_dssp ----------HHHHHHCTTSEEEEECGCCS-H-----------HHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTH
T ss_pred ----------HHHHHHcCCCEEEECChHHCCH-----------HHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccch
Confidence 4577889999999999999987 66666666665 345667766654433211 122
Q ss_pred Ccccccccc-cceeCCCC
Q 013316 327 NEGFCRRVT-KFFHFNDF 343 (445)
Q Consensus 327 ~~~l~~R~~-~~i~~~~~ 343 (445)
++.|..||. ..|.+|++
T Consensus 121 ~~~L~~~l~~~~i~lPpL 138 (138)
T PF14532_consen 121 SPDLYYRLSQLEIHLPPL 138 (138)
T ss_dssp HHHHHHHCSTCEEEE---
T ss_pred hHHHHHHhCCCEEeCCCC
Confidence 466777875 66677763
No 243
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.46 E-value=6.2e-13 Score=137.52 Aligned_cols=142 Identities=15% Similarity=0.161 Sum_probs=93.4
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCC-chhH--HHHHHHHccCcEEEEcCccc
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH-TGPK--TRRRIKEAEGGILFVDEAYR 280 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~--~~~~~~~a~~~il~lDEid~ 280 (445)
....||||.|+||||||.+|+++|+...+.......++..+.++.... +.+. ++.. -...+..|.+|+++|||++.
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLvlAdgGtL~IDEidk 568 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVVLANGGVCCIDELDK 568 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEEEcCCCeEEecchhh
Confidence 345699999999999999999999977543323334566655554422 1110 1111 12256678899999999998
Q ss_pred cccCCCCCCchhHHHHHHHHHhhccCC---------------cEEEEEecCchhHH--------HHHhhCcccccccccc
Q 013316 281 LIPMQKADDKDYGIEALEEIMSVMDGG---------------KVVVIFAGYSEPMK--------RVIASNEGFCRRVTKF 337 (445)
Q Consensus 281 l~~~~~~~~~~~~~~~~~~ll~~~~~~---------------~~~~i~a~~~~~~~--------~~~~~~~~l~~R~~~~ 337 (445)
+.+ ..+..|+++|+.+ +..||+|+++..-. .-+...|+|++|||..
T Consensus 569 ms~-----------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLI 637 (915)
T PTZ00111 569 CHN-----------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLI 637 (915)
T ss_pred CCH-----------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEE
Confidence 876 6677888888653 35677777664211 1223358899999966
Q ss_pred e-eCCCCCHHHHHHHHHHHHh
Q 013316 338 F-HFNDFNSEELAKILHIKMN 357 (445)
Q Consensus 338 i-~~~~~~~~~~~~il~~~l~ 357 (445)
+ .++.|+.+.=..|.++.++
T Consensus 638 f~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 638 YLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred EEecCCCChHHHHHHHHHHHH
Confidence 4 7777776665666666553
No 244
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.45 E-value=7e-14 Score=137.87 Aligned_cols=123 Identities=32% Similarity=0.321 Sum_probs=111.5
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~ 91 (445)
.|.|.||+||.+|+..+++.|+. +..-++..+. .|.+|||+|++.|+.+++++++.. +..+|..+..|.||||.
T Consensus 48 ~gfTalhha~Lng~~~is~llle-~ea~ldl~d~-kg~~plhlaaw~g~~e~vkmll~q----~d~~na~~~e~~tplhl 121 (854)
T KOG0507|consen 48 SGFTLLHHAVLNGQNQISKLLLD-YEALLDLCDT-KGILPLHLAAWNGNLEIVKMLLLQ----TDILNAVNIENETPLHL 121 (854)
T ss_pred cchhHHHHHHhcCchHHHHHHhc-chhhhhhhhc-cCcceEEehhhcCcchHHHHHHhc----ccCCCcccccCcCccch
Confidence 69999999999999999986665 4555666665 699999999999999999999985 56789999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhh
Q 013316 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141 (445)
Q Consensus 92 A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~ 141 (445)
|+.+|+.+++.+|+.+|+++-.+|+.+.|++ -+|+..+..++++.|++.
T Consensus 122 aaqhgh~dvv~~Ll~~~adp~i~nns~~t~l-dlA~qfgr~~Vvq~ll~~ 170 (854)
T KOG0507|consen 122 AAQHGHLEVVFYLLKKNADPFIRNNSKETVL-DLASRFGRAEVVQMLLQK 170 (854)
T ss_pred hhhhcchHHHHHHHhcCCCccccCcccccHH-HHHHHhhhhHHHHHHhhh
Confidence 9999999999999999999999999999999 788999999999998876
No 245
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.45 E-value=7e-13 Score=133.80 Aligned_cols=242 Identities=14% Similarity=0.158 Sum_probs=140.5
Q ss_pred hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE---eec
Q 013316 170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE---VQR 246 (445)
Q Consensus 170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~---~~~ 246 (445)
.|.|++.+|..+.-.+-.-. .+............||||+|+||||||++||++|+.+.+. .|+. .++
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~----~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~------~~~~~~~~~~ 273 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGV----HKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA------VYTTGKGSSA 273 (509)
T ss_pred cccCcHHHHHHHHHHHhCCC----ccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc------eEcCCCCCCc
Confidence 48899988766553221000 0000000112234589999999999999999999987541 1221 122
Q ss_pred cccccc-----ccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC--------------
Q 013316 247 TDLVGE-----FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------------- 307 (445)
Q Consensus 247 ~~l~~~-----~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------------- 307 (445)
..+... ..|+. ..-...+..|.+|+++|||++.+.+ ..+..|+..|+.+
T Consensus 274 ~~l~~~~~~~~~~g~~-~~~~G~l~~A~~Gil~iDEi~~l~~-----------~~q~~L~e~me~~~i~i~k~G~~~~l~ 341 (509)
T smart00350 274 VGLTAAVTRDPETREF-TLEGGALVLADNGVCCIDEFDKMDD-----------SDRTAIHEAMEQQTISIAKAGITTTLN 341 (509)
T ss_pred CCccccceEccCcceE-EecCccEEecCCCEEEEechhhCCH-----------HHHHHHHHHHhcCEEEEEeCCEEEEec
Confidence 222111 11110 0001234567899999999988876 6677888888653
Q ss_pred -cEEEEEecCchhH--------HHHHhhCcccccccccc-eeCCCCCHHHHHHHHHHHHhccccc----cccc-------
Q 013316 308 -KVVVIFAGYSEPM--------KRVIASNEGFCRRVTKF-FHFNDFNSEELAKILHIKMNNQTED----SLLY------- 366 (445)
Q Consensus 308 -~~~~i~a~~~~~~--------~~~~~~~~~l~~R~~~~-i~~~~~~~~~~~~il~~~l~~~~~~----~~~~------- 366 (445)
+..+|+++++..- ..-+...|++++|||.. +....|+.+...+|+++.++..... ....
T Consensus 342 ~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
T smart00350 342 ARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQE 421 (509)
T ss_pred CCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHH
Confidence 3466777665421 01124579999999965 4668888888899998876532211 0000
Q ss_pred --------ccc-cCCcccHHHHHHHHHHHHHHhh---------hcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhc
Q 013316 367 --------GFK-LHSSCSMDAIAALIEKETTEKQ---------RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTI 428 (445)
Q Consensus 367 --------~~~-~~~~~~~~~l~~~~~~~~~~~~---------~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 428 (445)
.-. +.|.+++++...+...+..-.. ..+...|.+..++.-+...+..+. ...|
T Consensus 422 ~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~---------r~~V 492 (509)
T smart00350 422 FLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRL---------SDVV 492 (509)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcC---------CCcc
Confidence 001 3456677776655544442111 113456777777777644443332 2379
Q ss_pred cHHHHHHHHHHHHh
Q 013316 429 TLEDLEAGLKLLLR 442 (445)
Q Consensus 429 ~~~d~~~a~~~~~~ 442 (445)
+.+|+..|+.-+..
T Consensus 493 ~~~Dv~~ai~l~~~ 506 (509)
T smart00350 493 EEADVEEAIRLLRE 506 (509)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987653
No 246
>PRK09087 hypothetical protein; Validated
Probab=99.44 E-value=3e-12 Score=115.24 Aligned_cols=178 Identities=13% Similarity=0.094 Sum_probs=112.8
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCC
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ 285 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~ 285 (445)
.+.++|+||+|+|||+++++++..... ..++...+. ...+......+|+|||++.+...+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~---------~~i~~~~~~-----------~~~~~~~~~~~l~iDDi~~~~~~~ 103 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDA---------LLIHPNEIG-----------SDAANAAAEGPVLIEDIDAGGFDE 103 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCC---------EEecHHHcc-----------hHHHHhhhcCeEEEECCCCCCCCH
Confidence 345999999999999999998875422 233332221 112223334689999999874211
Q ss_pred CCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhcccccc
Q 013316 286 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQTEDS 363 (445)
Q Consensus 286 ~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~~~~ 363 (445)
.+....+-...+.++.++|.+++....-.. ..|.|++||. ..+.+.+|+.+++.++++..++..
T Consensus 104 --------~~lf~l~n~~~~~g~~ilits~~~p~~~~~--~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~---- 169 (226)
T PRK09087 104 --------TGLFHLINSVRQAGTSLLMTSRLWPSSWNV--KLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADR---- 169 (226)
T ss_pred --------HHHHHHHHHHHhCCCeEEEECCCChHHhcc--ccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHc----
Confidence 133333334445577777777665543321 2688999995 788999999999999999988763
Q ss_pred cccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316 364 LLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 441 (445)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 441 (445)
.-.++++++..++.+ + .++.+.+..++.+..+. ... ....||...++++++.+.
T Consensus 170 -------~~~l~~ev~~~La~~-~------~r~~~~l~~~l~~L~~~---~~~-------~~~~it~~~~~~~l~~~~ 223 (226)
T PRK09087 170 -------QLYVDPHVVYYLVSR-M------ERSLFAAQTIVDRLDRL---ALE-------RKSRITRALAAEVLNEMG 223 (226)
T ss_pred -------CCCCCHHHHHHHHHH-h------hhhHHHHHHHHHHHHHH---HHH-------hCCCCCHHHHHHHHHhhc
Confidence 124566777755544 4 34555666666555221 110 113588888888887654
No 247
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.42 E-value=6.9e-13 Score=128.88 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=95.4
Q ss_pred hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc-cc
Q 013316 171 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT-DL 249 (445)
Q Consensus 171 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~-~l 249 (445)
++|++++.+.+... .....++||+||||||||++|+++|+.+...+ +|..+.+. ..
T Consensus 22 i~gre~vI~lll~a------------------alag~hVLL~GpPGTGKT~LAraLa~~~~~~~-----~F~~~~~~ftt 78 (498)
T PRK13531 22 LYERSHAIRLCLLA------------------ALSGESVFLLGPPGIAKSLIARRLKFAFQNAR-----AFEYLMTRFST 78 (498)
T ss_pred ccCcHHHHHHHHHH------------------HccCCCEEEECCCChhHHHHHHHHHHHhcccC-----cceeeeeeecC
Confidence 89999888777653 23467999999999999999999999876422 33333332 11
Q ss_pred cccccCCc-hhHH--HHHHHHc------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc------------
Q 013316 250 VGEFVGHT-GPKT--RRRIKEA------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK------------ 308 (445)
Q Consensus 250 ~~~~~g~~-~~~~--~~~~~~a------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~------------ 308 (445)
...++|.. -... ...|... ...+||+|||..+.+ ..++.|+..|+++.
T Consensus 79 p~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp-----------~~QsaLLeam~Er~~t~g~~~~~lp~ 147 (498)
T PRK13531 79 PEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGP-----------AILNTLLTAINERRFRNGAHEEKIPM 147 (498)
T ss_pred cHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccccCCH-----------HHHHHHHHHHHhCeEecCCeEEeCCC
Confidence 23445532 1110 1122211 113899999977766 88999999996532
Q ss_pred EEEEEecCchhHHHHHhhCcccccccccceeCCCCC-HHHHHHHHHHH
Q 013316 309 VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEELAKILHIK 355 (445)
Q Consensus 309 ~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~~~~~il~~~ 355 (445)
.++++||++-+- --...+++..||-..+.+|+|+ .++-.+|+...
T Consensus 148 rfiv~ATN~LPE--~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 148 RLLVTASNELPE--ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred cEEEEECCCCcc--cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 255555542221 0011357899998889999997 46657777653
No 248
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.42 E-value=2.1e-12 Score=116.85 Aligned_cols=125 Identities=31% Similarity=0.360 Sum_probs=112.7
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCc-----HHHHHHhhcCCCCCCc---cccccc
Q 013316 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK-----AEIVKSLLEWPGNDKV---ELEAQN 82 (445)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~-----~~iv~~Ll~~~~~~g~---~v~~~d 82 (445)
..+.+++|.++..++...+..++ ..+.+++..+. .|.||||+|+..++ .+++++|++. |+ +.+.+|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~~~~~~ll~~----g~~~~~~~~~~ 144 (235)
T COG0666 71 LDGRLPLHSAASKGDDKIVKLLL-ASGADVNAKDA-DGDTPLHLAALNGNPPEGNIEVAKLLLEA----GADLDVNNLRD 144 (235)
T ss_pred ccccCHHHHHHHcCcHHHHHHHH-HcCCCcccccC-CCCcHHHHHHhcCCcccchHHHHHHHHHc----CCCCCCccccC
Confidence 34789999999999999987666 46788888886 79999999999999 9999999995 66 556779
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhh
Q 013316 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS 142 (445)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~ 142 (445)
..|.||||+|+..|+.+++.+|++.|++++.++..|.|++ +.++..+..+++..+...+
T Consensus 145 ~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 145 EDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTAL-DPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred CCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcch-hhhcccchHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999 8899999999999887665
No 249
>PHA02792 ankyrin-like protein; Provisional
Probab=99.42 E-value=5.5e-13 Score=133.60 Aligned_cols=133 Identities=11% Similarity=0.014 Sum_probs=105.3
Q ss_pred CccCCC-CCchHhHHHH-HcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHh-CCcHHHHHHhhcCCCCC--------
Q 013316 6 DRRSRS-AKPATIHGCA-QSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAG-YNKAEIVKSLLEWPGND-------- 74 (445)
Q Consensus 6 ~~~~~~-~~~t~L~~A~-~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~-~g~~~iv~~Ll~~~~~~-------- 74 (445)
.++..+ .|.+++|+-| ..|++++++.|+. +|+++|..++ .|.+|+|+|+. .++++++++|++.+.+.
T Consensus 63 ~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~-~GAdvN~~~n-~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~ 140 (631)
T PHA02792 63 SVDYKNINDFDIFEYLCSDNIDIELLKLLIS-KGLEINSIKN-GINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGY 140 (631)
T ss_pred CCCcCccCCccHHHHHHHhcccHHHHHHHHH-cCCCcccccC-CCCcceeEeecCCCChHHHHHHHHCCCCcccccccCc
Confidence 344444 5677777544 4689999987775 6999999997 68999999965 69999999999975320
Q ss_pred ------------------------CcccccccCCCCcHHHHHHHcC-------CHHHHHHHHhcCCCCcccccCCCChhh
Q 013316 75 ------------------------KVELEAQNMYGETPLHMAAKNG-------CNEAAKLLLAHGAFIEAKANEGKTPLD 123 (445)
Q Consensus 75 ------------------------g~~v~~~d~~g~tpLh~A~~~g-------~~~~~~~Ll~~ga~~~~~~~~g~tpl~ 123 (445)
+..+|..|..|.||||+|+..+ +.+++++|+++|++++.+|..|.||||
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~ 220 (631)
T PHA02792 141 KIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLY 220 (631)
T ss_pred chhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHH
Confidence 0123456677999999999999 899999999999999999999999995
Q ss_pred hhhcCCC--ChHHHHHHHhh
Q 013316 124 HLSNGPG--SAKLRELLLWH 141 (445)
Q Consensus 124 ~~a~~~~--~~~i~~~ll~~ 141 (445)
+ +.... ..+++++|...
T Consensus 221 ~-~~~~~~i~~ei~~~L~~~ 239 (631)
T PHA02792 221 Y-YVDKCDIKREIFDALFDS 239 (631)
T ss_pred H-HHHcccchHHHHHHHHhc
Confidence 4 55555 67899988764
No 250
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.42 E-value=1.1e-12 Score=139.70 Aligned_cols=149 Identities=22% Similarity=0.196 Sum_probs=96.4
Q ss_pred ccCccCCC-CCchHhH-HHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCc---HHHHHHhhcCCCCCCc--
Q 013316 4 NQDRRSRS-AKPATIH-GCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK---AEIVKSLLEWPGNDKV-- 76 (445)
Q Consensus 4 ~~~~~~~~-~~~t~L~-~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~---~~iv~~Ll~~~~~~g~-- 76 (445)
+.++|..+ .|.|||| .|+..++.++++.|+ ..+. .+. .|.||||+|+.+++ ..++..+.......+.
T Consensus 42 ~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl-~~g~----~~~-~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~ 115 (743)
T TIGR00870 42 KLNINCPDRLGRSALFVAAIENENLELTELLL-NLSC----RGA-VGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLE 115 (743)
T ss_pred ccCCCCcCccchhHHHHHHHhcChHHHHHHHH-hCCC----CCC-cChHHHHHHHhccHHHHHHHHHHHhhcccccCchh
Confidence 44455333 5777777 555555555555444 3333 232 46777777665221 2223333332110000
Q ss_pred cc----ccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccc--------------cCCCChhhhhhcCCCChHHHHHH
Q 013316 77 EL----EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA--------------NEGKTPLDHLSNGPGSAKLRELL 138 (445)
Q Consensus 77 ~v----~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~--------------~~g~tpl~~~a~~~~~~~i~~~l 138 (445)
.+ ...+..|.||||+|+..|+.+++++|+++||+++.++ .+|.||| +.|+..++.+++++|
T Consensus 116 ~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL-~~Aa~~~~~~iv~lL 194 (743)
T TIGR00870 116 LANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPL-NAAACLGSPSIVALL 194 (743)
T ss_pred hhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHH-HHHHHhCCHHHHHHH
Confidence 01 1123469999999999999999999999999998753 3689999 777888899999999
Q ss_pred HhhhhhHHhhhhhhhhhhhHH
Q 013316 139 LWHSEEQRKRRALEACSETKA 159 (445)
Q Consensus 139 l~~~~~~~~~~~~~~~~~~~a 159 (445)
++++++.+.++..+.++...+
T Consensus 195 l~~gadin~~d~~g~T~Lh~A 215 (743)
T TIGR00870 195 SEDPADILTADSLGNTLLHLL 215 (743)
T ss_pred hcCCcchhhHhhhhhHHHHHH
Confidence 999998888777666665543
No 251
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.42 E-value=3.2e-13 Score=134.87 Aligned_cols=142 Identities=27% Similarity=0.311 Sum_probs=93.2
Q ss_pred CCchHhHHHHH---cCCHHHHHHHHhhCCCCcCC---CCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc----
Q 013316 12 AKPATIHGCAQ---SGDLLAFQRLLRENPSLLNE---RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ---- 81 (445)
Q Consensus 12 ~~~t~L~~A~~---~g~~~~v~~ll~~~~~~~~~---~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~---- 81 (445)
.|.|.||.|.. .++.+++..||.-.+.-+|. .+.|.|.||||+|..+.+.++|++|++. |+||+.+
T Consensus 142 ~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~----gADV~aRa~G~ 217 (782)
T KOG3676|consen 142 TGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAA----GADVHARACGA 217 (782)
T ss_pred hhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHc----CCchhhHhhcc
Confidence 57777777765 34556677666655543333 2345677777777777777777777773 6666532
Q ss_pred -------------------cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhh
Q 013316 82 -------------------NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS 142 (445)
Q Consensus 82 -------------------d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~ 142 (445)
-.+|+.||-+||-.++.+++++|+++|||++++|.+|+|.| |+.......++-.++++++
T Consensus 218 FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVL-H~lVi~~~~~My~~~L~~g 296 (782)
T KOG3676|consen 218 FFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVL-HMLVIHFVTEMYDLALELG 296 (782)
T ss_pred ccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHH-HHHHHHHHHHHHHHHHhcC
Confidence 12466777777777777777777777777777777777777 5555556667777777777
Q ss_pred hh--HHhhhhhhhhhhhH
Q 013316 143 EE--QRKRRALEACSETK 158 (445)
Q Consensus 143 ~~--~~~~~~~~~~~~~~ 158 (445)
++ ...+|.-+.+|...
T Consensus 297 a~~l~~v~N~qgLTPLtL 314 (782)
T KOG3676|consen 297 ANALEHVRNNQGLTPLTL 314 (782)
T ss_pred CCccccccccCCCChHHH
Confidence 76 44455555555443
No 252
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.42 E-value=1.7e-11 Score=108.47 Aligned_cols=161 Identities=19% Similarity=0.281 Sum_probs=109.9
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.+++|+|.+..++.|.+-.... +...+..++|++|++|||||++++++...+...+. .++++..
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~F------------l~G~pannvLL~G~rGtGKSSlVkall~~y~~~GL----RlIev~k 88 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQF------------LQGLPANNVLLWGARGTGKSSLVKALLNEYADQGL----RLIEVSK 88 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHH------------HcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCc----eEEEECH
Confidence 4677999999998887644333 22457789999999999999999999999987665 8899888
Q ss_pred ccccccccCCchhHHHHHHHHc-cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC------CcEEEEEecCchh
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGYSEP 319 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~~~~i~a~~~~~ 319 (445)
.++.. -..+-+.++.. ..=|||+|+. +.... + .....|...||+ .++++.+++|...
T Consensus 89 ~~L~~------l~~l~~~l~~~~~kFIlf~DDL---sFe~~----d---~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 89 EDLGD------LPELLDLLRDRPYKFILFCDDL---SFEEG----D---TEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred HHhcc------HHHHHHHHhcCCCCEEEEecCC---CCCCC----c---HHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 77632 12233334322 3469999985 22111 1 334567777775 3455555444332
Q ss_pred HH-HHHhh---------C--------cccccccccceeCCCCCHHHHHHHHHHHHhcc
Q 013316 320 MK-RVIAS---------N--------EGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 359 (445)
Q Consensus 320 ~~-~~~~~---------~--------~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~ 359 (445)
.. ..... + -+|.+||...|.|.+|+.++-.+|+++++.+.
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~ 210 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERY 210 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHc
Confidence 21 11100 1 34777999999999999999999999999764
No 253
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=4.3e-12 Score=131.15 Aligned_cols=178 Identities=19% Similarity=0.339 Sum_probs=130.1
Q ss_pred HHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeE
Q 013316 164 LENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 242 (445)
Q Consensus 164 ~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~ 242 (445)
+.+.|.+ ++||+++...|.+.+..- ..+.... .+...++|.||.|||||-+|+++|..+.. ....|+
T Consensus 556 L~~~L~~~V~gQ~eAv~aIa~AI~~s-------r~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fg----se~~~I 623 (898)
T KOG1051|consen 556 LEERLHERVIGQDEAVAAIAAAIRRS-------RAGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFG----SEENFI 623 (898)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHhh-------hcccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcC----CccceE
Confidence 4445544 999999998888865432 3333322 46778999999999999999999999865 334789
Q ss_pred Eeeccc------cccc---ccCCch-hHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc----
Q 013316 243 EVQRTD------LVGE---FVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---- 308 (445)
Q Consensus 243 ~~~~~~------l~~~---~~g~~~-~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---- 308 (445)
.++.+. +.+. |+|+++ ..+...++..+++||+|||||..++ .+++.|++++|+|+
T Consensus 624 riDmse~~evskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~-----------~v~n~llq~lD~GrltDs 692 (898)
T KOG1051|consen 624 RLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHP-----------DVLNILLQLLDRGRLTDS 692 (898)
T ss_pred EechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCH-----------HHHHHHHHHHhcCccccC
Confidence 999885 4343 777744 4788888888999999999999998 89999999999754
Q ss_pred ---------EEEEEecCchhH--H-H--------------------------H------HhhCcccccccccceeCCCCC
Q 013316 309 ---------VVVIFAGYSEPM--K-R--------------------------V------IASNEGFCRRVTKFFHFNDFN 344 (445)
Q Consensus 309 ---------~~~i~a~~~~~~--~-~--------------------------~------~~~~~~l~~R~~~~i~~~~~~ 344 (445)
.+||++.+...- . . . ....|.+..|.+..+.|.+++
T Consensus 693 ~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~ 772 (898)
T KOG1051|consen 693 HGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLD 772 (898)
T ss_pred CCcEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccc
Confidence 477776432111 0 0 0 001255666888899999999
Q ss_pred HHHHHHHHHHHHhccccccc
Q 013316 345 SEELAKILHIKMNNQTEDSL 364 (445)
Q Consensus 345 ~~~~~~il~~~l~~~~~~~~ 364 (445)
.+++.+|....+.+...++.
T Consensus 773 ~~~~~~i~~~~~~e~~~r~~ 792 (898)
T KOG1051|consen 773 RDELIEIVNKQLTEIEKRLE 792 (898)
T ss_pred hhhHhhhhhhHHHHHHHHhh
Confidence 99999999888776644433
No 254
>PHA02244 ATPase-like protein
Probab=99.41 E-value=3.6e-12 Score=119.75 Aligned_cols=125 Identities=22% Similarity=0.199 Sum_probs=81.5
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCc--hhHHH--HHHH-HccCcEEEEcCcc
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT--GPKTR--RRIK-EAEGGILFVDEAY 279 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~--~~~~~--~~~~-~a~~~il~lDEid 279 (445)
...+++|+||||||||++|+++|+.++. +|+.++...-...+.|.. ..... .++. ...+++|||||++
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~-------pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId 190 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDL-------DFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEID 190 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcC
Confidence 4568999999999999999999999876 777776421111122210 00111 1222 3478999999998
Q ss_pred ccccCCCCCCchhHHHHHHHHHhhccC-------------CcEEEEEecCchh--HHHH----HhhCcccccccccceeC
Q 013316 280 RLIPMQKADDKDYGIEALEEIMSVMDG-------------GKVVVIFAGYSEP--MKRV----IASNEGFCRRVTKFFHF 340 (445)
Q Consensus 280 ~l~~~~~~~~~~~~~~~~~~ll~~~~~-------------~~~~~i~a~~~~~--~~~~----~~~~~~l~~R~~~~i~~ 340 (445)
.+.+ +++..|...++. .++.+|+++++.. +... ...++++++|| ..|+|
T Consensus 191 ~a~p-----------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~ 258 (383)
T PHA02244 191 ASIP-----------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEF 258 (383)
T ss_pred cCCH-----------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeC
Confidence 8876 566666666642 3567777776531 1111 23479999999 67999
Q ss_pred CCCCHHHH
Q 013316 341 NDFNSEEL 348 (445)
Q Consensus 341 ~~~~~~~~ 348 (445)
+.|+..|.
T Consensus 259 dyp~~~E~ 266 (383)
T PHA02244 259 DYDEKIEH 266 (383)
T ss_pred CCCcHHHH
Confidence 99885443
No 255
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.40 E-value=6.8e-13 Score=132.60 Aligned_cols=124 Identities=27% Similarity=0.297 Sum_probs=112.7
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCC----------------------CCCCChHHHHHHhCCcHHHHHHhhc
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERN----------------------PVMAQTPLHVSAGYNKAEIVKSLLE 69 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~----------------------~~~g~tpLh~A~~~g~~~iv~~Ll~ 69 (445)
.|.||||.|+.+.+.+.|+.|+. .|+||+.+. -|.|..||.+||-.++++|+++|++
T Consensus 183 ~GqSaLHiAIv~~~~~~V~lLl~-~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~ 261 (782)
T KOG3676|consen 183 YGQSALHIAIVNRDAELVRLLLA-AGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA 261 (782)
T ss_pred cCcchHHHHHHhccHHHHHHHHH-cCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence 69999999999999999998775 577777531 1458899999999999999999999
Q ss_pred CCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCC--CcccccCCCChhhhhhcCCCChHHHHHHHhh
Q 013316 70 WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF--IEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141 (445)
Q Consensus 70 ~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~--~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~ 141 (445)
+ |+|++.+|..|+|.||..+.+-..++..+++++|++ ...+|..|.||| -+|+..+..++.+.+++.
T Consensus 262 ~----gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPL-tLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 262 H----GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPL-TLAAKLGKKEMFQHILER 330 (782)
T ss_pred c----CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChH-HHHHHhhhHHHHHHHHHh
Confidence 5 999999999999999999999999999999999999 899999999999 889999999999998877
No 256
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.40 E-value=3.6e-12 Score=113.61 Aligned_cols=186 Identities=18% Similarity=0.247 Sum_probs=114.9
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-----ccCC-----chh--HHHHHHHHccCc
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----FVGH-----TGP--KTRRRIKEAEGG 271 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~-----~~g~-----~~~--~~~~~~~~a~~~ 271 (445)
....+||+.||+|.||+.+||.|...-.. ..--+++|++++|+.+.+. +||+ ++. .-..++..|.||
T Consensus 206 rsr~p~ll~gptgagksflarriyelk~a-rhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 206 RSRAPILLNGPTGAGKSFLARRIYELKQA-RHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred hccCCeEeecCCCcchhHHHHHHHHHHHH-HHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCc
Confidence 45678999999999999999999875443 2234669999999987643 6776 221 223478899999
Q ss_pred EEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEe-------------cCchhHHHHHhh--Cccccccccc
Q 013316 272 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFA-------------GYSEPMKRVIAS--NEGFCRRVTK 336 (445)
Q Consensus 272 il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a-------------~~~~~~~~~~~~--~~~l~~R~~~ 336 (445)
.||||||..+.. +-+..|++.+++.++.-+++ |-.+.-..+.+. .+.|..|+ .
T Consensus 285 mlfldeigelga-----------deqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ari-n 352 (531)
T COG4650 285 MLFLDEIGELGA-----------DEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI-N 352 (531)
T ss_pred eEehHhhhhcCc-----------cHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhh-h
Confidence 999999966654 55678888888755433332 222211111000 02223344 3
Q ss_pred ceeCCCCC----HHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316 337 FFHFNDFN----SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNA 407 (445)
Q Consensus 337 ~i~~~~~~----~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~ 407 (445)
.+.|..|. .+++..-+..-+.+.....+ . ...+..++-...++...+...++.||.|++..-+.++
T Consensus 353 lwtf~lpgl~qr~ediepnldyelerha~~~g-~----~vrfntearra~l~fa~spqa~w~gnfrelsasvtrm 422 (531)
T COG4650 353 LWTFTLPGLRQRQEDIEPNLDYELERHASLTG-D----SVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRM 422 (531)
T ss_pred eeeeeccccccCccccCCCccHHHHHHHHhhC-c----eeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHH
Confidence 34555554 34444334333333322211 1 2234445655566666667788899999999998887
No 257
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.40 E-value=1.2e-12 Score=115.24 Aligned_cols=124 Identities=24% Similarity=0.252 Sum_probs=111.1
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc-ccCCCCcHHH
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA-QNMYGETPLH 90 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~-~d~~g~tpLh 90 (445)
.-..||..+.-+|+.+.+..||.. .-.+|.+|+ .|+++|..|+..|+.++|++||++ |+|+|. ++.-+.||||
T Consensus 11 ~~~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~-sGMs~LahAaykGnl~~v~lll~~----gaDvN~~qhg~~YTpLm 84 (396)
T KOG1710|consen 11 APKSPLLEAIDKNDTEAALALLST-VRQVNQRDP-SGMSVLAHAAYKGNLTLVELLLEL----GADVNDKQHGTLYTPLM 84 (396)
T ss_pred chhhHHHHHHccCcHHHHHHHHHH-hhhhhccCC-CcccHHHHHHhcCcHHHHHHHHHh----CCCcCcccccccccHHH
Confidence 346799999999999999999865 456899997 899999999999999999999997 899976 5667899999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhh
Q 013316 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS 142 (445)
Q Consensus 91 ~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~ 142 (445)
+|+..|+.+++++|++.|+.+...|.-|.|+- ..|+..|+.+++..+-.+.
T Consensus 85 FAALSGn~dvcrllldaGa~~~~vNsvgrTAa-qmAAFVG~H~CV~iINN~~ 135 (396)
T KOG1710|consen 85 FAALSGNQDVCRLLLDAGARMYLVNSVGRTAA-QMAAFVGHHECVAIINNHI 135 (396)
T ss_pred HHHHcCCchHHHHHHhccCccccccchhhhHH-HHHHHhcchHHHHHHhccc
Confidence 99999999999999999999999999999998 7788888899998875544
No 258
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.39 E-value=3.5e-12 Score=129.91 Aligned_cols=146 Identities=16% Similarity=0.233 Sum_probs=88.5
Q ss_pred HHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-----------------------cEEEEEecCchhH
Q 013316 264 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSEPM 320 (445)
Q Consensus 264 ~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------------------~~~~i~a~~~~~~ 320 (445)
.|.+|.+|+|||||++.+.+ ..+..|++.|+.+ ++.+|++++.+..
T Consensus 221 ~L~kAnGGtL~LDei~~L~~-----------~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll 289 (637)
T PRK13765 221 AIHKAHKGVLFIDEINTLDL-----------ESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDAL 289 (637)
T ss_pred ceeECCCcEEEEeChHhCCH-----------HHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHH
Confidence 56678899999999988865 6778888887543 3478888887654
Q ss_pred HHHHhhCcccccccc---cceeCCCCC---HHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhc-
Q 013316 321 KRVIASNEGFCRRVT---KFFHFNDFN---SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR- 393 (445)
Q Consensus 321 ~~~~~~~~~l~~R~~---~~i~~~~~~---~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~- 393 (445)
..+ +|.|++||. ..+.|..-. ++.+..+++ ++.+.... . ...+.++.+++..++.+++...-.+
T Consensus 290 ~~~---dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~-~iaqe~~~---~--G~l~~f~~eAVa~LI~~~~R~ag~r~ 360 (637)
T PRK13765 290 ENM---HPALRSRIKGYGYEVYMRDTMEDTPENRRKLVR-FVAQEVKR---D--GKIPHFDRDAVEEIIREAKRRAGRKG 360 (637)
T ss_pred Hhh---hHHHHHHhccCeEEEEcccccCCCHHHHHHHHH-HHHHHhhh---c--cCCCCCCHHHHHHHHHHHHHHhCCcc
Confidence 444 899999985 556665422 444444444 33322111 1 1234788999999998877332211
Q ss_pred --ccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316 394 --EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 438 (445)
Q Consensus 394 --~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~ 438 (445)
....|++.+++..|...+. .+....|+.+|+.+|+.
T Consensus 361 ~lsl~~~~l~~l~r~a~~~a~---------~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 361 HLTLKLRDLGGLVRVAGDIAR---------SEGAELTTAEHVLEAKK 398 (637)
T ss_pred ccccCHHHHHHHHHHHHHHHH---------hhccceecHHHHHHHHH
Confidence 1335667777776622211 11223466666665543
No 259
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.38 E-value=7.5e-12 Score=119.63 Aligned_cols=157 Identities=18% Similarity=0.199 Sum_probs=100.5
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeE-Ee-
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT-EV- 244 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~-~~- 244 (445)
.+.+|+|++.+++.+...+.. ...+..+||+||+|+|||++|+.+|+.+.+...-...+.. ..
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~---------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYRE---------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred chhhccCcHHHHHHHHHHHHc---------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 467799999999998885542 2345569999999999999999999998662110000000 00
Q ss_pred --ecc---ccccc----c--c----CC---------chhHHHHHH---HHc----cCcEEEEcCccccccCCCCCCchhH
Q 013316 245 --QRT---DLVGE----F--V----GH---------TGPKTRRRI---KEA----EGGILFVDEAYRLIPMQKADDKDYG 293 (445)
Q Consensus 245 --~~~---~l~~~----~--~----g~---------~~~~~~~~~---~~a----~~~il~lDEid~l~~~~~~~~~~~~ 293 (445)
.|. .+... + + .. +-..++++. ... ...|++|||+|.+..
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~---------- 155 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR---------- 155 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH----------
Confidence 110 00000 0 0 00 112333332 221 337999999999976
Q ss_pred HHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHH
Q 013316 294 IEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIK 355 (445)
Q Consensus 294 ~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 355 (445)
..++.|++.+++ .+.++|+.++... .+ .|.+++|| ..+.|++|+.+++.+++...
T Consensus 156 -~aanaLLk~LEEpp~~~~fiLit~~~~--~l---lptIrSRc-~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 156 -NAANAILKTLEEPPARALFILISHSSG--RL---LPTIRSRC-QPISLKPLDDDELKKALSHL 212 (351)
T ss_pred -HHHHHHHHHHhcCCCCceEEEEECChh--hc---cHHHHhhc-cEEEecCCCHHHHHHHHHHh
Confidence 778889999987 3334444333221 22 68899999 89999999999999999873
No 260
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.38 E-value=2.3e-12 Score=127.57 Aligned_cols=152 Identities=21% Similarity=0.264 Sum_probs=100.8
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcC------------
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG------------ 234 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~------------ 234 (445)
.+.++.|+..+++.+.- ......+++|+||||+|||++++.++..+....
T Consensus 189 d~~~v~Gq~~~~~al~l------------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s 250 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEI------------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILS 250 (506)
T ss_pred CeEEEECcHHHHhhhhe------------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhh
Confidence 56678888776655432 234567899999999999999999987653110
Q ss_pred ---------CCCCCCeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc
Q 013316 235 ---------ILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 305 (445)
Q Consensus 235 ---------~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~ 305 (445)
.+...||...+.+.-...++|.....-...+..|.+|||||||++.+.+ ..++.|++.|+
T Consensus 251 ~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~-----------~~~~~L~~~LE 319 (506)
T PRK09862 251 LVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFER-----------RTLDALREPIE 319 (506)
T ss_pred hhccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCH-----------HHHHHHHHHHH
Confidence 0112234433333222334453322334678999999999999966654 78888998887
Q ss_pred CCc---------------EEEEEecCchhHHH----------------HHhhCcccccccccceeCCCCCHHH
Q 013316 306 GGK---------------VVVIFAGYSEPMKR----------------VIASNEGFCRRVTKFFHFNDFNSEE 347 (445)
Q Consensus 306 ~~~---------------~~~i~a~~~~~~~~----------------~~~~~~~l~~R~~~~i~~~~~~~~~ 347 (445)
++. +.+|+++++.+-.. .-...+++++|||..+.++.++.++
T Consensus 320 ~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~ 392 (506)
T PRK09862 320 SGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGI 392 (506)
T ss_pred cCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHH
Confidence 643 57787777664111 1134678999999999999887553
No 261
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.38 E-value=5.1e-12 Score=111.15 Aligned_cols=129 Identities=15% Similarity=0.204 Sum_probs=85.5
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC-----------------CCeEEeecccccccccCCchhHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-----------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKE 267 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 267 (445)
.+..+||+||+|+|||++|+.+++.+........ ..+..+.... ... .-..++.+++.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~~--~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QSI--KVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---CcC--CHHHHHHHHHH
Confidence 4567999999999999999999999865311000 0111111110 000 12344444444
Q ss_pred c-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccce
Q 013316 268 A-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFF 338 (445)
Q Consensus 268 a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i 338 (445)
+ ...|++|||+|.+.+ ..++.|+..|++ ...++|+.++.. .. ..+++++|+ ..+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~-----------~~~~~Ll~~le~~~~~~~~il~~~~~--~~---l~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE-----------AAANALLKTLEEPPPNTLFILITPSP--EK---LLPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH-----------HHHHHHHHHhcCCCCCeEEEEEECCh--Hh---ChHHHHhhc-EEe
Confidence 3 347999999999976 667889999886 335555554432 22 378899999 799
Q ss_pred eCCCCCHHHHHHHHHHH
Q 013316 339 HFNDFNSEELAKILHIK 355 (445)
Q Consensus 339 ~~~~~~~~~~~~il~~~ 355 (445)
.|++|+.+++.+++...
T Consensus 151 ~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ 167 (188)
T ss_pred eCCCCCHHHHHHHHHHc
Confidence 99999999998887664
No 262
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.38 E-value=2.5e-12 Score=115.30 Aligned_cols=171 Identities=15% Similarity=0.215 Sum_probs=105.8
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCC-chhHHHHHHHHc-cCcEEEEcCcccccc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH-TGPKTRRRIKEA-EGGILFVDEAYRLIP 283 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~a-~~~il~lDEid~l~~ 283 (445)
..+++||||+|+|||.+.+++++++.... ....++.+++..+...+... ....+.+..+.- ..-+|+||+++.+..
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~--~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQH--PGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAG 111 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHC--TTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcc--ccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcC
Confidence 44689999999999999999999876521 12267788877765443221 011122222222 347999999999975
Q ss_pred CCCCCCchhHHHHHHHHHhhc----cCCcEEEEEecCc-hhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHH
Q 013316 284 MQKADDKDYGIEALEEIMSVM----DGGKVVVIFAGYS-EPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKM 356 (445)
Q Consensus 284 ~~~~~~~~~~~~~~~~ll~~~----~~~~~~~i~a~~~-~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l 356 (445)
+. ..+..|...+ +.++.+++.+... ..+. ..+|.|++||. ..+.+.+|+.+++..|++..+
T Consensus 112 ~~---------~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~---~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 112 KQ---------RTQEELFHLFNRLIESGKQLILTSDRPPSELS---GLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKA 179 (219)
T ss_dssp HH---------HHHHHHHHHHHHHHHTTSEEEEEESS-TTTTT---TS-HHHHHHHHCSEEEEE----HHHHHHHHHHHH
T ss_pred ch---------HHHHHHHHHHHHHHhhCCeEEEEeCCCCcccc---ccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHH
Confidence 32 2344444443 3466555555333 2222 23788999995 678999999999999999988
Q ss_pred hcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316 357 NNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAR 408 (445)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~ 408 (445)
.+.. ..++++++..+..+ + +.|.|.+..++.+..
T Consensus 180 ~~~~-----------~~l~~~v~~~l~~~-~------~~~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 180 KERG-----------IELPEEVIEYLARR-F------RRDVRELEGALNRLD 213 (219)
T ss_dssp HHTT-------------S-HHHHHHHHHH-T------TSSHHHHHHHHHHHH
T ss_pred HHhC-----------CCCcHHHHHHHHHh-h------cCCHHHHHHHHHHHH
Confidence 8642 23566677755544 3 668888888888763
No 263
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.37 E-value=3.6e-12 Score=130.24 Aligned_cols=133 Identities=20% Similarity=0.202 Sum_probs=94.9
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCch--hHH--------HHHHHHccCcEEEE
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG--PKT--------RRRIKEAEGGILFV 275 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~--~~~--------~~~~~~a~~~il~l 275 (445)
..+|||.|+||||||++||++|+.+... .+|+.+........++|... ..+ ...|.++.+|||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~-----~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~l 90 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPI-----MPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYV 90 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcC-----CCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEec
Confidence 4589999999999999999999987641 26777776444445555421 000 12455678899999
Q ss_pred cCccccccCCCCCCchhHHHHHHHHHhhccCCc---------------EEEEEecCchhHHHHHhhCcccccccccceeC
Q 013316 276 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHF 340 (445)
Q Consensus 276 DEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~ 340 (445)
|||+.+.+ ..++.|+..|+++. +.+|++.++.+.. ....++|.+||+.++.+
T Consensus 91 DEi~rl~~-----------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~--g~L~~~LldRf~l~v~~ 157 (589)
T TIGR02031 91 DMANLLDD-----------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGG--GGLPDHLLDRLALHVSL 157 (589)
T ss_pred cchhhCCH-----------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcccc--CCCCHHHHHhccCeeec
Confidence 99988887 88899999997653 4666655554311 12367899999987766
Q ss_pred CC-CCHHHHHHHHHHHH
Q 013316 341 ND-FNSEELAKILHIKM 356 (445)
Q Consensus 341 ~~-~~~~~~~~il~~~l 356 (445)
.. ++.+++.+|++.++
T Consensus 158 ~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 158 EDVASQDLRVEIVRRER 174 (589)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 54 45677889998766
No 264
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=2e-11 Score=115.17 Aligned_cols=158 Identities=18% Similarity=0.222 Sum_probs=105.7
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC-----------
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI----------- 235 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~----------- 235 (445)
.|++|+|++.+++.+.+.+.. ..-++..||+||+|+||+++|+++++.+.+...
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~---------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~ 66 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ---------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEE 66 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh---------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhccccc
Confidence 477899999999999886542 234678999999999999999999999865321
Q ss_pred CCCCCeEEeecccc-cccc--------cC-------C-chhHHHHHHHH-------ccCcEEEEcCccccccCCCCCCch
Q 013316 236 LPTDRVTEVQRTDL-VGEF--------VG-------H-TGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKD 291 (445)
Q Consensus 236 ~~~~~~~~~~~~~l-~~~~--------~g-------~-~~~~~~~~~~~-------a~~~il~lDEid~l~~~~~~~~~~ 291 (445)
.....+..+.+... .++. .| . .-..++++.+. +.+.|++||++|.+..
T Consensus 67 ~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~-------- 138 (314)
T PRK07399 67 GNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE-------- 138 (314)
T ss_pred CCCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH--------
Confidence 01111222222110 0110 01 0 01234444332 2458999999988876
Q ss_pred hHHHHHHHHHhhccC-CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHH
Q 013316 292 YGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM 356 (445)
Q Consensus 292 ~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l 356 (445)
.+.+.||+.|++ .+.++|+.++.. ..+ -|.+++|+ ..+.|++++.+++.+++....
T Consensus 139 ---~aaNaLLK~LEEPp~~~fILi~~~~--~~L---l~TI~SRc-q~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 139 ---AAANALLKTLEEPGNGTLILIAPSP--ESL---LPTIVSRC-QIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred ---HHHHHHHHHHhCCCCCeEEEEECCh--HhC---cHHHHhhc-eEEecCCCCHHHHHHHHHHhh
Confidence 778999999986 333445544322 222 58899998 999999999999999988753
No 265
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.37 E-value=2.2e-11 Score=114.89 Aligned_cols=160 Identities=21% Similarity=0.204 Sum_probs=105.9
Q ss_pred HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCe------
Q 013316 168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV------ 241 (445)
Q Consensus 168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~------ 241 (445)
|..++|++..+..|.-- .+ ...-.++|+.|+.|||||++||+|+..|.....+...+|
T Consensus 16 f~aivGqd~lk~aL~l~--av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 16 FTAIVGQDPLKLALGLN--AV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred hhhhcCchHHHHHHhhh--hc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 34589999988766531 11 234558999999999999999999999864332221111
Q ss_pred ---------------------------EEeecccccccccCC-ch-hHH--------HHHHHHccCcEEEEcCccccccC
Q 013316 242 ---------------------------TEVQRTDLVGEFVGH-TG-PKT--------RRRIKEAEGGILFVDEAYRLIPM 284 (445)
Q Consensus 242 ---------------------------~~~~~~~l~~~~~g~-~~-~~~--------~~~~~~a~~~il~lDEid~l~~~ 284 (445)
+......-...++|. .- +.+ ..++-+|..||||+||+-.|..
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d- 158 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDD- 158 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccH-
Confidence 111111111112332 00 011 1245667889999999955554
Q ss_pred CCCCCchhHHHHHHHHHhhccCC---------------cEEEEEecCchhHHHHHhhCcccccccccceeCCCCC-HHHH
Q 013316 285 QKADDKDYGIEALEEIMSVMDGG---------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEEL 348 (445)
Q Consensus 285 ~~~~~~~~~~~~~~~ll~~~~~~---------------~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~~~ 348 (445)
.+++.||..++.+ ++++|++.|+..-. +.|.|+.||...+....|+ .+++
T Consensus 159 ----------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGe----LrpqLlDRfg~~v~~~~~~~~~~r 224 (423)
T COG1239 159 ----------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGE----LRPQLLDRFGLEVDTHYPLDLEER 224 (423)
T ss_pred ----------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccc----cchhhHhhhcceeeccCCCCHHHH
Confidence 8899999988763 36788887776332 3799999999988766665 8999
Q ss_pred HHHHHHHHhc
Q 013316 349 AKILHIKMNN 358 (445)
Q Consensus 349 ~~il~~~l~~ 358 (445)
.+|+++.+..
T Consensus 225 v~Ii~r~~~f 234 (423)
T COG1239 225 VEIIRRRLAF 234 (423)
T ss_pred HHHHHHHHHh
Confidence 9999887664
No 266
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.37 E-value=1.2e-12 Score=95.44 Aligned_cols=98 Identities=23% Similarity=0.268 Sum_probs=85.7
Q ss_pred ChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcC
Q 013316 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNG 128 (445)
Q Consensus 49 ~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~ 128 (445)
..-+.|+..+|.++-|+-.+. .|.+||-.- .|++|||+|+-+|..++.++|+..||+++.+|+.|-||| ..|.-
T Consensus 3 d~~~~W~vkNG~~DeVk~~v~----~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPL-LsAvw 76 (117)
T KOG4214|consen 3 DMSVAWNVKNGEIDEVKQSVN----EGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPL-LSAVW 76 (117)
T ss_pred chhHhhhhccCcHHHHHHHHH----ccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHH-HHHHH
Confidence 356789999999999987776 377887543 799999999999999999999999999999999999999 88888
Q ss_pred CCChHHHHHHHhhhhhHHhhhhhh
Q 013316 129 PGSAKLRELLLWHSEEQRKRRALE 152 (445)
Q Consensus 129 ~~~~~i~~~ll~~~~~~~~~~~~~ 152 (445)
.++..++++|++.|++...+.+.+
T Consensus 77 EGH~~cVklLL~~GAdrt~~~PdG 100 (117)
T KOG4214|consen 77 EGHRDCVKLLLQNGADRTIHAPDG 100 (117)
T ss_pred HhhHHHHHHHHHcCcccceeCCCc
Confidence 999999999999999866555444
No 267
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.36 E-value=1.8e-12 Score=88.91 Aligned_cols=54 Identities=50% Similarity=0.660 Sum_probs=37.5
Q ss_pred CChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHH
Q 013316 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 105 (445)
Q Consensus 48 g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll 105 (445)
|+||||+||..|+.+++++|++. |.++|.+|.+|.||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~----~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEH----GADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHT----TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 56788888888888888888874 6777777888888888888888888887775
No 268
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=2.8e-11 Score=116.30 Aligned_cols=158 Identities=15% Similarity=0.170 Sum_probs=103.0
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC-------
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------- 239 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~------- 239 (445)
.+++|+|++.+++.+.+.+.. ...+..+||+||+|+||+++|.++|+.+.+.......
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~---------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRS---------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred chhhccChHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 466799999999998875442 2345569999999999999999999999653311100
Q ss_pred --------------------CeEEeecc--cccccccCC-chhHHHHHHHHc-------cCcEEEEcCccccccCCCCCC
Q 013316 240 --------------------RVTEVQRT--DLVGEFVGH-TGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADD 289 (445)
Q Consensus 240 --------------------~~~~~~~~--~l~~~~~g~-~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~ 289 (445)
.+..+... +-.+..... .-..++.+.+.. ...|++|||+|.+..
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------ 155 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------ 155 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------
Confidence 01111110 000000000 123344444332 347999999998876
Q ss_pred chhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHH
Q 013316 290 KDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM 356 (445)
Q Consensus 290 ~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l 356 (445)
..++.|++.+++ ...++|+.+..... + .|.+++|+ ..+.|++|+.+++.+++....
T Consensus 156 -----~aanaLLK~LEepp~~~~~IL~t~~~~~--l---lpti~SRc-~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 156 -----NAANALLKVLEEPPARSLFLLVSHAPAR--L---LPTIRSRC-RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred -----HHHHHHHHHHhcCCCCeEEEEEECCchh--c---hHHhhccc-eEEECCCCCHHHHHHHHHHhc
Confidence 788999999987 34455554443322 1 57789998 999999999999999987643
No 269
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=2.3e-12 Score=122.04 Aligned_cols=119 Identities=27% Similarity=0.258 Sum_probs=97.8
Q ss_pred HhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHc
Q 013316 16 TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKN 95 (445)
Q Consensus 16 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~ 95 (445)
-|.-|+..|.++.|+.++.+ -.++...++ .|-|+||-|+..||++||+||+. .|++||..|.+|+||||.|+++
T Consensus 553 LLLDaaLeGEldlVq~~i~e-v~DpSqpNd-EGITaLHNAiCaghyeIVkFLi~----~ganVNa~DSdGWTPLHCAASC 626 (752)
T KOG0515|consen 553 LLLDAALEGELDLVQRIIYE-VTDPSQPND-EGITALHNAICAGHYEIVKFLIE----FGANVNAADSDGWTPLHCAASC 626 (752)
T ss_pred HHHhhhhcchHHHHHHHHHh-hcCCCCCCc-cchhHHhhhhhcchhHHHHHHHh----cCCcccCccCCCCchhhhhhhc
Confidence 35688999999999998865 355666666 59999999999999999999999 4999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCCcccc-cCCCChhhhhhc-CCCChHHHHHHHh
Q 013316 96 GCNEAAKLLLAHGAFIEAKA-NEGKTPLDHLSN-GPGSAKLRELLLW 140 (445)
Q Consensus 96 g~~~~~~~Ll~~ga~~~~~~-~~g~tpl~~~a~-~~~~~~i~~~ll~ 140 (445)
+++.+++.|++.|+.+.+.. .++.||.+.+.. ..|+..|.++|..
T Consensus 627 Nnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~ 673 (752)
T KOG0515|consen 627 NNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG 673 (752)
T ss_pred CchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence 99999999999999987654 667888743221 2356667777643
No 270
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.35 E-value=9.5e-12 Score=126.43 Aligned_cols=204 Identities=14% Similarity=0.151 Sum_probs=115.6
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.+++++|+....+.|+.++..... ...+...++|+||||||||++++.++..++....--..++.+...
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~-----------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVL-----------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhccc-----------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 467899999998888887654421 122223488999999999999999999876411000001100000
Q ss_pred ccc------cccccC---CchhHHHHHHHHc-------------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHh--
Q 013316 247 TDL------VGEFVG---HTGPKTRRRIKEA-------------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS-- 302 (445)
Q Consensus 247 ~~l------~~~~~g---~~~~~~~~~~~~a-------------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~-- 302 (445)
+.. .+.-++ .....+.+.+..+ ...||||||++.+..... ..+..++.
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~--------~~lq~lLr~~ 222 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDT--------RALHEILRWK 222 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhH--------HHHHHHHHHH
Confidence 000 000011 1222333333332 236999999998764211 34555554
Q ss_pred hccCCcEEEEEecCchhH------HHHHh----hCccccc--ccccceeCCCCCHHHHHHHHHHHHhccccccccccccc
Q 013316 303 VMDGGKVVVIFAGYSEPM------KRVIA----SNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKL 370 (445)
Q Consensus 303 ~~~~~~~~~i~a~~~~~~------~~~~~----~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~ 370 (445)
..+.+++.+|++++..+. ...+. ..|++++ |+ .+|.|+++++.++...|+..+.+...... .
T Consensus 223 ~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~-----~ 296 (637)
T TIGR00602 223 YVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNG-----E 296 (637)
T ss_pred hhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccc-----c
Confidence 455677777776654322 11111 2367776 44 67999999999999999998886532111 0
Q ss_pred CCcc-cHHHHHHHHHHHHHHhhhcccC
Q 013316 371 HSSC-SMDAIAALIEKETTEKQRREMN 396 (445)
Q Consensus 371 ~~~~-~~~~l~~~~~~~~~~~~~~~~n 396 (445)
...+ +++++..++ ..+.||+|.+.|
T Consensus 297 ~~~~p~~~~l~~I~-~~s~GDiRsAIn 322 (637)
T TIGR00602 297 KIKVPKKTSVELLC-QGCSGDIRSAIN 322 (637)
T ss_pred ccccCCHHHHHHHH-HhCCChHHHHHH
Confidence 0111 345666554 456666666554
No 271
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.34 E-value=2.9e-12 Score=119.21 Aligned_cols=133 Identities=17% Similarity=0.118 Sum_probs=93.6
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc--ccCCchhH------H----HHHHHH--ccCc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE--FVGHTGPK------T----RRRIKE--AEGG 271 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~--~~g~~~~~------~----~~~~~~--a~~~ 271 (445)
..+++|.||||||||++|+.+|+.++. +++.++++.-... ++|..... . ...+-. ..++
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~-------~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~ 136 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNW-------PCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNV 136 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCC-------CeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCe
Confidence 468999999999999999999999987 8888887764433 55542111 0 112222 2567
Q ss_pred EEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----------------CcEEEEEecCchh-------HHHHHhhCc
Q 013316 272 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----------------GKVVVIFAGYSEP-------MKRVIASNE 328 (445)
Q Consensus 272 il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----------------~~~~~i~a~~~~~-------~~~~~~~~~ 328 (445)
+|++||++...+ ++++.|...++. ..+.+|++.|+.. +.-....++
T Consensus 137 illlDEin~a~p-----------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~ 205 (327)
T TIGR01650 137 ALCFDEYDAGRP-----------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQ 205 (327)
T ss_pred EEEechhhccCH-----------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCH
Confidence 899999998877 455555444442 2356777766643 232334478
Q ss_pred ccccccccceeCCCCCHHHHHHHHHHHH
Q 013316 329 GFCRRVTKFFHFNDFNSEELAKILHIKM 356 (445)
Q Consensus 329 ~l~~R~~~~i~~~~~~~~~~~~il~~~l 356 (445)
++++||-.++.++.|+.++-.+|+....
T Consensus 206 A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 206 AQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred HHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 9999997788999999999999987654
No 272
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.33 E-value=2e-11 Score=111.73 Aligned_cols=133 Identities=18% Similarity=0.220 Sum_probs=82.9
Q ss_pred CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhH-------HHHHhhCcccccccccceeCC
Q 013316 270 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPM-------KRVIASNEGFCRRVTKFFHFN 341 (445)
Q Consensus 270 ~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~-------~~~~~~~~~l~~R~~~~i~~~ 341 (445)
+|||||||+|.|-- +...-|-+.|++ ---++|+|||+... ..+.-+...|++|+ ..|...
T Consensus 292 pGVLFIDEvHmLDI-----------E~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl-lII~t~ 359 (450)
T COG1224 292 PGVLFIDEVHMLDI-----------ECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRL-LIISTR 359 (450)
T ss_pred cceEEEechhhhhH-----------HHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhhe-eEEecC
Confidence 38999999977753 666677777776 34466666654322 11222235577887 888999
Q ss_pred CCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCC
Q 013316 342 DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLD 421 (445)
Q Consensus 342 ~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~ 421 (445)
+|+.+|+.+|++..+.+. ...++++++..+..--.... .|..-+++.-+.-.+ .
T Consensus 360 py~~~EireIi~iRa~ee-----------~i~l~~~Ale~L~~ig~etS------LRYa~qLL~pa~iiA---------~ 413 (450)
T COG1224 360 PYSREEIREIIRIRAKEE-----------DIELSDDALEYLTDIGEETS------LRYAVQLLTPASIIA---------K 413 (450)
T ss_pred CCCHHHHHHHHHHhhhhh-----------ccccCHHHHHHHHhhchhhh------HHHHHHhccHHHHHH---------H
Confidence 999999999999988875 33567778886654333222 333344444331111 1
Q ss_pred hhhhhhccHHHHHHHHHHH
Q 013316 422 TDELRTITLEDLEAGLKLL 440 (445)
Q Consensus 422 ~~~~~~i~~~d~~~a~~~~ 440 (445)
..+...|..+|++.+-.-|
T Consensus 414 ~rg~~~V~~~dVe~a~~lF 432 (450)
T COG1224 414 RRGSKRVEVEDVERAKELF 432 (450)
T ss_pred HhCCCeeehhHHHHHHHHH
Confidence 1223367888888776544
No 273
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.31 E-value=3.5e-12 Score=126.07 Aligned_cols=138 Identities=26% Similarity=0.292 Sum_probs=120.3
Q ss_pred chHhHHHHHcCCHHHHHHHHhhC------------CCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316 14 PATIHGCAQSGDLLAFQRLLREN------------PSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (445)
Q Consensus 14 ~t~L~~A~~~g~~~~v~~ll~~~------------~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~ 81 (445)
.+-+..||..|+.+.+..+|... ...+|..|- +|.|+||.||.+|+.+++++|+++ .+-+++.
T Consensus 4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~-~gfTalhha~Lng~~~is~llle~----ea~ldl~ 78 (854)
T KOG0507|consen 4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDY-SGFTLLHHAVLNGQNQISKLLLDY----EALLDLC 78 (854)
T ss_pred hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCc-cchhHHHHHHhcCchHHHHHHhcc----hhhhhhh
Confidence 35678999999999999998752 245667774 899999999999999999999996 5678889
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET 157 (445)
Q Consensus 82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~ 157 (445)
|..|.+|||+|++.|+.+++++++..+..+|+.+..|.||| |.++..++.+++.+|+.+++++.-++.-..++..
T Consensus 79 d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tpl-hlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ld 153 (854)
T KOG0507|consen 79 DTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPL-HLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLD 153 (854)
T ss_pred hccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCcc-chhhhhcchHHHHHHHhcCCCccccCcccccHHH
Confidence 99999999999999999999999999999999999999999 8888899999999999999998777654444433
No 274
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.31 E-value=1.2e-10 Score=108.60 Aligned_cols=204 Identities=18% Similarity=0.202 Sum_probs=116.9
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE--eeccccc---ccccCCc-----hh----HHHHHH----HH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE--VQRTDLV---GEFVGHT-----GP----KTRRRI----KE 267 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~--~~~~~l~---~~~~g~~-----~~----~~~~~~----~~ 267 (445)
+..++|+||+|+|||++++.++..+..... ....+.. .+..++. ...+|.. .. .+...+ ..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~-~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~ 121 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERV-VAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAA 121 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCe-EEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 446889999999999999999988753111 0000000 1111111 1112321 11 111111 12
Q ss_pred ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc-C-CcEEEEEecCchhHHHHHh-hCcccccccccceeCCCCC
Q 013316 268 AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD-G-GKVVVIFAGYSEPMKRVIA-SNEGFCRRVTKFFHFNDFN 344 (445)
Q Consensus 268 a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~-~-~~~~~i~a~~~~~~~~~~~-~~~~l~~R~~~~i~~~~~~ 344 (445)
.+..+|+|||+|.+.+. ..+.+..|..... . ..+.+++++.+.....+.. ....+.+|+...+.+++++
T Consensus 122 ~~~~vliiDe~~~l~~~--------~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 122 GKRALLVVDEAQNLTPE--------LLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred CCCeEEEEECcccCCHH--------HHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 24579999999988641 1122333333222 2 2234456655543322211 1234777888889999999
Q ss_pred HHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhh
Q 013316 345 SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDE 424 (445)
Q Consensus 345 ~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~ 424 (445)
.+|..+++...+..... .-...++++++..+ ...+ .|+.+.+..++..+...... .+
T Consensus 194 ~~e~~~~l~~~l~~~g~-------~~~~~~~~~~~~~i-~~~s------~G~p~~i~~l~~~~~~~a~~---------~~ 250 (269)
T TIGR03015 194 REETREYIEHRLERAGN-------RDAPVFSEGAFDAI-HRFS------RGIPRLINILCDRLLLSAFL---------EE 250 (269)
T ss_pred HHHHHHHHHHHHHHcCC-------CCCCCcCHHHHHHH-HHHc------CCcccHHHHHHHHHHHHHHH---------cC
Confidence 99999999998875421 11234677776644 4555 67778888888877443222 12
Q ss_pred hhhccHHHHHHHHHHHH
Q 013316 425 LRTITLEDLEAGLKLLL 441 (445)
Q Consensus 425 ~~~i~~~d~~~a~~~~~ 441 (445)
...|+.++|.+++..+.
T Consensus 251 ~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 KREIGGEEVREVIAEID 267 (269)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 23799999999998764
No 275
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.31 E-value=1.7e-12 Score=89.46 Aligned_cols=47 Identities=49% Similarity=0.790 Sum_probs=22.9
Q ss_pred cccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChh
Q 013316 76 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122 (445)
Q Consensus 76 ~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl 122 (445)
.+++.+|..|.||||+|+.+|+.+++++|++.|++++.+|..|+||+
T Consensus 7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl 53 (56)
T PF13857_consen 7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPL 53 (56)
T ss_dssp --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HH
T ss_pred CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHH
Confidence 56666777777777777777777777777777777777777777776
No 276
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.31 E-value=2.3e-11 Score=116.16 Aligned_cols=150 Identities=17% Similarity=0.234 Sum_probs=100.8
Q ss_pred HHhhhc-chHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC-------
Q 013316 168 LSNIVG-LHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------- 239 (445)
Q Consensus 168 ~~~l~g-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~------- 239 (445)
|+.|+| ++.+++.+...+.. ...+...||+||+|+||+++|+.+++.+.+.......
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~---------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~ 68 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAK---------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTN 68 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHH
Confidence 667888 88888888875431 2345556999999999999999999998653211110
Q ss_pred ----------CeEEeecccccccccCCchhHHHHHHHH-------ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHh
Q 013316 240 ----------RVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS 302 (445)
Q Consensus 240 ----------~~~~~~~~~l~~~~~g~~~~~~~~~~~~-------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~ 302 (445)
.+..+... +..+ .-..++.+.+. +...|++|||+|.+.. ++++.|++
T Consensus 69 c~~~~~~~hpD~~~i~~~---~~~i--~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~-----------~a~NaLLK 132 (329)
T PRK08058 69 CKRIDSGNHPDVHLVAPD---GQSI--KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA-----------SAANSLLK 132 (329)
T ss_pred HHHHhcCCCCCEEEeccc---cccC--CHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH-----------HHHHHHHH
Confidence 11111111 0000 12344444432 2347999999988876 78899999
Q ss_pred hccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHH
Q 013316 303 VMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI 354 (445)
Q Consensus 303 ~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~ 354 (445)
.+++ ...++|+.++... .+ -|++++|+ ..++|++|+.+++.+.+..
T Consensus 133 ~LEEPp~~~~~Il~t~~~~--~l---l~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 133 FLEEPSGGTTAILLTENKH--QI---LPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhcCCCCCceEEEEeCChH--hC---cHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 9997 5566666554322 22 58899999 9999999999998777753
No 277
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.31 E-value=2.8e-11 Score=112.61 Aligned_cols=95 Identities=21% Similarity=0.276 Sum_probs=58.5
Q ss_pred CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHH-------HHHhhCcccccccccceeCC
Q 013316 270 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMK-------RVIASNEGFCRRVTKFFHFN 341 (445)
Q Consensus 270 ~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~-------~~~~~~~~l~~R~~~~i~~~ 341 (445)
+|||||||+|.|.- +...-|-+.|+. -.-++|+||++.... .+.-+...|++|+ ..|...
T Consensus 279 pGVLFIDEvHmLDi-----------EcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRl-lII~t~ 346 (398)
T PF06068_consen 279 PGVLFIDEVHMLDI-----------ECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRL-LIIRTK 346 (398)
T ss_dssp E-EEEEESGGGSBH-----------HHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTE-EEEEE-
T ss_pred cceEEecchhhccH-----------HHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhc-EEEECC
Confidence 39999999998875 777777788876 345666666533221 1111124578888 888999
Q ss_pred CCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHH
Q 013316 342 DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 387 (445)
Q Consensus 342 ~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 387 (445)
+|+.+|+.+|+...+++. ...++.+++..+..-..
T Consensus 347 py~~~ei~~Il~iR~~~E-----------~v~i~~~al~~L~~ig~ 381 (398)
T PF06068_consen 347 PYSEEEIKQILKIRAKEE-----------DVEISEDALDLLTKIGV 381 (398)
T ss_dssp ---HHHHHHHHHHHHHHC-----------T--B-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhhhh-----------cCcCCHHHHHHHHHHhh
Confidence 999999999999999875 23566778776654333
No 278
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.30 E-value=1.9e-12 Score=89.25 Aligned_cols=55 Identities=36% Similarity=0.636 Sum_probs=32.4
Q ss_pred HhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHH
Q 013316 33 LRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (445)
Q Consensus 33 l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A 92 (445)
|+..+.++|..|. .|.||||+||.+|+.+++++|++ .|++++.+|..|+||||+|
T Consensus 2 L~~~~~~~n~~d~-~G~T~LH~A~~~g~~~~v~~Ll~----~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 2 LEHGPADVNAQDK-YGNTPLHWAARYGHSEVVRLLLQ----NGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp ----T--TT---T-TS--HHHHHHHHT-HHHHHHHHH----CT--TT---TTS--HHHH-
T ss_pred CccCcCCCcCcCC-CCCcHHHHHHHcCcHHHHHHHHH----CcCCCCCCcCCCCCHHHhC
Confidence 4444588899997 79999999999999999999997 4899999999999999997
No 279
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.30 E-value=2.3e-11 Score=116.78 Aligned_cols=146 Identities=20% Similarity=0.217 Sum_probs=96.2
Q ss_pred hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCC-------------
Q 013316 170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL------------- 236 (445)
Q Consensus 170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~------------- 236 (445)
++++.+++...+..+.... ...+..+||+||||||||++|.++|+.+......
T Consensus 2 ~~~~~~~~~~~l~~~~~~~--------------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~ 67 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES--------------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKL 67 (325)
T ss_pred CcccchhHHHHHHHHHHhc--------------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhH
Confidence 3667777777776654322 1223349999999999999999999999753310
Q ss_pred ----CCCCeEEeecccccccccCCchhHHHHHHHH-------ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc
Q 013316 237 ----PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 305 (445)
Q Consensus 237 ----~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~-------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~ 305 (445)
....+.++++++....-+ ....++++.+. ....|++|||+|.+.. .+++.|++.++
T Consensus 68 ~~~~~~~d~lel~~s~~~~~~i--~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~-----------~A~nallk~lE 134 (325)
T COG0470 68 IPAGNHPDFLELNPSDLRKIDI--IVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE-----------DAANALLKTLE 134 (325)
T ss_pred HhhcCCCceEEecccccCCCcc--hHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH-----------HHHHHHHHHhc
Confidence 123677888877543211 12223333222 1347999999999987 78899999998
Q ss_pred C--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHH
Q 013316 306 G--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEEL 348 (445)
Q Consensus 306 ~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~ 348 (445)
. ....+|+.++.. ..+ -|.+++|+ ..++|++++....
T Consensus 135 ep~~~~~~il~~n~~--~~i---l~tI~SRc-~~i~f~~~~~~~~ 173 (325)
T COG0470 135 EPPKNTRFILITNDP--SKI---LPTIRSRC-QRIRFKPPSRLEA 173 (325)
T ss_pred cCCCCeEEEEEcCCh--hhc---cchhhhcc-eeeecCCchHHHH
Confidence 6 455666665521 222 57899999 9999998554444
No 280
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.29 E-value=1.5e-11 Score=103.36 Aligned_cols=124 Identities=23% Similarity=0.223 Sum_probs=76.3
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhH------HHHHHHHccCcEEEEcCc
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPK------TRRRIKEAEGGILFVDEA 278 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~------~~~~~~~a~~~il~lDEi 278 (445)
...+++++||||||||++++.++..+... ..+++.+++.............. ..........++|+|||+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~ 93 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRP----GAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEI 93 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcC----CCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeCh
Confidence 45689999999999999999999988532 23788888776544322111110 111222335699999999
Q ss_pred cccccCCCCCCchhHHHHHHHHHhhcc----CCcEEEEEecCchhHHHHHhhCcccccccccceeCCC
Q 013316 279 YRLIPMQKADDKDYGIEALEEIMSVMD----GGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND 342 (445)
Q Consensus 279 d~l~~~~~~~~~~~~~~~~~~ll~~~~----~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~ 342 (445)
+.+.+ .........+..... ..++.+|++++.... ...++.+.+||+..+.+++
T Consensus 94 ~~~~~-------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~---~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 94 DSLSR-------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLL---GDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred hhhhH-------HHHHHHHHHHHhcCceeccCCCeEEEEecCcccc---CCcChhHHhhhccEeecCC
Confidence 88733 111122222222222 256777777776553 2236778889988887763
No 281
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.29 E-value=1.8e-12 Score=108.17 Aligned_cols=108 Identities=28% Similarity=0.417 Sum_probs=68.4
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc--ccccCCchhH------HHHHHHH--ccCcEEEEcC
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV--GEFVGHTGPK------TRRRIKE--AEGGILFVDE 277 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~--~~~~g~~~~~------~~~~~~~--a~~~il~lDE 277 (445)
+|+|+||||||||++|+.+|+.++. +++.++++... ..++|.-... ....+-. .+++++||||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~-------~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDE 73 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGR-------PVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDE 73 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTC-------EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhc-------ceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECC
Confidence 6899999999999999999999965 77777776522 1122220000 0000110 1679999999
Q ss_pred ccccccCCCCCCchhHHHHHHHHHhhccCC---------------------cEEEEEecCchhHHHHHhhCccccccc
Q 013316 278 AYRLIPMQKADDKDYGIEALEEIMSVMDGG---------------------KVVVIFAGYSEPMKRVIASNEGFCRRV 334 (445)
Q Consensus 278 id~l~~~~~~~~~~~~~~~~~~ll~~~~~~---------------------~~~~i~a~~~~~~~~~~~~~~~l~~R~ 334 (445)
|+...+ +++..|+..++++ .+.+|++.++.. ...-..+++|++||
T Consensus 74 in~a~~-----------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 74 INRAPP-----------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-KGRKELSPALLDRF 139 (139)
T ss_dssp CGG--H-----------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST---TTTTCHHHHTT-
T ss_pred cccCCH-----------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-CCcCcCCHHHHhhC
Confidence 987775 7888888887651 167777777665 33334578899887
No 282
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=8.1e-11 Score=112.05 Aligned_cols=154 Identities=14% Similarity=0.246 Sum_probs=103.9
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC-CCCeEEee
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-TDRVTEVQ 245 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~-~~~~~~~~ 245 (445)
.|++++|++.+++.+...+.. ...+...||+||+|+|||++|+.+++.+.+..... ...+..+.
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~---------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~ 66 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK---------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFK 66 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc---------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEec
Confidence 378899999999988886531 23445678999999999999999999886532111 11232332
Q ss_pred cccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecC
Q 013316 246 RTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGY 316 (445)
Q Consensus 246 ~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~ 316 (445)
.. .+..+ .-..++.+.+.. ...|++||++|.+.. .+.+.|++.+++ ...++|+.++
T Consensus 67 ~~--~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~-----------~a~naLLK~LEepp~~t~~il~~~ 131 (313)
T PRK05564 67 PI--NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE-----------QAQNAFLKTIEEPPKGVFIILLCE 131 (313)
T ss_pred cc--cCCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcCH-----------HHHHHHHHHhcCCCCCeEEEEEeC
Confidence 21 11111 223455555422 347999999988876 778999999987 3344444443
Q ss_pred chhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHH
Q 013316 317 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM 356 (445)
Q Consensus 317 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l 356 (445)
+. .. .-|.+++|+ ..++|++++.+++...+....
T Consensus 132 ~~--~~---ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 132 NL--EQ---ILDTIKSRC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred Ch--Hh---CcHHHHhhc-eeeeCCCcCHHHHHHHHHHHh
Confidence 32 22 268899999 899999999999988776543
No 283
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.26 E-value=1.5e-11 Score=117.87 Aligned_cols=132 Identities=24% Similarity=0.285 Sum_probs=88.8
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc--cccccCCchhHHH----HHHHHccC-------c
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL--VGEFVGHTGPKTR----RRIKEAEG-------G 271 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l--~~~~~g~~~~~~~----~~~~~a~~-------~ 271 (445)
...+++|.||||||||++|+.+|..++. +|+.+.|..- -+..+|...-... ..+.-..+ +
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~-------~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ 114 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGL-------PFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRV 114 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCC-------CeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccce
Confidence 3569999999999999999999999986 8999988852 2334443222211 11111111 4
Q ss_pred EEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC--------------cEEEEEecCchhHHHHHhhCcccccccccc
Q 013316 272 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKF 337 (445)
Q Consensus 272 il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--------------~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~ 337 (445)
|+|+|||++..+ ++++.|+..|++. .+++|+++|+..........+++++||...
T Consensus 115 ill~DEInra~p-----------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~ 183 (329)
T COG0714 115 ILLLDEINRAPP-----------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLR 183 (329)
T ss_pred EEEEeccccCCH-----------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEE
Confidence 999999988877 8899999999862 234444545433333333468899999988
Q ss_pred eeCCCCCHH-HHHHHHHH
Q 013316 338 FHFNDFNSE-ELAKILHI 354 (445)
Q Consensus 338 i~~~~~~~~-~~~~il~~ 354 (445)
+.++.|+.+ +...++.+
T Consensus 184 ~~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 184 IYVDYPDSEEEERIILAR 201 (329)
T ss_pred EecCCCCchHHHHHHHHh
Confidence 999999544 44444443
No 284
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.26 E-value=7.6e-10 Score=96.28 Aligned_cols=196 Identities=20% Similarity=0.271 Sum_probs=125.8
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.+.+|+|.+..++.+.+-.... ....+..+||++|..||||++++|++..++...+. .+++|+.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F------------~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl----rLVEV~k 121 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQF------------AEGLPANNVLLWGARGTGKSSLVKALLNEYADEGL----RLVEVDK 121 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHH------------HcCCcccceEEecCCCCChHHHHHHHHHHHHhcCC----eEEEEcH
Confidence 4677999999998887633222 12346678999999999999999999999987655 6999998
Q ss_pred ccccccccCCchhHHHHHHHHc-cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC------CcEEEEEecCchh
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGYSEP 319 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~~~~i~a~~~~~ 319 (445)
+++.. -..+-+.++.. +.=|||+|+. +- +.+......|...+++ .++++-+++|+..
T Consensus 122 ~dl~~------Lp~l~~~Lr~~~~kFIlFcDDL---SF-------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 122 EDLAT------LPDLVELLRARPEKFILFCDDL---SF-------EEGDDAYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred HHHhh------HHHHHHHHhcCCceEEEEecCC---CC-------CCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 88742 12233333333 4579999986 11 1122455667777775 2445554444332
Q ss_pred HH-HHHhhC----------------cccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHH
Q 013316 320 MK-RVIASN----------------EGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL 382 (445)
Q Consensus 320 ~~-~~~~~~----------------~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 382 (445)
.. .....+ -+|..||.-.+.|++++.++-..|+++++++.. + +.+++.+..
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~---------l--~~~~e~l~~- 253 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFG---------L--DISDEELHA- 253 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcC---------C--CCCHHHHHH-
Confidence 22 111111 236679999999999999999999999998752 2 233444442
Q ss_pred HHHHHHHhhhcccCchhhHHHHHHH
Q 013316 383 IEKETTEKQRREMNGGLVDPMLVNA 407 (445)
Q Consensus 383 ~~~~~~~~~~~~~n~r~l~~~~~~~ 407 (445)
-+..| +..|..-+||-....+.-.
T Consensus 254 eAl~W-At~rg~RSGR~A~QF~~~~ 277 (287)
T COG2607 254 EALQW-ATTRGGRSGRVAWQFIRDL 277 (287)
T ss_pred HHHHH-HHhcCCCccHhHHHHHHHH
Confidence 22334 2234455677766666544
No 285
>PRK04132 replication factor C small subunit; Provisional
Probab=99.25 E-value=7.2e-11 Score=123.13 Aligned_cols=157 Identities=22% Similarity=0.214 Sum_probs=111.8
Q ss_pred eeEeec--CCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc---------cCcEEEEc
Q 013316 208 HMAFLG--NPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---------EGGILFVD 276 (445)
Q Consensus 208 ~vll~G--p~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a---------~~~il~lD 276 (445)
+-++.| |++.||||+|++||+.+...+ ...+++++++|+..+ -..+++++..+ +..|+|||
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~--~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIID 637 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGEN--WRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLD 637 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhccc--ccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEE
Confidence 455668 999999999999999984311 123799999998532 23445544331 23699999
Q ss_pred CccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHH
Q 013316 277 EAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI 354 (445)
Q Consensus 277 Eid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~ 354 (445)
|+|.+.+ .+++.|++.|+. +.+.+|+++++.. .+ .|++++|| ..+.|++|+.+++...++.
T Consensus 638 EaD~Lt~-----------~AQnALLk~lEep~~~~~FILi~N~~~--kI---i~tIrSRC-~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 638 EADALTQ-----------DAQQALRRTMEMFSSNVRFILSCNYSS--KI---IEPIQSRC-AIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred CcccCCH-----------HHHHHHHHHhhCCCCCeEEEEEeCChh--hC---chHHhhhc-eEEeCCCCCHHHHHHHHHH
Confidence 9999986 788999999995 6677777766432 22 68899998 9999999999999999998
Q ss_pred HHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316 355 KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNA 407 (445)
Q Consensus 355 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~ 407 (445)
.+.+.. ..++++++. .+...+.| +.|.+.++++.+
T Consensus 701 I~~~Eg-----------i~i~~e~L~-~Ia~~s~G------DlR~AIn~Lq~~ 735 (846)
T PRK04132 701 IAENEG-----------LELTEEGLQ-AILYIAEG------DMRRAINILQAA 735 (846)
T ss_pred HHHhcC-----------CCCCHHHHH-HHHHHcCC------CHHHHHHHHHHH
Confidence 777531 234566666 44466644 445555566654
No 286
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.25 E-value=1.5e-11 Score=84.22 Aligned_cols=54 Identities=33% Similarity=0.437 Sum_probs=44.6
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhh
Q 013316 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLL 68 (445)
Q Consensus 13 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll 68 (445)
|.||||+||..|+.++++.|+.. +.++|.+|. .|+||||+|+..|+.+++++||
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~-~~din~~d~-~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEH-GADINAQDE-DGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHT-TSGTT-B-T-TS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCC-CCCCHHHHHHHccCHHHHHHHC
Confidence 67999999999999999998865 899999987 7999999999999999999986
No 287
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.24 E-value=1.4e-10 Score=99.02 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=84.1
Q ss_pred cchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCC----------------
Q 013316 173 GLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---------------- 236 (445)
Q Consensus 173 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~---------------- 236 (445)
|++.+++.|.+.+.. ...+..+||+||+|+||+++|+.+++.+......
T Consensus 1 gq~~~~~~L~~~~~~---------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~ 65 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS---------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEG 65 (162)
T ss_dssp S-HHHHHHHHHHHHC---------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHc---------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhc
Confidence 677777777775542 2345568999999999999999999998654332
Q ss_pred CCCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--C
Q 013316 237 PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--G 307 (445)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~ 307 (445)
....+..+....... . -.-..++.+.+.. ...|++|||+|.+.. ++++.||+.||+ .
T Consensus 66 ~~~d~~~~~~~~~~~-~--i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~-----------~a~NaLLK~LEepp~ 131 (162)
T PF13177_consen 66 NHPDFIIIKPDKKKK-S--IKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE-----------EAQNALLKTLEEPPE 131 (162)
T ss_dssp -CTTEEEEETTTSSS-S--BSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H-----------HHHHHHHHHHHSTTT
T ss_pred cCcceEEEecccccc-h--hhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH-----------HHHHHHHHHhcCCCC
Confidence 122333333322100 0 0234555555443 347999999999987 899999999997 3
Q ss_pred cEEEEEecCchhHHHHHhhCcccccccccceeCCCCC
Q 013316 308 KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN 344 (445)
Q Consensus 308 ~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~ 344 (445)
..++|+.+++.... -|.+++|+ ..+.|++++
T Consensus 132 ~~~fiL~t~~~~~i-----l~TI~SRc-~~i~~~~ls 162 (162)
T PF13177_consen 132 NTYFILITNNPSKI-----LPTIRSRC-QVIRFRPLS 162 (162)
T ss_dssp TEEEEEEES-GGGS------HHHHTTS-EEEEE----
T ss_pred CEEEEEEECChHHC-----hHHHHhhc-eEEecCCCC
Confidence 56666654433221 58899998 888888764
No 288
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.23 E-value=2.2e-12 Score=102.33 Aligned_cols=109 Identities=25% Similarity=0.337 Sum_probs=58.4
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc-ccc-ccccCCchhHH-HHHHHHcc----CcEEEEcCccc
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT-DLV-GEFVGHTGPKT-RRRIKEAE----GGILFVDEAYR 280 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~-~l~-~~~~g~~~~~~-~~~~~~a~----~~il~lDEid~ 280 (445)
|+||.|+||+|||++|+++|+.++. .|..+.++ ++. +...|..--.. ...|+-.+ ..|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~-------~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGL-------SFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT---------EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCC-------ceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeeccccc
Confidence 6899999999999999999999876 77777664 322 22222200000 01111111 27999999977
Q ss_pred cccCCCCCCchhHHHHHHHHHhhccCCc-------------EEEEEecCchhHHHHHhhCccccccc
Q 013316 281 LIPMQKADDKDYGIEALEEIMSVMDGGK-------------VVVIFAGYSEPMKRVIASNEGFCRRV 334 (445)
Q Consensus 281 l~~~~~~~~~~~~~~~~~~ll~~~~~~~-------------~~~i~a~~~~~~~~~~~~~~~l~~R~ 334 (445)
..+ +.|+.|++.|++++ ++||++.|+.+..-......++++||
T Consensus 74 app-----------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 74 APP-----------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp S-H-----------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred CCH-----------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 666 88999999998644 35666656544333334456677776
No 289
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.22 E-value=5.8e-11 Score=96.44 Aligned_cols=94 Identities=44% Similarity=0.645 Sum_probs=85.8
Q ss_pred CCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhh
Q 013316 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLS 126 (445)
Q Consensus 47 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a 126 (445)
.|.||||+|+..++.+++++|++. +.+.+..+..|.||+|.|+..++.+++++|++.|++++..+..|.||+ +++
T Consensus 6 ~g~t~l~~a~~~~~~~~i~~li~~----~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l-~~a 80 (126)
T cd00204 6 DGRTPLHLAASNGHLEVVKLLLEN----GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPL-HLA 80 (126)
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHc----CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH-HHH
Confidence 699999999999999999999996 666688899999999999999999999999999999999999999999 778
Q ss_pred cCCCChHHHHHHHhhhhhH
Q 013316 127 NGPGSAKLRELLLWHSEEQ 145 (445)
Q Consensus 127 ~~~~~~~i~~~ll~~~~~~ 145 (445)
...++.+++++|+..+.+.
T Consensus 81 ~~~~~~~~~~~L~~~~~~~ 99 (126)
T cd00204 81 ARNGNLDVVKLLLKHGADV 99 (126)
T ss_pred HHcCcHHHHHHHHHcCCCC
Confidence 8888899999999876443
No 290
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.22 E-value=2.1e-10 Score=110.85 Aligned_cols=154 Identities=19% Similarity=0.262 Sum_probs=88.6
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
..++++++.+...+.+...+. ...+++|+||||||||++|+.+|..+..........++.++
T Consensus 172 ~~l~d~~i~e~~le~l~~~L~------------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFH 233 (459)
T PRK11331 172 DALNDLFIPETTIETILKRLT------------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFH 233 (459)
T ss_pred HHhhcccCCHHHHHHHHHHHh------------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeec
Confidence 346667777766666554321 35689999999999999999999987532111111233343
Q ss_pred cc----cccccc----cCCc--hhHHHHHHHHc-----cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc-----
Q 013316 246 RT----DLVGEF----VGHT--GPKTRRRIKEA-----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD----- 305 (445)
Q Consensus 246 ~~----~l~~~~----~g~~--~~~~~~~~~~a-----~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~----- 305 (445)
.+ ++++.+ .|.. ...+.+.+..| .+.+||||||++....+ +..+++..|+
T Consensus 234 psySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k----------iFGel~~lLE~~~rg 303 (459)
T PRK11331 234 QSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK----------VFGEVMMLMEHDKRG 303 (459)
T ss_pred ccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH----------hhhhhhhhccccccc
Confidence 32 232221 1211 11223333333 35899999998877532 2233333332
Q ss_pred -------------------CCcEEEEEecCchhHHHHHhhCcccccccccceeCCC-CCHHHHH
Q 013316 306 -------------------GGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND-FNSEELA 349 (445)
Q Consensus 306 -------------------~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~-~~~~~~~ 349 (445)
..++.+|+|.|..+- .+...|.+|+||| ..|++.+ ++.++..
T Consensus 304 ~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Dr-s~~~lD~AlrRRF-~fi~i~p~~~~~~~~ 365 (459)
T PRK11331 304 ENWSVPLTYSENDEERFYVPENVYIIGLMNTADR-SLAVVDYALRRRF-SFIDIEPGFDTPQFR 365 (459)
T ss_pred cccceeeeccccccccccCCCCeEEEEecCcccc-chhhccHHHHhhh-heEEecCCCChHHHH
Confidence 135678887766553 2334599999999 5555554 5554333
No 291
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.22 E-value=2.8e-11 Score=109.44 Aligned_cols=180 Identities=16% Similarity=0.183 Sum_probs=115.5
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.+.++++++++...+.++.. ...-+|+|||||||||||+...+.|..+..+.. .+.-+.+++.
T Consensus 39 ~l~dv~~~~ei~st~~~~~~----------------~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~-~~~m~lelna 101 (360)
T KOG0990|consen 39 FLGIVIKQEPIWSTENRYSG----------------MPGLPHLLFYGPPGTGKTSTILANARDFYSPHP-TTSMLLELNA 101 (360)
T ss_pred hhhhHhcCCchhhHHHHhcc----------------CCCCCcccccCCCCCCCCCchhhhhhhhcCCCC-chhHHHHhhc
Confidence 45678999988887777522 334449999999999999999999998876311 0001333444
Q ss_pred ccccccccCCchhHHHHHHHHcc----------CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEE-EEE
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEAE----------GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVV-VIF 313 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a~----------~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~-~i~ 313 (445)
|+-.+.- ......+.|..++ -..++|||+|.... .+|+.|-+.++. .+.+ ++.
T Consensus 102 Sd~rgid---~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~-----------~AQnALRRviek~t~n~rF~ii 167 (360)
T KOG0990|consen 102 SDDRGID---PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR-----------DAQNALRRVIEKYTANTRFATI 167 (360)
T ss_pred cCccCCc---chHHHHHHHHhhccceeccccCceeEEEecchhHhhH-----------HHHHHHHHHHHHhccceEEEEe
Confidence 4322211 1112223333332 36899999988775 788888887765 2222 233
Q ss_pred ecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhc
Q 013316 314 AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 393 (445)
Q Consensus 314 a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 393 (445)
+.+. . .+.|++++|| ..+.|.+.+..+....+.+.+.... ...+++.... ....+.||+|.
T Consensus 168 ~n~~---~---ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~-----------~~~~~~~~~a-~~r~s~gDmr~ 228 (360)
T KOG0990|consen 168 SNPP---Q---KIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQ-----------KETNPEGYSA-LGRLSVGDMRV 228 (360)
T ss_pred ccCh---h---hcCchhhccc-ccCCCCCCChhhhhhHHHHHHhcch-----------hhcCHHHHHH-HHHHhHHHHHH
Confidence 3222 2 2379999999 9999999999999999999887653 2334444443 33556677766
Q ss_pred ccC
Q 013316 394 EMN 396 (445)
Q Consensus 394 ~~n 396 (445)
..|
T Consensus 229 a~n 231 (360)
T KOG0990|consen 229 ALN 231 (360)
T ss_pred HHH
Confidence 554
No 292
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=7.8e-11 Score=119.44 Aligned_cols=208 Identities=25% Similarity=0.323 Sum_probs=147.0
Q ss_pred CCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHcc---CcEEEEcC
Q 013316 201 VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDE 277 (445)
Q Consensus 201 ~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDE 277 (445)
.+..++.+++++||||||||++++.++.. .. .+..++.+...+++.|++....+..|..+. .+++|+||
T Consensus 13 ~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~ 84 (494)
T COG0464 13 LGIEPPKGVLLHGPPGTGKTLLARALANE-GA-------EFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDE 84 (494)
T ss_pred hCCCCCCCceeeCCCCCchhHHHHHHHhc-cC-------cccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeech
Confidence 44678899999999999999999999988 22 337788888999999999999999987773 38999999
Q ss_pred ccccccCCCCCCchhHHHHHHHHHhhccC---CcEEEEEecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHH
Q 013316 278 AYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKIL 352 (445)
Q Consensus 278 id~l~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~i~a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il 352 (445)
+|.+.+.+..........+...++..++. +.++++.+++.... .++++++ ||+..+.++.++...+.+|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 85 IDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDG-----LDPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred hhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCccc-----cChhHhCccccceeeecCCCCHHHHHHHH
Confidence 99999988875566777888888888875 33555554333322 3677666 99999999999999888888
Q ss_pred HHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHH
Q 013316 353 HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLED 432 (445)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 432 (445)
......+. .....+.+.++.....++ +.++..+...+......+.. ........++.+|
T Consensus 160 ~~~~~~~~---------~~~~~~~~~~a~~~~~~~---------~~~~~~l~~~~~~~~~~r~~---~~~~~~~~~~~~~ 218 (494)
T COG0464 160 QIHTRLMF---------LGPPGTGKTLAARTVGKS---------GADLGALAKEAALRELRRAI---DLVGEYIGVTEDD 218 (494)
T ss_pred HHHHhcCC---------CcccccHHHHHHhcCCcc---------HHHHHHHHHHHHHHHHHhhh---ccCcccccccHHH
Confidence 87666542 222445555554444444 44455555444333333321 1112344678888
Q ss_pred HHHHHHHHHh
Q 013316 433 LEAGLKLLLR 442 (445)
Q Consensus 433 ~~~a~~~~~~ 442 (445)
+.++++.+.+
T Consensus 219 ~~~~l~~~~~ 228 (494)
T COG0464 219 FEEALKKVLP 228 (494)
T ss_pred HHHHHHhcCc
Confidence 8888877654
No 293
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.21 E-value=3.7e-10 Score=112.30 Aligned_cols=188 Identities=19% Similarity=0.257 Sum_probs=121.1
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHH-----------------HHcCCCCCCCCCC-eeEeecCCCCchhHHHHHH
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERR-----------------KALGLKVGARRPP-HMAFLGNPGTGKTMVARIL 226 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~-~vll~Gp~GtGKt~~A~~l 226 (445)
-..|.+|.|-+.+-+.+.-|++..-.--+. ..........++. -+||+||||-||||+|+.|
T Consensus 267 Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHVi 346 (877)
T KOG1969|consen 267 PKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVI 346 (877)
T ss_pred hhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHH
Confidence 345777888888877777766543211111 1111222223333 4678999999999999999
Q ss_pred HHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc-----------cCcEEEEcCccccccCCCCCCchhHHH
Q 013316 227 GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-----------EGGILFVDEAYRLIPMQKADDKDYGIE 295 (445)
Q Consensus 227 a~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-----------~~~il~lDEid~l~~~~~~~~~~~~~~ 295 (445)
|+..+. .++++++|+-. ++..+.+.+..| ++..|+|||||.-.+ .
T Consensus 347 AkqaGY-------sVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~-----------~ 402 (877)
T KOG1969|consen 347 AKQAGY-------SVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPR-----------A 402 (877)
T ss_pred HHhcCc-------eEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcH-----------H
Confidence 999887 89999999853 334444433332 457899999976542 4
Q ss_pred HHHHHHhhccC---------C----------------cEEEEEecCchhHHHHHhhCccccc--ccccceeCCCCCHHHH
Q 013316 296 ALEEIMSVMDG---------G----------------KVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEEL 348 (445)
Q Consensus 296 ~~~~ll~~~~~---------~----------------~~~~i~a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~ 348 (445)
+++.++..+.. + .|++||- +.+ .|+||. -|..+|.|++|+..-+
T Consensus 403 ~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICN------dLY---aPaLR~Lr~~A~ii~f~~p~~s~L 473 (877)
T KOG1969|consen 403 AVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICN------DLY---APALRPLRPFAEIIAFVPPSQSRL 473 (877)
T ss_pred HHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEec------Ccc---chhhhhcccceEEEEecCCChhHH
Confidence 55555555541 0 1344442 111 477765 4668999999999999
Q ss_pred HHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316 349 AKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 397 (445)
Q Consensus 349 ~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~ 397 (445)
.+-|+..+.++. -.++..+|..++. ++..|+|.-.|.
T Consensus 474 v~RL~~IC~rE~-----------mr~d~~aL~~L~e-l~~~DIRsCINt 510 (877)
T KOG1969|consen 474 VERLNEICHREN-----------MRADSKALNALCE-LTQNDIRSCINT 510 (877)
T ss_pred HHHHHHHHhhhc-----------CCCCHHHHHHHHH-HhcchHHHHHHH
Confidence 988888887752 2556678887774 455677765553
No 294
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.20 E-value=3.4e-10 Score=108.32 Aligned_cols=179 Identities=16% Similarity=0.205 Sum_probs=115.3
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc-cCcEEEEcCcccccc
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIP 283 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~l~~ 283 (445)
...+++||||+|.|||.+++++++.....+. ...++.++...+...++-..-.+-...|++. .--+|+||+|+.+..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~--~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGP--NARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCC--CceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcC
Confidence 4678999999999999999999999876432 2346667766665444322111111222221 235899999999987
Q ss_pred CCCCCCchhHHHHHHHHHhhccCCcEEEEEec-CchhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhccc
Q 013316 284 MQKADDKDYGIEALEEIMSVMDGGKVVVIFAG-YSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQT 360 (445)
Q Consensus 284 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~-~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~ 360 (445)
+.. ...+....+-...+.++-+++.+. .+..+.. ..|.|++||. ..+.+.+|+.+.+..|+.......
T Consensus 190 k~~-----~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~---~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~- 260 (408)
T COG0593 190 KER-----TQEEFFHTFNALLENGKQIVLTSDRPPKELNG---LEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDR- 260 (408)
T ss_pred Chh-----HHHHHHHHHHHHHhcCCEEEEEcCCCchhhcc---ccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhc-
Confidence 532 112344444455556664444433 2333332 3689999995 667999999999999999866553
Q ss_pred ccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhh
Q 013316 361 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 411 (445)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~ 411 (445)
...++++++..+.. .. ..|.|++..++++.....
T Consensus 261 ----------~~~i~~ev~~~la~-~~------~~nvReLegaL~~l~~~a 294 (408)
T COG0593 261 ----------GIEIPDEVLEFLAK-RL------DRNVRELEGALNRLDAFA 294 (408)
T ss_pred ----------CCCCCHHHHHHHHH-Hh------hccHHHHHHHHHHHHHHH
Confidence 23556666665544 33 578888888888875543
No 295
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.16 E-value=2e-09 Score=101.42 Aligned_cols=78 Identities=19% Similarity=0.206 Sum_probs=57.6
Q ss_pred cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc-------------EEEEEecCchhHHHH--HhhCcccccc
Q 013316 269 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-------------VVVIFAGYSEPMKRV--IASNEGFCRR 333 (445)
Q Consensus 269 ~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-------------~~~i~a~~~~~~~~~--~~~~~~l~~R 333 (445)
..||+-++|+.+... +++..||..++++. .++|+++|+.++... ....++|++|
T Consensus 236 NrGi~~f~Ei~K~~~-----------~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR 304 (361)
T smart00763 236 NRGILEFVEMFKADI-----------KFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDR 304 (361)
T ss_pred cCceEEEeehhcCCH-----------HHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhc
Confidence 448888889877665 88999999988633 366777777776654 2446899999
Q ss_pred cccceeCCCCC-HHHHHHHHHHHHhc
Q 013316 334 VTKFFHFNDFN-SEELAKILHIKMNN 358 (445)
Q Consensus 334 ~~~~i~~~~~~-~~~~~~il~~~l~~ 358 (445)
|. .+.+|.+. .++=.+|.++.+..
T Consensus 305 ~~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 305 II-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred eE-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 94 88888776 56667788877764
No 296
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.16 E-value=1.7e-09 Score=95.92 Aligned_cols=185 Identities=22% Similarity=0.291 Sum_probs=115.5
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC-----------
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI----------- 235 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~----------- 235 (445)
.++.+.+.++....++.+.. ...-+|++||||+|+||-|.+-++-++++-.++
T Consensus 11 sl~~l~~~~e~~~~Lksl~~----------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~ 74 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSS----------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFT 74 (351)
T ss_pred hhhhcccHHHHHHHHHHhcc----------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEe
Confidence 34556666666555554311 233579999999999999999999888865442
Q ss_pred -----------CCCCCeEEeecccccccccCC-chhHHHHHHHHc------------cCcEEEEcCccccccCCCCCCch
Q 013316 236 -----------LPTDRVTEVQRTDLVGEFVGH-TGPKTRRRIKEA------------EGGILFVDEAYRLIPMQKADDKD 291 (445)
Q Consensus 236 -----------~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~a------------~~~il~lDEid~l~~~~~~~~~~ 291 (445)
+.+.+-+++++|+ .|. ...-+.+++++. ...+++|.|+|.|..
T Consensus 75 tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~-------- 141 (351)
T KOG2035|consen 75 TPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR-------- 141 (351)
T ss_pred cCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH--------
Confidence 1111222222222 233 223334444332 227999999999986
Q ss_pred hHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccc
Q 013316 292 YGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK 369 (445)
Q Consensus 292 ~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~ 369 (445)
++|..|-+-|+. +...+|+..+.- ..+ -+++++|+ ..|++|.|+.+|+..++...+.+.. +.
T Consensus 142 ---dAQ~aLRRTMEkYs~~~RlIl~cns~--Sri---IepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~-------l~ 205 (351)
T KOG2035|consen 142 ---DAQHALRRTMEKYSSNCRLILVCNST--SRI---IEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEG-------LQ 205 (351)
T ss_pred ---HHHHHHHHHHHHHhcCceEEEEecCc--ccc---hhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhc-------cc
Confidence 788888888875 445555443321 222 47789998 8899999999999999999998752 33
Q ss_pred cCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316 370 LHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNA 407 (445)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~ 407 (445)
+ . +.+...+...+ .+|.|..--++|.+
T Consensus 206 l----p-~~~l~rIa~kS------~~nLRrAllmlE~~ 232 (351)
T KOG2035|consen 206 L----P-KELLKRIAEKS------NRNLRRALLMLEAV 232 (351)
T ss_pred C----c-HHHHHHHHHHh------cccHHHHHHHHHHH
Confidence 2 2 34555666666 34444444444443
No 297
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=2.7e-10 Score=108.10 Aligned_cols=131 Identities=13% Similarity=0.112 Sum_probs=89.7
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC-----------------CeEEeecccccccccCCchhHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD-----------------RVTEVQRTDLVGEFVGHTGPKTRRRIKE 267 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 267 (445)
.+..+||+||+|+|||++|+.+|+.+.+....... .+..+.+..- ++. -.-..++.+.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~--i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKT--IKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCC--CCHHHHHHHHHH
Confidence 45679999999999999999999999763211111 1222211100 000 022445555433
Q ss_pred c-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccce
Q 013316 268 A-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFF 338 (445)
Q Consensus 268 a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i 338 (445)
. ...|++||++|++.. .+.|.||+.+++ +..++|++|+..... -|.+++|+ +.+
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~-----------~aaNaLLK~LEEPp~~~~fiL~t~~~~~l-----l~TI~SRc-~~~ 160 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNR-----------NAANALLKSLEEPSGDTVLLLISHQPSRL-----LPTIKSRC-QQQ 160 (328)
T ss_pred HhhccccCCCeEEEECChhhCCH-----------HHHHHHHHHHhCCCCCeEEEEEECChhhC-----cHHHHhhc-eee
Confidence 3 347999999999987 888999999997 566666665543332 68899999 889
Q ss_pred eCCCCCHHHHHHHHHHH
Q 013316 339 HFNDFNSEELAKILHIK 355 (445)
Q Consensus 339 ~~~~~~~~~~~~il~~~ 355 (445)
.|++|+.++..+.+...
T Consensus 161 ~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 161 ACPLPSNEESLQWLQQA 177 (328)
T ss_pred eCCCcCHHHHHHHHHHh
Confidence 99999999998887654
No 298
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.15 E-value=1.1e-09 Score=100.32 Aligned_cols=209 Identities=17% Similarity=0.171 Sum_probs=129.0
Q ss_pred hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcC--CCCCCCeEEeecc
Q 013316 170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG--ILPTDRVTEVQRT 247 (445)
Q Consensus 170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~--~~~~~~~~~~~~~ 247 (445)
..||...+++.+..+-.-+..| ....++++||+|++|.|||++++.+........ -....|++.+...
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P----------~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P 104 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYP----------KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMP 104 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCC----------cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecC
Confidence 3788887776666543323222 234567899999999999999999987653211 0112266666544
Q ss_pred c------cccc-----ccCC----c----hhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc
Q 013316 248 D------LVGE-----FVGH----T----GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK 308 (445)
Q Consensus 248 ~------l~~~-----~~g~----~----~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~ 308 (445)
. |... +... + ...+..+|+...-.+|+|||+|.+...+. ..-.++++.|...-++-+
T Consensus 105 ~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~----~~qr~~Ln~LK~L~NeL~ 180 (302)
T PF05621_consen 105 PEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY----RKQREFLNALKFLGNELQ 180 (302)
T ss_pred CCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH----HHHHHHHHHHHHHhhccC
Confidence 3 1111 1111 1 11223466666778999999999865221 122345555555555677
Q ss_pred EEEEEecCchhHHHHHhhCcccccccccceeCCCCC-HHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHH
Q 013316 309 VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 387 (445)
Q Consensus 309 ~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 387 (445)
+.+|+.++.+... .+..|+.+.+|| ..+.+|... .++...++..+-....- .-...+....++..+-..+
T Consensus 181 ipiV~vGt~~A~~-al~~D~QLa~RF-~~~~Lp~W~~d~ef~~LL~s~e~~LPL-------r~~S~l~~~~la~~i~~~s 251 (302)
T PF05621_consen 181 IPIVGVGTREAYR-ALRTDPQLASRF-EPFELPRWELDEEFRRLLASFERALPL-------RKPSNLASPELARRIHERS 251 (302)
T ss_pred CCeEEeccHHHHH-HhccCHHHHhcc-CCccCCCCCCCcHHHHHHHHHHHhCCC-------CCCCCCCCHHHHHHHHHHc
Confidence 8888888877665 567799999999 777777776 45666666665544321 2223345556665554544
Q ss_pred HHhhhcccCchhhHHHHHHH
Q 013316 388 TEKQRREMNGGLVDPMLVNA 407 (445)
Q Consensus 388 ~~~~~~~~n~r~l~~~~~~~ 407 (445)
.|+..++.+++..|
T Consensus 252 ------~G~iG~l~~ll~~a 265 (302)
T PF05621_consen 252 ------EGLIGELSRLLNAA 265 (302)
T ss_pred ------CCchHHHHHHHHHH
Confidence 56777788888877
No 299
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.13 E-value=1e-10 Score=121.92 Aligned_cols=153 Identities=25% Similarity=0.290 Sum_probs=112.8
Q ss_pred HHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCC
Q 013316 51 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPG 130 (445)
Q Consensus 51 pLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~ 130 (445)
.|+.|+..|+.+++++|++. |+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||| |+|...+
T Consensus 85 ~L~~aa~~G~~~~vk~LL~~----Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpL-h~A~~~g 159 (664)
T PTZ00322 85 ELCQLAASGDAVGARILLTG----GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPL-ELAEENG 159 (664)
T ss_pred HHHHHHHcCCHHHHHHHHHC----CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHCC
Confidence 58899999999999999995 889999999999999999999999999999999999999999999999 8888999
Q ss_pred ChHHHHHHHhh-------hhhHHhhhhhhhhhhhHHhHHHHHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCC
Q 013316 131 SAKLRELLLWH-------SEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA 203 (445)
Q Consensus 131 ~~~i~~~ll~~-------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 203 (445)
+.+++++|+.+ +++.......+..+ +....+....=.+ .. ......
T Consensus 160 ~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~---------------~~~~~~~~~~~~d---~~---------~~p~p~ 212 (664)
T PTZ00322 160 FREVVQLLSRHSQCHFELGANAKPDSFTGKPP---------------SLEDSPISSHHPD---FS---------AVPQPM 212 (664)
T ss_pred cHHHHHHHHhCCCcccccCCCCCccccCCCCc---------------cchhhhhhhcccc---cc---------ccCccc
Confidence 99999999988 33322222111100 0000000000000 00 000011
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHcCC
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGI 235 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~ 235 (445)
.....+++.|.||+|||++|+.|++.+.+.++
T Consensus 213 ~~~~~~~~vglp~~GKStia~~L~~~l~~~~~ 244 (664)
T PTZ00322 213 MGSLIVIMVGLPGRGKTYVARQIQRYFQWNGL 244 (664)
T ss_pred ccceeEEecccCCCChhHHHHHHHHHHHhcCC
Confidence 22346889999999999999999999987543
No 300
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.10 E-value=2.8e-10 Score=102.75 Aligned_cols=102 Identities=34% Similarity=0.422 Sum_probs=89.8
Q ss_pred CCccCccCCC-CCchHhHHHHHcCC-----HHHHHHHHhhCC--CCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCC
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGD-----LLAFQRLLRENP--SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN 73 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~-----~~~v~~ll~~~~--~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~ 73 (445)
+.|++++..+ .|.||||+|+..|+ .++++.++.... ...+..+. .|+||||+|+..|+.+++++|+..
T Consensus 94 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~-~g~tpl~~A~~~~~~~~~~~ll~~--- 169 (235)
T COG0666 94 ASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE-DGNTPLHWAALNGDADIVELLLEA--- 169 (235)
T ss_pred HcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC-CCCchhHHHHHcCchHHHHHHHhc---
Confidence 4577777776 69999999999999 999998887544 25556575 899999999999999999999995
Q ss_pred CCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 013316 74 DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108 (445)
Q Consensus 74 ~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~g 108 (445)
|++++..+.+|.|++++|+..++.+++..++..+
T Consensus 170 -~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 170 -GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred -CCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence 8899999999999999999999999999999976
No 301
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.10 E-value=8e-09 Score=102.76 Aligned_cols=207 Identities=18% Similarity=0.205 Sum_probs=134.7
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHH---HcCCCCCCCeEEeeccccccc----------ccCCc------hhHHHHHHH-
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLY---MVGILPTDRVTEVQRTDLVGE----------FVGHT------GPKTRRRIK- 266 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~---~~~~~~~~~~~~~~~~~l~~~----------~~g~~------~~~~~~~~~- 266 (445)
..|.++|-||||||.+++.+-..+. ..+.++.-.++++++-.+.+- +.|+. -..+...|.
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 3688999999999999999988776 334455558889988775432 23431 112223333
Q ss_pred ---HccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc--CCcEEEEE-ecCchhHHHHHhhCcccccccc-ccee
Q 013316 267 ---EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD--GGKVVVIF-AGYSEPMKRVIASNEGFCRRVT-KFFH 339 (445)
Q Consensus 267 ---~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~i~-a~~~~~~~~~~~~~~~l~~R~~-~~i~ 339 (445)
....+||+|||.|.|..+.| +++-.|...-. ..+++||+ |+|-+.-.+++ .+...+|++ ..|.
T Consensus 503 ~k~~~~~~VvLiDElD~Lvtr~Q--------dVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l--~nrvsSRlg~tRi~ 572 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVTRSQ--------DVLYNIFDWPTLKNSKLVVIAIANTMDLPERLL--MNRVSSRLGLTRIC 572 (767)
T ss_pred CCCCCCCEEEEeccHHHHhcccH--------HHHHHHhcCCcCCCCceEEEEecccccCHHHHh--ccchhhhccceeee
Confidence 11348999999999998655 45444444332 35666666 55544444443 345566776 8899
Q ss_pred CCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCC
Q 013316 340 FNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDC 419 (445)
Q Consensus 340 ~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~ 419 (445)
|.+|+..|+.+|+...|... ..+..++++ +.++... --.|.+|..-.++++|.+-...+...
T Consensus 573 F~pYth~qLq~Ii~~RL~~~------------~~f~~~aie-lvarkVA---avSGDaRraldic~RA~Eia~~~~~~-- 634 (767)
T KOG1514|consen 573 FQPYTHEQLQEIISARLKGL------------DAFENKAIE-LVARKVA---AVSGDARRALDICRRAAEIAEERNVK-- 634 (767)
T ss_pred cCCCCHHHHHHHHHHhhcch------------hhcchhHHH-HHHHHHH---hccccHHHHHHHHHHHHHHhhhhccc--
Confidence 99999999999999988764 233444544 5544441 12456677777888886655555431
Q ss_pred CChhhhhhccHHHHHHHHHHHH
Q 013316 420 LDTDELRTITLEDLEAGLKLLL 441 (445)
Q Consensus 420 ~~~~~~~~i~~~d~~~a~~~~~ 441 (445)
.+......|+.-||.+|+.++.
T Consensus 635 ~k~~~~q~v~~~~v~~Ai~em~ 656 (767)
T KOG1514|consen 635 GKLAVSQLVGILHVMEAINEML 656 (767)
T ss_pred ccccccceeehHHHHHHHHHHh
Confidence 1334455789999999998754
No 302
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=1.9e-09 Score=102.24 Aligned_cols=134 Identities=18% Similarity=0.140 Sum_probs=89.5
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC-C-----------------CCeEEeeccccccc-------------
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-T-----------------DRVTEVQRTDLVGE------------- 252 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~-~-----------------~~~~~~~~~~l~~~------------- 252 (445)
+.+..+||+||+|+||+++|+.+|+.+.+..... . ..+..+.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 4567899999999999999999999997643211 0 01222211100000
Q ss_pred -ccC--------C-chhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEE
Q 013316 253 -FVG--------H-TGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIF 313 (445)
Q Consensus 253 -~~g--------~-~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~ 313 (445)
--| . .-..++.+.+.. ...|++||++|++.. .+.|.||+.+|+ ...++|+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~t~fiL 167 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-----------AAANALLKTLEEPPPGTVFLL 167 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH-----------HHHHHHHHHhcCCCcCcEEEE
Confidence 000 0 123444444332 347999999999987 888999999997 4566666
Q ss_pred ecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHH
Q 013316 314 AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI 354 (445)
Q Consensus 314 a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~ 354 (445)
.|++.... -|.++||+ +.+.|++|+.+++.+.+..
T Consensus 168 ~t~~~~~L-----LpTI~SRc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 168 VSARIDRL-----LPTILSRC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred EECChhhC-----cHHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence 65543322 68899999 9999999999999888765
No 303
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=3.1e-09 Score=100.13 Aligned_cols=131 Identities=10% Similarity=0.123 Sum_probs=88.9
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC-----------------eEEeecccccccccCCchhHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR-----------------VTEVQRTDLVGEFVGHTGPKTRRRIK 266 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~g~~~~~~~~~~~ 266 (445)
..+...||+||+|+||+++|+.+|+.+.+...-...+ |..+.+. .++.+ .-..++++.+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~--~~~~I--~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI--DNKDI--GVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc--cCCCC--CHHHHHHHHH
Confidence 3456788999999999999999999987633211111 1112110 01111 2334555443
Q ss_pred Hc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccc
Q 013316 267 EA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKF 337 (445)
Q Consensus 267 ~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~ 337 (445)
.. ...|++||++|++.. .+.|.||+.+++ ...++|+.++.... .-|.++||+ +.
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~~-----------~AaNaLLKtLEEPp~~~~fiL~t~~~~~-----llpTI~SRC-~~ 160 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLTE-----------AAANALLKTLEEPRPNTYFLLQADLSAA-----LLPTIYSRC-QT 160 (325)
T ss_pred HHhhccccCCceEEEEechhhhCH-----------HHHHHHHHHhcCCCCCeEEEEEECChHh-----CchHHHhhc-eE
Confidence 32 337999999999987 889999999997 45666665544322 258899999 99
Q ss_pred eeCCCCCHHHHHHHHHHH
Q 013316 338 FHFNDFNSEELAKILHIK 355 (445)
Q Consensus 338 i~~~~~~~~~~~~il~~~ 355 (445)
+.|++|+.++..+.+...
T Consensus 161 ~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 999999999998877654
No 304
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.03 E-value=1.5e-09 Score=96.92 Aligned_cols=78 Identities=21% Similarity=0.317 Sum_probs=55.2
Q ss_pred CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-cEEEEEecCchh--------HHHHHhhCcccccccccceeC
Q 013316 270 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEP--------MKRVIASNEGFCRRVTKFFHF 340 (445)
Q Consensus 270 ~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~i~a~~~~~--------~~~~~~~~~~l~~R~~~~i~~ 340 (445)
+|||||||+|.|-- +...-|-+.+++. .-++|+|+++.. ...+.-+.+.|++|+ ..|..
T Consensus 297 PGVLFIDEVhMLDi-----------EcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl-~Iirt 364 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDI-----------ECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRL-LIIRT 364 (456)
T ss_pred CcceEeeehhhhhh-----------HHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhhe-eEEee
Confidence 48999999988754 6666777777762 335555554321 112222347788898 88899
Q ss_pred CCCCHHHHHHHHHHHHhcc
Q 013316 341 NDFNSEELAKILHIKMNNQ 359 (445)
Q Consensus 341 ~~~~~~~~~~il~~~l~~~ 359 (445)
-+|+.+++++|++......
T Consensus 365 ~~y~~~e~r~Ii~~Ra~~E 383 (456)
T KOG1942|consen 365 LPYDEEEIRQIIKIRAQVE 383 (456)
T ss_pred ccCCHHHHHHHHHHHHhhh
Confidence 9999999999999887754
No 305
>PRK08116 hypothetical protein; Validated
Probab=99.03 E-value=5.3e-09 Score=96.70 Aligned_cols=127 Identities=16% Similarity=0.148 Sum_probs=74.8
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccccc----CCchhHHHHHHHHc-cCcEEEEcCccc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFV----GHTGPKTRRRIKEA-EGGILFVDEAYR 280 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~----g~~~~~~~~~~~~a-~~~il~lDEid~ 280 (445)
..+++|+|+||||||.+|.+|++.+...+. +++.++.+++...+. +.......++++.. ...+|+|||+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~----~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~ 189 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGV----PVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGA 189 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCC----eEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccC
Confidence 357999999999999999999999876433 777788777655432 11111222333322 346999999954
Q ss_pred cccCCCCCCchhHHHHHHHHHhhccC---CcEEEEEecCchhHHHHHhhCccccccc---ccceeCCCCCH
Q 013316 281 LIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRV---TKFFHFNDFNS 345 (445)
Q Consensus 281 l~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~i~a~~~~~~~~~~~~~~~l~~R~---~~~i~~~~~~~ 345 (445)
... .+ ..+..|...++. ....+|++|+..+.......++.+.+|+ ...|.|+.++.
T Consensus 190 e~~------t~---~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 190 ERD------TE---WAREKVYNIIDSRYRKGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred CCC------CH---HHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 322 12 233445554442 2233444555444332222367788885 34567776663
No 306
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=5.3e-09 Score=98.36 Aligned_cols=131 Identities=16% Similarity=0.140 Sum_probs=85.4
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC--------------CeEEeecccccccccCC------chhHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD--------------RVTEVQRTDLVGEFVGH------TGPKTRR 263 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~g~------~~~~~~~ 263 (445)
.-+..+||+||+|+||+++|+.+|+.+.+......+ .+..+.. ....-|. .-..++.
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~---~p~~~~~k~~~~I~idqIR~ 100 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSF---IPNRTGDKLRTEIVIEQVRE 100 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEec---CCCcccccccccccHHHHHH
Confidence 345569999999999999999999988664311100 1111100 0000010 1223444
Q ss_pred HHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCccccccc
Q 013316 264 RIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRV 334 (445)
Q Consensus 264 ~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~ 334 (445)
+.+.. ...|++||++|.+.. .+.|.||+.+|+ ...++|+.++.... + -|.++|||
T Consensus 101 l~~~~~~~p~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~~~fiL~~~~~~~--l---LpTIrSRC 164 (319)
T PRK08769 101 ISQKLALTPQYGIAQVVIVDPADAINR-----------AACNALLKTLEEPSPGRYLWLISAQPAR--L---PATIRSRC 164 (319)
T ss_pred HHHHHhhCcccCCcEEEEeccHhhhCH-----------HHHHHHHHHhhCCCCCCeEEEEECChhh--C---chHHHhhh
Confidence 44322 237999999999986 788999999997 35555555443222 2 58899999
Q ss_pred ccceeCCCCCHHHHHHHHHH
Q 013316 335 TKFFHFNDFNSEELAKILHI 354 (445)
Q Consensus 335 ~~~i~~~~~~~~~~~~il~~ 354 (445)
..+.|++|+.++..+.+..
T Consensus 165 -q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 165 -QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred -eEeeCCCcCHHHHHHHHHH
Confidence 9999999999988777653
No 307
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.02 E-value=1.4e-09 Score=90.49 Aligned_cols=124 Identities=23% Similarity=0.258 Sum_probs=72.5
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc--------------ccCCchhHHHHHHHHccC-
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE--------------FVGHTGPKTRRRIKEAEG- 270 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~--------------~~g~~~~~~~~~~~~a~~- 270 (445)
..+++|+||||||||++++.++..+.... ..++.++++..... ............+..++.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG----GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC----CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 45899999999999999999999887633 24667776653321 112233344455555543
Q ss_pred --cEEEEcCccccccCCCCCCchhHHHHHH-----HHHhhccCCcEEEEEecCchhHHHHHhhCcccccccccceeCCCC
Q 013316 271 --GILFVDEAYRLIPMQKADDKDYGIEALE-----EIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDF 343 (445)
Q Consensus 271 --~il~lDEid~l~~~~~~~~~~~~~~~~~-----~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~ 343 (445)
.+|||||++.+...... ..... ............+|++++..... ....++.|++..+.++.+
T Consensus 78 ~~~viiiDei~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 78 KPDVLILDEITSLLDAEQE------ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL----GPALLRRRFDRRIVLLLI 147 (148)
T ss_pred CCCEEEEECCcccCCHHHH------HHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccC----chhhhhhccceEEEecCC
Confidence 99999999999863320 00000 11222223556677776641110 123344477777766544
No 308
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=3.7e-09 Score=100.21 Aligned_cols=133 Identities=20% Similarity=0.219 Sum_probs=86.9
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC------------------CCCeEEeecccccccccCC-----chhH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP------------------TDRVTEVQRTDLVGEFVGH-----TGPK 260 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~------------------~~~~~~~~~~~l~~~~~g~-----~~~~ 260 (445)
+.+..+||+||+|+|||++|+.+|+.+.+..... ...|+.+.+..-. .--|. .-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 4566799999999999999999999986532110 1224444332100 00010 1234
Q ss_pred HHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC--cEEEEEecCchhHHHHHhhCcccc
Q 013316 261 TRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--KVVVIFAGYSEPMKRVIASNEGFC 331 (445)
Q Consensus 261 ~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~i~a~~~~~~~~~~~~~~~l~ 331 (445)
++.+.+.+ ...|++||+++.+.+ ..++.|++.+++. ..++|+++..... + -|.++
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~-----------~a~naLLk~LEep~~~~~~Ilvth~~~~--l---l~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNL-----------QAANSLLKVLEEPPPQVVFLLVSHAADK--V---LPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCH-----------HHHHHHHHHHHhCcCCCEEEEEeCChHh--C---hHHHH
Confidence 45554433 347999999988877 7788888888863 4555555444332 1 57789
Q ss_pred cccccceeCCCCCHHHHHHHHHH
Q 013316 332 RRVTKFFHFNDFNSEELAKILHI 354 (445)
Q Consensus 332 ~R~~~~i~~~~~~~~~~~~il~~ 354 (445)
+|+ ..+.|++|+.++..+.+..
T Consensus 162 SRc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 SRC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHh-hhhcCCCCCHHHHHHHHHh
Confidence 998 9999999999998777653
No 309
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.99 E-value=1.6e-09 Score=103.33 Aligned_cols=204 Identities=19% Similarity=0.269 Sum_probs=114.3
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc--------------ccccccCCchhHHHHHHHHccC
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD--------------LVGEFVGHTGPKTRRRIKEAEG 270 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~--------------l~~~~~g~~~~~~~~~~~~a~~ 270 (445)
...|+||.|.||||||.+.+.+++...+ -+.++... ..++|+-+. ..+-.|.+
T Consensus 56 ~~ihiLlvGdpg~gKS~ll~~~~~~~pr--------~v~~~g~~~s~~gLta~~~~d~~~~~~~lea-----Galvlad~ 122 (331)
T PF00493_consen 56 GNIHILLVGDPGTGKSQLLKYVAKLAPR--------SVYTSGKGSSAAGLTASVSRDPVTGEWVLEA-----GALVLADG 122 (331)
T ss_dssp -S--EEEECSCHHCHHHHHHCCCCT-SS--------EEEEECCGSTCCCCCEEECCCGGTSSECEEE------HHHHCTT
T ss_pred cccceeeccchhhhHHHHHHHHHhhCCc--------eEEECCCCcccCCccceeccccccceeEEeC-----CchhcccC
Confidence 4569999999999999999988766532 11122111 111111111 35667899
Q ss_pred cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc---------------EEEEEecCchhHH--------HHHhhC
Q 013316 271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMK--------RVIASN 327 (445)
Q Consensus 271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------~~~i~a~~~~~~~--------~~~~~~ 327 (445)
||.+|||+|.+.. +....|.+.|+.+. ..|++++++..-. .-+...
T Consensus 123 GiccIDe~dk~~~-----------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~ 191 (331)
T PF00493_consen 123 GICCIDEFDKMKE-----------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLP 191 (331)
T ss_dssp SEEEECTTTT--C-----------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-
T ss_pred ceeeecccccccc-----------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccc
Confidence 9999999999876 55678888888743 2566665544311 011235
Q ss_pred ccccccccccee-CCCCCHHHHHHHHHHHHhcccccc-------cc---------------cc-cccCCcccHHHHHHHH
Q 013316 328 EGFCRRVTKFFH-FNDFNSEELAKILHIKMNNQTEDS-------LL---------------YG-FKLHSSCSMDAIAALI 383 (445)
Q Consensus 328 ~~l~~R~~~~i~-~~~~~~~~~~~il~~~l~~~~~~~-------~~---------------~~-~~~~~~~~~~~l~~~~ 383 (445)
++|++|||..+. ...++.+.=..+.++.++...... .. +. -.+.|.+++++...+.
T Consensus 192 ~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~ 271 (331)
T PF00493_consen 192 PPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELII 271 (331)
T ss_dssp CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHH
T ss_pred hhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 889999997764 566776666667777666553321 00 00 1456677777755444
Q ss_pred HHHHHH-------hhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316 384 EKETTE-------KQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 441 (445)
Q Consensus 384 ~~~~~~-------~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 441 (445)
..|..- ....+...|.++.++.-+...+..++. ..|+.+|+..|+.-+.
T Consensus 272 ~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr---------~~V~~~Dv~~Ai~L~~ 327 (331)
T PF00493_consen 272 NYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLR---------DEVTEEDVEEAIRLFE 327 (331)
T ss_dssp HHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTS---------SECSHHHHHHHHHHHH
T ss_pred HHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhcc---------CceeHHHHHHHHHHHH
Confidence 444311 112356688999998877655555442 2799999999998654
No 310
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.98 E-value=2.2e-09 Score=108.88 Aligned_cols=200 Identities=18% Similarity=0.163 Sum_probs=121.6
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCc--------hh--HHHHHHHHccCcEEEE
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT--------GP--KTRRRIKEAEGGILFV 275 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~--------~~--~~~~~~~~a~~~il~l 275 (445)
..+|+|.|++||+|++++|+++..+.. ..||+.+..+.-...++|.. +. --..++..|.+|||||
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~-----~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~l 99 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPA-----GTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVL 99 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCC-----CCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEe
Confidence 368999999999999999999998753 23787777776556666642 01 1134678889999999
Q ss_pred cCccccccCCCCCCchhHHHHHHHHHhhccCCc---------------EEEEEecCchhHHHHHhhCcccccccccceeC
Q 013316 276 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHF 340 (445)
Q Consensus 276 DEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~ 340 (445)
||+..+.+ .+++.|++.|+.+. +++|++ .+.........+++++||+..+.+
T Consensus 100 De~n~~~~-----------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat--~~~~~~~~~L~~~lLDRf~l~v~v 166 (584)
T PRK13406 100 AMAERLEP-----------GTAARLAAALDTGEVRLERDGLALRLPARFGLVAL--DEGAEEDERAPAALADRLAFHLDL 166 (584)
T ss_pred cCcccCCH-----------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEec--CCChhcccCCCHHhHhheEEEEEc
Confidence 99966655 89999999999864 344554 222222233467899999999999
Q ss_pred CCCCHHHHHHHH--HHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccC
Q 013316 341 NDFNSEELAKIL--HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFD 418 (445)
Q Consensus 341 ~~~~~~~~~~il--~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~ 418 (445)
+.++..+..+-. ...+......+. ...++.+.+..++.-.... . .-..|-...++.-|....++
T Consensus 167 ~~~~~~~~~~~~~~~~~I~~AR~rl~------~v~v~~~~l~~i~~~~~~~--g-v~S~Ra~i~llraARa~AaL----- 232 (584)
T PRK13406 167 DGLALRDAREIPIDADDIAAARARLP------AVGPPPEAIAALCAAAAAL--G-IASLRAPLLALRAARAAAAL----- 232 (584)
T ss_pred CCCChHHhcccCCCHHHHHHHHHHHc------cCCCCHHHHHHHHHHHHHh--C-CCCcCHHHHHHHHHHHHHHH-----
Confidence 999866543100 000110000111 2344555555444222210 0 00234444444444222222
Q ss_pred CCChhhhhhccHHHHHHHHHHHH
Q 013316 419 CLDTDELRTITLEDLEAGLKLLL 441 (445)
Q Consensus 419 ~~~~~~~~~i~~~d~~~a~~~~~ 441 (445)
++...|+.+||.+++.-+.
T Consensus 233 ----~Gr~~V~~~dv~~Aa~lvL 251 (584)
T PRK13406 233 ----AGRTAVEEEDLALAARLVL 251 (584)
T ss_pred ----cCCCCCCHHHHHHHHHHHH
Confidence 3445899999999987543
No 311
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=1.5e-08 Score=96.42 Aligned_cols=165 Identities=17% Similarity=0.233 Sum_probs=104.6
Q ss_pred hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 013316 171 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 250 (445)
Q Consensus 171 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~ 250 (445)
+.|.+.-+..+++|+... +....+..+.+.|.||||||.+-..+-....... .....+.++|..+-
T Consensus 152 l~gRe~e~~~v~~F~~~h------------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~--~~~~~v~inc~sl~ 217 (529)
T KOG2227|consen 152 LKGRELEMDIVREFFSLH------------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSS--KSPVTVYINCTSLT 217 (529)
T ss_pred ccchHHHHHHHHHHHHhh------------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhc--ccceeEEEeecccc
Confidence 788888888888876544 3456778899999999999988765554443321 12245778887532
Q ss_pred c----------cc----cCC-chhHHHHHHHHc----c-CcEEEEcCccccccCCCCCCchhHHHHHHHHHhh--ccCCc
Q 013316 251 G----------EF----VGH-TGPKTRRRIKEA----E-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV--MDGGK 308 (445)
Q Consensus 251 ~----------~~----~g~-~~~~~~~~~~~a----~-~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~--~~~~~ 308 (445)
. .+ .|. ++......|+.- . --++++||+|.|..+.+ .++-.|..+ +-..+
T Consensus 218 ~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~--------~vLy~lFewp~lp~sr 289 (529)
T KOG2227|consen 218 EASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ--------TVLYTLFEWPKLPNSR 289 (529)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc--------ceeeeehhcccCCcce
Confidence 1 11 121 333333344332 2 36999999999996544 222222211 11244
Q ss_pred EEEEE-ecCchhHHHHHhhCccccccc---ccceeCCCCCHHHHHHHHHHHHhccc
Q 013316 309 VVVIF-AGYSEPMKRVIASNEGFCRRV---TKFFHFNDFNSEELAKILHIKMNNQT 360 (445)
Q Consensus 309 ~~~i~-a~~~~~~~~~~~~~~~l~~R~---~~~i~~~~~~~~~~~~il~~~l~~~~ 360 (445)
+++|+ |+.-+.++++ -|.|..|. +..+.|++|+.+|+.+|+...++...
T Consensus 290 ~iLiGiANslDlTdR~---LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~ 342 (529)
T KOG2227|consen 290 IILIGIANSLDLTDRF---LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES 342 (529)
T ss_pred eeeeeehhhhhHHHHH---hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc
Confidence 55554 6566666665 35555543 58899999999999999999998863
No 312
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=1.1e-09 Score=104.11 Aligned_cols=89 Identities=25% Similarity=0.261 Sum_probs=79.5
Q ss_pred HHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCC
Q 013316 52 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGS 131 (445)
Q Consensus 52 Lh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~ 131 (445)
|.=|+..|.+++|+-.+.. -.|+...+..|-|+||-|+..||.++|++|+++|+++|+.|.+||||| |+|+..++
T Consensus 554 LLDaaLeGEldlVq~~i~e----v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPL-HCAASCNn 628 (752)
T KOG0515|consen 554 LLDAALEGELDLVQRIIYE----VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPL-HCAASCNN 628 (752)
T ss_pred HHhhhhcchHHHHHHHHHh----hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchh-hhhhhcCc
Confidence 4458899999999988753 346777889999999999999999999999999999999999999999 88999999
Q ss_pred hHHHHHHHhhhhhH
Q 013316 132 AKLRELLLWHSEEQ 145 (445)
Q Consensus 132 ~~i~~~ll~~~~~~ 145 (445)
..+++.|.+.|+-.
T Consensus 629 v~~ckqLVe~Gaav 642 (752)
T KOG0515|consen 629 VPMCKQLVESGAAV 642 (752)
T ss_pred hHHHHHHHhccceE
Confidence 99999999988654
No 313
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=8.1e-09 Score=98.30 Aligned_cols=131 Identities=11% Similarity=0.055 Sum_probs=86.6
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC-----------------CCeEEeecccccccccCCchhHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-----------------DRVTEVQRTDLVGEFVGHTGPKTRRRIK 266 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~g~~~~~~~~~~~ 266 (445)
+.+...||+||+|+||+++|+++|+.+-+...... ..+..+.+..- +.. -.-..++.+.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~--I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KSS--LGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-ccc--CCHHHHHHHHH
Confidence 45667889999999999999999999866321111 11111211100 000 02234454443
Q ss_pred Hc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccc
Q 013316 267 EA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKF 337 (445)
Q Consensus 267 ~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~ 337 (445)
.. ...|++||++|++.. ++.|.||+.+|+ ...++|+.+....- .-|.++||+ +.
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~t~fiL~t~~~~~-----lLpTIrSRC-q~ 161 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLTD-----------AAANALLKTLEEPPENTWFFLACREPAR-----LLATLRSRC-RL 161 (334)
T ss_pred HHhhccccCCceEEEEcchHhhCH-----------HHHHHHHHHhcCCCCCeEEEEEECChhh-----ChHHHHhcc-cc
Confidence 32 347999999999987 888999999997 45555555443222 157899999 78
Q ss_pred eeCCCCCHHHHHHHHHH
Q 013316 338 FHFNDFNSEELAKILHI 354 (445)
Q Consensus 338 i~~~~~~~~~~~~il~~ 354 (445)
+.|++|+.++..+.+..
T Consensus 162 ~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 162 HYLAPPPEQYALTWLSR 178 (334)
T ss_pred ccCCCCCHHHHHHHHHH
Confidence 99999999998877653
No 314
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.94 E-value=1e-08 Score=104.23 Aligned_cols=235 Identities=20% Similarity=0.260 Sum_probs=137.3
Q ss_pred HhhhcchHHHHHHHH-HHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 013316 169 SNIVGLHELKIQLRK-WAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 247 (445)
Q Consensus 169 ~~l~g~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~ 247 (445)
..|.|.+.+|..|.= ++..+ .+...-....+...||||.|.||||||.+-+.+++.+.+. -+..-.+|
T Consensus 286 PsIyG~e~VKkAilLqLfgGv-----~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~------vytsgkgs 354 (682)
T COG1241 286 PSIYGHEDVKKAILLQLFGGV-----KKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRG------VYTSGKGS 354 (682)
T ss_pred ccccCcHHHHHHHHHHhcCCC-----cccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCce------EEEccccc
Confidence 347888887766542 11111 1111111112234699999999999999999999877541 11111111
Q ss_pred c---c---------cccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcE------
Q 013316 248 D---L---------VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV------ 309 (445)
Q Consensus 248 ~---l---------~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~------ 309 (445)
. | .++|+=+. ..+-.|.+||..|||+|++.. .....+...|+...+
T Consensus 355 s~~GLTAav~rd~~tge~~Lea-----GALVlAD~Gv~cIDEfdKm~~-----------~dr~aihEaMEQQtIsIaKAG 418 (682)
T COG1241 355 SAAGLTAAVVRDKVTGEWVLEA-----GALVLADGGVCCIDEFDKMNE-----------EDRVAIHEAMEQQTISIAKAG 418 (682)
T ss_pred cccCceeEEEEccCCCeEEEeC-----CEEEEecCCEEEEEeccCCCh-----------HHHHHHHHHHHhcEeeecccc
Confidence 1 1 11111111 133457889999999988865 445677777775332
Q ss_pred ---------EEEEecCchh--------HHHHHhhCcccccccccce-eCCCCCHHHHHHHHHHHHhccccc---------
Q 013316 310 ---------VVIFAGYSEP--------MKRVIASNEGFCRRVTKFF-HFNDFNSEELAKILHIKMNNQTED--------- 362 (445)
Q Consensus 310 ---------~~i~a~~~~~--------~~~~~~~~~~l~~R~~~~i-~~~~~~~~~~~~il~~~l~~~~~~--------- 362 (445)
-+++|.|+.. ...-+...++|++|||..+ ....|+++.=..|.++.+......
T Consensus 419 I~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~ 498 (682)
T COG1241 419 ITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLD 498 (682)
T ss_pred eeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccc
Confidence 2233333221 1122334588999999665 667777766666777666654211
Q ss_pred ------------ccc---cccc-cCCcccHHHHHHHHHHHHHHhhh-----------cccCchhhHHHHHHHHHhhhhhh
Q 013316 363 ------------SLL---YGFK-LHSSCSMDAIAALIEKETTEKQR-----------REMNGGLVDPMLVNARENLDLRL 415 (445)
Q Consensus 363 ------------~~~---~~~~-~~~~~~~~~l~~~~~~~~~~~~~-----------~~~n~r~l~~~~~~~~~~~~~~~ 415 (445)
+.+ |.-. ..|.++.++.+.+...|.+ +| .|..+|+|..++.-+...+..|+
T Consensus 499 ~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~--~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rL 576 (682)
T COG1241 499 GVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVE--MRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRL 576 (682)
T ss_pred cccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHH--hhhccccccccCcccccHHHHHHHHHHHHHHHhhhc
Confidence 111 1111 4477888887766655542 33 24668899999887766555554
Q ss_pred ccCCCChhhhhhccHHHHHHHHHHHH
Q 013316 416 SFDCLDTDELRTITLEDLEAGLKLLL 441 (445)
Q Consensus 416 ~~~~~~~~~~~~i~~~d~~~a~~~~~ 441 (445)
+ ..|+.+|+.+|+.-+.
T Consensus 577 S---------~~V~~eD~~eAi~lv~ 593 (682)
T COG1241 577 S---------DVVEEEDVDEAIRLVD 593 (682)
T ss_pred c---------CCCCHHHHHHHHHHHH
Confidence 2 2699999999998654
No 315
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=1.3e-08 Score=95.73 Aligned_cols=131 Identities=11% Similarity=0.150 Sum_probs=86.9
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC----------------CCCeEEeecccccccccCCchhHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP----------------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE 267 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 267 (445)
..+..+||+||.|+||+++|+.+|+.+-+...-. ...|..+.+.. .++.+ .-..++.+.+.
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHH
Confidence 4566799999999999999999999986643110 00122222110 00001 12334443332
Q ss_pred c-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccce
Q 013316 268 A-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFF 338 (445)
Q Consensus 268 a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i 338 (445)
. ...|++||++|++.. .+.|.||+.+|+ .+.++|+.++..... -|.++||+ +.+
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~t~fiL~t~~~~~l-----LpTI~SRC-q~~ 162 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMNE-----------SASNALLKTLEEPAPNCLFLLVTHNQKRL-----LPTIVSRC-QQW 162 (319)
T ss_pred HhhCcccCCceEEEecchhhhCH-----------HHHHHHHHHhcCCCCCeEEEEEECChhhC-----hHHHHhcc-eeE
Confidence 2 247999999999986 788999999997 445666654442221 57899999 899
Q ss_pred eCCCCCHHHHHHHHHH
Q 013316 339 HFNDFNSEELAKILHI 354 (445)
Q Consensus 339 ~~~~~~~~~~~~il~~ 354 (445)
.|++|+.++..+.+..
T Consensus 163 ~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 163 VVTPPSTAQAMQWLKG 178 (319)
T ss_pred eCCCCCHHHHHHHHHH
Confidence 9999999998877653
No 316
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=9e-09 Score=99.02 Aligned_cols=135 Identities=16% Similarity=0.282 Sum_probs=94.3
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCch----hHHHHHHHHccC---cEEEEcC
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG----PKTRRRIKEAEG---GILFVDE 277 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~----~~~~~~~~~a~~---~il~lDE 277 (445)
+...+||.||||+|||++|-.+|..+.- ||+.+-.+.- .+|.++ ..+.++|+.|-. +||++|+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~F-------PFvKiiSpe~---miG~sEsaKc~~i~k~F~DAYkS~lsiivvDd 606 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSDF-------PFVKIISPED---MIGLSESAKCAHIKKIFEDAYKSPLSIIVVDD 606 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcCC-------CeEEEeChHH---ccCccHHHHHHHHHHHHHHhhcCcceEEEEcc
Confidence 4557999999999999999999988776 8888655432 334433 346788988743 8999999
Q ss_pred ccccccCCCCCCchhHHHHHHHHHhhccC----C-cEEEEEecCchhHHHHHhhCcccccccccceeCCCCCH-HHHHHH
Q 013316 278 AYRLIPMQKADDKDYGIEALEEIMSVMDG----G-KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKI 351 (445)
Q Consensus 278 id~l~~~~~~~~~~~~~~~~~~ll~~~~~----~-~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~-~~~~~i 351 (445)
|++|..--. -++.++.-++..|+-++.. + ++.++++|+...... .-.+...|+..+.+|..+. ++..++
T Consensus 607 iErLiD~vp-IGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~----~m~i~~~F~~~i~Vpnl~~~~~~~~v 681 (744)
T KOG0741|consen 607 IERLLDYVP-IGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ----EMGILDCFSSTIHVPNLTTGEQLLEV 681 (744)
T ss_pred hhhhhcccc-cCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH----HcCHHHhhhheeecCccCchHHHHHH
Confidence 999974211 1244555666677766653 3 445555544443332 4567889999999999985 787777
Q ss_pred HHH
Q 013316 352 LHI 354 (445)
Q Consensus 352 l~~ 354 (445)
++.
T Consensus 682 l~~ 684 (744)
T KOG0741|consen 682 LEE 684 (744)
T ss_pred HHH
Confidence 764
No 317
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=98.93 E-value=6.9e-10 Score=113.73 Aligned_cols=136 Identities=23% Similarity=0.291 Sum_probs=121.1
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc-ccCCC
Q 013316 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA-QNMYG 85 (445)
Q Consensus 7 ~~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~-~d~~g 85 (445)
+-......|+|-.||..||.+.++.++ ..|.++..+|. .|.+||.+|+..||..+|+.|++. .++++. .|..+
T Consensus 751 ~~Te~n~~t~LT~acaggh~e~vellv-~rganiehrdk-kgf~plImaatagh~tvV~~llk~----ha~veaQsdrtk 824 (2131)
T KOG4369|consen 751 PLTEPNIKTNLTSACAGGHREEVELLV-VRGANIEHRDK-KGFVPLIMAATAGHITVVQDLLKA----HADVEAQSDRTK 824 (2131)
T ss_pred cccCccccccccccccCccHHHHHHHH-Hhccccccccc-ccchhhhhhcccCchHHHHHHHhh----hhhhhhhccccc
Confidence 334456789999999999999998666 56899999997 799999999999999999999985 678865 57889
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhh
Q 013316 86 ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 149 (445)
Q Consensus 86 ~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~ 149 (445)
.|+|.+||..|..++|++||.+|++-..++-...||| .++...++.+++.+|+++|...+-|.
T Consensus 825 dt~lSlacsggr~~vvelLl~~gankehrnvsDytPl-sla~Sggy~~iI~~llS~GseInSrt 887 (2131)
T KOG4369|consen 825 DTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPL-SLARSGGYTKIIHALLSSGSEINSRT 887 (2131)
T ss_pred CceEEEecCCCcchHHHHHHHhhccccccchhhcCch-hhhcCcchHHHHHHHhhccccccccc
Confidence 9999999999999999999999999999999999999 78888999999999999998776664
No 318
>PRK12377 putative replication protein; Provisional
Probab=98.88 E-value=1.3e-08 Score=92.42 Aligned_cols=73 Identities=26% Similarity=0.368 Sum_probs=49.4
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCC--chhHHHHHHHHc-cCcEEEEcCccccc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH--TGPKTRRRIKEA-EGGILFVDEAYRLI 282 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~a-~~~il~lDEid~l~ 282 (445)
..+++|+||||||||.+|.+|++.+...+. .+..++.+++...+-.. ......+.++.. ...+|+|||+....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~----~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGR----SVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQR 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCC----CeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCC
Confidence 358999999999999999999999976443 56777777765543210 011112334333 44799999996654
No 319
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.88 E-value=7.9e-09 Score=91.49 Aligned_cols=124 Identities=22% Similarity=0.236 Sum_probs=104.0
Q ss_pred CChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcc-cccCCCChhhhhh
Q 013316 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEA-KANEGKTPLDHLS 126 (445)
Q Consensus 48 g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~-~~~~g~tpl~~~a 126 (445)
-..||.-+...|..+-...||+- --++|.+|..|.+||..|+..|+.++++.|++.|+|+|. ++..+.||| +.|
T Consensus 12 ~~~~Lle~i~Kndt~~a~~LLs~----vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpL-mFA 86 (396)
T KOG1710|consen 12 PKSPLLEAIDKNDTEAALALLST----VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPL-MFA 86 (396)
T ss_pred hhhHHHHHHccCcHHHHHHHHHH----hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHH-HHH
Confidence 45788888888999988888872 345899999999999999999999999999999999996 467899999 777
Q ss_pred cCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHHhHHHHHHHHHhhhcchHHHHHHHHHHH
Q 013316 127 NGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAK 186 (445)
Q Consensus 127 ~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~g~~~~~~~l~~~~~ 186 (445)
+-.|+.++.++|+..|+.+...+..+.+. ..+..++|+.+....|...+.
T Consensus 87 ALSGn~dvcrllldaGa~~~~vNsvgrTA----------aqmAAFVG~H~CV~iINN~~t 136 (396)
T KOG1710|consen 87 ALSGNQDVCRLLLDAGARMYLVNSVGRTA----------AQMAAFVGHHECVAIINNHIT 136 (396)
T ss_pred HHcCCchHHHHHHhccCccccccchhhhH----------HHHHHHhcchHHHHHHhcccc
Confidence 77889999999999999887777655332 356679999999888877543
No 320
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.6e-08 Score=103.57 Aligned_cols=150 Identities=21% Similarity=0.241 Sum_probs=116.8
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcC---CCCCCCeEEeeccccc--ccccCCchhHHHHHHHHc----cCcEEEE
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTEVQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFV 275 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~---~~~~~~~~~~~~~~l~--~~~~g~~~~~~~~~~~~a----~~~il~l 275 (445)
...+-+|.|+||+|||.++.-+++....-. .+....++.++...+. .++.|+.+.++..+++++ .+.||||
T Consensus 207 tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfi 286 (898)
T KOG1051|consen 207 TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFL 286 (898)
T ss_pred CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 346889999999999999999999886522 2334456666665443 336677788888888754 3479999
Q ss_pred cCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHH
Q 013316 276 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIK 355 (445)
Q Consensus 276 DEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 355 (445)
||++-+...+.. +....+.+.|...+..+.+.+|+|||...+...+..+|+|.+|| ..+.++.|+.++...|+...
T Consensus 287 gelh~lvg~g~~---~~~~d~~nlLkp~L~rg~l~~IGatT~e~Y~k~iekdPalErrw-~l~~v~~pS~~~~~~iL~~l 362 (898)
T KOG1051|consen 287 GELHWLVGSGSN---YGAIDAANLLKPLLARGGLWCIGATTLETYRKCIEKDPALERRW-QLVLVPIPSVENLSLILPGL 362 (898)
T ss_pred cceeeeecCCCc---chHHHHHHhhHHHHhcCCeEEEecccHHHHHHHHhhCcchhhCc-ceeEeccCcccchhhhhhhh
Confidence 999999986553 22556777788888888899999999999999999999999999 88889999988888888764
Q ss_pred Hhc
Q 013316 356 MNN 358 (445)
Q Consensus 356 l~~ 358 (445)
-.+
T Consensus 363 ~~~ 365 (898)
T KOG1051|consen 363 SER 365 (898)
T ss_pred hhh
Confidence 433
No 321
>PF13173 AAA_14: AAA domain
Probab=98.86 E-value=1.6e-08 Score=82.90 Aligned_cols=120 Identities=19% Similarity=0.263 Sum_probs=73.9
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc---cCcEEEEcCcccccc
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIP 283 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~ 283 (445)
..++++||.|||||++++.+++.+. ....++.++..+......... . +.+.+.+. ...+||||||+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-----~~~~~~yi~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~iDEiq~~~- 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-----PPENILYINFDDPRDRRLADP-D-LLEYFLELIKPGKKYIFIDEIQYLP- 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-----ccccceeeccCCHHHHHHhhh-h-hHHHHHHhhccCCcEEEEehhhhhc-
Confidence 4688999999999999999998775 122677777766432110000 0 22333222 56899999998774
Q ss_pred CCCCCCchhHHHHHHHHHhhccCC-cEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHH
Q 013316 284 MQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEE 347 (445)
Q Consensus 284 ~~~~~~~~~~~~~~~~ll~~~~~~-~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~ 347 (445)
.....+....+.+ ++.+|++++......- .....+..|. ..+++.+++-.|
T Consensus 75 -----------~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~-~~~~~l~gr~-~~~~l~Plsf~E 126 (128)
T PF13173_consen 75 -----------DWEDALKFLVDNGPNIKIILTGSSSSLLSK-DIAESLAGRV-IEIELYPLSFRE 126 (128)
T ss_pred -----------cHHHHHHHHHHhccCceEEEEccchHHHhh-cccccCCCeE-EEEEECCCCHHH
Confidence 2333333444443 5666666665444321 2346677787 578888888666
No 322
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.84 E-value=2.3e-08 Score=90.59 Aligned_cols=73 Identities=21% Similarity=0.325 Sum_probs=50.5
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccC---CchhHHHHHHHHc-cCcEEEEcCcccc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG---HTGPKTRRRIKEA-EGGILFVDEAYRL 281 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g---~~~~~~~~~~~~a-~~~il~lDEid~l 281 (445)
..+++|+|+||||||++|.+|+..+...+. .+..++.+++...+.+ .......++++.. ...+|+|||++..
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~----~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~ 174 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGK----SVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQ 174 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCC----eEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCC
Confidence 358999999999999999999999876443 6777777777654322 1111122333333 4579999999776
Q ss_pred c
Q 013316 282 I 282 (445)
Q Consensus 282 ~ 282 (445)
.
T Consensus 175 ~ 175 (244)
T PRK07952 175 T 175 (244)
T ss_pred C
Confidence 5
No 323
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=98.81 E-value=3.1e-09 Score=109.05 Aligned_cols=140 Identities=21% Similarity=0.274 Sum_probs=121.5
Q ss_pred CccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316 3 KNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (445)
Q Consensus 3 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~ 81 (445)
+|++.-.++ .|.+||..|+..||..+|..||.. .+++....+..+.|+|.+||..|.+++|++||.. |++-..+
T Consensus 779 rganiehrdkkgf~plImaatagh~tvV~~llk~-ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~----gankehr 853 (2131)
T KOG4369|consen 779 RGANIEHRDKKGFVPLIMAATAGHITVVQDLLKA-HADVEAQSDRTKDTMLSLACSGGRTRVVELLLNA----GANKEHR 853 (2131)
T ss_pred hcccccccccccchhhhhhcccCchHHHHHHHhh-hhhhhhhcccccCceEEEecCCCcchHHHHHHHh----hcccccc
Confidence 455555555 699999999999999999888865 5677777666789999999999999999999995 7777777
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccc--cCCCChhhhhhcCCCChHHHHHHHhhhhhHHhh
Q 013316 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA--NEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 148 (445)
Q Consensus 82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~--~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~ 148 (445)
+-...|||.+|...|..+++.+|+.+|+.|+.+. +.|-.|| .++..+++.....+|+..+.+.+..
T Consensus 854 nvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPL-mlatmngh~~at~~ll~~gsdiNaq 921 (2131)
T KOG4369|consen 854 NVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPL-MLATMNGHQAATLSLLQPGSDINAQ 921 (2131)
T ss_pred chhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchh-hhhhhccccHHHHHHhcccchhccc
Confidence 8888999999999999999999999999998764 6789999 9999999999999999998876654
No 324
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.77 E-value=6.4e-09 Score=97.90 Aligned_cols=89 Identities=22% Similarity=0.234 Sum_probs=49.4
Q ss_pred CChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHh-cCCCCcccccCCCChhhhhh
Q 013316 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANEGKTPLDHLS 126 (445)
Q Consensus 48 g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~~a 126 (445)
+.-++.+|+..|++..++-+.- .|.|++.+|.+.+|+||+||..|+.+++++|++ .+.+++.+|.||+||| --|
T Consensus 506 ~~i~~~~aa~~GD~~alrRf~l----~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPl-DdA 580 (622)
T KOG0506|consen 506 TVINVMYAAKNGDLSALRRFAL----QGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPL-DDA 580 (622)
T ss_pred chhhhhhhhhcCCHHHHHHHHH----hcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcc-hHh
Confidence 3445555666665555443322 155555666666666666666666666666654 4555566666666666 345
Q ss_pred cCCCChHHHHHHHhh
Q 013316 127 NGPGSAKLRELLLWH 141 (445)
Q Consensus 127 ~~~~~~~i~~~ll~~ 141 (445)
...++.+++++|.+.
T Consensus 581 ~~F~h~~v~k~L~~~ 595 (622)
T KOG0506|consen 581 KHFKHKEVVKLLEEA 595 (622)
T ss_pred HhcCcHHHHHHHHHH
Confidence 555555665555443
No 325
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.75 E-value=2e-07 Score=84.75 Aligned_cols=150 Identities=17% Similarity=0.247 Sum_probs=75.6
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE----eecc---cc-------------ccc-ccC--------
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE----VQRT---DL-------------VGE-FVG-------- 255 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~----~~~~---~l-------------~~~-~~g-------- 255 (445)
+...++++||.|+|||++.+.+...+...+.. ..++. ...+ .+ .+. ..+
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELKEKGYK--VVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISK 96 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT--EEC--CCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEEC
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCc--EEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhh
Confidence 46789999999999999999999877331110 00000 0000 00 000 000
Q ss_pred ----CchhHHHHHHHHc----cCcEEEEcCccccc-cCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHH-HHHh
Q 013316 256 ----HTGPKTRRRIKEA----EGGILFVDEAYRLI-PMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMK-RVIA 325 (445)
Q Consensus 256 ----~~~~~~~~~~~~a----~~~il~lDEid~l~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~-~~~~ 325 (445)
.....+..+++.. ...||+|||++.+. .... ........++.+-.......+.+|++++...+. .+..
T Consensus 97 ~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~ 174 (234)
T PF01637_consen 97 DLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE--DKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLD 174 (234)
T ss_dssp TS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT--THHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-
T ss_pred cchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc--hHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhc
Confidence 0122233333222 34899999999999 3221 122222333333332334556555655544333 3344
Q ss_pred hCcccccccccceeCCCCCHHHHHHHHHHHHhcc
Q 013316 326 SNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 359 (445)
Q Consensus 326 ~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~ 359 (445)
..+++..|+.. +.+++++.++..+++.....+.
T Consensus 175 ~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~ 207 (234)
T PF01637_consen 175 DKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL 207 (234)
T ss_dssp TTSTTTT---E-EEE----HHHHHHHHHHHHHCC
T ss_pred ccCccccccce-EEEeeCCHHHHHHHHHHHHHHh
Confidence 56778888866 9999999999999999877653
No 326
>PF13606 Ank_3: Ankyrin repeat
Probab=98.74 E-value=1.4e-08 Score=59.62 Aligned_cols=29 Identities=55% Similarity=0.785 Sum_probs=19.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCc
Q 013316 84 YGETPLHMAAKNGCNEAAKLLLAHGAFIE 112 (445)
Q Consensus 84 ~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~ 112 (445)
+|+||||+|+..|+.+++++|+++|+++|
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 36666666666666666666666666665
No 327
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.73 E-value=1.4e-07 Score=89.41 Aligned_cols=124 Identities=16% Similarity=0.252 Sum_probs=70.8
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccC---CchhHHHHHHHHc-cCcEEEEcCccccc
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG---HTGPKTRRRIKEA-EGGILFVDEAYRLI 282 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g---~~~~~~~~~~~~a-~~~il~lDEid~l~ 282 (445)
.+++|+||||||||.+|.+||+++-..+. .++.++..++...+.. .........++.. .--+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~----~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~ 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGK----SVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEK 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCC----eEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCC
Confidence 68999999999999999999999876443 6777777776554321 1111111113332 23699999997664
Q ss_pred cCCCCCCchhHHHHHHHHHhhcc----CCcEEEEEecCchhHHHHHhhCcccccccc---cceeCCCCC
Q 013316 283 PMQKADDKDYGIEALEEIMSVMD----GGKVVVIFAGYSEPMKRVIASNEGFCRRVT---KFFHFNDFN 344 (445)
Q Consensus 283 ~~~~~~~~~~~~~~~~~ll~~~~----~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~---~~i~~~~~~ 344 (445)
. .+. .++.|...++ .++-++| +|+..+.......++.+.+|+- ..+.|...+
T Consensus 260 ~------t~~---~~~~Lf~iin~R~~~~k~tIi-TSNl~~~el~~~~~eri~SRL~~~~~~i~~~G~d 318 (329)
T PRK06835 260 I------TEF---SKSELFNLINKRLLRQKKMII-STNLSLEELLKTYSERISSRLLGNFTLLKFYGED 318 (329)
T ss_pred C------CHH---HHHHHHHHHHHHHHCCCCEEE-ECCCCHHHHHHHHhHHHHHHHHcCCEEEEecCcC
Confidence 3 222 2233444443 3444444 4443332221223566777762 334554433
No 328
>PRK08181 transposase; Validated
Probab=98.71 E-value=9.8e-08 Score=87.82 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=51.0
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccC-CchhHHHHHHHHc-cCcEEEEcCcccccc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG-HTGPKTRRRIKEA-EGGILFVDEAYRLIP 283 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~~a-~~~il~lDEid~l~~ 283 (445)
..+++|+||||||||.+|.++++.+...+. .++.++.+++...+.. .......+.++.. ..-+|+|||++.+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~----~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGW----RVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTK 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCC----ceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccC
Confidence 458999999999999999999998866443 5667777776655321 1112223334332 447999999987765
No 329
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.68 E-value=4.6e-07 Score=81.57 Aligned_cols=133 Identities=17% Similarity=0.214 Sum_probs=75.6
Q ss_pred CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHH-------HHHhhCcccccccccceeCC
Q 013316 270 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMK-------RVIASNEGFCRRVTKFFHFN 341 (445)
Q Consensus 270 ~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~-------~~~~~~~~l~~R~~~~i~~~ 341 (445)
+|||||||+|.|-- +...-|-+.+++ -..++|+||+.-... .+.-+.-.|+.|+ ..|...
T Consensus 289 pGVLFIDEvHMLDI-----------EcFsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~-lII~t~ 356 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDI-----------ECFSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRM-LIISTQ 356 (454)
T ss_pred cceEEEeeehhhhh-----------HHHHHHHHHhhhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhh-heeecc
Confidence 48899999877753 444445555554 334555555433211 0101113366676 778999
Q ss_pred CCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCC
Q 013316 342 DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLD 421 (445)
Q Consensus 342 ~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~ 421 (445)
+|+.+|+.+||+..+.+.. ....++++.-+..-... -..|...+++..+...+..|-
T Consensus 357 py~~~d~~~IL~iRc~EEd-----------v~m~~~A~d~Lt~i~~~------tsLRYai~Lit~a~~~~~krk------ 413 (454)
T KOG2680|consen 357 PYTEEDIKKILRIRCQEED-----------VEMNPDALDLLTKIGEA------TSLRYAIHLITAASLVCLKRK------ 413 (454)
T ss_pred cCcHHHHHHHHHhhhhhhc-----------cccCHHHHHHHHHhhhh------hhHHHHHHHHHHHHHHHHHhc------
Confidence 9999999999999988752 34455676644432222 224444555554422222221
Q ss_pred hhhhhhccHHHHHHHHHHH
Q 013316 422 TDELRTITLEDLEAGLKLL 440 (445)
Q Consensus 422 ~~~~~~i~~~d~~~a~~~~ 440 (445)
-..+..+|++.+..-|
T Consensus 414 ---~~~v~~~di~r~y~LF 429 (454)
T KOG2680|consen 414 ---GKVVEVDDIERVYRLF 429 (454)
T ss_pred ---CceeehhHHHHHHHHH
Confidence 1257777888777644
No 330
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.68 E-value=3.8e-07 Score=90.62 Aligned_cols=208 Identities=19% Similarity=0.259 Sum_probs=110.9
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccc--cccC---CchhHH--HHHHHHccCcEEEEcC
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG--EFVG---HTGPKT--RRRIKEAEGGILFVDE 277 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~--~~~g---~~~~~~--~~~~~~a~~~il~lDE 277 (445)
...||||+|.||||||-+.+.+|+.+.+ ++-.++ ..++-++ .|+- ++.+-+ ..++-.+.+||=.|||
T Consensus 461 ~~INILL~GDPGtsKSqlLqyv~~l~pR-g~yTSG-----kGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDE 534 (804)
T KOG0478|consen 461 GDINILLVGDPGTSKSQLLQYCHRLLPR-GVYTSG-----KGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDE 534 (804)
T ss_pred ccceEEEecCCCcCHHHHHHHHHHhCCc-ceeecC-----CccchhcceeeEEecCccceeeeecCcEEEcCCceEEchh
Confidence 3469999999999999999999998764 211111 1111111 0110 011100 1123345789999999
Q ss_pred ccccccCCCCCCchhHHHHHHHHHhhccCC---------------cEEEEEecCchh--------HHHHHhhCccccccc
Q 013316 278 AYRLIPMQKADDKDYGIEALEEIMSVMDGG---------------KVVVIFAGYSEP--------MKRVIASNEGFCRRV 334 (445)
Q Consensus 278 id~l~~~~~~~~~~~~~~~~~~ll~~~~~~---------------~~~~i~a~~~~~--------~~~~~~~~~~l~~R~ 334 (445)
+|++.. ...+.|.+.|+.. +--|+++.++.. +..=+...|.|++||
T Consensus 535 FDKM~d-----------StrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRF 603 (804)
T KOG0478|consen 535 FDKMSD-----------STRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRF 603 (804)
T ss_pred hhhhhH-----------HHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhh
Confidence 999965 3345566666541 223444444211 112233459999999
Q ss_pred ccce-eCCCCCHHHHHHHHHHHHhcccccccc----------------cc-cccCCcccHHHHHHHHHHHHHHhhhccc-
Q 013316 335 TKFF-HFNDFNSEELAKILHIKMNNQTEDSLL----------------YG-FKLHSSCSMDAIAALIEKETTEKQRREM- 395 (445)
Q Consensus 335 ~~~i-~~~~~~~~~~~~il~~~l~~~~~~~~~----------------~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~- 395 (445)
|.++ -+..+|..-=+.|..|.+.-+.+.... +. -.+.+..++++...+++.+. ++|..+
T Consensus 604 DLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayv--d~rk~~~ 681 (804)
T KOG0478|consen 604 DLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYV--DMRKIGE 681 (804)
T ss_pred cEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhh--hhhhhcc
Confidence 9554 888888663344555554443321000 00 12356677777777777665 344433
Q ss_pred -Cc------hhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316 396 -NG------GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440 (445)
Q Consensus 396 -n~------r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 440 (445)
++ |++..++..+......+ ....+...||++|+.-+
T Consensus 682 ~~~~itat~rQlesLiRlsEahak~r---------~s~~ve~~dV~eA~~l~ 724 (804)
T KOG0478|consen 682 GAGQITATPRQLESLIRLSEAHAKMR---------LSNRVEEIDVEEAVRLL 724 (804)
T ss_pred cccccchhHHHHHHHHHHHHHHHHhh---------cccccchhhHHHHHHHH
Confidence 22 33333333332211111 12257777888877543
No 331
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.68 E-value=1.2e-08 Score=102.06 Aligned_cols=95 Identities=29% Similarity=0.436 Sum_probs=81.7
Q ss_pred HHHHHHhhC-CCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccC-CCCcHHHHHHHcCCHHHHHHHH
Q 013316 28 AFQRLLREN-PSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM-YGETPLHMAAKNGCNEAAKLLL 105 (445)
Q Consensus 28 ~v~~ll~~~-~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~-~g~tpLh~A~~~g~~~~~~~Ll 105 (445)
-++-++.+. +.-.|..|. .|+|+||+|+..+...++++||.+ |++++.+|. .|.||||-|..+|+++|+..|+
T Consensus 32 qlk~F~~k~c~n~anikD~-~GR~alH~~~S~~k~~~l~wLlqh----Gidv~vqD~ESG~taLHRaiyyG~idca~lLL 106 (1267)
T KOG0783|consen 32 QLKGFSEKSCQNLANIKDR-YGRTALHIAVSENKNSFLRWLLQH----GIDVFVQDEESGYTALHRAIYYGNIDCASLLL 106 (1267)
T ss_pred HHHHHHHHhhhhhhhHHHh-hccceeeeeeccchhHHHHHHHhc----CceeeeccccccchHhhHhhhhchHHHHHHHH
Confidence 345555543 334677787 699999999999999999999996 899999887 5999999999999999999999
Q ss_pred hcCCCCcccccCCCChhhhhhc
Q 013316 106 AHGAFIEAKANEGKTPLDHLSN 127 (445)
Q Consensus 106 ~~ga~~~~~~~~g~tpl~~~a~ 127 (445)
++|+...++|+.|.+||++++.
T Consensus 107 ~~g~SL~i~Dkeglsplq~~~r 128 (1267)
T KOG0783|consen 107 SKGRSLRIKDKEGLSPLQFLSR 128 (1267)
T ss_pred hcCCceEEecccCCCHHHHHhh
Confidence 9999999999999999966654
No 332
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=3.6e-07 Score=84.31 Aligned_cols=121 Identities=16% Similarity=0.139 Sum_probs=77.0
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHcCC---------CCCCCeEEeecccccccccCCchhHHHHHHHHc------
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---------LPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA------ 268 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~---------~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a------ 268 (445)
.-+...||+||+|+||+.+|..+|+.+.+... .....+..+.+.. .+..+ .-..++.+.+..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~I--~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRLH--SIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCcC--cHHHHHHHHHHHhhCccC
Confidence 34667889999999999999999999876321 0011122221110 00001 122344443332
Q ss_pred -cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCC
Q 013316 269 -EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN 344 (445)
Q Consensus 269 -~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~ 344 (445)
...|++||++|++.. ++.|.||+.+++ ...++|+.+++.... -|.++||+ ..+.|+++.
T Consensus 94 ~~~kv~ii~~ad~mt~-----------~AaNaLLK~LEEPp~~~~fiL~~~~~~~l-----l~TI~SRc-q~~~~~~~~ 155 (290)
T PRK05917 94 SPYKIYIIHEADRMTL-----------DAISAFLKVLEDPPQHGVIILTSAKPQRL-----PPTIRSRS-LSIHIPMEE 155 (290)
T ss_pred CCceEEEEechhhcCH-----------HHHHHHHHHhhcCCCCeEEEEEeCChhhC-----cHHHHhcc-eEEEccchh
Confidence 337999999999987 889999999997 455555554443221 57889998 888888654
No 333
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.67 E-value=3.4e-08 Score=59.74 Aligned_cols=32 Identities=53% Similarity=0.756 Sum_probs=22.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 013316 84 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA 115 (445)
Q Consensus 84 ~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~ 115 (445)
+|.||||+|+..|+.+++++|+++|++++.+|
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d 32 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD 32 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 36677777777777777777777777776665
No 334
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.66 E-value=5.9e-08 Score=79.82 Aligned_cols=102 Identities=25% Similarity=0.309 Sum_probs=62.3
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCC-CCCCCeEEeecccccc------c---ccC------CchhHHHH----HH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGI-LPTDRVTEVQRTDLVG------E---FVG------HTGPKTRR----RI 265 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~-~~~~~~~~~~~~~l~~------~---~~g------~~~~~~~~----~~ 265 (445)
...++++||||+|||++++.++..+..... ....+++.++++.... . .++ .+...+.+ .+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 457899999999999999999998853100 0022566666655321 0 011 12232223 33
Q ss_pred HHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316 266 KEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 317 (445)
Q Consensus 266 ~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~ 317 (445)
......+|+|||+|.+. + .+.++.|...+++..+.+|.++++
T Consensus 84 ~~~~~~~lviDe~~~l~-~---------~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S---------DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T---------HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-C---------HHHHHHHHHHHhCCCCeEEEEECh
Confidence 33334699999999984 1 277888888888888888877665
No 335
>PF05729 NACHT: NACHT domain
Probab=98.64 E-value=5.9e-07 Score=76.97 Aligned_cols=144 Identities=15% Similarity=0.244 Sum_probs=80.2
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHHcCCCCC--CCeEEeeccccccc---------c---cCCchhH----HHHHHHHcc
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYMVGILPT--DRVTEVQRTDLVGE---------F---VGHTGPK----TRRRIKEAE 269 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~--~~~~~~~~~~l~~~---------~---~g~~~~~----~~~~~~~a~ 269 (445)
.++++|+||+|||++++.++..+........ ..++.+.+...... + ....... .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 4789999999999999999998876443221 12223333322111 0 0111111 122344456
Q ss_pred CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccc--cceeCCCCCHHH
Q 013316 270 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEE 347 (445)
Q Consensus 270 ~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~ 347 (445)
..+|+||-+|.+....+..........+..++..--..++.++.++++..... +.+++. ..+.+++++.++
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPD-------LRRRLKQAQILELEPFSEED 154 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHH-------HHHhcCCCcEEEECCCCHHH
Confidence 68999999999987433101111223333444331113344555544444432 222222 568999999999
Q ss_pred HHHHHHHHHhc
Q 013316 348 LAKILHIKMNN 358 (445)
Q Consensus 348 ~~~il~~~l~~ 358 (445)
+.++++.+++.
T Consensus 155 ~~~~~~~~f~~ 165 (166)
T PF05729_consen 155 IKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHhhc
Confidence 99999988763
No 336
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.64 E-value=2.8e-07 Score=83.16 Aligned_cols=124 Identities=24% Similarity=0.400 Sum_probs=76.6
Q ss_pred HHHHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC
Q 013316 161 MDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 239 (445)
Q Consensus 161 ~~~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~ 239 (445)
.+.++..+++ |.||.-+++.|...++..... .....|..+-|+|+|||||..+++.||+.+.+.+. .+.
T Consensus 73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n---------~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl-~S~ 142 (344)
T KOG2170|consen 73 LDGLEKDLARALFGQHLAKQLVVNALKSHWAN---------PNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGL-RSP 142 (344)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHHHHHHhcC---------CCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccc-cch
Confidence 3445556655 999999998888766544211 11234455668999999999999999999987443 111
Q ss_pred CeEEe----eccc--ccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc
Q 013316 240 RVTEV----QRTD--LVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 305 (445)
Q Consensus 240 ~~~~~----~~~~--l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~ 305 (445)
.+..+ ++.. -+..|--+-...+++.....+.++.++||+|++.+ ..++.|-.++|
T Consensus 143 ~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~-----------gLld~lkpfLd 203 (344)
T KOG2170|consen 143 FVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP-----------GLLDVLKPFLD 203 (344)
T ss_pred hHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH-----------hHHHHHhhhhc
Confidence 11111 1100 11111111222344455566779999999999987 67777777776
No 337
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.64 E-value=1.2e-07 Score=89.86 Aligned_cols=86 Identities=29% Similarity=0.364 Sum_probs=62.3
Q ss_pred HhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHc
Q 013316 16 TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKN 95 (445)
Q Consensus 16 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~ 95 (445)
.||.+++.|++++.-+||. .|+++|......|.||||+|+..|+.--+++|+-+ |+|++..|.+|.||+.+|-..
T Consensus 136 QLhasvRt~nlet~LRll~-lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vY----GAD~~a~d~~GmtP~~~AR~~ 210 (669)
T KOG0818|consen 136 QLHSSVRTGNLETCLRLLS-LGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVY----GADPGAQDSSGMTPVDYARQG 210 (669)
T ss_pred HHHHHhhcccHHHHHHHHH-cccccCCCCcccCCchhHHHHhccchhhhhHHhhc----cCCCCCCCCCCCcHHHHHHhc
Confidence 3777777777777666664 46777777666677777777777777777777664 777777777777777777777
Q ss_pred CCHHHHHHHHh
Q 013316 96 GCNEAAKLLLA 106 (445)
Q Consensus 96 g~~~~~~~Ll~ 106 (445)
||.++.+.|++
T Consensus 211 gH~~laeRl~e 221 (669)
T KOG0818|consen 211 GHHELAERLVE 221 (669)
T ss_pred CchHHHHHHHH
Confidence 77776666655
No 338
>PRK06526 transposase; Provisional
Probab=98.63 E-value=8.5e-08 Score=87.77 Aligned_cols=75 Identities=28% Similarity=0.337 Sum_probs=49.1
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccC-CchhHHHHHHHH-ccCcEEEEcCccccc
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG-HTGPKTRRRIKE-AEGGILFVDEAYRLI 282 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~~-a~~~il~lDEid~l~ 282 (445)
...+++|+||||||||.+|.+|+..+...+. .+..++.+++...+.. .......+.+.. ....+|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~----~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGH----RVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIP 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCC----chhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCC
Confidence 4568999999999999999999998876443 4444555555444321 111122233333 345799999998775
Q ss_pred c
Q 013316 283 P 283 (445)
Q Consensus 283 ~ 283 (445)
.
T Consensus 173 ~ 173 (254)
T PRK06526 173 F 173 (254)
T ss_pred C
Confidence 4
No 339
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.59 E-value=8.8e-07 Score=87.40 Aligned_cols=243 Identities=19% Similarity=0.256 Sum_probs=133.9
Q ss_pred HhhhcchHHHHHHHH-HHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC-------
Q 013316 169 SNIVGLHELKIQLRK-WAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR------- 240 (445)
Q Consensus 169 ~~l~g~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~------- 240 (445)
..|.|.+.+|.-|.= +...+ ++..+.....+...||++.|.|||||+-+.++.+..+.+. +-.++.
T Consensus 345 PsIyGhe~VK~GilL~LfGGv-----~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~-vYtsGkaSSaAGL 418 (764)
T KOG0480|consen 345 PSIYGHELVKAGILLSLFGGV-----HKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRS-VYTSGKASSAAGL 418 (764)
T ss_pred ccccchHHHHhhHHHHHhCCc-----cccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcc-eEecCcccccccc
Confidence 458888887765432 11111 1222223334556799999999999999999998876541 000111
Q ss_pred eEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcE-----------
Q 013316 241 VTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV----------- 309 (445)
Q Consensus 241 ~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------- 309 (445)
-..+....-.+.|.-+.+ .+-.|.+||=.|||+|++.- .-+..+..+|+...|
T Consensus 419 TaaVvkD~esgdf~iEAG-----ALmLADnGICCIDEFDKMd~-----------~dqvAihEAMEQQtISIaKAGv~aTL 482 (764)
T KOG0480|consen 419 TAAVVKDEESGDFTIEAG-----ALMLADNGICCIDEFDKMDV-----------KDQVAIHEAMEQQTISIAKAGVVATL 482 (764)
T ss_pred eEEEEecCCCCceeeecC-----cEEEccCceEEechhcccCh-----------HhHHHHHHHHHhheehheecceEEee
Confidence 011111111111211111 33456889999999999875 234577778875322
Q ss_pred ----EEEEecCch--------hHHHHHhhCcccccccc-cceeCCCCCHHHHHHHHHHHHhccccccc------------
Q 013316 310 ----VVIFAGYSE--------PMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSL------------ 364 (445)
Q Consensus 310 ----~~i~a~~~~--------~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~------------ 364 (445)
-+|+|+++. .+..=+...+++.+||| ..|-+..+++..=..|.++.++.+.....
T Consensus 483 nARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~ 562 (764)
T KOG0480|consen 483 NARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQ 562 (764)
T ss_pred cchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHH
Confidence 333443321 11122233588999999 45588999877767777776654321110
Q ss_pred -----ccccccCCcccHHHHHHHHHHHHHHhhhc---------ccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccH
Q 013316 365 -----LYGFKLHSSCSMDAIAALIEKETTEKQRR---------EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITL 430 (445)
Q Consensus 365 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 430 (445)
.+.-.+.|..+.++-..+.+.|-+-..+. +...|+|+.++.-+... .|. +-...+|+
T Consensus 563 vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~--Ar~-------~~~devt~ 633 (764)
T KOG0480|consen 563 VRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEAR--ARV-------ECRDEVTK 633 (764)
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHH--Hhh-------hhhhhccH
Confidence 01113345555666555555444333333 55667777777644111 111 12237999
Q ss_pred HHHHHHHHHHHh
Q 013316 431 EDLEAGLKLLLR 442 (445)
Q Consensus 431 ~d~~~a~~~~~~ 442 (445)
+|++++++-++.
T Consensus 634 ~~v~ea~eLlk~ 645 (764)
T KOG0480|consen 634 EDVEEAVELLKK 645 (764)
T ss_pred HHHHHHHHHHHh
Confidence 999999986654
No 340
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.56 E-value=1e-06 Score=88.39 Aligned_cols=200 Identities=15% Similarity=0.212 Sum_probs=102.0
Q ss_pred HhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe-ecc
Q 013316 169 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV-QRT 247 (445)
Q Consensus 169 ~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~-~~~ 247 (445)
++|.-...-.++|+.|+..... +.....-+||+||||||||++++.+|++++. .+.+- ++.
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~-----------~~~~~~iLlLtGP~G~GKtttv~~La~elg~-------~v~Ew~np~ 80 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFS-----------GSSPKRILLLTGPSGCGKTTTVKVLAKELGF-------EVQEWINPV 80 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhc-----------cCCCcceEEEECCCCCCHHHHHHHHHHHhCC-------eeEEecCCC
Confidence 4455555555677777664321 1223346778999999999999999999864 11111 111
Q ss_pred c------ccccccCC--------c-hhHHHHH-HHH--------------ccCcEEEEcCccccccCCCCCCchhHHHHH
Q 013316 248 D------LVGEFVGH--------T-GPKTRRR-IKE--------------AEGGILFVDEAYRLIPMQKADDKDYGIEAL 297 (445)
Q Consensus 248 ~------l~~~~~g~--------~-~~~~~~~-~~~--------------a~~~il~lDEid~l~~~~~~~~~~~~~~~~ 297 (445)
. ....+.+. + ....... ++. ....||+|||+=.+.-. +. ....
T Consensus 81 ~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~------~~-~~f~ 153 (519)
T PF03215_consen 81 SFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR------DT-SRFR 153 (519)
T ss_pred CccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch------hH-HHHH
Confidence 1 00001110 0 0001111 111 13479999999654431 11 3444
Q ss_pred HHHHhhccC--C-cEEEEEecC--ch---hHHH----HH-hhCccccccc-ccceeCCCCCHHHHHHHHHHHHhcccccc
Q 013316 298 EEIMSVMDG--G-KVVVIFAGY--SE---PMKR----VI-ASNEGFCRRV-TKFFHFNDFNSEELAKILHIKMNNQTEDS 363 (445)
Q Consensus 298 ~~ll~~~~~--~-~~~~i~a~~--~~---~~~~----~~-~~~~~l~~R~-~~~i~~~~~~~~~~~~il~~~l~~~~~~~ 363 (445)
+.|.+.+.. . .+++|++-+ .. .... .. -..+.++... -..|.|.+.++.-+...|...+.++....
T Consensus 154 ~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~ 233 (519)
T PF03215_consen 154 EALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSS 233 (519)
T ss_pred HHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 445555543 2 456666521 00 0000 00 0124444432 27789999999999888888887653221
Q ss_pred cccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316 364 LLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 397 (445)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~ 397 (445)
. +....+ +...+.+.+...+.||+|.+.|.
T Consensus 234 ~--~~~~~p--~~~~~l~~I~~~s~GDIRsAIn~ 263 (519)
T PF03215_consen 234 S--GKNKVP--DKQSVLDSIAESSNGDIRSAINN 263 (519)
T ss_pred c--CCccCC--ChHHHHHHHHHhcCchHHHHHHH
Confidence 1 001111 12233335556667888877664
No 341
>PF13606 Ank_3: Ankyrin repeat
Probab=98.54 E-value=7.9e-08 Score=56.45 Aligned_cols=29 Identities=41% Similarity=0.590 Sum_probs=24.7
Q ss_pred CCChHHHHHHhCCcHHHHHHhhcCCCCCCcccc
Q 013316 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79 (445)
Q Consensus 47 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~ 79 (445)
+|+||||+||..|+.+++++|+++ |+|+|
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~----gadvn 29 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEH----GADVN 29 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHc----CCCCC
Confidence 388999999999999999999985 77776
No 342
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.52 E-value=2.5e-07 Score=89.10 Aligned_cols=119 Identities=29% Similarity=0.319 Sum_probs=98.6
Q ss_pred hHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcC
Q 013316 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG 96 (445)
Q Consensus 17 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g 96 (445)
+..|+..+++-.+.+.-. .|.++-.++. +-.+.||+|+..|+-++|+|+|+++. ..-++..|..|.|+||-|+..+
T Consensus 870 il~av~~~D~~klqE~h~-~gg~ll~~~~-~~~sllh~a~~tg~~eivkyildh~p--~elld~~de~get~lhkaa~~~ 945 (1004)
T KOG0782|consen 870 ILRAVLSSDLMKLQETHL-NGGSLLIQGP-DHCSLLHYAAKTGNGEIVKYILDHGP--SELLDMADETGETALHKAACQR 945 (1004)
T ss_pred HHHHHHhccHHHHHHHHh-cCCceEeeCc-chhhHHHHHHhcCChHHHHHHHhcCC--HHHHHHHhhhhhHHHHHHHHhc
Confidence 678888888655555543 4555666665 67899999999999999999999843 2345778889999999999999
Q ss_pred CHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHh
Q 013316 97 CNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLW 140 (445)
Q Consensus 97 ~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~ 140 (445)
+-.++.+|++.||.....|..|.||- .-|...+..++..+|.+
T Consensus 946 ~r~vc~~lvdagasl~ktd~kg~tp~-eraqqa~d~dlaayle~ 988 (1004)
T KOG0782|consen 946 NRAVCQLLVDAGASLRKTDSKGKTPQ-ERAQQAGDPDLAAYLES 988 (1004)
T ss_pred chHHHHHHHhcchhheecccCCCChH-HHHHhcCCchHHHHHhh
Confidence 99999999999999999999999998 67777788888888743
No 343
>PRK06921 hypothetical protein; Provisional
Probab=98.51 E-value=4e-07 Score=84.10 Aligned_cols=71 Identities=23% Similarity=0.390 Sum_probs=45.2
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHc-CCCCCCCeEEeecccccccccCCchhHHHHHHHHc-cCcEEEEcCccc
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMV-GILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYR 280 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~-~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~ 280 (445)
...+++|+||||||||.+|.+|++.+... +. .++.++..++...+... -....+.++.. .--+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~----~v~y~~~~~l~~~l~~~-~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGV----PVLYFPFVEGFGDLKDD-FDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCc----eEEEEEHHHHHHHHHHH-HHHHHHHHHHhcCCCEEEEecccc
Confidence 35689999999999999999999988653 32 55666665544332110 01112222222 347999999944
No 344
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=2.8e-06 Score=79.39 Aligned_cols=128 Identities=9% Similarity=0.074 Sum_probs=83.4
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCC--C--CCC--CeEEeecccccccccCCchhHHHHHHHHc--------cC
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI--L--PTD--RVTEVQRTDLVGEFVGHTGPKTRRRIKEA--------EG 270 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~--~--~~~--~~~~~~~~~l~~~~~g~~~~~~~~~~~~a--------~~ 270 (445)
-.+..||+|+.|+||+.+|+.+++.+.+... . ... .+..++.. +.-. .-..++.+.+.. ..
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i--~vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDL--SKSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcC--CHHHHHHHHHHhccCCcccCCc
Confidence 3445779999999999999999998844210 0 011 12222210 1000 123444443322 45
Q ss_pred cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHH
Q 013316 271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEEL 348 (445)
Q Consensus 271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~ 348 (445)
.|++||++|.+.. .+.+.|++.+++ ...++|+.++.. ..+ -|.+++|+ +++.|++++.+++
T Consensus 92 KvvII~~~e~m~~-----------~a~NaLLK~LEEPp~~t~~il~~~~~--~kl---l~TI~SRc-~~~~f~~l~~~~l 154 (299)
T PRK07132 92 KILIIKNIEKTSN-----------SLLNALLKTIEEPPKDTYFLLTTKNI--NKV---LPTIVSRC-QVFNVKEPDQQKI 154 (299)
T ss_pred eEEEEecccccCH-----------HHHHHHHHHhhCCCCCeEEEEEeCCh--HhC---hHHHHhCe-EEEECCCCCHHHH
Confidence 8999999988865 788999999987 445555554432 222 57789998 9999999999998
Q ss_pred HHHHHH
Q 013316 349 AKILHI 354 (445)
Q Consensus 349 ~~il~~ 354 (445)
.+.+..
T Consensus 155 ~~~l~~ 160 (299)
T PRK07132 155 LAKLLS 160 (299)
T ss_pred HHHHHH
Confidence 877654
No 345
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.50 E-value=1.1e-07 Score=89.88 Aligned_cols=91 Identities=31% Similarity=0.367 Sum_probs=83.1
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~ 91 (445)
.+..++++|++.|++..+++++.. +.+++.+| |+.+|+||+||..|+.+++++|++. .+.+++.+|.||+|||--
T Consensus 505 ~~~i~~~~aa~~GD~~alrRf~l~-g~D~~~~D-yD~RTaLHvAAaEG~v~v~kfl~~~---~kv~~~~kDRw~rtPlDd 579 (622)
T KOG0506|consen 505 DTVINVMYAAKNGDLSALRRFALQ-GMDLETKD-YDDRTALHVAAAEGHVEVVKFLLNA---CKVDPDPKDRWGRTPLDD 579 (622)
T ss_pred cchhhhhhhhhcCCHHHHHHHHHh-cccccccc-cccchhheeecccCceeHHHHHHHH---HcCCCChhhccCCCcchH
Confidence 456789999999999999999864 78999998 5899999999999999999999986 577889999999999999
Q ss_pred HHHcCCHHHHHHHHhc
Q 013316 92 AAKNGCNEAAKLLLAH 107 (445)
Q Consensus 92 A~~~g~~~~~~~Ll~~ 107 (445)
|...+|.+++++|-+.
T Consensus 580 A~~F~h~~v~k~L~~~ 595 (622)
T KOG0506|consen 580 AKHFKHKEVVKLLEEA 595 (622)
T ss_pred hHhcCcHHHHHHHHHH
Confidence 9999999999999875
No 346
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.50 E-value=4.9e-07 Score=85.87 Aligned_cols=87 Identities=32% Similarity=0.329 Sum_probs=76.6
Q ss_pred HHHHHHhCCcHHHHHHhhcCCCCCCcccccccC-CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCC
Q 013316 51 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM-YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGP 129 (445)
Q Consensus 51 pLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~-~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~ 129 (445)
-||..++.|+.+..--||.. |+++|..+. .|.||||+|++.|+..-+++|+-+|||+++.|.+|.||+ .+|...
T Consensus 136 QLhasvRt~nlet~LRll~l----GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~-~~AR~~ 210 (669)
T KOG0818|consen 136 QLHSSVRTGNLETCLRLLSL----GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPV-DYARQG 210 (669)
T ss_pred HHHHHhhcccHHHHHHHHHc----ccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHH-HHHHhc
Confidence 48999999999988777775 888887554 599999999999999999999999999999999999999 778888
Q ss_pred CChHHHHHHHhhh
Q 013316 130 GSAKLRELLLWHS 142 (445)
Q Consensus 130 ~~~~i~~~ll~~~ 142 (445)
++.++.+-|.+..
T Consensus 211 gH~~laeRl~e~~ 223 (669)
T KOG0818|consen 211 GHHELAERLVEIQ 223 (669)
T ss_pred CchHHHHHHHHHH
Confidence 9888888776554
No 347
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.49 E-value=2.8e-07 Score=79.84 Aligned_cols=73 Identities=22% Similarity=0.281 Sum_probs=48.2
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCC-chhHHHHHHHHc-cCcEEEEcCcccc
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH-TGPKTRRRIKEA-EGGILFVDEAYRL 281 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~a-~~~il~lDEid~l 281 (445)
...+++|+||||||||.+|-++++.+...+. .+..++.+++...+... ......+.+... .--+|+|||+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~----~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGY----SVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYE 120 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT------EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCc----ceeEeecCceeccccccccccchhhhcCccccccEeccccccee
Confidence 4568999999999999999999998877554 67778888876654321 111122233222 3479999999543
No 348
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=1e-06 Score=79.56 Aligned_cols=121 Identities=7% Similarity=0.011 Sum_probs=77.0
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC-eEEeeccccccc------c-cCC----chhHHHHHHHH----
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR-VTEVQRTDLVGE------F-VGH----TGPKTRRRIKE---- 267 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~-~~~~~~~~l~~~------~-~g~----~~~~~~~~~~~---- 267 (445)
..+...||+||+|+||..+|.++|+.+-+... .++ =.+.+|..+... + +.. .-..++++.+.
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~--~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~ 82 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKA--NGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRP 82 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCC--CCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccC
Confidence 46778999999999999999999998865321 111 011111111100 0 000 12233333321
Q ss_pred ----ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCC
Q 013316 268 ----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFN 341 (445)
Q Consensus 268 ----a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~ 341 (445)
....|++|+++|++.. ++.|.||+.+++ .+.++|+.+++.... -|.++||+ +.+.|+
T Consensus 83 s~e~~~~KV~II~~ae~m~~-----------~AaNaLLK~LEEPp~~t~fiLit~~~~~l-----LpTI~SRC-q~~~~~ 145 (261)
T PRK05818 83 SVESNGKKIYIIYGIEKLNK-----------QSANSLLKLIEEPPKNTYGIFTTRNENNI-----LNTILSRC-VQYVVL 145 (261)
T ss_pred chhcCCCEEEEeccHhhhCH-----------HHHHHHHHhhcCCCCCeEEEEEECChHhC-----chHhhhhe-eeeecC
Confidence 2347999999999987 888999999997 455555554433222 58899998 778898
Q ss_pred CC
Q 013316 342 DF 343 (445)
Q Consensus 342 ~~ 343 (445)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 88
No 349
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.46 E-value=2e-07 Score=56.37 Aligned_cols=33 Identities=33% Similarity=0.487 Sum_probs=27.8
Q ss_pred CCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccC
Q 013316 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM 83 (445)
Q Consensus 47 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~ 83 (445)
+|.||||+|+..|+.+++++|+++ |++++.+|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~----ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKH----GADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHT----TSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHC----cCCCCCCCC
Confidence 388999999999999999999985 888887763
No 350
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.46 E-value=5.5e-07 Score=86.58 Aligned_cols=89 Identities=31% Similarity=0.449 Sum_probs=55.0
Q ss_pred HHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCC
Q 013316 51 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPG 130 (445)
Q Consensus 51 pLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~ 130 (445)
|+|+++.....+-....+... .+..++.+|..|+||||+|+.-|+...++.|+.+||++..+|++||+|| +-|...+
T Consensus 23 ~lh~~~~~~~~~sl~~el~~~--~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L-~EAv~~g 99 (560)
T KOG0522|consen 23 PLHWAVVTTDSDSLEQELLAK--VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPL-HEAVSTG 99 (560)
T ss_pred ccchhhhccchhhHHHHHhhh--hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHH-HHHHHcC
Confidence 467776666555444333211 2345566677777777777777777777777777777777777777777 5555555
Q ss_pred ChHHHHHHHhhh
Q 013316 131 SAKLRELLLWHS 142 (445)
Q Consensus 131 ~~~i~~~ll~~~ 142 (445)
+.+++.-++.+.
T Consensus 100 ~~q~i~~vlr~~ 111 (560)
T KOG0522|consen 100 NEQIITEVLRHL 111 (560)
T ss_pred CHHHHHHHHHHh
Confidence 555555554443
No 351
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.46 E-value=4.4e-07 Score=87.74 Aligned_cols=91 Identities=24% Similarity=0.285 Sum_probs=62.3
Q ss_pred hHhHHHHHcCCHHHHHHHHhhCCCC--cC-CCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316 15 ATIHGCAQSGDLLAFQRLLRENPSL--LN-ERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (445)
Q Consensus 15 t~L~~A~~~g~~~~v~~ll~~~~~~--~~-~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~ 91 (445)
..|.-|+...|+..+..||. +|.. +| +..+.+|+|+||+||..|++.+.++|+.+ |+|+..+|..|+|+|.|
T Consensus 626 qqLl~A~~~~Dl~t~~lLLA-hg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWy----g~dv~~rda~g~t~l~y 700 (749)
T KOG0705|consen 626 QQLLRAVAAEDLQTAILLLA-HGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWY----GVDVMARDAHGRTALFY 700 (749)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHh----CccceecccCCchhhhh
Confidence 34666777777766665554 3332 22 22222567888888888888877877775 77777788888888888
Q ss_pred HHHcCCHHHHHHHHhcCCC
Q 013316 92 AAKNGCNEAAKLLLAHGAF 110 (445)
Q Consensus 92 A~~~g~~~~~~~Ll~~ga~ 110 (445)
|-+.|..+|+.+|+.+|+-
T Consensus 701 ar~a~sqec~d~llq~gcp 719 (749)
T KOG0705|consen 701 ARQAGSQECIDVLLQYGCP 719 (749)
T ss_pred HhhcccHHHHHHHHHcCCC
Confidence 8888888888888877765
No 352
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=2.6e-06 Score=78.92 Aligned_cols=130 Identities=17% Similarity=0.231 Sum_probs=80.3
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCe-EEeecccccc-c-----cc---CC--chhHHHHHHHHc---
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV-TEVQRTDLVG-E-----FV---GH--TGPKTRRRIKEA--- 268 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~-~~~~~~~l~~-~-----~~---g~--~~~~~~~~~~~a--- 268 (445)
+.+...||+|| +||+++|+.+|+.+.+.......+. .+-+|..+.. . ++ |. .-..++.+.+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 34567899996 6899999999998876432111010 0111111100 0 11 11 223455544332
Q ss_pred ----cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCC
Q 013316 269 ----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND 342 (445)
Q Consensus 269 ----~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~ 342 (445)
...|++||++|++.. .+.|.||+.+++ ...++|+.+++... + -|.++||+ +.|+|+.
T Consensus 100 p~~~~~kV~II~~ad~m~~-----------~AaNaLLKtLEEPp~~t~~iL~t~~~~~--l---LpTI~SRc-q~i~f~~ 162 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHV-----------NAANSLLKVIEEPQSEIYIFLLTNDENK--V---LPTIKSRT-QIFHFPK 162 (290)
T ss_pred cccCCcEEEEeehhhhcCH-----------HHHHHHHHHhcCCCCCeEEEEEECChhh--C---chHHHHcc-eeeeCCC
Confidence 347999999999987 788999999997 33555555443221 1 58899999 9999977
Q ss_pred CCHHHHHHHHH
Q 013316 343 FNSEELAKILH 353 (445)
Q Consensus 343 ~~~~~~~~il~ 353 (445)
+.+++.+++.
T Consensus 163 -~~~~~~~~L~ 172 (290)
T PRK07276 163 -NEAYLIQLLE 172 (290)
T ss_pred -cHHHHHHHHH
Confidence 6666666654
No 353
>PRK09183 transposase/IS protein; Provisional
Probab=98.44 E-value=6.5e-07 Score=82.47 Aligned_cols=75 Identities=25% Similarity=0.327 Sum_probs=48.6
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccC-CchhHHHHHHHH--ccCcEEEEcCcccc
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG-HTGPKTRRRIKE--AEGGILFVDEAYRL 281 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~~--a~~~il~lDEid~l 281 (445)
...+++|+||||||||++|.+++......+. .+..++..++...+.. .....+...+.. ....+|+|||++..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~----~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGI----KVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL 176 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC----eEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence 4568999999999999999999888655332 5555666665433211 111123344433 34579999999776
Q ss_pred cc
Q 013316 282 IP 283 (445)
Q Consensus 282 ~~ 283 (445)
..
T Consensus 177 ~~ 178 (259)
T PRK09183 177 PF 178 (259)
T ss_pred CC
Confidence 44
No 354
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.41 E-value=1.8e-06 Score=79.16 Aligned_cols=75 Identities=25% Similarity=0.378 Sum_probs=53.0
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCC-c-hhHHHHHHH-HccCcEEEEcCcccc
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH-T-GPKTRRRIK-EAEGGILFVDEAYRL 281 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~-~~~~~~~~~-~a~~~il~lDEid~l 281 (445)
...+++|+||||||||.+|-+|++.+...+. .+..++.++++..+-.. . +..-.++.. -...-+|+|||+-..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~----sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGI----SVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCC----eEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCc
Confidence 5679999999999999999999999986455 78888888887664321 1 111122233 234469999999665
Q ss_pred cc
Q 013316 282 IP 283 (445)
Q Consensus 282 ~~ 283 (445)
..
T Consensus 180 ~~ 181 (254)
T COG1484 180 PF 181 (254)
T ss_pred cC
Confidence 43
No 355
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.41 E-value=1.3e-06 Score=82.23 Aligned_cols=74 Identities=16% Similarity=0.284 Sum_probs=49.8
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCC-chhHHHHHHHHc-cCcEEEEcCccccc
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH-TGPKTRRRIKEA-EGGILFVDEAYRLI 282 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~a-~~~il~lDEid~l~ 282 (445)
...+++|+||+|||||.+|.++++.+...+. .+..+..+++...+-.. ......+.++.. .--+|+|||+..-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~----~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~ 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGV----SSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQ 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCC----CEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCcc
Confidence 4568999999999999999999999976544 56666766665443211 111123344333 34799999995543
No 356
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.39 E-value=3.8e-07 Score=84.44 Aligned_cols=138 Identities=18% Similarity=0.226 Sum_probs=72.9
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC--eEEeecccccccccCCchhHHHHHHHHc--------------
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR--VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------------- 268 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~--~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------------- 268 (445)
...++||.||+|||||++++.+=..+.. .. ...++++... +...+.+.++..
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~------~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~ 99 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDS------DKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGG 99 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTT------CCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESS
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCc------cccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCC
Confidence 3568999999999999999875433221 12 2233443311 122222222111
Q ss_pred cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhh---ccC--------CcEEEEEecCchhHHHHHhhCcccccccccc
Q 013316 269 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG--------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKF 337 (445)
Q Consensus 269 ~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~---~~~--------~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~ 337 (445)
+..|+|||++..-.+...+ .....+.+.+++.. .+. .++.+|+|.++..-. ....|.|.|.| .+
T Consensus 100 k~lv~fiDDlN~p~~d~yg--tq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr--~~is~R~~r~f-~i 174 (272)
T PF12775_consen 100 KKLVLFIDDLNMPQPDKYG--TQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGR--NPISPRFLRHF-NI 174 (272)
T ss_dssp SEEEEEEETTT-S---TTS----HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT----SHHHHHHTTE-EE
T ss_pred cEEEEEecccCCCCCCCCC--CcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCC--CCCChHHhhhe-EE
Confidence 2379999999766653321 22222333333321 111 246777776653211 12357777777 78
Q ss_pred eeCCCCCHHHHHHHHHHHHhcc
Q 013316 338 FHFNDFNSEELAKILHIKMNNQ 359 (445)
Q Consensus 338 i~~~~~~~~~~~~il~~~l~~~ 359 (445)
+.++.|+.+.+..|+..++...
T Consensus 175 ~~~~~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 175 LNIPYPSDESLNTIFSSILQSH 196 (272)
T ss_dssp EE----TCCHHHHHHHHHHHHH
T ss_pred EEecCCChHHHHHHHHHHHhhh
Confidence 9999999999999999888753
No 357
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.35 E-value=1.1e-06 Score=84.49 Aligned_cols=87 Identities=23% Similarity=0.374 Sum_probs=73.8
Q ss_pred hHhHHHHHcCCHHHHHHHHhhC-CCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH
Q 013316 15 ATIHGCAQSGDLLAFQRLLREN-PSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA 93 (445)
Q Consensus 15 t~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~ 93 (445)
.|+|+++...+.+.+...+... ...++..|. .|.||||+|+.-||...++.|+. .|+++.++|+.|++|||-|+
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~-~g~TpLhlAV~Lg~~~~a~~Ll~----a~Adv~~kN~~gWs~L~EAv 96 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDP-PGRTPLHLAVRLGHVEAARILLS----AGADVSIKNNEGWSPLHEAV 96 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccC-CCCccHHHHHHhcCHHHHHHHHh----cCCCccccccccccHHHHHH
Confidence 4699999998888777755443 345667775 79999999999999999999998 48999999999999999999
Q ss_pred HcCCHHHHHHHHh
Q 013316 94 KNGCNEAAKLLLA 106 (445)
Q Consensus 94 ~~g~~~~~~~Ll~ 106 (445)
..|+..++..++.
T Consensus 97 ~~g~~q~i~~vlr 109 (560)
T KOG0522|consen 97 STGNEQIITEVLR 109 (560)
T ss_pred HcCCHHHHHHHHH
Confidence 9999988776664
No 358
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.32 E-value=4.5e-06 Score=66.41 Aligned_cols=64 Identities=33% Similarity=0.527 Sum_probs=45.5
Q ss_pred HHHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316 162 DELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG 234 (445)
Q Consensus 162 ~~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~ 234 (445)
..++..|.+ |.||.-+.+.+.+.+...... .....|..+.|.|+||||||.+++.||+.+...+
T Consensus 17 ~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~---------~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G 81 (127)
T PF06309_consen 17 TGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN---------PNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSG 81 (127)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHcC---------CCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcc
Confidence 344555554 999999888887766544211 1223444566899999999999999999988754
No 359
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.32 E-value=4.6e-07 Score=91.10 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=73.3
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~ 91 (445)
-|.|+||.++..|....+++||. +|.+++.+|.+.|+||||.|..+|+.+++.+||++ |..+.++|.+|..||.+
T Consensus 51 ~GR~alH~~~S~~k~~~l~wLlq-hGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~----g~SL~i~Dkeglsplq~ 125 (1267)
T KOG0783|consen 51 YGRTALHIAVSENKNSFLRWLLQ-HGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSK----GRSLRIKDKEGLSPLQF 125 (1267)
T ss_pred hccceeeeeeccchhHHHHHHHh-cCceeeeccccccchHhhHhhhhchHHHHHHHHhc----CCceEEecccCCCHHHH
Confidence 59999999999999999999986 59999999988999999999999999999999996 78899999999999999
Q ss_pred HHH
Q 013316 92 AAK 94 (445)
Q Consensus 92 A~~ 94 (445)
-++
T Consensus 126 ~~r 128 (1267)
T KOG0783|consen 126 LSR 128 (1267)
T ss_pred Hhh
Confidence 887
No 360
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.31 E-value=1.2e-06 Score=84.76 Aligned_cols=92 Identities=25% Similarity=0.286 Sum_probs=77.6
Q ss_pred hHHHHHHhCCcHHHHHHhhcCCCCCCcccc--cccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhc
Q 013316 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELE--AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSN 127 (445)
Q Consensus 50 tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~--~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~ 127 (445)
.-|..|+...++..+-+||.++. ...+| ..+.+|+|+||+||+.|++.+.++|+-+|+|+.++|.+|.||| ++|.
T Consensus 626 qqLl~A~~~~Dl~t~~lLLAhg~--~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l-~yar 702 (749)
T KOG0705|consen 626 QQLLRAVAAEDLQTAILLLAHGS--REEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTAL-FYAR 702 (749)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC--chhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhh-hhHh
Confidence 34666777777888888998743 22333 3566789999999999999999999999999999999999999 9999
Q ss_pred CCCChHHHHHHHhhhhh
Q 013316 128 GPGSAKLRELLLWHSEE 144 (445)
Q Consensus 128 ~~~~~~i~~~ll~~~~~ 144 (445)
..+..++..+|+.+|..
T Consensus 703 ~a~sqec~d~llq~gcp 719 (749)
T KOG0705|consen 703 QAGSQECIDVLLQYGCP 719 (749)
T ss_pred hcccHHHHHHHHHcCCC
Confidence 99999999999988854
No 361
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.29 E-value=7.6e-05 Score=68.81 Aligned_cols=160 Identities=13% Similarity=0.234 Sum_probs=91.2
Q ss_pred hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHH-HHHHHHHHcCCCCCCCeEEeecccc
Q 013316 171 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVAR-ILGRLLYMVGILPTDRVTEVQRTDL 249 (445)
Q Consensus 171 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~-~la~~~~~~~~~~~~~~~~~~~~~l 249 (445)
+.|..+..+.+.+++++.-. .+....|++.||.|+|||++.- .++. .... ..+|.-+.....
T Consensus 26 l~g~~~~~~~l~~~lkqt~~------------~gEsnsviiigprgsgkT~li~~~Ls~-~q~~----~E~~l~v~Lng~ 88 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTIL------------HGESNSVIIIGPRGSGKTILIDTRLSD-IQEN----GENFLLVRLNGE 88 (408)
T ss_pred eeehHHHHHHHHHHHHHHHH------------hcCCCceEEEccCCCCceEeeHHHHhh-HHhc----CCeEEEEEECcc
Confidence 67777777777777765532 3456789999999999997643 3333 2221 114433332221
Q ss_pred c---------------------ccccCCchhHHHHHHHHc-------cCcEEE-EcCcccccc-CCCCCCchhHHHHHHH
Q 013316 250 V---------------------GEFVGHTGPKTRRRIKEA-------EGGILF-VDEAYRLIP-MQKADDKDYGIEALEE 299 (445)
Q Consensus 250 ~---------------------~~~~g~~~~~~~~~~~~a-------~~~il~-lDEid~l~~-~~~~~~~~~~~~~~~~ 299 (445)
. .+-+|-...++.+++..- .+.|+| +||||..++ .|| -.+-.
T Consensus 89 ~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQ--------tllYn 160 (408)
T KOG2228|consen 89 LQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQ--------TLLYN 160 (408)
T ss_pred chhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhh--------HHHHH
Confidence 1 112344445555554322 123555 568999886 222 22333
Q ss_pred HHhhcc--CCcEEEEEecCchhHHHHHhhCcccccccc-cceeC-CCCCHHHHHHHHHHHHh
Q 013316 300 IMSVMD--GGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHF-NDFNSEELAKILHIKMN 357 (445)
Q Consensus 300 ll~~~~--~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~-~~i~~-~~~~~~~~~~il~~~l~ 357 (445)
|...-+ ...+++|+.|++-+....+ -....+||. ++|.| |..+-++...+++..+.
T Consensus 161 lfDisqs~r~Piciig~Ttrld~lE~L--EKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 161 LFDISQSARAPICIIGVTTRLDILELL--EKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred HHHHHhhcCCCeEEEEeeccccHHHHH--HHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 333333 3568899887765444332 356788997 44544 44557888888887764
No 362
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.24 E-value=4.2e-06 Score=71.36 Aligned_cols=104 Identities=22% Similarity=0.275 Sum_probs=59.1
Q ss_pred eEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccc----------------------cccCCc-hhHH----
Q 013316 209 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----------------------EFVGHT-GPKT---- 261 (445)
Q Consensus 209 vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~----------------------~~~g~~-~~~~---- 261 (445)
++++||||+|||+++..++......+ .+++.++...... .+.... ....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~----~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKG----GKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKA 77 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcC----CEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHH
Confidence 68999999999999999998876422 2444444432111 000111 1111
Q ss_pred HHHHHHccCcEEEEcCccccccCCC---CCCchhHHHHHHHHHhhccCCcEEEEEecC
Q 013316 262 RRRIKEAEGGILFVDEAYRLIPMQK---ADDKDYGIEALEEIMSVMDGGKVVVIFAGY 316 (445)
Q Consensus 262 ~~~~~~a~~~il~lDEid~l~~~~~---~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~ 316 (445)
..........+++|||+..+.+... .+......+.+..|.....+..+.+|+++.
T Consensus 78 ~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~ 135 (165)
T cd01120 78 ERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQ 135 (165)
T ss_pred HHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 1222333568999999998875321 111223345566666666655666666544
No 363
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.23 E-value=4e-05 Score=74.96 Aligned_cols=178 Identities=15% Similarity=0.123 Sum_probs=89.8
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCch------hHHHHHHHHc------------
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG------PKTRRRIKEA------------ 268 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~------~~~~~~~~~a------------ 268 (445)
.-+||+||+||||||+.+.++++++....--..|+.......+...-.+.+. ......+..+
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~ 190 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDD 190 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccc
Confidence 4578899999999999999999987521100111111112222222122110 0111111111
Q ss_pred ---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhc-cCC--cEEEEEecCch-----hHHHHHhhCcccccccccc
Q 013316 269 ---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM-DGG--KVVVIFAGYSE-----PMKRVIASNEGFCRRVTKF 337 (445)
Q Consensus 269 ---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~-~~~--~~~~i~a~~~~-----~~~~~~~~~~~l~~R~~~~ 337 (445)
.+.+|++||+=..+-. + ..+.+...|+.+ ..+ .+++|++.... ....+ ..+=...-|+ ..
T Consensus 191 ~~~~~~liLveDLPn~~~~------d-~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf-~~d~q~~~ri-~~ 261 (634)
T KOG1970|consen 191 LRTDKKLILVEDLPNQFYR------D-DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLF-PKDIQEEPRI-SN 261 (634)
T ss_pred cccCceEEEeeccchhhhh------h-hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhc-hhhhhhccCc-ce
Confidence 1258999998554432 1 223444433333 222 24454443221 11111 0011112244 77
Q ss_pred eeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchh
Q 013316 338 FHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL 399 (445)
Q Consensus 338 i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~ 399 (445)
|.|.+..+.=+..-|..++......... ++ +...+....+-..++||+|.+.|--+
T Consensus 262 IsFNPIa~T~MKK~L~ric~~e~~~~s~--~k----~~~~~~v~~i~~~s~GDIRsAInsLQ 317 (634)
T KOG1970|consen 262 ISFNPIAPTIMKKFLKRICRIEANKKSG--IK----VPDTAEVELICQGSGGDIRSAINSLQ 317 (634)
T ss_pred EeecCCcHHHHHHHHHHHHHHhcccccC--Cc----CchhHHHHHHHHhcCccHHHHHhHhh
Confidence 8999999999999998888876543332 11 22233344555666788887766433
No 364
>PHA00729 NTP-binding motif containing protein
Probab=98.23 E-value=4.3e-06 Score=74.16 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.5
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
..+++|+|+||||||++|.+|+..+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34899999999999999999999875
No 365
>PRK14700 recombination factor protein RarA; Provisional
Probab=98.23 E-value=3.2e-06 Score=77.41 Aligned_cols=113 Identities=12% Similarity=0.119 Sum_probs=81.4
Q ss_pred hhccCCcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHH
Q 013316 302 SVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAA 381 (445)
Q Consensus 302 ~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 381 (445)
..+++|.+++|+|||.+|.-.+ +|+|++|+ +++.|.+++.+++..++++.+.... .++ .....++++++.
T Consensus 2 p~vE~G~i~LIGATTENP~f~v---n~ALlSR~-~v~~l~~L~~~di~~il~ral~~~~-~~~----~~~~~i~~~al~- 71 (300)
T PRK14700 2 PYVESGKIILIGATTENPTYYL---NDALVSRL-FILRLKRLSLVATQKLIEKALSQDE-VLA----KHKFKIDDGLYN- 71 (300)
T ss_pred CCccCCcEEEEeecCCCcccee---cHhhhhhh-heeeecCCCHHHHHHHHHHHHHhhh-ccC----CcCCCcCHHHHH-
Confidence 4578899999999999998765 99999999 9999999999999999999987521 122 113356777877
Q ss_pred HHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316 382 LIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 439 (445)
Q Consensus 382 ~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 439 (445)
.+...++||.|...| ++|.+.... ... +...||.+++++.++.
T Consensus 72 ~ia~~a~GDaR~aLN------~LE~a~~~~--------~~~-~~~~it~~~~~~~~~~ 114 (300)
T PRK14700 72 AMHNYNEGDCRKILN------LLERMFLIS--------TRG-DEIYLNKELFDQAVGE 114 (300)
T ss_pred HHHHhcCCHHHHHHH------HHHHHHhhc--------ccc-CCCccCHHHHHHHHhH
Confidence 555778777777666 455542110 011 1124888998888764
No 366
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.19 E-value=2e-05 Score=76.12 Aligned_cols=57 Identities=26% Similarity=0.439 Sum_probs=41.0
Q ss_pred hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
.|.|..++|+.+.= +++.-.++.+.-.+.....-+|||.|.|||-|+-+.+.+-+-.
T Consensus 332 SIfG~~DiKkAiaC----lLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs 388 (729)
T KOG0481|consen 332 SIFGHEDIKKAIAC----LLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS 388 (729)
T ss_pred hhcCchhHHHHHHH----HhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC
Confidence 38888888877663 3333345555444555567799999999999999998886543
No 367
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.18 E-value=2.2e-06 Score=89.09 Aligned_cols=126 Identities=21% Similarity=0.117 Sum_probs=101.4
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 013316 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (445)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpL 89 (445)
...|++-+|.++..++...+..++.-.+......+. +|...+|+ |..++++.+-+++.. +|..++.+|..|+|||
T Consensus 571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~-d~qgV~hf-ca~lg~ewA~ll~~~---~~~ai~i~D~~G~tpL 645 (975)
T KOG0520|consen 571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDR-DGQGVIHF-CAALGYEWAFLPISA---DGVAIDIRDRNGWTPL 645 (975)
T ss_pred CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcc-cCCChhhH-hhhcCCceeEEEEee---cccccccccCCCCccc
Confidence 447899999999999999999888643444444443 57778888 666778888888776 6788999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCc------ccccCCCChhhhhhcCCCChHHHHHHHhh
Q 013316 90 HMAAKNGCNEAAKLLLAHGAFIE------AKANEGKTPLDHLSNGPGSAKLRELLLWH 141 (445)
Q Consensus 90 h~A~~~g~~~~~~~Ll~~ga~~~------~~~~~g~tpl~~~a~~~~~~~i~~~ll~~ 141 (445)
|||+..|+..++..|++.|++.. .....|.|+- ..+..+++..+..+|.+.
T Consensus 646 ~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~-~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 646 HWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAA-DLARANGHKGIAGYLSEK 702 (975)
T ss_pred chHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchh-hhhhcccccchHHHHhhh
Confidence 99999999999999998888654 3345688998 778888999998888654
No 368
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.14 E-value=3.4e-05 Score=63.58 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=26.6
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 234 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~ 234 (445)
....+.++|+||+||||++..|+..+...+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 456899999999999999999999997754
No 369
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.13 E-value=4.2e-06 Score=80.87 Aligned_cols=92 Identities=22% Similarity=0.291 Sum_probs=80.9
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCc-CCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 013316 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLL-NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (445)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpL 89 (445)
....+-||+|+..|+-++|+++|...+..+ +..+ ..|.|+||-|+..++-.++++|++ .|+.+...|..|.||-
T Consensus 897 ~~~~sllh~a~~tg~~eivkyildh~p~elld~~d-e~get~lhkaa~~~~r~vc~~lvd----agasl~ktd~kg~tp~ 971 (1004)
T KOG0782|consen 897 PDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMAD-ETGETALHKAACQRNRAVCQLLVD----AGASLRKTDSKGKTPQ 971 (1004)
T ss_pred cchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHh-hhhhHHHHHHHHhcchHHHHHHHh----cchhheecccCCCChH
Confidence 457889999999999999999998776644 4445 489999999999999999999999 5899999999999999
Q ss_pred HHHHHcCCHHHHHHHHhc
Q 013316 90 HMAAKNGCNEAAKLLLAH 107 (445)
Q Consensus 90 h~A~~~g~~~~~~~Ll~~ 107 (445)
.-|-..|+.+.+.||-..
T Consensus 972 eraqqa~d~dlaayle~r 989 (1004)
T KOG0782|consen 972 ERAQQAGDPDLAAYLESR 989 (1004)
T ss_pred HHHHhcCCchHHHHHhhh
Confidence 999999999999988753
No 370
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.09 E-value=5.3e-06 Score=74.66 Aligned_cols=65 Identities=29% Similarity=0.236 Sum_probs=49.0
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc--cCcEEEEcCcccccc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIP 283 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a--~~~il~lDEid~l~~ 283 (445)
..+-.++||+|||||.+++.+|+.+++ +++.++|++.. +...+.++|.=+ .|+-+.+||++++..
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~-------~~~vfnc~~~~------~~~~l~ril~G~~~~GaW~cfdefnrl~~ 98 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGR-------FVVVFNCSEQM------DYQSLSRILKGLAQSGAWLCFDEFNRLSE 98 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT---------EEEEETTSSS-------HHHHHHHHHHHHHHT-EEEEETCCCSSH
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCC-------eEEEecccccc------cHHHHHHHHHHHhhcCchhhhhhhhhhhH
Confidence 346678999999999999999999998 99999998753 334455555322 578999999999875
No 371
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.08 E-value=1.3e-05 Score=63.17 Aligned_cols=82 Identities=17% Similarity=0.162 Sum_probs=47.9
Q ss_pred eEeecCCCCchhHHHHHHHHHHHHcCCCC-CCCeEEeecccccccccCCchhHHHHHHHHc-cCcEEEEcCccccccCCC
Q 013316 209 MAFLGNPGTGKTMVARILGRLLYMVGILP-TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQK 286 (445)
Q Consensus 209 vll~Gp~GtGKt~~A~~la~~~~~~~~~~-~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~l~~~~~ 286 (445)
|.|+||||+|||++|+.|+..+....... ...+...++.+ +.++-- ...++++||+.......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~--------------~~w~gY~~q~vvi~DD~~~~~~~~- 65 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGD--------------KFWDGYQGQPVVIIDDFGQDNDGY- 65 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCcc--------------chhhccCCCcEEEEeecCcccccc-
Confidence 57999999999999999999887632111 12333222211 122221 33689999996665421
Q ss_pred CCCchhHHHHHHHHHhhccCCcEEE
Q 013316 287 ADDKDYGIEALEEIMSVMDGGKVVV 311 (445)
Q Consensus 287 ~~~~~~~~~~~~~ll~~~~~~~~~~ 311 (445)
.......+++.++...+.+
T Consensus 66 ------~~~~~~~l~~l~s~~~~~~ 84 (107)
T PF00910_consen 66 ------NYSDESELIRLISSNPFQP 84 (107)
T ss_pred ------chHHHHHHHHHHhcCCccc
Confidence 1124556777776544333
No 372
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.08 E-value=1.4e-05 Score=70.60 Aligned_cols=101 Identities=22% Similarity=0.276 Sum_probs=57.1
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc----ccccCCchhHHHHHHH------------Hcc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVGHTGPKTRRRIK------------EAE 269 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~----~~~~g~~~~~~~~~~~------------~a~ 269 (445)
....++.||||||||++.+.+...+...+. .++-+.++.-. .+-.|.....+.+.+. ...
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~----~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~ 93 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGK----RVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPK 93 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT------EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCC----eEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCc
Confidence 356888999999999999999988876432 55555554311 1111111122222221 123
Q ss_pred CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHH
Q 013316 270 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMK 321 (445)
Q Consensus 270 ~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~ 321 (445)
..+|+|||+..+.. ..+..|+..+......+|+.+.+....
T Consensus 94 ~~vliVDEasmv~~-----------~~~~~ll~~~~~~~~klilvGD~~QL~ 134 (196)
T PF13604_consen 94 KDVLIVDEASMVDS-----------RQLARLLRLAKKSGAKLILVGDPNQLP 134 (196)
T ss_dssp TSEEEESSGGG-BH-----------HHHHHHHHHS-T-T-EEEEEE-TTSHH
T ss_pred ccEEEEecccccCH-----------HHHHHHHHHHHhcCCEEEEECCcchhc
Confidence 37999999966654 667778888877444555555444443
No 373
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.06 E-value=0.00017 Score=69.18 Aligned_cols=129 Identities=15% Similarity=0.131 Sum_probs=75.8
Q ss_pred CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhC----------cc-cccccccce
Q 013316 270 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASN----------EG-FCRRVTKFF 338 (445)
Q Consensus 270 ~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~----------~~-l~~R~~~~i 338 (445)
.-|+||||+|++.+ +...++++.+-..++-.++++|.+.+.......+... .. |..-|+..+
T Consensus 173 ~iViiIDdLDR~~~-------~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~ 245 (325)
T PF07693_consen 173 RIVIIIDDLDRCSP-------EEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPF 245 (325)
T ss_pred eEEEEEcchhcCCc-------HHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEE
Confidence 37999999999976 3334555555566666888888887766655443322 12 223457788
Q ss_pred eCCCCCHHHHHHHHHHHHhcccccccccccccCCccc------HHHHHHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316 339 HFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCS------MDAIAALIEKETTEKQRREMNGGLVDPMLVNA 407 (445)
Q Consensus 339 ~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~ 407 (445)
.+|+++..++...+...+.+.......... ...+. ....................|.|.++.++...
T Consensus 246 ~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~npR~ikr~iN~~ 318 (325)
T PF07693_consen 246 SLPPPSPSDLERYLNELLESLESETNESDD--IETLSNSASNENLRIDEILNDIIDSIDFSIGNPRDIKRFINSL 318 (325)
T ss_pred EeCCCCHHHHHHHHHHHHHHhhhccccccc--hhhhhhcchhhhhhHHHHHHHHHHhhhhcCCCHHHHHHHHHHH
Confidence 999999999998888876654322111000 00000 00112223333322234567888888888654
No 374
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.99 E-value=0.00017 Score=64.18 Aligned_cols=173 Identities=19% Similarity=0.226 Sum_probs=94.9
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc-----ccccc----CCchhHHH--------H---HH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL-----VGEFV----GHTGPKTR--------R---RI 265 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l-----~~~~~----g~~~~~~~--------~---~~ 265 (445)
..-+.++|+.|||||++.|++...+....+ ..+.++...+ ...++ +.-...+. . .+
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~d~~----~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNEDQV----AVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALV 126 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCce----EEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Confidence 346778999999999999977766654222 2223333222 11111 11001111 1 12
Q ss_pred HHcc-CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcc---ccccccccee
Q 013316 266 KEAE-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEG---FCRRVTKFFH 339 (445)
Q Consensus 266 ~~a~-~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~---l~~R~~~~i~ 339 (445)
..-+ +-++++||++.+.... .+.+..|...-++ +..-++..+.+....++ ..|. +..|++..|.
T Consensus 127 ~~g~r~v~l~vdEah~L~~~~--------le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~l--r~~~l~e~~~R~~ir~~ 196 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLNDSA--------LEALRLLTNLEEDSSKLLSIVLIGQPKLRPRL--RLPVLRELEQRIDIRIE 196 (269)
T ss_pred HhCCCCeEEeehhHhhhChhH--------HHHHHHHHhhcccccCceeeeecCCcccchhh--chHHHHhhhheEEEEEe
Confidence 2223 3799999998887611 1333333333222 33345555544433322 1233 3459987799
Q ss_pred CCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHH
Q 013316 340 FNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNA 407 (445)
Q Consensus 340 ~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~ 407 (445)
+++++.++....+++.++.-. ...+-++.+++.+ +...+.+ -.+.+.+++..|
T Consensus 197 l~P~~~~~t~~yl~~~Le~a~--------~~~~l~~~~a~~~-i~~~sqg------~P~lin~~~~~A 249 (269)
T COG3267 197 LPPLTEAETGLYLRHRLEGAG--------LPEPLFSDDALLL-IHEASQG------IPRLINNLATLA 249 (269)
T ss_pred cCCcChHHHHHHHHHHHhccC--------CCcccCChhHHHH-HHHHhcc------chHHHHHHHHHH
Confidence 999999999999999998752 2234455566553 3344422 244556666666
No 375
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.99 E-value=2.1e-05 Score=72.75 Aligned_cols=69 Identities=25% Similarity=0.347 Sum_probs=49.5
Q ss_pred hHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChh
Q 013316 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122 (445)
Q Consensus 50 tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl 122 (445)
.-|..||+.|+.+.|++|++. |.+||..|.+...||.+|+..||.++|++|+++||-+..-.-.|.-.+
T Consensus 38 ~elceacR~GD~d~v~~LVet----gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~ 106 (516)
T KOG0511|consen 38 GELCEACRAGDVDRVRYLVET----GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH 106 (516)
T ss_pred HHHHHHhhcccHHHHHHHHHh----CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh
Confidence 356677777777777777773 677777777777777777777777777777777777665555666554
No 376
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.98 E-value=0.00023 Score=70.12 Aligned_cols=31 Identities=32% Similarity=0.524 Sum_probs=26.6
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVG 234 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~ 234 (445)
..|..++|+|++|+||||+|..+|..+...+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g 123 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKG 123 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 3577899999999999999999999887643
No 377
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.95 E-value=0.0008 Score=63.32 Aligned_cols=131 Identities=21% Similarity=0.264 Sum_probs=78.9
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccc----------c-----ccCC----chhHHH--
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----------E-----FVGH----TGPKTR-- 262 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~----------~-----~~g~----~~~~~~-- 262 (445)
..|.++.+||-+|||||.+.|.+-+.++. +.+.++|-+... + .-|. ...++.
T Consensus 28 ~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-------~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~ 100 (438)
T KOG2543|consen 28 TIPSIVHIYGHSGTGKTYLVRQLLRKLNL-------ENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDF 100 (438)
T ss_pred ccceeEEEeccCCCchhHHHHHHHhhcCC-------cceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHH
Confidence 35778899999999999999999888755 455555443110 0 1111 111221
Q ss_pred -HHHHH---c----cCcEEEEcCccccccCCCCCCchhHHHHHH---HHHhhccCCcEEEEEecCchhHHHHHhhCcccc
Q 013316 263 -RRIKE---A----EGGILFVDEAYRLIPMQKADDKDYGIEALE---EIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFC 331 (445)
Q Consensus 263 -~~~~~---a----~~~il~lDEid~l~~~~~~~~~~~~~~~~~---~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~ 331 (445)
..|.+ + +.-.|++|.+|.+-. ++.-.+. .|...++...+.+|.....-+..... -.
T Consensus 101 i~~l~q~~~~t~~d~~~~liLDnad~lrD--------~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~-----n~ 167 (438)
T KOG2543|consen 101 IYLLVQWPAATNRDQKVFLILDNADALRD--------MDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLI-----NT 167 (438)
T ss_pred HHHHHhhHHhhccCceEEEEEcCHHhhhc--------cchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhc-----cc
Confidence 23333 1 246899999999963 2223344 44455566677777664443333211 01
Q ss_pred ccc-ccceeCCCCCHHHHHHHHHH
Q 013316 332 RRV-TKFFHFNDFNSEELAKILHI 354 (445)
Q Consensus 332 ~R~-~~~i~~~~~~~~~~~~il~~ 354 (445)
+-+ ..+++||.|+.+|...|+.+
T Consensus 168 g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 168 GTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred CCCCceEEecCCCCHHHHHHHHhc
Confidence 223 27789999999999999864
No 378
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.95 E-value=0.0001 Score=63.89 Aligned_cols=136 Identities=15% Similarity=0.158 Sum_probs=66.1
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCC
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKA 287 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~ 287 (445)
-.+|+||+|||||.+|-.+|+..+. +++..+.--...++.-.+++....-+...+. +||||- -...+
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~-------pvI~~Driq~y~~l~v~Sgrp~~~el~~~~R--iyL~~r--~l~~G-- 69 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGA-------PVISLDRIQCYPELSVGSGRPTPSELKGTRR--IYLDDR--PLSDG-- 69 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH---------EEEEE-SGGG-GGGTTTTT---SGGGTT-EE--EES------GGG---
T ss_pred EEEEECCCCCChhHHHHHHHHHhCC-------CEEEecceecccccccccCCCCHHHHcccce--eeeccc--cccCC--
Confidence 3678999999999999999999988 8887776554444322244333222322232 777753 11111
Q ss_pred CCchhHHHHHHHHHhhccC---CcEEEEEecCchhHHHHHhhCcccccccc-cceeCCCCCHHHHHHHHHHHHhcc
Q 013316 288 DDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQ 359 (445)
Q Consensus 288 ~~~~~~~~~~~~ll~~~~~---~~~~~i~a~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~ 359 (445)
.-...++.+.|+..+++ .+.+++=.++-.....+. .++-....|. .+..++.++.+--..-+...++++
T Consensus 70 --~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~-~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~M 142 (233)
T PF01745_consen 70 --IINAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMA-QDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQM 142 (233)
T ss_dssp --S--HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHH-H-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHH
T ss_pred --CcCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHH-hcccccCCCeEEEEEEECCChHHHHHHHHHHHHHh
Confidence 11122334444444432 445555555555555553 3444434554 455888888888777777777765
No 379
>PRK04296 thymidine kinase; Provisional
Probab=97.94 E-value=2.8e-05 Score=68.22 Aligned_cols=26 Identities=12% Similarity=-0.114 Sum_probs=21.7
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHHc
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYMV 233 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~~ 233 (445)
-.+++||||+|||+++..++..+...
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~ 29 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER 29 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc
Confidence 46789999999999998888877543
No 380
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.94 E-value=2.7e-05 Score=82.18 Aligned_cols=192 Identities=14% Similarity=0.149 Sum_probs=108.5
Q ss_pred HhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCe--eEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 169 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH--MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 169 ~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.++.|.......+.+|.+..+-+ ++-.+.......... ++++||||+|||+.|..+++.++. .+++.+.
T Consensus 320 k~~~~~~~~~~~~~~~l~~~k~~--~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~-------~v~E~Na 390 (871)
T KOG1968|consen 320 KALEGNASSSKKASKWLAKSKDK--EKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGF-------KVVEKNA 390 (871)
T ss_pred HhhhcccchhhhhhhHHHhhhcc--ccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhccc-------ceeecCc
Confidence 44666666555666665544221 111121111112222 689999999999999999999887 8889998
Q ss_pred cccccccc-----CC--chhHHHHHH-------HH-ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEE
Q 013316 247 TDLVGEFV-----GH--TGPKTRRRI-------KE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVV 311 (445)
Q Consensus 247 ~~l~~~~~-----g~--~~~~~~~~~-------~~-a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 311 (445)
++..+.+. |. +...+...+ .. ....||++||+|-+.. . .+..+.++...+....+-+
T Consensus 391 s~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~-------dRg~v~~l~~l~~ks~~Pi 462 (871)
T KOG1968|consen 391 SDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-E-------DRGGVSKLSSLCKKSSRPL 462 (871)
T ss_pred cccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-h-------hhhhHHHHHHHHHhccCCe
Confidence 87665532 21 122222222 00 1235999999999886 1 1123444444444433333
Q ss_pred EEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhh
Q 013316 312 IFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 391 (445)
Q Consensus 312 i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 391 (445)
|++.+....- ......|-+.-++|+.|+.+.+..-+...+.... + .++.+.+..++... ++|+
T Consensus 463 v~~cndr~~p-----~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~-------~----ki~~~~l~~~s~~~-~~Di 525 (871)
T KOG1968|consen 463 VCTCNDRNLP-----KSRALSRACSDLRFSKPSSELIRSRIMSICKSEG-------I----KISDDVLEEISKLS-GGDI 525 (871)
T ss_pred EEEecCCCCc-----cccchhhhcceeeecCCcHHHHHhhhhhhhcccc-------e----ecCcHHHHHHHHhc-ccCH
Confidence 3332221110 1111224346789999999999888888777642 2 35556777666544 3444
Q ss_pred hcc
Q 013316 392 RRE 394 (445)
Q Consensus 392 ~~~ 394 (445)
|.-
T Consensus 526 R~~ 528 (871)
T KOG1968|consen 526 RQI 528 (871)
T ss_pred HHH
Confidence 433
No 381
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=5.6e-05 Score=77.43 Aligned_cols=152 Identities=17% Similarity=0.213 Sum_probs=103.1
Q ss_pred HHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-----------------------cEEEEEecCch
Q 013316 262 RRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSE 318 (445)
Q Consensus 262 ~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------------------~~~~i~a~~~~ 318 (445)
...+.+|.+|||||||+..|.. ..++.+|+.|... ++.+|++++..
T Consensus 218 pGaVHkAngGVLiIdei~lL~~-----------~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~ 286 (647)
T COG1067 218 PGAVHKANGGVLIIDEIGLLAQ-----------PLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNRE 286 (647)
T ss_pred CcccccccCcEEEEEhhhhhCc-----------HHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHH
Confidence 3478889999999999988886 5566666666432 36888898888
Q ss_pred hHHHHHhhCcccccccccceeC--CCC-CHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHH---hhh
Q 013316 319 PMKRVIASNEGFCRRVTKFFHF--NDF-NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE---KQR 392 (445)
Q Consensus 319 ~~~~~~~~~~~l~~R~~~~i~~--~~~-~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~ 392 (445)
.+..+...++.++.-|....+| +.| +++.+...++.+.+......+ -+.++.+++..++...... ..+
T Consensus 287 ~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~------ip~~~~~Av~~li~~a~R~Ag~~~~ 360 (647)
T COG1067 287 DLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELARDGN------IPHLDKDAVEELIREAARRAGDQNK 360 (647)
T ss_pred HHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCC------CCCCCHHHHHHHHHHHHHhccccce
Confidence 7777644444444434333444 445 578888888887776643311 3567888888776554432 234
Q ss_pred cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316 393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 439 (445)
Q Consensus 393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 439 (445)
.+.+.|++.+++..| ...+..++...|+.+||++|++.
T Consensus 361 Ltl~~rdl~~lv~~A---------~~ia~~~~~~~I~ae~Ve~a~~~ 398 (647)
T COG1067 361 LTLRLRDLGNLVREA---------GDIAVSEGRKLITAEDVEEALQK 398 (647)
T ss_pred eccCHHHHHHHHHHh---------hHHHhcCCcccCcHHHHHHHHHh
Confidence 568899999999876 22223334557999999999986
No 382
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.90 E-value=5.5e-05 Score=66.23 Aligned_cols=24 Identities=33% Similarity=0.299 Sum_probs=20.5
Q ss_pred eEeecCCCCchhHHHHHHHHHHHH
Q 013316 209 MAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 209 vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
++++||||||||+++..++.....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~ 25 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA 25 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999888776544
No 383
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.89 E-value=9.9e-06 Score=84.76 Aligned_cols=88 Identities=34% Similarity=0.444 Sum_probs=77.5
Q ss_pred CCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhh
Q 013316 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLS 126 (445)
Q Consensus 47 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a 126 (445)
.|.++||.|+.++..-++++|+. +|+++|..|..|.||||.+...|+...+..|+++|++.++.+..|.+|++++.
T Consensus 655 ~~~s~lh~a~~~~~~~~~e~ll~----~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~ 730 (785)
T KOG0521|consen 655 IGCSLLHVAVGTGDSGAVELLLQ----NGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAM 730 (785)
T ss_pred cccchhhhhhccchHHHHHHHHh----cCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHh
Confidence 47899999999999999999999 48899999999999999999999999999999999999999999999995544
Q ss_pred cCCCChHHHHHHH
Q 013316 127 NGPGSAKLRELLL 139 (445)
Q Consensus 127 ~~~~~~~i~~~ll 139 (445)
.. .+.+++-++.
T Consensus 731 ~~-~~~d~~~l~~ 742 (785)
T KOG0521|consen 731 EA-ANADIVLLLR 742 (785)
T ss_pred hh-ccccHHHHHh
Confidence 44 6666665553
No 384
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.88 E-value=0.00029 Score=78.87 Aligned_cols=51 Identities=22% Similarity=0.344 Sum_probs=38.0
Q ss_pred HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+++++|.+...+++..++. ........+-++||+|+||||+|++++..+..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~--------------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLH--------------LESEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred cccccchHHHHHHHHHHHc--------------cccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 4568898887777776532 12234456789999999999999999887754
No 385
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.88 E-value=0.00019 Score=67.47 Aligned_cols=134 Identities=17% Similarity=0.262 Sum_probs=68.2
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc------ccc---ccCC---------chhHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL------VGE---FVGH---------TGPKTRRRI 265 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l------~~~---~~g~---------~~~~~~~~~ 265 (445)
.....+.++|++|+|||++|+.+++........ ..++.++.+.- ... .++. ......+.+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f--~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l 94 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRF--DGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQL 94 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCC--TEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 345678899999999999999999875432222 12233333321 000 1111 112222222
Q ss_pred HH---ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeC
Q 013316 266 KE---AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHF 340 (445)
Q Consensus 266 ~~---a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~ 340 (445)
.+ .+..+|+||+++... ....+...+.. ....+|.+|....... .+. .-...+.+
T Consensus 95 ~~~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~~~kilvTTR~~~v~~------~~~-~~~~~~~l 154 (287)
T PF00931_consen 95 RELLKDKRCLLVLDDVWDEE-------------DLEELREPLPSFSSGSKILVTTRDRSVAG------SLG-GTDKVIEL 154 (287)
T ss_dssp HHHHCCTSEEEEEEEE-SHH-------------HH-------HCHHSS-EEEEEESCGGGGT------THH-SCEEEEEC
T ss_pred hhhhccccceeeeeeecccc-------------ccccccccccccccccccccccccccccc------ccc-cccccccc
Confidence 22 246999999985443 22223322221 2344555554432221 011 11367899
Q ss_pred CCCCHHHHHHHHHHHHhcc
Q 013316 341 NDFNSEELAKILHIKMNNQ 359 (445)
Q Consensus 341 ~~~~~~~~~~il~~~l~~~ 359 (445)
+.++.+|-.+++.......
T Consensus 155 ~~L~~~ea~~L~~~~~~~~ 173 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRK 173 (287)
T ss_dssp SS--HHHHHHHHHHHHTSH
T ss_pred ccccccccccccccccccc
Confidence 9999999999999887654
No 386
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.87 E-value=0.00012 Score=70.92 Aligned_cols=100 Identities=24% Similarity=0.333 Sum_probs=59.4
Q ss_pred hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316 170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 249 (445)
Q Consensus 170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l 249 (445)
+|.|.+++|+.|.=++-.. +.+.+..| +......+|++.|.||+-|+-+.+.|.+...+ + -+..-..|
T Consensus 343 EIyGheDVKKaLLLlLVGg--vd~~~~dG--MKIRGdINicLmGDPGVAKSQLLkyi~rlapR-g-----vYTTGrGS-- 410 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGG--VDKSPGDG--MKIRGDINICLMGDPGVAKSQLLKYISRLAPR-G-----VYTTGRGS-- 410 (721)
T ss_pred hhccchHHHHHHHHHhhCC--CCCCCCCC--ceeecceeEEecCCCchhHHHHHHHHHhcCcc-c-----ceecCCCC--
Confidence 5899999988776432211 01111122 22344568999999999999999999887643 1 11111111
Q ss_pred cccccCCchhHHHH-----------HHHHccCcEEEEcCcccccc
Q 013316 250 VGEFVGHTGPKTRR-----------RIKEAEGGILFVDEAYRLIP 283 (445)
Q Consensus 250 ~~~~~g~~~~~~~~-----------~~~~a~~~il~lDEid~l~~ 283 (445)
.-+|-+..-+++ .+-.|.+||-.|||+|+...
T Consensus 411 --SGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e 453 (721)
T KOG0482|consen 411 --SGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDE 453 (721)
T ss_pred --CccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhh
Confidence 122222222221 33456789999999999975
No 387
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.87 E-value=3.8e-05 Score=73.99 Aligned_cols=82 Identities=21% Similarity=0.266 Sum_probs=51.8
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHH-HHcCCCCCCCeEEeecccccccccCCchhHHHHHHH-HccCcEEEEcCccccc
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLL-YMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-EAEGGILFVDEAYRLI 282 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~-~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~-~a~~~il~lDEid~l~ 282 (445)
...|+++.||+|||||.+|.+++... ...+ . .++.+.|...+ .. +.+. -+..-+|+|||+..+.
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG-----~--f~T~a~Lf~~L----~~---~~lg~v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG-----G--TITVAKLFYNI----ST---RQIGLVGRWDVVAFDEVATLK 273 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC-----C--cCcHHHHHHHH----HH---HHHhhhccCCEEEEEcCCCCc
Confidence 45799999999999999999998873 2222 1 22333333221 11 2222 2355799999998865
Q ss_pred cCCCCCCchhHHHHHHHHHhhccCC
Q 013316 283 PMQKADDKDYGIEALEEIMSVMDGG 307 (445)
Q Consensus 283 ~~~~~~~~~~~~~~~~~ll~~~~~~ 307 (445)
-.+. .+.+..|...|+++
T Consensus 274 ~~~~-------~~~v~imK~yMesg 291 (449)
T TIGR02688 274 FAKP-------KELIGILKNYMESG 291 (449)
T ss_pred CCch-------HHHHHHHHHHHHhC
Confidence 4322 35677777778763
No 388
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.83 E-value=0.0002 Score=70.94 Aligned_cols=104 Identities=22% Similarity=0.291 Sum_probs=58.9
Q ss_pred hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC------CeEE
Q 013316 170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------RVTE 243 (445)
Q Consensus 170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~------~~~~ 243 (445)
.|.|...+|..+.=.+ +.-..+..+.+.......++||.|.|||||+-+.|.+++...+. ++.++ .+..
T Consensus 450 sIyGh~~VK~AvAlaL----fGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RA-V~tTGqGASavGLTa 524 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALAL----FGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRA-VFTTGQGASAVGLTA 524 (854)
T ss_pred hhhchHHHHHHHHHHH----hcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcce-eEeccCCccccceeE
Confidence 4788888887665321 11111112222223445699999999999999999999887651 11100 1111
Q ss_pred eeccc-ccccccCCchhHHHHHHHHccCcEEEEcCcccccc
Q 013316 244 VQRTD-LVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIP 283 (445)
Q Consensus 244 ~~~~~-l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~ 283 (445)
...-+ ...+|.=+.+ .+-.|.+||-+|||+|++..
T Consensus 525 ~v~KdPvtrEWTLEaG-----ALVLADkGvClIDEFDKMnd 560 (854)
T KOG0477|consen 525 YVRKDPVTREWTLEAG-----ALVLADKGVCLIDEFDKMND 560 (854)
T ss_pred EEeeCCccceeeeccC-----eEEEccCceEEeehhhhhcc
Confidence 00001 1222322222 34467889999999999975
No 389
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.80 E-value=0.00015 Score=66.77 Aligned_cols=165 Identities=10% Similarity=0.153 Sum_probs=88.9
Q ss_pred hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 013316 171 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 250 (445)
Q Consensus 171 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~ 250 (445)
++-.+++.+.|.+..+.+ ..+..|+|+.|.+|+||++++|..+...+. .++.+..+.-.
T Consensus 10 lVlf~~ai~hi~ri~RvL--------------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~-------~~~~i~~~~~y 68 (268)
T PF12780_consen 10 LVLFDEAIEHIARISRVL--------------SQPRGHALLVGVGGSGRQSLARLAAFICGY-------EVFQIEITKGY 68 (268)
T ss_dssp ----HHHHHHHHHHHHHH--------------CSTTEEEEEECTTTSCHHHHHHHHHHHTTE-------EEE-TTTSTTT
T ss_pred eeeHHHHHHHHHHHHHHH--------------cCCCCCeEEecCCCccHHHHHHHHHHHhcc-------ceEEEEeeCCc
Confidence 666777777777765544 345679999999999999999988877665 56655543211
Q ss_pred ccccCCchhHHHHHHHHc----cCcEEEEcCccccc-----------cCCCCC---CchhHHHHHHHHHhhc--------
Q 013316 251 GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLI-----------PMQKAD---DKDYGIEALEEIMSVM-------- 304 (445)
Q Consensus 251 ~~~~g~~~~~~~~~~~~a----~~~il~lDEid~l~-----------~~~~~~---~~~~~~~~~~~ll~~~-------- 304 (445)
+ ..+-...+++++..| ++.+++|+|-+-.. .++.-. ..+....+++.+....
T Consensus 69 ~--~~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~ 146 (268)
T PF12780_consen 69 S--IKDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDS 146 (268)
T ss_dssp H--HHHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SS
T ss_pred C--HHHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCc
Confidence 0 000123445555544 34677776643221 111100 1111122222222111
Q ss_pred ------------cCC-cEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcc
Q 013316 305 ------------DGG-KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 359 (445)
Q Consensus 305 ------------~~~-~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~ 359 (445)
.++ .+++++.........-....|+|..++ .+.-|.+-+.+.+..+...++++.
T Consensus 147 ~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~c-tIdW~~~W~~eaL~~Va~~~l~~~ 213 (268)
T PF12780_consen 147 RESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCC-TIDWFDPWPEEALLSVANKFLSDI 213 (268)
T ss_dssp HHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHS-EEEEEES--HHHHHHHHHHHCCHH
T ss_pred hHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcchhccc-EEEeCCcCCHHHHHHHHHHHHHhh
Confidence 111 234444443333333334469988876 677888889999999999998864
No 390
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.79 E-value=0.0025 Score=62.41 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=26.2
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVG 234 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~ 234 (445)
.+|..++|.|++|+||||++..+|..+...+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G 128 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKG 128 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 4466788999999999999999999886543
No 391
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.78 E-value=0.00012 Score=70.57 Aligned_cols=110 Identities=17% Similarity=0.158 Sum_probs=61.1
Q ss_pred CCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc--cccccccCCchhHHHHHHHH-ccC-cEEEEcCc
Q 013316 203 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT--DLVGEFVGHTGPKTRRRIKE-AEG-GILFVDEA 278 (445)
Q Consensus 203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~--~l~~~~~g~~~~~~~~~~~~-a~~-~il~lDEi 278 (445)
...+.++.|+||+|+|||++.-.+...+.... -...+|...-.. .-+..+.|. ...+..+.++ +.+ -+|+|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~-k~R~HFh~Fm~~vh~~l~~~~~~-~~~l~~va~~l~~~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKR-KRRVHFHEFMLDVHSRLHQLRGQ-DDPLPQVADELAKESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccc-cccccccHHHHHHHHHHHHHhCC-CccHHHHHHHHHhcCCEEEEeee
Confidence 45788999999999999999988887764311 011122111110 000111121 1112222222 233 49999998
Q ss_pred cccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHH
Q 013316 279 YRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKR 322 (445)
Q Consensus 279 d~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~ 322 (445)
+---. + ..-++..|+..+=...+++|+++|..|.+.
T Consensus 137 ~V~Di------a--DAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 137 QVTDI------A--DAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred eccch------h--HHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 54432 1 124456666666666788888877776653
No 392
>PRK10536 hypothetical protein; Provisional
Probab=97.78 E-value=0.0001 Score=66.62 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.3
Q ss_pred CeeEeecCCCCchhHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
..+++.||+|||||++|.+++...
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999853
No 393
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.77 E-value=0.00013 Score=63.02 Aligned_cols=23 Identities=39% Similarity=0.754 Sum_probs=21.4
Q ss_pred eeEeecCCCCchhHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
.++|.||||+||||+|+.|++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999984
No 394
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.77 E-value=7.7e-05 Score=66.40 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.7
Q ss_pred CCCeeEeecCCCCchhHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILG 227 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la 227 (445)
.+..+||||+||||||++|+.++
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcC
Confidence 45679999999999999999986
No 395
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.76 E-value=9.1e-05 Score=62.26 Aligned_cols=70 Identities=19% Similarity=0.148 Sum_probs=59.5
Q ss_pred CCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCC-cccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 013316 37 PSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK-VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI 111 (445)
Q Consensus 37 ~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g-~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~ 111 (445)
+.++|.+|. +||||++.|+..|..+.+.||+.+ | +.|...|..|.+++.+|-..|..+.+..|.++-.+-
T Consensus 2 e~~in~rD~-fgWTalmcaa~eg~~eavsyllgr----g~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et 72 (223)
T KOG2384|consen 2 EGNINARDA-FGWTALMCAAMEGSNEAVSYLLGR----GVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET 72 (223)
T ss_pred CCCccchhh-hcchHHHHHhhhcchhHHHHHhcc----CcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence 356888887 699999999999999999999985 5 778888999999999999999999999998874443
No 396
>PF14516 AAA_35: AAA-like domain
Probab=97.75 E-value=0.0005 Score=65.94 Aligned_cols=139 Identities=19% Similarity=0.214 Sum_probs=81.7
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccccc------------------CC----------
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFV------------------GH---------- 256 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------g~---------- 256 (445)
+...+.+.||..+|||++...+.+.+...+. ..+.+++..+.+..+ +-
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~----~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~ 105 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGY----RCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDE 105 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCC----EEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHH
Confidence 4567899999999999999999888876443 455555554322100 10
Q ss_pred ---chhHHHHHHHH------ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-------CcEEEEEecCchhH
Q 013316 257 ---TGPKTRRRIKE------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-------GKVVVIFAGYSEPM 320 (445)
Q Consensus 257 ---~~~~~~~~~~~------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~i~a~~~~~~ 320 (445)
+.......|++ .++-||+|||||.+.... ....+.+..|-...+. .++.+|++......
T Consensus 106 ~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~-----~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~ 180 (331)
T PF14516_consen 106 EIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP-----QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDY 180 (331)
T ss_pred hcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCc-----chHHHHHHHHHHHHHhcccCcccceEEEEEecCcccc
Confidence 11122222322 245899999999998632 2222444333333222 34666666543322
Q ss_pred HHHHhhC-cccccccccceeCCCCCHHHHHHHHHHH
Q 013316 321 KRVIASN-EGFCRRVTKFFHFNDFNSEELAKILHIK 355 (445)
Q Consensus 321 ~~~~~~~-~~l~~R~~~~i~~~~~~~~~~~~il~~~ 355 (445)
. ....+ .++ .+...|.++.++.+|+.++++.+
T Consensus 181 ~-~~~~~~SPF--NIg~~i~L~~Ft~~ev~~L~~~~ 213 (331)
T PF14516_consen 181 I-ILDINQSPF--NIGQPIELPDFTPEEVQELAQRY 213 (331)
T ss_pred c-ccCCCCCCc--ccccceeCCCCCHHHHHHHHHhh
Confidence 2 11111 222 44578899999999999988765
No 397
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.75 E-value=4.4e-05 Score=61.88 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=24.5
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
..+++|++|-||||||+++..||..++-
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~ 33 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGL 33 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCC
Confidence 4568999999999999999999977654
No 398
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.73 E-value=5.7e-05 Score=77.22 Aligned_cols=120 Identities=21% Similarity=0.222 Sum_probs=86.1
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCC---CcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 013316 13 KPATIHGCAQSGDLLAFQRLLRENPS---LLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (445)
Q Consensus 13 ~~t~L~~A~~~g~~~~v~~ll~~~~~---~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpL 89 (445)
+.-....||..|+...|++.+..... ++|..|. .|+++||.|..+.|.+++++|++++ +.. ..+|
T Consensus 25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~-lGr~al~iai~nenle~~eLLl~~~------~~~-----gdAL 92 (822)
T KOG3609|consen 25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDP-LGRLALHIAIDNENLELQELLLDTS------SEE-----GDAL 92 (822)
T ss_pred hhHHHHHHHHcCChHHHHHHHHhccccccchhccCh-HhhhceecccccccHHHHHHHhcCc------ccc-----chHH
Confidence 34457789999999999999887544 6788886 7999999999999999999999862 111 1366
Q ss_pred HHHHHcCCHHHHHHHHhcCCCC----------cccccCCCChhhhhhcCCCChHHHHHHHhhhhhH
Q 013316 90 HMAAKNGCNEAAKLLLAHGAFI----------EAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQ 145 (445)
Q Consensus 90 h~A~~~g~~~~~~~Ll~~ga~~----------~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~ 145 (445)
.+|++.|..++|+.++.+-... ...-..+.||+ .+|+..++.+|+++|+..++..
T Consensus 93 L~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPl-iLAAh~NnyEil~~Ll~kg~~i 157 (822)
T KOG3609|consen 93 LLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPL-MLAAHLNNFEILQCLLTRGHCI 157 (822)
T ss_pred HHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHH-HHHHHhcchHHHHHHHHcCCCC
Confidence 6777777777777777542221 12223456777 7777777777777777776553
No 399
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.73 E-value=4.6e-05 Score=63.99 Aligned_cols=67 Identities=27% Similarity=0.399 Sum_probs=62.4
Q ss_pred CcccccccCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCcccccCCCChhhhhhcCCCChHHHHHHHhhh
Q 013316 75 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG-AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS 142 (445)
Q Consensus 75 g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~g-a~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~ 142 (445)
+.++|.+|.+|+||++.|+..|+.+.+.+|+.+| +.+...|..|.+++ .+|...+..+.+..|.+.-
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaa-qlaek~g~~~fvh~lfe~~ 69 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAA-QLAEKGGAQAFVHSLFEND 69 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHH-HHHHhcChHHHHHHHHHHh
Confidence 4578999999999999999999999999999999 89999999999999 8899999999999997764
No 400
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.72 E-value=5.9e-05 Score=75.32 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=42.3
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
-|+++.|++++++++.+.+...... + .....-++|.||||+|||++|+.|++.+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~g-------l---~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQG-------L---EEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHh-------c---CCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3567999999999988866433211 1 123457889999999999999999998865
No 401
>PRK10867 signal recognition particle protein; Provisional
Probab=97.72 E-value=0.00042 Score=68.17 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=25.2
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHc
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMV 233 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~ 233 (445)
.+|..++|.||+|+||||++..+|..+...
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 456678899999999999999999877653
No 402
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.0032 Score=61.20 Aligned_cols=78 Identities=13% Similarity=0.155 Sum_probs=46.5
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCC--CCCCCeEEeeccccc--------cc------ccCCchhHHHHHHHHc
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI--LPTDRVTEVQRTDLV--------GE------FVGHTGPKTRRRIKEA 268 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~--~~~~~~~~~~~~~l~--------~~------~~g~~~~~~~~~~~~a 268 (445)
.+..++|+||+|+||||++..+|..+..... -.+..++..++-... .. ...+....+.+.+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 4668999999999999999999987753210 011123333331100 11 1123445555555444
Q ss_pred -cCcEEEEcCccccc
Q 013316 269 -EGGILFVDEAYRLI 282 (445)
Q Consensus 269 -~~~il~lDEid~l~ 282 (445)
..-+|+||++....
T Consensus 253 ~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 253 KDFDLVLVDTIGKSP 267 (388)
T ss_pred CCCCEEEEcCCCCCc
Confidence 44799999997765
No 403
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.00066 Score=60.36 Aligned_cols=135 Identities=5% Similarity=-0.053 Sum_probs=89.5
Q ss_pred CCeeEeecCCC-CchhHHHHHHHHHHHHcCC--CCCCCeEEeeccccc---ccccCCchhHHHHHHHHc-------cCcE
Q 013316 206 PPHMAFLGNPG-TGKTMVARILGRLLYMVGI--LPTDRVTEVQRTDLV---GEFVGHTGPKTRRRIKEA-------EGGI 272 (445)
Q Consensus 206 ~~~vll~Gp~G-tGKt~~A~~la~~~~~~~~--~~~~~~~~~~~~~l~---~~~~g~~~~~~~~~~~~a-------~~~i 272 (445)
...-||.|..+ +||..++..+++.+....+ -....+..+.+..-. +..+ .-..+|++.+.. ...|
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I--~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNI--SIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcc--cHHHHHHHHHHHhhCcccCCcEE
Confidence 45689999997 9999999999988865322 011123333322100 0111 233444444322 3479
Q ss_pred EEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHH
Q 013316 273 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK 350 (445)
Q Consensus 273 l~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~ 350 (445)
++|+++|.+.. ++.+.||+.+++ ...++|+.+++... .-|.+++|| +.+.|+.|+..+..+
T Consensus 93 iII~~ae~mt~-----------~AANALLKtLEEPP~~t~fILit~~~~~-----LLpTIrSRC-q~i~~~~p~~~~~~e 155 (263)
T PRK06581 93 AIIYSAELMNL-----------NAANSCLKILEDAPKNSYIFLITSRAAS-----IISTIRSRC-FKINVRSSILHAYNE 155 (263)
T ss_pred EEEechHHhCH-----------HHHHHHHHhhcCCCCCeEEEEEeCChhh-----CchhHhhce-EEEeCCCCCHHHHHH
Confidence 99999999987 888999999997 44555554443222 158899999 999999999988888
Q ss_pred HHHHHHhcc
Q 013316 351 ILHIKMNNQ 359 (445)
Q Consensus 351 il~~~l~~~ 359 (445)
....++...
T Consensus 156 ~~~~~~~p~ 164 (263)
T PRK06581 156 LYSQFIQPI 164 (263)
T ss_pred HHHHhcccc
Confidence 888776543
No 404
>PHA02774 E1; Provisional
Probab=97.66 E-value=0.0011 Score=66.41 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=23.2
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
..++|+||||||||++|-+|.+.++
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999999874
No 405
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.65 E-value=3.6e-05 Score=62.16 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.8
Q ss_pred eEeecCCCCchhHHHHHHHHHHHH
Q 013316 209 MAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 209 vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+++.||||+||||+|+.|++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~ 25 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGF 25 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 689999999999999999998753
No 406
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.65 E-value=0.00064 Score=60.06 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.4
Q ss_pred CeeEeecCCCCchhHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
..++|.||+|+||||+.|.|+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 568899999999999999998755
No 407
>PRK08118 topology modulation protein; Reviewed
Probab=97.64 E-value=9.8e-05 Score=63.30 Aligned_cols=26 Identities=35% Similarity=0.669 Sum_probs=23.6
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
..|++.||||+||||+|+.|++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36899999999999999999998876
No 408
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.63 E-value=0.00014 Score=62.29 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.8
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+++|+|+||+||||+.+.+.+.+..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhc
Confidence 5899999999999999999999854
No 409
>PRK13695 putative NTPase; Provisional
Probab=97.62 E-value=0.00094 Score=57.72 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.0
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.++|.|++|+||||+++.++..+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999887653
No 410
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.62 E-value=0.00044 Score=75.61 Aligned_cols=133 Identities=17% Similarity=0.245 Sum_probs=83.9
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc------ccccc-cCCchhHH----HHHHHH-ccCcEE
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD------LVGEF-VGHTGPKT----RRRIKE-AEGGIL 273 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~------l~~~~-~g~~~~~~----~~~~~~-a~~~il 273 (445)
..++|+.|.||+|||++..++|...+. .++.++.|+ |.+.+ .++.+..+ ...+.. ..|+-+
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~-------kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WV 1615 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGK-------KLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWV 1615 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcC-------ceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEE
Confidence 468999999999999999999999877 788888775 33332 22211111 112222 267899
Q ss_pred EEcCccccccCCCCCCchhHHHHHHHHHhhccC----------------CcEEEEEecCchhHHHHH-hhCccccccccc
Q 013316 274 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----------------GKVVVIFAGYSEPMKRVI-ASNEGFCRRVTK 336 (445)
Q Consensus 274 ~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----------------~~~~~i~a~~~~~~~~~~-~~~~~l~~R~~~ 336 (445)
+|||+.-.. ..++.-|-..+|. ..+.|.+|-++..-.--. ....++..|| .
T Consensus 1616 lLDEiNLaS-----------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-s 1683 (4600)
T COG5271 1616 LLDEINLAS-----------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-S 1683 (4600)
T ss_pred EeehhhhhH-----------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-h
Confidence 999994333 3566656555553 234555554433221000 0023466788 8
Q ss_pred ceeCCCCCHHHHHHHHHHHHh
Q 013316 337 FFHFNDFNSEELAKILHIKMN 357 (445)
Q Consensus 337 ~i~~~~~~~~~~~~il~~~l~ 357 (445)
++.+..++.+++..|+.+.-.
T Consensus 1684 vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1684 VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred eEEecccccchHHHHHHhhCC
Confidence 899999999999999876543
No 411
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.60 E-value=0.0015 Score=64.25 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=24.2
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
..|..++|.|++|+||||+|..+|..+.
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3466788999999999999999998864
No 412
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.0012 Score=63.55 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.4
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
....++|.||+|+||||++..|+..+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999998764
No 413
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.58 E-value=0.00014 Score=64.00 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=13.6
Q ss_pred cCcEEEEcCccccccCCCC
Q 013316 269 EGGILFVDEAYRLIPMQKA 287 (445)
Q Consensus 269 ~~~il~lDEid~l~~~~~~ 287 (445)
.+++|+|||++.+.+.+..
T Consensus 79 ~~~liviDEa~~~~~~r~~ 97 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSW 97 (193)
T ss_dssp TT-EEEETTGGGTSB---T
T ss_pred CCcEEEEECChhhcCCCcc
Confidence 6899999999999998764
No 414
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.56 E-value=0.00019 Score=66.60 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=50.2
Q ss_pred chHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcC
Q 013316 14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEW 70 (445)
Q Consensus 14 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~ 70 (445)
.--|++||+.|+.+.|++|+. .|.++|..|. ....||.+|+..||.++|++||+.
T Consensus 37 f~elceacR~GD~d~v~~LVe-tgvnVN~vD~-fD~spL~lAsLcGHe~vvklLLen 91 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVE-TGVNVNAVDR-FDSSPLYLASLCGHEDVVKLLLEN 91 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHH-hCCCcchhhc-ccccHHHHHHHcCcHHHHHHHHHc
Confidence 445899999999999999987 7999999997 578999999999999999999995
No 415
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.55 E-value=0.00043 Score=75.72 Aligned_cols=133 Identities=23% Similarity=0.342 Sum_probs=85.7
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc------ccccccCCchhHH---HHHHHHc--cCcEE
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD------LVGEFVGHTGPKT---RRRIKEA--EGGIL 273 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~------l~~~~~g~~~~~~---~~~~~~a--~~~il 273 (445)
..-++|+.||+.+|||++...+|.+.+. .|+.++.-. .++.|+-.....+ ..++-+| +|--|
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tgh-------kfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWI 959 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGH-------KFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWI 959 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCc-------cEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEE
Confidence 4558999999999999999999999887 888887654 2333433222111 1234333 45678
Q ss_pred EEcCccccccCCCCCCchhHHHHHHHHHhhccCCcE---------------EEEEecCchhHHHH--HhhCccccccccc
Q 013316 274 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---------------VVIFAGYSEPMKRV--IASNEGFCRRVTK 336 (445)
Q Consensus 274 ~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------------~~i~a~~~~~~~~~--~~~~~~l~~R~~~ 336 (445)
+|||.. |+| .+++..|-+++|+++- +.+.||.+.+-..- --...++|.|| .
T Consensus 960 VLDELN-LAp----------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-l 1027 (4600)
T COG5271 960 VLDELN-LAP----------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-L 1027 (4600)
T ss_pred Eeeccc-cCc----------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-H
Confidence 899983 333 3666677777765331 33444433221100 00135688899 8
Q ss_pred ceeCCCCCHHHHHHHHHHHH
Q 013316 337 FFHFNDFNSEELAKILHIKM 356 (445)
Q Consensus 337 ~i~~~~~~~~~~~~il~~~l 356 (445)
.++|.....+|+..|++..+
T Consensus 1028 E~hFddipedEle~ILh~rc 1047 (4600)
T COG5271 1028 EMHFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred hhhcccCcHHHHHHHHhccC
Confidence 89999999999999998654
No 416
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.55 E-value=0.00036 Score=62.31 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=27.3
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 247 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~ 247 (445)
..-++++||||+|||+++..++......+ ...+.++..
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g----~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQG----KKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCC----CeEEEEECC
Confidence 34578999999999999998887765432 245555543
No 417
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.55 E-value=0.00043 Score=60.81 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=19.9
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.-+.+.||+|||||++|-+.|..+-.
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~v~ 45 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALELVK 45 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 36888999999999999988876644
No 418
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.54 E-value=0.0015 Score=64.22 Aligned_cols=119 Identities=21% Similarity=0.215 Sum_probs=69.2
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccC
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPM 284 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~ 284 (445)
.++++||.+|||||+.+.+.+.+.. .++.++..+....... -......+.+. +...+|||||+.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~-------~~iy~~~~d~~~~~~~--l~d~~~~~~~~~~~~~~yifLDEIq~v~-- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLE-------EIIYINFDDLRLDRIE--LLDLLRAYIELKEREKSYIFLDEIQNVP-- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCc-------ceEEEEecchhcchhh--HHHHHHHHHHhhccCCceEEEecccCch--
Confidence 7889999999999999777766543 2455555554332211 11222222222 33699999997664
Q ss_pred CCCCCchhHHHHHHHHHhhccCCcE-EEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHH
Q 013316 285 QKADDKDYGIEALEEIMSVMDGGKV-VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK 350 (445)
Q Consensus 285 ~~~~~~~~~~~~~~~ll~~~~~~~~-~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~ 350 (445)
.-...+-...|.+.. ++|.+++..... -..-+.|..|. ..+.+.|+|-.|...
T Consensus 108 ----------~W~~~lk~l~d~~~~~v~itgsss~ll~--~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 108 ----------DWERALKYLYDRGNLDVLITGSSSSLLS--KEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred ----------hHHHHHHHHHccccceEEEECCchhhhc--cchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 233444555565543 333333222221 11245677785 888999999888754
No 419
>PRK07261 topology modulation protein; Provisional
Probab=97.54 E-value=0.00019 Score=61.87 Aligned_cols=101 Identities=18% Similarity=0.225 Sum_probs=57.6
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCC
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKA 287 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~ 287 (445)
.+++.|+||+||||+|+.|+..++. +++..+.-.....+. +.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~-------~~i~~D~~~~~~~~~----------------------~~--------- 43 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNC-------PVLHLDTLHFQPNWQ----------------------ER--------- 43 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC-------CeEecCCEEeccccc----------------------cC---------
Confidence 4789999999999999999887643 433322110000000 00
Q ss_pred CCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHh
Q 013316 288 DDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMN 357 (445)
Q Consensus 288 ~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 357 (445)
+ ..+....+...+..+. .||=.++.... .+....++|.+|.+..|...-+..+++..+.
T Consensus 44 ---~-~~~~~~~~~~~~~~~~-wIidg~~~~~~------~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~ 102 (171)
T PRK07261 44 ---D-DDDMIADISNFLLKHD-WIIDGNYSWCL------YEERMQEADQIIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred ---C-HHHHHHHHHHHHhCCC-EEEcCcchhhh------HHHHHHHCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 0 0122333333444454 44434333212 1233447788899998888888888888775
No 420
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.53 E-value=0.00022 Score=69.20 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=21.4
Q ss_pred eeEeecCCCCchhHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
.+++.|.||||||.+|-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47889999999999999999988
No 421
>PRK14532 adenylate kinase; Provisional
Probab=97.53 E-value=0.00049 Score=60.32 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=27.9
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE 252 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (445)
++++.||||+||||+|+.||+.++ +..++..++..+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g---------~~~is~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG---------MVQLSTGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---------CeEEeCcHHHHH
Confidence 589999999999999999998764 344566555443
No 422
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.52 E-value=0.00085 Score=58.82 Aligned_cols=75 Identities=21% Similarity=0.268 Sum_probs=47.2
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHc-CCCCCCCeEEeeccc-ccccccCCch----------------hHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMV-GILPTDRVTEVQRTD-LVGEFVGHTG----------------PKTRRRI 265 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~-~~~~~~~~~~~~~~~-l~~~~~g~~~----------------~~~~~~~ 265 (445)
....+.|+.|||||||||+.|-||..+..- ..+....+.-++.++ +.+...|... .-+-.++
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaI 214 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAI 214 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHH
Confidence 345689999999999999999999987542 122222444455443 3333444311 1122345
Q ss_pred HHccCcEEEEcCc
Q 013316 266 KEAEGGILFVDEA 278 (445)
Q Consensus 266 ~~a~~~il~lDEi 278 (445)
++..+-|+++|||
T Consensus 215 rsm~PEViIvDEI 227 (308)
T COG3854 215 RSMSPEVIIVDEI 227 (308)
T ss_pred HhcCCcEEEEecc
Confidence 5556789999999
No 423
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.51 E-value=8.6e-05 Score=64.14 Aligned_cols=28 Identities=29% Similarity=0.622 Sum_probs=25.2
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
++..++|+|+||||||++|+.+++.++.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~ 30 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4668999999999999999999999865
No 424
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.50 E-value=0.00065 Score=61.25 Aligned_cols=28 Identities=32% Similarity=0.603 Sum_probs=24.5
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+..++|.||||+||||+|+.|++.++.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~ 32 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENL 32 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3466999999999999999999998754
No 425
>PLN02200 adenylate kinase family protein
Probab=97.49 E-value=0.00033 Score=63.55 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=30.0
Q ss_pred CCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 013316 203 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 250 (445)
Q Consensus 203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~ 250 (445)
...+..+++.||||+||||+|+.|++.++. ..++.+++.
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~---------~his~gdll 78 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGF---------KHLSAGDLL 78 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCC---------eEEEccHHH
Confidence 445667889999999999999999987643 346665554
No 426
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.48 E-value=0.00035 Score=66.92 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=24.9
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
....-.+++||||||||++|+.|++....
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 34557899999999999999999998865
No 427
>PHA02624 large T antigen; Provisional
Probab=97.47 E-value=0.0016 Score=65.68 Aligned_cols=56 Identities=18% Similarity=0.079 Sum_probs=37.2
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccCCchhHHHHHHHHccCcEEEEcCcc
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAY 279 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~-~~g~~~~~~~~~~~~a~~~il~lDEid 279 (445)
..++|+||||||||+++.+|.+.++- ..+.++++.-.+. |.| =.+...+.+||++-
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G-------~vlsVNsPt~ks~FwL~----------pl~D~~~~l~dD~t 488 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGG-------KSLNVNCPPDKLNFELG----------CAIDQFMVVFEDVK 488 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC-------eEEEeeCCcchhHHHhh----------hhhhceEEEeeecc
Confidence 47999999999999999999999843 4444654432111 111 11244688889884
No 428
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.47 E-value=0.00084 Score=65.05 Aligned_cols=106 Identities=15% Similarity=0.189 Sum_probs=60.7
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc------ccC----------C-chhHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE------FVG----------H-TGPKTRRRIKE 267 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~------~~g----------~-~~~~~~~~~~~ 267 (445)
+..-++++||||+|||+++..++..+...+ .+++.++...-..+ -+| + .-..+.+.++.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g----~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRG----GKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcC----CeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 344688999999999999999988775432 24544443321110 111 1 11233444455
Q ss_pred ccCcEEEEcCccccccCCCCC-Cc--hhHHHHHHHHHhhccCCcEEEEEe
Q 013316 268 AEGGILFVDEAYRLIPMQKAD-DK--DYGIEALEEIMSVMDGGKVVVIFA 314 (445)
Q Consensus 268 a~~~il~lDEid~l~~~~~~~-~~--~~~~~~~~~ll~~~~~~~~~~i~a 314 (445)
.+..+|+||+|..+.....++ .+ ...++....|.+...+..+.+|+.
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilv 206 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIV 206 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 567899999999986533211 11 222344555666655555555554
No 429
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.47 E-value=0.024 Score=55.37 Aligned_cols=109 Identities=20% Similarity=0.333 Sum_probs=70.9
Q ss_pred CcEEEEcCccccccCCCCCCchh-HHHHHHHHHhhccC------CcEEEEEecCchhHH---HHHhhCccccccc-----
Q 013316 270 GGILFVDEAYRLIPMQKADDKDY-GIEALEEIMSVMDG------GKVVVIFAGYSEPMK---RVIASNEGFCRRV----- 334 (445)
Q Consensus 270 ~~il~lDEid~l~~~~~~~~~~~-~~~~~~~ll~~~~~------~~~~~i~a~~~~~~~---~~~~~~~~l~~R~----- 334 (445)
|-+|+|||++.+..-+. +. -....+.|++.+++ ..+.+++++|+.-+. +-+.+-|+|.+|+
T Consensus 240 GLlI~lDE~e~l~kl~~----~~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~ 315 (416)
T PF10923_consen 240 GLLILLDELENLYKLRN----DQAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFF 315 (416)
T ss_pred ceEEEEechHHHHhcCC----hHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhcccc
Confidence 46999999999976443 22 33556667766654 346777888777662 2222335555543
Q ss_pred ---------ccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHH
Q 013316 335 ---------TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 387 (445)
Q Consensus 335 ---------~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 387 (445)
..+|.+++++++++.+++.....-+... +.....++++.+..++....
T Consensus 316 ~~~~~~n~~~pvIrL~~l~~eel~~l~~klr~i~a~~-----~~~~~~v~d~~l~~~~~~~~ 372 (416)
T PF10923_consen 316 ADDGFDNLRAPVIRLQPLTPEELLELLEKLRDIYAEA-----YGYESRVDDEELKAFAQHVA 372 (416)
T ss_pred ccccccCccCceecCCCCCHHHHHHHHHHHHHHHHhh-----CCCCCCCCHHHHHHHHHHHH
Confidence 3467899999999999988755443322 23346778888887776665
No 430
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.46 E-value=0.00016 Score=63.06 Aligned_cols=62 Identities=27% Similarity=0.307 Sum_probs=36.1
Q ss_pred hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316 171 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 249 (445)
Q Consensus 171 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l 249 (445)
++|.++..+++...+. . .....+..++++||+|+|||++.+.+...+...+. .++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~------------~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~----~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-A------------AQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGG----YVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-G------------TSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT------EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-H------------HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC----EEEEEEEecc
Confidence 5777777777776443 1 12445678999999999999999999888877421 2555555443
No 431
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.46 E-value=0.00085 Score=66.87 Aligned_cols=106 Identities=16% Similarity=0.218 Sum_probs=60.8
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccc------cCC-----------chhHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF------VGH-----------TGPKTRRRIKE 267 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~------~g~-----------~~~~~~~~~~~ 267 (445)
+...++++||||+|||+++..++......+ ..++.++..+-..++ +|. .-..+.+.+++
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g----~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAG----GKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcC----CeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 344688999999999999999988765322 245555543311110 111 12233344444
Q ss_pred ccCcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccCCcEEEEEe
Q 013316 268 AEGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDGGKVVVIFA 314 (445)
Q Consensus 268 a~~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~i~a 314 (445)
....+|+||++..+....-.+ +.....+....|.....+..+.+++.
T Consensus 155 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv 204 (446)
T PRK11823 155 EKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLV 204 (446)
T ss_pred hCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 466899999999887532211 11122344555666666555555554
No 432
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.42 E-value=0.0011 Score=55.38 Aligned_cols=129 Identities=14% Similarity=0.220 Sum_probs=69.1
Q ss_pred ecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhH-HHHHHH---HccCcEEEEcCccccccCCCC
Q 013316 212 LGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPK-TRRRIK---EAEGGILFVDEAYRLIPMQKA 287 (445)
Q Consensus 212 ~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~-~~~~~~---~a~~~il~lDEid~l~~~~~~ 287 (445)
.+.+||||||+|.+|++.++..+-+.+. ++.++ .... +..+++ +....++|.|-=......|
T Consensus 5 IAtiGCGKTTva~aL~~LFg~wgHvQnD--------nI~~k----~~~~f~~~~l~~L~~~~~~vViaDRNNh~~reR-- 70 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGEWGHVQND--------NITGK----RKPKFIKAVLELLAKDTHPVVIADRNNHQKRER-- 70 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCCCCccccC--------CCCCC----CHHHHHHHHHHHHhhCCCCEEEEeCCCchHHHH--
Confidence 5789999999999999998743433332 33222 1112 222333 3456899998543332211
Q ss_pred CCchhHHHHHHHHHhhcc-----CCcEEEEEecCch--hHHHHHhh-Ccccccccc--cceeCCCCCHHHHHHHHHHHHh
Q 013316 288 DDKDYGIEALEEIMSVMD-----GGKVVVIFAGYSE--PMKRVIAS-NEGFCRRVT--KFFHFNDFNSEELAKILHIKMN 357 (445)
Q Consensus 288 ~~~~~~~~~~~~ll~~~~-----~~~~~~i~a~~~~--~~~~~~~~-~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~ 357 (445)
.++.+.+.+.-. ...+.+|+-.... +...+... ...+..|=| +.|....++......|+..|++
T Consensus 71 ------~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~ 144 (168)
T PF08303_consen 71 ------KQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIK 144 (168)
T ss_pred ------HHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHH
Confidence 122222222222 1244455533211 22222111 133444554 6678888888888889999888
Q ss_pred ccc
Q 013316 358 NQT 360 (445)
Q Consensus 358 ~~~ 360 (445)
+..
T Consensus 145 rfe 147 (168)
T PF08303_consen 145 RFE 147 (168)
T ss_pred hcC
Confidence 764
No 433
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.40 E-value=0.00083 Score=59.39 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=22.2
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
-++|.||+|+||||+++++...+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5889999999999999998888764
No 434
>PF13245 AAA_19: Part of AAA domain
Probab=97.40 E-value=0.00037 Score=50.93 Aligned_cols=26 Identities=42% Similarity=0.655 Sum_probs=19.5
Q ss_pred CCeeEeecCCCCchh-HHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKT-MVARILGRLLY 231 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt-~~A~~la~~~~ 231 (445)
...+++.|||||||| ++++.++....
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344667999999999 66677776664
No 435
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.38 E-value=0.00079 Score=71.17 Aligned_cols=95 Identities=23% Similarity=0.292 Sum_probs=55.3
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc----ccccccCCchhHHHHHHH-----------H--c
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD----LVGEFVGHTGPKTRRRIK-----------E--A 268 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~----l~~~~~g~~~~~~~~~~~-----------~--a 268 (445)
...+++.|+||||||++++++...+...+. ..++.-+.++. -+.+..|.....+.+.+. + .
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~~~~~~--~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~ 415 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELAEELGG--LLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPI 415 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCC--CceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccc
Confidence 347889999999999999999988876431 01333333332 111122322222222221 1 2
Q ss_pred cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-cEEEEE
Q 013316 269 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIF 313 (445)
Q Consensus 269 ~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~i~ 313 (445)
...+|++||+..+.. .....|++.+..+ ++++++
T Consensus 416 ~~~llIvDEaSMvd~-----------~~~~~Ll~~~~~~~rlilvG 450 (720)
T TIGR01448 416 DCDLLIVDESSMMDT-----------WLALSLLAALPDHARLLLVG 450 (720)
T ss_pred cCCEEEEeccccCCH-----------HHHHHHHHhCCCCCEEEEEC
Confidence 347999999966654 5667777777653 444443
No 436
>PRK06762 hypothetical protein; Provisional
Probab=97.38 E-value=0.00037 Score=59.77 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=22.9
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
|.-++|.|+||+||||+|+.+++.++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~ 27 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG 27 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999998873
No 437
>PRK00625 shikimate kinase; Provisional
Probab=97.37 E-value=0.00015 Score=62.40 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=23.4
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+|+|.|.||+|||++++.+|+.++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~ 26 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSL 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999999876
No 438
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.36 E-value=0.00059 Score=55.53 Aligned_cols=39 Identities=23% Similarity=0.187 Sum_probs=29.6
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 243 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~ 243 (445)
+...++|.|+.|+|||+++|.+++.++....+.+..|.-
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPTf~l 59 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSPTFTL 59 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCCcccCCCeee
Confidence 345788999999999999999999987644444444433
No 439
>PRK13947 shikimate kinase; Provisional
Probab=97.32 E-value=0.00019 Score=61.83 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=23.7
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
++++.|+||||||++|+.+|+.++.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999999876
No 440
>PLN02674 adenylate kinase
Probab=97.32 E-value=0.00058 Score=61.85 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=24.4
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
.++..++|.||||+||+|.|+.|++.++
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456799999999999999999999764
No 441
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.32 E-value=0.00033 Score=63.92 Aligned_cols=29 Identities=14% Similarity=0.222 Sum_probs=25.1
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.....++|+||+|+|||++++.+++.+..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 45568999999999999999999987754
No 442
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.31 E-value=0.00021 Score=75.00 Aligned_cols=89 Identities=25% Similarity=0.290 Sum_probs=76.7
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 013316 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (445)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh 90 (445)
..|.|+||.|+..|..-....|| ..++++|..+. .|++|+|.+...|+...+..+++ .|++.++.+..|.+|++
T Consensus 654 ~~~~s~lh~a~~~~~~~~~e~ll-~~ga~vn~~d~-~g~~plh~~~~~g~~~~~~~ll~----~~a~~~a~~~~~~~~l~ 727 (785)
T KOG0521|consen 654 CIGCSLLHVAVGTGDSGAVELLL-QNGADVNALDS-KGRTPLHHATASGHTSIACLLLK----RGADPNAFDPDGKLPLD 727 (785)
T ss_pred hcccchhhhhhccchHHHHHHHH-hcCCcchhhhc-cCCCcchhhhhhcccchhhhhcc----ccccccccCccCcchhh
Confidence 45799999999999987776555 67899999996 89999999999999999999999 48899999999999999
Q ss_pred HHHHcCCHHHHHHHH
Q 013316 91 MAAKNGCNEAAKLLL 105 (445)
Q Consensus 91 ~A~~~g~~~~~~~Ll 105 (445)
+|....+.+.+-++.
T Consensus 728 ~a~~~~~~d~~~l~~ 742 (785)
T KOG0521|consen 728 IAMEAANADIVLLLR 742 (785)
T ss_pred HHhhhccccHHHHHh
Confidence 998776666665554
No 443
>PRK03839 putative kinase; Provisional
Probab=97.30 E-value=0.00019 Score=62.51 Aligned_cols=25 Identities=40% Similarity=0.640 Sum_probs=23.0
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.|+|.|+||+||||+|+.+|+.++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999999865
No 444
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.28 E-value=0.0009 Score=56.06 Aligned_cols=41 Identities=34% Similarity=0.442 Sum_probs=32.4
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccc
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG 251 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~ 251 (445)
..++|+|.||+||||+|+++.+.+...+. +.+.++...+..
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~----~~~~LDgD~lR~ 43 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGI----KVYLLDGDNLRH 43 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-----EEEEEHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCC----cEEEecCcchhh
Confidence 46889999999999999999999987554 677777665543
No 445
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.27 E-value=0.0013 Score=53.84 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.6
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+++++||+|+|||+++-.++..+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 6899999999999998888877754
No 446
>PRK13808 adenylate kinase; Provisional
Probab=97.26 E-value=0.0021 Score=60.80 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.3
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.|+|+||||+|||++++.|++.++.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl 26 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGI 26 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999988743
No 447
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.26 E-value=0.004 Score=54.77 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=23.9
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMV 233 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~ 233 (445)
|..++|.||+|+||||.+-.+|..+...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 4568899999999999998898888754
No 448
>PLN02459 probable adenylate kinase
Probab=97.25 E-value=0.0015 Score=59.48 Aligned_cols=27 Identities=44% Similarity=0.620 Sum_probs=23.5
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
.+..++|.||||+||+|+|+.+++.++
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~ 54 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLG 54 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445789999999999999999999764
No 449
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.24 E-value=0.00023 Score=58.75 Aligned_cols=25 Identities=44% Similarity=0.595 Sum_probs=22.5
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
-+.+.|||||||||+|+.||..++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC
Confidence 3668999999999999999999876
No 450
>PRK13948 shikimate kinase; Provisional
Probab=97.23 E-value=0.00039 Score=60.31 Aligned_cols=44 Identities=25% Similarity=0.404 Sum_probs=33.8
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCC
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH 256 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 256 (445)
.++.+++|.|.+|+|||++++.+|+.++. +|+..+ .++.+.+|.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~-------~~iD~D--~~ie~~~g~ 51 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALML-------HFIDTD--RYIERVTGK 51 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCC-------CEEECC--HHHHHHHhC
Confidence 35678999999999999999999999876 776443 444444443
No 451
>PRK14974 cell division protein FtsY; Provisional
Probab=97.22 E-value=0.0042 Score=59.23 Aligned_cols=30 Identities=37% Similarity=0.515 Sum_probs=25.6
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 234 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~ 234 (445)
.|..++|.||||+||||++..+|..+...+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 466789999999999999999998886643
No 452
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.22 E-value=0.0015 Score=54.58 Aligned_cols=27 Identities=30% Similarity=0.564 Sum_probs=23.3
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
.+.-.++++||+|+||+++-|.+|...
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 345578999999999999999999865
No 453
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.21 E-value=0.00029 Score=59.52 Aligned_cols=25 Identities=36% Similarity=0.663 Sum_probs=22.8
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+++++|+||+|||++|+.+++.++.
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~ 25 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGL 25 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998865
No 454
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.20 E-value=0.0014 Score=56.06 Aligned_cols=99 Identities=15% Similarity=0.173 Sum_probs=55.6
Q ss_pred eEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc----------------c-cCCchhHHHHHHHHc-cC
Q 013316 209 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----------------F-VGHTGPKTRRRIKEA-EG 270 (445)
Q Consensus 209 vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~----------------~-~g~~~~~~~~~~~~a-~~ 270 (445)
++++|+||+|||++|..++...+. +.+.+..+.-.+. | ..+....+.+.+.+. .+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~-------~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGG-------PVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCC-------CeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCC
Confidence 588999999999999999876322 4444433321100 0 122445666777554 45
Q ss_pred cEEEEcCccccccCCCCCCc----hhHHHHHHHHHhhccCCcEEEEEe
Q 013316 271 GILFVDEAYRLIPMQKADDK----DYGIEALEEIMSVMDGGKVVVIFA 314 (445)
Q Consensus 271 ~il~lDEid~l~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~i~a 314 (445)
.+|+||-+..+...--..+. +...+.+..|+..+......+|+.
T Consensus 75 ~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viV 122 (169)
T cd00544 75 DVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILV 122 (169)
T ss_pred CEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEE
Confidence 68999988777653321111 111234455777665544333333
No 455
>PRK14529 adenylate kinase; Provisional
Probab=97.19 E-value=0.0015 Score=58.41 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=22.9
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.++|.||||+||||.|+.|++.++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~ 26 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDL 26 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5889999999999999999999865
No 456
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.19 E-value=0.00025 Score=60.00 Aligned_cols=26 Identities=27% Similarity=0.566 Sum_probs=24.5
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+++|.|++|+||||+.|.+|+.++.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~ 28 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNL 28 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCC
Confidence 57999999999999999999999987
No 457
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.19 E-value=0.0021 Score=55.37 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=23.2
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
-++|+|+||+|||++|+-+++++..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHH
Confidence 4789999999999999999999976
No 458
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.18 E-value=0.00021 Score=59.50 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=20.7
Q ss_pred eEeecCCCCchhHHHHHHHHHHH
Q 013316 209 MAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 209 vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
+++.||||+||||+|+.++..+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 68899999999999999997754
No 459
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.18 E-value=0.0003 Score=57.24 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=20.6
Q ss_pred eEeecCCCCchhHHHHHHHHHH
Q 013316 209 MAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 209 vll~Gp~GtGKt~~A~~la~~~ 230 (445)
|+|.|+|||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999986
No 460
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.18 E-value=0.0044 Score=54.98 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.1
Q ss_pred CCeeEeecCCCCchhHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
...++++||.|+|||++.+.|+..
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHHH
Confidence 356899999999999999999954
No 461
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.0058 Score=58.83 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=25.1
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHc
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMV 233 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~ 233 (445)
.+..++|.||+|+||||++..||..+...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 35689999999999999999999888643
No 462
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.17 E-value=0.0011 Score=56.91 Aligned_cols=94 Identities=11% Similarity=0.122 Sum_probs=51.8
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc-----cc-----------c-cCCchhHHHHHHHH--c
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV-----GE-----------F-VGHTGPKTRRRIKE--A 268 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~-----~~-----------~-~g~~~~~~~~~~~~--a 268 (445)
.+++.|+||+|||++|..++..++. +++.+...... .. | .-+....+.++++. .
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-------~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-------QVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-------CcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 5889999999999999999987643 22222221110 00 0 01123345566655 2
Q ss_pred cCcEEEEcCccccccCCCCCCc-hhHHHHHHHHHhhccCCc
Q 013316 269 EGGILFVDEAYRLIPMQKADDK-DYGIEALEEIMSVMDGGK 308 (445)
Q Consensus 269 ~~~il~lDEid~l~~~~~~~~~-~~~~~~~~~ll~~~~~~~ 308 (445)
.+.+++||-+..+..+.-..+. +...+.+..++..+....
T Consensus 76 ~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~ 116 (170)
T PRK05800 76 PGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLP 116 (170)
T ss_pred CCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCC
Confidence 4578999988777542211011 112234455666665533
No 463
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.17 E-value=0.0016 Score=59.80 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.7
Q ss_pred eEeecCCCCchhHHHHHHHHHHHHc
Q 013316 209 MAFLGNPGTGKTMVARILGRLLYMV 233 (445)
Q Consensus 209 vll~Gp~GtGKt~~A~~la~~~~~~ 233 (445)
|+|.|+||+||||+|+.+++.+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 6899999999999999999998753
No 464
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.17 E-value=0.0077 Score=55.71 Aligned_cols=27 Identities=22% Similarity=0.115 Sum_probs=22.7
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
....++|+||+|+||||+.+++...+.
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 345689999999999999998877664
No 465
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.17 E-value=0.0013 Score=69.79 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=44.6
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc----ccccCCchhHHHHHH---HH-----ccCcEEE
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVGHTGPKTRRRI---KE-----AEGGILF 274 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~----~~~~g~~~~~~~~~~---~~-----a~~~il~ 274 (445)
..++|.|+||||||++++++...+...+. .+..+.++... ....|.....+.+.+ .. ....+|+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~----~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llI 444 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGY----RVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLV 444 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCC----eEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEE
Confidence 46789999999999999999888765432 45555444322 222232222222221 11 2347999
Q ss_pred EcCcccccc
Q 013316 275 VDEAYRLIP 283 (445)
Q Consensus 275 lDEid~l~~ 283 (445)
+||+-.+..
T Consensus 445 vDEasMv~~ 453 (744)
T TIGR02768 445 IDEAGMVGS 453 (744)
T ss_pred EECcccCCH
Confidence 999966653
No 466
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.17 E-value=0.00035 Score=60.97 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=26.5
Q ss_pred eEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccc
Q 013316 209 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG 251 (445)
Q Consensus 209 vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~ 251 (445)
++++||||+||||+|+.|++.++ +..++.++++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~---------~~~is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG---------FTHLSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---------CeEEECChHHH
Confidence 68899999999999999998764 34555555543
No 467
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.17 E-value=0.0027 Score=57.42 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=27.6
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 247 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~ 247 (445)
..-++++||||||||++|..++......+ ..++.++..
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~----~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNG----KKVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC----CeEEEEECC
Confidence 34578999999999999999988765432 245555554
No 468
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.16 E-value=0.0026 Score=60.05 Aligned_cols=106 Identities=17% Similarity=0.264 Sum_probs=57.5
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccc----cccC-----------CchhH----HHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----EFVG-----------HTGPK----TRRRIK 266 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~----~~~g-----------~~~~~----~~~~~~ 266 (445)
..-++++||||||||++|-.++......+ ++++.++...... +-+| .+... +..+++
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g----~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAG----GTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC----CcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 33577999999999999988776665432 2555554432110 0011 01111 122233
Q ss_pred HccCcEEEEcCccccccCCC--CC---C-chhHH----HHHHHHHhhccCCcEEEEEec
Q 013316 267 EAEGGILFVDEAYRLIPMQK--AD---D-KDYGI----EALEEIMSVMDGGKVVVIFAG 315 (445)
Q Consensus 267 ~a~~~il~lDEid~l~~~~~--~~---~-~~~~~----~~~~~ll~~~~~~~~~~i~a~ 315 (445)
+....+|+||-+-.+.++.. +. . ..... +.+..|...+....+.+|+++
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tN 189 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFIN 189 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 33458999999998886421 10 0 01111 234445555566777777764
No 469
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.15 E-value=0.0029 Score=57.27 Aligned_cols=104 Identities=20% Similarity=0.242 Sum_probs=57.7
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHc-CCCCCCCeEEeeccc----cccc-------------------------c
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMV-GILPTDRVTEVQRTD----LVGE-------------------------F 253 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~-~~~~~~~~~~~~~~~----l~~~-------------------------~ 253 (445)
.....+|++||||||||+++..++...-.. +. +++.++... +... .
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge----~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGE----KVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT------EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC----cEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccc
Confidence 345578999999999999998766544222 22 444444322 0000 0
Q ss_pred cC---Cc----hhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEe
Q 013316 254 VG---HT----GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFA 314 (445)
Q Consensus 254 ~g---~~----~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a 314 (445)
.+ .. ...+.+.+++.+..+++||-+..+.... +.......+..|...+.+..++++++
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~---~~~~~r~~l~~l~~~l~~~~~t~llt 157 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYD---DPEELRRFLRALIKFLKSRGVTTLLT 157 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSS---SGGGHHHHHHHHHHHHHHTTEEEEEE
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcC---CHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 00 01 1233445555567899999998882211 13334456677777776655544444
No 470
>PRK05973 replicative DNA helicase; Provisional
Probab=97.15 E-value=0.011 Score=53.36 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=22.9
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+...+++.|+||+|||++|-.++.....
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~ 90 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMK 90 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 34456889999999999999888776543
No 471
>PRK13949 shikimate kinase; Provisional
Probab=97.14 E-value=0.00032 Score=60.29 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=23.8
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
..++|.|+||+|||++++.+|+.++.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~ 27 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 36899999999999999999999875
No 472
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.12 E-value=0.0035 Score=56.73 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=20.1
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
....++++||||||||++|..++..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578899999999999985555444
No 473
>PRK06696 uridine kinase; Validated
Probab=97.11 E-value=0.0014 Score=59.10 Aligned_cols=42 Identities=29% Similarity=0.311 Sum_probs=30.9
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 249 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l 249 (445)
..+.-|.+.|+||+||||+|+.|+..+...+. +++.++..++
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~----~v~~~~~Ddf 61 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGR----PVIRASIDDF 61 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCC----eEEEeccccc
Confidence 34667889999999999999999999976432 4444444443
No 474
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.10 E-value=0.00048 Score=49.38 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=20.5
Q ss_pred eEeecCCCCchhHHHHHHHHHH
Q 013316 209 MAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 209 vll~Gp~GtGKt~~A~~la~~~ 230 (445)
+.+.|+||+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999987
No 475
>PLN02840 tRNA dimethylallyltransferase
Probab=97.09 E-value=0.00089 Score=65.13 Aligned_cols=98 Identities=17% Similarity=0.224 Sum_probs=50.9
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccCCchhHHHHHHHHccCcEEEEcCccccccC
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM 284 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~-~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~ 284 (445)
...++|.||+|+|||++|..|++.++. +++.++.-.+... -+| +.+....-....+. -+||-+ .+.
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~~~~~-------~iis~Ds~qvYr~~~Ig-TaKpt~eE~~~V~H--hlidil---~p~ 87 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAKRLNG-------EIISADSVQVYRGLDVG-SAKPSLSERKEVPH--HLIDIL---HPS 87 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHCCC-------CeEeccccceecceeEE-cCCCCHHHHcCCCe--EeEeec---CCC
Confidence 345889999999999999999998764 4544433222111 112 22221111111122 223322 121
Q ss_pred CCCCCchhHHHHHHHHHhhccCCcEEEEEecC
Q 013316 285 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGY 316 (445)
Q Consensus 285 ~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~ 316 (445)
...+-+.+...+...+-...+.+++.||..+|
T Consensus 88 e~ySv~~F~~~A~~~I~~i~~rgkiPIvVGGT 119 (421)
T PLN02840 88 DDYSVGAFFDDARRATQDILNRGRVPIVAGGT 119 (421)
T ss_pred CceeHHHHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 11112345555655566666678776666554
No 476
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.09 E-value=0.0038 Score=56.79 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=22.3
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
.....++++|+||||||+++..++...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 345568899999999999999997654
No 477
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.08 E-value=0.0043 Score=54.93 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.4
Q ss_pred eeEeecCCCCchhHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGR 228 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~ 228 (445)
.++|+||.|+|||++.|.|+.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 599999999999999999983
No 478
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.08 E-value=0.024 Score=56.18 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=42.6
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHH-HcCCCCCCCeEEeeccccc----------cc------ccCCchhHHHHHHHHc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLY-MVGILPTDRVTEVQRTDLV----------GE------FVGHTGPKTRRRIKEA 268 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~-~~~~~~~~~~~~~~~~~l~----------~~------~~g~~~~~~~~~~~~a 268 (445)
...++|.||+|+||||++..||..+. ..+. ..+..+++.... .. ....+...+.+.+...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g---~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~ 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGK---KKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC---CeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh
Confidence 45788999999999999999988765 2111 133333333211 00 1123444555555544
Q ss_pred -cCcEEEEcCccc
Q 013316 269 -EGGILFVDEAYR 280 (445)
Q Consensus 269 -~~~il~lDEid~ 280 (445)
..-+||||..-.
T Consensus 298 ~~~DlVlIDt~G~ 310 (424)
T PRK05703 298 RDCDVILIDTAGR 310 (424)
T ss_pred CCCCEEEEeCCCC
Confidence 357899997743
No 479
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.08 E-value=0.0015 Score=58.29 Aligned_cols=29 Identities=28% Similarity=0.488 Sum_probs=24.1
Q ss_pred CCCCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 203 ARRPPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
....--+.+.||+||||||+-|.||....
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34455788999999999999999998653
No 480
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.07 E-value=0.0017 Score=62.65 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=24.8
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.....+++.||||+|||++++.|++.+..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 44567999999999999999999988754
No 481
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.07 E-value=0.0019 Score=54.22 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=22.0
Q ss_pred eEeecCCCCchhHHHHHHHHHHHH
Q 013316 209 MAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 209 vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
++|.|+||+|||++|+.++..+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999864
No 482
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.07 E-value=0.00043 Score=59.93 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.0
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
..++|.|+||+||||+|+.+++.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 36889999999999999999998754
No 483
>PRK06217 hypothetical protein; Validated
Probab=97.06 E-value=0.00046 Score=60.24 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=23.3
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
..|+|.|+||+||||+|+.|++.++.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35899999999999999999998764
No 484
>PRK06547 hypothetical protein; Provisional
Probab=97.05 E-value=0.00049 Score=59.17 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=24.8
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
..+..|++.|++|+|||++|+.+++.++.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~ 41 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGF 41 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45667888999999999999999998653
No 485
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.05 E-value=0.0079 Score=53.75 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.7
Q ss_pred CeeEeecCCCCchhHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
..++|+||.|+|||++.|.++..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHH
Confidence 67899999999999999999843
No 486
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.02 E-value=0.00089 Score=58.42 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=22.5
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
.+..++|.||||+|||++++.+.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45678999999999999999997754
No 487
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.02 E-value=0.0067 Score=53.76 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=21.4
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
...++|+||.|+|||++.+.++...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999998654
No 488
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.02 E-value=0.0018 Score=55.21 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=21.2
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
...++|+||+|+||+|+++.+-...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3468899999999999999987654
No 489
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.01 E-value=0.0051 Score=61.42 Aligned_cols=106 Identities=15% Similarity=0.152 Sum_probs=59.3
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc------ccC----------C-chhHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE------FVG----------H-TGPKTRRRIKE 267 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~------~~g----------~-~~~~~~~~~~~ 267 (445)
+..-++++|+||+|||+++..++......+ .+++.++..+-..+ -+| + .-..+...+++
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g----~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ----MKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC----CcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 444688999999999999999987765432 24444444321111 011 1 22333444555
Q ss_pred ccCcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccCCcEEEEEe
Q 013316 268 AEGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDGGKVVVIFA 314 (445)
Q Consensus 268 a~~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~i~a 314 (445)
.+..+|+||.|..+......+ .....++....|.+......+.+++.
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt 218 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIV 218 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 567899999998886432111 11122344445555555555555554
No 490
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.01 E-value=0.0029 Score=68.47 Aligned_cols=92 Identities=21% Similarity=0.218 Sum_probs=53.7
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc----ccCCchhHHHHHHHH--------ccCcEEE
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----FVGHTGPKTRRRIKE--------AEGGILF 274 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~----~~g~~~~~~~~~~~~--------a~~~il~ 274 (445)
..+++.|++|||||++.+.+.......+. .++-+.++....+ -.|-....+.+.+.. ....+|+
T Consensus 363 ~v~vv~G~AGTGKTT~l~~~~~~~e~~G~----~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlI 438 (988)
T PRK13889 363 DLGVVVGYAGTGKSAMLGVAREAWEAAGY----EVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLV 438 (988)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCC----eEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEE
Confidence 35779999999999999988777765432 4554444432222 123222333333211 1336999
Q ss_pred EcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEE
Q 013316 275 VDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIF 313 (445)
Q Consensus 275 lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~ 313 (445)
|||+-.+.. ..+..|+..... .++++|+
T Consensus 439 VDEASMv~~-----------~~m~~LL~~a~~~garvVLVG 468 (988)
T PRK13889 439 IDEAGMVGT-----------RQLERVLSHAADAGAKVVLVG 468 (988)
T ss_pred EECcccCCH-----------HHHHHHHHhhhhCCCEEEEEC
Confidence 999966654 555667766544 3344444
No 491
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.00 E-value=0.0096 Score=51.91 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=30.2
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 249 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l 249 (445)
++.-+++.|+||+|||++|+.++..+...+. ..+.++...+
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~----~~~~l~~d~~ 57 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLESKGY----RVYVLDGDNV 57 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC----cEEEECChHH
Confidence 4567889999999999999999998865332 3445554443
No 492
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.00 E-value=0.0019 Score=59.64 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.5
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
..+++|.||||+||||+.+.++..+.
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 36899999999999999999998774
No 493
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.00 E-value=0.0024 Score=57.30 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=22.5
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.|+++||||+||||+|+.||+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~ 26 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGI 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999988754
No 494
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.00047 Score=57.77 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=20.9
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.++++|.|||||||+++.++ .++.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~ 25 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGY 25 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCC
Confidence 57899999999999999999 5543
No 495
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.98 E-value=0.00049 Score=57.88 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.7
Q ss_pred eEeecCCCCchhHHHHHHHHHHH
Q 013316 209 MAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 209 vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
++|.|+||+||||+|+.+++.++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcC
Confidence 67899999999999999998754
No 496
>PRK14531 adenylate kinase; Provisional
Probab=96.98 E-value=0.0007 Score=59.07 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=23.3
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
..+++.||||+||||+++.|++.++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~ 28 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGL 28 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46999999999999999999998754
No 497
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.97 E-value=0.0022 Score=56.04 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=19.3
Q ss_pred CeeEeecCCCCchhH-HHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTM-VARILGRLLY 231 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~-~A~~la~~~~ 231 (445)
.++++.||+|||||+ ++..+...+.
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~ 50 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALK 50 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhc
Confidence 689999999999999 5555555443
No 498
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.97 E-value=0.0032 Score=63.76 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=24.1
Q ss_pred CCCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 203 ARRPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
.++...+++.||+|||||++-|+||..-
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3455689999999999999999999854
No 499
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.96 E-value=0.16 Score=49.23 Aligned_cols=215 Identities=19% Similarity=0.198 Sum_probs=105.9
Q ss_pred CCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc---------------ccccCC----chhHH-H
Q 013316 203 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV---------------GEFVGH----TGPKT-R 262 (445)
Q Consensus 203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~---------------~~~~g~----~~~~~-~ 262 (445)
..+|..|++.|-.|+||||.|-.+|..+...+. .+.-+.|.... -.+|+. ++..+ +
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~----kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak 172 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGK----KVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAK 172 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCC----ceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHH
Confidence 567788999999999999999999999977332 23323332210 113333 23323 3
Q ss_pred HHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHH---HHhhccCCcEEEEE-ecCchhHHHHHhhCcccccccc
Q 013316 263 RRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEE---IMSVMDGGKVVVIF-AGYSEPMKRVIASNEGFCRRVT 335 (445)
Q Consensus 263 ~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~---ll~~~~~~~~~~i~-a~~~~~~~~~~~~~~~l~~R~~ 335 (445)
..++.+ ..-++++|=+-+++- ..+..++ +-..+....+++|. +.+-.+.... ..+|-.+++
T Consensus 173 ~al~~ak~~~~DvvIvDTAGRl~i---------de~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~---A~aF~e~l~ 240 (451)
T COG0541 173 AALEKAKEEGYDVVIVDTAGRLHI---------DEELMDELKEIKEVINPDETLLVVDAMIGQDAVNT---AKAFNEALG 240 (451)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccc---------cHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHH---HHHHhhhcC
Confidence 344444 347999998766653 1133333 33444555665555 3332221111 223333333
Q ss_pred -cceeCCCCCHHHHHHHHHHHHh--cccccccccc--cccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316 336 -KFFHFNDFNSEELAKILHIKMN--NQTEDSLLYG--FKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 410 (445)
Q Consensus 336 -~~i~~~~~~~~~~~~il~~~l~--~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~ 410 (445)
.-+-+...|.+.+-=-.-.... ...-.+-..+ +.=-+.|.|+-++..+ .| -.++..++|++.+.
T Consensus 241 itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRI----------LG-MGDv~sLvEk~~~~ 309 (451)
T COG0541 241 ITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRI----------LG-MGDVLSLIEKAEEV 309 (451)
T ss_pred CceEEEEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHh----------cC-cccHHHHHHHHHHh
Confidence 2234444443333222111111 1111111111 1111234444433222 22 55778888888665
Q ss_pred hhhhhccCCCChhhhhhccHHHHHHHHHHHHhcC
Q 013316 411 LDLRLSFDCLDTDELRTITLEDLEAGLKLLLRLG 444 (445)
Q Consensus 411 ~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~~~ 444 (445)
.+.--.....++-..-..|.+||.+.++.++.+|
T Consensus 310 ~d~e~a~~~~~kl~~g~FtL~Df~~Ql~~m~kmG 343 (451)
T COG0541 310 VDEEEAEKLAEKLKKGKFTLEDFLEQLEQMKKMG 343 (451)
T ss_pred hhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccC
Confidence 4331111111111123589999999999998887
No 500
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.96 E-value=0.0016 Score=57.21 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=22.3
Q ss_pred CCCCCeeEeecCCCCchhHHHHHHHHH
Q 013316 203 ARRPPHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 203 ~~~~~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
......++|.|+.|+|||++.+.|+..
T Consensus 49 ~k~d~~lvl~G~QG~GKStf~~~L~~~ 75 (198)
T PF05272_consen 49 CKNDTVLVLVGKQGIGKSTFFRKLGPE 75 (198)
T ss_pred CcCceeeeEecCCcccHHHHHHHHhHH
Confidence 445557889999999999999999655
Done!