Query 013316
Match_columns 445
No_of_seqs 431 out of 3428
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 08:17:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013316.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013316hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 6.7E-37 2.3E-41 292.5 13.9 236 165-442 144-391 (405)
2 4b4t_I 26S protease regulatory 100.0 6.1E-36 2.1E-40 286.2 12.2 237 164-442 177-425 (437)
3 4b4t_H 26S protease regulatory 100.0 4.4E-35 1.5E-39 283.1 12.9 235 165-441 205-451 (467)
4 4b4t_L 26S protease subunit RP 100.0 4.8E-35 1.6E-39 284.4 13.2 237 165-443 177-425 (437)
5 4b4t_M 26S protease regulatory 100.0 2.1E-35 7.1E-40 286.7 9.2 236 165-442 177-424 (434)
6 4b4t_K 26S protease regulatory 100.0 5.9E-34 2E-38 276.5 12.2 234 165-440 168-414 (428)
7 3syl_A Protein CBBX; photosynt 100.0 7.4E-30 2.5E-34 242.1 22.3 260 162-435 23-289 (309)
8 3cf2_A TER ATPase, transitiona 100.0 2.2E-31 7.5E-36 276.1 10.4 246 165-443 200-462 (806)
9 3cf2_A TER ATPase, transitiona 100.0 2.4E-32 8.2E-37 283.3 1.8 243 167-442 475-745 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.7E-28 9.1E-33 231.8 19.1 210 167-409 10-228 (322)
11 3eie_A Vacuolar protein sortin 100.0 1E-28 3.4E-33 235.3 15.9 209 167-408 16-232 (322)
12 2qp9_X Vacuolar protein sortin 100.0 3.5E-28 1.2E-32 234.2 18.7 245 166-443 48-334 (355)
13 3cf0_A Transitional endoplasmi 100.0 9.1E-29 3.1E-33 233.2 9.4 243 167-442 13-283 (301)
14 3hu3_A Transitional endoplasmi 99.9 1E-27 3.6E-32 238.7 12.8 244 167-443 202-462 (489)
15 2zan_A Vacuolar protein sortin 99.9 9.4E-27 3.2E-31 230.6 16.7 211 166-409 131-350 (444)
16 2ce7_A Cell division protein F 99.9 2.2E-26 7.6E-31 227.1 18.5 231 167-441 14-257 (476)
17 4gpm_A Engineered protein OR26 99.9 1E-26 3.5E-31 200.0 13.8 139 1-146 24-163 (169)
18 1lv7_A FTSH; alpha/beta domain 99.9 9.2E-26 3.1E-30 208.1 20.8 231 167-441 10-253 (257)
19 2x8a_A Nuclear valosin-contain 99.9 5.3E-27 1.8E-31 217.4 10.3 250 165-442 6-266 (274)
20 3h4m_A Proteasome-activating n 99.9 3.5E-26 1.2E-30 214.2 15.4 234 167-442 15-260 (285)
21 3d8b_A Fidgetin-like protein 1 99.9 1.3E-25 4.5E-30 216.6 18.5 243 167-442 82-336 (357)
22 2qz4_A Paraplegin; AAA+, SPG7, 99.9 2E-26 7E-31 213.0 12.3 235 167-442 4-251 (262)
23 3vfd_A Spastin; ATPase, microt 99.9 1E-25 3.6E-30 220.1 16.6 243 167-442 113-367 (389)
24 3b9p_A CG5977-PA, isoform A; A 99.9 1.4E-25 4.8E-30 211.4 14.5 243 167-442 19-274 (297)
25 3hws_A ATP-dependent CLP prote 99.9 1.4E-24 4.8E-29 210.3 17.0 255 164-436 9-345 (363)
26 2dhr_A FTSH; AAA+ protein, hex 99.9 6.8E-25 2.3E-29 217.8 15.0 232 166-441 28-272 (499)
27 1ofh_A ATP-dependent HSL prote 99.9 1E-23 3.6E-28 199.7 18.2 260 164-439 9-298 (310)
28 1g41_A Heat shock protein HSLU 99.9 4.9E-23 1.7E-27 200.3 22.6 255 164-438 9-431 (444)
29 4gpm_A Engineered protein OR26 99.9 4.3E-24 1.5E-28 183.6 12.8 138 15-159 6-143 (169)
30 1d9s_A Cyclin-dependent kinase 99.9 4.1E-24 1.4E-28 177.0 9.9 133 4-144 2-136 (136)
31 2r62_A Cell division protease 99.9 2.8E-26 9.7E-31 212.8 -3.7 231 167-440 9-253 (268)
32 3lvq_E ARF-GAP with SH3 domain 99.9 2.1E-23 7.3E-28 210.5 15.2 129 13-148 132-269 (497)
33 4b93_B Ankyrin repeat domain-c 99.9 6.2E-24 2.1E-28 197.0 10.2 152 1-159 73-225 (269)
34 4fcw_A Chaperone protein CLPB; 99.9 7.7E-23 2.6E-27 193.9 17.3 220 164-411 11-278 (311)
35 3c5r_A BARD-1, BRCA1-associate 99.9 1.5E-23 5.1E-28 173.8 10.5 131 4-141 1-131 (137)
36 1ny5_A Transcriptional regulat 99.9 1.7E-24 5.7E-29 210.7 5.4 282 87-437 73-384 (387)
37 3v30_A DNA-binding protein rfx 99.9 5.8E-23 2E-27 177.1 13.5 132 12-150 35-166 (172)
38 3pfi_A Holliday junction ATP-d 99.9 3.1E-22 1.1E-26 192.0 19.8 206 167-439 27-253 (338)
39 1ixz_A ATP-dependent metallopr 99.9 1.7E-22 5.8E-27 185.8 17.1 227 167-437 14-253 (254)
40 3dzd_A Transcriptional regulat 99.9 3.2E-25 1.1E-29 214.0 -1.2 313 28-409 15-359 (368)
41 1ojl_A Transcriptional regulat 99.9 1.6E-23 5.4E-28 197.2 10.3 202 170-410 3-234 (304)
42 1um8_A ATP-dependent CLP prote 99.9 2.1E-22 7.2E-27 195.9 18.3 255 163-436 14-361 (376)
43 1awc_B Protein (GA binding pro 99.9 6.9E-23 2.4E-27 173.1 12.7 134 14-155 3-136 (153)
44 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.1E-22 3.8E-27 174.9 13.8 143 10-159 11-153 (169)
45 2jab_A H10-2-G3; HER2, darpin, 99.9 7.3E-23 2.5E-27 169.4 12.1 125 11-142 12-136 (136)
46 1ihb_A P18-INK4C(INK6), cyclin 99.9 7.7E-23 2.6E-27 174.4 12.1 124 13-144 5-128 (162)
47 3f6q_A Integrin-linked protein 99.9 9.7E-23 3.3E-27 177.0 12.9 143 11-159 3-145 (179)
48 3twr_A Tankyrase-2; ankyrin re 99.9 3.6E-22 1.2E-26 170.8 16.0 138 12-155 7-144 (165)
49 3pvs_A Replication-associated 99.9 8.3E-23 2.8E-27 201.5 13.4 209 167-438 24-242 (447)
50 1bi7_B P16INK4A, MTS1, multipl 99.9 3.3E-23 1.1E-27 175.8 8.7 138 10-155 9-147 (156)
51 3v31_A Ankyrin repeat family A 99.9 1.6E-22 5.4E-27 173.5 12.2 140 12-158 2-141 (167)
52 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.3E-22 4.5E-27 184.8 12.3 142 1-149 25-169 (239)
53 3twr_A Tankyrase-2; ankyrin re 99.9 1.2E-22 4.1E-27 173.9 10.9 131 5-143 33-164 (165)
54 3v31_A Ankyrin repeat family A 99.9 2.1E-22 7E-27 172.7 11.9 136 3-145 25-161 (167)
55 1n0r_A 4ANK, 4 ankyrin repeats 99.9 4.1E-22 1.4E-26 162.0 13.1 126 12-144 1-126 (126)
56 2vge_A RELA-associated inhibit 99.9 2.7E-22 9.2E-27 181.4 13.2 144 1-151 5-155 (229)
57 3f6q_A Integrin-linked protein 99.9 2.7E-22 9.2E-27 174.2 12.6 137 4-147 29-166 (179)
58 1yyh_A HN1;, notch 1, ankyrin 99.9 8.9E-23 3.1E-27 187.5 10.0 138 12-152 56-223 (253)
59 2bjv_A PSP operon transcriptio 99.9 3E-22 1E-26 185.3 13.4 206 167-410 4-239 (265)
60 2rfm_A Putative ankyrin repeat 99.9 2.7E-22 9.2E-27 176.2 12.4 142 11-159 33-174 (192)
61 1iy2_A ATP-dependent metallopr 99.9 1.2E-21 3.9E-26 182.6 17.1 227 167-437 38-277 (278)
62 3v30_A DNA-binding protein rfx 99.9 1.9E-22 6.4E-27 173.9 10.9 141 13-159 2-142 (172)
63 1ypw_A Transitional endoplasmi 99.9 3.7E-25 1.3E-29 233.7 -7.8 178 167-359 475-664 (806)
64 2f8y_A Notch homolog 1, transl 99.9 3.2E-22 1.1E-26 179.8 11.8 149 2-156 12-162 (223)
65 1ikn_D Protein (I-kappa-B-alph 99.9 9.8E-22 3.4E-26 178.4 15.0 139 2-146 66-211 (236)
66 2rfm_A Putative ankyrin repeat 99.9 1.9E-22 6.5E-27 177.2 9.6 133 3-142 57-190 (192)
67 2y1l_E Darpin-8.4; hydrolase-i 99.9 5E-22 1.7E-26 170.8 12.0 134 2-142 35-169 (169)
68 3aaa_C Myotrophin, protein V-1 99.9 6.1E-22 2.1E-26 160.8 11.2 110 11-127 5-114 (123)
69 3pxi_A Negative regulator of g 99.9 6.1E-22 2.1E-26 209.4 14.3 214 170-412 492-725 (758)
70 3hra_A Ankyrin repeat family p 99.9 6.1E-22 2.1E-26 175.0 11.9 152 4-161 29-187 (201)
71 3aji_A 26S proteasome non-ATPa 99.9 8.7E-22 3E-26 178.0 13.0 148 3-157 62-210 (231)
72 1oy3_D Transcription factor in 99.9 3E-22 1E-26 186.5 10.2 135 12-149 44-222 (282)
73 3m6a_A ATP-dependent protease 99.9 6.1E-22 2.1E-26 200.6 13.2 230 169-438 81-339 (543)
74 2rfa_A Transient receptor pote 99.9 1.4E-21 4.7E-26 176.9 13.6 135 4-145 27-184 (232)
75 3b7b_A Euchromatic histone-lys 99.9 9.9E-22 3.4E-26 178.3 12.4 150 2-157 65-215 (237)
76 1bd8_A P19INK4D CDK4/6 inhibit 99.9 7E-22 2.4E-26 167.3 10.2 137 13-157 2-138 (156)
77 1r6b_X CLPA protein; AAA+, N-t 99.9 2.1E-21 7.4E-26 205.6 16.4 213 165-410 453-714 (758)
78 3t15_A Ribulose bisphosphate c 99.9 1.1E-21 3.9E-26 183.7 12.5 162 202-390 32-219 (293)
79 3hra_A Ankyrin repeat family p 99.9 1.7E-21 5.7E-26 172.2 12.6 141 11-157 3-145 (201)
80 4b93_B Ankyrin repeat domain-c 99.9 8.1E-22 2.8E-26 182.7 11.0 128 2-138 107-235 (269)
81 1hqc_A RUVB; extended AAA-ATPa 99.9 1E-20 3.5E-25 180.3 18.7 183 167-407 10-214 (324)
82 1awc_B Protein (GA binding pro 99.9 1.5E-21 5E-26 164.9 11.3 130 2-138 23-152 (153)
83 2etb_A Transient receptor pote 99.9 9.3E-22 3.2E-26 180.9 10.1 136 11-149 88-251 (256)
84 2rfa_A Transient receptor pote 99.9 1.6E-21 5.6E-26 176.4 11.3 142 12-159 2-161 (232)
85 1s70_B 130 kDa myosin-binding 99.9 1.1E-21 3.9E-26 184.4 10.4 151 2-159 61-272 (299)
86 1qvr_A CLPB protein; coiled co 99.9 1.5E-20 5E-25 201.0 20.2 215 169-411 558-819 (854)
87 2dzn_A Probable 26S proteasome 99.9 1.9E-21 6.5E-26 175.3 11.4 139 12-156 71-212 (228)
88 1bd8_A P19INK4D CDK4/6 inhibit 99.9 4.1E-21 1.4E-25 162.6 12.7 128 5-141 27-155 (156)
89 3uk6_A RUVB-like 2; hexameric 99.9 1.6E-20 5.5E-25 182.2 18.4 215 168-439 43-329 (368)
90 1k1a_A B-cell lymphoma 3-encod 99.9 2.1E-21 7E-26 176.5 11.3 147 3-152 35-183 (241)
91 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.7E-21 5.9E-26 165.9 10.2 136 1-144 25-162 (162)
92 2f8y_A Notch homolog 1, transl 99.9 4.6E-21 1.6E-25 172.2 13.4 150 2-157 46-196 (223)
93 2etb_A Transient receptor pote 99.9 1E-21 3.5E-26 180.6 9.2 150 3-159 28-228 (256)
94 1yyh_A HN1;, notch 1, ankyrin 99.8 1.9E-21 6.4E-26 178.6 10.8 134 18-158 28-163 (253)
95 3ehr_A Osteoclast-stimulating 99.8 2.1E-21 7E-26 174.7 10.2 133 12-150 72-204 (222)
96 1oy3_D Transcription factor in 99.8 2E-21 6.8E-26 180.9 10.3 132 11-149 7-188 (282)
97 2xai_A ASB-9, ankyrin repeat a 99.8 2.6E-21 9E-26 178.5 10.9 137 2-146 24-161 (261)
98 3jxi_A Vanilloid receptor-rela 99.8 3.5E-21 1.2E-25 177.4 11.2 134 12-148 92-254 (260)
99 1ikn_D Protein (I-kappa-B-alph 99.8 2.1E-21 7.1E-26 176.3 9.1 151 6-159 37-191 (236)
100 2c9o_A RUVB-like 1; hexameric 99.8 1E-20 3.5E-25 188.2 14.8 102 168-286 36-143 (456)
101 2xai_A ASB-9, ankyrin repeat a 99.8 7.9E-21 2.7E-25 175.3 12.9 138 12-157 2-139 (261)
102 1ypw_A Transitional endoplasmi 99.8 5.3E-21 1.8E-25 202.1 13.1 179 166-359 201-388 (806)
103 3aji_A 26S proteasome non-ATPa 99.8 5.8E-21 2E-25 172.6 11.6 136 2-144 94-230 (231)
104 3t8k_A Uncharacterized protein 99.8 2.1E-21 7.3E-26 169.4 7.8 135 14-156 7-158 (186)
105 3deo_A Signal recognition part 99.8 2E-21 6.8E-26 169.4 7.5 110 11-128 42-152 (183)
106 2pnn_A Transient receptor pote 99.8 6.4E-21 2.2E-25 177.0 11.1 136 11-149 99-264 (273)
107 3utm_A Tankyrase-1; tankyrase, 99.8 9.7E-21 3.3E-25 181.8 12.5 150 2-154 79-315 (351)
108 1k1a_A B-cell lymphoma 3-encod 99.8 2E-20 6.7E-25 170.0 13.6 134 10-149 6-146 (241)
109 3b7b_A Euchromatic histone-lys 99.8 1.4E-20 4.7E-25 170.8 12.4 139 4-148 34-173 (237)
110 1sw6_A Regulatory protein SWI6 99.8 2.4E-21 8.2E-26 184.9 7.6 151 2-158 118-322 (327)
111 4hbd_A KN motif and ankyrin re 99.8 8.1E-21 2.8E-25 176.8 10.4 147 7-159 104-257 (276)
112 3ljn_A Hypothetical protein; a 99.8 9.8E-21 3.4E-25 183.3 10.9 151 2-159 41-251 (364)
113 3kea_A K1L; tropism, ANK repea 99.8 5.6E-21 1.9E-25 178.7 8.5 130 7-145 24-155 (285)
114 3d9h_A CDNA FLJ77766, highly s 99.8 1.8E-20 6.1E-25 175.3 11.6 135 3-145 81-216 (285)
115 3jxi_A Vanilloid receptor-rela 99.8 5.8E-21 2E-25 175.9 8.2 142 11-158 44-231 (260)
116 3d9h_A CDNA FLJ77766, highly s 99.8 4.1E-20 1.4E-24 172.8 14.0 149 2-159 113-262 (285)
117 3ui2_A Signal recognition part 99.8 8.3E-21 2.8E-25 173.4 9.0 109 11-127 43-152 (244)
118 1wdy_A 2-5A-dependent ribonucl 99.8 3E-20 1E-24 172.8 12.4 132 11-148 146-282 (285)
119 1n11_A Ankyrin; clathrin, BAND 99.8 1.3E-20 4.5E-25 187.0 10.6 148 3-157 234-382 (437)
120 3t8k_A Uncharacterized protein 99.8 1.1E-20 3.9E-25 164.8 8.0 126 12-144 37-179 (186)
121 3kea_A K1L; tropism, ANK repea 99.8 3.1E-20 1.1E-24 173.6 11.5 145 2-155 52-197 (285)
122 2pnn_A Transient receptor pote 99.8 3.9E-20 1.3E-24 171.8 12.0 143 10-158 51-239 (273)
123 2dzn_A Probable 26S proteasome 99.8 5.5E-20 1.9E-24 165.7 12.6 145 10-158 33-180 (228)
124 4hbd_A KN motif and ankyrin re 99.8 1.9E-20 6.4E-25 174.3 9.8 134 2-142 132-273 (276)
125 3ljn_A Hypothetical protein; a 99.8 4E-20 1.4E-24 179.1 12.0 130 12-148 137-273 (364)
126 3utm_A Tankyrase-1; tankyrase, 99.8 5.3E-20 1.8E-24 176.6 12.3 138 12-155 23-160 (351)
127 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.3E-19 4.5E-24 139.2 11.5 93 12-110 1-93 (93)
128 1ycs_B 53BP2, P53BP2; ankyrin 99.8 1.2E-20 4.2E-25 171.7 6.4 134 11-152 3-136 (239)
129 1s70_B 130 kDa myosin-binding 99.8 6.1E-20 2.1E-24 172.5 11.3 124 9-139 36-159 (299)
130 3pxg_A Negative regulator of g 99.8 2.6E-19 9E-24 178.4 16.2 158 167-359 178-341 (468)
131 4g8k_A 2-5A-dependent ribonucl 99.8 8.4E-20 2.9E-24 174.8 12.1 134 12-151 167-305 (337)
132 2fo1_E LIN-12 protein; beta-ba 99.8 1.2E-19 4.2E-24 176.3 12.1 154 2-159 154-320 (373)
133 3te6_A Regulatory protein SIR3 99.8 5.2E-19 1.8E-23 165.3 15.1 239 171-439 22-314 (318)
134 1n11_A Ankyrin; clathrin, BAND 99.8 2.1E-19 7.2E-24 178.3 12.9 150 2-158 200-350 (437)
135 1r6b_X CLPA protein; AAA+, N-t 99.8 2.2E-18 7.4E-23 182.6 21.2 243 167-441 184-434 (758)
136 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.5E-19 5.3E-24 138.8 8.7 92 47-143 1-92 (93)
137 1wdy_A 2-5A-dependent ribonucl 99.8 3.6E-19 1.2E-23 165.5 12.5 147 2-155 60-222 (285)
138 1dcq_A PYK2-associated protein 99.8 4.3E-19 1.5E-23 165.1 12.9 124 14-144 131-263 (278)
139 2l6b_A NR1C; ankyrin, consensu 99.8 1.8E-19 6.2E-24 144.2 8.7 107 10-122 6-112 (115)
140 2b0o_E UPLC1; arfgap, structur 99.8 4E-19 1.4E-23 167.2 12.2 125 13-144 151-284 (301)
141 2fo1_E LIN-12 protein; beta-ba 99.8 6.2E-20 2.1E-24 178.4 6.8 151 2-158 187-352 (373)
142 1d2n_A N-ethylmaleimide-sensit 99.8 2.5E-18 8.4E-23 159.6 17.3 198 170-407 34-245 (272)
143 2chg_A Replication factor C sm 99.8 7.6E-18 2.6E-22 151.0 19.9 202 168-438 16-224 (226)
144 3eu9_A Huntingtin-interacting 99.8 5.1E-19 1.7E-23 160.3 12.2 141 3-148 31-172 (240)
145 1g8p_A Magnesium-chelatase 38 99.8 9.1E-19 3.1E-23 168.6 13.9 232 167-441 22-323 (350)
146 3jue_A Arfgap with coiled-coil 99.8 6.4E-19 2.2E-23 169.8 12.5 125 13-144 199-326 (368)
147 3u61_B DNA polymerase accessor 99.8 1E-18 3.4E-23 166.5 13.8 185 167-408 24-220 (324)
148 1bi7_B P16INK4A, MTS1, multipl 99.8 1.2E-19 4.2E-24 153.6 6.5 114 2-122 33-148 (156)
149 4g8k_A 2-5A-dependent ribonucl 99.8 6.5E-19 2.2E-23 168.6 11.9 136 3-148 191-330 (337)
150 3eu9_A Huntingtin-interacting 99.8 6.5E-19 2.2E-23 159.5 11.0 151 2-159 63-217 (240)
151 1sw6_A Regulatory protein SWI6 99.8 1.5E-19 5.3E-24 172.4 6.9 127 1-129 151-326 (327)
152 2v1u_A Cell division control p 99.8 1.1E-18 3.8E-23 170.2 10.1 230 169-440 19-276 (387)
153 2qby_B CDC6 homolog 3, cell di 99.8 1.9E-17 6.6E-22 161.4 18.4 226 169-441 20-271 (384)
154 1qvr_A CLPB protein; coiled co 99.8 6.2E-18 2.1E-22 180.8 16.0 214 167-409 168-390 (854)
155 3pxi_A Negative regulator of g 99.8 6.2E-18 2.1E-22 178.8 15.6 201 167-410 178-384 (758)
156 3n70_A Transport activator; si 99.8 2.5E-18 8.7E-23 143.6 9.5 138 170-343 2-144 (145)
157 3c5r_A BARD-1, BRCA1-associate 99.7 2.1E-18 7.1E-23 142.5 8.7 115 38-159 2-116 (137)
158 1sxj_A Activator 1 95 kDa subu 99.7 3.5E-18 1.2E-22 172.6 11.4 199 167-407 37-255 (516)
159 2vge_A RELA-associated inhibit 99.7 5E-19 1.7E-23 159.9 4.3 133 2-144 42-178 (229)
160 1jbk_A CLPB protein; beta barr 99.7 1.2E-18 4.2E-23 152.4 6.4 166 167-352 20-194 (195)
161 1njg_A DNA polymerase III subu 99.7 1.7E-16 5.9E-21 144.1 20.3 201 168-437 22-248 (250)
162 3bos_A Putative DNA replicatio 99.7 3.9E-17 1.3E-21 148.3 15.0 183 205-438 51-241 (242)
163 2jab_A H10-2-G3; HER2, darpin, 99.7 1.5E-17 5.1E-22 137.2 10.9 101 2-108 35-136 (136)
164 2b0o_E UPLC1; arfgap, structur 99.7 4.6E-18 1.6E-22 159.9 8.8 117 2-131 172-298 (301)
165 1d9s_A Cyclin-dependent kinase 99.7 1.8E-18 6.2E-23 142.8 5.2 116 37-159 2-118 (136)
166 1in4_A RUVB, holliday junction 99.7 3.4E-16 1.2E-20 149.3 21.2 207 167-440 23-250 (334)
167 2r44_A Uncharacterized protein 99.7 1.6E-17 5.4E-22 158.6 11.4 226 167-441 25-298 (331)
168 2l6b_A NR1C; ankyrin, consensu 99.7 8.6E-18 3E-22 134.3 7.8 104 43-152 5-108 (115)
169 3aaa_C Myotrophin, protein V-1 99.7 7.4E-18 2.5E-22 136.5 7.0 108 47-159 6-113 (123)
170 1l8q_A Chromosomal replication 99.7 9.4E-17 3.2E-21 152.8 15.4 200 205-440 36-240 (324)
171 2chq_A Replication factor C sm 99.7 9.6E-17 3.3E-21 152.2 14.8 187 167-408 15-208 (319)
172 1n0r_A 4ANK, 4 ankyrin repeats 99.7 4.6E-17 1.6E-21 131.9 10.7 103 2-110 23-126 (126)
173 1iqp_A RFCS; clamp loader, ext 99.7 2.1E-16 7E-21 150.5 16.8 186 167-407 23-215 (327)
174 1sxj_D Activator 1 41 kDa subu 99.7 1.2E-16 4E-21 154.0 15.0 187 167-408 35-239 (353)
175 3co5_A Putative two-component 99.7 2.1E-18 7.2E-23 143.6 2.3 133 170-343 5-142 (143)
176 2z4s_A Chromosomal replication 99.7 6E-17 2.1E-21 160.0 12.8 193 206-439 130-331 (440)
177 1sxj_B Activator 1 37 kDa subu 99.7 7.2E-16 2.5E-20 146.4 17.9 183 167-408 19-213 (323)
178 3lvq_E ARF-GAP with SH3 domain 99.7 8.1E-17 2.8E-21 162.3 11.4 108 2-115 153-270 (497)
179 2p65_A Hypothetical protein PF 99.7 2.3E-17 7.9E-22 143.6 6.4 159 167-344 20-187 (187)
180 3k1j_A LON protease, ATP-depen 99.7 9.3E-17 3.2E-21 165.1 11.8 147 264-439 196-374 (604)
181 1jr3_A DNA polymerase III subu 99.7 1.7E-15 5.9E-20 146.9 19.2 186 167-408 14-225 (373)
182 2qby_A CDC6 homolog 1, cell di 99.7 1.6E-16 5.4E-21 154.8 11.8 229 169-441 20-273 (386)
183 1fnn_A CDC6P, cell division co 99.7 1.4E-15 4.7E-20 148.4 18.0 226 169-440 17-274 (389)
184 2zgd_A 3 repeat synthetic anky 99.7 1.1E-16 3.6E-21 127.0 7.3 87 12-104 23-109 (110)
185 3ehr_A Osteoclast-stimulating 99.7 3.1E-17 1E-21 147.3 4.6 112 2-118 94-206 (222)
186 2zgd_A 3 repeat synthetic anky 99.7 3.4E-16 1.2E-20 124.0 10.1 93 40-138 17-109 (110)
187 2aja_A Ankyrin repeat family p 99.7 1.5E-17 5E-22 160.9 2.5 126 12-144 91-224 (376)
188 1dcq_A PYK2-associated protein 99.7 3.6E-16 1.2E-20 145.3 11.8 94 11-110 167-263 (278)
189 3f9v_A Minichromosome maintena 99.7 8.2E-17 2.8E-21 164.4 7.9 210 207-441 328-588 (595)
190 1sxj_C Activator 1 40 kDa subu 99.6 4.5E-15 1.5E-19 142.1 17.0 181 167-406 23-214 (340)
191 2aja_A Ankyrin repeat family p 99.6 2.1E-17 7.2E-22 159.8 0.4 122 12-148 127-254 (376)
192 3deo_A Signal recognition part 99.6 3.3E-16 1.1E-20 136.1 7.0 107 47-159 43-150 (183)
193 3jue_A Arfgap with coiled-coil 99.6 8.2E-16 2.8E-20 148.1 10.1 115 2-122 221-341 (368)
194 1sxj_E Activator 1 40 kDa subu 99.6 3E-15 1E-19 144.2 12.8 188 167-409 12-242 (354)
195 3ui2_A Signal recognition part 99.6 6.1E-16 2.1E-20 141.0 6.9 136 12-158 14-150 (244)
196 1a5t_A Delta prime, HOLB; zinc 99.5 4.2E-13 1.4E-17 127.8 16.8 132 205-356 23-180 (334)
197 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 3.5E-14 1.2E-18 141.1 9.1 151 170-356 23-196 (500)
198 2gno_A DNA polymerase III, gam 99.5 3.3E-13 1.1E-17 126.3 13.0 143 173-356 1-152 (305)
199 1w5s_A Origin recognition comp 99.4 2E-12 6.7E-17 127.0 15.3 213 170-409 23-271 (412)
200 3f8t_A Predicted ATPase involv 99.3 1.4E-11 4.6E-16 119.1 10.7 234 164-441 208-484 (506)
201 2w58_A DNAI, primosome compone 99.0 8.4E-10 2.9E-14 97.0 8.7 71 206-282 54-128 (202)
202 4akg_A Glutathione S-transfera 99.0 5.7E-10 1.9E-14 129.2 8.8 139 206-359 1267-1434(2695)
203 2qen_A Walker-type ATPase; unk 98.9 4.1E-08 1.4E-12 93.7 16.4 158 170-358 13-218 (350)
204 3ec2_A DNA replication protein 98.9 1.6E-09 5.3E-14 93.4 5.7 71 205-281 37-112 (180)
205 2kjq_A DNAA-related protein; s 98.9 3.9E-09 1.3E-13 87.8 7.3 63 205-283 35-97 (149)
206 3cmw_A Protein RECA, recombina 98.9 7.7E-09 2.6E-13 115.0 11.6 149 162-315 1013-1216(1706)
207 2fna_A Conserved hypothetical 98.8 1.3E-07 4.5E-12 90.3 16.2 138 207-357 31-223 (357)
208 1jr3_D DNA polymerase III, del 98.8 3.8E-08 1.3E-12 93.9 11.7 181 205-439 17-208 (343)
209 2qgz_A Helicase loader, putati 98.7 1.7E-08 5.8E-13 94.6 7.3 73 206-282 152-227 (308)
210 2r2a_A Uncharacterized protein 98.6 5.9E-08 2E-12 84.5 7.6 128 205-343 4-153 (199)
211 1tue_A Replication protein E1; 98.6 6.1E-08 2.1E-12 83.5 5.4 26 206-231 58-83 (212)
212 1u0j_A DNA replication protein 98.5 8.9E-08 3E-12 86.4 4.7 25 206-230 104-128 (267)
213 3vkg_A Dynein heavy chain, cyt 98.4 9.8E-07 3.4E-11 103.3 13.2 140 205-359 1303-1472(3245)
214 2vhj_A Ntpase P4, P4; non- hyd 98.4 4.6E-07 1.6E-11 83.8 8.2 104 207-317 124-235 (331)
215 4akg_A Glutathione S-transfera 98.4 2.6E-07 9E-12 107.4 7.7 121 207-353 646-790 (2695)
216 1ye8_A Protein THEP1, hypothet 98.3 3.2E-06 1.1E-10 72.2 10.7 24 208-231 2-25 (178)
217 3cmu_A Protein RECA, recombina 98.1 5.6E-06 1.9E-10 93.5 9.6 109 203-315 1424-1561(2050)
218 2orw_A Thymidine kinase; TMTK, 98.1 3E-06 1E-10 72.8 5.3 25 207-231 4-28 (184)
219 3vkg_A Dynein heavy chain, cyt 98.0 1.1E-05 3.8E-10 94.7 9.4 121 207-353 605-750 (3245)
220 3e1s_A Exodeoxyribonuclease V, 97.9 3.4E-05 1.2E-09 78.2 9.1 93 206-313 204-313 (574)
221 3upu_A ATP-dependent DNA helic 97.8 8.6E-05 2.9E-09 73.5 11.6 93 207-313 46-162 (459)
222 2b8t_A Thymidine kinase; deoxy 97.8 8.3E-05 2.9E-09 65.6 9.3 28 207-234 13-40 (223)
223 3kl4_A SRP54, signal recogniti 97.7 0.0012 4.1E-08 64.1 16.6 30 205-234 96-125 (433)
224 3crm_A TRNA delta(2)-isopenten 97.7 4.5E-05 1.5E-09 71.0 6.2 98 207-317 6-104 (323)
225 3kw6_A 26S protease regulatory 97.7 5.9E-05 2E-09 54.6 5.4 75 341-442 1-75 (78)
226 2krk_A 26S protease regulatory 97.7 3.4E-05 1.2E-09 56.9 4.0 77 339-442 7-83 (86)
227 3dm5_A SRP54, signal recogniti 97.6 0.002 6.7E-08 62.6 16.8 30 205-234 99-128 (443)
228 1qhx_A CPT, protein (chloramph 97.6 3.1E-05 1.1E-09 65.9 3.2 37 206-249 3-39 (178)
229 2w0m_A SSO2452; RECA, SSPF, un 97.5 0.00035 1.2E-08 61.9 9.7 27 205-231 22-48 (235)
230 3trf_A Shikimate kinase, SK; a 97.4 8.3E-05 2.8E-09 63.6 3.3 27 206-232 5-31 (185)
231 1xp8_A RECA protein, recombina 97.4 0.00063 2.2E-08 64.8 9.5 76 205-284 73-167 (366)
232 3vaa_A Shikimate kinase, SK; s 97.4 0.0001 3.5E-09 64.0 3.7 29 204-232 23-51 (199)
233 2fz4_A DNA repair protein RAD2 97.3 0.00046 1.6E-08 61.7 7.8 23 208-230 110-132 (237)
234 3foz_A TRNA delta(2)-isopenten 97.3 0.00029 1E-08 64.8 6.3 98 206-316 10-108 (316)
235 1w36_D RECD, exodeoxyribonucle 97.3 0.0012 4E-08 67.6 11.5 27 206-232 164-190 (608)
236 2dr3_A UPF0273 protein PH0284; 97.3 0.0016 5.5E-08 58.1 11.2 28 205-232 22-49 (247)
237 2i3b_A HCR-ntpase, human cance 97.3 0.00041 1.4E-08 59.6 6.4 27 208-234 3-29 (189)
238 3sr0_A Adenylate kinase; phosp 97.2 0.00022 7.5E-09 62.2 4.5 24 208-231 2-25 (206)
239 2zr9_A Protein RECA, recombina 97.2 0.00038 1.3E-08 66.0 6.0 75 205-283 60-153 (349)
240 3exa_A TRNA delta(2)-isopenten 97.2 0.00038 1.3E-08 64.1 5.7 25 207-231 4-28 (322)
241 2ga8_A Hypothetical 39.9 kDa p 97.2 0.00021 7.2E-09 67.1 3.9 28 205-232 23-50 (359)
242 2rhm_A Putative kinase; P-loop 97.2 0.00023 7.9E-09 61.2 4.0 28 205-232 4-31 (193)
243 3hr8_A Protein RECA; alpha and 97.2 0.0034 1.2E-07 59.3 12.3 74 206-283 61-153 (356)
244 1zuh_A Shikimate kinase; alpha 97.2 0.0002 6.7E-09 60.2 3.4 28 205-232 6-33 (168)
245 1u94_A RECA protein, recombina 97.2 0.0005 1.7E-08 65.2 6.5 75 205-283 62-155 (356)
246 2a5y_B CED-4; apoptosis; HET: 97.2 0.0014 4.9E-08 66.2 10.2 44 172-228 131-174 (549)
247 3kb2_A SPBC2 prophage-derived 97.2 0.00022 7.7E-09 60.0 3.7 25 208-232 3-27 (173)
248 2iyv_A Shikimate kinase, SK; t 97.2 0.0002 7E-09 61.1 3.4 26 207-232 3-28 (184)
249 1svm_A Large T antigen; AAA+ f 97.2 0.00087 3E-08 64.0 8.0 64 203-283 166-230 (377)
250 1y63_A LMAJ004144AAA protein; 97.2 0.00019 6.4E-09 61.5 3.0 25 205-229 9-33 (184)
251 3iij_A Coilin-interacting nucl 97.1 0.00023 7.8E-09 60.6 3.5 28 205-232 10-37 (180)
252 2cdn_A Adenylate kinase; phosp 97.1 0.00028 9.7E-09 61.2 4.1 30 203-232 17-46 (201)
253 1z6t_A APAF-1, apoptotic prote 97.1 0.0027 9.2E-08 64.8 11.9 46 170-229 125-170 (591)
254 2eyu_A Twitching motility prot 97.1 0.0019 6.4E-08 58.5 9.5 28 205-232 24-51 (261)
255 1via_A Shikimate kinase; struc 97.1 0.00026 9.1E-09 59.9 3.5 25 208-232 6-30 (175)
256 1gvn_B Zeta; postsegregational 97.1 0.00061 2.1E-08 62.7 6.0 28 204-231 31-58 (287)
257 2cvh_A DNA repair and recombin 97.1 0.00079 2.7E-08 59.1 6.5 24 205-228 19-42 (220)
258 1nks_A Adenylate kinase; therm 97.1 0.00035 1.2E-08 59.9 4.1 38 208-249 3-40 (194)
259 3eph_A TRNA isopentenyltransfe 97.1 0.00038 1.3E-08 66.4 4.6 26 207-232 3-28 (409)
260 1xx6_A Thymidine kinase; NESG, 97.1 0.0023 7.7E-08 54.9 8.9 25 208-232 10-34 (191)
261 3a8t_A Adenylate isopentenyltr 97.0 0.00028 9.5E-09 65.8 3.3 26 207-232 41-66 (339)
262 3jvv_A Twitching mobility prot 97.0 0.0033 1.1E-07 59.6 10.7 27 206-232 123-149 (356)
263 1ex7_A Guanylate kinase; subst 97.0 0.00049 1.7E-08 58.8 4.5 24 207-230 2-25 (186)
264 3umf_A Adenylate kinase; rossm 97.0 0.00086 2.9E-08 58.8 6.1 27 205-231 28-54 (217)
265 1kag_A SKI, shikimate kinase I 97.0 0.00035 1.2E-08 58.9 3.3 26 206-231 4-29 (173)
266 4a74_A DNA repair and recombin 97.0 0.00085 2.9E-08 59.3 5.9 25 206-230 25-49 (231)
267 3ney_A 55 kDa erythrocyte memb 97.0 0.00067 2.3E-08 58.4 4.9 26 205-230 18-43 (197)
268 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.00063 2.2E-08 61.7 5.1 41 206-250 4-44 (260)
269 2z43_A DNA repair and recombin 97.0 0.00094 3.2E-08 62.7 6.4 26 205-230 106-131 (324)
270 1aky_A Adenylate kinase; ATP:A 97.0 0.00042 1.4E-08 61.1 3.7 28 205-232 3-30 (220)
271 2r8r_A Sensor protein; KDPD, P 97.0 0.0015 5.2E-08 57.2 7.1 30 206-235 6-35 (228)
272 1n0w_A DNA repair protein RAD5 97.0 0.0012 4.2E-08 58.8 6.8 25 205-229 23-47 (243)
273 2iut_A DNA translocase FTSK; n 97.0 0.0039 1.3E-07 62.3 10.8 76 271-353 345-420 (574)
274 2ze6_A Isopentenyl transferase 97.0 0.0004 1.4E-08 62.7 3.5 25 208-232 3-27 (253)
275 3t61_A Gluconokinase; PSI-biol 97.0 0.00053 1.8E-08 59.5 4.1 27 206-232 18-44 (202)
276 1qf9_A UMP/CMP kinase, protein 97.0 0.00036 1.2E-08 59.9 3.0 28 205-232 5-32 (194)
277 1kht_A Adenylate kinase; phosp 96.9 0.00052 1.8E-08 58.8 3.9 26 207-232 4-29 (192)
278 2c95_A Adenylate kinase 1; tra 96.9 0.00039 1.3E-08 59.9 3.1 28 205-232 8-35 (196)
279 2vli_A Antibiotic resistance p 96.9 0.00037 1.3E-08 59.3 2.8 27 206-232 5-31 (183)
280 1e6c_A Shikimate kinase; phosp 96.9 0.00044 1.5E-08 58.2 3.2 26 207-232 3-28 (173)
281 2ehv_A Hypothetical protein PH 96.9 0.0026 8.8E-08 56.9 8.4 24 205-228 29-52 (251)
282 2yvu_A Probable adenylyl-sulfa 96.9 0.0011 3.6E-08 56.7 5.5 29 205-233 12-40 (186)
283 2pt5_A Shikimate kinase, SK; a 96.9 0.00051 1.7E-08 57.6 3.4 25 208-232 2-26 (168)
284 1nlf_A Regulatory protein REPA 96.9 0.0068 2.3E-07 55.4 11.3 27 205-231 29-55 (279)
285 1ly1_A Polynucleotide kinase; 96.9 0.00047 1.6E-08 58.4 3.1 22 207-228 3-24 (181)
286 1nn5_A Similar to deoxythymidy 96.9 0.00076 2.6E-08 59.0 4.6 30 205-234 8-37 (215)
287 3tlx_A Adenylate kinase 2; str 96.9 0.00086 2.9E-08 60.1 4.9 28 204-231 27-54 (243)
288 1ak2_A Adenylate kinase isoenz 96.9 0.00065 2.2E-08 60.5 4.1 28 205-232 15-42 (233)
289 3cmu_A Protein RECA, recombina 96.9 0.0031 1E-07 71.7 10.3 76 204-283 730-824 (2050)
290 3be4_A Adenylate kinase; malar 96.9 0.00045 1.6E-08 60.8 3.0 27 206-232 5-31 (217)
291 1tev_A UMP-CMP kinase; ploop, 96.9 0.00041 1.4E-08 59.6 2.5 27 206-232 3-29 (196)
292 1zak_A Adenylate kinase; ATP:A 96.9 0.00055 1.9E-08 60.4 3.4 28 205-232 4-31 (222)
293 3aji_B S6C, proteasome (prosom 96.8 0.00074 2.5E-08 49.3 3.3 74 343-443 1-74 (83)
294 3fb4_A Adenylate kinase; psych 96.8 0.00057 1.9E-08 60.0 3.2 25 208-232 2-26 (216)
295 2bwj_A Adenylate kinase 5; pho 96.8 0.00055 1.9E-08 59.1 3.0 27 206-232 12-38 (199)
296 2p5t_B PEZT; postsegregational 96.8 0.00056 1.9E-08 61.7 3.1 28 204-231 30-57 (253)
297 3dl0_A Adenylate kinase; phosp 96.8 0.00047 1.6E-08 60.5 2.5 24 208-231 2-25 (216)
298 3lw7_A Adenylate kinase relate 96.8 0.00046 1.6E-08 58.1 2.3 24 207-231 2-25 (179)
299 1zd8_A GTP:AMP phosphotransfer 96.8 0.00044 1.5E-08 61.3 2.2 28 205-232 6-33 (227)
300 3cm0_A Adenylate kinase; ATP-b 96.8 0.00054 1.9E-08 58.5 2.7 26 207-232 5-30 (186)
301 1zp6_A Hypothetical protein AT 96.8 0.00043 1.5E-08 59.4 1.9 25 205-229 8-32 (191)
302 1w4r_A Thymidine kinase; type 96.8 0.0021 7.3E-08 54.8 6.2 25 208-232 22-47 (195)
303 4eun_A Thermoresistant glucoki 96.8 0.00089 3E-08 58.0 3.9 27 205-231 28-54 (200)
304 3vlf_B 26S protease regulatory 96.8 0.00088 3E-08 49.5 3.3 72 344-442 2-73 (88)
305 2wwf_A Thymidilate kinase, put 96.7 0.0011 3.6E-08 57.9 4.4 30 205-234 9-38 (212)
306 1m7g_A Adenylylsulfate kinase; 96.7 0.0032 1.1E-07 54.9 7.3 41 205-249 24-65 (211)
307 3uie_A Adenylyl-sulfate kinase 96.7 0.00093 3.2E-08 57.9 3.6 28 205-232 24-51 (200)
308 1knq_A Gluconate kinase; ALFA/ 96.7 0.0011 3.6E-08 56.0 3.8 25 207-231 9-33 (175)
309 1ukz_A Uridylate kinase; trans 96.7 0.00071 2.4E-08 58.7 2.7 28 204-231 13-40 (203)
310 2plr_A DTMP kinase, probable t 96.7 0.00088 3E-08 58.4 3.3 27 206-232 4-30 (213)
311 2pez_A Bifunctional 3'-phospho 96.7 0.0019 6.5E-08 54.7 5.2 38 206-247 5-42 (179)
312 3cmw_A Protein RECA, recombina 96.7 0.0035 1.2E-07 70.4 8.5 77 203-283 729-824 (1706)
313 2pbr_A DTMP kinase, thymidylat 96.6 0.0021 7.2E-08 55.0 5.4 26 208-233 2-27 (195)
314 3llm_A ATP-dependent RNA helic 96.6 0.012 4.1E-07 52.2 10.5 21 207-227 77-97 (235)
315 1e4v_A Adenylate kinase; trans 96.6 0.0012 4E-08 57.9 3.6 25 208-232 2-26 (214)
316 2j9r_A Thymidine kinase; TK1, 96.6 0.0014 4.6E-08 57.0 3.9 26 209-234 31-56 (214)
317 1v5w_A DMC1, meiotic recombina 96.6 0.0028 9.4E-08 59.9 6.4 25 206-230 122-146 (343)
318 3lda_A DNA repair protein RAD5 96.6 0.0042 1.4E-07 59.8 7.7 25 205-229 177-201 (400)
319 3sfz_A APAF-1, apoptotic pepti 96.6 0.011 3.8E-07 65.6 12.2 47 170-230 125-171 (1249)
320 2ewv_A Twitching motility prot 96.6 0.0079 2.7E-07 57.4 9.4 28 205-232 135-162 (372)
321 1g5t_A COB(I)alamin adenosyltr 96.6 0.0074 2.5E-07 51.6 8.1 30 206-235 28-57 (196)
322 2qor_A Guanylate kinase; phosp 96.5 0.0012 4.1E-08 57.4 3.1 26 205-230 11-36 (204)
323 2axn_A 6-phosphofructo-2-kinas 96.5 0.0042 1.4E-07 62.1 7.4 29 206-234 35-63 (520)
324 2jaq_A Deoxyguanosine kinase; 96.5 0.0013 4.5E-08 56.9 3.3 25 208-232 2-26 (205)
325 2v54_A DTMP kinase, thymidylat 96.5 0.0018 6.1E-08 56.0 3.9 25 206-230 4-28 (204)
326 2z0h_A DTMP kinase, thymidylat 96.5 0.0027 9.2E-08 54.5 5.0 27 208-234 2-28 (197)
327 2xb4_A Adenylate kinase; ATP-b 96.5 0.0016 5.6E-08 57.4 3.6 24 208-231 2-25 (223)
328 3r20_A Cytidylate kinase; stru 96.5 0.0017 6E-08 57.4 3.8 28 205-232 8-35 (233)
329 1cke_A CK, MSSA, protein (cyti 96.4 0.0018 6.1E-08 57.1 3.7 27 206-232 5-31 (227)
330 2ius_A DNA translocase FTSK; n 96.4 0.0068 2.3E-07 60.0 8.2 77 271-354 299-375 (512)
331 3io5_A Recombination and repai 96.4 0.0076 2.6E-07 55.5 7.8 75 208-284 30-126 (333)
332 2bbw_A Adenylate kinase 4, AK4 96.4 0.0018 6.2E-08 58.0 3.6 28 205-232 26-53 (246)
333 3b6e_A Interferon-induced heli 96.4 0.0021 7E-08 56.1 3.7 24 207-230 49-72 (216)
334 1kgd_A CASK, peripheral plasma 96.4 0.0024 8.1E-08 54.3 3.9 25 206-230 5-29 (180)
335 2j41_A Guanylate kinase; GMP, 96.4 0.0021 7.2E-08 55.7 3.7 26 205-230 5-30 (207)
336 3nwj_A ATSK2; P loop, shikimat 96.3 0.0022 7.6E-08 57.5 3.7 27 206-232 48-74 (250)
337 3tau_A Guanylate kinase, GMP k 96.3 0.0025 8.5E-08 55.6 3.7 26 205-230 7-32 (208)
338 2px0_A Flagellar biosynthesis 96.3 0.031 1.1E-06 51.4 11.3 28 205-232 104-131 (296)
339 2i1q_A DNA repair and recombin 96.3 0.0048 1.6E-07 57.7 5.8 24 206-229 98-121 (322)
340 3ake_A Cytidylate kinase; CMP 96.2 0.0032 1.1E-07 54.6 4.2 25 208-232 4-28 (208)
341 3iuy_A Probable ATP-dependent 96.2 0.033 1.1E-06 48.9 10.8 44 271-321 169-213 (228)
342 2bdt_A BH3686; alpha-beta prot 96.1 0.0026 8.8E-08 54.4 3.0 21 208-228 4-24 (189)
343 2r6a_A DNAB helicase, replicat 96.1 0.018 6.1E-07 56.6 9.4 28 205-232 202-229 (454)
344 3zvl_A Bifunctional polynucleo 96.1 0.026 8.9E-07 54.7 10.4 26 205-230 257-282 (416)
345 1rz3_A Hypothetical protein rb 96.1 0.011 3.8E-07 51.0 7.1 28 205-232 21-48 (201)
346 1uj2_A Uridine-cytidine kinase 96.1 0.0023 8E-08 57.5 2.7 28 205-232 21-48 (252)
347 3c8u_A Fructokinase; YP_612366 96.1 0.0036 1.2E-07 54.5 3.7 28 205-232 21-48 (208)
348 2if2_A Dephospho-COA kinase; a 96.1 0.0021 7.2E-08 55.7 2.2 23 208-231 3-25 (204)
349 1qde_A EIF4A, translation init 96.1 0.054 1.8E-06 47.3 11.4 17 207-223 52-68 (224)
350 3tr0_A Guanylate kinase, GMP k 96.1 0.0041 1.4E-07 53.8 3.9 25 206-230 7-31 (205)
351 1uf9_A TT1252 protein; P-loop, 96.0 0.0031 1.1E-07 54.4 3.1 25 205-229 7-31 (203)
352 2grj_A Dephospho-COA kinase; T 96.0 0.0026 9E-08 54.6 2.5 25 208-232 14-38 (192)
353 2pt7_A CAG-ALFA; ATPase, prote 96.0 0.008 2.7E-07 56.4 6.0 26 206-231 171-196 (330)
354 1jjv_A Dephospho-COA kinase; P 96.0 0.0026 8.9E-08 55.2 2.5 21 208-228 4-24 (206)
355 1bif_A 6-phosphofructo-2-kinas 96.0 0.0091 3.1E-07 59.0 6.6 30 205-234 38-67 (469)
356 1vt4_I APAF-1 related killer D 96.0 0.026 8.8E-07 60.3 10.2 42 172-228 131-172 (1221)
357 1sky_E F1-ATPase, F1-ATP synth 96.0 0.0088 3E-07 58.3 6.1 27 206-232 151-177 (473)
358 3asz_A Uridine kinase; cytidin 96.0 0.0038 1.3E-07 54.4 3.3 26 206-231 6-31 (211)
359 3a00_A Guanylate kinase, GMP k 95.9 0.0042 1.4E-07 53.0 3.4 25 207-231 2-26 (186)
360 1lvg_A Guanylate kinase, GMP k 95.9 0.0044 1.5E-07 53.5 3.6 26 206-231 4-29 (198)
361 1vec_A ATP-dependent RNA helic 95.9 0.089 3E-06 45.1 11.7 44 271-321 148-192 (206)
362 1q3t_A Cytidylate kinase; nucl 95.9 0.0053 1.8E-07 54.5 3.8 30 203-232 13-42 (236)
363 1ltq_A Polynucleotide kinase; 95.8 0.0041 1.4E-07 57.5 3.1 23 207-229 3-25 (301)
364 3fmo_B ATP-dependent RNA helic 95.8 0.066 2.2E-06 49.3 11.3 46 271-322 237-283 (300)
365 4e22_A Cytidylate kinase; P-lo 95.8 0.0047 1.6E-07 55.6 3.3 27 206-232 27-53 (252)
366 2v3c_C SRP54, signal recogniti 95.8 0.035 1.2E-06 54.0 9.6 29 204-232 97-125 (432)
367 3bh0_A DNAB-like replicative h 95.8 0.057 1.9E-06 50.2 10.8 28 205-232 67-94 (315)
368 2va8_A SSO2462, SKI2-type heli 95.8 0.041 1.4E-06 57.4 10.9 20 206-225 46-65 (715)
369 4b3f_X DNA-binding protein smu 95.8 0.016 5.3E-07 59.8 7.5 37 207-248 206-243 (646)
370 1a7j_A Phosphoribulokinase; tr 95.7 0.0089 3E-07 54.9 4.9 27 206-232 5-31 (290)
371 3d3q_A TRNA delta(2)-isopenten 95.7 0.0043 1.5E-07 58.0 2.8 25 207-231 8-32 (340)
372 2h92_A Cytidylate kinase; ross 95.7 0.0052 1.8E-07 53.8 3.2 27 206-232 3-29 (219)
373 3ly5_A ATP-dependent RNA helic 95.7 0.064 2.2E-06 48.3 10.5 45 271-322 203-248 (262)
374 1vht_A Dephospho-COA kinase; s 95.7 0.0049 1.7E-07 54.0 2.9 23 206-228 4-26 (218)
375 3gmt_A Adenylate kinase; ssgci 95.7 0.024 8.3E-07 49.8 7.2 26 207-232 9-34 (230)
376 1gtv_A TMK, thymidylate kinase 95.7 0.0029 9.8E-08 55.2 1.3 25 208-232 2-26 (214)
377 2qt1_A Nicotinamide riboside k 95.7 0.0057 1.9E-07 53.1 3.1 26 205-230 20-45 (207)
378 2orv_A Thymidine kinase; TP4A 95.6 0.028 9.5E-07 49.2 7.4 92 208-317 21-125 (234)
379 4eaq_A DTMP kinase, thymidylat 95.6 0.0071 2.4E-07 53.5 3.7 28 205-232 25-52 (229)
380 1t6n_A Probable ATP-dependent 95.6 0.054 1.8E-06 47.1 9.5 23 207-229 52-74 (220)
381 2gxq_A Heat resistant RNA depe 95.6 0.049 1.7E-06 46.8 9.0 18 207-224 39-56 (207)
382 2q6t_A DNAB replication FORK h 95.6 0.025 8.5E-07 55.4 7.8 28 205-232 199-226 (444)
383 1xjc_A MOBB protein homolog; s 95.6 0.018 6E-07 48.1 5.7 29 206-234 4-32 (169)
384 3b9q_A Chloroplast SRP recepto 95.6 0.014 4.6E-07 54.0 5.5 30 203-232 97-126 (302)
385 1zu4_A FTSY; GTPase, signal re 95.6 0.049 1.7E-06 50.7 9.3 31 203-233 102-132 (320)
386 2f6r_A COA synthase, bifunctio 95.6 0.0067 2.3E-07 55.5 3.4 23 206-228 75-97 (281)
387 2qmh_A HPR kinase/phosphorylas 95.5 0.0054 1.8E-07 52.5 2.4 25 206-230 34-58 (205)
388 3pey_A ATP-dependent RNA helic 95.5 0.089 3.1E-06 50.0 11.5 22 205-226 43-64 (395)
389 1z6g_A Guanylate kinase; struc 95.5 0.0081 2.8E-07 52.7 3.6 27 204-230 21-47 (218)
390 2zj8_A DNA helicase, putative 95.5 0.067 2.3E-06 55.8 11.2 19 206-224 39-57 (720)
391 3ber_A Probable ATP-dependent 95.5 0.074 2.5E-06 47.4 10.1 18 207-224 81-98 (249)
392 3bor_A Human initiation factor 95.5 0.037 1.3E-06 49.0 8.0 17 207-223 68-84 (237)
393 1odf_A YGR205W, hypothetical 3 95.5 0.0089 3E-07 54.9 4.0 29 204-232 29-57 (290)
394 3lv8_A DTMP kinase, thymidylat 95.5 0.012 4E-07 52.3 4.4 31 205-235 26-56 (236)
395 3vkw_A Replicase large subunit 95.4 0.029 9.8E-07 54.3 7.3 22 207-228 162-183 (446)
396 1vma_A Cell division protein F 95.4 0.022 7.5E-07 52.7 6.2 29 204-232 102-130 (306)
397 2j37_W Signal recognition part 95.4 0.21 7.2E-06 49.4 13.5 31 204-234 99-129 (504)
398 4gp7_A Metallophosphoesterase; 95.3 0.0077 2.6E-07 50.6 2.7 21 206-226 9-29 (171)
399 1x6v_B Bifunctional 3'-phospho 95.3 0.024 8.1E-07 57.5 6.6 40 205-248 51-90 (630)
400 3fdi_A Uncharacterized protein 95.3 0.0081 2.8E-07 52.0 2.8 26 207-232 7-32 (201)
401 3lnc_A Guanylate kinase, GMP k 95.3 0.0061 2.1E-07 53.9 2.1 27 204-230 25-52 (231)
402 2jeo_A Uridine-cytidine kinase 95.3 0.01 3.5E-07 53.0 3.5 28 205-232 24-51 (245)
403 3h1t_A Type I site-specific re 95.3 0.077 2.6E-06 53.9 10.4 27 206-232 198-224 (590)
404 2fwr_A DNA repair protein RAD2 95.2 0.045 1.5E-06 53.9 8.4 24 207-230 109-132 (472)
405 2z0m_A 337AA long hypothetical 95.2 0.064 2.2E-06 49.8 9.1 22 207-228 32-53 (337)
406 4edh_A DTMP kinase, thymidylat 95.2 0.019 6.6E-07 50.0 5.1 30 206-235 6-35 (213)
407 1s96_A Guanylate kinase, GMP k 95.2 0.012 4.2E-07 51.5 3.8 27 205-231 15-41 (219)
408 2yhs_A FTSY, cell division pro 95.2 0.068 2.3E-06 52.4 9.3 32 201-232 288-319 (503)
409 3dkp_A Probable ATP-dependent 95.2 0.11 3.6E-06 46.1 10.0 17 207-223 67-83 (245)
410 1znw_A Guanylate kinase, GMP k 95.2 0.013 4.3E-07 50.9 3.7 27 205-231 19-45 (207)
411 1np6_A Molybdopterin-guanine d 95.2 0.019 6.4E-07 48.3 4.6 28 206-233 6-33 (174)
412 2og2_A Putative signal recogni 95.1 0.02 6.9E-07 54.1 5.2 30 203-232 154-183 (359)
413 1rj9_A FTSY, signal recognitio 95.1 0.015 5.3E-07 53.7 4.3 28 205-232 101-128 (304)
414 2v9p_A Replication protein E1; 95.1 0.013 4.3E-07 54.1 3.7 28 203-230 123-150 (305)
415 3tqc_A Pantothenate kinase; bi 95.1 0.013 4.5E-07 54.4 3.9 28 205-232 91-118 (321)
416 3aez_A Pantothenate kinase; tr 95.1 0.014 4.7E-07 54.2 4.0 28 205-232 89-116 (312)
417 2pl3_A Probable ATP-dependent 95.1 0.22 7.5E-06 43.7 11.7 44 271-321 173-217 (236)
418 1htw_A HI0065; nucleotide-bind 95.1 0.01 3.5E-07 49.1 2.7 26 205-230 32-57 (158)
419 3bgw_A DNAB-like replicative h 95.1 0.081 2.8E-06 51.6 9.6 28 205-232 196-223 (444)
420 3fe2_A Probable ATP-dependent 95.1 0.2 7E-06 44.2 11.5 44 271-321 178-222 (242)
421 3fht_A ATP-dependent RNA helic 95.1 0.062 2.1E-06 51.6 8.7 19 205-223 63-81 (412)
422 2xxa_A Signal recognition part 95.0 0.28 9.7E-06 47.5 13.0 30 204-233 98-127 (433)
423 1hv8_A Putative ATP-dependent 95.0 0.064 2.2E-06 50.5 8.4 23 207-229 45-67 (367)
424 1s2m_A Putative ATP-dependent 95.0 0.088 3E-06 50.3 9.4 21 207-227 59-79 (400)
425 3ld9_A DTMP kinase, thymidylat 95.0 0.017 5.7E-07 50.7 3.8 30 205-234 20-50 (223)
426 2oxc_A Probable ATP-dependent 95.0 0.12 4.2E-06 45.3 9.6 45 271-321 168-213 (230)
427 3v9p_A DTMP kinase, thymidylat 94.9 0.017 5.7E-07 50.9 3.8 28 206-233 25-52 (227)
428 2p6r_A Afuhel308 helicase; pro 94.9 0.1 3.6E-06 54.2 10.5 20 206-225 40-59 (702)
429 3l9o_A ATP-dependent RNA helic 94.9 0.16 5.3E-06 55.5 12.0 100 206-316 199-331 (1108)
430 3thx_B DNA mismatch repair pro 94.9 0.16 5.3E-06 54.1 11.5 25 206-230 673-697 (918)
431 1cr0_A DNA primase/helicase; R 94.8 0.018 6.3E-07 52.9 4.0 29 204-232 33-61 (296)
432 3hdt_A Putative kinase; struct 94.8 0.015 5.2E-07 51.1 3.2 26 207-232 15-40 (223)
433 1rif_A DAR protein, DNA helica 94.8 0.052 1.8E-06 49.4 7.0 23 208-230 130-152 (282)
434 2xgj_A ATP-dependent RNA helic 94.8 0.2 6.7E-06 54.2 12.4 21 207-227 102-122 (1010)
435 3tqf_A HPR(Ser) kinase; transf 94.8 0.015 5.3E-07 48.3 2.9 23 206-228 16-38 (181)
436 3fmp_B ATP-dependent RNA helic 94.8 0.058 2E-06 53.2 7.7 19 205-223 130-148 (479)
437 1m8p_A Sulfate adenylyltransfe 94.8 0.019 6.6E-07 57.9 4.2 41 205-249 395-436 (573)
438 4a4z_A Antiviral helicase SKI2 94.7 0.17 5.9E-06 54.6 11.7 24 207-230 55-78 (997)
439 4tmk_A Protein (thymidylate ki 94.7 0.027 9.3E-07 49.1 4.5 28 207-234 4-31 (213)
440 3thx_A DNA mismatch repair pro 94.7 0.12 4.2E-06 55.0 10.2 23 207-229 663-685 (934)
441 1g8f_A Sulfate adenylyltransfe 94.7 0.014 4.9E-07 57.7 2.9 27 206-232 395-421 (511)
442 2ocp_A DGK, deoxyguanosine kin 94.6 0.014 4.8E-07 51.9 2.5 26 206-231 2-27 (241)
443 1q0u_A Bstdead; DEAD protein, 94.6 0.099 3.4E-06 45.4 7.9 44 271-321 152-196 (219)
444 3e70_C DPA, signal recognition 94.5 0.023 8E-07 53.0 3.9 28 205-232 128-155 (328)
445 3tmk_A Thymidylate kinase; pho 94.5 0.026 9E-07 49.2 3.9 27 206-232 5-31 (216)
446 1sq5_A Pantothenate kinase; P- 94.4 0.023 7.9E-07 52.7 3.6 27 205-231 79-105 (308)
447 3kta_A Chromosome segregation 94.4 0.021 7E-07 48.2 3.0 25 207-231 27-51 (182)
448 3fho_A ATP-dependent RNA helic 94.3 0.2 6.8E-06 49.9 10.4 19 206-224 158-176 (508)
449 2gks_A Bifunctional SAT/APS ki 94.3 0.032 1.1E-06 56.0 4.5 40 206-249 372-411 (546)
450 2j0s_A ATP-dependent RNA helic 94.3 0.09 3.1E-06 50.5 7.7 19 207-225 75-93 (410)
451 1wb9_A DNA mismatch repair pro 94.3 0.27 9.3E-06 51.5 11.7 24 207-230 608-631 (800)
452 2f1r_A Molybdopterin-guanine d 94.3 0.016 5.5E-07 48.6 2.0 26 207-232 3-28 (171)
453 3eiq_A Eukaryotic initiation f 94.3 0.13 4.5E-06 49.3 8.8 19 207-225 78-96 (414)
454 2xau_A PRE-mRNA-splicing facto 94.2 0.15 5.1E-06 53.5 9.6 22 207-228 110-131 (773)
455 3b85_A Phosphate starvation-in 94.2 0.024 8.4E-07 49.2 3.1 23 207-229 23-45 (208)
456 2ged_A SR-beta, signal recogni 94.2 0.049 1.7E-06 46.1 4.9 26 204-229 46-71 (193)
457 1xti_A Probable ATP-dependent 94.2 0.21 7E-06 47.5 9.8 21 207-227 46-66 (391)
458 1wp9_A ATP-dependent RNA helic 94.1 0.27 9.2E-06 47.9 10.9 23 208-230 25-47 (494)
459 1p5z_B DCK, deoxycytidine kina 94.1 0.0083 2.9E-07 54.2 -0.2 26 205-230 23-48 (263)
460 1nrj_B SR-beta, signal recogni 94.1 0.033 1.1E-06 48.4 3.7 26 204-229 10-35 (218)
461 3ice_A Transcription terminati 94.1 0.071 2.4E-06 50.5 6.0 30 203-232 171-200 (422)
462 2gk6_A Regulator of nonsense t 94.1 0.029 9.8E-07 57.5 3.7 25 207-231 196-220 (624)
463 3cr8_A Sulfate adenylyltranfer 94.0 0.019 6.5E-07 57.6 2.2 28 205-232 368-395 (552)
464 2zts_A Putative uncharacterize 94.0 0.03 1E-06 49.8 3.3 25 205-229 29-53 (251)
465 3e2i_A Thymidine kinase; Zn-bi 94.0 0.2 6.7E-06 43.4 8.1 23 208-230 30-53 (219)
466 3tif_A Uncharacterized ABC tra 93.8 0.031 1.1E-06 49.5 3.0 25 205-229 30-54 (235)
467 2onk_A Molybdate/tungstate ABC 93.7 0.037 1.3E-06 49.2 3.3 26 204-230 23-48 (240)
468 1qzm_A ATP-dependent protease 93.7 0.077 2.6E-06 39.2 4.4 89 341-438 1-90 (94)
469 3ihw_A Centg3; RAS, centaurin, 93.7 0.043 1.5E-06 46.4 3.5 23 206-228 20-42 (184)
470 1wrb_A DJVLGB; RNA helicase, D 93.7 0.32 1.1E-05 43.2 9.5 18 207-224 61-78 (253)
471 1pzn_A RAD51, DNA repair and r 93.6 0.033 1.1E-06 52.6 3.0 26 205-230 130-155 (349)
472 2cbz_A Multidrug resistance-as 93.6 0.035 1.2E-06 49.3 3.0 26 205-230 30-55 (237)
473 2pcj_A ABC transporter, lipopr 93.6 0.033 1.1E-06 49.0 2.7 25 205-229 29-53 (224)
474 3sop_A Neuronal-specific septi 93.6 0.04 1.4E-06 50.0 3.3 23 208-230 4-26 (270)
475 2wsm_A Hydrogenase expression/ 93.5 0.074 2.5E-06 46.2 5.0 26 206-231 30-55 (221)
476 1oix_A RAS-related protein RAB 93.5 0.037 1.3E-06 47.1 2.9 23 207-229 30-52 (191)
477 2oca_A DAR protein, ATP-depend 93.5 0.11 3.6E-06 51.8 6.6 24 207-230 129-152 (510)
478 3hjn_A DTMP kinase, thymidylat 93.5 0.09 3.1E-06 45.1 5.3 28 208-235 2-29 (197)
479 2f9l_A RAB11B, member RAS onco 93.4 0.041 1.4E-06 47.0 3.1 23 207-229 6-28 (199)
480 1c9k_A COBU, adenosylcobinamid 93.4 0.038 1.3E-06 46.5 2.7 21 209-229 2-22 (180)
481 1ewq_A DNA mismatch repair pro 93.4 0.34 1.2E-05 50.5 10.4 24 208-231 578-601 (765)
482 1fuu_A Yeast initiation factor 93.4 0.14 4.9E-06 48.6 7.2 18 207-224 59-76 (394)
483 2v6i_A RNA helicase; membrane, 93.3 0.16 5.6E-06 49.3 7.5 21 207-227 3-24 (431)
484 1lw7_A Transcriptional regulat 93.3 0.034 1.2E-06 52.9 2.5 26 206-231 170-195 (365)
485 1sgw_A Putative ABC transporte 93.3 0.034 1.2E-06 48.4 2.3 25 205-229 34-58 (214)
486 4a1f_A DNAB helicase, replicat 93.3 0.092 3.1E-06 49.1 5.4 29 204-232 44-72 (338)
487 1b0u_A Histidine permease; ABC 93.3 0.042 1.4E-06 49.6 3.0 26 205-230 31-56 (262)
488 3fvq_A Fe(3+) IONS import ATP- 93.3 0.046 1.6E-06 51.6 3.3 26 205-230 29-54 (359)
489 2dyk_A GTP-binding protein; GT 93.3 0.048 1.6E-06 44.5 3.2 22 208-229 3-24 (161)
490 2wjy_A Regulator of nonsense t 93.3 0.047 1.6E-06 57.4 3.7 25 207-231 372-396 (800)
491 2zej_A Dardarin, leucine-rich 93.2 0.04 1.4E-06 46.5 2.6 22 207-228 3-24 (184)
492 1z2a_A RAS-related protein RAB 93.2 0.039 1.3E-06 45.3 2.5 24 206-229 5-28 (168)
493 1p9r_A General secretion pathw 93.2 0.049 1.7E-06 52.6 3.4 26 206-231 167-192 (418)
494 2zu0_C Probable ATP-dependent 93.2 0.055 1.9E-06 48.9 3.5 26 204-229 44-69 (267)
495 2olj_A Amino acid ABC transpor 93.1 0.047 1.6E-06 49.2 3.0 27 204-230 48-74 (263)
496 1j8m_F SRP54, signal recogniti 93.1 0.12 4E-06 47.6 5.7 28 206-233 98-125 (297)
497 3gfo_A Cobalt import ATP-bindi 93.1 0.038 1.3E-06 50.2 2.3 26 205-230 33-58 (275)
498 2hf9_A Probable hydrogenase ni 93.1 0.088 3E-06 45.9 4.7 27 205-231 37-63 (226)
499 2d2e_A SUFC protein; ABC-ATPas 93.0 0.055 1.9E-06 48.4 3.3 25 205-229 28-52 (250)
500 2wji_A Ferrous iron transport 93.0 0.05 1.7E-06 44.9 2.8 22 207-228 4-25 (165)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-37 Score=292.49 Aligned_cols=236 Identities=19% Similarity=0.280 Sum_probs=194.7
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
...|++|+|.++++++|++ .+.+|..+++.+...+..+|.++|||||||||||++|+++|.+++. +|+.+
T Consensus 144 ~v~~~dIgGl~~~k~~l~e---~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~-------~f~~v 213 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKE---VIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC-------KFIRV 213 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHH---HTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC-------EEEEE
T ss_pred CCCHHHhCCHHHHHHHHHH---HHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC-------CceEE
Confidence 4578999999999999998 4667777888877778889999999999999999999999999988 99999
Q ss_pred ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCc---hhHHHHHHHHHhhccC----CcEEEEEe
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDK---DYGIEALEEIMSVMDG----GKVVVIFA 314 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~---~~~~~~~~~ll~~~~~----~~~~~i~a 314 (445)
+++++.++|+|++++.++.+|..| .+|||||||||.++++|..++. ......+++||..||+ ..++||+|
T Consensus 214 ~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaA 293 (405)
T 4b4t_J 214 SGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMA 293 (405)
T ss_dssp EGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEE
T ss_pred EhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEec
Confidence 999999999999999999999877 4699999999999998865432 2345678889988875 56788888
Q ss_pred cCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316 315 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 392 (445)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 392 (445)
|+..... ||+|+| |||..|+||.|+.++|.+||+.++++. .+..+++.+.++..+.++
T Consensus 294 TNrpd~L-----DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~---------~l~~dvdl~~lA~~t~G~------ 353 (405)
T 4b4t_J 294 TNRLDIL-----DPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM---------NLTRGINLRKVAEKMNGC------ 353 (405)
T ss_dssp ESCSSSS-----CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS---------BCCSSCCHHHHHHHCCSC------
T ss_pred cCChhhC-----CHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCC---------CCCccCCHHHHHHHCCCC------
Confidence 7765443 999998 999999999999999999999999875 456677777777655444
Q ss_pred cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHh
Q 013316 393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 442 (445)
Q Consensus 393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 442 (445)
+++++++++..|...... ++...|+.+||..|++++.+
T Consensus 354 ---SGADi~~l~~eA~~~Air---------~~~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 354 ---SGADVKGVCTEAGMYALR---------ERRIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp ---CHHHHHHHHHHHHHHHHH---------TTCSBCCHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHHH---------cCCCCcCHHHHHHHHHHHhC
Confidence 478888888877332211 12347999999999988754
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-36 Score=286.24 Aligned_cols=237 Identities=20% Similarity=0.295 Sum_probs=192.8
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316 164 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 243 (445)
Q Consensus 164 ~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~ 243 (445)
....|++|+|.++++++|++. +.+|..+++.+...+..+|.++|||||||||||++|+++|.+++. +|+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~---v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~-------~fi~ 246 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKES---VELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA-------TFLR 246 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHH---HHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC-------EEEE
T ss_pred CCCcceecCcHHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC-------CEEE
Confidence 345789999999999999984 556666667666677788999999999999999999999999988 9999
Q ss_pred eecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCC---chhHHHHHHHHHhhccC----CcEEEEE
Q 013316 244 VQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIF 313 (445)
Q Consensus 244 ~~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~~~~i~ 313 (445)
++++++.++|+|++++.++.+|..| .+|||||||||.++++|..++ .......+..||..|+. ..++||+
T Consensus 247 v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIa 326 (437)
T 4b4t_I 247 IVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIM 326 (437)
T ss_dssp EESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEE
T ss_pred EEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEE
Confidence 9999999999999999999999877 469999999999999886432 23345667788888863 5688888
Q ss_pred ecCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhh
Q 013316 314 AGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 391 (445)
Q Consensus 314 a~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 391 (445)
||+.... +||+|+| |||..|+|+.|+.++|.+||+.++++. .++.+++.+.++..+.++
T Consensus 327 ATNrpd~-----LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~---------~l~~dvdl~~LA~~T~Gf----- 387 (437)
T 4b4t_I 327 ATNKIET-----LDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM---------NLSEDVNLETLVTTKDDL----- 387 (437)
T ss_dssp EESCSTT-----CCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS---------CBCSCCCHHHHHHHCCSC-----
T ss_pred eCCChhh-----cCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC---------CCCCcCCHHHHHHhCCCC-----
Confidence 8776544 3999998 999999999999999999999999875 456677777777655444
Q ss_pred hcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHh
Q 013316 392 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 442 (445)
Q Consensus 392 ~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 442 (445)
+++++++++..|...... ++...|+.+||.+|++++.+
T Consensus 388 ----SGADI~~l~~eA~~~Air---------~~~~~It~eDf~~Al~rv~~ 425 (437)
T 4b4t_I 388 ----SGADIQAMCTEAGLLALR---------ERRMQVTAEDFKQAKERVMK 425 (437)
T ss_dssp ----CHHHHHHHHHHHHHHHHH---------TTCSCBCHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHHH---------cCCCccCHHHHHHHHHHHhC
Confidence 478888888877332211 12346999999999998765
No 3
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-35 Score=283.11 Aligned_cols=235 Identities=20% Similarity=0.263 Sum_probs=190.9
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
...|++|+|.++++++|++. +.++..+++.+..++..+|.++|||||||||||++|++||.+++. +|+.+
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~---V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~-------~fi~v 274 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREV---VELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA-------TFIRV 274 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHH---THHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC-------EEEEE
T ss_pred CCCHHHhccHHHHHHHHHHH---HHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC-------CeEEE
Confidence 35688999999999999984 556677777776777889999999999999999999999999988 99999
Q ss_pred ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCc---hhHHHHHHHHHhhccC----CcEEEEEe
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDK---DYGIEALEEIMSVMDG----GKVVVIFA 314 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~---~~~~~~~~~ll~~~~~----~~~~~i~a 314 (445)
+++++.++|+|++++.++.+|..| .+|||||||+|.++++|.+++. ......+..+|..|+. ..++||+|
T Consensus 275 s~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaA 354 (467)
T 4b4t_H 275 IGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFA 354 (467)
T ss_dssp EGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEE
T ss_pred EhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 999999999999999999999877 4699999999999998865432 2334567778888874 56888888
Q ss_pred cCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316 315 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 392 (445)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 392 (445)
|+.... +||+|+| |||+.|+|+.|+.++|.+||+.++++. .+..+++.+.++..+.++
T Consensus 355 TNrpd~-----LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~---------~l~~dvdl~~LA~~T~Gf------ 414 (467)
T 4b4t_H 355 TNRPNT-----LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM---------SVERGIRWELISRLCPNS------ 414 (467)
T ss_dssp CSCTTS-----BCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTS---------CBCSSCCHHHHHHHCCSC------
T ss_pred CCCccc-----CChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCC---------CCCCCCCHHHHHHHCCCC------
Confidence 776543 3999998 999999999999999999999999875 445677777777655444
Q ss_pred cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316 393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 441 (445)
Q Consensus 393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 441 (445)
+++++++++..|...... ++...|+.+||.+|++++.
T Consensus 415 ---SGADI~~l~~eAa~~Air---------~~~~~it~~Df~~Al~kV~ 451 (467)
T 4b4t_H 415 ---TGAELRSVCTEAGMFAIR---------ARRKVATEKDFLKAVDKVI 451 (467)
T ss_dssp ---CHHHHHHHHHHHHHHHHH---------HTCSSBCHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHHH---------cCCCccCHHHHHHHHHHHh
Confidence 478888888777332211 1234699999999998764
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-35 Score=284.41 Aligned_cols=237 Identities=21% Similarity=0.268 Sum_probs=192.5
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
...|++|+|.+++++.|++. +.+|..+++.+...+..+|.++|||||||||||++|++||.+++. +|+.+
T Consensus 177 ~v~~~digGl~~~k~~l~e~---v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~-------~~~~v 246 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREV---IELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA-------NFIFS 246 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHH---HHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-------EEEEE
T ss_pred CCChhHhCChHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-------CEEEE
Confidence 45689999999999999984 566777777777777889999999999999999999999999988 99999
Q ss_pred ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCC---chhHHHHHHHHHhhccC----CcEEEEEe
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA 314 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~~~~i~a 314 (445)
+++++.++|+|+++..++.+|..| .+|||||||||.++++|.+++ .......++.||..|++ +.++||+|
T Consensus 247 ~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~A 326 (437)
T 4b4t_L 247 PASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMA 326 (437)
T ss_dssp EGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEE
T ss_pred ehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEe
Confidence 999999999999999999999877 579999999999999886433 23345677889998875 46788888
Q ss_pred cCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316 315 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 392 (445)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 392 (445)
|+.... +||+|+| |||..|+||.|+.++|.+||+.++++. .+..+++.+.++..+.++
T Consensus 327 TNrp~~-----LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~---------~~~~d~dl~~lA~~t~G~------ 386 (437)
T 4b4t_L 327 TNRPDT-----LDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV---------KKTGEFDFEAAVKMSDGF------ 386 (437)
T ss_dssp ESSTTS-----SCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS---------CBCSCCCHHHHHHTCCSC------
T ss_pred cCCchh-----hCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCC---------CCCcccCHHHHHHhCCCC------
Confidence 776543 3999987 699999999999999999999999875 345667777766554433
Q ss_pred cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHhc
Q 013316 393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL 443 (445)
Q Consensus 393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~~ 443 (445)
+++++++++..|...... ++...|+.+||.+|++++.+.
T Consensus 387 ---sGADi~~l~~eA~~~air---------~~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 387 ---NGADIRNCATEAGFFAIR---------DDRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp ---CHHHHHHHHHHHHHHHHH---------TTCSSBCHHHHHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHHHHHHHH---------cCCCCCCHHHHHHHHHHHHhc
Confidence 478888888877332211 123369999999999988763
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-35 Score=286.72 Aligned_cols=236 Identities=21% Similarity=0.274 Sum_probs=191.8
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
...|++|+|.++++++|++ .+.+|..+++.+...+..+|.++|||||||||||++|+++|.+++. +|+.+
T Consensus 177 ~~t~~digGl~~~k~~l~e---~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~-------~f~~v 246 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVE---AIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA-------TFLKL 246 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHH---HTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-------EEEEE
T ss_pred CCChHhcCcHHHHHHHHHH---HHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC-------CEEEE
Confidence 4578999999999999998 4666777777777777889999999999999999999999999988 99999
Q ss_pred ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCc---hhHHHHHHHHHhhccC----CcEEEEEe
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDK---DYGIEALEEIMSVMDG----GKVVVIFA 314 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~---~~~~~~~~~ll~~~~~----~~~~~i~a 314 (445)
+++++.++|+|++++.++.+|..| .+|||||||||.++++|.+... ......+..||..|++ .+++||+|
T Consensus 247 ~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaa 326 (434)
T 4b4t_M 247 AAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAA 326 (434)
T ss_dssp EGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEE
T ss_pred ehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEe
Confidence 999999999999999999999876 5799999999999998864332 2334567788888875 45788888
Q ss_pred cCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316 315 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 392 (445)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 392 (445)
|+.... +||+|+| |||..|+||.|+.++|.+||+.++++. .+..+++.+.++..+.++
T Consensus 327 TNrp~~-----LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~---------~~~~dvdl~~lA~~t~G~------ 386 (434)
T 4b4t_M 327 TNRVDV-----LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM---------TTDDDINWQELARSTDEF------ 386 (434)
T ss_dssp CSSCCC-----CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS---------CBCSCCCHHHHHHHCSSC------
T ss_pred CCCchh-----cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCC---------CCCCcCCHHHHHHhCCCC------
Confidence 766543 3999988 999999999999999999999999875 445677777776555444
Q ss_pred cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHh
Q 013316 393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 442 (445)
Q Consensus 393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 442 (445)
+++++++++..|...... .+...|+.+||.+|++++.|
T Consensus 387 ---sGADi~~l~~eA~~~a~r---------~~~~~i~~~Df~~Al~~v~~ 424 (434)
T 4b4t_M 387 ---NGAQLKAVTVEAGMIALR---------NGQSSVKHEDFVEGISEVQA 424 (434)
T ss_dssp ---CHHHHHHHHHHHHHHHHH---------HTCSSBCHHHHHHHHHSCSS
T ss_pred ---CHHHHHHHHHHHHHHHHH---------cCCCCcCHHHHHHHHHHHhC
Confidence 478888888877332221 12346999999999987654
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-34 Score=276.45 Aligned_cols=234 Identities=20% Similarity=0.267 Sum_probs=189.6
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
...|++++|.+++|++|++. +.++..+++.+...+..+|.++|||||||||||++|+++|.+++. +|+.+
T Consensus 168 ~v~~~digGl~~~k~~l~e~---v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~-------~~~~v 237 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREA---VELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA-------AFIRV 237 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHH---HHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC-------EEEEE
T ss_pred CCCHHHhccHHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CeEEE
Confidence 35689999999999999984 455666677766677789999999999999999999999999988 99999
Q ss_pred ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccC----CcEEEEEe
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFA 314 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~~~~i~a 314 (445)
+++++.++|+|+++..++.+|..| .+|||||||+|.++++|... +.....++++.||..|++ ..++||+|
T Consensus 238 ~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~a 317 (428)
T 4b4t_K 238 NGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMA 317 (428)
T ss_dssp EGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEE
T ss_pred ecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEe
Confidence 999999999999999999999877 46999999999999987532 233456788899998874 56888888
Q ss_pred cCchhHHHHHhhCccccc--ccccceeCC-CCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhh
Q 013316 315 GYSEPMKRVIASNEGFCR--RVTKFFHFN-DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 391 (445)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~-~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 391 (445)
|+.... +||+|+| |||..|+|| .|+.++|.+|++.++++. .+.++++.+.++..+.++
T Consensus 318 TN~~~~-----LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~---------~l~~~~dl~~lA~~t~G~----- 378 (428)
T 4b4t_K 318 TNRADT-----LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM---------SLAPEADLDSLIIRNDSL----- 378 (428)
T ss_dssp ESCSSS-----CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS---------CBCTTCCHHHHHHHTTTC-----
T ss_pred cCChhh-----cChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC---------CCCcccCHHHHHHHCCCC-----
Confidence 776543 3999998 999999997 799999999999999875 445677777777655444
Q ss_pred hcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316 392 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440 (445)
Q Consensus 392 ~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 440 (445)
+++++++++..|.-.... ++...|+.+||.+|+...
T Consensus 379 ----sgadi~~l~~eA~~~a~r---------~~~~~i~~~d~~~A~~~~ 414 (428)
T 4b4t_K 379 ----SGAVIAAIMQEAGLRAVR---------KNRYVILQSDLEEAYATQ 414 (428)
T ss_dssp ----CHHHHHHHHHHHHHHHHH---------TTCSSBCHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHHH---------CCCCCCCHHHHHHHHHHh
Confidence 477888888877332211 123479999999999764
No 7
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.97 E-value=7.4e-30 Score=242.11 Aligned_cols=260 Identities=37% Similarity=0.563 Sum_probs=206.7
Q ss_pred HHHHHHHH-hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC
Q 013316 162 DELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 240 (445)
Q Consensus 162 ~~~~~~~~-~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~ 240 (445)
.+....++ +++|++++++.|.+++.....+..+...+.... .++.++||+||||||||++|+++++.+...+.....+
T Consensus 23 ~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~ 101 (309)
T 3syl_A 23 KEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE-TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGH 101 (309)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS-CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCC
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCc
Confidence 34455566 699999999999998887777777777666543 4566899999999999999999999998877777789
Q ss_pred eEEeecccccccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCch
Q 013316 241 VTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSE 318 (445)
Q Consensus 241 ~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~ 318 (445)
++.++++.+.+.++|++...+...|..+.++||||||+|.+.+.+++ .+...++++.|+..++. ..+++|++++..
T Consensus 102 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~ 179 (309)
T 3syl_A 102 LVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENNRDDLVVILAGYAD 179 (309)
T ss_dssp EEEECGGGTCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHCTTTCEEEEEECHH
T ss_pred EEEEcHHHhhhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcCCCCEEEEEeCChH
Confidence 99999999999999999999999999999999999999999875543 33456788999999986 468889998887
Q ss_pred hHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHH-HhhhcccCc
Q 013316 319 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT-EKQRREMNG 397 (445)
Q Consensus 319 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~n~ 397 (445)
....+...+|+|++||+..+.|++|+.+++.+|++.++.+.. ..++++++..+...... ....+++|+
T Consensus 180 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~gn~ 248 (309)
T 3syl_A 180 RMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQN-----------YQMTPEAETALRAYIGLRRNQPHFANA 248 (309)
T ss_dssp HHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTT-----------CEECHHHHHHHHHHHHHHTTSSSCCHH
T ss_pred HHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHHhccCCCCCcH
Confidence 777777779999999999999999999999999999998742 24556666655433110 112458999
Q ss_pred hhhHHHHHHHHHhhhhhhcc---CCCChhhhhhccHHHHHH
Q 013316 398 GLVDPMLVNARENLDLRLSF---DCLDTDELRTITLEDLEA 435 (445)
Q Consensus 398 r~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~d~~~ 435 (445)
|+++++++++......|... .....++..+|+.+|+..
T Consensus 249 r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~~i~~~d~~~ 289 (309)
T 3syl_A 249 RSIRNALDRARLRQANRLFTASSGPLDARALSTIAEEDIRA 289 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---CEEHHHHHEECHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCHHHHhhccHHHhcc
Confidence 99999999998877776643 233456677888888865
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.97 E-value=2.2e-31 Score=276.15 Aligned_cols=246 Identities=20% Similarity=0.302 Sum_probs=200.2
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
...|++|.|.++++++|++. +.+|+.+++.+..++..+|.+||||||||||||++||++|++++. +|+.+
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~---v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~-------~~~~v 269 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEM---VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------FFFLI 269 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHH---HHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC-------EEEEE
T ss_pred CCChhhhcCHHHHHHHHHHH---HHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------eEEEE
Confidence 34688999999999999984 567788899999999999999999999999999999999999877 99999
Q ss_pred ecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----CcEEEEEecCc
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYS 317 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~i~a~~~ 317 (445)
+++++.++|+|+++..++.+|+.|. ++||||||||.|++++++.+++...+++++|+..|++ +.++||++|+.
T Consensus 270 ~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~ 349 (806)
T 3cf2_A 270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (806)
T ss_dssp EHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSS
T ss_pred EhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCC
Confidence 9999999999999999999999884 6999999999999998877777888999999999874 56888888776
Q ss_pred hhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316 318 EPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 395 (445)
Q Consensus 318 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 395 (445)
... +||+|++ ||++.|+|+.|+.++|.+|++.++++. .+..+++.+.++..+..++
T Consensus 350 ~d~-----LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~---------~~~~dvdl~~lA~~T~Gfs-------- 407 (806)
T 3cf2_A 350 PNS-----IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM---------KLADDVDLEQVANETHGHV-------- 407 (806)
T ss_dssp TTT-----SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSS---------EECTTCCHHHHHHHCCSCC--------
T ss_pred hhh-----cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCC---------CCCcccCHHHHHHhcCCCC--------
Confidence 543 3999999 999999999999999999999988765 4456777777776655544
Q ss_pred CchhhHHHHHHHHHhhhhhhc----c--CCCC--hhhhhhccHHHHHHHHHHHHhc
Q 013316 396 NGGLVDPMLVNARENLDLRLS----F--DCLD--TDELRTITLEDLEAGLKLLLRL 443 (445)
Q Consensus 396 n~r~l~~~~~~~~~~~~~~~~----~--~~~~--~~~~~~i~~~d~~~a~~~~~~~ 443 (445)
++++.+++.+|......|.. . .... ..+...|+.+||..|++.+.|.
T Consensus 408 -gaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps 462 (806)
T 3cf2_A 408 -GADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCC
T ss_pred -HHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCc
Confidence 56677777666443333221 1 1111 1235678999999999876654
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.97 E-value=2.4e-32 Score=283.32 Aligned_cols=243 Identities=17% Similarity=0.259 Sum_probs=159.4
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|++++++.|.+ .+.++..+++.+...+..++.++|||||||||||++|+++|.+++. +|+.++.
T Consensus 475 ~w~diggl~~~k~~l~e---~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~-------~f~~v~~ 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQE---LVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIKG 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTT---TTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC-------EEEECCH
T ss_pred CHHHhCCHHHHHHHHHH---HHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC-------ceEEecc
Confidence 46789999999999988 4566777788888888889999999999999999999999999887 9999999
Q ss_pred ccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccC----CcEEEEEecC
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAGY 316 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~~~~i~a~~ 316 (445)
+++.++|+|++++.++++|+.| .+|||||||||+++++|+.. ++....+++++||..|++ ..++||+||+
T Consensus 545 ~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN 624 (806)
T 3cf2_A 545 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 624 (806)
T ss_dssp HHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-C
T ss_pred chhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCC
Confidence 9999999999999999999888 46999999999999988632 344556889999999985 4577777766
Q ss_pred chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316 317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 394 (445)
Q Consensus 317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 394 (445)
.... +||+++| |||+.|+||.|+.++|.+|++.++++. .+..+++.+.++..+.+++
T Consensus 625 ~p~~-----lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~---------~~~~~~dl~~la~~t~g~S------- 683 (806)
T 3cf2_A 625 RPDI-----IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS---------PVAKDVDLEFLAKMTNGFS------- 683 (806)
T ss_dssp CSSS-----SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC-----------CCC---------------------
T ss_pred Cchh-----CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCC---------CCCCCCCHHHHHHhCCCCC-------
Confidence 5543 3999999 999999999999999999999988764 4456777788888887777
Q ss_pred cCchhhHHHHHHHHHhhhhhhcc----------------CCCChhhhhhccHHHHHHHHHHHHh
Q 013316 395 MNGGLVDPMLVNARENLDLRLSF----------------DCLDTDELRTITLEDLEAGLKLLLR 442 (445)
Q Consensus 395 ~n~r~l~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~i~~~d~~~a~~~~~~ 442 (445)
++++.+++..|......+... .....+..+.|+.+||.+|++.++|
T Consensus 684 --Gadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p 745 (806)
T 3cf2_A 684 --GADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARR 745 (806)
T ss_dssp ----CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC-----
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCC
Confidence 555666665553322211100 0011223457999999999988876
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.7e-28 Score=231.80 Aligned_cols=210 Identities=18% Similarity=0.234 Sum_probs=165.5
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHH-HHcCCCCCCCeEEee
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLL-YMVGILPTDRVTEVQ 245 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~-~~~~~~~~~~~~~~~ 245 (445)
.|++|+|++.+++.|++.+ .++..+++.+.. ...++.++||+||||||||++|+++|+.+ +. +|+.++
T Consensus 10 ~~~di~G~~~~k~~l~~~v---~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-------~~~~i~ 78 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAV---ILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNS-------TFFSIS 78 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHH---HHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC-------EEEEEE
T ss_pred CHHHhcCHHHHHHHHHHHH---HHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCC-------cEEEEE
Confidence 5788999999999999854 456666666543 24567899999999999999999999987 33 899999
Q ss_pred cccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-----CcEEEEEecCc
Q 013316 246 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYS 317 (445)
Q Consensus 246 ~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~i~a~~~ 317 (445)
++++.+.|+|+++..++.+|..+ .++||||||||.+.++++........++++.|+..|++ ..+++|++|+.
T Consensus 79 ~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~ 158 (322)
T 1xwi_A 79 SSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 158 (322)
T ss_dssp CCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred hHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence 99999999999999999988765 46899999999999988766666777888999988864 56888888765
Q ss_pred hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316 318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 397 (445)
Q Consensus 318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~ 397 (445)
... .+|++++||+..++++.|+.+++.+|++.++.+.. ..++...+..+. ..+. ..++
T Consensus 159 ~~~-----ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-----------~~l~~~~l~~la-~~t~-----G~sg 216 (322)
T 1xwi_A 159 PWV-----LDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQ-----------NSLTEADFRELG-RKTD-----GYSG 216 (322)
T ss_dssp TTT-----SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCC-----------BCCCHHHHHHHH-HTCT-----TCCH
T ss_pred ccc-----CCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCC-----------CCCCHHHHHHHH-HHcC-----CCCH
Confidence 532 38999999999999999999999999999987642 123444555333 3321 3457
Q ss_pred hhhHHHHHHHHH
Q 013316 398 GLVDPMLVNARE 409 (445)
Q Consensus 398 r~l~~~~~~~~~ 409 (445)
+++++++..|..
T Consensus 217 adl~~l~~~A~~ 228 (322)
T 1xwi_A 217 ADISIIVRDALM 228 (322)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 788888877643
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.96 E-value=1e-28 Score=235.27 Aligned_cols=209 Identities=17% Similarity=0.231 Sum_probs=160.9
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|++.+++.|.+. +.++..+++.... ...++.++||+||||||||++|+++|+.++. +|+.+++
T Consensus 16 ~~~di~G~~~~~~~l~~~---i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~-------~~~~v~~ 84 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEA---VILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANS-------TFFSVSS 84 (322)
T ss_dssp CGGGSCSCHHHHHHHHHH---THHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTC-------EEEEEEH
T ss_pred CHHHhcChHHHHHHHHHH---HHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCC-------CEEEEch
Confidence 478899999999999985 4455556665544 3456789999999999999999999999876 8999999
Q ss_pred ccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-----CcEEEEEecCch
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYSE 318 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~i~a~~~~ 318 (445)
+++.+.|+|++...++.+|..+ .++||||||||.+.++++....+...++++.|+..++. ..+++|++|+..
T Consensus 85 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~ 164 (322)
T 3eie_A 85 SDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 164 (322)
T ss_dssp HHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCG
T ss_pred HHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCCh
Confidence 9999999999999999988776 45899999999999987655556667888888888863 567888777654
Q ss_pred hHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCch
Q 013316 319 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG 398 (445)
Q Consensus 319 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r 398 (445)
.. .+|++++||+..++|+.|+.+++.+|++.++.+.. ..++.+.+..+.. .+ ...+++
T Consensus 165 ~~-----ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~-----------~~~~~~~l~~la~-~t-----~g~sg~ 222 (322)
T 3eie_A 165 WQ-----LDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP-----------CVLTKEDYRTLGA-MT-----EGYSGS 222 (322)
T ss_dssp GG-----SCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCC-----------CCCCHHHHHHHHH-TT-----TTCCHH
T ss_pred hh-----CCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCC-----------CCCCHHHHHHHHH-Hc-----CCCCHH
Confidence 32 38999999999999999999999999999987642 1334445554433 22 134678
Q ss_pred hhHHHHHHHH
Q 013316 399 LVDPMLVNAR 408 (445)
Q Consensus 399 ~l~~~~~~~~ 408 (445)
++++++..|.
T Consensus 223 di~~l~~~a~ 232 (322)
T 3eie_A 223 DIAVVVKDAL 232 (322)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 8888887663
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.96 E-value=3.5e-28 Score=234.16 Aligned_cols=245 Identities=16% Similarity=0.190 Sum_probs=178.7
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
..|++|+|++.+++.|.+. +..+..+++.+.. ...++.++||+||||||||++|+++|+.++. +|+.++
T Consensus 48 ~~~~di~G~~~~~~~l~~~---v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~-------~~~~v~ 116 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEA---VILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANS-------TFFSVS 116 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHH---THHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTC-------EEEEEE
T ss_pred CCHHHhCCHHHHHHHHHHH---HHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------CEEEee
Confidence 4678899999999999885 4445555555443 3456789999999999999999999999876 899999
Q ss_pred cccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc-----CCcEEEEEecCc
Q 013316 246 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD-----GGKVVVIFAGYS 317 (445)
Q Consensus 246 ~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~-----~~~~~~i~a~~~ 317 (445)
++++.+.|+|+++..++.+|..+ .++||||||||.+.+.++........++++.|+..|+ ...+++|++|+.
T Consensus 117 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~ 196 (355)
T 2qp9_X 117 SSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 196 (355)
T ss_dssp HHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESC
T ss_pred HHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCC
Confidence 99999999999999999998776 5799999999999988766556677788888988886 356788888766
Q ss_pred hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316 318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 397 (445)
Q Consensus 318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~ 397 (445)
.. ..+|++++||+..++|+.|+.+++.+|++.++.+.. ..++...+..+. ..+. ..++
T Consensus 197 ~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-----------~~~~~~~l~~la-~~t~-----G~sg 254 (355)
T 2qp9_X 197 PW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP-----------SVLTKEDYRTLG-AMTE-----GYSG 254 (355)
T ss_dssp GG-----GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSC-----------BCCCHHHHHHHH-HHTT-----TCCH
T ss_pred cc-----cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCC-----------CCCCHHHHHHHH-HHcC-----CCCH
Confidence 43 238999999999999999999999999999988642 123444555443 3331 2468
Q ss_pred hhhHHHHHHHHHhhhhhhccC--------------------------------CCCh--hhhhhccHHHHHHHHHHHHhc
Q 013316 398 GLVDPMLVNARENLDLRLSFD--------------------------------CLDT--DELRTITLEDLEAGLKLLLRL 443 (445)
Q Consensus 398 r~l~~~~~~~~~~~~~~~~~~--------------------------------~~~~--~~~~~i~~~d~~~a~~~~~~~ 443 (445)
+++++++.+|......+.... .... .....|+.+||.+|++.+.|.
T Consensus 255 ~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps 334 (355)
T 2qp9_X 255 SDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPT 334 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCC
Confidence 888898888755433332100 0000 113469999999999987763
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.95 E-value=9.1e-29 Score=233.22 Aligned_cols=243 Identities=17% Similarity=0.270 Sum_probs=178.3
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|++++++.|.+++.. +..+++.+...+..++.+++|+||||||||++|+++|..++. +|+.+++
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~---~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-------~~i~v~~ 82 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQY---PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIKG 82 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHH---HHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-------EEEEECH
T ss_pred CHHHhCCHHHHHHHHHHHHHH---HhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-------CEEEEEh
Confidence 477899999999999986543 333343333344567789999999999999999999998765 8999999
Q ss_pred ccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccC----CcEEEEEecC
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAGY 316 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~~~~i~a~~ 316 (445)
+++.+.|+|+++..++.+|..+. ++||||||||.+.+.++.. ......++++.|+..|++ .++++|++|+
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn 162 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 162 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEES
T ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecC
Confidence 99999999999999999998774 5899999999998765422 123334677888888863 5688888877
Q ss_pred chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316 317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 394 (445)
Q Consensus 317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 394 (445)
.... .+|++++ ||+..++|+.|+.+++.+|+++++++.. +..+++.+.++..+. .
T Consensus 163 ~~~~-----ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~---------~~~~~~~~~la~~~~---------g 219 (301)
T 3cf0_A 163 RPDI-----IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP---------VAKDVDLEFLAKMTN---------G 219 (301)
T ss_dssp CGGG-----SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC---------BCSSCCHHHHHHTCS---------S
T ss_pred Cccc-----cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC---------CCccchHHHHHHHcC---------C
Confidence 6543 3899988 9999999999999999999999998752 234566666554322 2
Q ss_pred cCchhhHHHHHHHHHhhhhhhccCC-------------C---ChhhhhhccHHHHHHHHHHHHh
Q 013316 395 MNGGLVDPMLVNARENLDLRLSFDC-------------L---DTDELRTITLEDLEAGLKLLLR 442 (445)
Q Consensus 395 ~n~r~l~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~i~~~d~~~a~~~~~~ 442 (445)
.+++++++++++|......+..... . .......|+.+||.+|++.+.|
T Consensus 220 ~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~ 283 (301)
T 3cf0_A 220 FSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARR 283 (301)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCC
Confidence 2355888988887654433221000 0 0112357999999999987644
No 14
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.95 E-value=1e-27 Score=238.69 Aligned_cols=244 Identities=20% Similarity=0.271 Sum_probs=186.6
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++|+|+++.+++|++++.. +..+++.+...+..++.++||+||||||||++|++||..++. +|+.++|
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~---~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-------~fv~vn~ 271 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVEL---PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------FFFLING 271 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHH---HHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-------EEEEEEH
T ss_pred CHHHcCCHHHHHHHHHHHHHH---HhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-------CEEEEEc
Confidence 467899999999999986543 333344433445677889999999999999999999998755 9999999
Q ss_pred ccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----CcEEEEEecCchh
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSEP 319 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~i~a~~~~~ 319 (445)
+++.+.++|+....++.+|..+. ++||||||||.+.++++....+...++++.|+..|+. ..+++|++|+...
T Consensus 272 ~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~ 351 (489)
T 3hu3_A 272 PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN 351 (489)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGG
T ss_pred hHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCcc
Confidence 99999999999999999998874 3699999999999988877778888999999999873 5688888877653
Q ss_pred HHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316 320 MKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 397 (445)
Q Consensus 320 ~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~ 397 (445)
. .+|++++ ||+..++|+.|+.+++.+|++.+++.. .+..+.+.+.+...+. ..++
T Consensus 352 ~-----Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~---------~l~~~~~l~~la~~t~---------g~s~ 408 (489)
T 3hu3_A 352 S-----IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM---------KLADDVDLEQVANETH---------GHVG 408 (489)
T ss_dssp G-----BCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTS---------CBCTTCCHHHHHHTCT---------TCCH
T ss_pred c-----cCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcC---------CCcchhhHHHHHHHcc---------CCcH
Confidence 2 3899998 999999999999999999999988764 2333444444443322 2346
Q ss_pred hhhHHHHHHHHHhhhhhhccC------CCC--hhhhhhccHHHHHHHHHHHHhc
Q 013316 398 GLVDPMLVNARENLDLRLSFD------CLD--TDELRTITLEDLEAGLKLLLRL 443 (445)
Q Consensus 398 r~l~~~~~~~~~~~~~~~~~~------~~~--~~~~~~i~~~d~~~a~~~~~~~ 443 (445)
+++.+++.+|......+.... ... ......|+.+||.+|++.+.|.
T Consensus 409 ~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps 462 (489)
T 3hu3_A 409 ADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (489)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCch
Confidence 788888887755443332111 011 1234579999999999988764
No 15
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.94 E-value=9.4e-27 Score=230.61 Aligned_cols=211 Identities=18% Similarity=0.232 Sum_probs=155.3
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHH-HHcCCCCCCCeEEe
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLL-YMVGILPTDRVTEV 244 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~-~~~~~~~~~~~~~~ 244 (445)
..|++|+|++.+++.|.+.+ ..+..+++.+.. ...++.++||+||||||||++|+++|..+ +. +|+.+
T Consensus 131 ~~~~di~G~~~~k~~l~~~v---~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~-------~~~~v 199 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAV---ILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNS-------TFFSI 199 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHH---THHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS-------EEEEE
T ss_pred CCHHHhcCHHHHHHHHHHHH---HHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCC-------CEEEE
Confidence 35788999999999998853 445455554432 23467899999999999999999999987 33 89999
Q ss_pred ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-----CcEEEEEecC
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGY 316 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~i~a~~ 316 (445)
+++++.+.|+|++...++.+|..+ .++||||||||.+.+.++........++++.|+..|++ ..++||++|+
T Consensus 200 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn 279 (444)
T 2zan_A 200 SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATN 279 (444)
T ss_dssp CCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEES
T ss_pred eHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCC
Confidence 999999999999988888888765 46999999999999888766667777899999999864 5678888876
Q ss_pred chhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccC
Q 013316 317 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 396 (445)
Q Consensus 317 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n 396 (445)
.... .+|++++||+..+.++.|+.+++.+|++.++.+.. ..++...+..+. ..+. ..+
T Consensus 280 ~~~~-----ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-----------~~l~~~~l~~la-~~t~-----G~s 337 (444)
T 2zan_A 280 IPWV-----LDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQ-----------NSLTEADFQELG-RKTD-----GYS 337 (444)
T ss_dssp CGGG-----SCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC-----------EECCHHHHHHHH-HHTT-----TCC
T ss_pred Cccc-----cCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCC-----------CCCCHHHHHHHH-HHcC-----CCC
Confidence 6532 38999999999999999999999999999987642 123344444333 3331 235
Q ss_pred chhhHHHHHHHHH
Q 013316 397 GGLVDPMLVNARE 409 (445)
Q Consensus 397 ~r~l~~~~~~~~~ 409 (445)
++++.+++..|..
T Consensus 338 gadl~~l~~~a~~ 350 (444)
T 2zan_A 338 GADISIIVRDALM 350 (444)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 7778888776643
No 16
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.94 E-value=2.2e-26 Score=227.11 Aligned_cols=231 Identities=23% Similarity=0.310 Sum_probs=175.8
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|++++++++.+++.....+.... .++...|.+++|+||||||||++|+++|..++. +|+.+++
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~----~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~-------~f~~is~ 82 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFN----RIGARMPKGILLVGPPGTGKTLLARAVAGEANV-------PFFHISG 82 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHH----TTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC-------CEEEEEG
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHh----hcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC-------CeeeCCH
Confidence 57789999999999999876554333333 344567789999999999999999999998866 9999999
Q ss_pred ccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccC----CcEEEEEecC
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAGY 316 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~~~~i~a~~ 316 (445)
+++...++|.++..++.+|..+ .++||||||||.+.++++.+ ......+.+++|+..|++ ..++||++|+
T Consensus 83 ~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn 162 (476)
T 2ce7_A 83 SDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATN 162 (476)
T ss_dssp GGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEES
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecC
Confidence 9999999998888889999877 45899999999999877632 233445778889988863 5688888877
Q ss_pred chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316 317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 394 (445)
Q Consensus 317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 394 (445)
.... .+|++++ ||+..|.|+.|+.+++.+|++.++++. .+.++++.+. ++..| +
T Consensus 163 ~~~~-----Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~---------~l~~~v~l~~----la~~t------~ 218 (476)
T 2ce7_A 163 RPDI-----LDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK---------PLAEDVNLEI----IAKRT------P 218 (476)
T ss_dssp CGGG-----SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS---------CBCTTCCHHH----HHHTC------T
T ss_pred Chhh-----hchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC---------CCcchhhHHH----HHHhc------C
Confidence 6543 3888887 999999999999999999999988764 3344544433 34445 6
Q ss_pred cCc-hhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316 395 MNG-GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 441 (445)
Q Consensus 395 ~n~-r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 441 (445)
||. +++++++.+|...... .+...|+.+|+.+++..+.
T Consensus 219 G~sgadL~~lv~~Aal~A~~---------~~~~~I~~~dl~~al~~v~ 257 (476)
T 2ce7_A 219 GFVGADLENLVNEAALLAAR---------EGRDKITMKDFEEAIDRVI 257 (476)
T ss_dssp TCCHHHHHHHHHHHHHHHHH---------TTCSSBCHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHH---------cCCCeecHHHHHHHHHHHh
Confidence 666 8999999988443221 1223689999999988653
No 17
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.94 E-value=1e-26 Score=199.98 Aligned_cols=139 Identities=28% Similarity=0.442 Sum_probs=122.5
Q ss_pred CCCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccc
Q 013316 1 MQKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79 (445)
Q Consensus 1 l~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~ 79 (445)
|++|++++..+ .|.||||+|+..++.++++.++. .+++++.++. .|+||||+|+..|+.+++++|++. |+++|
T Consensus 24 l~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~-~gad~~~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~----gadvn 97 (169)
T 4gpm_A 24 IENGADVNASDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNAKDS-DGRTPLHHAAENGHKEVVKLLISK----GADVN 97 (169)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTT
T ss_pred HHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cccchhhhcc-CCCCHHHHHHHcCCHHHHHHHHHC----cCCCC
Confidence 35789998877 69999999999999999988775 6889999987 799999999999999999999995 88999
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHH
Q 013316 80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 146 (445)
Q Consensus 80 ~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~ 146 (445)
.+|.+|+||||+|+..|+.+++++|+++|++++.+|.+|+||| ++|+..++.+++++|+++|++..
T Consensus 98 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL-~~A~~~g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 98 AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPL-DLAREHGNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHTC-----
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCcC
Confidence 9999999999999999999999999999999999999999999 78888899999999999998754
No 18
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.94 E-value=9.2e-26 Score=208.05 Aligned_cols=231 Identities=20% Similarity=0.296 Sum_probs=174.5
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|.+++++++.+.+..+. .+......+...+.+++|+||||||||++|+++|..++. +++.+++
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~-------~~~~i~~ 78 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLR----EPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-------PFFTISG 78 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHH----CGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC-------CEEEECS
T ss_pred CHHHhcCcHHHHHHHHHHHHHHh----CHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-------CEEEEeH
Confidence 47889999999999998765432 223333444566789999999999999999999998865 8999999
Q ss_pred ccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccC----CcEEEEEecC
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAGY 316 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~~~~i~a~~ 316 (445)
+++...++|.....++.+|+.+. ++++||||+|.+.+.++.. ......+.++.++..++. ..+++|++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn 158 (257)
T 1lv7_A 79 SDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATN 158 (257)
T ss_dssp CSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEES
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeC
Confidence 99999999998888889998774 4799999999999876532 223334677788877763 5678888876
Q ss_pred chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316 317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 394 (445)
Q Consensus 317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 394 (445)
.... .++++++ ||+..+.|+.|+.+++.+|++.++++. .+.++.+.. .++..| +
T Consensus 159 ~~~~-----l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~---------~l~~~~~~~----~la~~~------~ 214 (257)
T 1lv7_A 159 RPDV-----LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV---------PLAPDIDAA----IIARGT------P 214 (257)
T ss_dssp CTTT-----SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS---------CBCTTCCHH----HHHHTC------T
T ss_pred Cchh-----CCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC---------CCCccccHH----HHHHHc------C
Confidence 6532 3888888 999999999999999999999988764 233443322 344555 6
Q ss_pred c-CchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316 395 M-NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 441 (445)
Q Consensus 395 ~-n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 441 (445)
| |+|++++++++|......+ +...|+.+|+.+|++.+.
T Consensus 215 G~~~~dl~~l~~~a~~~a~~~---------~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 215 GFSGADLANLVNEAALFAARG---------NKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHh---------CCCcccHHHHHHHHHHHh
Confidence 7 9999999999984433221 224799999999998763
No 19
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.94 E-value=5.3e-27 Score=217.41 Aligned_cols=250 Identities=18% Similarity=0.248 Sum_probs=166.5
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEe
Q 013316 165 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 244 (445)
Q Consensus 165 ~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~ 244 (445)
...|++++|.++++++|.+. +..+..+++....++...+.+++|+||||||||++|++|+..++. +++.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~---i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-------~~i~i 75 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMA---ILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-------NFISV 75 (274)
T ss_dssp ------CCHHHHHHHHHHHH---HTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-------EEEEE
T ss_pred CCCHHHhCCHHHHHHHHHHH---HHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-------CEEEE
Confidence 46789999999999999874 334444444433444556778999999999999999999998654 78999
Q ss_pred ecccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC----cEEEEEecCc
Q 013316 245 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----KVVVIFAGYS 317 (445)
Q Consensus 245 ~~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~i~a~~~ 317 (445)
+++++.+.+.|+....+..+|+.+ .++++|+||+|.+.+.++........+..++++..|+++ .++++++++.
T Consensus 76 ~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~ 155 (274)
T 2x8a_A 76 KGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNR 155 (274)
T ss_dssp ETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESC
T ss_pred EcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCC
Confidence 999998888888888888899876 468999999999987654322222235667788877652 3555556555
Q ss_pred hhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316 318 EPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 395 (445)
Q Consensus 318 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 395 (445)
... .||++++ ||+..|+|+.|+.+++.+|++.+++.... ..+..+++.+.++.... + ...
T Consensus 156 p~~-----LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~------~~~~~~~~~~~la~~~~--~-----~g~ 217 (274)
T 2x8a_A 156 PDI-----IDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTK------PPLDADVNLEAIAGDLR--C-----DCY 217 (274)
T ss_dssp GGG-----SCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBT------TBBCTTCCHHHHHTCSG--G-----GSC
T ss_pred hhh-----CCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccC------CCCccccCHHHHHHhhc--c-----CCc
Confidence 443 2999998 99999999999999999999998764211 13345666666553321 0 123
Q ss_pred CchhhHHHHHHHHHhhhhhhccC--CCChhhhhhccHHHHHHHHHHHHh
Q 013316 396 NGGLVDPMLVNARENLDLRLSFD--CLDTDELRTITLEDLEAGLKLLLR 442 (445)
Q Consensus 396 n~r~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~d~~~a~~~~~~ 442 (445)
.++++.+++.+|......+.... .....+...|+.+||.+|++.++|
T Consensus 218 sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 218 TGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcC
Confidence 46777888877754333322111 111223458999999999988765
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=3.5e-26 Score=214.17 Aligned_cols=234 Identities=21% Similarity=0.295 Sum_probs=171.5
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|++.++++|.+.+.. +...++.+...+...+.++||+||||||||++|+++++.++. +++.+++
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~-------~~~~v~~ 84 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVEL---PLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA-------TFIRVVG 84 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHH---HHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-------EEEEEEG
T ss_pred CHHHhcCHHHHHHHHHHHHHH---HhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEeh
Confidence 467899999999999886543 222233222334457789999999999999999999998766 8999999
Q ss_pred ccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCch---hHHHHHHHHHhhcc----CCcEEEEEecC
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKD---YGIEALEEIMSVMD----GGKVVVIFAGY 316 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~---~~~~~~~~ll~~~~----~~~~~~i~a~~ 316 (445)
+.+.+.+.|.....+..+|..+ .++||||||+|.+.+++++.... .....+..++..++ ...+++|++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn 164 (285)
T 3h4m_A 85 SELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATN 164 (285)
T ss_dssp GGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECS
T ss_pred HHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC
Confidence 9999999998888888888765 45799999999999877654322 22344455555554 24678888876
Q ss_pred chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316 317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 394 (445)
Q Consensus 317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 394 (445)
.... .++++++ ||+..+.|+.|+.+++.+|++.++... .+..+.+.+.+..... .
T Consensus 165 ~~~~-----l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~---------~~~~~~~~~~l~~~~~---------g 221 (285)
T 3h4m_A 165 RPDI-----LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM---------NLAEDVNLEEIAKMTE---------G 221 (285)
T ss_dssp CGGG-----BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTS---------CBCTTCCHHHHHHHCT---------T
T ss_pred Cchh-----cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcC---------CCCCcCCHHHHHHHcC---------C
Confidence 5432 3888988 999999999999999999999988764 2234444555444332 2
Q ss_pred cCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHh
Q 013316 395 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 442 (445)
Q Consensus 395 ~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 442 (445)
.+++++++++..|......+ ....|+.+|+.++++.+.+
T Consensus 222 ~~~~~i~~l~~~a~~~a~~~---------~~~~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 222 CVGAELKAICTEAGMNAIRE---------LRDYVTMDDFRKAVEKIME 260 (285)
T ss_dssp CCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh---------ccCcCCHHHHHHHHHHHHh
Confidence 35788888888884443322 1236999999999987653
No 21
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.3e-25 Score=216.59 Aligned_cols=243 Identities=17% Similarity=0.266 Sum_probs=173.1
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|++.+++.|.+.+. .+..+++.+... ...+.++||+||||||||++|+++|..++. +|+.+++
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~aia~~~~~-------~~~~i~~ 150 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVV---WPMLRPDIFTGL-RGPPKGILLFGPPGTGKTLIGKCIASQSGA-------TFFSISA 150 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTH---HHHHCTTTSCGG-GSCCSEEEEESSTTSSHHHHHHHHHHHTTC-------EEEEEEG
T ss_pred CHHHhCChHHHHHHHHHHHH---HHhhChHhHhhc-cCCCceEEEECCCCCCHHHHHHHHHHHcCC-------eEEEEeh
Confidence 56789999999999988543 333344443333 356789999999999999999999998765 8999999
Q ss_pred ccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC------CcEEEEEecCc
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGYS 317 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~~~~i~a~~~ 317 (445)
+++.+.++|.....++.+|..+ .++||||||||.+.+.++.+......++++.|+..+++ .++++|++|+.
T Consensus 151 ~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~ 230 (357)
T 3d8b_A 151 SSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNR 230 (357)
T ss_dssp GGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESC
T ss_pred HHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCC
Confidence 9999999998888888888765 46999999999999877655566677888899888874 46788888766
Q ss_pred hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316 318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 397 (445)
Q Consensus 318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~ 397 (445)
.. ..++++++||+..+.++.|+.+++.+|+..++.+.. ..++.+.+..+.. .+. ...+
T Consensus 231 ~~-----~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~-----------~~l~~~~l~~la~-~t~-----G~s~ 288 (357)
T 3d8b_A 231 PQ-----EIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQ-----------CCLSEEEIEQIVQ-QSD-----AFSG 288 (357)
T ss_dssp GG-----GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSC-----------BCCCHHHHHHHHH-HTT-----TCCH
T ss_pred hh-----hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcC-----------CCccHHHHHHHHH-HcC-----CCCH
Confidence 43 238999999999999999999999999999887642 1234455554433 221 2246
Q ss_pred hhhHHHHHHHHHhhhhhhc---cCCCChhhhhhccHHHHHHHHHHHHh
Q 013316 398 GLVDPMLVNARENLDLRLS---FDCLDTDELRTITLEDLEAGLKLLLR 442 (445)
Q Consensus 398 r~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~d~~~a~~~~~~ 442 (445)
++++.++..+......... .......+...|+.+||.++++.+.|
T Consensus 289 ~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 289 ADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp HHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCC
Confidence 6777777665321111110 00111234458999999999998876
No 22
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.93 E-value=2e-26 Score=213.05 Aligned_cols=235 Identities=18% Similarity=0.288 Sum_probs=157.0
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|++.+++.+.+++..... ++.+...+...+.+++|+||||||||++|+++|+.++. +++.+++
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~----~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~-------~~~~~~~ 72 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKS----PERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV-------PFLAMAG 72 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHC----CC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-------CEEEEET
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHC----HHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CEEEech
Confidence 467899999999999987654432 23333445567889999999999999999999999876 8999999
Q ss_pred ccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCC----chhHHHHHHHHHhhccC----CcEEEEEec
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD----KDYGIEALEEIMSVMDG----GKVVVIFAG 315 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~----~~~~~~~~~~ll~~~~~----~~~~~i~a~ 315 (445)
+++.+.+.|.+...+..+|..+. ++||||||+|.+..++.... .......+..++..++. ..+++|+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~t 152 (262)
T 2qz4_A 73 AEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLAST 152 (262)
T ss_dssp TTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEE
T ss_pred HHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecC
Confidence 99988888888888888887764 79999999999987654321 11222456667766654 467788877
Q ss_pred CchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhc
Q 013316 316 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 393 (445)
Q Consensus 316 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 393 (445)
+.... .++++++ ||+..++|+.|+.+++.+|+++++.+.. + ..+.+.....+...+.
T Consensus 153 n~~~~-----ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~---------~--~~~~~~~~~~l~~~~~----- 211 (262)
T 2qz4_A 153 NRADI-----LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK---------L--TQSSTFYSQRLAELTP----- 211 (262)
T ss_dssp SCGGG-----GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT---------C--CBTHHHHHHHHHHTCT-----
T ss_pred CChhh-----cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC---------C--CcchhhHHHHHHHHCC-----
Confidence 65432 2788998 9999999999999999999999998652 1 1122222223333321
Q ss_pred ccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHHh
Q 013316 394 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 442 (445)
Q Consensus 394 ~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 442 (445)
..+++++++++.+|.... ...+...|+.+|+.++++.+.+
T Consensus 212 g~~~~~l~~l~~~a~~~a---------~~~~~~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 212 GFSGADIANICNEAALHA---------AREGHTSVHTLNFEYAVERVLA 251 (262)
T ss_dssp TCCHHHHHHHHHHHHTC-----------------CCBCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH---------HHcCCCCCCHHHHHHHHHHhcc
Confidence 234678889988873221 1123457999999999987654
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.93 E-value=1e-25 Score=220.09 Aligned_cols=243 Identities=22% Similarity=0.281 Sum_probs=164.4
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++|+|++.+++.|.+++ ..+..+++.+.... .++.++||+||||||||++|++||..++. +|+.+++
T Consensus 113 ~~~~iiG~~~~~~~l~~~~---~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~-------~~~~v~~ 181 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIV---ILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNA-------TFFNISA 181 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHT---HHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTC-------EEEEECS
T ss_pred ChHHhCCHHHHHHHHHHHH---HHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcC-------cEEEeeH
Confidence 4788999999999998854 33434444444333 45789999999999999999999998765 9999999
Q ss_pred ccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC------CcEEEEEecCc
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGYS 317 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~~~~i~a~~~ 317 (445)
+.+.+.|+|.....+..+|..+ .++||||||||.+...+.........++++.|+..+++ .++++|++|+.
T Consensus 182 ~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 261 (389)
T 3vfd_A 182 ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR 261 (389)
T ss_dssp CCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred HHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence 9999999999988888888766 44899999999998877665566677888888888873 56788888765
Q ss_pred hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316 318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 397 (445)
Q Consensus 318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~ 397 (445)
.. ..++++++||+..+.|+.|+.+++.+|++.++.+.. ..++.+.+..+. ..+. ..++
T Consensus 262 ~~-----~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-----------~~l~~~~~~~la-~~~~-----g~~~ 319 (389)
T 3vfd_A 262 PQ-----ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG-----------SPLTQKELAQLA-RMTD-----GYSG 319 (389)
T ss_dssp GG-----GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC-----------CCSCHHHHHHHH-HHTT-----TCCH
T ss_pred ch-----hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHH-HHcC-----CCCH
Confidence 43 238999999998999999999999999999887642 234445555433 3332 2345
Q ss_pred hhhHHHHHHHHHhhhhhhc---cCCCChhhhhhccHHHHHHHHHHHHh
Q 013316 398 GLVDPMLVNARENLDLRLS---FDCLDTDELRTITLEDLEAGLKLLLR 442 (445)
Q Consensus 398 r~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~d~~~a~~~~~~ 442 (445)
+++..++..+......++. .......+...|+.+||..+++.+.+
T Consensus 320 ~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 367 (389)
T 3vfd_A 320 SDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKR 367 (389)
T ss_dssp HHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCC
Confidence 6677777655222111110 00111223457999999999876543
No 24
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.93 E-value=1.4e-25 Score=211.35 Aligned_cols=243 Identities=23% Similarity=0.314 Sum_probs=169.9
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|++++++.+.+.+. .+..+++.+.... .++.+++|+||||||||++|+++|..++. +|+.+++
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~-------~~~~i~~ 87 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSA-------TFLNISA 87 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTC-------EEEEEES
T ss_pred CHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCC-------CeEEeeH
Confidence 46789999999999988543 3444444444333 45779999999999999999999998765 8999999
Q ss_pred ccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-------CcEEEEEecC
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-------GKVVVIFAGY 316 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~i~a~~ 316 (445)
+.+.+.+.|..+...+.+|..+ .++||||||+|.+...++....+.....++.|+..++. .++++|++|+
T Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn 167 (297)
T 3b9p_A 88 ASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATN 167 (297)
T ss_dssp TTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEES
T ss_pred HHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecC
Confidence 9999999998888777777655 56999999999999877654445556777778777763 3577777766
Q ss_pred chhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccC
Q 013316 317 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 396 (445)
Q Consensus 317 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n 396 (445)
... ..++++++||+..+.++.|+.+++..|++.++.+.. ..++.+.+..+. ..+. ..+
T Consensus 168 ~~~-----~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~-----------~~~~~~~~~~la-~~~~-----g~~ 225 (297)
T 3b9p_A 168 RPQ-----ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQG-----------SPLDTEALRRLA-KITD-----GYS 225 (297)
T ss_dssp CGG-----GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGS-----------CCSCHHHHHHHH-HHTT-----TCC
T ss_pred Chh-----hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHH-HHcC-----CCC
Confidence 543 238999999999999999999999999999887642 134455555443 3331 234
Q ss_pred chhhHHHHHHHHHhhhhhhcc---CCCChhhhhhccHHHHHHHHHHHHh
Q 013316 397 GGLVDPMLVNARENLDLRLSF---DCLDTDELRTITLEDLEAGLKLLLR 442 (445)
Q Consensus 397 ~r~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~d~~~a~~~~~~ 442 (445)
+++++++++.+......+... ..........|+.+||..|++.+.|
T Consensus 226 ~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 274 (297)
T 3b9p_A 226 GSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRR 274 (297)
T ss_dssp HHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCC
Confidence 567888887663221111100 0011112347999999998876543
No 25
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.92 E-value=1.4e-24 Score=210.26 Aligned_cols=255 Identities=20% Similarity=0.277 Sum_probs=174.1
Q ss_pred HHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCC--CCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCC
Q 013316 164 LENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLK--VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 240 (445)
Q Consensus 164 ~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~ 240 (445)
+...+++ ++|++.+++.+...+.... .+...+.. ....++.++||+||||||||++|++||+.++. +
T Consensus 9 l~~~l~~~i~G~~~~~~~l~~~i~~~~---~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~-------~ 78 (363)
T 3hws_A 9 IRNHLDDYVIGQEQAKKVLAVAVYNHY---KRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDV-------P 78 (363)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHH---HHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC-------C
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHH---hhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCC-------C
Confidence 3444554 7999999999988654222 22222211 12236779999999999999999999999865 9
Q ss_pred eEEeeccccccc-ccCCc-hhHHHHHHHH-------ccCcEEEEcCccccccCCCCCC--ch-hHHHHHHHHHhhccCC-
Q 013316 241 VTEVQRTDLVGE-FVGHT-GPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADD--KD-YGIEALEEIMSVMDGG- 307 (445)
Q Consensus 241 ~~~~~~~~l~~~-~~g~~-~~~~~~~~~~-------a~~~il~lDEid~l~~~~~~~~--~~-~~~~~~~~ll~~~~~~- 307 (445)
|+.++++.+... |+|++ ...++..+.. +.++||||||||.+.+.+.+.+ .+ ....+++.|++.|++.
T Consensus 79 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~ 158 (363)
T 3hws_A 79 FTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTV 158 (363)
T ss_dssp EEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC-
T ss_pred EEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCce
Confidence 999999988754 88875 5556666654 4679999999999998765432 22 2334899999999831
Q ss_pred ----------------------cEEEEEecCchhHHHHHh----------------------------------------
Q 013316 308 ----------------------KVVVIFAGYSEPMKRVIA---------------------------------------- 325 (445)
Q Consensus 308 ----------------------~~~~i~a~~~~~~~~~~~---------------------------------------- 325 (445)
++++|++++......++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~ 238 (363)
T 3hws_A 159 AAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 238 (363)
T ss_dssp ---------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHT
T ss_pred eeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcC
Confidence 123444444322221110
Q ss_pred hCcccccccccceeCCCCCHHHHHHHHHH----HHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhH
Q 013316 326 SNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVD 401 (445)
Q Consensus 326 ~~~~l~~R~~~~i~~~~~~~~~~~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~ 401 (445)
.+|+|.+||+..+.|++|+.+++.+|+.. ++.+....+...+. ...++++++.++..+.| .+++|+|+|+
T Consensus 239 ~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~--~l~~~~~a~~~L~~~~~----~~~~gaR~L~ 312 (363)
T 3hws_A 239 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGV--DLEFRDEALDAIAKKAM----ARKTGARGLR 312 (363)
T ss_dssp CCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTC--EEEECHHHHHHHHHHHH----HTTCTTTTHH
T ss_pred CCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc--eEEECHHHHHHHHHhhc----CCccCchHHH
Confidence 37999999999999999999999999987 55544433332222 33678889888876555 2488999999
Q ss_pred HHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHH
Q 013316 402 PMLVNARENLDLRLSFDCLDTDELRTITLEDLEAG 436 (445)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a 436 (445)
+++++++.....+.... +......|+.++|.+.
T Consensus 313 ~~ie~~~~~~l~~~~~~--~~~~~~~I~~~~v~~~ 345 (363)
T 3hws_A 313 SIVEAALLDTMYDLPSM--EDVEKVVIDESVIDGQ 345 (363)
T ss_dssp HHHHHHHHHHHHSTTTC--CCSEEEECHHHHTTCC
T ss_pred HHHHHHHHHHHHhcccc--cCCceeEEcHHHHhCc
Confidence 99999987765544221 1113457888877643
No 26
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.92 E-value=6.8e-25 Score=217.75 Aligned_cols=232 Identities=22% Similarity=0.303 Sum_probs=175.6
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
..|++++|+++++.++.+++..+. .+.....++...+.+++|+||||||||++|++||..+.. +|+.++
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~----~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-------~~i~i~ 96 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLK----NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITAS 96 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHH----CGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-------CEEEEE
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhh----chhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEe
Confidence 357889999999999998765432 334455566677889999999999999999999998764 899999
Q ss_pred cccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccC----CcEEEEEec
Q 013316 246 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAG 315 (445)
Q Consensus 246 ~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~~~~i~a~ 315 (445)
++++...++|.....++.+|+.+. ++|+||||||.+...++.+ ..+...+.+++|+..|+. ..+++|+++
T Consensus 97 g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAat 176 (499)
T 2dhr_A 97 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 176 (499)
T ss_dssp GGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECC
T ss_pred hhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEec
Confidence 999998888888888889998875 3899999999998876532 234445678888888875 235666666
Q ss_pred CchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhc
Q 013316 316 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 393 (445)
Q Consensus 316 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 393 (445)
+.... .||++++ ||+..|.|+.|+.+++.+|++.+++.. .+.++++.+ .+++.|
T Consensus 177 n~p~~-----LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~---------~l~~dv~l~----~lA~~t------ 232 (499)
T 2dhr_A 177 NRPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAEDVDLA----LLAKRT------ 232 (499)
T ss_dssp SCGGG-----SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS---------CCCCSSTTH----HHHTTS------
T ss_pred CChhh-----cCcccccccccceEEecCCCCHHHHHHHHHHHHhcC---------CCChHHHHH----HHHHhc------
Confidence 55433 3899988 899999999999999999999876542 334444332 344555
Q ss_pred ccCc-hhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316 394 EMNG-GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 441 (445)
Q Consensus 394 ~~n~-r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 441 (445)
+||. |+|++++.+|......+ +...|+.+|+.++++.+.
T Consensus 233 ~G~~gadL~~lv~~Aa~~A~~~---------~~~~It~~dl~~al~~v~ 272 (499)
T 2dhr_A 233 PGFVGADLENLLNEAALLAARE---------GRRKITMKDLEEAADRVM 272 (499)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTT---------CCSSCCSHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHh---------CCCccCHHHHHHHHHHHh
Confidence 7777 99999999884332211 123688899999888764
No 27
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.91 E-value=1e-23 Score=199.69 Aligned_cols=260 Identities=17% Similarity=0.239 Sum_probs=172.6
Q ss_pred HHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCCC-CCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCe
Q 013316 164 LENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLK-VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV 241 (445)
Q Consensus 164 ~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~ 241 (445)
+...+++ ++|++.+++.+...+... ..+...... .....+.+++|+||||||||++|+++++.++. ++
T Consensus 9 l~~~l~~~i~G~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~-------~~ 78 (310)
T 1ofh_A 9 IVSELDQHIIGQADAKRAVAIALRNR---WRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA-------PF 78 (310)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHHH---HHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC-------CE
T ss_pred HHHHHhhhcCChHHHHHHHHHHHHHH---HhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CE
Confidence 4445554 999999999988765431 000000000 00235679999999999999999999999865 89
Q ss_pred EEeecccccc-cccCCc-hhHHHHHHHHc--------cCcEEEEcCccccccCCCCCCchhHH-HHHHHHHhhccCC---
Q 013316 242 TEVQRTDLVG-EFVGHT-GPKTRRRIKEA--------EGGILFVDEAYRLIPMQKADDKDYGI-EALEEIMSVMDGG--- 307 (445)
Q Consensus 242 ~~~~~~~l~~-~~~g~~-~~~~~~~~~~a--------~~~il~lDEid~l~~~~~~~~~~~~~-~~~~~ll~~~~~~--- 307 (445)
+.++++.+.. .|+|.. ...+.+++..+ .++||||||+|.+.+.......+... .+++.|+..+++.
T Consensus 79 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 158 (310)
T 1ofh_A 79 IKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVS 158 (310)
T ss_dssp EEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEE
T ss_pred EEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEe
Confidence 9999998866 566653 34455555432 36899999999999876543333333 3578888888864
Q ss_pred ---------cEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHH----HHhcccccccccccccCCcc
Q 013316 308 ---------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKLHSSC 374 (445)
Q Consensus 308 ---------~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~----~l~~~~~~~~~~~~~~~~~~ 374 (445)
.+++|++++... ......+|+|++||+..+.|++|+.+++.+|+++ ++.+........+ ....+
T Consensus 159 ~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~--~~~~~ 235 (310)
T 1ofh_A 159 TKHGMVKTDHILFIASGAFQV-ARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEG--VNIAF 235 (310)
T ss_dssp ETTEEEECTTCEEEEEECCSS-SCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTT--CEEEE
T ss_pred cccccccCCcEEEEEcCCccc-CCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcC--Ceecc
Confidence 567777753210 1112348999999998899999999999999983 3322211111111 12357
Q ss_pred cHHHHHHHHHHHHHHh-hhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316 375 SMDAIAALIEKETTEK-QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 439 (445)
Q Consensus 375 ~~~~l~~~~~~~~~~~-~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 439 (445)
+++++..+....|... ....+|+|.++++++++.......... ..+....|+.+|+.++++.
T Consensus 236 ~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~---~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 236 TTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASD---MNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGG---CTTCEEEECHHHHHHHTCS
T ss_pred CHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCcc---ccCCEEEEeeHHHHHHHHh
Confidence 8889998887777321 112589999999999986654433221 1223346999999998864
No 28
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.91 E-value=4.9e-23 Score=200.29 Aligned_cols=255 Identities=18% Similarity=0.278 Sum_probs=178.0
Q ss_pred HHHHHH-hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCC-CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCe
Q 013316 164 LENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA-RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV 241 (445)
Q Consensus 164 ~~~~~~-~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~ 241 (445)
+...|+ .++|++.+|+.|... +..++++...+..+.. .++.++||+||||||||++|+++|+.++. +|
T Consensus 9 i~~~Ld~~IvGqe~ak~~l~~a---v~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~-------~~ 78 (444)
T 1g41_A 9 IVSELDQHIIGQADAKRAVAIA---LRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA-------PF 78 (444)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHH---HHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC-------CE
T ss_pred HHHHHHHHhCCHHHHHHHHHHH---HHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC-------Cc
Confidence 344555 489999999998764 3344556665544433 25679999999999999999999999876 89
Q ss_pred EEeecccccc-cccCC-chhHHHHHH------------------------------------------------------
Q 013316 242 TEVQRTDLVG-EFVGH-TGPKTRRRI------------------------------------------------------ 265 (445)
Q Consensus 242 ~~~~~~~l~~-~~~g~-~~~~~~~~~------------------------------------------------------ 265 (445)
+.++++.+.+ .|+|+ .+..++.+|
T Consensus 79 ~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ 158 (444)
T 1g41_A 79 IKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQA 158 (444)
T ss_dssp EEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC--------------------------------------
T ss_pred eeecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHH
Confidence 9999988877 48875 333332222
Q ss_pred --------------------------------------------------------------------------------
Q 013316 266 -------------------------------------------------------------------------------- 265 (445)
Q Consensus 266 -------------------------------------------------------------------------------- 265 (445)
T Consensus 159 ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~ 238 (444)
T 1g41_A 159 FRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPE 238 (444)
T ss_dssp -------------------------------------------------------------------CCGGGSCSSCCHH
T ss_pred HHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHH
Confidence
Q ss_pred -------HHc-cCcEEEEcCccccccCCCCCCchhHHH-HHHHHHhhccC------------CcEEEEEecC---chhHH
Q 013316 266 -------KEA-EGGILFVDEAYRLIPMQKADDKDYGIE-ALEEIMSVMDG------------GKVVVIFAGY---SEPMK 321 (445)
Q Consensus 266 -------~~a-~~~il~lDEid~l~~~~~~~~~~~~~~-~~~~ll~~~~~------------~~~~~i~a~~---~~~~~ 321 (445)
+.+ ..++||+||||+++.+..+...+.+.+ +|+.||+.+++ .++++|+++. .++.+
T Consensus 239 ~~~~~ai~~ae~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~d 318 (444)
T 1g41_A 239 ELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSD 318 (444)
T ss_dssp HHHHHHHHHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGG
T ss_pred HHHHHHHHHhccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhh
Confidence 223 457999999999997654444566654 77889999885 3567888872 11222
Q ss_pred HHHhhCcccccccccceeCCCCCHHHHHHHHH----HHHhcccccccccccccCCcccHHHHHHHHHHHHH--Hhhhccc
Q 013316 322 RVIASNEGFCRRVTKFFHFNDFNSEELAKILH----IKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT--EKQRREM 395 (445)
Q Consensus 322 ~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~ 395 (445)
..|+|++||+.++.|+.|+.+|+..|+. ..++++...++..+..+ .++++++.+++...+. .+.+ ..
T Consensus 319 ----lipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l--~~~~~al~~i~~~a~~~~~~t~-~~ 391 (444)
T 1g41_A 319 ----LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNI--AFTTDAVKKIAEAAFRVNEKTE-NI 391 (444)
T ss_dssp ----SCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEE--EECHHHHHHHHHHHHHHHHHSC-CC
T ss_pred ----cchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceE--EECHHHHHHHHHHHHHhccCCc-cC
Confidence 3599999999999999999999999993 23333333333333333 6788899988876543 2223 35
Q ss_pred CchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316 396 NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 438 (445)
Q Consensus 396 n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~ 438 (445)
++|.|+++++++++.....+... ......||.+++.+.++
T Consensus 392 GaR~L~~~ie~~~~~~~~~~~~~---~~~~~~i~~~~v~~~l~ 431 (444)
T 1g41_A 392 GARRLHTVMERLMDKISFSASDM---NGQTVNIDAAYVADALG 431 (444)
T ss_dssp GGGHHHHHHHHHHHHHHHHGGGC---TTCEEEECHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHhhcccc---CCCeEEEeHHHHHHhcC
Confidence 69999999999988877655322 23456899999987765
No 29
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.91 E-value=4.3e-24 Score=183.57 Aligned_cols=138 Identities=30% Similarity=0.433 Sum_probs=127.6
Q ss_pred hHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHH
Q 013316 15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK 94 (445)
Q Consensus 15 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~ 94 (445)
++|+.||..|+.++|+.||. .|+++|.++. .|+||||+|+..++.+++++|++. |++++.+|.+|.||||+|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~-~Gadvn~~d~-~g~t~l~~a~~~~~~~~~~~ll~~----gad~~~~d~~g~TpLh~A~~ 79 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIE-NGADVNASDS-DGRTPLHHAAENGHKEVVKLLISK----GADVNAKDSDGRTPLHHAAE 79 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH-CCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHhc----ccchhhhccCCCCHHHHHHH
Confidence 57999999999999998885 6899999997 799999999999999999999995 89999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316 95 NGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA 159 (445)
Q Consensus 95 ~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a 159 (445)
.|+.+++++|+++|++++.+|.+|+||| |+|+..++.+++++|+++++++..++..+.++...+
T Consensus 80 ~g~~~~v~~Ll~~gadvn~~d~~G~TpL-h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A 143 (169)
T 4gpm_A 80 NGHKEVVKLLISKGADVNAKDSDGRTPL-HHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLA 143 (169)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHHHCcCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence 9999999999999999999999999999 888889999999999999999888777766665544
No 30
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.90 E-value=4.1e-24 Score=177.01 Aligned_cols=133 Identities=20% Similarity=0.249 Sum_probs=121.9
Q ss_pred ccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccccc
Q 013316 4 NQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN 82 (445)
Q Consensus 4 ~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d 82 (445)
+++.+..+ .|.||||+|+..|+.++++.|+. .+.+++..+. .|+||||+|+. |+.+++++|+++ |++++.+|
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~-~~~~~v~~Ll~~----g~~~~~~~ 74 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLE-AGADPNALNR-FGRRPIQVMMM-GSAQVAELLLLH----GAEPNCAD 74 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TCCTTTTTSTT-SCHHHHHHHHHH----TCCSSCCB
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHH-cCCCcCCcCC-CCCCHHHHHHc-CCHHHHHHHHHC----CCCCCCcC
Confidence 45566655 69999999999999999998886 5789999987 79999999999 999999999995 88999999
Q ss_pred CC-CCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316 83 MY-GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144 (445)
Q Consensus 83 ~~-g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~ 144 (445)
.. |.||||+|+..|+.+++++|+++|++++.+|..|+||| ++|...++.+++++|+++|++
T Consensus 75 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl-~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPV-DLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp TTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHH-HHHHHHTCHHHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH-HHHHHcCCHHHHHHHHHcCCC
Confidence 99 99999999999999999999999999999999999999 778888999999999988864
No 31
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.90 E-value=2.8e-26 Score=212.84 Aligned_cols=231 Identities=19% Similarity=0.313 Sum_probs=162.0
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|++++++.+.+++..+..+...... +...+.+++|+||||||||++|+++|..+.. +|+.+++
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~vll~G~~GtGKT~la~~la~~~~~-------~~~~v~~ 77 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANL----GAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV-------PFFSMGG 77 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHH----SCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC-------CCCCCCS
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHC----CCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------CEEEech
Confidence 4677999999999999987765544433333 3355678999999999999999999999876 7888999
Q ss_pred ccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCC----chhHHHHHHHHHhhccC-----CcEEEEEe
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD----KDYGIEALEEIMSVMDG-----GKVVVIFA 314 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~----~~~~~~~~~~ll~~~~~-----~~~~~i~a 314 (445)
+.+...+.|.+...++.+|+.+. ++||||||+|.+.++++.++ .....+.++.|+..+++ ..+++|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~t 157 (268)
T 2r62_A 78 SSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAA 157 (268)
T ss_dssp CTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEEC
T ss_pred HHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEe
Confidence 99988888887766666776653 49999999999987653211 11112356677777764 34777777
Q ss_pred cCchhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhh
Q 013316 315 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 392 (445)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 392 (445)
++.... .++++++ ||+..+.|+.|+.+++.++++.+++... +..+.+.+.+....
T Consensus 158 tn~~~~-----ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~---------~~~~~~~~~la~~~--------- 214 (268)
T 2r62_A 158 TNRPEI-----LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVK---------LANDVNLQEVAKLT--------- 214 (268)
T ss_dssp BSCCTT-----SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSC---------CCSSCCTTTTTSSS---------
T ss_pred cCCchh-----cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCC---------CCCccCHHHHHHHc---------
Confidence 765532 3788888 9999999999999999999999887642 22333333333221
Q ss_pred cccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316 393 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440 (445)
Q Consensus 393 ~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 440 (445)
...+++++++++++|...... .+...|+.+|+.++++.+
T Consensus 215 ~g~~g~dl~~l~~~a~~~a~~---------~~~~~i~~~~~~~a~~~~ 253 (268)
T 2r62_A 215 AGLAGADLANIINEAALLAGR---------NNQKEVRQQHLKEAVERG 253 (268)
T ss_dssp CSSCHHHHHHHHHHHHHTTSS---------SCCCSCCHHHHHTSCTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHH---------hccCCcCHHHHHHHHHHH
Confidence 123468999999988432211 112368999998877654
No 32
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.90 E-value=2.1e-23 Score=210.48 Aligned_cols=129 Identities=21% Similarity=0.233 Sum_probs=115.1
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCcCCC------CCCCCChHHHHHHh---CCcHHHHHHhhcCCCCCCcccccccC
Q 013316 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNER------NPVMAQTPLHVSAG---YNKAEIVKSLLEWPGNDKVELEAQNM 83 (445)
Q Consensus 13 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~------~~~~g~tpLh~A~~---~g~~~iv~~Ll~~~~~~g~~v~~~d~ 83 (445)
..+.||.|+..|+.+.++.||. .|.++|.. +. .|+||||+||. .|+.+++++|+++ |+++|.+|.
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~-~g~~~n~~~~~~~~~~-~g~t~Lh~A~~~a~~g~~~~v~~Ll~~----ga~vn~~d~ 205 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFA-NGQDFGQPLPGPDAQA-PEELVLHLAVKVANQASLPLVDFIIQN----GGHLDAKAA 205 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHH-TTCCSSSCBCCSSSCC-SCBCHHHHHHHTCCTTTHHHHHHHHHH----SCCTTCCCS
T ss_pred cHHHHHHHHhccCHHHHHHHHh-hcccccCCCCCccccc-ccchHHHHHHHhcccccHHHHHHHHHc----CCCCCccCC
Confidence 4578999999999999998886 57888876 65 79999999965 8999999999995 899999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhh
Q 013316 84 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 148 (445)
Q Consensus 84 ~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~ 148 (445)
.|+||||+|+..|+.+++++|+++||+++.+|.+|+||| ++|...++.+++++|+.+|++....
T Consensus 206 ~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl-~~A~~~~~~~~~~~Ll~~ga~~~~~ 269 (497)
T 3lvq_E 206 DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETAL-DIARKKHHKECEELLEQAQAGTFAF 269 (497)
T ss_dssp SSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHH-HHHHHTTCHHHHHHHHHTCC-----
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999999999999999999999 7888899999999999999987664
No 33
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.90 E-value=6.2e-24 Score=197.01 Aligned_cols=152 Identities=27% Similarity=0.316 Sum_probs=137.3
Q ss_pred CCCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccc
Q 013316 1 MQKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79 (445)
Q Consensus 1 l~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~ 79 (445)
++.|++++..+ .|+||||+||..|+.++++.|+. .+++++..+. .|.||+|+|+..++.+++++|++. |+++|
T Consensus 73 l~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~~a~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~----g~~~n 146 (269)
T 4b93_B 73 PASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLK-HGANAGARNA-DQAVPLHLACQQGHFQVVKCLLDS----NAKPN 146 (269)
T ss_dssp --CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHH-TTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHT----TCCSC
T ss_pred HHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh-cCCCcCccCC-CCCCccccccccChHHHHHHHHHC----CCCCC
Confidence 35789998877 69999999999999999998875 6788999887 799999999999999999999995 88999
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316 80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA 159 (445)
Q Consensus 80 ~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a 159 (445)
.+|..|.||||+|+..|+.+++++|+++|++++.++..|+||| |+|+..++.+++++|+++|+++..++..+.++...+
T Consensus 147 ~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~L-h~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A 225 (269)
T 4b93_B 147 KKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTAL-HEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA 225 (269)
T ss_dssp CCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHH-HHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGS
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHH-HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999 888889999999999999999888777666666544
No 34
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.90 E-value=7.7e-23 Score=193.89 Aligned_cols=220 Identities=19% Similarity=0.289 Sum_probs=158.9
Q ss_pred HHHHHH-hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeE
Q 013316 164 LENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 242 (445)
Q Consensus 164 ~~~~~~-~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~ 242 (445)
+...+. .++|++.+++.+...+.... .+......+..+++|+||||||||++|+++|+.+... ..+++
T Consensus 11 l~~~l~~~i~G~~~~~~~l~~~i~~~~-------~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~----~~~~~ 79 (311)
T 4fcw_A 11 LEEELHKRVVGQDEAIRAVADAIRRAR-------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT----EEAMI 79 (311)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHHHH-------HTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC----GGGEE
T ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHh-------cCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC----CcceE
Confidence 334444 48899999998888665431 1222222334579999999999999999999998652 23788
Q ss_pred Eeecccccc-----cccC-------Cc-hhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC--
Q 013316 243 EVQRTDLVG-----EFVG-------HT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-- 307 (445)
Q Consensus 243 ~~~~~~l~~-----~~~g-------~~-~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-- 307 (445)
.++++.+.. .++| .. ...+...+..+.++||||||+|.+.+ ++++.|++.++++
T Consensus 80 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~le~~~~ 148 (311)
T 4fcw_A 80 RIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP-----------DVFNILLQMLDDGRL 148 (311)
T ss_dssp EEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEE
T ss_pred EeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH-----------HHHHHHHHHHhcCEE
Confidence 899887533 2333 22 24566777788889999999999876 7888898888753
Q ss_pred -----------cEEEEEecCch---------------hHHH------HHhhCcccccccccceeCCCCCHHHHHHHHHHH
Q 013316 308 -----------KVVVIFAGYSE---------------PMKR------VIASNEGFCRRVTKFFHFNDFNSEELAKILHIK 355 (445)
Q Consensus 308 -----------~~~~i~a~~~~---------------~~~~------~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 355 (445)
+.++|++++.. .... .-..+|+|.+||+..+.|++|+.+++.+|++++
T Consensus 149 ~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~ 228 (311)
T 4fcw_A 149 TDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQ 228 (311)
T ss_dssp ECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred EcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHH
Confidence 45577777762 1111 113479999999999999999999999999999
Q ss_pred HhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhh
Q 013316 356 MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 411 (445)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~ 411 (445)
+.+....+...+ ....++++++..+..+.| ..++|+|++++++++++...
T Consensus 229 l~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~----~~~gn~R~L~~~i~~~~~~~ 278 (311)
T 4fcw_A 229 MSYLRARLAEKR--ISLELTEAAKDFLAERGY----DPVFGARPLRRVIQRELETP 278 (311)
T ss_dssp THHHHHHHHTTT--CEEEECHHHHHHHHHHSC----BTTTBTTTHHHHHHHHTHHH
T ss_pred HHHHHHHHHhCC--cEEEeCHHHHHHHHHhCC----CccCCchhHHHHHHHHHHHH
Confidence 988655443222 234678889887776665 23799999999999986643
No 35
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=1.5e-23 Score=173.78 Aligned_cols=131 Identities=27% Similarity=0.310 Sum_probs=114.5
Q ss_pred ccCccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccC
Q 013316 4 NQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM 83 (445)
Q Consensus 4 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~ 83 (445)
|+++.....|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++ |++++.+|.
T Consensus 1 G~d~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~ 74 (137)
T 3c5r_A 1 GIDPFTNHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDH-AGWTPLHEACNHGHLKVVELLLQH----KALVNTTGY 74 (137)
T ss_dssp ---CCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCG
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCcccCcCC
Confidence 6788777789999999999999999998885 5889999987 799999999999999999999995 889999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhh
Q 013316 84 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141 (445)
Q Consensus 84 ~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~ 141 (445)
.|.||||+|+..|+.+++++|+++|++++.+|..|.||+ ++|...+..+++.++...
T Consensus 75 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl-~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 75 QNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV-DYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp GGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGG-GGCCCHHHHHHHSCC---
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHhhccHHHHHhhcccc
Confidence 999999999999999999999999999999999999999 777776666666655433
No 36
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.89 E-value=1.7e-24 Score=210.66 Aligned_cols=282 Identities=17% Similarity=0.140 Sum_probs=193.9
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHHhHHHHHH
Q 013316 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELEN 166 (445)
Q Consensus 87 tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~ 166 (445)
+|+.+.+.++..+.+...++.|++ +|+.++....++...+.........+.... .. ..+...
T Consensus 73 ~pvIvlT~~~~~~~~~~a~~~Ga~------------dyl~KP~~~~~L~~~i~~~l~~~~l~~~~~---~l---~~~~~~ 134 (387)
T 1ny5_A 73 TEVIVITGHGTIKTAVEAMKMGAY------------DFLTKPCMLEEIELTINKAIEHRKLRKENE---LL---RREKDL 134 (387)
T ss_dssp SEEEEEEETTCHHHHHHHHTTTCC------------EEEEESCCHHHHHHHHHHHHHHHHHHHHHH---HH---HHHHHT
T ss_pred CcEEEEeCCCCHHHHHHHHhcCce------------EEecCCCCHHHHHHHHHHHHHHHHHHHHHH---Hh---hhhhhh
Confidence 344444445666777777888988 788888777776666543322111111000 00 000011
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.+..++|.++.++++.+.+..+ +....+++++|++||||+++|+++|..+.+ ...+|+.++|
T Consensus 135 ~~~~~ig~s~~m~~l~~~i~~~--------------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r----~~~~fv~v~~ 196 (387)
T 1ny5_A 135 KEEEYVFESPKMKEILEKIKKI--------------SCAECPVLITGESGVGKEVVARLIHKLSDR----SKEPFVALNV 196 (387)
T ss_dssp TCCCCCCCSHHHHHHHHHHHHH--------------TTCCSCEEEECSTTSSHHHHHHHHHHHSTT----TTSCEEEEET
T ss_pred cchhhhhccHHhhHHHHHHHHh--------------cCCCCCeEEecCCCcCHHHHHHHHHHhcCC----CCCCeEEEec
Confidence 1345899998888888766654 345678999999999999999999998765 3449999999
Q ss_pred ccc-----cccccCCchh-------HHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-------
Q 013316 247 TDL-----VGEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------- 307 (445)
Q Consensus 247 ~~l-----~~~~~g~~~~-------~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------- 307 (445)
+.+ .+.+||+... .....|+.|.+|+||||||+.+.. +.|..|++.++++
T Consensus 197 ~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~-----------~~q~~Ll~~l~~~~~~~~g~ 265 (387)
T 1ny5_A 197 ASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSL-----------EAQAKLLRVIESGKFYRLGG 265 (387)
T ss_dssp TTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCH-----------HHHHHHHHHHHHSEECCBTC
T ss_pred CCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCH-----------HHHHHHHHHHhcCcEEeCCC
Confidence 985 3456675321 123578999999999999988876 8889999988753
Q ss_pred ------cEEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccH
Q 013316 308 ------KVVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSM 376 (445)
Q Consensus 308 ------~~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 376 (445)
++.+|++|+.+....+. ...+.|..|+. ..|.+|++. .+|+..++++++++...+.+.. ...+++
T Consensus 266 ~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~----~~~~~~ 341 (387)
T 1ny5_A 266 RKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKE----VEGFTK 341 (387)
T ss_dssp CSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCC----CCEECH
T ss_pred CceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCC----CCCCCH
Confidence 45788888876654332 12355666774 557888887 5999999999998875544321 245788
Q ss_pred HHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHH
Q 013316 377 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 437 (445)
Q Consensus 377 ~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~ 437 (445)
+++..+..+.| |||.|+|+++++++.... + ...|+.+|+...+
T Consensus 342 ~a~~~l~~~~w------pGNvreL~~~i~~~~~~~---------~---~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 342 SAQELLLSYPW------YGNVRELKNVIERAVLFS---------E---GKFIDRGELSCLV 384 (387)
T ss_dssp HHHHHHHHSCC------TTHHHHHHHHHHHHHHHC---------C---SSEECHHHHHHHC
T ss_pred HHHHHHHhCCC------CcHHHHHHHHHHHHHHhC---------C---CCcCcHHHCcHhh
Confidence 89998888877 999999999999984321 0 0257888876544
No 37
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.89 E-value=5.8e-23 Score=177.10 Aligned_cols=132 Identities=21% Similarity=0.238 Sum_probs=99.1
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~ 91 (445)
.|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++ |++++.+|..|.||||+
T Consensus 35 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~ 108 (172)
T 3v30_A 35 RGFTPLIWASAFGEIETVRFLLE-WGADPHILAK-ERESALSLASTGGYTDIVGLLLER----DVDINIYDWNGGTPLLY 108 (172)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHTT----TCCTTCCCTTSCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH-cCCCchhhcc-cCCCHHHHHHHCCCHHHHHHHHHc----CCCCCCCCCCCCCHHHH
Confidence 57788888888888877777764 4677777775 677888888888888888888774 67777777778888888
Q ss_pred HHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhh
Q 013316 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRA 150 (445)
Q Consensus 92 A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~ 150 (445)
|+..|+.+++++|+++|++++.+|..|.||| ++|...++.+++++|++++++...++.
T Consensus 109 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~~~~~~~~~~~L~~~~~~~~~~~~ 166 (172)
T 3v30_A 109 AVRGNHVKCVEALLARGADLTTEADSGYTPM-DLAVALGYRKVQQVIENHILKLFQSNL 166 (172)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHHHHHHSCC--
T ss_pred HHHcCCHHHHHHHHHcCCCccccCCCCCCHH-HHHHHhCcHHHHHHHHHHHHHHhcccC
Confidence 8888888888888888888887777888887 667777777888888777776555443
No 38
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.89 E-value=3.1e-22 Score=192.02 Aligned_cols=206 Identities=20% Similarity=0.271 Sum_probs=155.7
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|++.+++.+..++..... ...++.++||+||||||||++|+++++.++. +|+.+++
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~-----------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~-------~~~~~~~ 88 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKK-----------RNECLDHILFSGPAGLGKTTLANIISYEMSA-------NIKTTAA 88 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHH-----------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTC-------CEEEEEG
T ss_pred CHHHhCChHHHHHHHHHHHHHHHh-----------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-------CeEEecc
Confidence 467899999999999987765421 1346678999999999999999999998765 8999998
Q ss_pred ccccccccCCchhHHHHHHHH-ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc-----------------
Q 013316 247 TDLVGEFVGHTGPKTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK----------------- 308 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~-a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------- 308 (445)
+.+. ....+...+.. +.+++|||||||.+.+ ..++.|+..++++.
T Consensus 89 ~~~~------~~~~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3pfi_A 89 PMIE------KSGDLAAILTNLSEGDILFIDEIHRLSP-----------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKID 151 (338)
T ss_dssp GGCC------SHHHHHHHHHTCCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCC---------CCCCCCC
T ss_pred hhcc------chhHHHHHHHhccCCCEEEEechhhcCH-----------HHHHHHHHHHHhccchhhcccCccccceecC
Confidence 7653 33445555654 5789999999998875 67788888887643
Q ss_pred ---EEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHH
Q 013316 309 ---VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 385 (445)
Q Consensus 309 ---~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 385 (445)
+++|++|+.... .+|+|++||+..+.|++|+.+++..+++.++.+.. ..++++++..+..
T Consensus 152 ~~~~~~i~atn~~~~-----l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-----------~~~~~~~~~~l~~- 214 (338)
T 3pfi_A 152 LPKFTLIGATTRAGM-----LSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-----------KTCEEKAALEIAK- 214 (338)
T ss_dssp CCCCEEEEEESCGGG-----SCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-----------CEECHHHHHHHHH-
T ss_pred CCCeEEEEeCCCccc-----cCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHH-
Confidence 678888777544 38999999999999999999999999998887642 2456667765554
Q ss_pred HHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316 386 ETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 439 (445)
Q Consensus 386 ~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 439 (445)
.| +||.|++.++++++....... +...|+.+++..++..
T Consensus 215 ~~------~G~~r~l~~~l~~~~~~a~~~---------~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 215 RS------RSTPRIALRLLKRVRDFADVN---------DEEIITEKRANEALNS 253 (338)
T ss_dssp TT------TTCHHHHHHHHHHHHHHHHHT---------TCSEECHHHHHHHHHH
T ss_pred HH------CcCHHHHHHHHHHHHHHHHhh---------cCCccCHHHHHHHHHH
Confidence 66 889999999999884433211 1124667777666654
No 39
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.89 E-value=1.7e-22 Score=185.78 Aligned_cols=227 Identities=24% Similarity=0.336 Sum_probs=160.9
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|+++++.++.++......+......+ ...+.+++|+||||||||+++++++..+.. +++.+++
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~----~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~-------~~i~~~~ 82 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMG----ARIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITASG 82 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTT----CCCCSEEEEECCTTSSHHHHHHHHHHHTTC-------CEEEEEH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcC----CCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------CEEEeeH
Confidence 56789999999999988766543333333333 345667999999999999999999998753 8899999
Q ss_pred ccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccC---Cc-EEEEEecC
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG---GK-VVVIFAGY 316 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~---~~-~~~i~a~~ 316 (445)
.++...+.|.....+..+|+.+. ++++|+||+|.+...++.. ......+.++.++..+++ .+ ++++++++
T Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~ 162 (254)
T 1ixz_A 83 SDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATN 162 (254)
T ss_dssp HHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEES
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccC
Confidence 88887788877777888888764 4899999999998765421 233445667788887765 23 44445544
Q ss_pred chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316 317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 394 (445)
Q Consensus 317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 394 (445)
.... .||++++ ||+..+.|+.|+.+++.+|++.+++.. .+.++++.+ .++..| +
T Consensus 163 ~p~~-----ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~---------~~~~~~~~~----~la~~~------~ 218 (254)
T 1ixz_A 163 RPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAEDVDLA----LLAKRT------P 218 (254)
T ss_dssp CGGG-----SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS---------CBCTTCCHH----HHHHTC------T
T ss_pred Cchh-----CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC---------CCCcccCHH----HHHHHc------C
Confidence 4333 3899988 899999999999999999999877543 334444433 344444 4
Q ss_pred cC-chhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHH
Q 013316 395 MN-GGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 437 (445)
Q Consensus 395 ~n-~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~ 437 (445)
|+ ++++++++++|......+ +...|+.+|+++++
T Consensus 219 G~~~~dl~~~~~~a~~~a~~~---------~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 219 GFVGADLENLLNEAALLAARE---------GRRKITMKDLEEAA 253 (254)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHh---------cCCCcCHHHHHHHh
Confidence 54 489999999885433221 12369999999875
No 40
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.89 E-value=3.2e-25 Score=213.95 Aligned_cols=313 Identities=15% Similarity=0.190 Sum_probs=207.5
Q ss_pred HHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccc--ccccCCCCcHHHHHHHcCCHHHHHHHH
Q 013316 28 AFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL--EAQNMYGETPLHMAAKNGCNEAAKLLL 105 (445)
Q Consensus 28 ~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v--~~~d~~g~tpLh~A~~~g~~~~~~~Ll 105 (445)
.++.+|...+..+.... +|..++...... .++++-+.+.+|+.+|.++ .++.....+|+.+.+.++..+.+...+
T Consensus 15 ~l~~~L~~~g~~v~~a~--~~~eal~~l~~~-~~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~lT~~~~~~~~~~a~ 91 (368)
T 3dzd_A 15 SLSAILEEEGYHPDTAK--TLREAEKKIKEL-FFPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVITGHGSVDTAVKAI 91 (368)
T ss_dssp HHHHHHHHTTCEEEEES--SHHHHHHHHHHB-CCSEEEEESEETTEETTTHHHHHHHHCTTCEEEEEECSSCCHHHHHHH
T ss_pred HHHHHHHHcCCEEEEEC--CHHHHHHHHHhC-CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHH
Confidence 45556666676665544 366666554332 3443333333333223222 111111223333333344556677777
Q ss_pred hcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHHhHHHHHHHHHhhhcchHHHHHHHHHH
Q 013316 106 AHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWA 185 (445)
Q Consensus 106 ~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~g~~~~~~~l~~~~ 185 (445)
+.|++ +|+.++....++...+............. .. -..++|.++.+.++.+.+
T Consensus 92 ~~Ga~------------~yl~KP~~~~~L~~~i~~~l~~~~~~~~~------~~--------~~~~ig~s~~~~~~~~~~ 145 (368)
T 3dzd_A 92 KKGAY------------EFLEKPFSVERFLLTIKHAFEEYSKKAPP------QE--------EIEFVGEHPKILEIKRLI 145 (368)
T ss_dssp HHTCC------------EEEESSCCHHHHHHHHHHHHHHHSCCCCC------CC--------CCCCCCCSHHHHHHHHHH
T ss_pred hcCcc------------eEEeCCCCHHHHHHHHHHHHHHhhhhhcc------cc--------cccccccchHHHHHHhhh
Confidence 88888 78888887777766664332211111000 00 024889998888888766
Q ss_pred HHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc-----ccccCCchhH
Q 013316 186 KGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV-----GEFVGHTGPK 260 (445)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~-----~~~~g~~~~~ 260 (445)
..+ +....+++++|++||||+++|+++|..+.+. ..|+.++|+.+. +.+||+....
T Consensus 146 ~~~--------------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~-----~~fv~vnc~~~~~~~~~~~lfg~~~g~ 206 (368)
T 3dzd_A 146 PKI--------------AKSKAPVLITGESGTGKEIVARLIHRYSGRK-----GAFVDLNCASIPQELAESELFGHEKGA 206 (368)
T ss_dssp HHH--------------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCC-----SCEEEEESSSSCTTTHHHHHHEECSCS
T ss_pred hhh--------------hccchhheEEeCCCchHHHHHHHHHHhcccc-----CCcEEEEcccCChHHHHHHhcCccccc
Confidence 544 2356689999999999999999999988652 249999999743 4456653221
Q ss_pred -------HHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-------------cEEEEEecCchhH
Q 013316 261 -------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------------KVVVIFAGYSEPM 320 (445)
Q Consensus 261 -------~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------------~~~~i~a~~~~~~ 320 (445)
....|+.|.+|+||||||+.+.+ ..|..|++.++++ ++.+|++|+.+..
T Consensus 207 ~tga~~~~~g~~~~a~~gtlfldei~~l~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~ 275 (368)
T 3dzd_A 207 FTGALTRKKGKLELADQGTLFLDEVGELDQ-----------RVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLE 275 (368)
T ss_dssp SSSCCCCEECHHHHTTTSEEEEETGGGSCH-----------HHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHH
T ss_pred cCCcccccCChHhhcCCCeEEecChhhCCH-----------HHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHH
Confidence 23478899999999999988876 8889999999864 3568888887766
Q ss_pred HHHHh--hCcccccccc-cceeCCCCCH--HHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316 321 KRVIA--SNEGFCRRVT-KFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 395 (445)
Q Consensus 321 ~~~~~--~~~~l~~R~~-~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 395 (445)
..+.. -.+.|..|+. ..|.+|++.. +|+..++++++.+.....+.. ...++++++..+..+.| ||
T Consensus 276 ~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~----~~~~~~~a~~~L~~~~w------pG 345 (368)
T 3dzd_A 276 EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKN----CFELSEETKEYLMKQEW------KG 345 (368)
T ss_dssp HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCC----CCCBCHHHHHHHHTCCC------TT
T ss_pred HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCC----CCCcCHHHHHHHHhCCC------Cc
Confidence 54432 2356777885 4588999986 899999999999876554422 35688899998888888 99
Q ss_pred CchhhHHHHHHHHH
Q 013316 396 NGGLVDPMLVNARE 409 (445)
Q Consensus 396 n~r~l~~~~~~~~~ 409 (445)
|.|+|+++++++..
T Consensus 346 NvreL~n~i~~~~~ 359 (368)
T 3dzd_A 346 NVRELKNLIERAVI 359 (368)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999843
No 41
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.89 E-value=1.6e-23 Score=197.16 Aligned_cols=202 Identities=19% Similarity=0.210 Sum_probs=153.7
Q ss_pred hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316 170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 249 (445)
Q Consensus 170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l 249 (445)
+++|.++.++.+.+.+..+ +..+.+|||+||||||||++|++||..+.+. ..+|+.++|+.+
T Consensus 3 ~iig~s~~~~~~~~~~~~~--------------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~----~~~~v~v~~~~~ 64 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV--------------APSDATVLIHGDSGTGKELVARALHACSARS----DRPLVTLNCAAL 64 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH--------------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCS----SSCCCEEECSSC
T ss_pred CcEECCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCchHHHHHHHHHHhCccc----CCCeEEEeCCCC
Confidence 4899999999988877655 3467799999999999999999999987542 338999999875
Q ss_pred c-----ccccCCchh-------HHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc---------
Q 013316 250 V-----GEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--------- 308 (445)
Q Consensus 250 ~-----~~~~g~~~~-------~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~--------- 308 (445)
. +.++|+... .....|+.+.+++||||||+.+.. ..+..|+..++.+.
T Consensus 65 ~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~ 133 (304)
T 1ojl_A 65 NESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP-----------LMQVRLLRAIQEREVQRVGSNQT 133 (304)
T ss_dssp CHHHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCH-----------HHHHHHHHHHHSSBCCBTTBCCC
T ss_pred ChHHHHHHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCH-----------HHHHHHHHHHhcCEeeecCCccc
Confidence 3 345665221 223467888899999999998876 67888888887643
Q ss_pred ----EEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCC--HHHHHHHHHHHHhcccccccccccccCCcccHHHH
Q 013316 309 ----VVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 379 (445)
Q Consensus 309 ----~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 379 (445)
+.+|++|+.+....+. ..++.|.+||. ..|.+|+++ .+|+..++++++.+.....+. ....++++++
T Consensus 134 ~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~----~~~~~s~~a~ 209 (304)
T 1ojl_A 134 ISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRK----VVKGFTPQAM 209 (304)
T ss_dssp CBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTC----CCCCBCHHHH
T ss_pred ccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhcc----CccCCCHHHH
Confidence 7888888876444332 23577888985 557899998 789999999999876543331 1346788898
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNAREN 410 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~ 410 (445)
..+..+.| |||.|+++++++++...
T Consensus 210 ~~L~~~~w------pGnvReL~~~l~~~~~~ 234 (304)
T 1ojl_A 210 DLLIHYDW------PGNIRELENAIERAVVL 234 (304)
T ss_dssp HHHHHCCC------SSHHHHHHHHHHHHHHH
T ss_pred HHHHcCCC------CCCHHHHHHHHHHHHHh
Confidence 88877766 99999999999998653
No 42
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.89 E-value=2.1e-22 Score=195.94 Aligned_cols=255 Identities=16% Similarity=0.235 Sum_probs=160.2
Q ss_pred HHHHHHHh-hhcchHHHHHHHHHHHHhhhHHHHHHcCC-----------------CCCCCCCCeeEeecCCCCchhHHHH
Q 013316 163 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGL-----------------KVGARRPPHMAFLGNPGTGKTMVAR 224 (445)
Q Consensus 163 ~~~~~~~~-l~g~~~~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~vll~Gp~GtGKt~~A~ 224 (445)
++...|++ ++|++.+++.|...+.... .+...+. .....++.+++|+||||||||++|+
T Consensus 14 ~l~~~L~~~viGq~~ak~~l~~~~~~~~---~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 14 ELKAVLDNYVIGQEQAKKVFSVAVYNHY---KRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHHHHHHH---HHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHH
T ss_pred HHHHHHhhHccCcHHHHHHHHHHHHHHH---HHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHH
Confidence 34555665 8999999999987552110 1111000 0012356789999999999999999
Q ss_pred HHHHHHHHcCCCCCCCeEEeeccccc-ccccCCc-hhHHHHHHH-------HccCcEEEEcCccccccCCCCCC---chh
Q 013316 225 ILGRLLYMVGILPTDRVTEVQRTDLV-GEFVGHT-GPKTRRRIK-------EAEGGILFVDEAYRLIPMQKADD---KDY 292 (445)
Q Consensus 225 ~la~~~~~~~~~~~~~~~~~~~~~l~-~~~~g~~-~~~~~~~~~-------~a~~~il~lDEid~l~~~~~~~~---~~~ 292 (445)
++|+.++. +|+.++++.+. ..|+|+. ...+...+. .+.++||||||||.+.+.+.... ...
T Consensus 91 ~la~~l~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~ 163 (376)
T 1um8_A 91 TLAKHLDI-------PIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVS 163 (376)
T ss_dssp HHHHHTTC-------CEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------
T ss_pred HHHHHhCC-------CEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccc
Confidence 99998865 89999998875 4577764 344555543 44679999999999987643211 111
Q ss_pred HHHHHHHHHhhccCC-----------------------cEEEEEecCchhHHHH--------------------------
Q 013316 293 GIEALEEIMSVMDGG-----------------------KVVVIFAGYSEPMKRV-------------------------- 323 (445)
Q Consensus 293 ~~~~~~~ll~~~~~~-----------------------~~~~i~a~~~~~~~~~-------------------------- 323 (445)
...+++.|+..|++. ++++|++++.......
T Consensus 164 ~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~ 243 (376)
T 1um8_A 164 GEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAIL 243 (376)
T ss_dssp CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSG
T ss_pred hHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHH
Confidence 124788899988854 2366666553222211
Q ss_pred ----------HhhCcccccccccceeCCCCCHHHHHHHHHH----HHhcccccccccccccCCcccHHHHHHHHHHHHHH
Q 013316 324 ----------IASNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE 389 (445)
Q Consensus 324 ----------~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 389 (445)
....|+|++||+.++.|++++.+++..|+.. ++.+....+...+. ...++++++..+..+.|.
T Consensus 244 ~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~l~~~~~~- 320 (376)
T 1um8_A 244 HLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEV--DLIFEEEAIKEIAQLALE- 320 (376)
T ss_dssp GGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTC--EEEECHHHHHHHHHHHHH-
T ss_pred hhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCc--eEEECHHHHHHHHHHhcc-
Confidence 1236889999999999999999999999973 33332222211112 235778898888877662
Q ss_pred hhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHH
Q 013316 390 KQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAG 436 (445)
Q Consensus 390 ~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a 436 (445)
..+|+|.+++++++++.....+.... ......||.+++.+.
T Consensus 321 ---~~~~~R~L~~~le~~~~~~~~~~~~~---~~~~~~i~~~~v~~~ 361 (376)
T 1um8_A 321 ---RKTGARGLRAIIEDFCLDIMFDLPKL---KGSEVRITKDCVLKQ 361 (376)
T ss_dssp ---TTCTGGGHHHHHHHHHHHHHHTGGGG---TTSEEEECHHHHTTS
T ss_pred ---cccCcHHHHHHHHHHHHHHHhhccCC---CCCEEEEeHHHhcCC
Confidence 25899999999999977655543221 223457899988754
No 43
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.89 E-value=6.9e-23 Score=173.12 Aligned_cols=134 Identities=25% Similarity=0.329 Sum_probs=71.2
Q ss_pred chHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH
Q 013316 14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA 93 (445)
Q Consensus 14 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~ 93 (445)
.++||.|+..|+.++++.|+.. +.+++ .+. .|+||||+|+..|+.+++++|++. |++++.+|..|.||||+|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~-g~~~~-~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~ 75 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMAN-GAPFT-TDW-LGTSPLHLAAQYGHFSTTEVLLRA----GVSRDARTKVDRTPLHMAA 75 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCT-TCCCHHHHHHHHTCHHHHHHHHTT----TCCTTCCCTTCCCHHHHHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHc-CCCCC-cCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHH
Confidence 3555555555555555555543 23333 222 355555555555555555555553 4555555555555555555
Q ss_pred HcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhh
Q 013316 94 KNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACS 155 (445)
Q Consensus 94 ~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~ 155 (445)
..|+.+++++|+++|++++.+|..|+||| |+|+..++.+++++|++++++...++..+.++
T Consensus 76 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 136 (153)
T 1awc_B 76 SEGHANIVEVLLKHGADVNAKDMLKMTAL-HWATEHNHQEVVELLIKYGADVHTQSKFCKTA 136 (153)
T ss_dssp HHTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred HcChHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 55555555555555555555555555555 44444555555555555555544443333333
No 44
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.89 E-value=1.1e-22 Score=174.93 Aligned_cols=143 Identities=29% Similarity=0.335 Sum_probs=120.5
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 013316 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (445)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpL 89 (445)
...+.++||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|++. |++++.+|..|.|||
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L 84 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMA-NGADVNAEDA-SGWTPLHLAAFNGHLEIVEVLLKN----GADVNAVDHAGMTPL 84 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHH-CCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCccCCCCCCHH
Confidence 3457889999999999999988775 5788888886 799999999999999999999985 788888999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316 90 HMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA 159 (445)
Q Consensus 90 h~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a 159 (445)
|+|+..|+.+++++|+++|++++.+|..|.||| |+|+..++.+++++|++++++...++..+.++...+
T Consensus 85 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 153 (169)
T 2y1l_E 85 RLAALFGHLEIVEVLLKNGADVNANDMEGHTPL-HLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153 (169)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 999999999999999999999999999999999 777788889999999999888766665555554443
No 45
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=7.3e-23 Score=169.44 Aligned_cols=125 Identities=32% Similarity=0.398 Sum_probs=116.1
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 013316 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (445)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh 90 (445)
..+.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|++. |++++.+|..|.||||
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~d~~g~t~L~ 85 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMA-NGADVNAKDE-YGLTPLYLATAHGHLEIVEVLLKN----GADVNAVDAIGFTPLH 85 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTCCCHHH
T ss_pred ccccHHHHHHHHhCCHHHHHHHHH-cCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCcCCCCCCCHHH
Confidence 458899999999999999998886 5889999987 799999999999999999999995 8899999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhh
Q 013316 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS 142 (445)
Q Consensus 91 ~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~ 142 (445)
+|+..|+.+++++|+++|++++.+|..|+||| ++|...++.+++++|+++|
T Consensus 86 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl-~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 86 LAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF-DISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHH-HHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999999999999999999 7888889999999998764
No 46
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.89 E-value=7.7e-23 Score=174.36 Aligned_cols=124 Identities=28% Similarity=0.379 Sum_probs=68.8
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHH
Q 013316 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (445)
Q Consensus 13 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A 92 (445)
..||||+|+..|+.++++.|+. .+.+++..+. .|+||||+|+. |+.+++++|++. |++++.+|..|.||||+|
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~-~g~t~L~~A~~-~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A 77 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQ-NNVNVNAQNG-FGRTALQVMKL-GNPEIARRLLLR----GANPDLKDRTGFAVIHDA 77 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTT-SCCCTTCCCT-TSCCHHHHCCS-SCHHHHHHHHHT----TCCTTCCCTTSCCHHHHH
T ss_pred HhhHHHHHHHcCCHHHHHHHHh-CCCCccccCc-cCccHHHHHHc-CcHHHHHHHHHc----CCCCCCCCCCCCCHHHHH
Confidence 3455555555555555555543 3455555554 45555555555 555555555553 455555555555555555
Q ss_pred HHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316 93 AKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144 (445)
Q Consensus 93 ~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~ 144 (445)
+..|+.+++++|+++|++++.+|..|+||| |+|+..++.+++++|++++++
T Consensus 78 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~ 128 (162)
T 1ihb_A 78 ARAGFLDTLQTLLEFQADVNIEDNEGNLPL-HLAAKEGHLRVVEFLVKHTAS 128 (162)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHSCC
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHHccCC
Confidence 555555555555555555555555555555 444555555555555555544
No 47
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.89 E-value=9.7e-23 Score=176.99 Aligned_cols=143 Identities=23% Similarity=0.263 Sum_probs=126.7
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 013316 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (445)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh 90 (445)
..+.++||.||..|+.+.++.|+...+.+++..+. .|+||||+|+..|+.+++++|++. |++++.+|..|.||||
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~ 77 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDD-HGFSPLHWACREGRSAVVEMLIMR----GARINVMNRGDDTPLH 77 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCC-CCCCHHHHHHHcCcHHHHHHHHHc----CCCCCCcCCCCCCHHH
Confidence 45788999999999999999999888888999887 799999999999999999999995 8899999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA 159 (445)
Q Consensus 91 ~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a 159 (445)
+|+..|+.+++++|+++|++++.+|..|.||| |+|+..++.+++++|++++++...++..+.++...+
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A 145 (179)
T 3f6q_A 78 LAASHGHRDIVQKLLQYKADINAVNEHGNVPL-HYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145 (179)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGS
T ss_pred HHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHH
Confidence 99999999999999999999999999999999 778888899999999999998877776666665544
No 48
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.88 E-value=3.6e-22 Score=170.83 Aligned_cols=138 Identities=28% Similarity=0.411 Sum_probs=77.0
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~ 91 (445)
.+.+|||.|+..|+.+.++.|+...+.+++..+. .|+||||+|+..|+.+++++|+++ |++++.+|..|.||||+
T Consensus 7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~ 81 (165)
T 3twr_A 7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG-RQSTPLHFAAGYNRVSVVEYLLQH----GADVHAKDKGGLVPLHN 81 (165)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTT-TCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHcCCCCcccccc-CCCCHHHHHHHcChHHHHHHHHhc----CCCCCccCCCCCCHHHH
Confidence 3455556666555555555555544445555444 455566665555555555555553 45555555555566666
Q ss_pred HHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhh
Q 013316 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACS 155 (445)
Q Consensus 92 A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~ 155 (445)
|+..|+.+++++|+++|++++.+|.+|+||| |+|+..++.+++++|+++++++..++..+.++
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 144 (165)
T 3twr_A 82 ACSYGHYEVAELLVKHGAVVNVADLWKFTPL-HEAAAKGKYEICKLLLQHGADPTKKNRDGNTP 144 (165)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred HHHcCcHHHHHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCh
Confidence 5555555555555555555555555555665 44555555555555555555554444333333
No 49
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.88 E-value=8.3e-23 Score=201.53 Aligned_cols=209 Identities=20% Similarity=0.254 Sum_probs=150.5
Q ss_pred HHHhhhcchHHH---HHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316 167 ELSNIVGLHELK---IQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 243 (445)
Q Consensus 167 ~~~~l~g~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~ 243 (445)
.|++++|++.++ ..+...+.. ....+++|+||||||||++|++||+.+.. +|+.
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~----------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~-------~f~~ 80 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEA----------------GHLHSMILWGPPGTGKTTLAEVIARYANA-------DVER 80 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHH----------------TCCCEEEEECSTTSSHHHHHHHHHHHTTC-------EEEE
T ss_pred CHHHhCCcHHHHhchHHHHHHHHc----------------CCCcEEEEECCCCCcHHHHHHHHHHHhCC-------CeEE
Confidence 467799999988 556554432 23468999999999999999999999865 7888
Q ss_pred eecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecC
Q 013316 244 VQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY 316 (445)
Q Consensus 244 ~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~ 316 (445)
+++... ....++.++..+ .++||||||||.+.. ..++.|+..++++.+++|++|+
T Consensus 81 l~a~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~-----------~~q~~LL~~le~~~v~lI~att 142 (447)
T 3pvs_A 81 ISAVTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK-----------SQQDAFLPHIEDGTITFIGATT 142 (447)
T ss_dssp EETTTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHTTSCEEEEEES
T ss_pred EEeccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH-----------HHHHHHHHHHhcCceEEEecCC
Confidence 876543 234455555443 579999999999976 4567789999999999999988
Q ss_pred chhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccC
Q 013316 317 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 396 (445)
Q Consensus 317 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n 396 (445)
.++... .+++|++|| .++.|++|+.+++.+++++++.+....++.. ...++++++..+.. +| +||
T Consensus 143 ~n~~~~---l~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~~~~~~~~~----~~~i~~~al~~L~~-~~------~Gd 207 (447)
T 3pvs_A 143 ENPSFE---LNSALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQ----DIVLPDETRRAIAE-LV------NGD 207 (447)
T ss_dssp SCGGGS---SCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHCTTTSSTTS----SEECCHHHHHHHHH-HH------CSC
T ss_pred CCcccc---cCHHHhCce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhccc----cCcCCHHHHHHHHH-HC------CCC
Confidence 766543 389999999 5888999999999999999998754333322 23466777775554 46 789
Q ss_pred chhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316 397 GGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 438 (445)
Q Consensus 397 ~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~ 438 (445)
.|.+.++++++...... ...+...||.+++.++++
T Consensus 208 ~R~lln~Le~a~~~a~~-------~~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 208 ARRALNTLEMMADMAEV-------DDSGKRVLKPELLTEIAG 242 (447)
T ss_dssp HHHHHHHHHHHHHHSCB-------CTTSCEECCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccc-------ccCCCCccCHHHHHHHHh
Confidence 99999999998543211 111224688888877765
No 50
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.88 E-value=3.3e-23 Score=175.81 Aligned_cols=138 Identities=20% Similarity=0.236 Sum_probs=116.7
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCc-H
Q 013316 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET-P 88 (445)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~t-p 88 (445)
...|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+ .|+.+++++|+++ |++++.+|..|.| |
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~-~~~~~~v~~Ll~~----g~~~~~~d~~g~ttp 81 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLE-AGANPNAPNS-YGRRPIQVMM-MGSARVAELLLLH----GAEPNCADPATLTRP 81 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHT-TTCCTTCCCS-SSCCTTTSSC-TTCHHHHHHHHTT----TCCCCCCCTTTCCCH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHH-cCCCCCCCCC-CCCCHHHHHH-cCCHHHHHHHHHc----CCCCCCcCCCCCcHH
Confidence 3468999999999999999998886 5889999987 7999999985 8999999999995 8899999999999 9
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhh
Q 013316 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACS 155 (445)
Q Consensus 89 Lh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~ 155 (445)
||+|+..|+.+++++|+++|++++.+|..|+||| ++|...++.+++++|+++|+++..++..+.++
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl-~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 147 (156)
T 1bi7_B 82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPV-DLAEELGHRDVARYLRAAAGGTRGSNHARIDA 147 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHH-HHHHHHTCHHHHHHHSSCC-------------
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHH-HHHHHhCHHHHHHHHHHcCCCCCccCcCcCcc
Confidence 9999999999999999999999999999999999 78888899999999999999988776555443
No 51
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.88 E-value=1.6e-22 Score=173.47 Aligned_cols=140 Identities=21% Similarity=0.251 Sum_probs=126.0
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~ 91 (445)
.|.||||+||..|+.++++.|+.. +.+++..+. .|+||||+|+..|+.+++++|++. |++++.++..|.||||+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~ 75 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDE-EGFTPLMWAAAHGQIAVVEFLLQN----GADPQLLGKGRESALSL 75 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCCCC-CCCCHHHHHHHCCCHHHHHHHHHc----CCCCCCcCCCCCcHHHH
Confidence 478999999999999999999876 678898887 799999999999999999999995 88999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhH
Q 013316 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETK 158 (445)
Q Consensus 92 A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~ 158 (445)
|+..|+.+++++|+++|++++.+|..|.||| |+|+..++.+++++|+++++++..++..+.++...
T Consensus 76 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~ 141 (167)
T 3v31_A 76 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL-LYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL 141 (167)
T ss_dssp HHHHTCHHHHHHHHHHTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCcCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 9999999999999999999999999999999 77888899999999999998877766555555443
No 52
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.88 E-value=1.3e-22 Score=184.76 Aligned_cols=142 Identities=22% Similarity=0.203 Sum_probs=118.8
Q ss_pred CCCccCccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316 1 MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (445)
Q Consensus 1 l~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~ 80 (445)
++.|++++....|.||||+||..|+.++++.|+. .+.++|..+. .|+||||+|+..|+.+++++|+++ |++++.
T Consensus 25 l~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~ 98 (239)
T 1ycs_B 25 IAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIY-EVDDPSLPND-EGITALHNAVCAGHTEIVKFLVQF----GVNVNA 98 (239)
T ss_dssp ------------CHHHHHHHHHHTCHHHHHHHTS-TTSSCCCCCT-TSCCHHHHHHHHTCHHHHHHHHHH----TCCTTC
T ss_pred hccCCCcccCchhhHHHHHHHHcCCHHHHHHHHH-cCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCc
Confidence 4678888888889999999999999999998875 5779999987 799999999999999999999995 889999
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCC-Chhhhhh--cCCCChHHHHHHHhhhhhHHhhh
Q 013316 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGK-TPLDHLS--NGPGSAKLRELLLWHSEEQRKRR 149 (445)
Q Consensus 81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~-tpl~~~a--~~~~~~~i~~~ll~~~~~~~~~~ 149 (445)
+|..|.||||+|+..|+.+++++|+++|++++.++..|. ||+ ++| ...++.+++++|+.++++....+
T Consensus 99 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l-~~a~~~~~g~~~~~~~Ll~~~a~~~~~~ 169 (239)
T 1ycs_B 99 ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAA-DKCEEMEEGYTQCSQFLYGVQEKMGIMN 169 (239)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHH-HHCCSSSTTCCCHHHHHHHHHHHTTTTG
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchH-HHHHHhhhccHHHHHHHHHhhhcccccc
Confidence 999999999999999999999999999999999998887 999 666 67788999999999998866543
No 53
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.88 E-value=1.2e-22 Score=173.86 Aligned_cols=131 Identities=27% Similarity=0.402 Sum_probs=116.8
Q ss_pred cCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccC
Q 013316 5 QDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM 83 (445)
Q Consensus 5 ~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~ 83 (445)
.+.+..+ .|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++ |++++.+|.
T Consensus 33 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~ 106 (165)
T 3twr_A 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDK-GGLVPLHNACSYGHYEVAELLVKH----GAVVNVADL 106 (165)
T ss_dssp TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCT
T ss_pred CCccccccCCCCHHHHHHHcChHHHHHHHHh-cCCCCCccCC-CCCCHHHHHHHcCcHHHHHHHHhC----CCCCCCcCC
Confidence 3444433 58899999999999999998885 5889999987 799999999999999999999995 889999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhh
Q 013316 84 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSE 143 (445)
Q Consensus 84 ~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~ 143 (445)
+|.||||+|+..|+.+++++|+++|++++.+|..|.||+ ++|.. ++.+++++|++.++
T Consensus 107 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 107 WKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL-DLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTG-GGSCT-TCHHHHHHHHTC--
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChh-HhHhc-CChHHHHHHhhccc
Confidence 999999999999999999999999999999999999999 66666 78899999987764
No 54
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.88 E-value=2.1e-22 Score=172.74 Aligned_cols=136 Identities=19% Similarity=0.227 Sum_probs=124.0
Q ss_pred CccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316 3 KNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (445)
Q Consensus 3 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~ 81 (445)
.|++.+..+ .|.||||+|+..|+.++++.|+. .+.+++..+. .|.||||+|+..|+.+++++|+++ |++++.+
T Consensus 25 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~ 98 (167)
T 3v31_A 25 QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGK-GRESALSLACSKGYTDIVKMLLDC----GVDVNEY 98 (167)
T ss_dssp HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHH----TCCTTCC
T ss_pred cCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHHC----CCCCCcC
Confidence 456666655 69999999999999999998886 4889999887 799999999999999999999995 8899999
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhH
Q 013316 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQ 145 (445)
Q Consensus 82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~ 145 (445)
|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+ ++|...++.+++++|++++.+.
T Consensus 99 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~L~~~~~~~ 161 (167)
T 3v31_A 99 DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM-DLAVALGYRSVQQVIESHLLKL 161 (167)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 7888889999999999887653
No 55
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.88 E-value=4.1e-22 Score=162.02 Aligned_cols=126 Identities=37% Similarity=0.531 Sum_probs=117.6
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~ 91 (445)
.|.||||+|+..|+.++++.|+.. +.+++..+. .|.||||+|+..++.+++++|++. |++++.+|..|.||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~l~~ 74 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHL 74 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCcCC-CCCcHHHHHHHcCcHHHHHHHHHc----CCCCcccCCCCCcHHHH
Confidence 478999999999999999988865 788888886 799999999999999999999995 88999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144 (445)
Q Consensus 92 A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~ 144 (445)
|+..++.+++++|+++|++++.+|..|.||+ ++|...++.+++++|+++|++
T Consensus 75 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 75 AARNGHLEVVKLLLEAGADVNAKDKNGRTPL-HLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHcChHHHHHHHHHcCCCCcccCCCCCCHH-HHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999 788888999999999988864
No 56
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.88 E-value=2.7e-22 Score=181.40 Aligned_cols=144 Identities=22% Similarity=0.185 Sum_probs=125.3
Q ss_pred CCCccCccCCC----CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCc
Q 013316 1 MQKNQDRRSRS----AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76 (445)
Q Consensus 1 l~~~~~~~~~~----~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~ 76 (445)
+++|++++... .+.||||+||..|+.++++.|+. .+.++|..+. .|+||||+|+..|+.+++++|++. |+
T Consensus 5 l~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~----ga 78 (229)
T 2vge_A 5 LRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVK-EMNDPSQPNE-EGITALHNAICGANYSIVDFLITA----GA 78 (229)
T ss_dssp -----CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHH-HSSCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TC
T ss_pred hccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHh-cCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHC----CC
Confidence 35667665432 57889999999999999999886 4789999987 799999999999999999999995 89
Q ss_pred ccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccc-cCCCChhhhhh--cCCCChHHHHHHHhhhhhHHhhhhh
Q 013316 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-NEGKTPLDHLS--NGPGSAKLRELLLWHSEEQRKRRAL 151 (445)
Q Consensus 77 ~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~-~~g~tpl~~~a--~~~~~~~i~~~ll~~~~~~~~~~~~ 151 (445)
+++.+|..|.||||+|+..|+.+++++|+++|++++.++ ..|+||| ++| ...++.+++++|++++++....+..
T Consensus 79 ~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL-~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~ 155 (229)
T 2vge_A 79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAF-EKCDPYREGYADCATYLADVEQSMGLMNSG 155 (229)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTG-GGCCTTSTTHHHHHHHHHHHHHHTTTSGGG
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHH-HHHHHHhcChHHHHHHHHHcCCCcccccCC
Confidence 999999999999999999999999999999999999986 6999999 777 8899999999999999987776543
No 57
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.88 E-value=2.7e-22 Score=174.16 Aligned_cols=137 Identities=26% Similarity=0.357 Sum_probs=125.1
Q ss_pred ccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccccc
Q 013316 4 NQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN 82 (445)
Q Consensus 4 ~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d 82 (445)
+.+.+..+ .|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++ |++++.+|
T Consensus 29 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~d 102 (179)
T 3f6q_A 29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIM-RGARINVMNR-GDDTPLHLAASHGHRDIVQKLLQY----KADINAVN 102 (179)
T ss_dssp TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCC
T ss_pred cccccccCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCccC
Confidence 45556555 69999999999999999998885 5899999987 799999999999999999999995 88999999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHh
Q 013316 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 147 (445)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~ 147 (445)
..|.||||+|+..|+.+++++|+++|++++.+|..|.||+ ++|...++.+++++|++++++...
T Consensus 103 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl-~~A~~~~~~~~~~~L~~~g~~~~~ 166 (179)
T 3f6q_A 103 EHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV-DKAKAPLRELLRERAEKMGQNLNR 166 (179)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGG-GGSCHHHHHHHHHHHHHTTCCCSC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcH-HHHHHHHHHHHHHHHHHhhcCccc
Confidence 9999999999999999999999999999999999999999 778888899999999999987654
No 58
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.88 E-value=8.9e-23 Score=187.49 Aligned_cols=138 Identities=25% Similarity=0.333 Sum_probs=71.2
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCC------------------
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN------------------ 73 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~------------------ 73 (445)
.|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|++.+..
T Consensus 56 ~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 133 (253)
T 1yyh_A 56 TGETALHLAARYSRSDAAKRLLE-ASADANIQDN-MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 133 (253)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHH
Confidence 45555555555555555554443 3455555554 455555555555555555555553100
Q ss_pred ------------CCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhh
Q 013316 74 ------------DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141 (445)
Q Consensus 74 ------------~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~ 141 (445)
.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||| ++|+..++.+++++|+++
T Consensus 134 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL-~~A~~~~~~~~v~~Ll~~ 212 (253)
T 1yyh_A 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPL-FLAAREGSYETAKVLLDH 212 (253)
T ss_dssp HTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHT
T ss_pred cChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHCCCHHHHHHHHHc
Confidence 1444555555555555555555555555555555555555555555555 444444555555555555
Q ss_pred hhhHHhhhhhh
Q 013316 142 SEEQRKRRALE 152 (445)
Q Consensus 142 ~~~~~~~~~~~ 152 (445)
+++...++..+
T Consensus 213 ga~~~~~d~~g 223 (253)
T 1yyh_A 213 FANRDITDHMD 223 (253)
T ss_dssp TCCTTCCCTTC
T ss_pred CCCccccccCC
Confidence 55544443333
No 59
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.88 E-value=3e-22 Score=185.30 Aligned_cols=206 Identities=16% Similarity=0.179 Sum_probs=146.0
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|+++.+..+.+.+... ...+.+++|+||||||||++|+++|+.+... ..+|+.++|
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~--------------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~----~~~~~~v~~ 65 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHL--------------APLDKPVLIIGERGTGKELIASRLHYLSSRW----QGPFISLNC 65 (265)
T ss_dssp ------CCCHHHHHHHHHHHHH--------------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTT----TSCEEEEEG
T ss_pred ccccceeCCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCCcHHHHHHHHHHhcCcc----CCCeEEEec
Confidence 5778999999998888766544 2346789999999999999999999877542 238999999
Q ss_pred cccc-----ccccCCchhH-------HHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-------
Q 013316 247 TDLV-----GEFVGHTGPK-------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------- 307 (445)
Q Consensus 247 ~~l~-----~~~~g~~~~~-------~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------- 307 (445)
+.+. ..++|..... ....|..+.+++|||||||.+.+ +.+..|+..++.+
T Consensus 66 ~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~ 134 (265)
T 2bjv_A 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM-----------MVQEKLLRVIEYGELERVGG 134 (265)
T ss_dssp GGSCHHHHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH-----------HHHHHHHHHHHHCEECCCCC
T ss_pred CCCChhHHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH-----------HHHHHHHHHHHhCCeecCCC
Confidence 8763 2345542211 12356677889999999999876 6677888887743
Q ss_pred ------cEEEEEecCchhHHHHH--hhCcccccccc-cceeCCCCCH--HHHHHHHHHHHhcccccccccccccCCcccH
Q 013316 308 ------KVVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSM 376 (445)
Q Consensus 308 ------~~~~i~a~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 376 (445)
.+.+|++++......+. ..++.|.+||. ..+.+|+++. +++..++++++.+.....+ ......+++
T Consensus 135 ~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~---~~~~~~~~~ 211 (265)
T 2bjv_A 135 SQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIK---LPLFPGFTE 211 (265)
T ss_dssp --CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTT---CSSCCCBCH
T ss_pred cccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhC---CCcccCcCH
Confidence 46788888775444322 23688999995 5689999985 8999999998877543322 111136788
Q ss_pred HHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHh
Q 013316 377 DAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 410 (445)
Q Consensus 377 ~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~ 410 (445)
+++..+..+.| ++|.|+++++++++...
T Consensus 212 ~a~~~L~~~~~------~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 212 RARETLLNYRW------PGNIRELKNVVERSVYR 239 (265)
T ss_dssp HHHHHHHHSCC------TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC------CCCHHHHHHHHHHHHHh
Confidence 89887776666 89999999999998543
No 60
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.88 E-value=2.7e-22 Score=176.19 Aligned_cols=142 Identities=23% Similarity=0.289 Sum_probs=124.2
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 013316 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (445)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh 90 (445)
..|.||||+||..|+.++++.|+.. +.+++..+. .|+||||+|+..|+.+++++|++. |++++.+|..|.||||
T Consensus 33 ~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~ 106 (192)
T 2rfm_A 33 SYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDI-EGSTALIWAVKNNRLGIAEKLLSK----GSNVNTKDFSGKTPLM 106 (192)
T ss_dssp TTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHH----TCCTTCCCTTSCCHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHh-ccccccccc-cCccHHHHHHHcCCHHHHHHHHHC----CCCCCCCCCCCCcHHH
Confidence 3689999999999999999988865 678888886 799999999999999999999985 7889999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA 159 (445)
Q Consensus 91 ~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a 159 (445)
+|+..|+.+++++|+++|++++.+|..|.||| |+|+..++.+++++|+++++++..++..+.++...+
T Consensus 107 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 174 (192)
T 2rfm_A 107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPL-IVASKYGRSEIVKKLLELGADISARDLTGLTAEASA 174 (192)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHH-HHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence 99999999999999999999999999999999 778888899999999999988777665555555444
No 61
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.87 E-value=1.2e-21 Score=182.63 Aligned_cols=227 Identities=23% Similarity=0.309 Sum_probs=160.7
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|.++++.++.++......+........ ..+.+++|+||||||||+++++|+..+.. +++.+++
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~----~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-------~~i~~~~ 106 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGA----RIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITASG 106 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTC----CCCCEEEEECCTTSSHHHHHHHHHHHTTC-------CEEEEEH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCC----CCCCeEEEECCCcChHHHHHHHHHHHcCC-------CEEEecH
Confidence 467899999999999887665443333333333 34567999999999999999999998753 8899999
Q ss_pred ccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCC---CchhHHHHHHHHHhhccCC---c-EEEEEecC
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDGG---K-VVVIFAGY 316 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~~---~-~~~i~a~~ 316 (445)
.++...+.+.....+..+|+.+. ++++|+||+|.+...+... ......+.++.++..++++ + ++++++++
T Consensus 107 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~ 186 (278)
T 1iy2_A 107 SDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATN 186 (278)
T ss_dssp HHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEES
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecC
Confidence 88877777777777778888764 4899999999997655421 1233346667777777652 3 45555554
Q ss_pred chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316 317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 394 (445)
Q Consensus 317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 394 (445)
.... .||++++ ||+..+.|+.|+.+++.+|++.+++.. .+.++++.. .++..| +
T Consensus 187 ~p~~-----ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~---------~~~~~~~~~----~la~~~------~ 242 (278)
T 1iy2_A 187 RPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAEDVDLA----LLAKRT------P 242 (278)
T ss_dssp CTTS-----SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS---------CBCTTCCHH----HHHHTC------T
T ss_pred Cchh-----CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC---------CCCcccCHH----HHHHHc------C
Confidence 4332 3888887 899999999999999999999887643 333444333 344555 5
Q ss_pred cCc-hhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHH
Q 013316 395 MNG-GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 437 (445)
Q Consensus 395 ~n~-r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~ 437 (445)
||. +++++++++|......+ +...|+.+|+++++
T Consensus 243 G~~~~dl~~l~~~a~~~a~~~---------~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 243 GFVGADLENLLNEAALLAARE---------GRRKITMKDLEEAA 277 (278)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT---------TCCSBCHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHh---------CCCCcCHHHHHHHh
Confidence 655 89999999885433221 12369999999875
No 62
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.87 E-value=1.9e-22 Score=173.88 Aligned_cols=141 Identities=25% Similarity=0.306 Sum_probs=126.3
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHH
Q 013316 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (445)
Q Consensus 13 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A 92 (445)
+.+|||+||..|+.+.++.++...+..++..+. .|+||||+|+..|+.+++++|+++ |++++.+|..|.||||+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A 76 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDE-RGFTPLIWASAFGEIETVRFLLEW----GADPHILAKERESALSLA 76 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCT-TSCCHHHHHHHTTCHHHHHHHHHH----TCCTTCCCTTCCCHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCchhhcccCCCHHHHH
Confidence 468999999999999999999877666888886 799999999999999999999995 889999999999999999
Q ss_pred HHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316 93 AKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA 159 (445)
Q Consensus 93 ~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a 159 (445)
+..|+.+++++|+++|++++.+|..|+||| |+|+..++.+++++|++++++...++..+.++...+
T Consensus 77 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 142 (172)
T 3v30_A 77 STGGYTDIVGLLLERDVDINIYDWNGGTPL-LYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLA 142 (172)
T ss_dssp HHTTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHCCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence 999999999999999999999999999999 788888999999999999988877766555554433
No 63
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.87 E-value=3.7e-25 Score=233.72 Aligned_cols=178 Identities=20% Similarity=0.305 Sum_probs=144.0
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|++.+++.|.+.+ .++..+++.+...+..++.+++|+||||||||++|+++|..++. +|+.+++
T Consensus 475 ~~~di~gl~~vk~~l~~~v---~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~-------~~i~v~~ 544 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELV---QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIKG 544 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTT---TSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC-------CCCCCCC
T ss_pred cccccccchhhhhhHHHHH---HhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC-------CEEEEec
Confidence 3567899999999988743 33333444455556667889999999999999999999999876 8889999
Q ss_pred ccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCc---hhHHHHHHHHHhhccC----CcEEEEEecC
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDK---DYGIEALEEIMSVMDG----GKVVVIFAGY 316 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~---~~~~~~~~~ll~~~~~----~~~~~i~a~~ 316 (445)
+++.+.|+|+++..++.+|+.+. ++||||||||.+.+.++.... ....+++++|+..|++ ..+++|++|+
T Consensus 545 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN 624 (806)
T 1ypw_A 545 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 624 (806)
T ss_dssp SSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCB
T ss_pred hHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecC
Confidence 99999999999999999998774 489999999999988764332 3556889999999985 4567777766
Q ss_pred chhHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcc
Q 013316 317 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQ 359 (445)
Q Consensus 317 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~ 359 (445)
.... +||++++ ||+..|+|+.|+.+++.+|++.++++.
T Consensus 625 ~~~~-----ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~ 664 (806)
T 1ypw_A 625 RPDI-----IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS 664 (806)
T ss_dssp SCGG-----GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC
T ss_pred Cccc-----CCHHHhCccccCceeecCCCCHHHHHHHHHHHhccC
Confidence 5433 3999999 999999999999999999999988764
No 64
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.87 E-value=3.2e-22 Score=179.79 Aligned_cols=149 Identities=21% Similarity=0.250 Sum_probs=98.7
Q ss_pred CCccCccCC--CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccc
Q 013316 2 QKNQDRRSR--SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79 (445)
Q Consensus 2 ~~~~~~~~~--~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~ 79 (445)
+.|++.+.. ..|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|++.+ ..+++
T Consensus 12 ~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~---~~~~~ 86 (223)
T 2f8y_A 12 YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADANIQDN-MGRTPLHAAVSADAQGVFQILIRNR---ATDLD 86 (223)
T ss_dssp ETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHBT---TSCTT
T ss_pred HcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHH-cCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcC---CCCcc
Confidence 345555443 357777777777777777776664 4667777765 5777777777777777777777641 22566
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhh
Q 013316 80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSE 156 (445)
Q Consensus 80 ~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~ 156 (445)
.++..|.||||+|+..++.+++++|+++|++++.++..|.||| |+|+..++.+++++|++++++...++..+.++.
T Consensus 87 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 162 (223)
T 2f8y_A 87 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL-HWAAAVNNVDAAVVLLKNGANKDMQNNREETPL 162 (223)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred cCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHH-HHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHH
Confidence 6666777777777777777777777777777777777777777 556666667777777776666555444333333
No 65
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.87 E-value=9.8e-22 Score=178.43 Aligned_cols=139 Identities=24% Similarity=0.270 Sum_probs=88.8
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCC-----CCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCC
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENP-----SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK 75 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~-----~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g 75 (445)
++|++++..+ .|.||||+||..|+.++++.|+.... ..++..+. .|+||||+|+..|+.+++++|+++ |
T Consensus 66 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g 140 (236)
T 1ikn_D 66 GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY-NGHTCLHLASIHGYLGIVELLVSL----G 140 (236)
T ss_dssp SCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCT-TCCCHHHHHHHTTCHHHHHHHHHH----T
T ss_pred HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCC-CCCCHHHHHHHcCCHHHHHHHHHc----C
Confidence 4566666554 46666666666666666666654321 11344443 566677777666666677766663 6
Q ss_pred cccccccC-CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHH
Q 013316 76 VELEAQNM-YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 146 (445)
Q Consensus 76 ~~v~~~d~-~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~ 146 (445)
++++.++. .|.||||+|+..|+.+++++|+++|++++.+|..|+||| ++|...++.+++++|+++|++..
T Consensus 141 ~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl-~~A~~~~~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 141 ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPY-QLTWGRPSTRIQQQLGQLTLENL 211 (236)
T ss_dssp CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGG-GGCTTSSCHHHHHHHHTTSCGGG
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHH-HHHHccCchHHHHHHHHcchhhh
Confidence 66666665 667777777777777777777777777777777777776 56666666777777776666543
No 66
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.87 E-value=1.9e-22 Score=177.15 Aligned_cols=133 Identities=25% Similarity=0.254 Sum_probs=122.3
Q ss_pred CccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316 3 KNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (445)
Q Consensus 3 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~ 81 (445)
.|++++..+ .|.||||+|+..|+.++++.|+.. +.+++..+. .|+||||+|+..|+.+++++|+++ |++++.+
T Consensus 57 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~ 130 (192)
T 2rfm_A 57 NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDF-SGKTPLMWSIIFGYSEMSYFLLEH----GANVNDR 130 (192)
T ss_dssp HHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----TCCSSCC
T ss_pred hccccccccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHC----CCCCCCC
Confidence 456666655 699999999999999999988865 788999987 799999999999999999999995 8899999
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhh
Q 013316 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS 142 (445)
Q Consensus 82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~ 142 (445)
|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+ ++|...++.+++++|++++
T Consensus 131 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 131 NLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAE-ASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHH-HHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH-HHHHHhCcHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999 7888899999999998765
No 67
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.87 E-value=5e-22 Score=170.77 Aligned_cols=134 Identities=31% Similarity=0.411 Sum_probs=123.0
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~ 80 (445)
+.|++++..+ .|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++ |++++.
T Consensus 35 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~ 108 (169)
T 2y1l_E 35 ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVDH-AGMTPLRLAALFGHLEIVEVLLKN----GADVNA 108 (169)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTC
T ss_pred HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCC
Confidence 4677877765 69999999999999999998885 5889999987 799999999999999999999995 889999
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhh
Q 013316 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS 142 (445)
Q Consensus 81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~ 142 (445)
+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+ ++|...++.+++++|++.|
T Consensus 109 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 109 NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF-DISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHTC-
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHhCCHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999 7888889999999998764
No 68
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=6.1e-22 Score=160.78 Aligned_cols=110 Identities=25% Similarity=0.274 Sum_probs=101.5
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 013316 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (445)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh 90 (445)
..|.||||+|+..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++ |++++.+|..|.||||
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~d~~g~tpL~ 78 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVA-KGEDVNRTLE-GGRKPLHYAADCGQLEILEFLLLK----GADINAPDKHHITPLL 78 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCCT-TSSCHHHHHHHTTCHHHHHHHHTT----TCCTTCCCTTSCCHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHH-cCCCcCccCC-CCCcHHHHHHHcCCHHHHHHHHHc----CCCCCcCCCCCCCHHH
Confidence 468899999999999999998886 5788999987 799999999999999999999995 8899999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhc
Q 013316 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSN 127 (445)
Q Consensus 91 ~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~ 127 (445)
+|+..++.+++++|+++|++++.+|..|.||+ ++|.
T Consensus 79 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~ 114 (123)
T 3aaa_C 79 SAVYEGHVSCVKLLLSKGADKTVKGPDGLTAF-EATD 114 (123)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHCC
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHhC
Confidence 99999999999999999999999999999999 6663
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.87 E-value=6.1e-22 Score=209.44 Aligned_cols=214 Identities=16% Similarity=0.269 Sum_probs=156.1
Q ss_pred hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316 170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 249 (445)
Q Consensus 170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l 249 (445)
.++|++.+++.+.+.+.... .+......+..++||+||||||||++|+++|+.+... ..+|+.++++.+
T Consensus 492 ~viGq~~a~~~l~~~i~~~~-------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~----~~~~i~i~~s~~ 560 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRAR-------AGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD----EESMIRIDMSEY 560 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHT-------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC----TTCEEEEEGGGG
T ss_pred cCcChHHHHHHHHHHHHHHH-------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC----CcceEEEechhc
Confidence 48999999988887665332 2222222233379999999999999999999998653 338999999998
Q ss_pred cccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc-------------EEEEEecC
Q 013316 250 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-------------VVVIFAGY 316 (445)
Q Consensus 250 ~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-------------~~~i~a~~ 316 (445)
...+... ...+...+....++||||||||.+.+ ++++.|++.|+++. +++|++++
T Consensus 561 ~~~~~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 561 MEKHSTS-GGQLTEKVRRKPYSVVLLDAIEKAHP-----------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp CSSCCCC----CHHHHHHCSSSEEEEECGGGSCH-----------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ccccccc-cchhhHHHHhCCCeEEEEeCccccCH-----------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 8776654 44455677778899999999998876 88899999998643 47777776
Q ss_pred ch-----hHHHH--HhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHH
Q 013316 317 SE-----PMKRV--IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE 389 (445)
Q Consensus 317 ~~-----~~~~~--~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 389 (445)
.. ..... -...|+|++||+.+|.|++|+.+++.+|++.++.+...++...+. ...++++++..+....+
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~--~~~~~~~a~~~l~~~~~-- 704 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDL--SIELTDAAKAKVAEEGV-- 704 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTC--EEEECHHHHHHHHGGGC--
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCC--eEEECHHHHHHHHHhCC--
Confidence 31 11111 123799999999999999999999999999999887655543333 33678888887765322
Q ss_pred hhhcccCchhhHHHHHHHHHhhh
Q 013316 390 KQRREMNGGLVDPMLVNARENLD 412 (445)
Q Consensus 390 ~~~~~~n~r~l~~~~~~~~~~~~ 412 (445)
.+++|+|.|++++++++....
T Consensus 705 --~~~~~~R~L~~~i~~~v~~~l 725 (758)
T 3pxi_A 705 --DLEYGARPLRRAIQKHVEDRL 725 (758)
T ss_dssp --CTTTTTTTHHHHHHHHTHHHH
T ss_pred --CCCCCChHHHHHHHHHHHHHH
Confidence 348999999999998866443
No 70
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.87 E-value=6.1e-22 Score=174.98 Aligned_cols=152 Identities=20% Similarity=0.256 Sum_probs=131.6
Q ss_pred ccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccccc
Q 013316 4 NQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN 82 (445)
Q Consensus 4 ~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d 82 (445)
+.+++..+ .|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|++. .+.+++.+|
T Consensus 29 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~---~~~~~~~~~ 103 (201)
T 3hra_A 29 TYQVDEVDTEGNTPLNIAVHNNDIEIAKALID-RGADINLQNS-ISDSPYLYAGAQGRTEILAYMLKH---ATPDLNKHN 103 (201)
T ss_dssp TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHH---SCCCTTCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhc---cCccccccc
Confidence 34666655 69999999999999999998885 5889999987 799999999999999999999954 467899999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcC-CCCcccccCCCChhhhhhcCCCC-----hHHHHHHHhhhhhHHhhhhhhhhhh
Q 013316 83 MYGETPLHMAAKNGCNEAAKLLLAHG-AFIEAKANEGKTPLDHLSNGPGS-----AKLRELLLWHSEEQRKRRALEACSE 156 (445)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~~~~Ll~~g-a~~~~~~~~g~tpl~~~a~~~~~-----~~i~~~ll~~~~~~~~~~~~~~~~~ 156 (445)
..|.||||+|+..|+.+++++|++.| ++++.+|..|+||| |+|+..+. .+++++|+++++++..++..+.++.
T Consensus 104 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L-~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l 182 (201)
T 3hra_A 104 RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTAL-IEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAM 182 (201)
T ss_dssp TTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHH-HHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHH-HHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHH
Confidence 99999999999999999999999999 99999999999999 66666665 8999999999999887776666666
Q ss_pred hHHhH
Q 013316 157 TKAKM 161 (445)
Q Consensus 157 ~~a~~ 161 (445)
..+..
T Consensus 183 ~~A~~ 187 (201)
T 3hra_A 183 DYANQ 187 (201)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
No 71
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.87 E-value=8.7e-22 Score=177.99 Aligned_cols=148 Identities=26% Similarity=0.268 Sum_probs=103.5
Q ss_pred CccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316 3 KNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (445)
Q Consensus 3 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~ 81 (445)
.|++++..+ .|.||||+|+..|+.++++.|+. .+.+++..+. .|.||||+|+..++.+++++|++. |++++.+
T Consensus 62 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~ 135 (231)
T 3aji_A 62 LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLV-KGAHVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEG----GANPDAK 135 (231)
T ss_dssp TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCC
T ss_pred hCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHH-cCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCCc
Confidence 455555544 47777777777777777766654 4666666665 577777777777777777777774 6677777
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET 157 (445)
Q Consensus 82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~ 157 (445)
+..|.||||+|+..|+.+++++|+++|++++.+|..|+||| ++|...++.+++++|+++|+++..++..+.++..
T Consensus 136 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~ 210 (231)
T 3aji_A 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPL-HLACDEERVEEAKFLVTQGASIYIENKEEKTPLQ 210 (231)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHH-HHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence 77777777777777777777777777777777777777777 6666667777777777777766655544444443
No 72
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.87 E-value=3e-22 Score=186.51 Aligned_cols=135 Identities=27% Similarity=0.307 Sum_probs=68.9
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCC------------------
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN------------------ 73 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~------------------ 73 (445)
.|.||||+||..|+.++++.|+. .|++++..+. .|+||||+|+..|+.+++++|++.+..
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~ 121 (282)
T 1oy3_D 44 LGQTALHLAAILGEASTVEKLYA-AGAGVLVAER-GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121 (282)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCT-TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCC-CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCc
Confidence 46666666666666666665553 3555555554 455666665555555555555553210
Q ss_pred -------------------------CCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccC-CCChhhhhhc
Q 013316 74 -------------------------DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANE-GKTPLDHLSN 127 (445)
Q Consensus 74 -------------------------~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~-g~tpl~~~a~ 127 (445)
.+.+++.++..|.||||+|+..|+.+++++|+++|++++.++.. |+||| |+|+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL-~~A~ 200 (282)
T 1oy3_D 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL-HLAV 200 (282)
T ss_dssp ----------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH-HHHH
T ss_pred chhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHH-HHHH
Confidence 01224444555555555555555555555555555555544432 55555 4444
Q ss_pred CCCChHHHHHHHhhhhhHHhhh
Q 013316 128 GPGSAKLRELLLWHSEEQRKRR 149 (445)
Q Consensus 128 ~~~~~~i~~~ll~~~~~~~~~~ 149 (445)
..++.+++++|+++++++..++
T Consensus 201 ~~~~~~~v~~Ll~~gad~~~~d 222 (282)
T 1oy3_D 201 EAQAASVLELLLKAGADPTARM 222 (282)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCC
T ss_pred HcCCHHHHHHHHHcCCCCcccc
Confidence 4444555555555544444433
No 73
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.87 E-value=6.1e-22 Score=200.60 Aligned_cols=230 Identities=17% Similarity=0.228 Sum_probs=153.9
Q ss_pred HhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 013316 169 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 248 (445)
Q Consensus 169 ~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~ 248 (445)
++++|+++++..+.+..... ...... +..+++|+||||||||++|++||..+.. ++..++++.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~-------~~~~~~---~g~~vll~Gp~GtGKTtlar~ia~~l~~-------~~~~i~~~~ 143 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQ-------KLTKSL---KGPILCLAGPPGVGKTSLAKSIAKSLGR-------KFVRISLGG 143 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHH-------HHSSSC---CSCEEEEESSSSSSHHHHHHHHHHHHTC-------EEEEECCCC
T ss_pred HHhccHHHHHHHHHHHHHHH-------HhcccC---CCCEEEEECCCCCCHHHHHHHHHHhcCC-------CeEEEEecc
Confidence 45999999998887643211 111211 4668999999999999999999999865 788888776
Q ss_pred ccc---------cccCCchhHHHHHHHHc--cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-----------
Q 013316 249 LVG---------EFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----------- 306 (445)
Q Consensus 249 l~~---------~~~g~~~~~~~~~~~~a--~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----------- 306 (445)
+.. .|+|.....+...|..+ .++||||||||.+.+.++. +.++.|++.|+.
T Consensus 144 ~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~-------~~~~~LL~~ld~~~~~~~~~~~~ 216 (543)
T 3m6a_A 144 VRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRG-------DPSSAMLEVLDPEQNSSFSDHYI 216 (543)
T ss_dssp --------------------CHHHHHHTTCSSSEEEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSS
T ss_pred cchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhcc-------CHHHHHHHHHhhhhcceeecccC
Confidence 432 46676777777788777 5689999999999875432 356778887763
Q ss_pred ------CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhccccccccccc-ccCCcccHHHH
Q 013316 307 ------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF-KLHSSCSMDAI 379 (445)
Q Consensus 307 ------~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~-~~~~~~~~~~l 379 (445)
.++++|++++... ..+|+|++|| ..|.|+.|+.+++.+|+..++.+.... ..+. .....++++++
T Consensus 217 ~~~~~~~~v~iI~ttN~~~-----~l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~--~~~~~~~~i~i~~~~l 288 (543)
T 3m6a_A 217 EETFDLSKVLFIATANNLA-----TIPGPLRDRM-EIINIAGYTEIEKLEIVKDHLLPKQIK--EHGLKKSNLQLRDQAI 288 (543)
T ss_dssp CCCCBCSSCEEEEECSSTT-----TSCHHHHHHE-EEEECCCCCHHHHHHHHHHTHHHHHHH--HTTCCGGGCEECHHHH
T ss_pred CeeecccceEEEeccCccc-----cCCHHHHhhc-ceeeeCCCCHHHHHHHHHHHHHHHHHH--HcCCCcccccCCHHHH
Confidence 3467777766543 2389999999 579999999999999999877432111 0111 11235677888
Q ss_pred HHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316 380 AALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 438 (445)
Q Consensus 380 ~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~ 438 (445)
..++..+. +++|+|+|++.++++++....+... .......|+.+|+.+++.
T Consensus 289 ~~l~~~~~-----~~~~vR~L~~~i~~~~~~aa~~~~~---~~~~~~~It~~~l~~~Lg 339 (543)
T 3m6a_A 289 LDIIRYYT-----REAGVRSLERQLAAICRKAAKAIVA---EERKRITVTEKNLQDFIG 339 (543)
T ss_dssp HHHHHHHC-----CCSSSHHHHHHHHHHHHHHHHHHHT---TCCSCCEECTTTTHHHHC
T ss_pred HHHHHhCC-----hhhchhHHHHHHHHHHHHHHHHHHh---cCCcceecCHHHHHHHhC
Confidence 87776443 3799999999999998877665533 223445789999888774
No 74
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.86 E-value=1.4e-21 Score=176.87 Aligned_cols=135 Identities=28% Similarity=0.341 Sum_probs=113.6
Q ss_pred ccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCc-----CCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcc
Q 013316 4 NQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLL-----NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE 77 (445)
Q Consensus 4 ~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~-----~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~ 77 (445)
|++++..+ .|.||||+||..|+.++++.|+.. +.++ +..+. .|+||||+|+..|+.+++++|+++ |++
T Consensus 27 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~ 100 (232)
T 2rfa_A 27 GCEVHQRGAMGETALHIAALYDNLEAAMVLMEA-APELVFEPMTSELY-EGQTALHIAVINQNVNLVRALLAR----GAS 100 (232)
T ss_dssp CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCCCCSTTT-TTCCHHHHHHHTTCHHHHHHHHHT----TCC
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CchhccccccccCC-CCcCHHHHHHHcCCHHHHHHHHhC----CCC
Confidence 77777765 699999999999999999988875 4443 44554 689999999999999999999985 777
Q ss_pred cccccC-------------CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHH----HHHHh
Q 013316 78 LEAQNM-------------YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLR----ELLLW 140 (445)
Q Consensus 78 v~~~d~-------------~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~----~~ll~ 140 (445)
++.++. .|.||||+|+..|+.+++++|+++|++++.+|..|+||| |+|+..++.+++ ++|++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L-~~A~~~~~~~~~~~i~~~Ll~ 179 (232)
T 2rfa_A 101 VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL-HILILQPNKTFACQMYNLLLS 179 (232)
T ss_dssp TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHTCSCHHHHHHHHHHHHH
T ss_pred CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHcCChHHHHHHHHHHHh
Confidence 777654 799999999999999999999999999999999999999 777788888877 88888
Q ss_pred hhhhH
Q 013316 141 HSEEQ 145 (445)
Q Consensus 141 ~~~~~ 145 (445)
++++.
T Consensus 180 ~g~~~ 184 (232)
T 2rfa_A 180 YDGGD 184 (232)
T ss_dssp TTCSC
T ss_pred cCCch
Confidence 88765
No 75
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.86 E-value=9.9e-22 Score=178.34 Aligned_cols=150 Identities=21% Similarity=0.253 Sum_probs=98.4
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~ 80 (445)
++|++++..+ .|.||||+|+..|+.++++.|+...+.+++..+. .|+||||+|+..++.+++++|++. |++++.
T Consensus 65 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~ 139 (237)
T 3b7b_A 65 KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATEYKHVDLVKLLLSK----GSDINI 139 (237)
T ss_dssp TTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTC
T ss_pred hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCC-CCCCHHHHHHHcCCHHHHHHHHHC----CCCCCc
Confidence 3455555444 4666666666666666666666554456666654 566777777766677777776663 666677
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET 157 (445)
Q Consensus 81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~ 157 (445)
++..|.||||+|+..|+.+++++|+++|++++.+|..|.||| ++|...++.+++++|++++++...++..+.++..
T Consensus 140 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~ 215 (237)
T 3b7b_A 140 RDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPL-HIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQ 215 (237)
T ss_dssp CCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHH
Confidence 777777777777777777777777777777777777777777 5666666777777777777666555544444433
No 76
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.86 E-value=7e-22 Score=167.34 Aligned_cols=137 Identities=25% Similarity=0.370 Sum_probs=118.4
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHH
Q 013316 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (445)
Q Consensus 13 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A 92 (445)
+.||||+||..|+.+.++.++...+.+++..+. .|+||||+ +..|+.+++++|+++ |++++.+|..|.||||+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~-~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A 75 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNR-FGKTALQV-MMFGSTAIALELLKQ----GASPNVQDTSGTSPVHDA 75 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCT-TSCCHHHH-SCTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCC-CCCcHHHH-HHcCCHHHHHHHHHC----CCCCCCcCCCCCCHHHHH
Confidence 468999999999999999999876668888886 79999999 899999999999985 888999999999999999
Q ss_pred HHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316 93 AKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET 157 (445)
Q Consensus 93 ~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~ 157 (445)
+..|+.+++++|+++|++++.+|..|+||| |+|+..++.+++++|++. ++...++..+.++..
T Consensus 76 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~ 138 (156)
T 1bd8_A 76 ARTGFLDTLKVLVEHGADVNVPDGTGALPI-HLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLE 138 (156)
T ss_dssp HHTTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHH
T ss_pred HHcCcHHHHHHHHHcCCCCCCcCCCCCcHH-HHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHH
Confidence 999999999999999999999999999999 778888899999999988 666665555544443
No 77
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.86 E-value=2.1e-21 Score=205.60 Aligned_cols=213 Identities=17% Similarity=0.246 Sum_probs=157.2
Q ss_pred HHHHH-hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316 165 ENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 243 (445)
Q Consensus 165 ~~~~~-~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~ 243 (445)
...+. .++|++.+++.+...+.. ...+......+..++||+||||||||++|+++|+.++. +|+.
T Consensus 453 ~~~l~~~v~g~~~~~~~l~~~i~~-------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~-------~~~~ 518 (758)
T 1r6b_X 453 GDRLKMLVFGQDKAIEALTEAIKM-------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-------ELLR 518 (758)
T ss_dssp HHHHTTTSCSCHHHHHHHHHHHHH-------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC-------EEEE
T ss_pred HHHHHhhccCHHHHHHHHHHHHHH-------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC-------CEEE
Confidence 33343 388999998888775432 23333333344558999999999999999999999854 8999
Q ss_pred eecccccc-----cccCC-------c-hhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc--
Q 013316 244 VQRTDLVG-----EFVGH-------T-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-- 308 (445)
Q Consensus 244 ~~~~~l~~-----~~~g~-------~-~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-- 308 (445)
++++.+.. .++|. . ...+...++.+.++||||||||++.+ ++++.|++.|+++.
T Consensus 519 i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~-----------~~~~~Ll~~le~~~~~ 587 (758)
T 1r6b_X 519 FDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-----------DVFNILLQVMDNGTLT 587 (758)
T ss_dssp EEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEE
T ss_pred EechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCH-----------HHHHHHHHHhcCcEEE
Confidence 99988643 23332 1 23456777888899999999999876 78999999998643
Q ss_pred -----------EEEEEecCchhHH-------------------HH-HhhCcccccccccceeCCCCCHHHHHHHHHHHHh
Q 013316 309 -----------VVVIFAGYSEPMK-------------------RV-IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMN 357 (445)
Q Consensus 309 -----------~~~i~a~~~~~~~-------------------~~-~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 357 (445)
+++|++++..... .+ -..+|+|++||+..|.|++|+.+++..|++.++.
T Consensus 588 ~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 588 DNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp ETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred cCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHH
Confidence 4577777652200 00 1347999999999999999999999999999998
Q ss_pred cccccccccccccCCcccHHHHHHHHHHHHHHhhhcccC--chhhHHHHHHHHHh
Q 013316 358 NQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN--GGLVDPMLVNAREN 410 (445)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n--~r~l~~~~~~~~~~ 410 (445)
+....+...++ ...++++++..+..+.| ++| +|.+++++++++..
T Consensus 668 ~~~~~~~~~~~--~~~~~~~a~~~l~~~~~------~~~~g~R~l~~~i~~~~~~ 714 (758)
T 1r6b_X 668 ELQVQLDQKGV--SLEVSQEARNWLAEKGY------DRAMGARPMARVIQDNLKK 714 (758)
T ss_dssp HHHHHHHHTTE--EEEECHHHHHHHHHHHC------BTTTBTTTHHHHHHHHHTH
T ss_pred HHHHHHHHCCc--EEEeCHHHHHHHHHhCC------CcCCCchHHHHHHHHHHHH
Confidence 76554443322 23678889998887777 445 99999999998775
No 78
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.86 E-value=1.1e-21 Score=183.65 Aligned_cols=162 Identities=15% Similarity=0.211 Sum_probs=117.0
Q ss_pred CCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEE
Q 013316 202 GARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILF 274 (445)
Q Consensus 202 ~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~ 274 (445)
+...|.++||+||||||||++|++||+.++. +|+.++++.+.+.|+|.++..++..|..+ .++|||
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~-------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~ 104 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGI-------NPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLF 104 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTC-------CCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 4566789999999999999999999999976 99999999999999999999999999888 679999
Q ss_pred EcCccccccCCCCCC--chhHHHHHHHHHhhccC---------------CcEEEEEecCchhHHHHHhhCccccc--ccc
Q 013316 275 VDEAYRLIPMQKADD--KDYGIEALEEIMSVMDG---------------GKVVVIFAGYSEPMKRVIASNEGFCR--RVT 335 (445)
Q Consensus 275 lDEid~l~~~~~~~~--~~~~~~~~~~ll~~~~~---------------~~~~~i~a~~~~~~~~~~~~~~~l~~--R~~ 335 (445)
|||||++.+++++.. ......+++.|++.+++ .++++|++|+..... +|++++ ||+
T Consensus 105 iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~l-----d~al~R~~R~d 179 (293)
T 3t15_A 105 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTL-----YAPLIRDGRME 179 (293)
T ss_dssp EECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC-------CHHHHHHHEE
T ss_pred EechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccC-----CHHHhCCCCCc
Confidence 999999998554221 22345677888888752 357788887654432 788886 998
Q ss_pred cceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHh
Q 013316 336 KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEK 390 (445)
Q Consensus 336 ~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 390 (445)
..+.+ |+.+++.+|++.++... +++.+.++.+...+.+.+
T Consensus 180 ~~i~~--P~~~~r~~Il~~~~~~~-------------~~~~~~l~~~~~~~~~~~ 219 (293)
T 3t15_A 180 KFYWA--PTREDRIGVCTGIFRTD-------------NVPAEDVVKIVDNFPGQS 219 (293)
T ss_dssp EEEEC--CCHHHHHHHHHHHHGGG-------------CCCHHHHHHHHHHSCSCC
T ss_pred eeEeC--cCHHHHHHHHHHhccCC-------------CCCHHHHHHHhCCCCccc
Confidence 88875 59999999999877642 345567777776665433
No 79
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.86 E-value=1.7e-21 Score=172.18 Aligned_cols=141 Identities=18% Similarity=0.249 Sum_probs=125.1
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 013316 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (445)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh 90 (445)
..+.||||+||..|+.+.++.++...+.+++..+. .|+||||+|+..|+.+++++|++. |++++.++..|.||||
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~l~ 77 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDT-EGNTPLNIAVHNNDIEIAKALIDR----GADINLQNSISDSPYL 77 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCCCCCCCCCHHH
Confidence 45789999999999999999999888879999987 799999999999999999999995 8899999999999999
Q ss_pred HHHHcCCHHHHHHHH-hcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhh-hhHHhhhhhhhhhhh
Q 013316 91 MAAKNGCNEAAKLLL-AHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS-EEQRKRRALEACSET 157 (445)
Q Consensus 91 ~A~~~g~~~~~~~Ll-~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~-~~~~~~~~~~~~~~~ 157 (445)
+|+..|+.+++++|+ ..+++++.++..|.||| |+|+..++.+++++|++.+ .+...++..+.++..
T Consensus 78 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~ 145 (201)
T 3hra_A 78 YAGAQGRTEILAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALI 145 (201)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHH
T ss_pred HHHHcCCHHHHHHHHhccCcccccccCCCCcHH-HHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHH
Confidence 999999999999999 67889999999999999 7888889999999999998 666655554444443
No 80
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.86 E-value=8.1e-22 Score=182.72 Aligned_cols=128 Identities=25% Similarity=0.338 Sum_probs=114.8
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~ 80 (445)
+.|++++... .|.||+|+|+..++.++++.|+. .++++|..+. .|+||||+||..|+.+++++|+++ |+++|.
T Consensus 107 ~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~n~~d~-~g~TpL~~A~~~g~~~~v~~Ll~~----gadvn~ 180 (269)
T 4b93_B 107 KHGANAGARNADQAVPLHLACQQGHFQVVKCLLD-SNAKPNKKDL-SGNTPLIYACSGGHHELVALLLQH----GASINA 180 (269)
T ss_dssp HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCT-TCCCHHHHHHHTTCGGGHHHHHHT----TCCTTC
T ss_pred hcCCCcCccCCCCCCccccccccChHHHHHHHHH-CCCCCCCCCC-CCCCHHHHHHHCCCHHHHHHHHHC----CCCCCc
Confidence 4677787766 69999999999999999988775 6899999987 799999999999999999999995 899999
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHH
Q 013316 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138 (445)
Q Consensus 81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~l 138 (445)
++..|.||||+|+..|+.+++++|+++|++++.+|.+|+||| ++|+..+ +++++|
T Consensus 181 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL-~~A~~~~--~i~~lL 235 (269)
T 4b93_B 181 SNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAV-DCAEQNS--KIMELL 235 (269)
T ss_dssp BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSG-GGSCTTC--HHHHHT
T ss_pred cccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH-HHHHhCC--cHHHHH
Confidence 999999999999999999999999999999999999999999 6666544 455555
No 81
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.86 E-value=1e-20 Score=180.27 Aligned_cols=183 Identities=20% Similarity=0.250 Sum_probs=139.2
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|.+..++.+.+++...... ...+.+++|+||||||||++|+++|+.++. +|+.+++
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~-----------~~~~~~vll~G~~GtGKT~la~~i~~~~~~-------~~~~~~~ 71 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKAR-----------KEPLEHLLLFGPPGLGKTTLAHVIAHELGV-------NLRVTSG 71 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHH-----------CSCCCCCEEECCTTCCCHHHHHHHHHHHTC-------CEEEECT
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHcc-----------CCCCCcEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEec
Confidence 3567999999999988876544211 235678999999999999999999998865 8888888
Q ss_pred ccccccccCCchhHHHHHHHH--ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-----------------
Q 013316 247 TDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----------------- 307 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~--a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~----------------- 307 (445)
+.+. ....+...|.. +.+++|||||||.+.+ ..++.|+..++..
T Consensus 72 ~~~~------~~~~l~~~l~~~~~~~~~l~lDEi~~l~~-----------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~ 134 (324)
T 1hqc_A 72 PAIE------KPGDLAAILANSLEEGDILFIDEIHRLSR-----------QAEEHLYPAMEDFVMDIVIGQGPAARTIRL 134 (324)
T ss_dssp TTCC------SHHHHHHHHTTTCCTTCEEEETTTTSCCH-----------HHHHHHHHHHHHSEEEECCSSSSSCCCEEE
T ss_pred cccC------ChHHHHHHHHHhccCCCEEEEECCccccc-----------chHHHHHHHHHhhhhHHhcccccccccccc
Confidence 7653 23455566665 5789999999998875 5566677766643
Q ss_pred ---cEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHH
Q 013316 308 ---KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 384 (445)
Q Consensus 308 ---~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 384 (445)
.+++|++++.... .+++|++||+..+.|++|+.+|+.+++..++.+.. ..++++++..+.
T Consensus 135 ~~~~~~~i~~t~~~~~-----~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~-----------~~~~~~~~~~l~- 197 (324)
T 1hqc_A 135 ELPRFTLIGATTRPGL-----ITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG-----------VRITEEAALEIG- 197 (324)
T ss_dssp ECCCCEEEEEESCCSS-----CSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT-----------CCCCHHHHHHHH-
T ss_pred CCCCEEEEEeCCCccc-----CCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHH-
Confidence 3567777766532 37889999988999999999999999999887541 245667776554
Q ss_pred HHHHHhhhcccCchhhHHHHHHH
Q 013316 385 KETTEKQRREMNGGLVDPMLVNA 407 (445)
Q Consensus 385 ~~~~~~~~~~~n~r~l~~~~~~~ 407 (445)
.++ +||.|.+.++++++
T Consensus 198 ~~~------~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 198 RRS------RGTMRVAKRLFRRV 214 (324)
T ss_dssp HHS------CSCHHHHHHHHHHH
T ss_pred HHc------cCCHHHHHHHHHHH
Confidence 444 78999999999887
No 82
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.86 E-value=1.5e-21 Score=164.94 Aligned_cols=130 Identities=28% Similarity=0.372 Sum_probs=119.7
Q ss_pred CCccCccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316 2 QKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (445)
Q Consensus 2 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~ 81 (445)
+.|++.+....|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++ |++++.+
T Consensus 23 ~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~ 96 (153)
T 1awc_B 23 ANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLR-AGVSRDARTK-VDRTPLHMAASEGHANIVEVLLKH----GADVNAK 96 (153)
T ss_dssp HHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHTT----TCCTTCC
T ss_pred HcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCC-CCCCHHHHHHHcChHHHHHHHHHc----CCCCCCC
Confidence 356677766789999999999999999998885 6888999987 799999999999999999999995 8899999
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHH
Q 013316 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELL 138 (445)
Q Consensus 82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~l 138 (445)
|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+ ++|...++.+++++|
T Consensus 97 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 97 DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF-DISIDNGNEDLAEIL 152 (153)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH-HHHHHcCCHHHHHHh
Confidence 99999999999999999999999999999999999999999 788888999999887
No 83
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.85 E-value=9.3e-22 Score=180.88 Aligned_cols=136 Identities=24% Similarity=0.288 Sum_probs=120.7
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCC------------CCChHHHHHHhCCcHHHHHHhhcCCCCCCccc
Q 013316 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPV------------MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL 78 (445)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~------------~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v 78 (445)
..|.||||+||..|+.++++.|+. .+++++..+.. .|+||||+|+..|+.+++++|++.+. .|+++
T Consensus 88 ~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~-~ga~~ 165 (256)
T 2etb_A 88 YQGHSALHIAIEKRSLQCVKLLVE-NGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH-QPASL 165 (256)
T ss_dssp TTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS-CCCCT
T ss_pred ccCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc-cCCCc
Confidence 469999999999999999998876 58899988862 19999999999999999999999210 18899
Q ss_pred ccccCCCCcHHHHHHH--cCCHH-------HHHHHHhcCCCC-------cccccCCCChhhhhhcCCCChHHHHHHHhhh
Q 013316 79 EAQNMYGETPLHMAAK--NGCNE-------AAKLLLAHGAFI-------EAKANEGKTPLDHLSNGPGSAKLRELLLWHS 142 (445)
Q Consensus 79 ~~~d~~g~tpLh~A~~--~g~~~-------~~~~Ll~~ga~~-------~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~ 142 (445)
+.+|..|+||||+|+. .++.+ ++++|+++|+++ +.+|..|+||| ++|+..++.+++++|++++
T Consensus 166 n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~g 244 (256)
T 2etb_A 166 EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPL-KLAAKEGKIEIFRHILQRE 244 (256)
T ss_dssp TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHH-HHHHHTTCHHHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHH-HHHHHhCCHHHHHHHHhCC
Confidence 9999999999999998 88888 999999999999 99999999999 8888899999999999999
Q ss_pred hhHHhhh
Q 013316 143 EEQRKRR 149 (445)
Q Consensus 143 ~~~~~~~ 149 (445)
.+.....
T Consensus 245 ~~~~~~~ 251 (256)
T 2etb_A 245 FSGAAAH 251 (256)
T ss_dssp HHHHHHH
T ss_pred CCCCCcc
Confidence 8765443
No 84
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.85 E-value=1.6e-21 Score=176.37 Aligned_cols=142 Identities=28% Similarity=0.373 Sum_probs=127.2
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccc-----ccccCCCC
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL-----EAQNMYGE 86 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v-----~~~d~~g~ 86 (445)
.|.||||+||..|+.++++.|+...+.+++..+. .|+||||+|+..|+.+++++|++. |+++ +.+|..|.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~~~~~~~~g~ 76 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGA-MGETALHIAALYDNLEAAMVLMEA----APELVFEPMTSELYEGQ 76 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHH----CGGGGGCCCCSTTTTTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCC-CCCCHHHHHHHcCCHHHHHHHHHc----CchhccccccccCCCCc
Confidence 4789999999999999999999877999999987 799999999999999999999995 6665 66788999
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCCccccc-------------CCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhh
Q 013316 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-------------EGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEA 153 (445)
Q Consensus 87 tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~-------------~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~ 153 (445)
||||+|+..|+.+++++|+++|++++.++. .|.||| |+|+..++.+++++|++++++...++..+.
T Consensus 77 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~ 155 (232)
T 2rfa_A 77 TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL-SFAACVGSEEIVRLLIEHGADIRAQDSLGN 155 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHH-HHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence 999999999999999999999999998876 799999 888888999999999999998887776666
Q ss_pred hhhhHH
Q 013316 154 CSETKA 159 (445)
Q Consensus 154 ~~~~~a 159 (445)
++...+
T Consensus 156 t~L~~A 161 (232)
T 2rfa_A 156 TVLHIL 161 (232)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 665443
No 85
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.85 E-value=1.1e-21 Score=184.44 Aligned_cols=151 Identities=22% Similarity=0.257 Sum_probs=129.2
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~ 80 (445)
++|++++..+ .|.||||+||..|+.++++.|+. .|++++..+. .|+||||+|+..|+.+++++|+++ |++++.
T Consensus 61 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~----g~~~~~ 134 (299)
T 1s70_B 61 ERGADINYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQPDN-EGWIPLHAAASCGYLDIAEYLISQ----GAHVGA 134 (299)
T ss_dssp HHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----TCCTTC
T ss_pred HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhC----CCCCCC
Confidence 4577777765 69999999999999999998875 6889999987 799999999999999999999996 555554
Q ss_pred cc------------------------------------------------------------CCCCcHHHHHHHcCCHHH
Q 013316 81 QN------------------------------------------------------------MYGETPLHMAAKNGCNEA 100 (445)
Q Consensus 81 ~d------------------------------------------------------------~~g~tpLh~A~~~g~~~~ 100 (445)
.| ..|.||||+|+..|+.++
T Consensus 135 ~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~ 214 (299)
T 1s70_B 135 VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEV 214 (299)
T ss_dssp CCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHH
T ss_pred cCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHH
Confidence 33 457789999999999999
Q ss_pred HHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316 101 AKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA 159 (445)
Q Consensus 101 ~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a 159 (445)
+++|+++|++++.+|..|+||| |+|+..++.+++++|+++|+++..++..+.++...+
T Consensus 215 v~~Ll~~g~d~~~~d~~g~tpL-~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A 272 (299)
T 1s70_B 215 LKLLIQARYDVNIKDYDGWTPL-HAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272 (299)
T ss_dssp HHHHHTTTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred HHHHHHcCCCCCCcCCCCCcHH-HHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 9999999999999999999999 788888999999999999998887776666665443
No 86
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.85 E-value=1.5e-20 Score=201.04 Aligned_cols=215 Identities=17% Similarity=0.278 Sum_probs=156.3
Q ss_pred HhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 013316 169 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 248 (445)
Q Consensus 169 ~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~ 248 (445)
++++|++++++.+...+.... .+......+..+++|+||||||||++|++||+.+...+ .+|+.++|+.
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~-------~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~----~~~i~i~~~~ 626 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRAR-------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE----EAMIRIDMTE 626 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHG-------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG----GGEEEECTTT
T ss_pred cccCCcHHHHHHHHHHHHHHh-------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC----CcEEEEechh
Confidence 568999999988888665432 12222222335899999999999999999999995422 2899999987
Q ss_pred cccc------------ccCCch-hHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC--------
Q 013316 249 LVGE------------FVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------- 307 (445)
Q Consensus 249 l~~~------------~~g~~~-~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------- 307 (445)
+... |+|+.. ..+...+....++||||||||.+.+ ++++.|++.|+++
T Consensus 627 ~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~g~ 695 (854)
T 1qvr_A 627 YMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHP-----------DVFNILLQILDDGRLTDSHGR 695 (854)
T ss_dssp CCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCH-----------HHHHHHHHHHTTTEECCSSSC
T ss_pred ccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCH-----------HHHHHHHHHhccCceECCCCC
Confidence 5432 335543 4566777778889999999998876 8899999999875
Q ss_pred -----cEEEEEecCchh---------------HHHHH------hhCcccccccccceeCCCCCHHHHHHHHHHHHhcccc
Q 013316 308 -----KVVVIFAGYSEP---------------MKRVI------ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTE 361 (445)
Q Consensus 308 -----~~~~i~a~~~~~---------------~~~~~------~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~ 361 (445)
+.++|++++... ....+ ...|+|++||+..+.|++|+.+++..|+++++.+...
T Consensus 696 ~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~ 775 (854)
T 1qvr_A 696 TVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRA 775 (854)
T ss_dssp CEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHH
T ss_pred EeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 456777777521 11111 2368899999999999999999999999999987765
Q ss_pred cccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhh
Q 013316 362 DSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 411 (445)
Q Consensus 362 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~ 411 (445)
++...++ ...++++++..+..+.| ..++|+|++++++++++...
T Consensus 776 ~~~~~~~--~~~~~~~a~~~L~~~~~----~~~gn~R~L~~~i~~~~~~~ 819 (854)
T 1qvr_A 776 RLAEKRI--SLELTEAAKDFLAERGY----DPVFGARPLRRVIQRELETP 819 (854)
T ss_dssp HHHTTTC--EEEECHHHHHHHHHHHC----BTTTBTSTHHHHHHHHTHHH
T ss_pred HHHhCCc--eEEECHHHHHHHHHcCC----CCCCChHHHHHHHHHHHHHH
Confidence 5443322 23678889988887766 23799999999999985543
No 87
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.85 E-value=1.9e-21 Score=175.29 Aligned_cols=139 Identities=23% Similarity=0.248 Sum_probs=80.2
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhC-CCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLREN-PSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh 90 (445)
.|.||||+|+..|+.++++.|+... +.+++..+. .|+||||+|+..|+.+++++|+++ |++++.+|..|.||||
T Consensus 71 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~ 145 (228)
T 2dzn_A 71 SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVSQFLIEN----GASVRIKDKFNQIPLH 145 (228)
T ss_dssp TSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHT----TCCSCCCCTTSCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCc-CCCCHHHHHHHcCCHhHHHHHHHc----CCCccccCCCCCCHHH
Confidence 4556666666666666665555331 145555554 466666666666666666666653 5556666666666666
Q ss_pred HHHHcCCHHHHHHHHhcC-CCCcccccCCCChhhhhhcCCCChHHHHHHH-hhhhhHHhhhhhhhhhh
Q 013316 91 MAAKNGCNEAAKLLLAHG-AFIEAKANEGKTPLDHLSNGPGSAKLRELLL-WHSEEQRKRRALEACSE 156 (445)
Q Consensus 91 ~A~~~g~~~~~~~Ll~~g-a~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll-~~~~~~~~~~~~~~~~~ 156 (445)
+|+..|+.+++++|++.| ++++.+|..|+||| |+|...++.+++++|+ +.|+++..++..+.++.
T Consensus 146 ~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L-~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l 212 (228)
T 2dzn_A 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL-FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAE 212 (228)
T ss_dssp HHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHH-HHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGG
T ss_pred HHHHcCCHHHHHHHHhcCcccccCcCCCCCCHH-HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHH
Confidence 666666666666666666 66666666666666 5555555666666666 55555555444444443
No 88
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.85 E-value=4.1e-21 Score=162.59 Aligned_cols=128 Identities=20% Similarity=0.295 Sum_probs=117.2
Q ss_pred cCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccC
Q 013316 5 QDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM 83 (445)
Q Consensus 5 ~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~ 83 (445)
.+++..+ .|.||||+ |..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++ |++++.+|.
T Consensus 27 ~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~ 99 (156)
T 1bd8_A 27 VHPDALNRFGKTALQV-MMFGSTAIALELLK-QGASPNVQDT-SGTSPVHDAARTGFLDTLKVLVEH----GADVNVPDG 99 (156)
T ss_dssp CCTTCCCTTSCCHHHH-SCTTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCSCCCCT
T ss_pred cCccccCCCCCcHHHH-HHcCCHHHHHHHHH-CCCCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHHc----CCCCCCcCC
Confidence 3555555 69999999 99999999998885 5889999987 799999999999999999999995 889999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhh
Q 013316 84 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWH 141 (445)
Q Consensus 84 ~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~ 141 (445)
.|.||||+|+..|+.+++++|++. ++++.+|..|.||| ++|...++.+++++|+++
T Consensus 100 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l-~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 100 TGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPL-ELALQRGAQDLVDILQGH 155 (156)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHH-HHHHHSCCHHHHHHHHTT
T ss_pred CCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHH-HHHHHcCcHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999 788889999999999764
No 89
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.85 E-value=1.6e-20 Score=182.21 Aligned_cols=215 Identities=17% Similarity=0.203 Sum_probs=148.3
Q ss_pred HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 013316 168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 247 (445)
Q Consensus 168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~ 247 (445)
|++++|++..++.+..+...+. .+..++.++||+||||||||++|+++++.+.. ..+|+.+++.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~-----------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~-----~~~~~~~~~~ 106 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIR-----------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP-----DTPFTAIAGS 106 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHH-----------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS-----SCCEEEEEGG
T ss_pred hhhccChHHHHHHHHHHHHHHH-----------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc-----cCCcccccch
Confidence 5679999999888776554442 12334578999999999999999999999863 2267777765
Q ss_pred ccccccc-------------------------------------------------CCchhHHHHHHHHcc---------
Q 013316 248 DLVGEFV-------------------------------------------------GHTGPKTRRRIKEAE--------- 269 (445)
Q Consensus 248 ~l~~~~~-------------------------------------------------g~~~~~~~~~~~~a~--------- 269 (445)
.+.+.+. |.....+++.+..+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~ 186 (368)
T 3uk6_A 107 EIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKA 186 (368)
T ss_dssp GGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC-
T ss_pred hhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccc
Confidence 5332221 222344455443321
Q ss_pred ---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC--cEEEEEec---------CchhHHHHHhhCcccccccc
Q 013316 270 ---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--KVVVIFAG---------YSEPMKRVIASNEGFCRRVT 335 (445)
Q Consensus 270 ---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~i~a~---------~~~~~~~~~~~~~~l~~R~~ 335 (445)
++||||||||.+.+ +.++.|++.++.. .+++++++ +.+.. ...+|+|++||.
T Consensus 187 ~~~~~vl~IDEi~~l~~-----------~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~---~~l~~~l~sR~~ 252 (368)
T 3uk6_A 187 EIIPGVLFIDEVHMLDI-----------ESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSP---HGIPIDLLDRLL 252 (368)
T ss_dssp --CBCEEEEESGGGSBH-----------HHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEE---TTCCHHHHTTEE
T ss_pred cccCceEEEhhccccCh-----------HHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCc---ccCCHHHHhhcc
Confidence 36999999999875 7788888888763 34433332 11111 223789999995
Q ss_pred cceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhh
Q 013316 336 KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRL 415 (445)
Q Consensus 336 ~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~ 415 (445)
. +.|++|+.+++.+|++.++.+. ...++++++..+....+ +||.|.+.++++++......+
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~-----------~~~~~~~~l~~l~~~~~------~G~~r~~~~ll~~a~~~A~~~- 313 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEE-----------DVEMSEDAYTVLTRIGL------ETSLRYAIQLITAASLVCRKR- 313 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHT-----------TCCBCHHHHHHHHHHHH------HSCHHHHHHHHHHHHHHHHHT-
T ss_pred E-EEecCCCHHHHHHHHHHHHHHc-----------CCCCCHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHh-
Confidence 5 8999999999999999988763 23467778776665554 388999999999985443221
Q ss_pred ccCCCChhhhhhccHHHHHHHHHH
Q 013316 416 SFDCLDTDELRTITLEDLEAGLKL 439 (445)
Q Consensus 416 ~~~~~~~~~~~~i~~~d~~~a~~~ 439 (445)
+...|+.+|+.++++.
T Consensus 314 --------~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 314 --------KGTEVQVDDIKRVYSL 329 (368)
T ss_dssp --------TCSSBCHHHHHHHHHH
T ss_pred --------CCCCCCHHHHHHHHHH
Confidence 2247999999998875
No 90
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.85 E-value=2.1e-21 Score=176.54 Aligned_cols=147 Identities=22% Similarity=0.285 Sum_probs=83.6
Q ss_pred CccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316 3 KNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (445)
Q Consensus 3 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~ 81 (445)
.|++++..+ .|.||||+|+..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|++.+...+.+++..
T Consensus 35 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 112 (241)
T 1k1a_A 35 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT-AGASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR 112 (241)
T ss_dssp TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCC
T ss_pred cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccc
Confidence 344555444 46666666666666666665553 4556666554 56666666666666666666665422222255555
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccc-cCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhh
Q 013316 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-NEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALE 152 (445)
Q Consensus 82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~-~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~ 152 (445)
+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||| |+|+..++.+++++|++++++...++..+
T Consensus 113 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 183 (241)
T 1k1a_A 113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL-IHAVENNSLSMVQLLLQHGANVNAQMYSG 183 (241)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTCBCTTS
T ss_pred CcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHH-HHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence 5556666666666666666666666666665555 5556666 45555555566666665555544443333
No 91
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.85 E-value=1.7e-21 Score=165.94 Aligned_cols=136 Identities=20% Similarity=0.290 Sum_probs=123.9
Q ss_pred CCCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccc
Q 013316 1 MQKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79 (445)
Q Consensus 1 l~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~ 79 (445)
++.|++++..+ .|.||||+|+. |+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++ |++++
T Consensus 25 l~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~ 97 (162)
T 1ihb_A 25 LQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLL-RGANPDLKDR-TGFAVIHDAARAGFLDTLQTLLEF----QADVN 97 (162)
T ss_dssp TTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----TCCTT
T ss_pred HhCCCCccccCccCccHHHHHHc-CcHHHHHHHHH-cCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCC
Confidence 46788888776 69999999999 99999998886 5889999987 799999999999999999999995 88999
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHhcCCC-CcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316 80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAF-IEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144 (445)
Q Consensus 80 ~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~-~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~ 144 (445)
.+|..|.||||+|+..|+.+++++|+++|++ ++.++..|.||| ++|...++.+++++|+++|++
T Consensus 98 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l-~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC-DLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTC--
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHH-HHHHHcCCHHHHHHHHHhCCC
Confidence 9999999999999999999999999999998 599999999999 888889999999999998874
No 92
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.85 E-value=4.6e-21 Score=172.24 Aligned_cols=150 Identities=23% Similarity=0.319 Sum_probs=135.1
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~ 80 (445)
+.|++++..+ .|.||||+|+..|+.++++.|+...+.+++..+. .|+||||+|+..++.+++++|+++ |++++.
T Consensus 46 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~ 120 (223)
T 2f8y_A 46 EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH-DGTTPLILAARLAVEGMLEDLINS----HADVNA 120 (223)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHT----TCCTTC
T ss_pred HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC-CCCcHHHHHHHhCcHHHHHHHHHc----CCCCcC
Confidence 4677888776 6999999999999999999999877668888886 799999999999999999999995 889999
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET 157 (445)
Q Consensus 81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~ 157 (445)
+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||| ++|+..++.+++++|+++++++..++..+.++..
T Consensus 121 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~ 196 (223)
T 2f8y_A 121 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPL-FLAAREGSYETAKVLLDHFANRDITDHMDRLPRD 196 (223)
T ss_dssp BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHH-HHHHHcCCHHHHHHHHHcCCCCccccccCCCHHH
Confidence 999999999999999999999999999999999999999999 7888889999999999999987776655544443
No 93
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.85 E-value=1e-21 Score=180.60 Aligned_cols=150 Identities=19% Similarity=0.130 Sum_probs=126.1
Q ss_pred CccCccC-----CCCCchHhHHHHHc---CCHHHHHHHHhhCCCCcCC-----------CCCCCCChHHHHHHhCCcHHH
Q 013316 3 KNQDRRS-----RSAKPATIHGCAQS---GDLLAFQRLLRENPSLLNE-----------RNPVMAQTPLHVSAGYNKAEI 63 (445)
Q Consensus 3 ~~~~~~~-----~~~~~t~L~~A~~~---g~~~~v~~ll~~~~~~~~~-----------~~~~~g~tpLh~A~~~g~~~i 63 (445)
.|++.+. ...|.||||+||.. |+.++++.|+.. +.+++. .+. .|+||||+|+..|+.++
T Consensus 28 ~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~ 105 (256)
T 2etb_A 28 NSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI-DKDSGNPKPLVNAQCTDEFY-QGHSALHIAIEKRSLQC 105 (256)
T ss_dssp HTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH-HHHTTCSSCGGGCCCCSTTT-TTCCHHHHHHHTTCHHH
T ss_pred cCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc-CCcccchhhhcccccccccc-cCCCHHHHHHHcCCHHH
Confidence 4667775 45799999999999 999999988865 444332 223 69999999999999999
Q ss_pred HHHhhcCCCCCCcccccccCC-------------CCcHHHHHHHcCCHHHHHHHHh---cCCCCcccccCCCChhhhhhc
Q 013316 64 VKSLLEWPGNDKVELEAQNMY-------------GETPLHMAAKNGCNEAAKLLLA---HGAFIEAKANEGKTPLDHLSN 127 (445)
Q Consensus 64 v~~Ll~~~~~~g~~v~~~d~~-------------g~tpLh~A~~~g~~~~~~~Ll~---~ga~~~~~~~~g~tpl~~~a~ 127 (445)
+++|+++ |++++.++.. |.||||+|+..|+.+++++|++ +|++++.+|..|+||| |+|+
T Consensus 106 v~~Ll~~----ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpL-h~A~ 180 (256)
T 2etb_A 106 VKLLVEN----GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL-HALV 180 (256)
T ss_dssp HHHHHHT----TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHH-HHHH
T ss_pred HHHHHHc----CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHH-HHHH
Confidence 9999995 8899988876 9999999999999999999999 9999999999999999 5565
Q ss_pred C--CCChH-------HHHHHHhhhhhH-------HhhhhhhhhhhhHH
Q 013316 128 G--PGSAK-------LRELLLWHSEEQ-------RKRRALEACSETKA 159 (445)
Q Consensus 128 ~--~~~~~-------i~~~ll~~~~~~-------~~~~~~~~~~~~~a 159 (445)
. .++.+ ++++|++++++. ..++..+.++...+
T Consensus 181 ~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A 228 (256)
T 2etb_A 181 MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA 228 (256)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHH
T ss_pred HcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHH
Confidence 5 67777 999999999998 66666665655443
No 94
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.85 E-value=1.9e-21 Score=178.62 Aligned_cols=134 Identities=21% Similarity=0.310 Sum_probs=95.8
Q ss_pred HHHHHcCCHHHHHHHHhhCCCCcCCC-CCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcC
Q 013316 18 HGCAQSGDLLAFQRLLRENPSLLNER-NPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG 96 (445)
Q Consensus 18 ~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g 96 (445)
..+...++.++++.|+.. +.+++.. +. .|+||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|
T Consensus 28 ~~~~~~~~~~~v~~Ll~~-g~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~ 101 (253)
T 1yyh_A 28 NSEEEEDAPAVISDFIYQ-GASLHNQTDR-TGETALHLAARYSRSDAAKRLLEA----SADANIQDNMGRTPLHAAVSAD 101 (253)
T ss_dssp -------------------------CCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHHT
T ss_pred chhhcCCChHHHHHHHHc-cCCcccccCC-CCCcHHHHHHHcCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHHcC
Confidence 447778899999988865 5666544 54 799999999999999999999995 8899999999999999999999
Q ss_pred CHHHHHHHHhcCC-CCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhH
Q 013316 97 CNEAAKLLLAHGA-FIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETK 158 (445)
Q Consensus 97 ~~~~~~~Ll~~ga-~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~ 158 (445)
+.+++++|++.|+ +++.++..|.||| ++|+..++.+++++|++.+.+...++..+.++...
T Consensus 102 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~ 163 (253)
T 1yyh_A 102 AQGVFQILIRNRATDLDARMHDGTTPL-ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 163 (253)
T ss_dssp CHHHHHHHHHSTTSCTTCCCTTCCCHH-HHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHH
T ss_pred CHHHHHHHHHcCCCCccccCCCCCcHH-HHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 9999999999887 8899999999999 77778888999999999988877665555555443
No 95
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=2.1e-21 Score=174.68 Aligned_cols=133 Identities=26% Similarity=0.293 Sum_probs=111.5
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~ 91 (445)
.|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+||..|+.+++++|++. .|++++.+|..|.||||+
T Consensus 72 ~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~d~~g~tpL~~ 146 (222)
T 3ehr_A 72 SIDNPLHEAAKRGNLSWLRECLD-NRVGVNGLDK-AGSTALYWACHGGHKDIVEMLFTQ---PNIELNQQNKLGDTALHA 146 (222)
T ss_dssp EESCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHTTS---TTCCCCCCCTTSCCHHHH
T ss_pred ccccccccccccCcHHHHHHHHh-CCCCccccCC-CCCCHHHHHHHcCCHHHHHHHHcC---CCCCccccCCCCCCHHHH
Confidence 46899999999999999998886 6789999987 799999999999999999999985 388999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhh
Q 013316 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRA 150 (445)
Q Consensus 92 A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~ 150 (445)
|+..|+.+++++|+++|++++.+|..|.||| ++|...+..++++.++..++.....+.
T Consensus 147 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~~~~~~~~l~~l~~~~~~~~~~~~ 204 (222)
T 3ehr_A 147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAF-DMATNAACASLLKKKQGTDAVRTLSNA 204 (222)
T ss_dssp HHHHTCHHHHHHHHHHTCCSCCCCTTSCCHH-HHCCSHHHHHHHC--------------
T ss_pred HHHcCCHHHHHHHHHcCCCCccccCCCCCHH-HHhcchhHHHHHHHHhccchhhhccch
Confidence 9999999999999999999999999999999 788888889999998888877655543
No 96
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.85 E-value=2e-21 Score=180.89 Aligned_cols=132 Identities=24% Similarity=0.245 Sum_probs=99.7
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCC---cCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCc
Q 013316 11 SAKPATIHGCAQSGDLLAFQRLLRENPSL---LNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (445)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~---~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~t 87 (445)
..|.||||+||..|+.++++.|+.. +.+ ++..+. .|+||||+|+..|+.+++++|+++ |++++.+|..|.|
T Consensus 7 ~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~t 80 (282)
T 1oy3_D 7 EDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQND-LGQTALHLAAILGEASTVEKLYAA----GAGVLVAERGGHT 80 (282)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----TCCSSCCCTTSCC
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhc-CCCcccccccCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCCCCCCCCC
Confidence 4677888888888888888777754 333 666665 688888888888888888888874 7778888888888
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCC-----------------------------------------------CcccccCCCC
Q 013316 88 PLHMAAKNGCNEAAKLLLAHGAF-----------------------------------------------IEAKANEGKT 120 (445)
Q Consensus 88 pLh~A~~~g~~~~~~~Ll~~ga~-----------------------------------------------~~~~~~~g~t 120 (445)
|||+|+..|+.+++++|+++|++ ++.++..|.|
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 160 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence 88888888888888888877654 5667777888
Q ss_pred hhhhhhcCCCChHHHHHHHhhhhhHHhhh
Q 013316 121 PLDHLSNGPGSAKLRELLLWHSEEQRKRR 149 (445)
Q Consensus 121 pl~~~a~~~~~~~i~~~ll~~~~~~~~~~ 149 (445)
|| |+|+..++.+++++|++++++.....
T Consensus 161 ~L-~~A~~~g~~~~v~~Ll~~g~~~~~~~ 188 (282)
T 1oy3_D 161 PL-HVAVIHKDAEMVRLLRDAGADLNKPE 188 (282)
T ss_dssp HH-HHHHHTTCHHHHHHHHHHTCCTTCCC
T ss_pred HH-HHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 88 66777777888888888777665544
No 97
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.85 E-value=2.6e-21 Score=178.55 Aligned_cols=137 Identities=21% Similarity=0.219 Sum_probs=94.7
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~ 80 (445)
+.|++++..+ .|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|++. |++++.
T Consensus 24 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~ 97 (261)
T 2xai_A 24 SQGWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGVTA-DWHTPLFNACVSGSWDCVNLLLQH----GASVQP 97 (261)
T ss_dssp HTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----TCCSSC
T ss_pred HCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHC----CCCCCC
Confidence 3566666655 57777777777777777776664 4677777775 677777777777777777777774 555553
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHH
Q 013316 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 146 (445)
Q Consensus 81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~ 146 (445)
+..|.||||+|+..|+.+++++|+++|++++.+|..|.||| |+|+..++.+++++|++++++.+
T Consensus 98 -~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~ 161 (261)
T 2xai_A 98 -ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPL-YLACENQQRACVKKLLESGADVN 161 (261)
T ss_dssp -SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHH-HHHHHTTCHHHHHHHHHHTCCTT
T ss_pred -CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHH-HHHHHhCCHHHHHHHHHcCCCCC
Confidence 33466777777777777777777777777777777777777 55666666777777776666554
No 98
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.84 E-value=3.5e-21 Score=177.36 Aligned_cols=134 Identities=19% Similarity=0.213 Sum_probs=119.2
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCC-------------CCCChHHHHHHhCCcHHHHHHhhcCCCCCCccc
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNP-------------VMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL 78 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-------------~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v 78 (445)
.|+||||+||..|+.++++.|+. .+++++..+. ..|+||||+|+..|+.+++++|++.+. .|+++
T Consensus 92 ~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~ga~~ 169 (260)
T 3jxi_A 92 RGQTALHIAIERRCKHYVELLVE-KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH-KQADL 169 (260)
T ss_dssp ESBCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS-CCCCT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh-CCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc-cCCCC
Confidence 69999999999999999998886 6899998872 269999999999999999999999210 17899
Q ss_pred ccccCCCCcHHHHHHHcCC---------HHHHHHHHhcCCCC-------cccccCCCChhhhhhcCCCChHHHHHHHhhh
Q 013316 79 EAQNMYGETPLHMAAKNGC---------NEAAKLLLAHGAFI-------EAKANEGKTPLDHLSNGPGSAKLRELLLWHS 142 (445)
Q Consensus 79 ~~~d~~g~tpLh~A~~~g~---------~~~~~~Ll~~ga~~-------~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~ 142 (445)
+.+|..|+||||+|+..++ .+++++|+++|+++ +.+|..|+||| ++|+..++.+++++|++++
T Consensus 170 ~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 170 RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL-MMAAKTGKIGIFQHIIRRE 248 (260)
T ss_dssp TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH-HHHHHTTCHHHHHHHHHHH
T ss_pred cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHH-HHHHHcCCHHHHHHHHHhC
Confidence 9999999999999998887 79999999999999 78999999999 8888899999999999999
Q ss_pred hhHHhh
Q 013316 143 EEQRKR 148 (445)
Q Consensus 143 ~~~~~~ 148 (445)
.++...
T Consensus 249 ~~~~~~ 254 (260)
T 3jxi_A 249 IADAAA 254 (260)
T ss_dssp HHHHC-
T ss_pred CCcccc
Confidence 876554
No 99
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.84 E-value=2.1e-21 Score=176.28 Aligned_cols=151 Identities=22% Similarity=0.187 Sum_probs=129.6
Q ss_pred CccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCC--Cccccccc
Q 013316 6 DRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND--KVELEAQN 82 (445)
Q Consensus 6 ~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~--g~~v~~~d 82 (445)
+.+..+ .|.||||+||..|+.++++.|+ ..|++++..+. .|+||||+|+..|+.+++++|++.+... ...++..+
T Consensus 37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~ 114 (236)
T 1ikn_D 37 FLNFQNNLQQTPLHLAVITNQPEIAEALL-GAGCDPELRDF-RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 114 (236)
T ss_dssp CCCCCCTTCCCHHHHHHHTTCHHHHHCCC-SCCCCSCCCCT-TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCC
T ss_pred HhhccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccC
Confidence 556555 5999999999999999998777 46899999987 7999999999999999999999963211 12357788
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccc-CCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-EGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA 159 (445)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~-~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a 159 (445)
..|.||||+|+..|+.+++++|+++|++++.++. .|+||| |+|+..++.+++++|+++|+++..++..+.++...+
T Consensus 115 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL-~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A 191 (236)
T 1ikn_D 115 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL-HLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 191 (236)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH-HHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHH
Confidence 9999999999999999999999999999999998 999999 788888999999999999998877766665555443
No 100
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.84 E-value=1e-20 Score=188.24 Aligned_cols=102 Identities=18% Similarity=0.176 Sum_probs=84.4
Q ss_pred HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 013316 168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 247 (445)
Q Consensus 168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~ 247 (445)
|++++|++.+++.+.+++..+. .+..++.++||+||||||||++|+++|+.++. ..+|+.++++
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~-----------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~-----~~~~~~~~~~ 99 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIK-----------SKKMAGRAVLLAGPPGTGKTALALAIAQELGS-----KVPFCPMVGS 99 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHH-----------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT-----TSCEEEEEGG
T ss_pred hhhccCHHHHHHHHHHHHHHHH-----------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC-----CceEEEEeHH
Confidence 5779999999999888765442 12345679999999999999999999999873 1399999999
Q ss_pred cccccccCCchhHHHHHHHHc------cCcEEEEcCccccccCCC
Q 013316 248 DLVGEFVGHTGPKTRRRIKEA------EGGILFVDEAYRLIPMQK 286 (445)
Q Consensus 248 ~l~~~~~g~~~~~~~~~~~~a------~~~il~lDEid~l~~~~~ 286 (445)
.+.+.++|+++. +++.|+.+ .++||||||||.+.++++
T Consensus 100 ~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~ 143 (456)
T 2c9o_A 100 EVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCET 143 (456)
T ss_dssp GGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--
T ss_pred HHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccC
Confidence 999999998887 88999887 469999999999986553
No 101
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.84 E-value=7.9e-21 Score=175.33 Aligned_cols=138 Identities=20% Similarity=0.230 Sum_probs=120.3
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~ 91 (445)
.|+||||+||..|+.++++.|+. .+.++|..+. .|+||||+|+..|+.+++++|++. |++++.+|..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~ 75 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLIS-QGWAVNIITA-DHVSPLHEACLGGHLSCVKILLKH----GAQVNGVTADWHTPLFN 75 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHC----CCCCCCCCCCCCCHHHH
Confidence 58899999999999999998886 5788999987 799999999999999999999995 88999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET 157 (445)
Q Consensus 92 A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~ 157 (445)
|+..|+.+++++|+++|++++. +..|.||| ++|+..++.+++++|++++.+...++..+.++..
T Consensus 76 A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 139 (261)
T 2xai_A 76 ACVSGSWDCVNLLLQHGASVQP-ESDLASPI-HEAARRGHVECVNSLIAYGGNIDHKISHLGTPLY 139 (261)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSC-SCTTCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCC-CCCCCCHH-HHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence 9999999999999999999885 45599999 7888889999999999999887766555544443
No 102
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.84 E-value=5.3e-21 Score=202.06 Aligned_cols=179 Identities=21% Similarity=0.344 Sum_probs=152.1
Q ss_pred HHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEee
Q 013316 166 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 245 (445)
Q Consensus 166 ~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~ 245 (445)
..|++|+|++.++++|++++ ..+..+++.+..++..++.+++|+||||||||++|++|+..++. +++.++
T Consensus 201 v~~~di~G~~~~~~~l~e~i---~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~-------~~i~v~ 270 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMV---ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------FFFLIN 270 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHH---HHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC-------EEEEEE
T ss_pred CCHHHhCChHHHHHHHHHHH---HHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-------cEEEEE
Confidence 46788999999999999854 45566777777778888999999999999999999999988765 899999
Q ss_pred cccccccccCCchhHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC----CcEEEEEecCch
Q 013316 246 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSE 318 (445)
Q Consensus 246 ~~~l~~~~~g~~~~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~i~a~~~~ 318 (445)
++++.+.+.|+....+..+|..+ .++++||||+|.+.++++....+...++++.|+..+++ ..+++|++++..
T Consensus 271 ~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~ 350 (806)
T 1ypw_A 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (806)
T ss_dssp HHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCT
T ss_pred chHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCc
Confidence 99999999999888888888776 35899999999999988766677778888889888874 457788877665
Q ss_pred hHHHHHhhCccccc--ccccceeCCCCCHHHHHHHHHHHHhcc
Q 013316 319 PMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQ 359 (445)
Q Consensus 319 ~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~ 359 (445)
.. .+|++++ ||+..+.++.|+.+++.+|++.++.+.
T Consensus 351 ~~-----ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~ 388 (806)
T 1ypw_A 351 NS-----IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM 388 (806)
T ss_dssp TT-----SCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTS
T ss_pred hh-----cCHHHhcccccccccccCCCCHHHHHHHHHHHHhcC
Confidence 32 3888988 999999999999999999999877664
No 103
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.84 E-value=5.8e-21 Score=172.57 Aligned_cols=136 Identities=25% Similarity=0.283 Sum_probs=123.8
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~ 80 (445)
++|++++..+ .|.||||+|+..|+.++++.|+. .+.+++..+. .|.||||+|+..|+.+++++|+++ |++++.
T Consensus 94 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~ 167 (231)
T 3aji_A 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDH-YDATAMHRAAAKGNLKMVHILLFY----KASTNI 167 (231)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----TCCSCC
T ss_pred HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHhc----CCCccc
Confidence 4677777766 69999999999999999998775 6888999887 799999999999999999999995 889999
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144 (445)
Q Consensus 81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~ 144 (445)
+|..|.||||+|+..++.+++++|+++|++++.+|..|+||+ ++|...++.+++++|..++++
T Consensus 168 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 168 QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPL-QVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHSCHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHhhHHHHHHHHHcccccc
Confidence 999999999999999999999999999999999999999999 778888889999999877653
No 104
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.84 E-value=2.1e-21 Score=169.43 Aligned_cols=135 Identities=17% Similarity=0.129 Sum_probs=65.9
Q ss_pred chHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcH----HHHHHhhcCCCCCCcccccccCCCCcHH
Q 013316 14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKA----EIVKSLLEWPGNDKVELEAQNMYGETPL 89 (445)
Q Consensus 14 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~----~iv~~Ll~~~~~~g~~v~~~d~~g~tpL 89 (445)
+++||.||..|+.+.++.++... ++..++..|+||||+|+.+++. +++++|++. |+++|.+|..|+|||
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~----Gadvn~~d~~g~TpL 79 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINK----GADIKSRTKEGTTLF 79 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT----TCCSSCCCTTCCCTH
T ss_pred ccHHHHHHHcCCHHHHHHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC----CCCCCCCCCCCCcHH
Confidence 34555555555555555544332 2233311355555555555543 355555552 555555555555555
Q ss_pred HHHHHcCC------HHHHHHHHhcCCCCcccccCCC-ChhhhhhcCCCC-----hHHHHHHHh-hhhhHHhhhhhhhhhh
Q 013316 90 HMAAKNGC------NEAAKLLLAHGAFIEAKANEGK-TPLDHLSNGPGS-----AKLRELLLW-HSEEQRKRRALEACSE 156 (445)
Q Consensus 90 h~A~~~g~------~~~~~~Ll~~ga~~~~~~~~g~-tpl~~~a~~~~~-----~~i~~~ll~-~~~~~~~~~~~~~~~~ 156 (445)
|+|+..++ .+++++|+++|++++.+|..|+ ||| |+|...+. .+++++|+. +|+++..++..+.++.
T Consensus 80 h~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpL-h~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL 158 (186)
T 3t8k_A 80 FPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF-KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL 158 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTT-GGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHH-HHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH
Confidence 55555544 3455555555555555555555 555 33333221 235555555 5555544444443333
No 105
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.84 E-value=2e-21 Score=169.39 Aligned_cols=110 Identities=28% Similarity=0.292 Sum_probs=102.3
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccccc-CCCCcHH
Q 013316 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPL 89 (445)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d-~~g~tpL 89 (445)
..|.||||+||..|+.++++.|+. +.++|..+. .|+||||+|+..|+.+++++|+++ |++++.++ ..|.|||
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~----ga~~~~~~~~~g~tpL 114 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE--DRDVDAVDE-NGRTALLFVAGLGSDKCVRLLAEA----GADLDHRDMRGGLTAL 114 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCSSSSCCHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCcCCCCCCCCHH
Confidence 368899999999999999999886 789999987 799999999999999999999995 88999888 8899999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcC
Q 013316 90 HMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNG 128 (445)
Q Consensus 90 h~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~ 128 (445)
|+|+..|+.+++++|+++|++++.+|.+|+||| ++|..
T Consensus 115 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl-~~A~~ 152 (183)
T 3deo_A 115 HMAAGYVRPEVVEALVELGADIEVEDERGLTAL-ELARE 152 (183)
T ss_dssp HHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHH-HHHHH
T ss_pred HHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHH-HHHHH
Confidence 999999999999999999999999999999999 55554
No 106
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.84 E-value=6.4e-21 Score=177.03 Aligned_cols=136 Identities=21% Similarity=0.260 Sum_probs=117.0
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCC-------------CCCChHHHHHHhCCcHHHHHHhhcCCCCCCcc
Q 013316 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNP-------------VMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE 77 (445)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-------------~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~ 77 (445)
..|.||||+||..|+.++++.|+. .+++++..+. ..|+||||+|+..|+.+++++|++.+. .|++
T Consensus 99 ~~g~tpL~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~gad 176 (273)
T 2pnn_A 99 YKGQTALHIAIERRNMTLVTLLVE-NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW-QPAD 176 (273)
T ss_dssp TTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSS-CCCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH-CCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc-CCCC
Confidence 379999999999999999998886 5889998874 149999999999999999999999210 1789
Q ss_pred cccccCCCCcHHHHHHHcCC---------HHHHHHHHhcCCCCc-------ccccCCCChhhhhhcCCCChHHHHHHHhh
Q 013316 78 LEAQNMYGETPLHMAAKNGC---------NEAAKLLLAHGAFIE-------AKANEGKTPLDHLSNGPGSAKLRELLLWH 141 (445)
Q Consensus 78 v~~~d~~g~tpLh~A~~~g~---------~~~~~~Ll~~ga~~~-------~~~~~g~tpl~~~a~~~~~~~i~~~ll~~ 141 (445)
++.+|..|+||||+|+..|+ .+++++|+++|++++ .+|..|+||| ++|+..++.+++++|+++
T Consensus 177 ~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL-~~A~~~g~~~iv~~Ll~~ 255 (273)
T 2pnn_A 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPL-ALAASSGKIGVLAYILQR 255 (273)
T ss_dssp TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH-HHHHHTTCHHHHHHHHHH
T ss_pred ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHH-HHHHHhChHHHHHHHHHC
Confidence 99999999999999999988 899999999999997 4899999999 888889999999999999
Q ss_pred hh-hHHhhh
Q 013316 142 SE-EQRKRR 149 (445)
Q Consensus 142 ~~-~~~~~~ 149 (445)
|+ ++..+.
T Consensus 256 ga~dp~~~~ 264 (273)
T 2pnn_A 256 EIHEPECRH 264 (273)
T ss_dssp HTC------
T ss_pred CCCCchhhh
Confidence 98 555443
No 107
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.84 E-value=9.7e-21 Score=181.78 Aligned_cols=150 Identities=25% Similarity=0.298 Sum_probs=89.8
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCC-------
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN------- 73 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~------- 73 (445)
++|++++..+ .|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|++++..
T Consensus 79 ~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~ 156 (351)
T 3utm_A 79 QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLK-HGACVNAMDL-WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCH 156 (351)
T ss_dssp HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred HcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHH-CCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC
Confidence 3455555554 46666666666666666665554 3566666664 566666666666666666666654211
Q ss_pred -------------------------------------------------------------------------------C
Q 013316 74 -------------------------------------------------------------------------------D 74 (445)
Q Consensus 74 -------------------------------------------------------------------------------~ 74 (445)
.
T Consensus 157 g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~ 236 (351)
T 3utm_A 157 GKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK 236 (351)
T ss_dssp SCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT
T ss_pred CCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc
Confidence 1
Q ss_pred CcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhh
Q 013316 75 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEAC 154 (445)
Q Consensus 75 g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~ 154 (445)
|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||| |+|...++.+++++|+++|+++..++..+.+
T Consensus 237 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L-~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~t 315 (351)
T 3utm_A 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTAL-HRAALAGHLQTCRLLLSYGSDPSIISLQGFT 315 (351)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH-HHHHHcCcHHHHHHHHHcCCCCCCcCCCCCC
Confidence 234445555666666666666666666666666666666666666666 5555566666666666666665555444433
No 108
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.84 E-value=2e-20 Score=170.03 Aligned_cols=134 Identities=24% Similarity=0.295 Sum_probs=119.4
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHh---hCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCC
Q 013316 10 RSAKPATIHGCAQSGDLLAFQRLLR---ENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (445)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~---~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~ 86 (445)
...|.||||+||..|+.++++.|+. ..+.+++..+. .|+||||+|+..|+.+++++|++. |++++.++..|.
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~ 80 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN-LRQTPLHLAVITTLPSVVRLLVTA----GASPMALDRHGQ 80 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSC
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccc-cCCCHHHHHHHcCCHHHHHHHHHc----CCCccccCCCCC
Confidence 3478999999999999999998886 47888999887 799999999999999999999995 788999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCC----CCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhh
Q 013316 87 TPLHMAAKNGCNEAAKLLLAHGA----FIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 149 (445)
Q Consensus 87 tpLh~A~~~g~~~~~~~Ll~~ga----~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~ 149 (445)
||||+|+..++.+++++|++.|+ +++..+..|.||| +.|+..++.+++++|++.+.+.....
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~g~~~~~~~ 146 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL-HVAVNTECQETVQLLLERGADIDAVD 146 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHH-HHHHHcCCHHHHHHHHHcCCCccccc
Confidence 99999999999999999999987 8889999999999 77888889999999999988766544
No 109
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.83 E-value=1.4e-20 Score=170.79 Aligned_cols=139 Identities=24% Similarity=0.308 Sum_probs=65.8
Q ss_pred ccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccccc
Q 013316 4 NQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN 82 (445)
Q Consensus 4 ~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d 82 (445)
|++++..+ .|.||||+|+..|+.++++.|+. .+.+++..+. .|.||||+|+..|+.+++++|++. ...+++..+
T Consensus 34 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~---~~~~~~~~~ 108 (237)
T 3b7b_A 34 GANIDTCSEDQRTPLMEAAENNHLEAVKYLIK-AGALVDPKDA-EGSTCLHLAAKKGHYEVVQYLLSN---GQMDVNCQD 108 (237)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCCCCCCT-TSCCHHHHHHHTTCHHHHHHHHTT---TCCCTTCCC
T ss_pred CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHh-CCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhC---CCCCcccCC
Confidence 33443332 34455555555555554444442 3444444443 344555555555555555555443 113444444
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhh
Q 013316 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 148 (445)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~ 148 (445)
..|.||||+|+..++.+++++|+++|++++.++..|.||| |.|...++.+++++|++.+.+....
T Consensus 109 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~g~~~~~~ 173 (237)
T 3b7b_A 109 DGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICL-HWAAFSGCVDIAEILLAAKCDLHAV 173 (237)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHCCHHHHHHHHTTTCCTTCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHH-HHHHHCCCHHHHHHHHHcCCCCCCc
Confidence 4555555555555555555555555555555555555555 4444444455555555554444333
No 110
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.83 E-value=2.4e-21 Score=184.92 Aligned_cols=151 Identities=17% Similarity=0.134 Sum_probs=130.3
Q ss_pred CCccCccC-CC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCc---HHHHHHhhcCCCCCCc
Q 013316 2 QKNQDRRS-RS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK---AEIVKSLLEWPGNDKV 76 (445)
Q Consensus 2 ~~~~~~~~-~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~---~~iv~~Ll~~~~~~g~ 76 (445)
+.|++++. .+ .|.||||+||..|+.++++.||. .|++++..+. .|+||||+|+..|+ .++++.|+++ ..+
T Consensus 118 ~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-~Gad~n~~d~-~g~TpLh~A~~~g~~~~~~~~~~ll~~---~~~ 192 (327)
T 1sw6_A 118 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGDN-MGESCLVKAVKSVNNYDSGTFEALLDY---LYP 192 (327)
T ss_dssp TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTBCCT-TCCCHHHHHHHSSHHHHTTCHHHHHHH---HGG
T ss_pred hcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCC-CCCCHHHHHHHhcccccHHHHHHHHHh---hhc
Confidence 56788887 44 79999999999999999998885 5899999997 79999999999998 6777777775 236
Q ss_pred ccccccCCCCcHHHHHHH----cCCHHHHHHHHhcCC-------------------------------------------
Q 013316 77 ELEAQNMYGETPLHMAAK----NGCNEAAKLLLAHGA------------------------------------------- 109 (445)
Q Consensus 77 ~v~~~d~~g~tpLh~A~~----~g~~~~~~~Ll~~ga------------------------------------------- 109 (445)
+++.+|..|.||||+|+. .|+.+++++|++.++
T Consensus 193 ~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll 272 (327)
T 1sw6_A 193 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII 272 (327)
T ss_dssp GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHH
T ss_pred cccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHH
Confidence 789999999999999999 899999999998743
Q ss_pred --CCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhH
Q 013316 110 --FIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETK 158 (445)
Q Consensus 110 --~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~ 158 (445)
+++.+|..|+||| |+|+..++.+++++|+++|+++..++..+.++...
T Consensus 273 ~~~~n~~d~~G~TpL-h~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~ 322 (327)
T 1sw6_A 273 ANMLNAQDSNGDTCL-NIAARLGNISIVDALLDYGADPFIANKSGLRPVDF 322 (327)
T ss_dssp HHTTTCCCTTSCCHH-HHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGG
T ss_pred HhCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence 5788889999999 88888899999999999999988877766666543
No 111
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.83 E-value=8.1e-21 Score=176.75 Aligned_cols=147 Identities=20% Similarity=0.210 Sum_probs=128.6
Q ss_pred ccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHH-----hCCcHHHHHHhhcCCCCCCccccc
Q 013316 7 RRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSA-----GYNKAEIVKSLLEWPGNDKVELEA 80 (445)
Q Consensus 7 ~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~-----~~g~~~iv~~Ll~~~~~~g~~v~~ 80 (445)
.+..+ .|.||||+||..|+.++++.|+.....+++..+. .|+||||+|+ ..++.+++++|++. |.+.+.
T Consensus 104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~----g~~~~~ 178 (276)
T 4hbd_A 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNR-AGYSPIMLTALATLKTQDDIETVLQLFRL----GNINAK 178 (276)
T ss_dssp HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCT-TSCCHHHHGGGCCCCSHHHHHHHHHHHHH----SCTTCC
T ss_pred CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCC-CCCCHHHHHHHHHhhhhhhHHHHHHHHHc----CCCccc
Confidence 34444 6999999999999999999998765558999887 7999999999 66889999999985 777888
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHh-hhhhHHhhhhhhhhhhhHH
Q 013316 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLW-HSEEQRKRRALEACSETKA 159 (445)
Q Consensus 81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~-~~~~~~~~~~~~~~~~~~a 159 (445)
.+..|.||||+|+..|+.+++++|+++|++++.+|..|+||| |+|+..++.+++++|+. .+++...++..+.++...+
T Consensus 179 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpL-h~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A 257 (276)
T 4hbd_A 179 ASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTAL-MCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVA 257 (276)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHH-HHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHH
Confidence 899999999999999999999999999999999999999999 78888899999999999 8888877776666665544
No 112
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.83 E-value=9.8e-21 Score=183.34 Aligned_cols=151 Identities=15% Similarity=0.106 Sum_probs=110.8
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCC--------------------------------------
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNE-------------------------------------- 42 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~-------------------------------------- 42 (445)
+.|++++..+ .|.||||+||..|+.++++.|+.. +.+++.
T Consensus 41 ~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 119 (364)
T 3ljn_A 41 ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV-GEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLN 119 (364)
T ss_dssp HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHH-CCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHT
T ss_pred HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHh
Confidence 3556666655 477777777777777777766654 333333
Q ss_pred --------------CCCCCCChHHHHHHhCC--cHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHh
Q 013316 43 --------------RNPVMAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 106 (445)
Q Consensus 43 --------------~~~~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~ 106 (445)
.+. .|+||||+|+..| +.+++++|+++ |++++.+|..|.||||+|+..|+.+++++|++
T Consensus 120 ~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~~~v~~Ll~~----ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 120 ECDEREVNEIGSHVKHC-KGQTALHWCVGLGPEYLEMIKILVQL----GASPTAKDKADETPLMRAMEFRNREALDLMMD 194 (364)
T ss_dssp CCCCCCEEEETTEEEEE-SCCCHHHHHHHSCGGGHHHHHHHHHH----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred hcchHhhhhhccccCCC-CCCCHHHHHHHcCCchHHHHHHHHHc----CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 443 5778888888888 78888888874 77888888888888888888888888888888
Q ss_pred cCCC-----CcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316 107 HGAF-----IEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA 159 (445)
Q Consensus 107 ~ga~-----~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a 159 (445)
+|++ ++.+|..|+||| |+|+..++.+++++|++++++++.++..+.++...+
T Consensus 195 ~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A 251 (364)
T 3ljn_A 195 TVPSKSSLRLDYANKQGNSHL-HWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLS 251 (364)
T ss_dssp HCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred cccccccccccccCCCCCcHH-HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 8888 888888888888 777778888888888888887776665555554433
No 113
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.83 E-value=5.6e-21 Score=178.73 Aligned_cols=130 Identities=18% Similarity=0.129 Sum_probs=116.1
Q ss_pred ccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCC
Q 013316 7 RRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYG 85 (445)
Q Consensus 7 ~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g 85 (445)
++..+ .|.||||+||..|+.++++.|+. .+.+++..+ |+||||+|+..|+.+++++|+++ |++++.+|..|
T Consensus 24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~---g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~d~~g 95 (285)
T 3kea_A 24 TFKADVHGHSASYYAIADNNVRLVCTLLN-AGALKNLLE---NEFPLHQAATLEDTKIVKILLFS----GLDDSQFDDKG 95 (285)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTGGGSCCT---TCCHHHHHTTSSSCHHHHHHHHT----TCCTTCCCTTS
T ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCCC---CCCHHHHHHHcCCHHHHHHHHHC----CCCCCCcCCCC
Confidence 44444 69999999999999999998886 478888774 89999999999999999999995 88999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCcccccCC-CChhhhhhcCCCChHHHHHHHhhhhhH
Q 013316 86 ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEG-KTPLDHLSNGPGSAKLRELLLWHSEEQ 145 (445)
Q Consensus 86 ~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g-~tpl~~~a~~~~~~~i~~~ll~~~~~~ 145 (445)
.||||+|+..|+.+++++|+++|++++.++..| .||| |+|+..++.+++++|++++++.
T Consensus 96 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L-~~A~~~~~~~~v~~Ll~~g~~~ 155 (285)
T 3kea_A 96 NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSF-YHAVMLNDVSIVSYFLSEIPST 155 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHH-HHHHHTTCHHHHHHHHTTSCTT
T ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHH-HHHHHcCCHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999 7999 7788889999999999998765
No 114
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=175.32 Aligned_cols=135 Identities=21% Similarity=0.229 Sum_probs=78.1
Q ss_pred CccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316 3 KNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (445)
Q Consensus 3 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~ 81 (445)
.|++++..+ .|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|++. |++++..
T Consensus 81 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~ 154 (285)
T 3d9h_A 81 QGWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGVTA-DWHTPLFNACVSGSWDCVNLLLQH----GASVQPE 154 (285)
T ss_dssp TTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHHHT----TCCSSCS
T ss_pred CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCCCC-CCCCHHHHHHHcCHHHHHHHHHHC----CCCCCCC
Confidence 455555544 46666666666666666665554 3566666664 566666666666666666666663 4444432
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhH
Q 013316 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQ 145 (445)
Q Consensus 82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~ 145 (445)
+ .|.||||+|+..|+.+++++|++.|++++.+|..|.||| ++|+..++.+++++|++.+++.
T Consensus 155 ~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~ 216 (285)
T 3d9h_A 155 S-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPL-YLACENQQRACVKKLLESGADV 216 (285)
T ss_dssp C-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHH-HHHHHTTCHHHHHHHHHTTCCT
T ss_pred C-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH-HHHHHcCcHHHHHHHHHCCCCC
Confidence 2 355555555555555555555555555555555555555 4455555555555555555444
No 115
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.83 E-value=5.8e-21 Score=175.91 Aligned_cols=142 Identities=21% Similarity=0.188 Sum_probs=118.4
Q ss_pred CCCchHhHHHH---HcCCHHHHHHHHhhC----------CCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcc
Q 013316 11 SAKPATIHGCA---QSGDLLAFQRLLREN----------PSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE 77 (445)
Q Consensus 11 ~~~~t~L~~A~---~~g~~~~v~~ll~~~----------~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~ 77 (445)
..|.||||+|+ ..|+.++++.|+... ...++..+. .|+||||+|+..|+.+++++|+++ |++
T Consensus 44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~----ga~ 118 (260)
T 3jxi_A 44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYY-RGQTALHIAIERRCKHYVELLVEK----GAD 118 (260)
T ss_dssp TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSE-ESBCHHHHHHHTTCHHHHHHHHHT----TCC
T ss_pred CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccccc-CCCCHHHHHHHcCCHHHHHHHHhC----CCC
Confidence 45999999999 679999999998752 133444553 699999999999999999999995 889
Q ss_pred ccccc--------------CCCCcHHHHHHHcCCHHHHHHHHh---cCCCCcccccCCCChhhhhhcCCCC---------
Q 013316 78 LEAQN--------------MYGETPLHMAAKNGCNEAAKLLLA---HGAFIEAKANEGKTPLDHLSNGPGS--------- 131 (445)
Q Consensus 78 v~~~d--------------~~g~tpLh~A~~~g~~~~~~~Ll~---~ga~~~~~~~~g~tpl~~~a~~~~~--------- 131 (445)
++.++ .+|.||||+|+..|+.+++++|++ +|++++.+|..|+||| |+|+..++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpL-h~A~~~~~~~~~~~~~~ 197 (260)
T 3jxi_A 119 VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL-HALVAIADNTRENTKFV 197 (260)
T ss_dssp TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHH-HHHHHHCCSSHHHHHHH
T ss_pred cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHH-HHHHHhccCchhHHHHH
Confidence 99988 689999999999999999999999 9999999999999999 66664444
Q ss_pred hHHHHHHHhhhhhH-------HhhhhhhhhhhhH
Q 013316 132 AKLRELLLWHSEEQ-------RKRRALEACSETK 158 (445)
Q Consensus 132 ~~i~~~ll~~~~~~-------~~~~~~~~~~~~~ 158 (445)
.+++++|+++|++. ..++..+.++...
T Consensus 198 ~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~ 231 (260)
T 3jxi_A 198 TKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM 231 (260)
T ss_dssp HHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHH
T ss_pred HHHHHHHHHhCcccccccchhhcccCCCCCHHHH
Confidence 58999999999988 4455555555443
No 116
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.83 E-value=4.1e-20 Score=172.82 Aligned_cols=149 Identities=19% Similarity=0.225 Sum_probs=127.9
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~ 80 (445)
+.|++++..+ .|.||||+|+..|+.++++.|+. .+.+++..+ .|+||||+|+..|+.+++++|+++ |++++.
T Consensus 113 ~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~ 185 (285)
T 3d9h_A 113 KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQ-HGASVQPES--DLASPIHEAARRGHVECVNSLIAY----GGNIDH 185 (285)
T ss_dssp HTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCSC--TTSCHHHHHHHHTCHHHHHHHHHT----TCCTTC
T ss_pred HCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHH-CCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHC----CCCCCC
Confidence 4677887766 69999999999999999987775 577777665 489999999999999999999995 788999
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA 159 (445)
Q Consensus 81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a 159 (445)
+|..|.||||+|+..|+.+++++|++.|++++. +..|.||| ++|...++.+++++|++++++...++..+.++...+
T Consensus 186 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L-~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A 262 (285)
T 3d9h_A 186 KISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPL-HAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV 262 (285)
T ss_dssp CBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGS
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHh
Confidence 999999999999999999999999999999985 88999999 788888999999999999988877766666655443
No 117
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.83 E-value=8.3e-21 Score=173.39 Aligned_cols=109 Identities=28% Similarity=0.297 Sum_probs=101.5
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccccc-CCCCcHH
Q 013316 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPL 89 (445)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d-~~g~tpL 89 (445)
..|.||||+||..|+.++++.|+. +.++|..+. .|+||||+||..|+.+++++|+++ |++++.++ ..|.|||
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~~g~t~L 115 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE--DRDVDAVDE-NGRTALLFVAGLGSDKCVRLLAEA----GADLDHRDMRGGLTAL 115 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCT-TSCBHHHHHHHHTCHHHHHHHHHT----TCCTTCCCSSSCCCHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCC-CCCCHHHHHHHCCCHHHHHHHHHc----CCCCCcCCCCCCCCHH
Confidence 368899999999999999998886 789999997 799999999999999999999995 89999988 8899999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhc
Q 013316 90 HMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSN 127 (445)
Q Consensus 90 h~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~ 127 (445)
|+|+..|+.+++++|+++|++++.+|..|+||| ++|+
T Consensus 116 ~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l-~~A~ 152 (244)
T 3ui2_A 116 HMAAGYVRPEVVEALVELGADIEVEDERGLTAL-ELAR 152 (244)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH-HHHH
Confidence 999999999999999999999999999999999 5554
No 118
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.82 E-value=3e-20 Score=172.85 Aligned_cols=132 Identities=21% Similarity=0.229 Sum_probs=123.4
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCc----HHHHHHhhcCCCCCCcccccccCCCC
Q 013316 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK----AEIVKSLLEWPGNDKVELEAQNMYGE 86 (445)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~g~~v~~~d~~g~ 86 (445)
..|.||||+|+..|+.++++.|+...+.+++..+. .|+||||+|+..++ .+++++|++. |++++.+|..|.
T Consensus 146 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~i~~~Ll~~----g~~~~~~~~~g~ 220 (285)
T 1wdy_A 146 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDH----GADVNVRGERGK 220 (285)
T ss_dssp CCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCT-TSCCHHHHHHHCSCTTTHHHHHHHHHHT----TCCSSCCCTTSC
T ss_pred cCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCC-CCCCHHHHHHHccccchHHHHHHHHHHc----CCCCCCcCCCCC
Confidence 46899999999999999999999877999999987 79999999999999 9999999995 889999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHh-cCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhh
Q 013316 87 TPLHMAAKNGCNEAAKLLLA-HGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 148 (445)
Q Consensus 87 tpLh~A~~~g~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~ 148 (445)
||||+|+..|+.+++++|++ .|++++.+|..|+||| ++|...++.+++++|+++|+++..+
T Consensus 221 t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l-~~A~~~~~~~i~~~Ll~~Ga~~~~~ 282 (285)
T 1wdy_A 221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL-LLAVELKLKKIAELLCKRGASTDCG 282 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred cHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHH-HHHHHcCcHHHHHHHHHcCCCCCcc
Confidence 99999999999999999998 8999999999999999 7888889999999999999886544
No 119
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.82 E-value=1.3e-20 Score=187.05 Aligned_cols=148 Identities=26% Similarity=0.308 Sum_probs=103.8
Q ss_pred CccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316 3 KNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (445)
Q Consensus 3 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~ 81 (445)
.|++++..+ .|.||||+|+..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++ |++++.+
T Consensus 234 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~ 307 (437)
T 1n11_A 234 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLS-KQANGNLGNK-SGLTPLHLVAQEGHVPVADVLIKH----GVMVDAT 307 (437)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHH----TCCTTCC
T ss_pred cCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh-cCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhC----CccCCCC
Confidence 455555544 46677777777777777766554 4566666665 577777777777777777777763 6677777
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET 157 (445)
Q Consensus 82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~ 157 (445)
|..|.||||+|+..|+.+++++|+++|++++.+|..|+||| |+|...++.+++++|+++|+++..++..+.++..
T Consensus 308 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L-~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~ 382 (437)
T 1n11_A 308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPL-HQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLA 382 (437)
T ss_dssp CSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHH
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHH-HHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHH
Confidence 77777788887777777788877777777777777778887 6666677777778777777776666555544433
No 120
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.82 E-value=1.1e-20 Score=164.80 Aligned_cols=126 Identities=13% Similarity=0.004 Sum_probs=111.8
Q ss_pred CCchHhHHHHHcCCHH----HHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCc------HHHHHHhhcCCCCCCcccccc
Q 013316 12 AKPATIHGCAQSGDLL----AFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK------AEIVKSLLEWPGNDKVELEAQ 81 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~----~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~------~~iv~~Ll~~~~~~g~~v~~~ 81 (445)
.|+||||+|+..|+.+ +++.|+ ..|+++|.++. .|+||||+|+..++ .+++++|+++ |+++|.+
T Consensus 37 ~g~T~Lh~A~~~~~~~~~~~iv~~Ll-~~Gadvn~~d~-~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~----Gadin~~ 110 (186)
T 3t8k_A 37 LKSNILYDVLRNNNDEARYKISMFLI-NKGADIKSRTK-EGTTLFFPLFQGGGNDITGTTELCKIFLEK----GADITAL 110 (186)
T ss_dssp HTTTHHHHHTTCSCHHHHHHHHHHHH-HTTCCSSCCCT-TCCCTHHHHHHHCTTCHHHHHHHHHHHHHT----TCCSSSC
T ss_pred CCCCHHHHHHHcCCcchHHHHHHHHH-HCCCCCCCCCC-CCCcHHHHHHHcCCcchhhHHHHHHHHHHC----CCCCCcc
Confidence 5999999999999864 677666 57999999997 79999999999987 6889999995 9999999
Q ss_pred cCCCC-cHHHHHHHcC-----CHHHHHHHHh-cCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316 82 NMYGE-TPLHMAAKNG-----CNEAAKLLLA-HGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144 (445)
Q Consensus 82 d~~g~-tpLh~A~~~g-----~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~ 144 (445)
|..|. ||||+|+..+ +.+++++|++ +|++++.+|..|+||| ++|...++.+++++|.....+
T Consensus 111 d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL-~~A~~~~~~~~v~~L~~~~~~ 179 (186)
T 3t8k_A 111 YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL-EFVKRCQKPIALKMMEDYIKK 179 (186)
T ss_dssp BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH-HHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH-HHHHHcCCHHHHHHHHHHHHH
Confidence 99999 9999999844 4569999999 9999999999999999 788889999999999876544
No 121
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.82 E-value=3.1e-20 Score=173.61 Aligned_cols=145 Identities=14% Similarity=0.006 Sum_probs=127.7
Q ss_pred CCccCccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316 2 QKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (445)
Q Consensus 2 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~ 81 (445)
+.|++++.. .|.||||+||..|+.++++.|+. .|++++..+. .|+||||+|+..|+.+++++|+++ |++++.+
T Consensus 52 ~~g~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~ 124 (285)
T 3kea_A 52 NAGALKNLL-ENEFPLHQAATLEDTKIVKILLF-SGLDDSQFDD-KGNTALYYAVDSGNMQTVKLFVKK----NWRLMFY 124 (285)
T ss_dssp HTTGGGSCC-TTCCHHHHHTTSSSCHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHH----CGGGGGC
T ss_pred hCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHhc----CCCCCcc
Confidence 467888877 58999999999999999998875 5889999987 799999999999999999999995 8999999
Q ss_pred cCCC-CcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhh
Q 013316 82 NMYG-ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACS 155 (445)
Q Consensus 82 d~~g-~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~ 155 (445)
+..| .||||+|+..|+.+++++|+++|+++... ..|.||| |+|+..++.+++++|+++++++..++..+.++
T Consensus 125 ~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L-~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~ 197 (285)
T 3kea_A 125 GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCI-HITIKNGHVDMMILLLDYMTSTNTNNSLLFIP 197 (285)
T ss_dssp SSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHH-HHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCT
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHH-HHHHHcChHHHHHHHHHcCCCCCcccCCCCCh
Confidence 9999 89999999999999999999999887332 2899999 78888899999999999999988777655554
No 122
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.82 E-value=3.9e-20 Score=171.77 Aligned_cols=143 Identities=20% Similarity=0.184 Sum_probs=118.6
Q ss_pred CCCCchHhHHHHHc---CCHHHHHHHHhhCC----------CCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCc
Q 013316 10 RSAKPATIHGCAQS---GDLLAFQRLLRENP----------SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76 (445)
Q Consensus 10 ~~~~~t~L~~A~~~---g~~~~v~~ll~~~~----------~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~ 76 (445)
...|.||||+||.. |+.++++.|+.... ......+. .|+||||+|+..|+.+++++|+++ |+
T Consensus 51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~----ga 125 (273)
T 2pnn_A 51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYY-KGQTALHIAIERRNMTLVTLLVEN----GA 125 (273)
T ss_dssp TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTT-TTCCHHHHHHHTTCHHHHHHHHHT----TC
T ss_pred CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccC-CCCCHHHHHHHcCCHHHHHHHHHC----CC
Confidence 45799999999987 99999999887521 11222444 699999999999999999999995 88
Q ss_pred ccccccC--------------CCCcHHHHHHHcCCHHHHHHHHh---cCCCCcccccCCCChhhhhhcCCCC--------
Q 013316 77 ELEAQNM--------------YGETPLHMAAKNGCNEAAKLLLA---HGAFIEAKANEGKTPLDHLSNGPGS-------- 131 (445)
Q Consensus 77 ~v~~~d~--------------~g~tpLh~A~~~g~~~~~~~Ll~---~ga~~~~~~~~g~tpl~~~a~~~~~-------- 131 (445)
+++.++. .|.||||+|+..|+.+++++|++ +|++++.+|..|+||| |+|+..++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpL-h~A~~~~~~~~~~~~~ 204 (273)
T 2pnn_A 126 DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVL-HALVEVADNTVDNTKF 204 (273)
T ss_dssp CTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHH-HHHHHHCCSCHHHHHH
T ss_pred CcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHH-HHHHHccCcchhHHHH
Confidence 9998887 79999999999999999999999 9999999999999999 66666555
Q ss_pred -hHHHHHHHhhhhhHHh-------hhhhhhhhhhH
Q 013316 132 -AKLRELLLWHSEEQRK-------RRALEACSETK 158 (445)
Q Consensus 132 -~~i~~~ll~~~~~~~~-------~~~~~~~~~~~ 158 (445)
.+++++|+.++++.+. ++..+.++...
T Consensus 205 ~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~ 239 (273)
T 2pnn_A 205 VTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL 239 (273)
T ss_dssp HHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHH
T ss_pred HHHHHHHHHHhhhhcccccccccccCCCCCCHHHH
Confidence 6899999999998753 44445455443
No 123
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.82 E-value=5.5e-20 Score=165.68 Aligned_cols=145 Identities=24% Similarity=0.236 Sum_probs=122.7
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhC-CCCcCC-CCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCc
Q 013316 10 RSAKPATIHGCAQSGDLLAFQRLLREN-PSLLNE-RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (445)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~-~~~~~~-~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~t 87 (445)
...|.||||+|+..|+.++++.|+... ..+++. .+. .|+||||+|+..|+.+++++|++++. +.+++.++..|.|
T Consensus 33 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~--~~~~~~~~~~g~t 109 (228)
T 2dzn_A 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD-SGWTPFHIACSVGNLEVVKSLYDRPL--KPDLNKITNQGVT 109 (228)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCT-TSCCHHHHHHHHCCHHHHHHHHSSSS--CCCTTCCCTTCCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCC-CCCCHHHHHHHcCCHHHHHHHHhCCC--CcccccCCcCCCC
Confidence 447999999999999999999888653 155555 554 79999999999999999999999621 2788999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhh-hhHHhhhhhhhhhhhH
Q 013316 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS-EEQRKRRALEACSETK 158 (445)
Q Consensus 88 pLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~-~~~~~~~~~~~~~~~~ 158 (445)
|||+|+..++.+++++|+++|++++.+|..|+||| |+|+..++.+++++|++.+ .+...++..+.++...
T Consensus 110 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~ 180 (228)
T 2dzn_A 110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPL-HRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 180 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHH
T ss_pred HHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHH-HHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHH
Confidence 99999999999999999999999999999999999 7788889999999999999 7766665555555443
No 124
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.82 E-value=1.9e-20 Score=174.29 Aligned_cols=134 Identities=23% Similarity=0.304 Sum_probs=119.9
Q ss_pred CCcc-CccCCC-CCchHhHHHH-----HcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCC
Q 013316 2 QKNQ-DRRSRS-AKPATIHGCA-----QSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND 74 (445)
Q Consensus 2 ~~~~-~~~~~~-~~~t~L~~A~-----~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~ 74 (445)
+.|+ +++..+ .|.||||+|+ ..++.++++.++.. +..++..+. .|+||||+|+..|+.+++++|++.
T Consensus 132 ~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~~-~g~tpLh~A~~~g~~~~v~~Ll~~---- 205 (276)
T 4hbd_A 132 DSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRL-GNINAKASQ-AGQTALMLAVSHGRVDVVKALLAC---- 205 (276)
T ss_dssp HTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHH-SCTTCCCTT-TCCCHHHHHHHTTCHHHHHHHHHT----
T ss_pred HCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHc-CCCccccCC-CCCCHHHHHHHcCCHHHHHHHHhC----
Confidence 3565 666666 6999999999 66899999988865 566777775 799999999999999999999995
Q ss_pred CcccccccCCCCcHHHHHHHcCCHHHHHHHHh-cCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhh
Q 013316 75 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHS 142 (445)
Q Consensus 75 g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~ 142 (445)
|+++|.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|+||| ++|...++.+++++|+++.
T Consensus 206 gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL-~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 206 EADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTAL-MVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHH-HHHHHcCCHHHHHHHHhcc
Confidence 89999999999999999999999999999999 8999999999999999 7888889999999998764
No 125
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.82 E-value=4e-20 Score=179.07 Aligned_cols=130 Identities=20% Similarity=0.238 Sum_probs=120.8
Q ss_pred CCchHhHHHHHcC--CHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcc-----cccccCC
Q 013316 12 AKPATIHGCAQSG--DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE-----LEAQNMY 84 (445)
Q Consensus 12 ~~~t~L~~A~~~g--~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~-----v~~~d~~ 84 (445)
.|.||||+||..| +.++++.|+.. +++++..+. .|+||||+|+..|+.+++++|+++ |++ ++.+|..
T Consensus 137 ~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~~~~~~ 210 (364)
T 3ljn_A 137 KGQTALHWCVGLGPEYLEMIKILVQL-GASPTAKDK-ADETPLMRAMEFRNREALDLMMDT----VPSKSSLRLDYANKQ 210 (364)
T ss_dssp SCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHH----CSCSSSCCTTCCCTT
T ss_pred CCCCHHHHHHHcCCchHHHHHHHHHc-CCCCcccCC-CCCCHHHHHHHcCCHHHHHHHHhc----ccccccccccccCCC
Confidence 6899999999999 99999988865 899999997 799999999999999999999985 555 9999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhh
Q 013316 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 148 (445)
Q Consensus 85 g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~ 148 (445)
|.||||+|+..|+.+++++|+++|++++.+|..|.||| ++|+..++.+++++|+.++++....
T Consensus 211 g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~~~~~~~~ 273 (364)
T 3ljn_A 211 GNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPL-YLSVRAAMVLLTKELLQKTDVFLIQ 273 (364)
T ss_dssp CCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHHHHTCCHHHHHHHHHHSCHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHhChHHHHHHHHHcCCchhhh
Confidence 99999999999999999999999999999999999999 8888899999999999998876443
No 126
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.82 E-value=5.3e-20 Score=176.65 Aligned_cols=138 Identities=30% Similarity=0.376 Sum_probs=126.5
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~ 91 (445)
.+.++||.||..|+.+.++.++...+.+++..+. .|+||||+|+..|+.+++++|++. |++++.+|..|.||||+
T Consensus 23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~ 97 (351)
T 3utm_A 23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASDG-RKSTPLHLAAGYNRVRIVQLLLQH----GADVHAKDKGGLVPLHN 97 (351)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSST-TCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHH
T ss_pred ccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCccCCCCCcHHHH
Confidence 4789999999999999999999988999999987 799999999999999999999995 88999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhh
Q 013316 92 AAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACS 155 (445)
Q Consensus 92 A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~ 155 (445)
|+..|+.+++++|+++|++++.+|..|.||| ++|+..++.+++++|+++++++...+..+.++
T Consensus 98 A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~ 160 (351)
T 3utm_A 98 ACSYGHYEVTELLLKHGACVNAMDLWQFTPL-HEAASKNRVEVCSLLLSHGADPTLVNCHGKSA 160 (351)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred HHHCCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCccccCCCCcc
Confidence 9999999999999999999999999999999 78888899999999999998876655444333
No 127
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.81 E-value=1.3e-19 Score=139.18 Aligned_cols=93 Identities=38% Similarity=0.555 Sum_probs=79.4
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~ 91 (445)
.|+||||+||..|+.++++.|+. .+.++|.++. .|+||||+|+..|+.+++++|++. |++++.+|..|.||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~n~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~----ga~~~~~d~~g~t~l~~ 74 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHL 74 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCccCCCCCCHHHH
Confidence 37889999999999998887775 5788888886 789999999999999999999985 78888889999999999
Q ss_pred HHHcCCHHHHHHHHhcCCC
Q 013316 92 AAKNGCNEAAKLLLAHGAF 110 (445)
Q Consensus 92 A~~~g~~~~~~~Ll~~ga~ 110 (445)
|+..|+.+++++|+++|++
T Consensus 75 A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 75 AARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HHHTTCHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHcCCC
Confidence 9999999999999988875
No 128
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.81 E-value=1.2e-20 Score=171.67 Aligned_cols=134 Identities=16% Similarity=0.109 Sum_probs=93.3
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 013316 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (445)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh 90 (445)
..|.||||.|+..|+.+.++.++. .|.+++... .|.||||+|+..|+.+++++|++. |++++.+|..|.||||
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~-~g~~~~~~~--~~~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~d~~g~t~L~ 75 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIA-HGMRVKFNP--LPLALLLDSSLEGEFDLVQRIIYE----VDDPSLPNDEGITALH 75 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTST----TSSCCCCCTTSCCHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhc-cCCCcccCc--hhhHHHHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHH
Confidence 468999999999999999998775 678888653 589999999999999999999985 8899999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhh
Q 013316 91 MAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALE 152 (445)
Q Consensus 91 ~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~ 152 (445)
+|+..|+.+++++|+++|++++.+|..|+||| |+|+..++.+++++|++++++....+..+
T Consensus 76 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL-~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~ 136 (239)
T 1ycs_B 76 NAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL-HCAASCNNVQVCKFLVESGAAVFAMTYSD 136 (239)
T ss_dssp HHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCSSS
T ss_pred HHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCcceecCCC
Confidence 99999999999999999999999999999999 78888999999999999999877665433
No 129
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.81 E-value=6.1e-20 Score=172.54 Aligned_cols=124 Identities=27% Similarity=0.333 Sum_probs=109.3
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcH
Q 013316 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (445)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tp 88 (445)
....+.||||+||..|+.++++.|+.. +.++|..+. .|+||||+||..|+.+++++|+++ |++++.+|..|.||
T Consensus 36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~tp 109 (299)
T 1s70_B 36 VKFDDGAVFLAACSSGDTEEVLRLLER-GADINYANV-DGLTALHQACIDDNVDMVKFLVEN----GANINQPDNEGWIP 109 (299)
T ss_dssp CEECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCH
T ss_pred cccCCccHHHHHHHcCCHHHHHHHHHc-CCCCcccCC-CCCCHHHHHHHcCCHHHHHHHHHC----CCCCCCCCCCCCcH
Confidence 344678999999999999999998865 788999987 799999999999999999999995 88999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHH
Q 013316 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLL 139 (445)
Q Consensus 89 Lh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll 139 (445)
||+|+..|+.+++++|+++|++++.++..|.||| ++|...+..++++.++
T Consensus 110 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~ll 159 (299)
T 1s70_B 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL-DIAEEEAMEELLQNEV 159 (299)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHCCSHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHH-HHHHhcchHHHHHHHH
Confidence 9999999999999999999999999998888888 6666666666655544
No 130
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.81 E-value=2.6e-19 Score=178.37 Aligned_cols=158 Identities=20% Similarity=0.292 Sum_probs=115.6
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcC---CCCCCCeEE
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTE 243 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~---~~~~~~~~~ 243 (445)
.++.++|++..++.+.+.+. .....++||+||||||||++|+++|+.+.... .+...+|+.
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~----------------r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLS----------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHH----------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred CCCCccCcHHHHHHHHHHHh----------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 35679999999888877543 23567899999999999999999999986422 233557888
Q ss_pred eecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhH
Q 013316 244 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM 320 (445)
Q Consensus 244 ~~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~ 320 (445)
++++ +.|.|..+..+..+|..+. ++||||| . ..++++.|+..++.+.+.+|++|+..++
T Consensus 242 l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~----------~~~a~~~L~~~L~~g~v~vI~at~~~e~ 303 (468)
T 3pxg_A 242 LDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSLARGELQCIGATTLDEY 303 (468)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCTTSSSCEEEEECCTTTT
T ss_pred eeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C----------chhHHHHHHHhhcCCCEEEEecCCHHHH
Confidence 8887 6677877777777777654 7999999 1 1156788999999999999999999987
Q ss_pred HHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcc
Q 013316 321 KRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 359 (445)
Q Consensus 321 ~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~ 359 (445)
...+..+|+|++||. .|.|+.|+.+++.+|++.++.+.
T Consensus 304 ~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~ 341 (468)
T 3pxg_A 304 RKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRY 341 (468)
T ss_dssp HHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTS
T ss_pred HHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHH
Confidence 776777999999995 69999999999999999887764
No 131
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.81 E-value=8.4e-20 Score=174.83 Aligned_cols=134 Identities=21% Similarity=0.226 Sum_probs=121.1
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCc----HHHHHHhhcCCCCCCcccccccCCCCc
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK----AEIVKSLLEWPGNDKVELEAQNMYGET 87 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~g~~v~~~d~~g~t 87 (445)
.|.||||+||..|+.++++.||...|+++|..+. .|.|++|+++..++ ..++++|+++ |+++|.+|..|.|
T Consensus 167 ~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~-~g~t~l~~~~~~~~~~~~~~i~~lLl~~----gad~n~~d~~g~t 241 (337)
T 4g8k_A 167 GGATALMDAAEKGHVEVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDH----GADVNVRGERGKT 241 (337)
T ss_dssp CSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCT-TSCCHHHHHHHHSCTTTHHHHHHHHHHT----TCCTTCCCGGGCC
T ss_pred CCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCC-CCCcHHHHHHHHcCcccHHHHHHHHHHC----CCCCCCcCCCCCC
Confidence 5899999999999999999999888999999997 79999998775543 4688999995 8999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHh-cCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhh
Q 013316 88 PLHMAAKNGCNEAAKLLLA-HGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRAL 151 (445)
Q Consensus 88 pLh~A~~~g~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~ 151 (445)
|||+|+..|+.+++++|+. .|++++.+|.+|+||| |+|+..++.+++++|+++|++++.++++
T Consensus 242 ~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL-~~A~~~g~~~iv~~Ll~~GAd~n~~~~L 305 (337)
T 4g8k_A 242 PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL-LLAVELKLKKIAELLCKRGASTDCGDLV 305 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHH-HHHHHTTCHHHHHHHHTTSCSSTTCCHH
T ss_pred HHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCCCHH
Confidence 9999999999999999997 5899999999999999 8888899999999999999988766543
No 132
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.80 E-value=1.2e-19 Score=176.32 Aligned_cols=154 Identities=18% Similarity=0.163 Sum_probs=132.2
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~ 80 (445)
+.|++++..+ .|.||||+||..|+.++++.|+. .|++++..+. .|.||||+|+..|+.+++++|++.+. .+++++.
T Consensus 154 ~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~ 230 (373)
T 2fo1_E 154 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK-AGADPTIYNK-SERSALHQAAANRDFGMMVYMLNSTK-LKGDIEE 230 (373)
T ss_dssp HTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCT-TCCCHHHHHHHTTCHHHHHHHTTSHH-HHHTTSC
T ss_pred hcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHH-CCCCCcccCC-CCCCHHHHHHHCCCHHHHHHHHhcCc-cccChhh
Confidence 5688888876 69999999999999999998875 6899999987 79999999999999999999998510 0178899
Q ss_pred ccCCCCcHHHHHHHcC---CHHHHHHHHhcCCCCcc--------cccCCCChhhhhhcCCCChHHHHHHHhhh-hhHHhh
Q 013316 81 QNMYGETPLHMAAKNG---CNEAAKLLLAHGAFIEA--------KANEGKTPLDHLSNGPGSAKLRELLLWHS-EEQRKR 148 (445)
Q Consensus 81 ~d~~g~tpLh~A~~~g---~~~~~~~Ll~~ga~~~~--------~~~~g~tpl~~~a~~~~~~~i~~~ll~~~-~~~~~~ 148 (445)
.|..|.||||+|+..+ +.+++++|+++|++++. +|..|.||| |+|+..++.+++++|+..+ .+.+.+
T Consensus 231 ~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~L-h~A~~~g~~~~v~~Ll~~~~~~~n~~ 309 (373)
T 2fo1_E 231 LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL-HYAAQVSNMPIVKYLVGEKGSNKDKQ 309 (373)
T ss_dssp CCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH-HHHHSSCCHHHHHHHHHHSCCCTTCC
T ss_pred cCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHH-HHHHHhCCHHHHHHHHHhcCCCccCc
Confidence 9999999999999998 89999999999999986 677999999 8888899999999999876 777666
Q ss_pred hhhhhhhhhHH
Q 013316 149 RALEACSETKA 159 (445)
Q Consensus 149 ~~~~~~~~~~a 159 (445)
+..+.++...+
T Consensus 310 d~~g~TpL~~A 320 (373)
T 2fo1_E 310 DEDGKTPIMLA 320 (373)
T ss_dssp CTTCCCHHHHH
T ss_pred CCCCCCHHHHH
Confidence 65555554443
No 133
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.80 E-value=5.2e-19 Score=165.31 Aligned_cols=239 Identities=10% Similarity=0.028 Sum_probs=147.4
Q ss_pred hhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC---CCCCCeEEeecc
Q 013316 171 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTEVQRT 247 (445)
Q Consensus 171 l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~---~~~~~~~~~~~~ 247 (445)
|.|.++-...|...+.... ....+.+++|+||||||||++++.+++.+..... +..-.++.++|.
T Consensus 22 L~~Re~E~~~i~~~L~~~i------------~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~ 89 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSL------------MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL 89 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT
T ss_pred cCCHHHHHHHHHHHHHHHh------------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc
Confidence 5666655555555443331 1457889999999999999999999999975321 112357888887
Q ss_pred cccc----------cccCC------chhHHHHHHHHc-----cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhc--
Q 013316 248 DLVG----------EFVGH------TGPKTRRRIKEA-----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM-- 304 (445)
Q Consensus 248 ~l~~----------~~~g~------~~~~~~~~~~~a-----~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~-- 304 (445)
.+.+ ++.|+ +...+.+.|... ...|+||||||.+. .+ +++..|+...
T Consensus 90 ~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q--------~~L~~l~~~~~~ 159 (318)
T 3te6_A 90 ELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SE--------KILQYFEKWISS 159 (318)
T ss_dssp CCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CT--------HHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cc--------hHHHHHHhcccc
Confidence 6432 23333 455677778753 24799999999998 22 5555555543
Q ss_pred cCCcEEEEEecCchhHHHHHhhCcccccccc-cceeCCCCCHHHHHHHHHHHHhccccc-c---cc--------------
Q 013316 305 DGGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTED-S---LL-------------- 365 (445)
Q Consensus 305 ~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~-~---~~-------------- 365 (445)
+..++++|+.++..+... ...++++++||. ..|.|++|+.+|+.+|+++.+...... + +.
T Consensus 160 ~~s~~~vI~i~n~~d~~~-~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~ 238 (318)
T 3te6_A 160 KNSKLSIICVGGHNVTIR-EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQ 238 (318)
T ss_dssp SSCCEEEEEECCSSCCCH-HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC----
T ss_pred cCCcEEEEEEecCcccch-hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccc
Confidence 456788887665432211 112688899996 689999999999999999999875321 0 00
Q ss_pred -----ccc-ccCCcccHHHHHHHHHH---HHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHH
Q 013316 366 -----YGF-KLHSSCSMDAIAALIEK---ETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAG 436 (445)
Q Consensus 366 -----~~~-~~~~~~~~~~l~~~~~~---~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a 436 (445)
.++ .....++++++. ++++ ..+||+|. .-+++++|...............++...||.+.+..+
T Consensus 239 ~~~~~~~~~~~~~~i~~~ai~-~~A~~vA~~~GD~R~------Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~ 311 (318)
T 3te6_A 239 NQKIPDNVIVINHKINNKITQ-LIAKNVANVSGSTEK------AFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRY 311 (318)
T ss_dssp ----CTTEEEECEECCHHHHH-HHHHHHHHHHCSHHH------HHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHH
T ss_pred cccccccccccccccCHHHHH-HHHHHHHhhCChHHH------HHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHH
Confidence 000 112246777877 5444 34455554 4455555554433322111111245567777777766
Q ss_pred HHH
Q 013316 437 LKL 439 (445)
Q Consensus 437 ~~~ 439 (445)
+.+
T Consensus 312 ~~~ 314 (318)
T 3te6_A 312 FSE 314 (318)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 134
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.80 E-value=2.1e-19 Score=178.32 Aligned_cols=150 Identities=27% Similarity=0.376 Sum_probs=118.9
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~ 80 (445)
++|++++... .|.||||+|+..|+.++++.|+. .+.+++..+. .|.||||+|+..|+.+++++|++. +++++.
T Consensus 200 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~ 273 (437)
T 1n11_A 200 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ-YGGSANAESV-QGVTPLHLAAQEGHAEMVALLLSK----QANGNL 273 (437)
T ss_dssp GGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHTT----TCCTTC
T ss_pred hCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCC-CCCCHHHHHHHCCCHHHHHHHHhc----CCCCCC
Confidence 3455665544 57788888888888888877664 5677777775 688888888888888888888884 778888
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhH
Q 013316 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETK 158 (445)
Q Consensus 81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~ 158 (445)
.+..|.||||+|+..|+.+++++|+++|++++.++..|+||| |+|+..++.+++++|++++++++.++..+.++...
T Consensus 274 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~ 350 (437)
T 1n11_A 274 GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPL-HVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ 350 (437)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHH-HHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHH-HHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 888888888888888888888888888888888888889998 77777888888898888888877766555555443
No 135
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.80 E-value=2.2e-18 Score=182.59 Aligned_cols=243 Identities=16% Similarity=0.202 Sum_probs=170.2
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC---CCCCCeEE
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTE 243 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~---~~~~~~~~ 243 (445)
.|+.++|.++.++++.+.+. .....+++|+||||||||++|+++++.+..... +....++.
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~----------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~ 247 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLC----------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred CCCCccCCHHHHHHHHHHHh----------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE
Confidence 46679999988877776432 235678999999999999999999999865322 22346777
Q ss_pred eeccccc--ccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCch
Q 013316 244 VQRTDLV--GEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE 318 (445)
Q Consensus 244 ~~~~~l~--~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~ 318 (445)
++.+.+. ..+.|..+..+..+|+.+. ++||||||+|.+.+.++.. ....++.+.|...++.+.+.+|++++..
T Consensus 248 ~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~--~~~~~~~~~L~~~l~~~~~~~I~at~~~ 325 (758)
T 1r6b_X 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAANLIKPLLSSGKIRVIGSTTYQ 325 (758)
T ss_dssp CCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS--SCHHHHHHHHSSCSSSCCCEEEEEECHH
T ss_pred EcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC--cchHHHHHHHHHHHhCCCeEEEEEeCch
Confidence 7777765 3577888888888887664 5999999999998765432 1234667778888888999999999988
Q ss_pred hHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCch
Q 013316 319 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG 398 (445)
Q Consensus 319 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r 398 (445)
.+...+..||+|.+||. .+.|+.|+.+++.+|++..+...... ....++++++..+. ..+.+.........
T Consensus 326 ~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~-------~~v~~~~~al~~~~-~~s~~~i~~~~lp~ 396 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAH-------HDVRYTAKAVRAAV-ELAVKYINDRHLPD 396 (758)
T ss_dssp HHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHH-------HTCCCCHHHHHHHH-HHHHHHCTTSCTTH
T ss_pred HHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHh-------cCCCCCHHHHHHHH-HHhhhhcccccCch
Confidence 77666667899999996 79999999999999999877653211 12345566666444 44444444444445
Q ss_pred hhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316 399 LVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 441 (445)
Q Consensus 399 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 441 (445)
.+..+++++........ .......|+.+||.+++..+.
T Consensus 397 ~~i~lld~a~~~~~~~~-----~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 397 KAIDVIDEAGARARLMP-----VSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHHHHSS-----SCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhccc-----ccccCCccCHHHHHHHHHHhc
Confidence 56777777644332211 011234689999998887654
No 136
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.79 E-value=1.5e-19 Score=138.81 Aligned_cols=92 Identities=43% Similarity=0.630 Sum_probs=86.2
Q ss_pred CCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhh
Q 013316 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLS 126 (445)
Q Consensus 47 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a 126 (445)
+|+||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||| ++|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l-~~A 75 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL-HLA 75 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHc----CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH-HHH
Confidence 389999999999999999999995 889999999999999999999999999999999999999999999999 788
Q ss_pred cCCCChHHHHHHHhhhh
Q 013316 127 NGPGSAKLRELLLWHSE 143 (445)
Q Consensus 127 ~~~~~~~i~~~ll~~~~ 143 (445)
...++.+++++|+++|+
T Consensus 76 ~~~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 76 ARNGHLEVVKLLLEAGA 92 (93)
T ss_dssp HHTTCHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHcCC
Confidence 88899999999998875
No 137
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.79 E-value=3.6e-19 Score=165.53 Aligned_cols=147 Identities=23% Similarity=0.225 Sum_probs=96.0
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~ 80 (445)
++|++++..+ .|.||||+|+..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|++. |++++.
T Consensus 60 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~ 133 (285)
T 1wdy_A 60 RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS-KGADVNECDF-YGFTAFMEAAVYGKVKALKFLYKR----GANVNL 133 (285)
T ss_dssp HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHT----TCCTTC
T ss_pred HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCc-ccCCHHHHHHHhCCHHHHHHHHHh----CCCccc
Confidence 4566666554 57777777777777777776664 4667777665 577777777777777777777774 555555
Q ss_pred c----------cCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCcccccCCCChhhhhhcCCCC----hHHHHHHHhhhhhH
Q 013316 81 Q----------NMYGETPLHMAAKNGCNEAAKLLLAH-GAFIEAKANEGKTPLDHLSNGPGS----AKLRELLLWHSEEQ 145 (445)
Q Consensus 81 ~----------d~~g~tpLh~A~~~g~~~~~~~Ll~~-ga~~~~~~~~g~tpl~~~a~~~~~----~~i~~~ll~~~~~~ 145 (445)
. +..|.||||+|+..|+.+++++|++. |++++.++..|.||| +.+...+. .+++++|++++.+.
T Consensus 134 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 134 RRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp CCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCS
T ss_pred ccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCC
Confidence 4 56667777777777777777777765 777777777777776 44444444 56666666666655
Q ss_pred Hhhhhhhhhh
Q 013316 146 RKRRALEACS 155 (445)
Q Consensus 146 ~~~~~~~~~~ 155 (445)
..++..+.++
T Consensus 213 ~~~~~~g~t~ 222 (285)
T 1wdy_A 213 NVRGERGKTP 222 (285)
T ss_dssp SCCCTTSCCH
T ss_pred CCcCCCCCcH
Confidence 5444333333
No 138
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.79 E-value=4.3e-19 Score=165.10 Aligned_cols=124 Identities=23% Similarity=0.270 Sum_probs=112.3
Q ss_pred chHhHHHHHcCCHHHHHHHHhhCCCCcC------CCCCCCCChHHHHHHhC---CcHHHHHHhhcCCCCCCcccccccCC
Q 013316 14 PATIHGCAQSGDLLAFQRLLRENPSLLN------ERNPVMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQNMY 84 (445)
Q Consensus 14 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~------~~~~~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~g~~v~~~d~~ 84 (445)
.++|+.|+..|+.+.+..++.. +.+++ ..+. .|+||||+|+.. |+.+++++|+++ |+++|.+|..
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~-~g~t~Lh~A~~~~~~~~~~~v~~Ll~~----ga~in~~d~~ 204 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHE-PDETALHLAVRSVDRTSLHIVDFLVQN----SGNLDKQTGK 204 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSS-TTCBHHHHHHHHCCTTTHHHHHHHHHH----CSCTTCCCTT
T ss_pred hhhhhhHhhhcccHHHHHHHHh-hcchhhhcccccccc-CCCCcchHHHHhcccchHHHHHHHHHC----CCCccccCCC
Confidence 4689999999999999988764 56643 3455 699999999999 899999999995 8999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144 (445)
Q Consensus 85 g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~ 144 (445)
|.||||+|+..|+.+++++|+++|++++.+|..|.||| ++|...++.+++++|++++++
T Consensus 205 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL-~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 205 GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPL-DIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHH-HHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999 788888999999999988875
No 139
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.79 E-value=1.8e-19 Score=144.20 Aligned_cols=107 Identities=34% Similarity=0.439 Sum_probs=96.4
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 013316 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (445)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpL 89 (445)
...|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..++.+++++|+++ |++++.+|..|.|||
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~d~~g~tpl 79 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLS-KGADVNARSK-DGNTPLHLAAKNGHAEIVKLLLAK----GADVNARSKDGNTPE 79 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTT-TTCCSSCCCS-SSCCTTHHHHTTTCHHHHHHHTTT----TCCTTCCCTTCCCTT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHHc----CCCCcccCCCCCCHH
Confidence 4579999999999999999987775 5788999986 799999999999999999999995 889999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCcccccCCCChh
Q 013316 90 HMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122 (445)
Q Consensus 90 h~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl 122 (445)
|+|+..++.+++++|+++|++++.++..|.+|-
T Consensus 80 ~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 80 HLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 999999999999999999999999999999885
No 140
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.79 E-value=4e-19 Score=167.20 Aligned_cols=125 Identities=22% Similarity=0.262 Sum_probs=115.1
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCcCC------CCCCCCChHHHHHHhC---CcHHHHHHhhcCCCCCCcccccccC
Q 013316 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNE------RNPVMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQNM 83 (445)
Q Consensus 13 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~------~~~~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~g~~v~~~d~ 83 (445)
..++||.|+..|+.+.++.++ ..+.+++. .+. .|+||||+|+.. ++.+++++|+++ |+++|.+|.
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll-~~g~d~~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~~~iv~~Ll~~----gadvn~~d~ 224 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAF-ANGQDFGQPLPGPDAQA-PEELVLHLAVKVANQASLPLVDFIIQN----GGHLDAKAA 224 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHH-HTTCCTTSCEECSSSCS-CEECHHHHHHHTCCTTTHHHHHHHHHH----SSCTTCCCT
T ss_pred hHHHHhhhhhccCHHHHHHHH-hcCCcccccCCCcccCC-CCccHHHHHHHhcccCcHHHHHHHHhc----CCCCCCCCC
Confidence 567899999999999999888 46788887 454 799999999997 899999999995 899999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316 84 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144 (445)
Q Consensus 84 ~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~ 144 (445)
.|.||||+|+..|+.+++++|+++|++++.+|..|.||| ++|...++.+++++|+.++++
T Consensus 225 ~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL-~~A~~~~~~~iv~~Ll~~ga~ 284 (301)
T 2b0o_E 225 DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETAL-DIARKKHHKECEELLEQAQAG 284 (301)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHH-HHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999 788888999999999998876
No 141
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.79 E-value=6.2e-20 Score=178.41 Aligned_cols=151 Identities=19% Similarity=0.233 Sum_probs=126.4
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCC--CCcCCCCCCCCChHHHHHHhCC---cHHHHHHhhcCCCCCC
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENP--SLLNERNPVMAQTPLHVSAGYN---KAEIVKSLLEWPGNDK 75 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~--~~~~~~~~~~g~tpLh~A~~~g---~~~iv~~Ll~~~~~~g 75 (445)
++|++++..+ .|.||||+||..|+.++++.|+.... .+++..+. .|+||||+|+..+ +.+++++|++. |
T Consensus 187 ~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~-~g~t~L~~A~~~~~~~~~~~v~~Ll~~----g 261 (373)
T 2fo1_E 187 KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR-NGMTALMIVAHNEGRDQVASAKLLVEK----G 261 (373)
T ss_dssp HTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT-TSCCHHHHHHHSCSTTHHHHHHHHHHH----T
T ss_pred HCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCC-CCCCHHHHHHHhCCcchHHHHHHHHHC----C
Confidence 5678888766 69999999999999999988875421 67888886 7999999999988 89999999985 6
Q ss_pred ccccc--------ccCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHH
Q 013316 76 VELEA--------QNMYGETPLHMAAKNGCNEAAKLLLAHG-AFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 146 (445)
Q Consensus 76 ~~v~~--------~d~~g~tpLh~A~~~g~~~~~~~Ll~~g-a~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~ 146 (445)
++++. .|..|.||||+|+..|+.+++++|++.| ++++.+|..|+||| |+|+..++.+++++|++++++..
T Consensus 262 ~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL-~~A~~~g~~~iv~~Ll~~gad~~ 340 (373)
T 2fo1_E 262 AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI-MLAAQEGRIEVVMYLIQQGASVE 340 (373)
T ss_dssp CCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHHTTCCSS
T ss_pred CCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCcc
Confidence 67765 5678999999999999999999999765 99999999999999 77888899999999999998877
Q ss_pred hhhhhhhhhhhH
Q 013316 147 KRRALEACSETK 158 (445)
Q Consensus 147 ~~~~~~~~~~~~ 158 (445)
.++..+.++...
T Consensus 341 ~~d~~g~t~l~~ 352 (373)
T 2fo1_E 341 AVDATDHTARQL 352 (373)
T ss_dssp CCCSSSCCHHHH
T ss_pred CCCCCCCCHHHH
Confidence 766555555443
No 142
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.79 E-value=2.5e-18 Score=159.57 Aligned_cols=198 Identities=12% Similarity=0.169 Sum_probs=129.7
Q ss_pred hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316 170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 249 (445)
Q Consensus 170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l 249 (445)
.++|+++..+.+........... .. ....++.++||+||||||||++|+++|+.++. +|+.+++++
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l--~~----~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~-------~~~~i~~~~- 99 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQT--KN----SDRTPLVSVLLEGPPHSGKTALAAKIAEESNF-------PFIKICSPD- 99 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHH--HH----CSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC-------SEEEEECGG-
T ss_pred CCCCccHHHHHHHHHHHHHHHHH--hc----cCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEeCHH-
Confidence 36777776666655211111000 00 12346678999999999999999999999765 888888875
Q ss_pred cccccCCch----hHHHHHHHHc---cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-----CcEEEEEecCc
Q 013316 250 VGEFVGHTG----PKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYS 317 (445)
Q Consensus 250 ~~~~~g~~~----~~~~~~~~~a---~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~i~a~~~ 317 (445)
.++|... ..++.+|..+ .++||||||||.+.+.+..+ .......++.|...++. ..+++|++++.
T Consensus 100 --~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~ 176 (272)
T 1d2n_A 100 --KMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSR 176 (272)
T ss_dssp --GCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESC
T ss_pred --HhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCC
Confidence 4555543 3456677654 46999999999997654322 22334566667776653 34566666665
Q ss_pred hhHHHHHhhCc-ccccccccceeCCCCCH-HHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316 318 EPMKRVIASNE-GFCRRVTKFFHFNDFNS-EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 395 (445)
Q Consensus 318 ~~~~~~~~~~~-~l~~R~~~~i~~~~~~~-~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 395 (445)
.... ++ .+++||+..+.||+++. +++..++... ..++++.+..+.. .+.+ ..+++
T Consensus 177 ~~~l-----~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~----------------~~~~~~~~~~l~~-~~~g-~~~~g 233 (272)
T 1d2n_A 177 KDVL-----QEMEMLNAFSTTIHVPNIATGEQLLEALELL----------------GNFKDKERTTIAQ-QVKG-KKVWI 233 (272)
T ss_dssp HHHH-----HHTTCTTTSSEEEECCCEEEHHHHHHHHHHH----------------TCSCHHHHHHHHH-HHTT-SEEEE
T ss_pred hhhc-----chhhhhcccceEEcCCCccHHHHHHHHHHhc----------------CCCCHHHHHHHHH-HhcC-CCccc
Confidence 5432 34 67889999999999986 6766666541 1234556554443 3322 33578
Q ss_pred CchhhHHHHHHH
Q 013316 396 NGGLVDPMLVNA 407 (445)
Q Consensus 396 n~r~l~~~~~~~ 407 (445)
|.|++.++++.+
T Consensus 234 ~ir~l~~~l~~a 245 (272)
T 1d2n_A 234 GIKKLLMLIEMS 245 (272)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 999999999988
No 143
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.79 E-value=7.6e-18 Score=150.98 Aligned_cols=202 Identities=23% Similarity=0.236 Sum_probs=137.9
Q ss_pred HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 013316 168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 247 (445)
Q Consensus 168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~ 247 (445)
+++++|.+..++.+.+++.. ....+++|+||||||||++|+.+++.+...+. ...++.++++
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~----------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~--~~~~~~~~~~ 77 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVER----------------KNIPHLLFSGPPGTGKTATAIALARDLFGENW--RDNFIEMNAS 77 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHT----------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGG--GGGEEEEETT
T ss_pred HHHHcCcHHHHHHHHHHHhC----------------CCCCeEEEECCCCCCHHHHHHHHHHHHhcccc--ccceEEeccc
Confidence 56799999998888876542 23446999999999999999999998754211 1257777765
Q ss_pred cccccccCCchhHHHHHHH-----HccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhH
Q 013316 248 DLVGEFVGHTGPKTRRRIK-----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPM 320 (445)
Q Consensus 248 ~l~~~~~g~~~~~~~~~~~-----~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~ 320 (445)
...+.. .....+..... ...+++|||||+|.+.+ ..++.|+..++. ....+|++++...
T Consensus 78 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~~~~~~~~i~~~~~~~- 143 (226)
T 2chg_A 78 DERGID--VVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEMYSKSCRFILSCNYVS- 143 (226)
T ss_dssp CTTCHH--HHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHTTTTEEEEEEESCGG-
T ss_pred cccChH--HHHHHHHHHhcccCCCccCceEEEEeChhhcCH-----------HHHHHHHHHHHhcCCCCeEEEEeCChh-
Confidence 532210 00011111221 13568999999999875 445666666653 4566666655432
Q ss_pred HHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhh
Q 013316 321 KRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLV 400 (445)
Q Consensus 321 ~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l 400 (445)
..++++.+||. .+.|++|+.+++.+++..++.+.. ..++++++..+. ..+ .||.|.+
T Consensus 144 ----~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~l~-~~~------~g~~r~l 200 (226)
T 2chg_A 144 ----RIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEG-----------VKITEDGLEALI-YIS------GGDFRKA 200 (226)
T ss_dssp ----GSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHHHHHH-HHH------TTCHHHH
T ss_pred ----hcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHH-HHc------CCCHHHH
Confidence 23788999995 899999999999999998876531 235566666444 555 7889999
Q ss_pred HHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316 401 DPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 438 (445)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~ 438 (445)
.++++.+.... ..|+.+|+.++++
T Consensus 201 ~~~l~~~~~~~--------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 201 INALQGAAAIG--------------EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHTC--------------SCBCHHHHHHHHH
T ss_pred HHHHHHHHhcC--------------ceecHHHHHHHhc
Confidence 99998873221 2799999998876
No 144
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.79 E-value=5.1e-19 Score=160.27 Aligned_cols=141 Identities=18% Similarity=0.228 Sum_probs=77.9
Q ss_pred CccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccc
Q 013316 3 KNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (445)
Q Consensus 3 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~ 81 (445)
.|++++..+ .|.||||+|+..|+.++++.|+.. +.+++......|+||||+|+..|+.+++++|++. |++++.+
T Consensus 31 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~ 105 (240)
T 3eu9_A 31 AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK-GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY----GADPSLI 105 (240)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHT----TCCTTCC
T ss_pred cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHc-CCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHc----CCCCccc
Confidence 344444433 455666666666666666555543 3333333322355666666666666666666653 5555555
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhh
Q 013316 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 148 (445)
Q Consensus 82 d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~ 148 (445)
+..|.||||+|+..|+.+++++|+++|++++.++..|.|||++++......+++++|+..+.+....
T Consensus 106 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~ 172 (240)
T 3eu9_A 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG 172 (240)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCC
T ss_pred CCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchh
Confidence 6666666666666666666666666666666666666666633332344455566665555554433
No 145
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.78 E-value=9.1e-19 Score=168.59 Aligned_cols=232 Identities=17% Similarity=0.154 Sum_probs=140.2
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCC--------
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-------- 238 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~-------- 238 (445)
.|++++|++.++..+.... . .....++||+||||||||++|+++|+.+........
T Consensus 22 ~f~~i~G~~~~~~~l~~~~--~--------------~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTA--V--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHH--H--------------CGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CchhccChHHHHHHHHHHh--h--------------CCCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 4677999998766543211 1 123457999999999999999999998753100000
Q ss_pred ------------------CCeEEeecccccccccCCch--hH--------HHHHHHHccCcEEEEcCccccccCCCCCCc
Q 013316 239 ------------------DRVTEVQRTDLVGEFVGHTG--PK--------TRRRIKEAEGGILFVDEAYRLIPMQKADDK 290 (445)
Q Consensus 239 ------------------~~~~~~~~~~l~~~~~g~~~--~~--------~~~~~~~a~~~il~lDEid~l~~~~~~~~~ 290 (445)
.+++.+........++|... .. ....+..+.++||||||||.+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~------- 158 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED------- 158 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH-------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH-------
Confidence 12222222211222333210 00 01234455689999999999876
Q ss_pred hhHHHHHHHHHhhccCC---------------cEEEEEecCchhHHHHHhhCcccccccccceeCCCC-CHHHHHHHHHH
Q 013316 291 DYGIEALEEIMSVMDGG---------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDF-NSEELAKILHI 354 (445)
Q Consensus 291 ~~~~~~~~~ll~~~~~~---------------~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~-~~~~~~~il~~ 354 (445)
+.++.|+..++.+ ++++|+++++... ..+++|++||+..+.+++| +.+++.+|+++
T Consensus 159 ----~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~----~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 159 ----HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEG----DLRPQLLDRFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp ----HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSC----CCCHHHHTTCSEEEECCCCCSHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCC----CCCHHHHhhcceEEEcCCCCcHHHHHHHHHH
Confidence 6677888877653 5788888775331 2379999999888999999 57777788877
Q ss_pred HHhcccc-----------------ccc-ccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhc
Q 013316 355 KMNNQTE-----------------DSL-LYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLS 416 (445)
Q Consensus 355 ~l~~~~~-----------------~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~ 416 (445)
.+..... ... .........++++++..+....|++.. .+.|.+.++++.+.......
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~---~~~R~~~~ll~~a~~~A~~~-- 305 (350)
T 1g8p_A 231 RDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGS---DGLRGELTLLRSARALAALE-- 305 (350)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSS---CSHHHHHHHHHHHHHHHHHT--
T ss_pred HHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCC---CCccHHHHHHHHHHHHHHHc--
Confidence 4321100 000 000001125677888877777663211 13588888888774432221
Q ss_pred cCCCChhhhhhccHHHHHHHHHHHH
Q 013316 417 FDCLDTDELRTITLEDLEAGLKLLL 441 (445)
Q Consensus 417 ~~~~~~~~~~~i~~~d~~~a~~~~~ 441 (445)
+...|+.+|+.+++..+.
T Consensus 306 -------~~~~v~~~~v~~a~~~~l 323 (350)
T 1g8p_A 306 -------GATAVGRDHLKRVATMAL 323 (350)
T ss_dssp -------TCSBCCHHHHHHHHHHHH
T ss_pred -------CCCcCCHHHHHHHHHHHH
Confidence 223699999999887653
No 146
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.78 E-value=6.4e-19 Score=169.77 Aligned_cols=125 Identities=24% Similarity=0.256 Sum_probs=115.2
Q ss_pred CchHhHHHHHc-CCHHHHHHHHhhCCCCcCCCC--CCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 013316 13 KPATIHGCAQS-GDLLAFQRLLRENPSLLNERN--PVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (445)
Q Consensus 13 ~~t~L~~A~~~-g~~~~v~~ll~~~~~~~~~~~--~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpL 89 (445)
+.|+||+|+.. |+.++++.|+. .++++|..+ . .|+||||+|+..|+.+++++|+++ |+++|.+|..|.|||
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~-~Gadvn~~~~~~-~g~TpLh~Aa~~g~~~iv~~LL~~----Gadvn~~d~~G~TpL 272 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALA-HGADVNWVNGGQ-DNATPLIQATAANSLLACEFLLQN----GANVNQADSAGRGPL 272 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHH-TTCCTTCCCTTT-TCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHH-cCCCCCcccccc-CCCCHHHHHHHCCCHHHHHHHHHc----CCCCCCCCCCCCCHH
Confidence 45799999999 99999998885 688999887 4 799999999999999999999995 899999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316 90 HMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144 (445)
Q Consensus 90 h~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~ 144 (445)
|+|+..|+.+++++|+++|++++.+|.+|.||| ++|...++.+++++|+..+..
T Consensus 273 h~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL-~~A~~~g~~~iv~lLl~~~~~ 326 (368)
T 3jue_A 273 HHATILGHTGLACLFLKRGADLGARDSEGRDPL-TIAMETANADIVTLLRLAKMR 326 (368)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHH-HHHHHCCCHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999 788888999999999877643
No 147
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.78 E-value=1e-18 Score=166.48 Aligned_cols=185 Identities=18% Similarity=0.141 Sum_probs=133.0
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|++.+++.+.+++.. ...+..+|++||||||||++|+++++.++. +++.+++
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~---------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~-------~~~~i~~ 81 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSK---------------GKIPHIILHSPSPGTGKTTVAKALCHDVNA-------DMMFVNG 81 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHT---------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTE-------EEEEEET
T ss_pred CHHHHhCcHHHHHHHHHHHHc---------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-------CEEEEcc
Confidence 467899999999988886651 234566788899999999999999998865 8899998
Q ss_pred ccccccccCCchhHHHHHHHH---c-----cCcEEEEcCccccc-cCCCCCCchhHHHHHHHHHhhccC--CcEEEEEec
Q 013316 247 TDLVGEFVGHTGPKTRRRIKE---A-----EGGILFVDEAYRLI-PMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG 315 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~---a-----~~~il~lDEid~l~-~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~ 315 (445)
++.. ...++..+.. . .++||||||+|.+. . +.++.|+..++. ..+.+|+++
T Consensus 82 ~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~-----------~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 82 SDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLA-----------ESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp TTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGH-----------HHHHHHHHHHHHHGGGCEEEEEE
T ss_pred cccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcH-----------HHHHHHHHHHHhCCCCcEEEEEe
Confidence 7642 2333333322 1 45899999999997 4 567778887775 456677766
Q ss_pred CchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccH-HHHHHHHHHHHHHhhhcc
Q 013316 316 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSM-DAIAALIEKETTEKQRRE 394 (445)
Q Consensus 316 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ 394 (445)
+... ..++++++|| ..+.|++|+.+++.+|++.++..........++. +++ +++..+ ...+ .
T Consensus 144 n~~~-----~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~----~~~~~~~~~l-~~~~------~ 206 (324)
T 3u61_B 144 NNID-----GIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIA----IADMKVVAAL-VKKN------F 206 (324)
T ss_dssp SSGG-----GSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCC----BSCHHHHHHH-HHHT------C
T ss_pred CCcc-----ccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCC----CCcHHHHHHH-HHhC------C
Confidence 6544 2489999999 6799999999999888877666544333333333 333 566644 4555 6
Q ss_pred cCchhhHHHHHHHH
Q 013316 395 MNGGLVDPMLVNAR 408 (445)
Q Consensus 395 ~n~r~l~~~~~~~~ 408 (445)
||.|.+.+.++.+.
T Consensus 207 gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 207 PDFRKTIGELDSYS 220 (324)
T ss_dssp SCTTHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHh
Confidence 78888888888874
No 148
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.78 E-value=1.2e-19 Score=153.62 Aligned_cols=114 Identities=17% Similarity=0.184 Sum_probs=92.0
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCCh-HHHHHHhCCcHHHHHHhhcCCCCCCcccc
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQT-PLHVSAGYNKAEIVKSLLEWPGNDKVELE 79 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t-pLh~A~~~g~~~iv~~Ll~~~~~~g~~v~ 79 (445)
++|++++..+ .|.||||+|+ .|+.++++.|+. .+.+++..+. .|+| |||+|+..|+.+++++|+++ |++++
T Consensus 33 ~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~-~g~~~~~~d~-~g~ttpL~~A~~~~~~~~v~~Ll~~----ga~~~ 105 (156)
T 1bi7_B 33 EAGANPNAPNSYGRRPIQVMM-MGSARVAELLLL-HGAEPNCADP-ATLTRPVHDAAREGFLDTLVVLHRA----GARLD 105 (156)
T ss_dssp TTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHT-TTCCCCCCCT-TTCCCHHHHHHHHTCHHHHHHHHHH----TCCSS
T ss_pred HcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHH-cCCCCCCcCC-CCCcHHHHHHHHCCCHHHHHHHHHc----CCCCc
Confidence 5688888776 6999999986 899999998875 5899999997 7998 99999999999999999995 89999
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChh
Q 013316 80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122 (445)
Q Consensus 80 ~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl 122 (445)
.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||.
T Consensus 106 ~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~ 148 (156)
T 1bi7_B 106 VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAA 148 (156)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------------
T ss_pred ccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCccc
Confidence 9999999999999999999999999999999999999999998
No 149
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.78 E-value=6.5e-19 Score=168.63 Aligned_cols=136 Identities=21% Similarity=0.247 Sum_probs=117.4
Q ss_pred CccCccCCC-CCchHhHHHHHcC---CHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccc
Q 013316 3 KNQDRRSRS-AKPATIHGCAQSG---DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL 78 (445)
Q Consensus 3 ~~~~~~~~~-~~~t~L~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v 78 (445)
.|++++..+ .|.|++|+++..+ +.+.+.++|...|+++|.++. .|+||||+|+..|+.+++++|+.. .|+++
T Consensus 191 ~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~-~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~v 266 (337)
T 4g8k_A 191 MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVEKKHLGLVQRLLEQ---EHIEI 266 (337)
T ss_dssp SCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCG-GGCCHHHHHHHTTCHHHHHHHHTS---TTCCT
T ss_pred cCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhhhhHHHHHHHHh---cCCcc
Confidence 578888776 6999999887754 445555666678999999997 799999999999999999999986 57899
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhh
Q 013316 79 EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 148 (445)
Q Consensus 79 ~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~ 148 (445)
|.+|..|.||||+|+..|+.+++++|+++||+++.+ +|| ++|...++.+++++|+++|++++..
T Consensus 267 n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L-~~A~~~~~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 267 NDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLV-MTARRNYDHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp TCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHH-HHHHHTTCHHHHHHHHHTTCCC---
T ss_pred cCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHH-HHHHHcCCHHHHHHHHHCcCCCCCC
Confidence 999999999999999999999999999999998765 599 8888899999999999999986543
No 150
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.78 E-value=6.5e-19 Score=159.55 Aligned_cols=151 Identities=18% Similarity=0.194 Sum_probs=125.8
Q ss_pred CCccCccCCC--CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccc
Q 013316 2 QKNQDRRSRS--AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79 (445)
Q Consensus 2 ~~~~~~~~~~--~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~ 79 (445)
+.|++.+... .|.||||+|+..|+.++++.|+. .+.+++..+. .|.||||+|+..|+.+++++|++. |++++
T Consensus 63 ~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~----~~~~~ 136 (240)
T 3eu9_A 63 SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK-YGADPSLIDG-EGCSCIHLAAQFGHTSIVAYLIAK----GQDVD 136 (240)
T ss_dssp HTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTT
T ss_pred HcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHH-cCCCCcccCC-CCCCHHHHHHHcCHHHHHHHHHhc----CCCcc
Confidence 3455554333 48999999999999999988875 5888888886 799999999999999999999995 78899
Q ss_pred cccCCCCcHHHHHHHcCC-HHHHHHHHhcCCCCccccc-CCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhh
Q 013316 80 AQNMYGETPLHMAAKNGC-NEAAKLLLAHGAFIEAKAN-EGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET 157 (445)
Q Consensus 80 ~~d~~g~tpLh~A~~~g~-~~~~~~Ll~~ga~~~~~~~-~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~ 157 (445)
.++..|.||||+|+..++ .+++++|++.|++++..+. .|.||| |+|+..++.+++++|+++++++..++..+.++..
T Consensus 137 ~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~ 215 (240)
T 3eu9_A 137 MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTAL-HWAVLAGNTTVISLLLEAGANVDAQNIKGESALD 215 (240)
T ss_dssp CCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHH-HHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHH
T ss_pred ccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHH-HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 999999999999996665 7889999999999998887 899999 7888888999999999999888776655555554
Q ss_pred HH
Q 013316 158 KA 159 (445)
Q Consensus 158 ~a 159 (445)
.+
T Consensus 216 ~A 217 (240)
T 3eu9_A 216 LA 217 (240)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 151
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.78 E-value=1.5e-19 Score=172.36 Aligned_cols=127 Identities=22% Similarity=0.174 Sum_probs=106.9
Q ss_pred CCCccCccCCC-CCchHhHHHHHcCC---HHHHHHHHhhCCCCcCCCCCCCCChHHHHHHh----CCcHHHHHHhhcCCC
Q 013316 1 MQKNQDRRSRS-AKPATIHGCAQSGD---LLAFQRLLRENPSLLNERNPVMAQTPLHVSAG----YNKAEIVKSLLEWPG 72 (445)
Q Consensus 1 l~~~~~~~~~~-~~~t~L~~A~~~g~---~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~----~g~~~iv~~Ll~~~~ 72 (445)
+++|++++..+ .|.||||+||..|+ .+.+..++.....+++..+. .|+||||+|+. .|+.+++++|++.+.
T Consensus 151 l~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~-~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~ 229 (327)
T 1sw6_A 151 VKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILM 229 (327)
T ss_dssp HHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECT-TCCCHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCC-CCCCHHHHHHHHccccccHHHHHHHHHHHH
Confidence 35789998877 69999999999998 67777777765577899987 79999999999 899999999987410
Q ss_pred C----------------CCc-------------------------ccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 013316 73 N----------------DKV-------------------------ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI 111 (445)
Q Consensus 73 ~----------------~g~-------------------------~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~ 111 (445)
. .|+ ++|.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus 230 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~ 309 (327)
T 1sw6_A 230 GWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP 309 (327)
T ss_dssp HHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT
T ss_pred HHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 0 000 57889999999999999999999999999999999
Q ss_pred cccccCCCChhhhhhcCC
Q 013316 112 EAKANEGKTPLDHLSNGP 129 (445)
Q Consensus 112 ~~~~~~g~tpl~~~a~~~ 129 (445)
+.+|..|+||| ++|+..
T Consensus 310 ~~~d~~G~TpL-~~A~~~ 326 (327)
T 1sw6_A 310 FIANKSGLRPV-DFGAGL 326 (327)
T ss_dssp TCCCTTSCCGG-GGTCC-
T ss_pred cccCCCCCCHH-HHHHhc
Confidence 99999999999 666543
No 152
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.76 E-value=1.1e-18 Score=170.17 Aligned_cols=230 Identities=16% Similarity=0.084 Sum_probs=147.5
Q ss_pred HhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC--CCCCCeEEeec
Q 013316 169 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI--LPTDRVTEVQR 246 (445)
Q Consensus 169 ~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~--~~~~~~~~~~~ 246 (445)
++++|.+..++.+.+++... .....+.+++|+||||||||++|+.+++.+..... -...+++.++|
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~------------~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPA------------LRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGG------------TSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred CCCCCHHHHHHHHHHHHHHH------------HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 45899998888888754322 12346778999999999999999999998843200 00227888887
Q ss_pred cccccc----------------ccCCchhHH-HHHHHHc----cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc
Q 013316 247 TDLVGE----------------FVGHTGPKT-RRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 305 (445)
Q Consensus 247 ~~l~~~----------------~~g~~~~~~-~~~~~~a----~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~ 305 (445)
....+. ..|.+...+ ..++... .+.||||||+|.+...+ ...+.+..++..++
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQ 160 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGG
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchh
Confidence 753211 112223332 2233222 23599999999997642 12256667777665
Q ss_pred ----CCcEEEEEecCchhHHHHHhhCccccccccc-ceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHH
Q 013316 306 ----GGKVVVIFAGYSEPMKRVIASNEGFCRRVTK-FFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 380 (445)
Q Consensus 306 ----~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~-~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 380 (445)
..++++|++++..+... ..++.+++||.. .+.|++|+.+++.+|+...+..... ...++++++.
T Consensus 161 ~~~~~~~~~~I~~t~~~~~~~--~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~---------~~~~~~~~~~ 229 (387)
T 2v1u_A 161 ELGDRVWVSLVGITNSLGFVE--NLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFN---------PGVLDPDVVP 229 (387)
T ss_dssp CC-----CEEEEECSCSTTSS--SSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBC---------TTTBCSSHHH
T ss_pred hcCCCceEEEEEEECCCchHh--hhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhcc---------CCCCCHHHHH
Confidence 55778888877664321 237889999975 8999999999999999998864210 1233444555
Q ss_pred HHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316 381 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440 (445)
Q Consensus 381 ~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 440 (445)
.+....+ +.+||.|.+.++++.+...... .+...|+.+|+.++++.+
T Consensus 230 ~l~~~~~----~~~G~~r~~~~~l~~a~~~a~~---------~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 230 LCAALAA----REHGDARRALDLLRVAGEIAER---------RREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHH----SSSCCHHHHHHHHHHHHHHHHH---------TTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHH----HhccCHHHHHHHHHHHHHHHHH---------cCCCCcCHHHHHHHHHHH
Confidence 4443332 2358999999999988443221 122468899998888765
No 153
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.76 E-value=1.9e-17 Score=161.36 Aligned_cols=226 Identities=13% Similarity=0.092 Sum_probs=149.9
Q ss_pred HhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcC---CCC-CCCeEEe
Q 013316 169 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILP-TDRVTEV 244 (445)
Q Consensus 169 ~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~---~~~-~~~~~~~ 244 (445)
++++|.+..++.+.+++.... ....+.+++|+||||||||++|+.+++.+.... .-. ..+++.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~------------~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i 87 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV------------KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYV 87 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH------------TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHH------------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEE
Confidence 569999999988888765432 134567899999999999999999999884420 000 2378888
Q ss_pred eccccc-----------ccc-------cCCchhH-HHHHHHHc--cCcEEEEcCccccccCCCCCCchhHHHH-HHHHHh
Q 013316 245 QRTDLV-----------GEF-------VGHTGPK-TRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEA-LEEIMS 302 (445)
Q Consensus 245 ~~~~l~-----------~~~-------~g~~~~~-~~~~~~~a--~~~il~lDEid~l~~~~~~~~~~~~~~~-~~~ll~ 302 (445)
+|+... ..+ .|.+... +..++... .+.||||||+|.+...+. .+. +..|+.
T Consensus 88 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~-------~~~~l~~l~~ 160 (384)
T 2qby_B 88 NCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRG-------GDIVLYQLLR 160 (384)
T ss_dssp EHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTT-------SHHHHHHHHT
T ss_pred ECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCC-------CceeHHHHhc
Confidence 876543 111 1222223 23333322 224999999999976431 145 666666
Q ss_pred hccCCcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHH
Q 013316 303 VMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL 382 (445)
Q Consensus 303 ~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 382 (445)
.. .++.+|++++..+.. ...++.+++||...+.|++|+.+++.+|+..++.+.. . ...++++++..+
T Consensus 161 ~~--~~~~iI~~t~~~~~~--~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~--------~-~~~~~~~~~~~i 227 (384)
T 2qby_B 161 SD--ANISVIMISNDINVR--DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGL--------I-KGTYDDEILSYI 227 (384)
T ss_dssp SS--SCEEEEEECSSTTTT--TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTS--------C-TTSCCSHHHHHH
T ss_pred CC--cceEEEEEECCCchH--hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhc--------c-cCCcCHHHHHHH
Confidence 55 678888887765431 1237888999988999999999999999999886310 0 123455565544
Q ss_pred HHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316 383 IEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 441 (445)
Q Consensus 383 ~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 441 (445)
. ..+. +.+||.|.+.++++.+..... +...|+.+|+.++++.+.
T Consensus 228 ~-~~~~---~~~G~~r~a~~~l~~a~~~a~-----------~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 228 A-AISA---KEHGDARKAVNLLFRAAQLAS-----------GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp H-HHHH---TTCCCHHHHHHHHHHHHHHTT-----------SSSCCCHHHHHHHHHHHH
T ss_pred H-HHHH---hccCCHHHHHHHHHHHHHHhc-----------CCCccCHHHHHHHHHHHh
Confidence 4 3331 346899999999998844322 223688899988887653
No 154
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.76 E-value=6.2e-18 Score=180.77 Aligned_cols=214 Identities=19% Similarity=0.195 Sum_probs=135.5
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHc---CCCCCCCeEE
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTE 243 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~---~~~~~~~~~~ 243 (445)
.++.++|.+....++.+.+. .....+++|+||||||||++|+.+|+.+... ..+...+++.
T Consensus 168 ~ld~viGr~~~i~~l~~~l~----------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILL----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHH----------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred CCcccCCcHHHHHHHHHHHh----------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 46679999988777776432 2356789999999999999999999998542 1233457899
Q ss_pred eeccccc--ccccCCchhHHHHHHHHcc----CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316 244 VQRTDLV--GEFVGHTGPKTRRRIKEAE----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 317 (445)
Q Consensus 244 ~~~~~l~--~~~~g~~~~~~~~~~~~a~----~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~ 317 (445)
++++.+. ..+.|+....+..+|..+. ++||||||+|.+.+.+... ...++.+.|...++.+.+.+|++|+.
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~---g~~~~~~~L~~~l~~~~i~~I~at~~ 308 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE---GAVDAGNMLKPALARGELRLIGATTL 308 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHHTTCCCEEEEECH
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc---chHHHHHHHHHHHhCCCeEEEEecCc
Confidence 9998886 4577888888888887663 4699999999998755421 12356677788888899999999998
Q ss_pred hhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCc
Q 013316 318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 397 (445)
Q Consensus 318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~ 397 (445)
..... +..+|+|++||+ .+.|++|+.+++.+|++.++.+.... . ...++++++..+ ...+.++.......
T Consensus 309 ~~~~~-~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~~---~----~~~i~~~al~~~-~~ls~r~i~~~~lp 378 (854)
T 1qvr_A 309 DEYRE-IEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEVH---H----GVRISDSAIIAA-ATLSHRYITERRLP 378 (854)
T ss_dssp HHHHH-HTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHHH---T----TCEECHHHHHHH-HHHHHHHCCSSCTH
T ss_pred hHHhh-hccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhhh---c----CCCCCHHHHHHH-HHHHhhhcccccCh
Confidence 87765 667999999996 59999999999999999877654221 1 224455665543 34444443332223
Q ss_pred hhhHHHHHHHHH
Q 013316 398 GLVDPMLVNARE 409 (445)
Q Consensus 398 r~l~~~~~~~~~ 409 (445)
+.+..+++.+..
T Consensus 379 ~kai~lldea~a 390 (854)
T 1qvr_A 379 DKAIDLIDEAAA 390 (854)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555555543
No 155
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.75 E-value=6.2e-18 Score=178.82 Aligned_cols=201 Identities=19% Similarity=0.242 Sum_probs=135.5
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHc---CCCCCCCeEE
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTE 243 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~---~~~~~~~~~~ 243 (445)
.++.++|+++.++++.+.+. .....++||+||||||||++|+++|+.+... ..+...+++.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~----------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLS----------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHH----------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred CCCCccCchHHHHHHHHHHh----------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 35679999999888887543 3456789999999999999999999998542 2233457777
Q ss_pred eecccccccccCCchhHHHHHHHHcc---CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhH
Q 013316 244 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM 320 (445)
Q Consensus 244 ~~~~~l~~~~~g~~~~~~~~~~~~a~---~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~ 320 (445)
+++ ...|.|+.+..++.+|..+. ++||||| . ..++++.|+..++.+.+.+|++|+...+
T Consensus 242 ~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~----------~~~~~~~L~~~l~~~~v~~I~at~~~~~ 303 (758)
T 3pxi_A 242 LDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSLARGELQCIGATTLDEY 303 (758)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCTTSSSCEEEEECCTTTT
T ss_pred ecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C----------chhHHHHHHHHHhcCCEEEEeCCChHHH
Confidence 776 45678888888888887664 7999999 1 1156788899999999999999999998
Q ss_pred HHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhh
Q 013316 321 KRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLV 400 (445)
Q Consensus 321 ~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l 400 (445)
...+..+|+|++|| ..|.|+.|+.+++.+|++.++.+.... ....++++++..+. ..+..........+..
T Consensus 304 ~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~-------~~~~i~~~al~~~~-~~s~~~i~~~~~p~~a 374 (758)
T 3pxi_A 304 RKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAH-------HRVSITDDAIEAAV-KLSDRYISDRFLPDKA 374 (758)
T ss_dssp HHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGG-------SSCSCCHHHHHHHH-HHHHHSSCCSCTTHHH
T ss_pred HHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHh-------cCCCCCHHHHHHHH-HHhhcccccCcCCcHH
Confidence 77777899999999 679999999999999999877664321 12345666666443 3333333323333445
Q ss_pred HHHHHHHHHh
Q 013316 401 DPMLVNAREN 410 (445)
Q Consensus 401 ~~~~~~~~~~ 410 (445)
..+++.+...
T Consensus 375 i~ll~~a~~~ 384 (758)
T 3pxi_A 375 IDLIDEAGSK 384 (758)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5566655443
No 156
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.75 E-value=2.5e-18 Score=143.55 Aligned_cols=138 Identities=16% Similarity=0.158 Sum_probs=102.0
Q ss_pred hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316 170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 249 (445)
Q Consensus 170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l 249 (445)
+++|.++.++++.+.+... +....+|+|+||||||||++|++||+.+... ..+|+ ++|+.+
T Consensus 2 ~iiG~s~~~~~~~~~~~~~--------------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~----~~~~v-~~~~~~ 62 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL--------------SETDIAVWLYGAPGTGRMTGARYLHQFGRNA----QGEFV-YRELTP 62 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH--------------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTT----TSCCE-EEECCT
T ss_pred CceeCCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCCCHHHHHHHHHHhCCcc----CCCEE-EECCCC
Confidence 4899999998888876654 3466789999999999999999999876442 33888 999876
Q ss_pred cccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHH--h
Q 013316 250 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVI--A 325 (445)
Q Consensus 250 ~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~--~ 325 (445)
... ......+..+.+++|||||||.+.+ +.+..|+..|.. .++.+|++++.+....+. .
T Consensus 63 ~~~------~~~~~~~~~a~~g~l~ldei~~l~~-----------~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~ 125 (145)
T 3n70_A 63 DNA------PQLNDFIALAQGGTLVLSHPEHLTR-----------EQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNH 125 (145)
T ss_dssp TTS------SCHHHHHHHHTTSCEEEECGGGSCH-----------HHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSC
T ss_pred Ccc------hhhhcHHHHcCCcEEEEcChHHCCH-----------HHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCC
Confidence 543 3456778889999999999999976 667778877754 456788887766544322 2
Q ss_pred hCcccccccc-cceeCCCC
Q 013316 326 SNEGFCRRVT-KFFHFNDF 343 (445)
Q Consensus 326 ~~~~l~~R~~-~~i~~~~~ 343 (445)
.++.|..|+. ..|.+|++
T Consensus 126 ~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 126 IIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp CCHHHHHHHHHHEEECCCC
T ss_pred CCHHHHHHhcCCEEeCCCC
Confidence 2466667774 45788875
No 157
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.75 E-value=2.1e-18 Score=142.55 Aligned_cols=115 Identities=23% Similarity=0.255 Sum_probs=102.2
Q ss_pred CCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 013316 38 SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANE 117 (445)
Q Consensus 38 ~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~ 117 (445)
.++ .++. .|+||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..
T Consensus 2 ~d~-~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 75 (137)
T 3c5r_A 2 IDP-FTNH-RGETLLHIASIKGDIPSVEYLLQN----GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ 75 (137)
T ss_dssp --C-CCCT-TCCCHHHHHHHHTCHHHHHHHHHT----TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGG
T ss_pred CCC-CcCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCC
Confidence 444 4454 799999999999999999999995 8899999999999999999999999999999999999999999
Q ss_pred CCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316 118 GKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA 159 (445)
Q Consensus 118 g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a 159 (445)
|+||| |+|+..++.+++++|++++++...++..+.++...+
T Consensus 76 g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A 116 (137)
T 3c5r_A 76 NDSPL-HDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYT 116 (137)
T ss_dssp GCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGC
T ss_pred CCCHH-HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 99999 788889999999999999999888777776666544
No 158
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.75 E-value=3.5e-18 Score=172.60 Aligned_cols=199 Identities=17% Similarity=0.199 Sum_probs=127.9
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCC---CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEE
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA---RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 243 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~ 243 (445)
.|++++|++..++.+.+++...... .+......+. ..+.++||+||||||||++|+++|+.++. ++++
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~--~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~-------~~i~ 107 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENS--KKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY-------DILE 107 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHH--HHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC-------EEEE
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhh--chhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC-------CEEE
Confidence 4678999999999999987643221 1111111111 24578999999999999999999999865 8999
Q ss_pred eecccccccccCCch-------hHHHHHHHH--------ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc
Q 013316 244 VQRTDLVGEFVGHTG-------PKTRRRIKE--------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK 308 (445)
Q Consensus 244 ~~~~~l~~~~~g~~~-------~~~~~~~~~--------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~ 308 (445)
++++++.+....... ..+...|.. ..++||||||+|.+....+ ..++.|+..++..+
T Consensus 108 in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~--------~~l~~L~~~l~~~~ 179 (516)
T 1sxj_A 108 QNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--------GGVGQLAQFCRKTS 179 (516)
T ss_dssp ECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST--------THHHHHHHHHHHCS
T ss_pred EeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH--------HHHHHHHHHHHhcC
Confidence 999886543221100 001122222 3568999999999987433 23456666665433
Q ss_pred --EEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHH
Q 013316 309 --VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE 386 (445)
Q Consensus 309 --~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 386 (445)
+++|+++...+. -+++++|+ ..+.|++|+.+++.+++...+.+.. +. ++++++..+. ..
T Consensus 180 ~~iIli~~~~~~~~------l~~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~-------~~----i~~~~l~~la-~~ 240 (516)
T 1sxj_A 180 TPLILICNERNLPK------MRPFDRVC-LDIQFRRPDANSIKSRLMTIAIREK-------FK----LDPNVIDRLI-QT 240 (516)
T ss_dssp SCEEEEESCTTSST------TGGGTTTS-EEEECCCCCHHHHHHHHHHHHHHHT-------CC----CCTTHHHHHH-HH
T ss_pred CCEEEEEcCCCCcc------chhhHhce-EEEEeCCCCHHHHHHHHHHHHHHcC-------CC----CCHHHHHHHH-HH
Confidence 444443322111 24455555 7899999999999999988776531 22 3445666444 44
Q ss_pred HHHhhhcccCchhhHHHHHHH
Q 013316 387 TTEKQRREMNGGLVDPMLVNA 407 (445)
Q Consensus 387 ~~~~~~~~~n~r~l~~~~~~~ 407 (445)
+ .||.|.+.++++.+
T Consensus 241 s------~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 241 T------RGDIRQVINLLSTI 255 (516)
T ss_dssp T------TTCHHHHHHHHTHH
T ss_pred c------CCcHHHHHHHHHHH
Confidence 4 57777888888766
No 159
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.74 E-value=5e-19 Score=159.87 Aligned_cols=133 Identities=18% Similarity=0.195 Sum_probs=113.1
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~ 80 (445)
+.|++++..+ .|.||||+||..|+.++++.|+. .++++|..+. .|+||||+|+..|+.+++++|++. |++++.
T Consensus 42 ~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~n~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~----ga~~~~ 115 (229)
T 2vge_A 42 KEMNDPSQPNEEGITALHNAICGANYSIVDFLIT-AGANVNSPDS-HGWTPLHCAASCNDTVICMALVQH----GAAIFA 115 (229)
T ss_dssp HHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHTT----TCCTTC
T ss_pred hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCccc
Confidence 4577888766 69999999999999999998885 5899999997 799999999999999999999995 889999
Q ss_pred cc-CCCCcHHHHH--HHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhh
Q 013316 81 QN-MYGETPLHMA--AKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEE 144 (445)
Q Consensus 81 ~d-~~g~tpLh~A--~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~ 144 (445)
++ ..|.||||+| +..|+.+++++|+++|++++.+|..|.||++.++.... .++++..+++
T Consensus 116 ~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~----~~~ll~~ga~ 178 (229)
T 2vge_A 116 TTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG----DELSFREGES 178 (229)
T ss_dssp CCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST----TBCCBCTTCE
T ss_pred ccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc----cccCcccccc
Confidence 86 5999999999 99999999999999999999999888888833333322 2455566654
No 160
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.74 E-value=1.2e-18 Score=152.40 Aligned_cols=166 Identities=20% Similarity=0.299 Sum_probs=116.6
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC---CCCCCeEE
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTE 243 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~---~~~~~~~~ 243 (445)
.+++++|.++..+.+.+.+. ...+.+++|+||||||||++|+.+++.+..... ....+++.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQ----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred cccccccchHHHHHHHHHHh----------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 45679999988777776432 235678999999999999999999999865221 11336778
Q ss_pred eeccccc--ccccCCchhHHHHHHHHc----cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316 244 VQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 317 (445)
Q Consensus 244 ~~~~~l~--~~~~g~~~~~~~~~~~~a----~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~ 317 (445)
++++.+. ..+.|.....+..++... .+.||||||+|.+.+.+..... ..+++.|...++.+++.+|++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~---~~~~~~l~~~~~~~~~~~i~~~~~ 160 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA---MDAGNMLKPALARGELHCVGATTL 160 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C---CCCHHHHHHHHHTTSCCEEEEECH
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccch---HHHHHHHHHhhccCCeEEEEeCCH
Confidence 8877664 233444444555555432 3569999999999865432111 123455566667788889999888
Q ss_pred hhHHHHHhhCcccccccccceeCCCCCHHHHHHHH
Q 013316 318 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKIL 352 (445)
Q Consensus 318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il 352 (445)
.........++++++||. .+.|++|+.+++.+|+
T Consensus 161 ~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 161 DEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 776666667899999996 7999999999998875
No 161
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.74 E-value=1.7e-16 Score=144.10 Aligned_cols=201 Identities=18% Similarity=0.223 Sum_probs=136.1
Q ss_pred HHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC--------
Q 013316 168 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD-------- 239 (445)
Q Consensus 168 ~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~-------- 239 (445)
+++++|.+..++.+.+++.. ...+..++|+||||||||++|+.+++.+.........
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~---------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSL---------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHH---------------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred HHHHhCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 45699999998888876542 1234579999999999999999999988653221110
Q ss_pred ---------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhh
Q 013316 240 ---------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV 303 (445)
Q Consensus 240 ---------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~ 303 (445)
.++.++... ......+..+++.. .+.+|||||+|.+.+ +.++.|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-----------~~~~~l~~~ 149 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLKT 149 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-----------HHHHHHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-----------HHHHHHHHH
Confidence 112221111 01223345555543 358999999999865 566778877
Q ss_pred ccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHH
Q 013316 304 MDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAA 381 (445)
Q Consensus 304 ~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 381 (445)
++. ..+++|++++.... ..+.+++|+ ..+.|++|+.+++.+++..++.+. ...++++++..
T Consensus 150 l~~~~~~~~~i~~t~~~~~-----~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~-----------~~~~~~~~~~~ 212 (250)
T 1njg_A 150 LEEPPEHVKFLLATTDPQK-----LPVTILSRC-LQFHLKALDVEQIRHQLEHILNEE-----------HIAHEPRALQL 212 (250)
T ss_dssp HHSCCTTEEEEEEESCGGG-----SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHT-----------TCCBCHHHHHH
T ss_pred HhcCCCceEEEEEeCChHh-----CCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhc-----------CCCCCHHHHHH
Confidence 765 45677776655332 267788886 789999999999999999988753 12445566664
Q ss_pred HHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHH
Q 013316 382 LIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 437 (445)
Q Consensus 382 ~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~ 437 (445)
+. ..+ .||.|.+.++++++... . . ..||.+|+.+++
T Consensus 213 l~-~~~------~G~~~~~~~~~~~~~~~-------~--~----~~i~~~~v~~~~ 248 (250)
T 1njg_A 213 LA-RAA------EGSLRDALSLTDQAIAS-------G--D----GQVSTQAVSAML 248 (250)
T ss_dssp HH-HHH------TTCHHHHHHHHHHHHTT-------T--T----SSBCHHHHHHHS
T ss_pred HH-HHc------CCCHHHHHHHHHHHHhc-------c--C----ceecHHHHHHHh
Confidence 44 444 67899999999887211 0 1 169999998875
No 162
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.73 E-value=3.9e-17 Score=148.33 Aligned_cols=183 Identities=10% Similarity=0.016 Sum_probs=123.8
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHH-HccCcEEEEcCcccccc
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-EAEGGILFVDEAYRLIP 283 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~-~a~~~il~lDEid~l~~ 283 (445)
...+++|+||||||||++|+.+++.+...+. ++..++++.+...+.. .+. ...+.+|||||+|.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~~~~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELER----RSFYIPLGIHASISTA--------LLEGLEQFDLICIDDVDAVAG 118 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEEEGGGGGGSCGG--------GGTTGGGSSEEEEETGGGGTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCC----eEEEEEHHHHHHHHHH--------HHHhccCCCEEEEeccccccC
Confidence 4678999999999999999999999986433 7888888776543211 111 13568999999999875
Q ss_pred CCCCCCchhHHHHHHHHHhhc----cCCcE-EEEEecCchhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHH
Q 013316 284 MQKADDKDYGIEALEEIMSVM----DGGKV-VVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKM 356 (445)
Q Consensus 284 ~~~~~~~~~~~~~~~~ll~~~----~~~~~-~~i~a~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l 356 (445)
.. ..++.|+..+ +.+.+ +++.++..... +...++.+++||. ..+.|++|+.+++.+++..++
T Consensus 119 ~~---------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~ 187 (242)
T 3bos_A 119 HP---------LWEEAIFDLYNRVAEQKRGSLIVSASASPME--AGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRA 187 (242)
T ss_dssp CH---------HHHHHHHHHHHHHHHHCSCEEEEEESSCTTT--TTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHH
T ss_pred CH---------HHHHHHHHHHHHHHHcCCCeEEEEcCCCHHH--HHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHH
Confidence 32 1123333333 33544 44444332211 1112478888986 889999999999999999988
Q ss_pred hcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHH
Q 013316 357 NNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAG 436 (445)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a 436 (445)
.+.. ..++++++..+. ..+ +||.|.+.++++++...... +...||.+++.++
T Consensus 188 ~~~~-----------~~~~~~~~~~l~-~~~------~g~~r~l~~~l~~~~~~a~~----------~~~~It~~~v~~~ 239 (242)
T 3bos_A 188 AMRG-----------LQLPEDVGRFLL-NRM------ARDLRTLFDVLDRLDKASMV----------HQRKLTIPFVKEM 239 (242)
T ss_dssp HHTT-----------CCCCHHHHHHHH-HHT------TTCHHHHHHHHHHHHHHHHH----------HTCCCCHHHHHHH
T ss_pred HHcC-----------CCCCHHHHHHHH-HHc------cCCHHHHHHHHHHHHHHHHH----------hCCCCcHHHHHHH
Confidence 7531 245666766444 445 78999999999988543211 1125999999887
Q ss_pred HH
Q 013316 437 LK 438 (445)
Q Consensus 437 ~~ 438 (445)
++
T Consensus 240 l~ 241 (242)
T 3bos_A 240 LR 241 (242)
T ss_dssp HT
T ss_pred hh
Confidence 64
No 163
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.73 E-value=1.5e-17 Score=137.22 Aligned_cols=101 Identities=24% Similarity=0.356 Sum_probs=92.1
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~ 80 (445)
+.|++++..+ .|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++ |++++.
T Consensus 35 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~ 108 (136)
T 2jab_A 35 ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDA-IGFTPLHLAAFIGHLEIAEVLLKH----GADVNA 108 (136)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHT----TCCTTC
T ss_pred HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCcC
Confidence 4677877766 69999999999999999998885 5889999987 799999999999999999999995 889999
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 013316 81 QNMYGETPLHMAAKNGCNEAAKLLLAHG 108 (445)
Q Consensus 81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~g 108 (445)
+|..|.||||+|+..|+.+++++|+++|
T Consensus 109 ~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 109 QDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred cCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999999999999999999876
No 164
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.73 E-value=4.6e-18 Score=159.92 Aligned_cols=117 Identities=24% Similarity=0.251 Sum_probs=99.1
Q ss_pred CCccCccC-------CCCCchHhHHHHHc---CCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCC
Q 013316 2 QKNQDRRS-------RSAKPATIHGCAQS---GDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWP 71 (445)
Q Consensus 2 ~~~~~~~~-------~~~~~t~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~ 71 (445)
+.|++++. ...|.||||+||.. |+.++++.|+.. ++++|..+. .|+||||+|+..|+.+++++|+++
T Consensus 172 ~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~- 248 (301)
T 2b0o_E 172 ANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAA-DGNTALHYAALYNQPDCLKLLLKG- 248 (301)
T ss_dssp HTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHT-
T ss_pred hcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHc-
Confidence 35666664 45799999999997 899999988865 889999997 799999999999999999999995
Q ss_pred CCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCC
Q 013316 72 GNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGS 131 (445)
Q Consensus 72 ~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~ 131 (445)
|++++.+|..|.||||+|+..++.+++++|+++|++ .|.||| ++|+..++
T Consensus 249 ---gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpL-h~A~~~g~ 298 (301)
T 2b0o_E 249 ---RALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPL-HVDYSWVI 298 (301)
T ss_dssp ---TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCC-C-------
T ss_pred ---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChh-HHHHhcCC
Confidence 899999999999999999999999999999999886 589999 67766654
No 165
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.73 E-value=1.8e-18 Score=142.81 Aligned_cols=116 Identities=22% Similarity=0.213 Sum_probs=104.1
Q ss_pred CCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccc
Q 013316 37 PSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN 116 (445)
Q Consensus 37 ~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~ 116 (445)
+.+++..+. .|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+. ++.+++++|+++|++++.+|.
T Consensus 2 ~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~ 75 (136)
T 1d9s_A 2 SPGIHMLGG-SSDAGLATAAARGQVETVRQLLEA----GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADP 75 (136)
T ss_dssp CCCCSCCCC-CCSCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBT
T ss_pred CCCccCCCC-CCccHHHHHHHcCCHHHHHHHHHc----CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCC
Confidence 457888887 799999999999999999999995 88999999999999999999 999999999999999999999
Q ss_pred C-CCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316 117 E-GKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKA 159 (445)
Q Consensus 117 ~-g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a 159 (445)
. |+||| |+|+..++.+++++|+++++++..++..+.++...+
T Consensus 76 ~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A 118 (136)
T 1d9s_A 76 ATLTRPV-HDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA 118 (136)
T ss_dssp TTTBCHH-HHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHH
T ss_pred CCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence 9 99999 788888999999999999988777766555555443
No 166
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.72 E-value=3.4e-16 Score=149.30 Aligned_cols=207 Identities=17% Similarity=0.216 Sum_probs=135.6
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.+++++|++.++..+...+.....+ ..++.+++|+||||||||++|++++..++. ++...+.
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~-----------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~-------~~~~~sg 84 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMR-----------GEVLDHVLLAGPPGLGKTTLAHIIASELQT-------NIHVTSG 84 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHH-----------TCCCCCEEEESSTTSSHHHHHHHHHHHHTC-------CEEEEET
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEec
Confidence 3566889888877777654432111 235678999999999999999999999865 4444443
Q ss_pred ccccccccCCchhHHHHHHHHc-cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-------------------
Q 013316 247 TDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------------------- 306 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~~a-~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------------------- 306 (445)
+.+. ....+...+... .+.|+||||++.+.+ .+.+.|+..++.
T Consensus 85 ~~~~------~~~~l~~~~~~~~~~~v~~iDE~~~l~~-----------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~ 147 (334)
T 1in4_A 85 PVLV------KQGDMAAILTSLERGDVLFIDEIHRLNK-----------AVEELLYSAIEDFQIDIMIGKGPSAKSIRID 147 (334)
T ss_dssp TTCC------SHHHHHHHHHHCCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCCCC--------------
T ss_pred hHhc------CHHHHHHHHHHccCCCEEEEcchhhcCH-----------HHHHHHHHHHHhcccceeeccCccccccccc
Confidence 3221 233444555443 568999999999875 233344433322
Q ss_pred -CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHH
Q 013316 307 -GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 385 (445)
Q Consensus 307 -~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 385 (445)
..+.++.+++... ..++++++||...+.|++|+.+++.+|++...+.. ...++++++..+. .
T Consensus 148 l~~~~li~at~~~~-----~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~-----------~~~~~~~~~~~ia-~ 210 (334)
T 1in4_A 148 IQPFTLVGATTRSG-----LLSSPLRSRFGIILELDFYTVKELKEIIKRAASLM-----------DVEIEDAAAEMIA-K 210 (334)
T ss_dssp -CCCEEEEEESCGG-----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHT-----------TCCBCHHHHHHHH-H
T ss_pred CCCeEEEEecCCcc-----cCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHc-----------CCCcCHHHHHHHH-H
Confidence 1255666655543 23789999998889999999999999999876642 1245566665443 4
Q ss_pred HHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316 386 ETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440 (445)
Q Consensus 386 ~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 440 (445)
.+ .|+.|.+.++++++....... +...||.+++.++++.+
T Consensus 211 ~~------~G~~R~a~~ll~~~~~~a~~~---------~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 211 RS------RGTPRIAIRLTKRVRDMLTVV---------KADRINTDIVLKTMEVL 250 (334)
T ss_dssp TS------TTCHHHHHHHHHHHHHHHHHH---------TCSSBCHHHHHHHHHHH
T ss_pred hc------CCChHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHh
Confidence 43 567788888888875433221 11257777777777654
No 167
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.72 E-value=1.6e-17 Score=158.65 Aligned_cols=226 Identities=14% Similarity=0.086 Sum_probs=137.6
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.+++++|++.++..+...+. ...+++|+||||||||++|+++++.++. ++..+++
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~------------------~~~~vll~G~pGtGKT~la~~la~~~~~-------~~~~i~~ 79 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGIC------------------TGGHILLEGVPGLAKTLSVNTLAKTMDL-------DFHRIQF 79 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHH------------------HTCCEEEESCCCHHHHHHHHHHHHHTTC-------CEEEEEC
T ss_pred hccceeCcHHHHHHHHHHHH------------------cCCeEEEECCCCCcHHHHHHHHHHHhCC-------CeEEEec
Confidence 34569999998877765432 1358999999999999999999998765 7777776
Q ss_pred cc------cccccc-CCchhHHHHHHHHcc----CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC--------
Q 013316 247 TD------LVGEFV-GHTGPKTRRRIKEAE----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------- 307 (445)
Q Consensus 247 ~~------l~~~~~-g~~~~~~~~~~~~a~----~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------- 307 (445)
+. +.+... +... ..+.... ++||||||++.+.+ +.++.|++.|+++
T Consensus 80 ~~~~~~~~l~g~~~~~~~~----~~~~~~~g~l~~~vl~iDEi~~~~~-----------~~~~~Ll~~l~~~~~~~~g~~ 144 (331)
T 2r44_A 80 TPDLLPSDLIGTMIYNQHK----GNFEVKKGPVFSNFILADEVNRSPA-----------KVQSALLECMQEKQVTIGDTT 144 (331)
T ss_dssp CTTCCHHHHHEEEEEETTT----TEEEEEECTTCSSEEEEETGGGSCH-----------HHHHHHHHHHHHSEEEETTEE
T ss_pred CCCCChhhcCCceeecCCC----CceEeccCcccccEEEEEccccCCH-----------HHHHHHHHHHhcCceeeCCEE
Confidence 31 222211 1000 0011111 37999999998876 6677888877643
Q ss_pred -----cEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccc-----------cccC
Q 013316 308 -----KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYG-----------FKLH 371 (445)
Q Consensus 308 -----~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~-----------~~~~ 371 (445)
.+++|+++++.........+++|++||+..+.|+.|+.+++.+|++..+........... ....
T Consensus 145 ~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 224 (331)
T 2r44_A 145 YPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINK 224 (331)
T ss_dssp EECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHT
T ss_pred EECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhcc
Confidence 356666666443211112479999999888999999999999999988765311000000 0001
Q ss_pred CcccHHHHHHHHHHHHH----Hh---------hhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHH
Q 013316 372 SSCSMDAIAALIEKETT----EK---------QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 438 (445)
Q Consensus 372 ~~~~~~~l~~~~~~~~~----~~---------~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~ 438 (445)
..++++.+..+...... ++ .....+.|.+.+++..+...... .+...|+.+|+.+++.
T Consensus 225 v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l---------~g~~~v~~~dv~~~~~ 295 (331)
T 2r44_A 225 VTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFF---------NNRDYVLPEDIKEVAY 295 (331)
T ss_dssp CBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHH---------TTCSBCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHH---------cCCCCCCHHHHHHHHH
Confidence 23455555544322210 10 11233577777777766333222 1223588888888877
Q ss_pred HHH
Q 013316 439 LLL 441 (445)
Q Consensus 439 ~~~ 441 (445)
.+.
T Consensus 296 ~vl 298 (331)
T 2r44_A 296 DIL 298 (331)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 168
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.72 E-value=8.6e-18 Score=134.32 Aligned_cols=104 Identities=38% Similarity=0.502 Sum_probs=96.1
Q ss_pred CCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChh
Q 013316 43 RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPL 122 (445)
Q Consensus 43 ~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl 122 (445)
+|. .|+||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..++.+++++|+++|++++.+|..|+|||
T Consensus 5 ~d~-~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl 79 (115)
T 2l6b_A 5 GSK-DGNTPLHNAAKNGHAEEVKKLLSK----GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPE 79 (115)
T ss_dssp CSC-SSCCHHHHHHHHTCHHHHHHHTTT----TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTT
T ss_pred cCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHH
Confidence 344 699999999999999999999995 889999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCChHHHHHHHhhhhhHHhhhhhh
Q 013316 123 DHLSNGPGSAKLRELLLWHSEEQRKRRALE 152 (445)
Q Consensus 123 ~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~ 152 (445)
++|...++.+++++|+++|++++..+..+
T Consensus 80 -~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~ 108 (115)
T 2l6b_A 80 -HLAKKNGHHEIVKLLDAKGADVNARSWGS 108 (115)
T ss_dssp -HHHHTTTCHHHHHHHHTTSSSHHHHSCCC
T ss_pred -HHHHHCCCHHHHHHHHHcCCCCCcCCccc
Confidence 88888899999999999999988776544
No 169
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.71 E-value=7.4e-18 Score=136.50 Aligned_cols=108 Identities=22% Similarity=0.194 Sum_probs=97.5
Q ss_pred CCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCChhhhhh
Q 013316 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLS 126 (445)
Q Consensus 47 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a 126 (445)
.|.||||+|+..|+.+++++|++. |.+++.+|..|.||||+|+..++.+++++|+++|++++.+|..|+||| |+|
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL-~~A 80 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAK----GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL-LSA 80 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHT----TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHc----CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHH-HHH
Confidence 588999999999999999999995 789999999999999999999999999999999999999999999999 888
Q ss_pred cCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316 127 NGPGSAKLRELLLWHSEEQRKRRALEACSETKA 159 (445)
Q Consensus 127 ~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a 159 (445)
+..++.+++++|+++++++..++..+.++...+
T Consensus 81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence 888999999999999998877766665554433
No 170
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.71 E-value=9.4e-17 Score=152.79 Aligned_cols=200 Identities=14% Similarity=0.107 Sum_probs=128.2
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHH--ccCcEEEEcCccccc
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLI 282 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~--a~~~il~lDEid~l~ 282 (445)
.+.+++|+||||||||++|+++++.+... ..+++.++++.+...+.+.........|.. ...++|||||+|.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~ 111 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR----GYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLS 111 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT----TCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC----CCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCccccc
Confidence 46789999999999999999999998653 238899998887555443211111111211 246899999999987
Q ss_pred cCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHHhccc
Q 013316 283 PMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQT 360 (445)
Q Consensus 283 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~ 360 (445)
.++ .....+...+-...+.+..++++++++.. .+...+++|++||. ..+.|++ +.+++.+|++.++.+.
T Consensus 112 ~~~-----~~~~~l~~~l~~~~~~~~~iii~~~~~~~--~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~- 182 (324)
T 1l8q_A 112 GKE-----RTQIEFFHIFNTLYLLEKQIILASDRHPQ--KLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEF- 182 (324)
T ss_dssp TCH-----HHHHHHHHHHHHHHHTTCEEEEEESSCGG--GCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHT-
T ss_pred CCh-----HHHHHHHHHHHHHHHCCCeEEEEecCChH--HHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhc-
Confidence 532 11112222222223445555555543322 11234899999996 6789999 9999999999988753
Q ss_pred ccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhc-cHHHHHHHHHH
Q 013316 361 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTI-TLEDLEAGLKL 439 (445)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~d~~~a~~~ 439 (445)
...++++++..+. .. . +|.|++.++++++... ...... ..+...| |.+++.++++.
T Consensus 183 ----------~~~l~~~~l~~l~-~~------~-g~~r~l~~~l~~~~~~-~~~~l~----~~~~~~i~t~~~i~~~~~~ 239 (324)
T 1l8q_A 183 ----------NLELRKEVIDYLL-EN------T-KNVREIEGKIKLIKLK-GFEGLE----RKERKERDKLMQIVEFVAN 239 (324)
T ss_dssp ----------TCCCCHHHHHHHH-HH------C-SSHHHHHHHHHHHHHH-CHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCCHHHHHHHH-Hh------C-CCHHHHHHHHHHHHHc-CHHHhc----cccccCCCCHHHHHHHHHH
Confidence 1245666766444 32 2 6889999999988554 000000 1234568 88999988876
Q ss_pred H
Q 013316 440 L 440 (445)
Q Consensus 440 ~ 440 (445)
.
T Consensus 240 ~ 240 (324)
T 1l8q_A 240 Y 240 (324)
T ss_dssp H
T ss_pred H
Confidence 4
No 171
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.71 E-value=9.6e-17 Score=152.23 Aligned_cols=187 Identities=25% Similarity=0.277 Sum_probs=130.6
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|++.+++.+.+++. .....+++|+||||||||++|+.+++.+..... ..+++.+++
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~--~~~~~~~~~ 76 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVE----------------RKNIPHLLFSGPPGTGKTATAIALARDLFGENW--RDNFIEMNA 76 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTT----------------TTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCH--HHHCEEEET
T ss_pred CHHHHhCCHHHHHHHHHHHh----------------CCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcc--cCCeEEEeC
Confidence 35679999999888876432 233446999999999999999999998743110 115777887
Q ss_pred ccccccccCCchhHHHHHHH-----HccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchh
Q 013316 247 TDLVGEFVGHTGPKTRRRIK-----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP 319 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~-----~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~ 319 (445)
++..+. ......+..... ...+.||||||+|.+.+ +.++.|+..++. ..+++|++++...
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 77 SDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp TSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-----------HHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred ccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-----------HHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 764321 111111222221 13468999999999875 667888888886 5567777665433
Q ss_pred HHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchh
Q 013316 320 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL 399 (445)
Q Consensus 320 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~ 399 (445)
...+++++|| ..+.|++|+.+++.+++..++.+.. ..++++++..+. ..+ .||.|.
T Consensus 144 -----~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~-----------~~i~~~~l~~l~-~~~------~G~~r~ 199 (319)
T 2chq_A 144 -----RIIEPIQSRC-AVFRFKPVPKEAMKKRLLEICEKEG-----------VKITEDGLEALI-YIS------GGDFRK 199 (319)
T ss_dssp -----GSCHHHHTTC-EEEECCCCCHHHHHHHHHHHHHTTC-----------CCBCHHHHHHHH-HTT------TTCHHH
T ss_pred -----hcchHHHhhC-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHH-HHc------CCCHHH
Confidence 2378899999 5899999999999999998887641 245667776554 555 678888
Q ss_pred hHHHHHHHH
Q 013316 400 VDPMLVNAR 408 (445)
Q Consensus 400 l~~~~~~~~ 408 (445)
+.+.++.+.
T Consensus 200 ~~~~l~~~~ 208 (319)
T 2chq_A 200 AINALQGAA 208 (319)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887763
No 172
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.71 E-value=4.6e-17 Score=131.85 Aligned_cols=103 Identities=35% Similarity=0.530 Sum_probs=93.1
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~ 80 (445)
+.|++++..+ .|.||||+|+..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|++. |++++.
T Consensus 23 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~----g~~~~~ 96 (126)
T 1n0r_A 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEA----GADVNA 96 (126)
T ss_dssp HHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT----TCCTTC
T ss_pred HcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHH-cCCCCcccCC-CCCcHHHHHHHcChHHHHHHHHHc----CCCCcc
Confidence 3466666655 69999999999999999998875 6888999987 799999999999999999999995 889999
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 013316 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAF 110 (445)
Q Consensus 81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~ 110 (445)
+|..|.||||+|+..++.+++++|+++||+
T Consensus 97 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 97 KDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 999999999999999999999999999986
No 173
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=2.1e-16 Score=150.48 Aligned_cols=186 Identities=25% Similarity=0.308 Sum_probs=127.6
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|++.+++.+..++.. ....+++|+||||||||++|+++++.+..... ...++.+++
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~----------------~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~--~~~~~~~~~ 84 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKT----------------GSMPHLLFAGPPGVGKTTAALALARELFGENW--RHNFLELNA 84 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHH----------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGH--HHHEEEEET
T ss_pred CHHHhhCCHHHHHHHHHHHHc----------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc--cCceEEeec
Confidence 356799999999988876542 23457999999999999999999998753210 114777777
Q ss_pred ccccccccCCchhHHHHHH-----HHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchh
Q 013316 247 TDLVGEFVGHTGPKTRRRI-----KEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP 319 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~-----~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~ 319 (445)
++..+.- .....+.... ....++||||||+|.+.+ +.++.|+..++. ..+++|++++...
T Consensus 85 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 85 SDERGIN--VIREKVKEFARTKPIGGASFKIIFLDEADALTQ-----------DAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp TCHHHHH--TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cccCchH--HHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH-----------HHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 6542210 0011111111 114568999999999875 567778877764 4566666655432
Q ss_pred HHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchh
Q 013316 320 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL 399 (445)
Q Consensus 320 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~ 399 (445)
. ..+++++|| ..+.|++|+.+++.+++...+.+.. ..++++++..+. ..+ .||.|.
T Consensus 152 ~-----l~~~l~sr~-~~~~~~~l~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~l~-~~~------~g~~r~ 207 (327)
T 1iqp_A 152 K-----IIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAENEG-----------LELTEEGLQAIL-YIA------EGDMRR 207 (327)
T ss_dssp G-----SCHHHHHTE-EEEECCCCCHHHHHHHHHHHHHTTT-----------CEECHHHHHHHH-HHH------TTCHHH
T ss_pred c-----cCHHHHhhC-cEEEecCCCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHH-HHC------CCCHHH
Confidence 2 368889998 4899999999999999998887531 235666766544 455 678888
Q ss_pred hHHHHHHH
Q 013316 400 VDPMLVNA 407 (445)
Q Consensus 400 l~~~~~~~ 407 (445)
+.++++.+
T Consensus 208 ~~~~l~~~ 215 (327)
T 1iqp_A 208 AINILQAA 215 (327)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888876
No 174
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=1.2e-16 Score=153.98 Aligned_cols=187 Identities=20% Similarity=0.263 Sum_probs=125.0
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|++.+++.+..++. .....+++|+||||||||++|+++++.+..... ....++.+++
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~-~~~~~~~~~~ 97 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLK----------------SANLPHMLFYGPPGTGKTSTILALTKELYGPDL-MKSRILELNA 97 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTT----------------CTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHH-HTTSEEEECS
T ss_pred CHHHhhCCHHHHHHHHHHHh----------------cCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcc-cccceEEEcc
Confidence 46779999999988887532 233456999999999999999999999764200 0125777777
Q ss_pred cccccc-ccCCchhHHHHHHH---------------HccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--Cc
Q 013316 247 TDLVGE-FVGHTGPKTRRRIK---------------EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GK 308 (445)
Q Consensus 247 ~~l~~~-~~g~~~~~~~~~~~---------------~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~ 308 (445)
++..+. .+.. .+..... ...+.||||||+|.+.+ ..++.|+..+++ ..
T Consensus 98 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~-----------~~~~~Ll~~le~~~~~ 163 (353)
T 1sxj_D 98 SDERGISIVRE---KVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA-----------DAQSALRRTMETYSGV 163 (353)
T ss_dssp SSCCCHHHHTT---HHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-----------HHHHHHHHHHHHTTTT
T ss_pred ccccchHHHHH---HHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-----------HHHHHHHHHHHhcCCC
Confidence 664211 1110 1111111 12346999999999976 556777777764 33
Q ss_pred EEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHH
Q 013316 309 VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT 388 (445)
Q Consensus 309 ~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 388 (445)
..+|++++... ...|++++|| ..+.|++|+.+++..++...+.+.. ..++++++..+. ..+
T Consensus 164 ~~~il~~~~~~-----~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~~~~-----------~~i~~~~l~~l~-~~~- 224 (353)
T 1sxj_D 164 TRFCLICNYVT-----RIIDPLASQC-SKFRFKALDASNAIDRLRFISEQEN-----------VKCDDGVLERIL-DIS- 224 (353)
T ss_dssp EEEEEEESCGG-----GSCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHTTT-----------CCCCHHHHHHHH-HHT-
T ss_pred ceEEEEeCchh-----hCcchhhccC-ceEEeCCCCHHHHHHHHHHHHHHhC-----------CCCCHHHHHHHH-HHc-
Confidence 44455544332 2378899999 5899999999999999998876531 245667776555 444
Q ss_pred HhhhcccCchhhHHHHHHHH
Q 013316 389 EKQRREMNGGLVDPMLVNAR 408 (445)
Q Consensus 389 ~~~~~~~n~r~l~~~~~~~~ 408 (445)
.||.|.+.++++.+.
T Consensus 225 -----~G~~r~~~~~l~~~~ 239 (353)
T 1sxj_D 225 -----AGDLRRGITLLQSAS 239 (353)
T ss_dssp -----SSCHHHHHHHHHHTH
T ss_pred -----CCCHHHHHHHHHHHH
Confidence 367888888887763
No 175
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.70 E-value=2.1e-18 Score=143.63 Aligned_cols=133 Identities=15% Similarity=0.194 Sum_probs=97.2
Q ss_pred hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316 170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 249 (445)
Q Consensus 170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l 249 (445)
+++|.++.++++.+.+... .....+|+|+||||||||++|+++|+.+. +|+.++|+.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~--------------~~~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~ 62 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA--------------AKRTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARVEY 62 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH--------------HTCSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTH
T ss_pred CceeCCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechhhC
Confidence 3899999999888876644 23567899999999999999999987642 7899999887
Q ss_pred cccccCCchhHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC---CcEEEEEecCchhHHH-HHh
Q 013316 250 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKR-VIA 325 (445)
Q Consensus 250 ~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~i~a~~~~~~~~-~~~ 325 (445)
...+ ....++.+.+++|||||||.+.+ +.+..|++.+++ ..+.+|++++.+.... .-
T Consensus 63 ~~~~-------~~~~~~~a~~~~l~lDei~~l~~-----------~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~- 123 (143)
T 3co5_A 63 LIDM-------PMELLQKAEGGVLYVGDIAQYSR-----------NIQTGITFIIGKAERCRVRVIASCSYAAGSDGIS- 123 (143)
T ss_dssp HHHC-------HHHHHHHTTTSEEEEEECTTCCH-----------HHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--C-
T ss_pred ChHh-------hhhHHHhCCCCeEEEeChHHCCH-----------HHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhC-
Confidence 5433 56788889999999999999976 567777777764 4577888876553221 00
Q ss_pred hCcccccccc-cceeCCCC
Q 013316 326 SNEGFCRRVT-KFFHFNDF 343 (445)
Q Consensus 326 ~~~~l~~R~~-~~i~~~~~ 343 (445)
.++.|..||. ..|.+|++
T Consensus 124 ~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 124 CEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp HHHHHHHHSSSEEEEECCC
T ss_pred ccHHHHHHhcCcEEeCCCC
Confidence 2456677764 56788876
No 176
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.70 E-value=6e-17 Score=159.96 Aligned_cols=193 Identities=15% Similarity=0.193 Sum_probs=124.2
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHH--c-cCcEEEEcCccccc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--A-EGGILFVDEAYRLI 282 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~--a-~~~il~lDEid~l~ 282 (445)
+.+++|+||||||||++|++|++.+.... ...+++.++++.+...+.+.........|.. . ...||||||+|.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~ 207 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE--PDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLI 207 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHC--CSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC--CCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCccccc
Confidence 67899999999999999999999985531 1237888898877554433211111112222 2 56899999999998
Q ss_pred cCCCCCCchhHHHHHHHHHhh----ccCCcEEEEEecCchhHHHHHhhCcccccccc--cceeCCCCCHHHHHHHHHHHH
Q 013316 283 PMQKADDKDYGIEALEEIMSV----MDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKM 356 (445)
Q Consensus 283 ~~~~~~~~~~~~~~~~~ll~~----~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l 356 (445)
.+. ..++.|+.. .+.+..++|++.++.. .+...+++|++||. ..+.|++|+.+++.+|++..+
T Consensus 208 ~~~---------~~q~~l~~~l~~l~~~~~~iIitt~~~~~--~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~ 276 (440)
T 2z4s_A 208 GKT---------GVQTELFHTFNELHDSGKQIVICSDREPQ--KLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKML 276 (440)
T ss_dssp SCH---------HHHHHHHHHHHHHHTTTCEEEEEESSCGG--GCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHH
T ss_pred CCh---------HHHHHHHHHHHHHHHCCCeEEEEECCCHH--HHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 632 223333333 3445555555543222 11123788999996 789999999999999999988
Q ss_pred hcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHH
Q 013316 357 NNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAG 436 (445)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a 436 (445)
... ++. ++++++. .+...+ .+|.|++.++++++....... . ..||.+++.++
T Consensus 277 ~~~-------~~~----i~~e~l~-~la~~~------~gn~R~l~~~L~~~~~~a~~~---~-------~~It~~~~~~~ 328 (440)
T 2z4s_A 277 EIE-------HGE----LPEEVLN-FVAENV------DDNLRRLRGAIIKLLVYKETT---G-------KEVDLKEAILL 328 (440)
T ss_dssp HHH-------TCC----CCTTHHH-HHHHHC------CSCHHHHHHHHHHHHHHHHHS---S-------SCCCHHHHHHH
T ss_pred HHc-------CCC----CCHHHHH-HHHHhc------CCCHHHHHHHHHHHHHHHHHh---C-------CCCCHHHHHHH
Confidence 653 122 3444555 444554 789999999999985543211 0 13666666665
Q ss_pred HHH
Q 013316 437 LKL 439 (445)
Q Consensus 437 ~~~ 439 (445)
++.
T Consensus 329 l~~ 331 (440)
T 2z4s_A 329 LKD 331 (440)
T ss_dssp TST
T ss_pred HHH
Confidence 543
No 177
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=7.2e-16 Score=146.43 Aligned_cols=183 Identities=25% Similarity=0.261 Sum_probs=125.5
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.+++++|++..++.+.+++. .....+++|+||||||||++|+.+++.+..... ...++.+++
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~--~~~~~~~~~ 80 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAK----------------DGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY--ADGVLELNA 80 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHH----------------SCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH--HHHEEEECT
T ss_pred CHHHHHCCHHHHHHHHHHHH----------------cCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc--cCCEEEecC
Confidence 35679999999998888653 123345999999999999999999998743110 114677776
Q ss_pred ccccccccCCchhHHHHHHH----------HccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEe
Q 013316 247 TDLVGEFVGHTGPKTRRRIK----------EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFA 314 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~~----------~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a 314 (445)
++..+ ...++..++ ..++.||||||+|.+.. ..++.|+..++. ...++|++
T Consensus 81 ~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~~~~~~~il~ 143 (323)
T 1sxj_B 81 SDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-----------GAQQALRRTMELYSNSTRFAFA 143 (323)
T ss_dssp TSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-----------HHHHTTHHHHHHTTTTEEEEEE
T ss_pred ccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH-----------HHHHHHHHHHhccCCCceEEEE
Confidence 65321 223333332 12357999999999875 456667777764 45666666
Q ss_pred cCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcc
Q 013316 315 GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 394 (445)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 394 (445)
++... ...+++++|+ ..+.|++|+.+++.+++...+.+.. ..++++++..+. ..+ .
T Consensus 144 ~~~~~-----~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~l~-~~~------~ 199 (323)
T 1sxj_B 144 CNQSN-----KIIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKLED-----------VKYTNDGLEAII-FTA------E 199 (323)
T ss_dssp ESCGG-----GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHHHHHH-HHH------T
T ss_pred eCChh-----hchhHHHhhc-eEEeecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHH-HHc------C
Confidence 55432 2378899998 5899999999999999998886531 135566666444 444 5
Q ss_pred cCchhhHHHHHHHH
Q 013316 395 MNGGLVDPMLVNAR 408 (445)
Q Consensus 395 ~n~r~l~~~~~~~~ 408 (445)
||.|.+.++++.+.
T Consensus 200 G~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 200 GDMRQAINNLQSTV 213 (323)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 77778888887763
No 178
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.68 E-value=8.1e-17 Score=162.29 Aligned_cols=108 Identities=25% Similarity=0.259 Sum_probs=93.0
Q ss_pred CCccCccCC-------CCCchHhHHHHH---cCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCC
Q 013316 2 QKNQDRRSR-------SAKPATIHGCAQ---SGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWP 71 (445)
Q Consensus 2 ~~~~~~~~~-------~~~~t~L~~A~~---~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~ 71 (445)
+.|++++.. ..|.||||+||. .|+.++++.||. .|+++|..|. .|+||||+|+.+|+.+++++|+++
T Consensus 153 ~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~-~ga~vn~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~- 229 (497)
T 3lvq_E 153 ANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAKAA-DGNTALHYAALYNQPDCLKLLLKG- 229 (497)
T ss_dssp HTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHH-HSCCTTCCCS-SSCCHHHHHTTTTCHHHHHHHHHT-
T ss_pred hhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHH-cCCCCCccCC-CCCcHHHHHHHcCCHHHHHHHHHc-
Confidence 456776644 379999999977 899999998886 5899999997 799999999999999999999995
Q ss_pred CCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 013316 72 GNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA 115 (445)
Q Consensus 72 ~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~ 115 (445)
|++++.+|..|.||||+|+..|+.+++++|+++|++++...
T Consensus 230 ---ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~ 270 (497)
T 3lvq_E 230 ---RALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFP 270 (497)
T ss_dssp ---CCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------
T ss_pred ---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCCc
Confidence 89999999999999999999999999999999999988743
No 179
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.68 E-value=2.3e-17 Score=143.56 Aligned_cols=159 Identities=16% Similarity=0.253 Sum_probs=110.2
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcC---CCCCCCeEE
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTE 243 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~---~~~~~~~~~ 243 (445)
.+++++|.+...+.+.+.+. ...+.+++|+||||||||++|+.+++.+.... .....+++.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~----------------~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILS----------------RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS 83 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred ccchhhcchHHHHHHHHHHh----------------CCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence 45679999987777766432 23467899999999999999999999985421 112336777
Q ss_pred eecccccc--cccCCchhHHHHHHHHc----cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316 244 VQRTDLVG--EFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 317 (445)
Q Consensus 244 ~~~~~l~~--~~~g~~~~~~~~~~~~a----~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~ 317 (445)
++++.+.. .+.|.....+..++... .+.+|||||+|.+.+.+.... ...++++.|...++.+.+++|++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~--~~~~~~~~l~~~~~~~~~~ii~~~~~ 161 (187)
T 2p65_A 84 LDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE--GALDAGNILKPMLARGELRCIGATTV 161 (187)
T ss_dssp ECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT--TSCCTHHHHHHHHHTTCSCEEEEECH
T ss_pred EeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc--cchHHHHHHHHHHhcCCeeEEEecCH
Confidence 77766542 23333344455555433 346999999999986543111 11244566667777888999999988
Q ss_pred hhHHHHHhhCcccccccccceeCCCCC
Q 013316 318 EPMKRVIASNEGFCRRVTKFFHFNDFN 344 (445)
Q Consensus 318 ~~~~~~~~~~~~l~~R~~~~i~~~~~~ 344 (445)
.........++++++||. .+.++.|+
T Consensus 162 ~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 162 SEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp HHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred HHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 776655666999999996 59999886
No 180
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.68 E-value=9.3e-17 Score=165.14 Aligned_cols=147 Identities=14% Similarity=0.200 Sum_probs=99.4
Q ss_pred HHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-----------------------cEEEEEecCchhH
Q 013316 264 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSEPM 320 (445)
Q Consensus 264 ~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------------------~~~~i~a~~~~~~ 320 (445)
.+..+.+++|||||++.+.+ .+++.|++.|+++ ++.+|++|++...
T Consensus 196 ~~~~a~~gvL~LDEi~~l~~-----------~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~ 264 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIATLSL-----------KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTV 264 (604)
T ss_dssp HHHHTTTSEEEETTGGGSCH-----------HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHH
T ss_pred eeeecCCCEEEEechhhCCH-----------HHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHH
Confidence 56778899999999999865 7788888888732 4568888887654
Q ss_pred HHHHhhCcccccccc---cceeCCCC---CHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHH--HHhh-
Q 013316 321 KRVIASNEGFCRRVT---KFFHFNDF---NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET--TEKQ- 391 (445)
Q Consensus 321 ~~~~~~~~~l~~R~~---~~i~~~~~---~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~- 391 (445)
.. .+|+|++||. ..+.|+.. +.+.+..+++.+..+... . .....++++++..++.+++ .++.
T Consensus 265 ~~---l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~----~--~~~~~ls~eAl~~Li~~~~r~~g~r~ 335 (604)
T 3k1j_A 265 DK---MHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKR----D--GKIPHFTKEAVEEIVREAQKRAGRKG 335 (604)
T ss_dssp HH---SCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHH----H--CSSCCBBHHHHHHHHHHHHHTTCSTT
T ss_pred hh---cCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhh----c--cCcccCCHHHHHHHHHHHhhhhcccc
Confidence 44 3999999996 45666554 355566666544433211 0 1234788899999988776 2221
Q ss_pred hcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHH
Q 013316 392 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 439 (445)
Q Consensus 392 ~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 439 (445)
+.+.|.|++.++++.|...+.. +....|+.+|+.+|++.
T Consensus 336 ~l~~~~R~l~~llr~A~~~A~~---------~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 336 HLTLRLRDLGGIVRAAGDIAVK---------KGKKYVEREDVIEAVKM 374 (604)
T ss_dssp EEECCHHHHHHHHHHHHHHHHH---------TTCSSBCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHh---------cCcccccHHHHHHHHHh
Confidence 1245899999999988433221 12236889999888853
No 181
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.67 E-value=1.7e-15 Score=146.90 Aligned_cols=186 Identities=17% Similarity=0.201 Sum_probs=127.8
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCC-------
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------- 239 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~------- 239 (445)
.|++++|++..++.+.+.+.. ...+..++|+||||||||++|+.+++.+.........
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~---------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 78 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSL---------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 78 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHH---------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHH
T ss_pred chhhccCcHHHHHHHHHHHHh---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 356799999999888876542 2234568999999999999999999988653211111
Q ss_pred ----------CeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHh
Q 013316 240 ----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS 302 (445)
Q Consensus 240 ----------~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~ 302 (445)
.++.++.+.- .....++.+++.+ .+.||||||+|.+.. ..++.|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~Ll~ 141 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLK 141 (373)
T ss_dssp HHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-----------HHHHHHHH
T ss_pred HHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH-----------HHHHHHHH
Confidence 1222222110 1123345555543 247999999999865 56778888
Q ss_pred hccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHH
Q 013316 303 VMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 380 (445)
Q Consensus 303 ~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 380 (445)
.+++ ..+++|++++.... ..+.+++|+ ..+.|++|+.+++.+++..++.+.. ..++++++.
T Consensus 142 ~le~~~~~~~~Il~~~~~~~-----l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~-----------~~~~~~a~~ 204 (373)
T 1jr3_A 142 TLEEPPEHVKFLLATTDPQK-----LPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEH-----------IAHEPRALQ 204 (373)
T ss_dssp HHHSCCSSEEEEEEESCGGG-----SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHHH
T ss_pred HHhcCCCceEEEEEeCChHh-----CcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHH
Confidence 8875 56677776654431 267888898 8999999999999999999887531 235566666
Q ss_pred HHHHHHHHHhhhcccCchhhHHHHHHHH
Q 013316 381 ALIEKETTEKQRREMNGGLVDPMLVNAR 408 (445)
Q Consensus 381 ~~~~~~~~~~~~~~~n~r~l~~~~~~~~ 408 (445)
.+. ..+ .||.|.+.++++++.
T Consensus 205 ~l~-~~~------~G~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 205 LLA-RAA------EGSLRDALSLTDQAI 225 (373)
T ss_dssp HHH-HHS------SSCHHHHHHHHHHHH
T ss_pred HHH-HHC------CCCHHHHHHHHHHHH
Confidence 443 444 678888888888874
No 182
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.67 E-value=1.6e-16 Score=154.77 Aligned_cols=229 Identities=13% Similarity=0.102 Sum_probs=144.3
Q ss_pred HhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 013316 169 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 248 (445)
Q Consensus 169 ~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~ 248 (445)
++++|.+...+.+.+++.... ....+..++|+||||||||++|+.+++.+...... ..+++.+++..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~------------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-~~~~~~i~~~~ 86 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLY------------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-KFKHVYINTRQ 86 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGG------------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-SCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHHH------------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-CceEEEEECCC
Confidence 458999988888877543221 12456789999999999999999999988542100 22677888664
Q ss_pred ccc------c----------ccCCchhHHH-H---HHHHcc-CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhc---
Q 013316 249 LVG------E----------FVGHTGPKTR-R---RIKEAE-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM--- 304 (445)
Q Consensus 249 l~~------~----------~~g~~~~~~~-~---~~~~a~-~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~--- 304 (445)
... . ..|.+...+. . .+.... +.||||||++.+..... .+.+..|+..+
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-------~~~l~~l~~~~~~~ 159 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-------DDILYKLSRINSEV 159 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-------STHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-------CHHHHHHhhchhhc
Confidence 211 1 0122222222 2 222222 57999999999986431 14566666666
Q ss_pred cCCcEEEEEecCchhHHHHHhhCcccccccc-cceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHH
Q 013316 305 DGGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALI 383 (445)
Q Consensus 305 ~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 383 (445)
...++.+|++++..+... ..++.+.+||. ..+.|++|+.+++.+++...+.+.. . ...++++++..+.
T Consensus 160 ~~~~~~~I~~~~~~~~~~--~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~--------~-~~~~~~~~~~~l~ 228 (386)
T 2qby_A 160 NKSKISFIGITNDVKFVD--LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF--------K-PGVLPDNVIKLCA 228 (386)
T ss_dssp CC--EEEEEEESCGGGGG--GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB--------C-SSCSCHHHHHHHH
T ss_pred CCCeEEEEEEECCCChHh--hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc--------c-CCCCCHHHHHHHH
Confidence 456788888877654321 23678888986 5899999999999999998876421 0 2345666665444
Q ss_pred HHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316 384 EKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 441 (445)
Q Consensus 384 ~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 441 (445)
..+. ...||.|.+.++++.+...... ++...|+.+|+.+++..+.
T Consensus 229 -~~~~---~~~G~~r~~~~ll~~a~~~a~~---------~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 229 -ALAA---REHGDARRALDLLRVSGEIAER---------MKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp -HHHH---HTTCCHHHHHHHHHHHHHHHHH---------TTCSSCCHHHHHHHHHHHH
T ss_pred -HHHH---HhcCCHHHHHHHHHHHHHHHHh---------cCCCccCHHHHHHHHHHHh
Confidence 3331 1237888888888877433221 1223688888888776543
No 183
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.67 E-value=1.4e-15 Score=148.37 Aligned_cols=226 Identities=17% Similarity=0.197 Sum_probs=145.0
Q ss_pred HhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCC--eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 169 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP--HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 169 ~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
++++|.+...+.+.+++..... ...+. +++|+||||||||++++.++..+.... ...++.++|
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~------------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~i~~ 81 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLR------------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT---TARFVYING 81 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHH------------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC---CCEEEEEET
T ss_pred CCCCChHHHHHHHHHHHHHHHc------------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc---CeeEEEEeC
Confidence 3589999888888886654321 12334 899999999999999999999886431 226788887
Q ss_pred ccccc------c---cc-------CCchhHHHH----HHHHc-cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhcc
Q 013316 247 TDLVG------E---FV-------GHTGPKTRR----RIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 305 (445)
Q Consensus 247 ~~l~~------~---~~-------g~~~~~~~~----~~~~a-~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~ 305 (445)
+.... . .+ |.....+.+ .+... .+.||||||+|.+.+ ..+..|+..++
T Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~-----------~~~~~L~~~~~ 150 (389)
T 1fnn_A 82 FIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAP-----------DILSTFIRLGQ 150 (389)
T ss_dssp TTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCH-----------HHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccch-----------HHHHHHHHHHH
Confidence 65321 0 11 112222222 22222 356999999999833 66777777775
Q ss_pred C------CcEEEEEecCchhHHHHHhhCccccccccc-ceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHH
Q 013316 306 G------GKVVVIFAGYSEPMKRVIASNEGFCRRVTK-FFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 378 (445)
Q Consensus 306 ~------~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~-~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 378 (445)
. .++.+|++++...... ..++.+.+||.. .+.|++|+.+++.+++...+..... ...+++++
T Consensus 151 ~~~~~~~~~~~iI~~~~~~~~~~--~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~---------~~~~~~~~ 219 (389)
T 1fnn_A 151 EADKLGAFRIALVIVGHNDAVLN--NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA---------EGSYSEDI 219 (389)
T ss_dssp CHHHHSSCCEEEEEEESSTHHHH--TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC---------TTSSCHHH
T ss_pred hCCCCCcCCEEEEEEECCchHHH--HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC---------CCCCCHHH
Confidence 3 4677777766543322 237888889864 7999999999999999998864210 12466677
Q ss_pred HHHHHHHHHHH--hhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316 379 IAALIEKETTE--KQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440 (445)
Q Consensus 379 l~~~~~~~~~~--~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 440 (445)
+..+....|.. .....||.|.+.++++.+....... +...|+.+++.+++..+
T Consensus 220 ~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~---------~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 220 LQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQN---------GRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp HHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHT---------TCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHh---------CCCCcCHHHHHHHHHHH
Confidence 77555444300 0001588889999998875433211 12357777777776543
No 184
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.66 E-value=1.1e-16 Score=126.96 Aligned_cols=87 Identities=26% Similarity=0.402 Sum_probs=45.7
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~ 91 (445)
.|.||||+||..|+.++++.|+. .+.+++..+. .|+||||+|+..|+.+++++|+++ |++++.+|..|.||||+
T Consensus 23 ~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~d~-~g~tpLh~A~~~~~~~~v~~Ll~~----ga~~~~~d~~g~tpl~~ 96 (110)
T 2zgd_A 23 DLGKKLLEAARAGQDDEVRILMA-NGADVAAKDK-NGSTPLHLAARNGHLEVVKLLLEA----GADVXAQDKFGKTAFDI 96 (110)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHH-cCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCccccccCCCcHHHH
Confidence 45555555555555555554443 3445555543 455555555555555555555553 44555555555555555
Q ss_pred HHHcCCHHHHHHH
Q 013316 92 AAKNGCNEAAKLL 104 (445)
Q Consensus 92 A~~~g~~~~~~~L 104 (445)
|+..|+.+++++|
T Consensus 97 A~~~~~~~~~~~L 109 (110)
T 2zgd_A 97 SIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHh
Confidence 5555555555443
No 185
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.66 E-value=3.1e-17 Score=147.27 Aligned_cols=112 Identities=20% Similarity=0.203 Sum_probs=88.8
Q ss_pred CCccCccCCC-CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc
Q 013316 2 QKNQDRRSRS-AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (445)
Q Consensus 2 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~ 80 (445)
+.|++++..+ .|.||||+||..|+.++++.|+...+++++..+. .|+||||+|+..|+.+++++|+++ |++++.
T Consensus 94 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~----ga~~~~ 168 (222)
T 3ehr_A 94 DNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNK-LGDTALHAAAWKGYADIVQLLLAK----GARTDL 168 (222)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCT-TSCCHHHHHHHHTCHHHHHHHHHH----TCCSCC
T ss_pred hCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCcc
Confidence 4677888665 6999999999999999999888766999999997 799999999999999999999995 899999
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCC
Q 013316 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEG 118 (445)
Q Consensus 81 ~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g 118 (445)
+|..|.||||+|+..++.++++.|+..|+..+..+..+
T Consensus 169 ~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 169 RNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp CCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred ccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 99999999999999999999999999999988777654
No 186
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.66 E-value=3.4e-16 Score=123.99 Aligned_cols=93 Identities=32% Similarity=0.413 Sum_probs=83.3
Q ss_pred cCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccccCCC
Q 013316 40 LNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANEGK 119 (445)
Q Consensus 40 ~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~~~g~ 119 (445)
.+..+. .|+||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+
T Consensus 17 ~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~----g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~ 91 (110)
T 2zgd_A 17 GSHMGS-DLGKKLLEAARAGQDDEVRILMAN----GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK 91 (110)
T ss_dssp -----C-CHHHHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred ccccCC-ccchHHHHHHHcCCHHHHHHHHHc----CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCC
Confidence 344554 699999999999999999999995 889999999999999999999999999999999999999999999
Q ss_pred ChhhhhhcCCCChHHHHHH
Q 013316 120 TPLDHLSNGPGSAKLRELL 138 (445)
Q Consensus 120 tpl~~~a~~~~~~~i~~~l 138 (445)
||| ++|+..++.+++++|
T Consensus 92 tpl-~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 92 TAF-DISIDNGNEDLAEIL 109 (110)
T ss_dssp CHH-HHHHHHTCHHHHHHH
T ss_pred cHH-HHHHHcCCHHHHHHh
Confidence 999 788888999999876
No 187
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.66 E-value=1.5e-17 Score=160.85 Aligned_cols=126 Identities=15% Similarity=0.059 Sum_probs=102.4
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCC--cCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcc---cccccCCCC
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSL--LNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE---LEAQNMYGE 86 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~--~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~---v~~~d~~g~ 86 (445)
.+.||||+||..|+.++++.|+...... .+..+. .|.||||+||.+|+.++|++|+++ |++ .+..+.. .
T Consensus 91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~-~~~tpL~~Aa~~G~~eiv~~Ll~~----gad~~~~~i~~~~-~ 164 (376)
T 2aja_A 91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA-ENYQAFRLAAENGHLHVLNRLCEL----APTEIMAMIQAEN-Y 164 (376)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CH-HHHHHHHHHHHTTCHHHHHHHHHS----CTTTHHHHHSHHH-H
T ss_pred CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhcc-CCCCHHHHHHHcCCHHHHHHHHhC----CCCccccccCCCC-C
Confidence 3569999999999999999888653211 112232 478999999999999999999996 544 2333333 8
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCCcc--cccCCCChhhhhhc-CCCChHHHHHHHhhhhh
Q 013316 87 TPLHMAAKNGCNEAAKLLLAHGAFIEA--KANEGKTPLDHLSN-GPGSAKLRELLLWHSEE 144 (445)
Q Consensus 87 tpLh~A~~~g~~~~~~~Ll~~ga~~~~--~~~~g~tpl~~~a~-~~~~~~i~~~ll~~~~~ 144 (445)
||||+|+..|+.+++++|+++|++++. .|..|.||| ++|+ ..++.+++++|++.++.
T Consensus 165 TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL-~~Aa~~~G~~eiv~~Ll~~ga~ 224 (376)
T 2aja_A 165 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAF-RWAAVGRGHHNVINFLLDCPVM 224 (376)
T ss_dssp HHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHH-HHHHSTTCCHHHHHHHTTSHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHH-HHHHHHCCCHHHHHHHHhCCCc
Confidence 999999999999999999999999988 999999999 7777 99999999999987743
No 188
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.66 E-value=3.6e-16 Score=145.25 Aligned_cols=94 Identities=26% Similarity=0.281 Sum_probs=88.2
Q ss_pred CCCchHhHHHHHc---CCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCc
Q 013316 11 SAKPATIHGCAQS---GDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (445)
Q Consensus 11 ~~~~t~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~t 87 (445)
..|.||||+||.. |+.++++.|+.. |+++|.+|. .|+||||+|+..|+.+++++|+++ |++++.+|..|.|
T Consensus 167 ~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~----gad~~~~d~~g~t 240 (278)
T 1dcq_A 167 EPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTG-KGSTALHYCCLTDNAECLKLLLRG----KASIEIANESGET 240 (278)
T ss_dssp STTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCC
T ss_pred cCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCC-CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCCccCCCCC
Confidence 4699999999999 899999988764 899999997 799999999999999999999995 8999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCC
Q 013316 88 PLHMAAKNGCNEAAKLLLAHGAF 110 (445)
Q Consensus 88 pLh~A~~~g~~~~~~~Ll~~ga~ 110 (445)
|||+|+..|+.+++++|+++|++
T Consensus 241 pL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 241 PLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999986
No 189
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.66 E-value=8.2e-17 Score=164.37 Aligned_cols=210 Identities=16% Similarity=0.177 Sum_probs=126.1
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccccc-----CCchhHHHHHHHHccCcEEEEcCcccc
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFV-----GHTGPKTRRRIKEAEGGILFVDEAYRL 281 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~-----g~~~~~~~~~~~~a~~~il~lDEid~l 281 (445)
.++||+||||||||++|+++|+.+.+.... .. ...+++.+.+... |.. ......+..|.++|+||||||++
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~~r~~~~-~~--~~~~~~~l~~~~~~~~~~g~~-~~~~G~l~~A~~gil~IDEid~l 403 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVAPRAVYT-TG--KGSTAAGLTAAVVREKGTGEY-YLEAGALVLADGGIAVIDEIDKM 403 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTCSCEECC-CT--TCSTTTTSEEECSSGGGTSSC-SEEECHHHHHSSSEECCTTTTCC
T ss_pred cceEEECCCchHHHHHHHHHHHhCCCceec-CC--Cccccccccceeeeccccccc-cccCCeeEecCCCcEEeehhhhC
Confidence 389999999999999999999887542110 00 0022223322211 111 01123556788999999999999
Q ss_pred ccCCCCCCchhHHHHHHHHHhhccCCc---------------EEEEEecCchh--HH------HHHhhCcccccccccce
Q 013316 282 IPMQKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEP--MK------RVIASNEGFCRRVTKFF 338 (445)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------~~~i~a~~~~~--~~------~~~~~~~~l~~R~~~~i 338 (445)
.+ +.++.|++.|+++. +.+|+|+++.. ++ .-+..+++|++|||..+
T Consensus 404 ~~-----------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~ 472 (595)
T 3f9v_A 404 RD-----------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIF 472 (595)
T ss_dssp CS-----------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCE
T ss_pred CH-----------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEE
Confidence 87 77888999888643 35777777642 00 00144799999998655
Q ss_pred -eCCCCCHHHHHHHHHHHHhccccccccccc--------------ccCCcccHHHHHHHHHHHHH--------Hhhhccc
Q 013316 339 -HFNDFNSEELAKILHIKMNNQTEDSLLYGF--------------KLHSSCSMDAIAALIEKETT--------EKQRREM 395 (445)
Q Consensus 339 -~~~~~~~~~~~~il~~~l~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~--------~~~~~~~ 395 (445)
..+.|+.+ ...|+++.+...........+ .+.+.++.++...+...+.. ++...++
T Consensus 473 ~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~ 551 (595)
T 3f9v_A 473 ILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILI 551 (595)
T ss_dssp EECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCS
T ss_pred EeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccc
Confidence 45555555 778888877654311000000 01223444444433333221 0013588
Q ss_pred CchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHHH
Q 013316 396 NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 441 (445)
Q Consensus 396 n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 441 (445)
+.|.+.+++..|...+..+. ...|+.+|+.+|+.-+.
T Consensus 552 s~R~l~~lirla~a~A~l~~---------~~~V~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 552 TPRQLEALIRISEAYAKMAL---------KAEVTREDAERAINIMR 588 (595)
T ss_dssp STTTTTHHHHHHHHHHHTTS---------SCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHH
Confidence 99999999998855443322 23699999999997654
No 190
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=4.5e-15 Score=142.07 Aligned_cols=181 Identities=20% Similarity=0.254 Sum_probs=118.7
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeec
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 246 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~ 246 (445)
.|++++|++.+++.|...+. .+..++++|+||||||||++|+++++.+..... ...+..++.
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~----------------~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~--~~~~~~~~~ 84 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVD----------------EGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY--SNMVLELNA 84 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHH----------------TTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH--HHHEEEECT
T ss_pred cHHHhcCcHHHHHHHHHHHh----------------cCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc--cceEEEEcC
Confidence 46678999998888887554 123346999999999999999999999854210 113566666
Q ss_pred ccccccccCCchhHHHHHH---HH------ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEec
Q 013316 247 TDLVGEFVGHTGPKTRRRI---KE------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG 315 (445)
Q Consensus 247 ~~l~~~~~g~~~~~~~~~~---~~------a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~ 315 (445)
++..+ ...+++.+ .+ ....|++|||+|.+.. ..++.|+..++. ....+|+++
T Consensus 85 ~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 85 SDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN-----------AAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp TSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH-----------HHHHHHHHHHHHTTTTEEEEEEE
T ss_pred ccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhcCCCCeEEEEEe
Confidence 54211 12223222 21 1358999999999875 566777777764 345555555
Q ss_pred CchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhccc
Q 013316 316 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 395 (445)
Q Consensus 316 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 395 (445)
+... ...|++++|| ..+.|++++.+++.+++...+.+.. ..++++++. .+...++ |
T Consensus 148 n~~~-----~i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~~~~~-----------~~i~~~~~~-~i~~~s~------G 203 (340)
T 1sxj_C 148 NYAH-----KLTPALLSQC-TRFRFQPLPQEAIERRIANVLVHEK-----------LKLSPNAEK-ALIELSN------G 203 (340)
T ss_dssp SCGG-----GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHTTT-----------CCBCHHHHH-HHHHHHT------T
T ss_pred cCcc-----ccchhHHhhc-eeEeccCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHH-HHHHHcC------C
Confidence 4332 2378899998 5899999999999999998886531 134555655 4556663 4
Q ss_pred CchhhHHHHHH
Q 013316 396 NGGLVDPMLVN 406 (445)
Q Consensus 396 n~r~l~~~~~~ 406 (445)
+.|.+.++++.
T Consensus 204 ~~r~~~~~l~~ 214 (340)
T 1sxj_C 204 DMRRVLNVLQS 214 (340)
T ss_dssp CHHHHHHHTTT
T ss_pred CHHHHHHHHHH
Confidence 44444444443
No 191
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.63 E-value=2.1e-17 Score=159.76 Aligned_cols=122 Identities=12% Similarity=0.083 Sum_probs=105.0
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCC---cCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccccc--ccCCCC
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSL---LNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA--QNMYGE 86 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~---~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~--~d~~g~ 86 (445)
.|.||||+||..|+.++++.|+.. +++ .+..+. ++||||+||..|+.++|++|+++ |++++. .|..|.
T Consensus 127 ~~~tpL~~Aa~~G~~eiv~~Ll~~-gad~~~~~i~~~--~~TpLh~Aa~~G~~eiv~~Ll~~----ga~~~~~~~d~~g~ 199 (376)
T 2aja_A 127 ENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAE--NYHAFRLAAENGHLHVLNRLCEL----APTEATAMIQAENY 199 (376)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHH--HHHHHHHHHHTTCHHHHHHHHHS----CGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhC-CCCccccccCCC--CCCHHHHHHHCCCHHHHHHHHHc----CCccchhccCCCCC
Confidence 578999999999999999988865 543 222222 27999999999999999999995 888877 888899
Q ss_pred cHHHHHH-HcCCHHHHHHHHhcCCCCcccccCCCChhhhhhcCCCChHHHHHHHhhhhhHHhh
Q 013316 87 TPLHMAA-KNGCNEAAKLLLAHGAFIEAKANEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 148 (445)
Q Consensus 87 tpLh~A~-~~g~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~ 148 (445)
||||+|+ ..|+.+++++|++.|++ |.||+ +.|+..++.+++++|++++++...+
T Consensus 200 TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL-~~Aa~~g~~evv~lL~~~ga~~~~~ 254 (376)
T 2aja_A 200 YAFRWAAVGRGHHNVINFLLDCPVM-------LAYAE-IHEFEYGEKYVNPFIARHVNRLKEM 254 (376)
T ss_dssp HHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHH-HCTTTTTTTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhCCCc-------cchHH-HHHHHCCCHHHHHHHHhcCcccccc
Confidence 9999999 99999999999998753 88999 8888999999999999999886554
No 192
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.62 E-value=3.3e-16 Score=136.11 Aligned_cols=107 Identities=22% Similarity=0.273 Sum_probs=96.6
Q ss_pred CCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccc-cCCCChhhhh
Q 013316 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-NEGKTPLDHL 125 (445)
Q Consensus 47 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~~~~~~-~~g~tpl~~~ 125 (445)
.|+||||+|+..|+.+++++|++ |++++.+|..|.||||+|+..|+.+++++|+++|++++.++ ..|+||| |+
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL-~~ 116 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL-HM 116 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT-----TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHH-HH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh-----cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHH-HH
Confidence 58899999999999999999998 57899999999999999999999999999999999999998 8999999 78
Q ss_pred hcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhHH
Q 013316 126 SNGPGSAKLRELLLWHSEEQRKRRALEACSETKA 159 (445)
Q Consensus 126 a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~a 159 (445)
|+..++.+++++|+++++++..++..+.++...+
T Consensus 117 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A 150 (183)
T 3deo_A 117 AAGYVRPEVVEALVELGADIEVEDERGLTALELA 150 (183)
T ss_dssp HHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred HHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHH
Confidence 8889999999999999998877766665555443
No 193
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.62 E-value=8.2e-16 Score=148.07 Aligned_cols=115 Identities=19% Similarity=0.232 Sum_probs=93.0
Q ss_pred CCccCccCCC---CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCccc
Q 013316 2 QKNQDRRSRS---AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL 78 (445)
Q Consensus 2 ~~~~~~~~~~---~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v 78 (445)
+.|++++..+ .|.||||+||..|+.++++.|+. .++++|..+. .|+||||+|+..|+.+++++|+++ |+++
T Consensus 221 ~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~-~Gadvn~~d~-~G~TpLh~A~~~g~~~~v~~LL~~----Gad~ 294 (368)
T 3jue_A 221 AHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ-NGANVNQADS-AGRGPLHHATILGHTGLACLFLKR----GADL 294 (368)
T ss_dssp HTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHT----TCCT
T ss_pred HcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCCCC-CCCCHHHHHHHcCcHHHHHHHHHC----cCCC
Confidence 4678888764 69999999999999999988775 5899999997 799999999999999999999995 8999
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHhcCCC---CcccccCCCChh
Q 013316 79 EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF---IEAKANEGKTPL 122 (445)
Q Consensus 79 ~~~d~~g~tpLh~A~~~g~~~~~~~Ll~~ga~---~~~~~~~g~tpl 122 (445)
+.+|..|.||||+|+..++.+++++|+..+.. ....+..+.|++
T Consensus 295 ~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l 341 (368)
T 3jue_A 295 GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYL 341 (368)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------
T ss_pred CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHH
Confidence 99999999999999999999999999987643 345566677777
No 194
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=3e-15 Score=144.15 Aligned_cols=188 Identities=18% Similarity=0.207 Sum_probs=119.1
Q ss_pred HHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCC-----------
Q 013316 167 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI----------- 235 (445)
Q Consensus 167 ~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~----------- 235 (445)
.|++++|++.+++.+.+++. ......+++|+||||||||++|+++++.+..+..
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~---------------~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSD---------------QPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTT---------------CTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred CHHHhcCCHHHHHHHHHHHh---------------hCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 35779999998887776430 1223345999999999999999999997633211
Q ss_pred -----------CCCCCeEEeecccccccccCC-chhHHHHHHHHc-----------------cCcEEEEcCccccccCCC
Q 013316 236 -----------LPTDRVTEVQRTDLVGEFVGH-TGPKTRRRIKEA-----------------EGGILFVDEAYRLIPMQK 286 (445)
Q Consensus 236 -----------~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~a-----------------~~~il~lDEid~l~~~~~ 286 (445)
+....++.++.+.. +. ....+++.++.. ++.||+|||++.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~--- 148 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDM-----GNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK--- 148 (354)
T ss_dssp ---------CCEECSSEEEECCC---------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH---
T ss_pred ccccccceeeeecccceEEecHhhc-----CCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH---
Confidence 00112333332211 11 111234433321 345999999999754
Q ss_pred CCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhccccccc
Q 013316 287 ADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSL 364 (445)
Q Consensus 287 ~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~ 364 (445)
..++.|++.+++ ....+|++++.... ..|++++|| ..+.|++|+.+++.++++..+.+.
T Consensus 149 --------~~~~~L~~~le~~~~~~~~Il~t~~~~~-----l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~----- 209 (354)
T 1sxj_E 149 --------DAQAALRRTMEKYSKNIRLIMVCDSMSP-----IIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNE----- 209 (354)
T ss_dssp --------HHHHHHHHHHHHSTTTEEEEEEESCSCS-----SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHH-----
T ss_pred --------HHHHHHHHHHHhhcCCCEEEEEeCCHHH-----HHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHc-----
Confidence 556667776653 34555555443221 267899999 899999999999999999888753
Q ss_pred ccccccCCccc-HHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 365 LYGFKLHSSCS-MDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 365 ~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
++ .++ ++++..+. ..+ .||.|.+.++++.+..
T Consensus 210 --~~----~~~~~~~l~~i~-~~~------~G~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 210 --RI----QLETKDILKRIA-QAS------NGNLRVSLLMLESMAL 242 (354)
T ss_dssp --TC----EECCSHHHHHHH-HHH------TTCHHHHHHHHTHHHH
T ss_pred --CC----CCCcHHHHHHHH-HHc------CCCHHHHHHHHHHHHH
Confidence 12 234 45665443 444 6778888888887754
No 195
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.60 E-value=6.1e-16 Score=140.95 Aligned_cols=136 Identities=18% Similarity=0.159 Sum_probs=108.8
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCcCCCCCCCCChHHHHHHhCCcHHHHHHhhcCCCCCCcccccccCCCCcHHHH
Q 013316 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (445)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~g~~v~~~d~~g~tpLh~ 91 (445)
.+.++++.++..|+.+.+..+. ..+.++ +. .|.||||+|+..|+.+++++|++ |+++|.+|..|.||||+
T Consensus 14 ~~~~~~l~~~~~g~~~~~~~~~-~~~~~~---~~-~g~t~L~~A~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~ 83 (244)
T 3ui2_A 14 EGAMEYLIEWKDGHSPSWVPSS-YIAADV---VS-EYETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALLF 83 (244)
T ss_dssp TTEEEEEEEESSCCCCEEEEGG-GSCHHH---HH-HHHHHHHHHHTTTCHHHHHHTTT-----TCCTTCBCTTSCBHHHH
T ss_pred CCccHHHHHHHcCCCccccccc-cccccc---cc-CCCCHHHHHHHcCCHHHHHHHHc-----CCCCCCcCCCCCCHHHH
Confidence 4555666666666654443221 112222 22 48899999999999999999998 57899999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCcccc-cCCCChhhhhhcCCCChHHHHHHHhhhhhHHhhhhhhhhhhhH
Q 013316 92 AAKNGCNEAAKLLLAHGAFIEAKA-NEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETK 158 (445)
Q Consensus 92 A~~~g~~~~~~~Ll~~ga~~~~~~-~~g~tpl~~~a~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~ 158 (445)
|+..|+.+++++|+++|++++.++ ..|+||| |+|+..++.+++++|+.+++++..++..+.++...
T Consensus 84 A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~ 150 (244)
T 3ui2_A 84 VAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL-HMAAGYVRPEVVEALVELGADIEVEDERGLTALEL 150 (244)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred HHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 999999999999999999999998 8899999 78888999999999999999887776655555443
No 196
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.50 E-value=4.2e-13 Score=127.84 Aligned_cols=132 Identities=11% Similarity=0.074 Sum_probs=91.2
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCC-----------------CCCeEEeecccccccccCCchhHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-----------------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE 267 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~-----------------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 267 (445)
.+..+||+||||||||++|+++++.+....... ...+..+.+.+- +. ......++.+++.
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~--~~~i~~ir~l~~~ 99 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KN--TLGVDAVREVTEK 99 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CS--SBCHHHHHHHHHH
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CC--CCCHHHHHHHHHH
Confidence 455699999999999999999999987533110 012333332200 00 0122345666655
Q ss_pred c-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHHHhhCcccccccccce
Q 013316 268 A-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFF 338 (445)
Q Consensus 268 a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i 338 (445)
+ ...|++|||+|.+.. ++++.|++.+++ ...++|++++... ...|++++|+ ..+
T Consensus 100 ~~~~~~~~~~kvviIdead~l~~-----------~a~naLLk~lEep~~~~~~Il~t~~~~-----~l~~ti~SRc-~~~ 162 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLTD-----------AAANALLKTLEEPPAETWFFLATREPE-----RLLATLRSRC-RLH 162 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBCH-----------HHHHHHHHHHTSCCTTEEEEEEESCGG-----GSCHHHHTTS-EEE
T ss_pred HhhccccCCcEEEEECchhhcCH-----------HHHHHHHHHhcCCCCCeEEEEEeCChH-----hCcHHHhhcc-eee
Confidence 4 348999999999976 678899999987 3566666655432 2378999998 789
Q ss_pred eCCCCCHHHHHHHHHHHH
Q 013316 339 HFNDFNSEELAKILHIKM 356 (445)
Q Consensus 339 ~~~~~~~~~~~~il~~~l 356 (445)
.|++|+.+++.+++....
T Consensus 163 ~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 163 YLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp ECCCCCHHHHHHHHHHHC
T ss_pred eCCCCCHHHHHHHHHHhc
Confidence 999999999999887653
No 197
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.49 E-value=3.5e-14 Score=141.11 Aligned_cols=151 Identities=17% Similarity=0.196 Sum_probs=96.0
Q ss_pred hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc-
Q 013316 170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD- 248 (445)
Q Consensus 170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~- 248 (445)
.++|++.+++.+...+. ...++||+||||||||++|+++|..+.. ..+|..+.+.-
T Consensus 23 ~ivGq~~~i~~l~~al~------------------~~~~VLL~GpPGtGKT~LAraLa~~l~~-----~~~f~~~~~~~~ 79 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL------------------SGESVFLLGPPGIAKSLIARRLKFAFQN-----ARAFEYLMTRFS 79 (500)
T ss_dssp TCSSCHHHHHHHHHHHH------------------HTCEEEEECCSSSSHHHHHHHGGGGBSS-----CCEEEEECCTTC
T ss_pred hhHHHHHHHHHHHHHHh------------------cCCeeEeecCchHHHHHHHHHHHHHHhh-----hhHHHHHHHhcC
Confidence 38999998877665322 2359999999999999999999987643 22444444431
Q ss_pred ccccccCC-chhH--HHHHHHHc------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc-----------
Q 013316 249 LVGEFVGH-TGPK--TRRRIKEA------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK----------- 308 (445)
Q Consensus 249 l~~~~~g~-~~~~--~~~~~~~a------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~----------- 308 (445)
-.+.++|. .... -...|..+ .++|||||||+.+.+ +.++.|+..|+++.
T Consensus 80 t~~dL~G~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~-----------~~q~~LL~~lee~~v~i~G~~~~~~ 148 (500)
T 3nbx_X 80 TPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGP-----------AILNTLLTAINERQFRNGAHVEKIP 148 (500)
T ss_dssp CHHHHHCCBC----------CBCCTTSGGGCSEEEEESGGGCCH-----------HHHHHHHHHHHSSEEECSSSEEECC
T ss_pred CHHHhcCcccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhcH-----------HHHHHHHHHHHHHhccCCCCcCCcc
Confidence 11233332 1111 12334322 245899999987765 78889999997532
Q ss_pred -EEEEEecCchhHHHHHhhCcccccccccceeCCCCCH-HHHHHHHHHHH
Q 013316 309 -VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKILHIKM 356 (445)
Q Consensus 309 -~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~-~~~~~il~~~l 356 (445)
.++|+||++.+.. ....+++++||...+.+|.|+. +++.+|+....
T Consensus 149 ~~~iI~ATN~lpe~--~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 149 MRLLVAASNELPEA--DSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CCEEEEEESSCCCT--TCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred hhhhhhccccCCCc--cccHHHHHHHHHHHHHHHHhhhhhhHHHHHhccc
Confidence 2446666532211 0113588999989999999996 77888887644
No 198
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=3.3e-13 Score=126.29 Aligned_cols=143 Identities=11% Similarity=0.044 Sum_probs=99.9
Q ss_pred cchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc
Q 013316 173 GLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE 252 (445)
Q Consensus 173 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (445)
|++++.+.|...++ .+..+++||+||||||||++|+++++.+..... ....+..+++++-
T Consensus 1 g~~~~~~~L~~~i~----------------~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~-~~~d~~~l~~~~~--- 60 (305)
T 2gno_A 1 GAKDQLETLKRIIE----------------KSEGISILINGEDLSYPREVSLELPEYVEKFPP-KASDVLEIDPEGE--- 60 (305)
T ss_dssp ---CHHHHHHHHHH----------------TCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCC-CTTTEEEECCSSS---
T ss_pred ChHHHHHHHHHHHH----------------CCCCcEEEEECCCCCCHHHHHHHHHHhCchhhc-cCCCEEEEcCCcC---
Confidence 56667777766543 123568999999999999999999987532111 2336777765421
Q ss_pred ccCCchhHHHHHHHHc-------cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC--CcEEEEEecCchhHHHH
Q 013316 253 FVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRV 323 (445)
Q Consensus 253 ~~g~~~~~~~~~~~~a-------~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~i~a~~~~~~~~~ 323 (445)
. ..-..++.+++.+ ...|+||||+|.+.. .+++.|++.|++ ...++|++++...
T Consensus 61 ~--~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~-----------~a~naLLk~LEep~~~t~fIl~t~~~~---- 123 (305)
T 2gno_A 61 N--IGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ-----------QAANAFLKALEEPPEYAVIVLNTRRWH---- 123 (305)
T ss_dssp C--BCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-----------HHHHHTHHHHHSCCTTEEEEEEESCGG----
T ss_pred C--CCHHHHHHHHHHHhhccccCCceEEEeccHHHhCH-----------HHHHHHHHHHhCCCCCeEEEEEECChH----
Confidence 0 1233466666655 247999999999976 678999999987 4566666654432
Q ss_pred HhhCcccccccccceeCCCCCHHHHHHHHHHHH
Q 013316 324 IASNEGFCRRVTKFFHFNDFNSEELAKILHIKM 356 (445)
Q Consensus 324 ~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l 356 (445)
...|++++| .++|++|+.+++.+.+...+
T Consensus 124 -kl~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 124 -YLLPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp -GSCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred -hChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 237899999 99999999999999998765
No 199
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.42 E-value=2e-12 Score=126.97 Aligned_cols=213 Identities=14% Similarity=0.110 Sum_probs=124.3
Q ss_pred hhhcchHHHHHHHHHH-HHhhhHHHHHHcCCCCCC--CCCCeeEe--ecCCCCchhHHHHHHHHHHHHcC--CCCCCCeE
Q 013316 170 NIVGLHELKIQLRKWA-KGMLLDERRKALGLKVGA--RRPPHMAF--LGNPGTGKTMVARILGRLLYMVG--ILPTDRVT 242 (445)
Q Consensus 170 ~l~g~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~--~~~~~vll--~Gp~GtGKt~~A~~la~~~~~~~--~~~~~~~~ 242 (445)
.++|.+...+.|.+++ .... .. ..+..+++ +||||||||++|+.+++.+.... .-....++
T Consensus 23 ~l~gR~~el~~l~~~l~~~~~------------~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~ 90 (412)
T 1w5s_A 23 ELRVRRGEAEALARIYLNRLL------------SGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA 90 (412)
T ss_dssp SCSSSCHHHHHHHHHHHHHHH------------TSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCChHHHHHHHHHHHhHHHh------------cCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEE
Confidence 4899998888887765 4331 01 24568899 99999999999999999875420 00011466
Q ss_pred Eeecccc------cccc---c-------CCchhHH----HHHHHH-ccCcEEEEcCccccccCCCCCCchhHHHHHHHHH
Q 013316 243 EVQRTDL------VGEF---V-------GHTGPKT----RRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 301 (445)
Q Consensus 243 ~~~~~~l------~~~~---~-------g~~~~~~----~~~~~~-a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll 301 (445)
.+++... ...+ + |.+...+ ...+.. ..+.+|+|||+|.+...+. ...+.+..++
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-----~~~~~l~~l~ 165 (412)
T 1w5s_A 91 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-----IAAEDLYTLL 165 (412)
T ss_dssp EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-----SCHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-----cchHHHHHHH
Confidence 6775331 1110 1 1112222 223332 2357999999999975311 0114444444
Q ss_pred hhcc-----C--CcEEEEEecCchhHH-HHHhhCcccccccccceeCCCCCHHHHHHHHHHHHhcccccccccccccCCc
Q 013316 302 SVMD-----G--GKVVVIFAGYSEPMK-RVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSS 373 (445)
Q Consensus 302 ~~~~-----~--~~~~~i~a~~~~~~~-~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~ 373 (445)
..++ + .++.+|++++..... .+....+.+.+||...+.|++++.++..+++...+.... . ...
T Consensus 166 ~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~--------~-~~~ 236 (412)
T 1w5s_A 166 RVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL--------R-DTV 236 (412)
T ss_dssp THHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB--------C-TTS
T ss_pred HHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC--------C-CCC
Confidence 4443 3 577788776544332 221111667777766699999999999999998776421 0 123
Q ss_pred ccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHH
Q 013316 374 CSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 409 (445)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~ 409 (445)
++++.+. .+...+.......||.+.+..++..+..
T Consensus 237 ~~~~~~~-~i~~~~~~~~~~~G~p~~~~~l~~~a~~ 271 (412)
T 1w5s_A 237 WEPRHLE-LISDVYGEDKGGDGSARRAIVALKMACE 271 (412)
T ss_dssp CCHHHHH-HHHHHHCGGGTSCCCHHHHHHHHHHHHH
T ss_pred CChHHHH-HHHHHHHHhccCCCcHHHHHHHHHHHHH
Confidence 5555655 3434442110011888888888877643
No 200
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.27 E-value=1.4e-11 Score=119.07 Aligned_cols=234 Identities=17% Similarity=0.108 Sum_probs=128.2
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHH-HHHHHHcCCCCCCCeE
Q 013316 164 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARIL-GRLLYMVGILPTDRVT 242 (445)
Q Consensus 164 ~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~l-a~~~~~~~~~~~~~~~ 242 (445)
+...+..|+|++.+|..|.-.+-. -.-......|+||.|+||| ||++|+++ ++.+.+ ..|+
T Consensus 208 l~~sIapI~G~e~vK~aLll~L~G-----------G~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR------~~ft 269 (506)
T 3f8t_A 208 FARAIAPLPGAEEVGKMLALQLFS-----------CVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPR------GVYV 269 (506)
T ss_dssp HHHHHCCSTTCHHHHHHHHHHHTT-----------CCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSS------EEEE
T ss_pred HHHHhcccCCCHHHHHHHHHHHcC-----------CccccCCceeEEEECCCCh-HHHHHHHHHHHhCCC------eEEe
Confidence 444555599999887666532110 0000123448999999999 99999999 776532 0121
Q ss_pred Eeecc---cccccccCCch-hHHHHHHHHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-----------
Q 013316 243 EVQRT---DLVGEFVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----------- 307 (445)
Q Consensus 243 ~~~~~---~l~~~~~g~~~-~~~~~~~~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~----------- 307 (445)
....+ .+.+...+.++ ..-...+..|.+||+|||||+.+.+ ..+..|++.|+++
T Consensus 270 ~g~~ss~~gLt~s~r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~~-----------~~qsaLlEaMEe~~VtI~G~~lpa 338 (506)
T 3f8t_A 270 DLRRTELTDLTAVLKEDRGWALRAGAAVLADGGILAVDHLEGAPE-----------PHRWALMEAMDKGTVTVDGIALNA 338 (506)
T ss_dssp EGGGCCHHHHSEEEEESSSEEEEECHHHHTTTSEEEEECCTTCCH-----------HHHHHHHHHHHHSEEEETTEEEEC
T ss_pred cCCCCCccCceEEEEcCCCcccCCCeeEEcCCCeeehHhhhhCCH-----------HHHHHHHHHHhCCcEEECCEEcCC
Confidence 11111 11111111011 0012356678999999999977765 8889999999864
Q ss_pred cEEEEEecCchhHH------HHHhhCcccccccccce-eCCCCCHHHH---------HHHHHHHHhcccccccccccccC
Q 013316 308 KVVVIFAGYSEPMK------RVIASNEGFCRRVTKFF-HFNDFNSEEL---------AKILHIKMNNQTEDSLLYGFKLH 371 (445)
Q Consensus 308 ~~~~i~a~~~~~~~------~~~~~~~~l~~R~~~~i-~~~~~~~~~~---------~~il~~~l~~~~~~~~~~~~~~~ 371 (445)
++.+|+|+|+...- .-+...+++++|||..+ ....|+.++- .+.+..++..... ....
T Consensus 339 rf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~------~~~~ 412 (506)
T 3f8t_A 339 RCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIR------EHPA 412 (506)
T ss_dssp CCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHH------HCSC
T ss_pred CeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHh------cCCC
Confidence 45778887776511 01234678999998654 4444443221 1122222221100 0123
Q ss_pred CcccHHHHHHHHHHHHHH----h-------hhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHHHHHHHHH
Q 013316 372 SSCSMDAIAALIEKETTE----K-------QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 440 (445)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~----~-------~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 440 (445)
+.+++++...+...+..- + ...+...|.+..++.-|...+..+. ...|+.+|+.+|+.-+
T Consensus 413 p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~g---------R~~V~~eDV~~Ai~L~ 483 (506)
T 3f8t_A 413 PELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRL---------SDDVEPEDVDIAAELV 483 (506)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTT---------CSEECHHHHHHHHHHH
T ss_pred ceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcC---------cCCCCHHHHHHHHHHH
Confidence 556666555444332211 0 2234566888888877644433332 2379999999999754
Q ss_pred H
Q 013316 441 L 441 (445)
Q Consensus 441 ~ 441 (445)
.
T Consensus 484 ~ 484 (506)
T 3f8t_A 484 D 484 (506)
T ss_dssp H
T ss_pred H
Confidence 3
No 201
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.00 E-value=8.4e-10 Score=96.97 Aligned_cols=71 Identities=20% Similarity=0.117 Sum_probs=48.7
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCC----chhHHHHHHHHccCcEEEEcCcccc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH----TGPKTRRRIKEAEGGILFVDEAYRL 281 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~----~~~~~~~~~~~a~~~il~lDEid~l 281 (445)
+.+++|+||||||||++|++++..+...+ .+++.++++.+...+... ........+. ...+|||||++..
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~ 127 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRN----VSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE 127 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTT----CCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 37899999999999999999999987533 277778887765443211 1122222333 2359999999765
Q ss_pred c
Q 013316 282 I 282 (445)
Q Consensus 282 ~ 282 (445)
.
T Consensus 128 ~ 128 (202)
T 2w58_A 128 A 128 (202)
T ss_dssp -
T ss_pred c
Confidence 4
No 202
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.98 E-value=5.7e-10 Score=129.17 Aligned_cols=139 Identities=17% Similarity=0.155 Sum_probs=90.0
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc-----------------
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA----------------- 268 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a----------------- 268 (445)
..++||+||||||||++|+.+.... ....++.++++... +...+.+.++..
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~------~~~~~~~infsa~t------s~~~~~~~i~~~~~~~~~~~g~~~~P~~~ 1334 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNS------SLYDVVGINFSKDT------TTEHILSALHRHTNYVTTSKGLTLLPKSD 1334 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSC------SSCEEEEEECCTTC------CHHHHHHHHHHHBCCEEETTTEEEEEBSS
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcC------CCCceEEEEeecCC------CHHHHHHHHHHHhhhccccCCccccCCCC
Confidence 4689999999999999995554322 12256677776543 233344444321
Q ss_pred -cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhh---ccC--------CcEEEEEecCchhHHHHHhhCccccccccc
Q 013316 269 -EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG--------GKVVVIFAGYSEPMKRVIASNEGFCRRVTK 336 (445)
Q Consensus 269 -~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~---~~~--------~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~ 336 (445)
+.+||||||++.....+. +.....+.+.+++.. .+. .++.+|+|+++...---...+|+|.||| .
T Consensus 1335 gk~~VlFiDEinmp~~d~y--g~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~ 1411 (2695)
T 4akg_A 1335 IKNLVLFCDEINLPKLDKY--GSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-A 1411 (2695)
T ss_dssp SSCEEEEEETTTCSCCCSS--SCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-E
T ss_pred CceEEEEeccccccccccc--CchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-e
Confidence 126999999987554432 233344555555532 111 2478888887653000012389999999 8
Q ss_pred ceeCCCCCHHHHHHHHHHHHhcc
Q 013316 337 FFHFNDFNSEELAKILHIKMNNQ 359 (445)
Q Consensus 337 ~i~~~~~~~~~~~~il~~~l~~~ 359 (445)
++.++.|+.+++..|+..+++..
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 203
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.88 E-value=4.1e-08 Score=93.65 Aligned_cols=158 Identities=16% Similarity=0.117 Sum_probs=93.4
Q ss_pred hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316 170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 249 (445)
Q Consensus 170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l 249 (445)
.++|.+...+.|.+++.. ...++++||+|+|||++++.+++..+ ++.+++...
T Consensus 13 ~~~gR~~el~~L~~~l~~------------------~~~v~i~G~~G~GKT~Ll~~~~~~~~---------~~~~~~~~~ 65 (350)
T 2qen_A 13 DIFDREEESRKLEESLEN------------------YPLTLLLGIRRVGKSSLLRAFLNERP---------GILIDCREL 65 (350)
T ss_dssp GSCSCHHHHHHHHHHHHH------------------CSEEEEECCTTSSHHHHHHHHHHHSS---------EEEEEHHHH
T ss_pred hcCChHHHHHHHHHHHhc------------------CCeEEEECCCcCCHHHHHHHHHHHcC---------cEEEEeecc
Confidence 478888877777764321 15899999999999999999987631 344443321
Q ss_pred c------------c---ccc-----------------C-------CchhHHHHHHHH----ccCcEEEEcCccccccCCC
Q 013316 250 V------------G---EFV-----------------G-------HTGPKTRRRIKE----AEGGILFVDEAYRLIPMQK 286 (445)
Q Consensus 250 ~------------~---~~~-----------------g-------~~~~~~~~~~~~----a~~~il~lDEid~l~~~~~ 286 (445)
. . ..+ | ..-..+...+.. ..+.+|+|||++.+.....
T Consensus 66 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~ 145 (350)
T 2qen_A 66 YAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS 145 (350)
T ss_dssp HHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT
T ss_pred cccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc
Confidence 1 0 000 0 011112222221 1378999999999875110
Q ss_pred CCCchhHHHHHHHHHhhccC-CcEEEEEecCchhH-HHH---HhhCcccccccccceeCCCCCHHHHHHHHHHHHhc
Q 013316 287 ADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPM-KRV---IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNN 358 (445)
Q Consensus 287 ~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~-~~~---~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 358 (445)
....+.+..|...++. ..+.+|++++.... ..+ .....++..|+...+.+++++.+|..+++...+..
T Consensus 146 ----~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~ 218 (350)
T 2qen_A 146 ----RGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFRE 218 (350)
T ss_dssp ----TTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred ----cchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHH
Confidence 0011333333333332 46777777665442 322 12234566676678999999999999999876654
No 204
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.88 E-value=1.6e-09 Score=93.42 Aligned_cols=71 Identities=24% Similarity=0.325 Sum_probs=45.5
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHH-HcCCCCCCCeEEeecccccccccCC----chhHHHHHHHHccCcEEEEcCcc
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLY-MVGILPTDRVTEVQRTDLVGEFVGH----TGPKTRRRIKEAEGGILFVDEAY 279 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~-~~~~~~~~~~~~~~~~~l~~~~~g~----~~~~~~~~~~~a~~~il~lDEid 279 (445)
...+++|+||||||||+++++++..+. ..+. .++.++..++...+... ........+ ....+|+|||++
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~ 110 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI----RGYFFDTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLG 110 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC----CCCEEEHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC----eEEEEEHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCC
Confidence 356899999999999999999999986 3232 44556666554332210 111111112 256899999997
Q ss_pred cc
Q 013316 280 RL 281 (445)
Q Consensus 280 ~l 281 (445)
..
T Consensus 111 ~~ 112 (180)
T 3ec2_A 111 SE 112 (180)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 205
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.86 E-value=3.9e-09 Score=87.78 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=45.7
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHccCcEEEEcCcccccc
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIP 283 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a~~~il~lDEid~l~~ 283 (445)
....++|+||+|+|||+++++++..+...+ ..++.++..++... . + ..+..+|+|||++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g----~~~~~~~~~~~~~~----------~-~-~~~~~lLilDE~~~~~~ 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG----KNAAYIDAASMPLT----------D-A-AFEAEYLAVDQVEKLGN 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTT----CCEEEEETTTSCCC----------G-G-GGGCSEEEEESTTCCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcC----CcEEEEcHHHhhHH----------H-H-HhCCCEEEEeCccccCh
Confidence 345799999999999999999999886422 14666776665432 1 1 12468999999988654
No 206
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.86 E-value=7.7e-09 Score=115.01 Aligned_cols=149 Identities=13% Similarity=0.151 Sum_probs=90.8
Q ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHhhhHHHH--------HHcCCC---------------CC-CCCCCe--eEeecCC
Q 013316 162 DELENELSNIVGLHELKIQLRKWAKGMLLDERR--------KALGLK---------------VG-ARRPPH--MAFLGNP 215 (445)
Q Consensus 162 ~~~~~~~~~l~g~~~~~~~l~~~~~~~~~~~~~--------~~~~~~---------------~~-~~~~~~--vll~Gp~ 215 (445)
.+....|+++.|.+++|+.+.+.+.... .... ++.+.. ++ ...|.+ +++||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~ 1091 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQI-EKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPE 1091 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHH-HHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECST
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHH-hhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCC
Confidence 3455789999999999998877544322 1110 111111 11 224444 9999999
Q ss_pred CCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc------------ccccCC----chhHHHHHHH---HccCcEEEEc
Q 013316 216 GTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV------------GEFVGH----TGPKTRRRIK---EAEGGILFVD 276 (445)
Q Consensus 216 GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~------------~~~~g~----~~~~~~~~~~---~a~~~il~lD 276 (445)
|||||++|++++.+....+ ++.+.++..... ++|+++ +++.++.++. +...+++|+|
T Consensus 1092 g~GKT~la~~~~~~~~~~g----~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d 1167 (1706)
T 3cmw_A 1092 SSGKTTLTLQVIAAAQREG----KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVD 1167 (1706)
T ss_dssp TSSHHHHHHHHHHHHHHTT----CCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEES
T ss_pred CCChHHHHHHHHHHhhhcC----CceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeC
Confidence 9999999999999887642 255555555422 556676 6777777776 4456999999
Q ss_pred CccccccCCC---C-C--CchhHHHHHHHHHhhccC----CcEEEEEec
Q 013316 277 EAYRLIPMQK---A-D--DKDYGIEALEEIMSVMDG----GKVVVIFAG 315 (445)
Q Consensus 277 Eid~l~~~~~---~-~--~~~~~~~~~~~ll~~~~~----~~~~~i~a~ 315 (445)
|+++|.+.+. . + +.....+.+++++..|+. .++++|+++
T Consensus 1168 ~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~~~n 1216 (1706)
T 3cmw_A 1168 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1216 (1706)
T ss_dssp CGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred chHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEEEec
Confidence 9999999742 1 1 123445667888888876 788887554
No 207
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.78 E-value=1.3e-07 Score=90.26 Aligned_cols=138 Identities=17% Similarity=0.196 Sum_probs=82.2
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc--------------------------------cccc
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV--------------------------------GEFV 254 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~--------------------------------~~~~ 254 (445)
..++++||+|+|||++++.+++.... .++.+++.... ..+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~ 103 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNL-------PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQ 103 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTC-------CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTST
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCC-------CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccc
Confidence 48999999999999999999987643 34445543210 0000
Q ss_pred -----------------CCchhHHHHHHHHc--cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEec
Q 013316 255 -----------------GHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG 315 (445)
Q Consensus 255 -----------------g~~~~~~~~~~~~a--~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~ 315 (445)
...-..+...+.+. .+.+|+|||++.+....+ .+. ...+..+.... ..+.+|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~---~~~-~~~l~~~~~~~--~~~~~i~~g 177 (357)
T 2fna_A 104 GIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRG---VNL-LPALAYAYDNL--KRIKFIMSG 177 (357)
T ss_dssp TEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTT---CCC-HHHHHHHHHHC--TTEEEEEEE
T ss_pred eEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCc---hhH-HHHHHHHHHcC--CCeEEEEEc
Confidence 00111222333332 367999999999875211 111 12233333221 356677776
Q ss_pred CchhH-HHH---HhhCcccccccccceeCCCCCHHHHHHHHHHHHh
Q 013316 316 YSEPM-KRV---IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMN 357 (445)
Q Consensus 316 ~~~~~-~~~---~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 357 (445)
+.... ..+ .....++..|+...+.+++++.+|..+++...+.
T Consensus 178 ~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 178 SEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp SSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHH
Confidence 65442 222 1223446667667899999999999999987664
No 208
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.76 E-value=3.8e-08 Score=93.88 Aligned_cols=181 Identities=10% Similarity=-0.016 Sum_probs=114.1
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc-------cCcEEEEcC
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDE 277 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~il~lDE 277 (445)
.++..||+||+|+||++.++.+++.+...+. .++..+. +-| ...++++++.+ ...|++|||
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~---~~~~~~~-------~~~--~~~~~~l~~~~~~~plf~~~kvvii~~ 84 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGF---EEHHTFS-------IDP--NTDWNAIFSLCQAMSLFASRQTLLLLL 84 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTC---CEEEEEE-------CCT--TCCHHHHHHHHHHHHHCCSCEEEEEEC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCC---CeeEEEE-------ecC--CCCHHHHHHHhcCcCCccCCeEEEEEC
Confidence 4568999999999999999999998764321 0111111 111 12334444333 457999999
Q ss_pred ccc-cccCCCCCCchhHHHHHHHHHhhccC---CcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHHHHH
Q 013316 278 AYR-LIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILH 353 (445)
Q Consensus 278 id~-l~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~ 353 (445)
+|. +.. ..++.|+..+++ +.++++.+++.+..+.....-+++.+|+ .++.|.+++.+++...++
T Consensus 85 ~~~kl~~-----------~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 85 PENGPNA-----------AINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp CSSCCCT-----------THHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHH
T ss_pred CCCCCCh-----------HHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHH
Confidence 988 754 456778877775 4455555554332110001136678887 889999999999999999
Q ss_pred HHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChhhhhhccHHHH
Q 013316 354 IKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDL 433 (445)
Q Consensus 354 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 433 (445)
..+++.. ..++++++..+. ..+ .+|.+.+.+.+++..-.. . + ..||.+||
T Consensus 153 ~~~~~~g-----------~~i~~~a~~~l~-~~~------~gdl~~~~~elekl~l~~---------~-~--~~It~e~V 202 (343)
T 1jr3_D 153 ARAKQLN-----------LELDDAANQVLC-YCY------EGNLLALAQALERLSLLW---------P-D--GKLTLPRV 202 (343)
T ss_dssp HHHHHTT-----------CEECHHHHHHHH-HSS------TTCHHHHHHHHHHHHHHC---------T-T--CEECHHHH
T ss_pred HHHHHcC-----------CCCCHHHHHHHH-HHh------chHHHHHHHHHHHHHHhc---------C-C--CCCCHHHH
Confidence 8887642 245667776444 444 567777777787762211 0 1 15788887
Q ss_pred HHHHHH
Q 013316 434 EAGLKL 439 (445)
Q Consensus 434 ~~a~~~ 439 (445)
.+.+..
T Consensus 203 ~~~~~~ 208 (343)
T 1jr3_D 203 EQAVND 208 (343)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 766553
No 209
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.72 E-value=1.7e-08 Score=94.58 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=48.3
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHH-HcCCCCCCCeEEeecccccccccCC-chhHHHHHHHH-ccCcEEEEcCccccc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLY-MVGILPTDRVTEVQRTDLVGEFVGH-TGPKTRRRIKE-AEGGILFVDEAYRLI 282 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~-~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~-a~~~il~lDEid~l~ 282 (445)
..+++|+||||||||++|++++..+. ..+. ++..++++++...+.+. ........+.. ....+|||||++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~----~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGV----STTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQ 227 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCC----CEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC--
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCC----cEEEEEHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCC
Confidence 57999999999999999999999988 6443 67778877766544332 11111111211 234699999996654
No 210
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.63 E-value=5.9e-08 Score=84.50 Aligned_cols=128 Identities=18% Similarity=0.146 Sum_probs=70.5
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCC-CCC-CCeEEeeccccccccc----------CC-----chhHHHHHH--
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI-LPT-DRVTEVQRTDLVGEFV----------GH-----TGPKTRRRI-- 265 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~-~~~-~~~~~~~~~~l~~~~~----------g~-----~~~~~~~~~-- 265 (445)
.+...+++|+||||||++|..........+. -.. .+++..+..++...++ .. ........+
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 83 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK 83 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc
Confidence 3457889999999999999776544321000 001 2444444444432221 11 112333332
Q ss_pred HHccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC---CcEEEEEecCchhHHHHHhhCcccccccccceeCCC
Q 013316 266 KEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND 342 (445)
Q Consensus 266 ~~a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~ 342 (445)
...+++||+|||++.+.+.+.... +. . .++..++. ..+.+|+.|.+.. ..+.+++.|++..+++++
T Consensus 84 ~~~~~~vliIDEAq~l~~~~~~~~-e~----~-rll~~l~~~r~~~~~iil~tq~~~-----~l~~~lr~ri~~~~~l~~ 152 (199)
T 2r2a_A 84 PENIGSIVIVDEAQDVWPARSAGS-KI----P-ENVQWLNTHRHQGIDIFVLTQGPK-----LLDQNLRTLVRKHYHIAS 152 (199)
T ss_dssp GGGTTCEEEETTGGGTSBCCCTTC-CC----C-HHHHGGGGTTTTTCEEEEEESCGG-----GBCHHHHTTEEEEEEEEE
T ss_pred cccCceEEEEEChhhhccCccccc-hh----H-HHHHHHHhcCcCCeEEEEECCCHH-----HHhHHHHHHhheEEEEcC
Confidence 223489999999999976553211 11 1 24444432 3345555555421 237779999988888877
Q ss_pred C
Q 013316 343 F 343 (445)
Q Consensus 343 ~ 343 (445)
+
T Consensus 153 ~ 153 (199)
T 2r2a_A 153 N 153 (199)
T ss_dssp C
T ss_pred c
Confidence 5
No 211
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.55 E-value=6.1e-08 Score=83.47 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=23.5
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
..+++|+||||||||++|.++++.+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999999874
No 212
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.48 E-value=8.9e-08 Score=86.43 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.6
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
..+++|+||||||||++|++||+.+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh
Confidence 4579999999999999999999864
No 213
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.44 E-value=9.8e-07 Score=103.29 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=84.1
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHH---------------cc
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE---------------AE 269 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~---------------a~ 269 (445)
...++||+||||||||++++.+...+ ...+++.++++.-. +...+.+.++. +.
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l------~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~ 1370 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAF------PDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPT 1370 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGC------TTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEES
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhC------CCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCC
Confidence 34689999999999997765432211 11256677776532 23333344431 10
Q ss_pred --C--cEEEEcCccccccCCCCCCchhHHHHHHHHHhh---ccC--------CcEEEEEecCchhHHHHHhhCccccccc
Q 013316 270 --G--GILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG--------GKVVVIFAGYSEPMKRVIASNEGFCRRV 334 (445)
Q Consensus 270 --~--~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~---~~~--------~~~~~i~a~~~~~~~~~~~~~~~l~~R~ 334 (445)
| .|+||||++.-.+... +.....+.+.+++.. .+. .++.+|+|.++....--...+|+|.|||
T Consensus 1371 ~~Gk~~VlFiDDiNmp~~D~y--GtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F 1448 (3245)
T 3vkg_A 1371 QLGKWLVVFCDEINLPSTDKY--GTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA 1448 (3245)
T ss_dssp STTCEEEEEETTTTCCCCCTT--SCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC
T ss_pred cCCceEEEEecccCCCCcccc--ccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc
Confidence 2 5999999986544322 222333455554432 111 2456777766542111112378899999
Q ss_pred ccceeCCCCCHHHHHHHHHHHHhcc
Q 013316 335 TKFFHFNDFNSEELAKILHIKMNNQ 359 (445)
Q Consensus 335 ~~~i~~~~~~~~~~~~il~~~l~~~ 359 (445)
..+.++.|+.+++..|+..++...
T Consensus 1449 -~vi~i~~ps~esL~~If~til~~~ 1472 (3245)
T 3vkg_A 1449 -PILLVDFPSTSSLTQIYGTFNRAL 1472 (3245)
T ss_dssp -CEEECCCCCHHHHHHHHHHHHHHH
T ss_pred -eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 779999999999999998876643
No 214
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.43 E-value=4.6e-07 Score=83.78 Aligned_cols=104 Identities=16% Similarity=0.190 Sum_probs=56.7
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHH---HHHHHccCcEEEEcCcccccc
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTR---RRIKEAEGGILFVDEAYRLIP 283 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~---~~~~~a~~~il~lDEid~l~~ 283 (445)
..++|+||||||||++|..++...+. ...|+....++..+.+....+..+. +.+.+.. +||||+++.+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~-----~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGG-----KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHT-----TSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCC-----CEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 35789999999999999999987322 1134444212222222222222222 2333333 999999999976
Q ss_pred CCCCCC-----chhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316 284 MQKADD-----KDYGIEALEEIMSVMDGGKVVVIFAGYS 317 (445)
Q Consensus 284 ~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~i~a~~~ 317 (445)
....++ .....+.+..|...+....+.+|+++++
T Consensus 197 ~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 197 AAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred ccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 443211 1223455555655555555667776653
No 215
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.41 E-value=2.6e-07 Score=107.35 Aligned_cols=121 Identities=19% Similarity=0.156 Sum_probs=83.4
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc--cCcEEEEcCccccccC
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPM 284 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a--~~~il~lDEid~l~~~ 284 (445)
.+.++.||+|||||++++.+|+.+++ +++.++|++-. ....+.++|..+ .|+.+++|||+++.+
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~-------~~v~~nc~e~l------d~~~lg~~~~g~~~~Gaw~~~DE~nr~~~- 711 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGR-------VVVVFNCDDSF------DYQVLSRLLVGITQIGAWGCFDEFNRLDE- 711 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTC-------CCEEEETTSSC------CHHHHHHHHHHHHHHTCEEEEETTTSSCH-
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCC-------cEEEEECCCCC------ChhHhhHHHHHHHhcCCEeeehhhhhcCh-
Confidence 47889999999999999999999988 89999998643 334455666544 479999999988876
Q ss_pred CCCCCchhHHHHHHHH-------HhhccC---------------CcEEEEEecCchhHHHHHhhCcccccccccceeCCC
Q 013316 285 QKADDKDYGIEALEEI-------MSVMDG---------------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND 342 (445)
Q Consensus 285 ~~~~~~~~~~~~~~~l-------l~~~~~---------------~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~ 342 (445)
++++.+ ...+.+ ....++++.++. +..-....++|++|| +.+.+..
T Consensus 712 ----------evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPg-y~g~~eLP~~Lk~~F-r~v~m~~ 779 (2695)
T 4akg_A 712 ----------KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPG-YNGRSELPENLKKSF-REFSMKS 779 (2695)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCC-SSSSCCCCHHHHTTE-EEEECCC
T ss_pred ----------HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCC-ccCcccccHHHHhhe-EEEEeeC
Confidence 333333 222211 112344444432 221112246788899 8899999
Q ss_pred CCHHHHHHHHH
Q 013316 343 FNSEELAKILH 353 (445)
Q Consensus 343 ~~~~~~~~il~ 353 (445)
|+.+.+.+|+-
T Consensus 780 Pd~~~i~ei~l 790 (2695)
T 4akg_A 780 PQSGTIAEMIL 790 (2695)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999988864
No 216
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.33 E-value=3.2e-06 Score=72.18 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=22.2
Q ss_pred eeEeecCCCCchhHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
.+.|.||+|+||||+++.|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999885
No 217
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.12 E-value=5.6e-06 Score=93.49 Aligned_cols=109 Identities=12% Similarity=0.158 Sum_probs=65.7
Q ss_pred CCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc----ccccC------------Cchh---HHHH
Q 013316 203 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVG------------HTGP---KTRR 263 (445)
Q Consensus 203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~----~~~~g------------~~~~---~~~~ 263 (445)
..+..+++|+||||||||++|.+++......+. .+..++..... .+..| ..+. .++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~----~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~ 1499 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK----TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA 1499 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC----CEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC----cEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHH
Confidence 346778999999999999999999998776432 45555544321 12223 1122 2233
Q ss_pred HHHHccCcEEEEcCccccccCCC----CCCchh--HHHH----HHHHHhhccCCcEEEEEec
Q 013316 264 RIKEAEGGILFVDEAYRLIPMQK----ADDKDY--GIEA----LEEIMSVMDGGKVVVIFAG 315 (445)
Q Consensus 264 ~~~~a~~~il~lDEid~l~~~~~----~~~~~~--~~~~----~~~ll~~~~~~~~~~i~a~ 315 (445)
+.++....+|||||++.+.+.+. .++..+ ..+. +.+|........+++|+++
T Consensus 1500 lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1500 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 44456779999999999987431 111122 2233 4444444455667776664
No 218
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.08 E-value=3e-06 Score=72.82 Aligned_cols=25 Identities=16% Similarity=0.028 Sum_probs=19.7
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
.-.+++||+|+|||+++..++..+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3577899999999999966665553
No 219
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.00 E-value=1.1e-05 Score=94.67 Aligned_cols=121 Identities=17% Similarity=0.092 Sum_probs=81.6
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHHc--cCcEEEEcCccccccC
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPM 284 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~a--~~~il~lDEid~l~~~ 284 (445)
.+..+.||+|||||.+++.+|+.+++ +++.++|++-. ....+.++|.-+ .|+..++|||+++..
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr-------~~~vfnC~~~~------d~~~~g~i~~G~~~~GaW~cfDEfNrl~~- 670 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGR-------FVLVFCCDEGF------DLQAMSRIFVGLCQCGAWGCFDEFNRLEE- 670 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTC-------CEEEEECSSCC------CHHHHHHHHHHHHHHTCEEEEETTTSSCH-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCC-------eEEEEeCCCCC------CHHHHHHHHhhHhhcCcEEEehhhhcCCH-
Confidence 35678999999999999999999998 89999998643 223334444332 578999999988865
Q ss_pred CCCCCchhHHHHHHHHHhhcc-----------------C------CcEEEEEecCchhHHHHHhhCcccccccccceeCC
Q 013316 285 QKADDKDYGIEALEEIMSVMD-----------------G------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFN 341 (445)
Q Consensus 285 ~~~~~~~~~~~~~~~ll~~~~-----------------~------~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~ 341 (445)
++++.+.+.+. + ....++++.++ .+.--....+.|+.|| +.+.++
T Consensus 671 ----------~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNp-gY~gr~eLP~nLk~lF-r~v~m~ 738 (3245)
T 3vkg_A 671 ----------RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP-GYAGRSNLPDNLKKLF-RSMAMI 738 (3245)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCC-CGGGCCCSCHHHHTTE-EEEECC
T ss_pred ----------HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCC-CccCcccChHHHHhhc-EEEEEe
Confidence 33333332221 1 12344444443 2321123356788899 889999
Q ss_pred CCCHHHHHHHHH
Q 013316 342 DFNSEELAKILH 353 (445)
Q Consensus 342 ~~~~~~~~~il~ 353 (445)
.||.+.+.+|+-
T Consensus 739 ~Pd~~~i~ei~L 750 (3245)
T 3vkg_A 739 KPDREMIAQVML 750 (3245)
T ss_dssp SCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999999999863
No 220
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.86 E-value=3.4e-05 Score=78.22 Aligned_cols=93 Identities=24% Similarity=0.368 Sum_probs=57.3
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc----cccccCCchhHHHHHHHH------------cc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL----VGEFVGHTGPKTRRRIKE------------AE 269 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l----~~~~~g~~~~~~~~~~~~------------a~ 269 (445)
...+++.||||||||++++.+...+...+. .+..+.++.- ..+..|.....+.+.+.. ..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~----~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~ 279 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGL----EVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAP 279 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTC----CEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCC----eEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhccccc
Confidence 468999999999999999999998876442 4544433321 111122222223333311 13
Q ss_pred CcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCC-cEEEEE
Q 013316 270 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIF 313 (445)
Q Consensus 270 ~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~i~ 313 (445)
..+|+|||+..+.. ..+..|+..+..+ ++++++
T Consensus 280 ~dvlIIDEasml~~-----------~~~~~Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 280 YDLLIVDEVSMMGD-----------ALMLSLLAAVPPGARVLLVG 313 (574)
T ss_dssp CSEEEECCGGGCCH-----------HHHHHHHTTSCTTCEEEEEE
T ss_pred CCEEEEcCccCCCH-----------HHHHHHHHhCcCCCEEEEEe
Confidence 47999999976654 6677788877654 444444
No 221
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.85 E-value=8.6e-05 Score=73.45 Aligned_cols=93 Identities=18% Similarity=0.243 Sum_probs=56.6
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc----cccccCCchhHHHHHHHH---------------
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL----VGEFVGHTGPKTRRRIKE--------------- 267 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l----~~~~~g~~~~~~~~~~~~--------------- 267 (445)
.++++.|+||||||++++.++..+...+. ..+..+..+.- +....|.....+.+.+..
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~---~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~ 122 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE---TGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKE 122 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC---CCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECS
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC---ceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccc
Confidence 48999999999999999999998876432 13444433321 111122222223333321
Q ss_pred ----ccCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEE
Q 013316 268 ----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIF 313 (445)
Q Consensus 268 ----a~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~ 313 (445)
....+|++||+..+.. ..+..|+..+.. .++++++
T Consensus 123 ~~~~~~~~~iiiDE~~~~~~-----------~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 123 VPDLAKCRVLICDEVSMYDR-----------KLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp CCCCSSCSEEEESCGGGCCH-----------HHHHHHHHHSCTTCEEEEEE
T ss_pred cccccCCCEEEEECchhCCH-----------HHHHHHHHhccCCCEEEEEC
Confidence 1347999999976654 566777777764 3444444
No 222
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.79 E-value=8.3e-05 Score=65.56 Aligned_cols=28 Identities=18% Similarity=-0.191 Sum_probs=22.6
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYMVG 234 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~ 234 (445)
.-++++||+|+||||++..++..+...+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g 40 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYAD 40 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 3567789999999999988888776543
No 223
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.70 E-value=0.0012 Score=64.07 Aligned_cols=30 Identities=30% Similarity=0.380 Sum_probs=25.5
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 234 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~ 234 (445)
++..++|.||+|+||||++..+|..+...+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G 125 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG 125 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 455688999999999999999999887643
No 224
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.69 E-value=4.5e-05 Score=70.98 Aligned_cols=98 Identities=17% Similarity=0.251 Sum_probs=51.9
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccCCchhHHHHHHHHccCcEEEEcCccccccCC
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ 285 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~-~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~~ 285 (445)
..+++.||+|+|||++|+.||+.++. .++..+.-.+... .+| +.+.......... -.|+|..+-...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~-------~iis~Ds~qvy~~~~ig-Takp~~~e~~gvp--h~lid~~~~~~~-- 73 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPC-------ELISVDSALIYRGMDIG-TAKPSRELLARYP--HRLIDIRDPAES-- 73 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCE-------EEEEECTTTTBTTCCTT-TTCCCHHHHHHSC--EETSSCBCTTSC--
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC-------cEEeccchhhhcCCCcc-cCCCCHHHHcCCC--EEEeeccCcccc--
Confidence 46889999999999999999998754 5555543322211 112 2222222222222 355665543321
Q ss_pred CCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316 286 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 317 (445)
Q Consensus 286 ~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~ 317 (445)
.+..++...+...+-.....+++++++.++.
T Consensus 74 -~~~~~F~~~a~~~i~~i~~~g~~~IlvGGt~ 104 (323)
T 3crm_A 74 -YSAAEFRADALAAMAKATARGRIPLLVGGTM 104 (323)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred -cCHHHHHHHHHHHHHHHHHcCCeEEEECCch
Confidence 1113343344444444555677666666553
No 225
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.67 E-value=5.9e-05 Score=54.60 Aligned_cols=75 Identities=21% Similarity=0.216 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCC
Q 013316 341 NDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCL 420 (445)
Q Consensus 341 ~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~ 420 (445)
|.|+.++|.+||+.++++. .+..+++.+.++..+.+++ |+++.+++..|......+
T Consensus 1 plPd~~~R~~Il~~~l~~~---------~~~~~~dl~~la~~t~G~S---------GADi~~l~~eA~~~a~~~------ 56 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKM---------NLTRGINLRKIAELMPGAS---------GAEVKGVCTEAGMYALRE------ 56 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTS---------EECTTCCHHHHHHTCTTCC---------HHHHHHHHHHHHHHHHHT------
T ss_pred CcCCHHHHHHHHHHHhcCC---------CCCCccCHHHHHHHcCCCC---------HHHHHHHHHHHHHHHHHh------
Confidence 6899999999999999875 4456777778776665555 777788887774333222
Q ss_pred ChhhhhhccHHHHHHHHHHHHh
Q 013316 421 DTDELRTITLEDLEAGLKLLLR 442 (445)
Q Consensus 421 ~~~~~~~i~~~d~~~a~~~~~~ 442 (445)
+...|+.+||.+|++++..
T Consensus 57 ---~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 57 ---RRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp ---TCSEECHHHHHHHHHHHHC
T ss_pred ---CCCCCCHHHHHHHHHHHHh
Confidence 2347999999999998764
No 226
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=97.66 E-value=3.4e-05 Score=56.95 Aligned_cols=77 Identities=22% Similarity=0.237 Sum_probs=57.2
Q ss_pred eCCCCCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccC
Q 013316 339 HFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFD 418 (445)
Q Consensus 339 ~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~ 418 (445)
.-.+||.++|.+||+.++++. .+.++++.+.++..+.+++ |+++.+++..|......+.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~---------~l~~dvdl~~LA~~T~G~S---------GADL~~l~~eAa~~alr~~--- 65 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKM---------NLTRGINLRKIAELMPGAS---------GAEVKGVCTEAGMYALRER--- 65 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTS---------EECTTCCCHHHHHTCSSCC---------HHHHHHHHHHHHHHHHHTT---
T ss_pred CCCCcCHHHHHHHHHHHHcCC---------CCCcccCHHHHHHHcCCCC---------HHHHHHHHHHHHHHHHHHc---
Confidence 457899999999999999875 4456777777776665555 7777888877733322211
Q ss_pred CCChhhhhhccHHHHHHHHHHHHh
Q 013316 419 CLDTDELRTITLEDLEAGLKLLLR 442 (445)
Q Consensus 419 ~~~~~~~~~i~~~d~~~a~~~~~~ 442 (445)
...|+.+||.+|++.+.|
T Consensus 66 ------~~~I~~~df~~Al~~v~p 83 (86)
T 2krk_A 66 ------RVHVTQEDFEMAVAKVMQ 83 (86)
T ss_dssp ------CSEECHHHHHHHHHHHHC
T ss_pred ------CCCCCHHHHHHHHHHHcc
Confidence 247999999999999876
No 227
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.62 E-value=0.002 Score=62.59 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=25.7
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 234 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~ 234 (445)
+|..+++.|++|+||||++..+|..+...+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G 128 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRG 128 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCC
Confidence 456788999999999999999999887643
No 228
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.57 E-value=3.1e-05 Score=65.85 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=29.6
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 249 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l 249 (445)
+..++|.|+||+||||+|+.+++.++. +++.++...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~-------~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPE-------PWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSS-------CEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC-------CeEEeccchH
Confidence 356899999999999999999998765 6776655444
No 229
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.54 E-value=0.00035 Score=61.93 Aligned_cols=27 Identities=30% Similarity=0.344 Sum_probs=22.8
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
....++|+||||+|||++++.++..+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345688999999999999999997664
No 230
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.38 E-value=8.3e-05 Score=63.64 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=24.4
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+..++|.||||+||||+|+.+++.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457999999999999999999998865
No 231
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.36 E-value=0.00063 Score=64.75 Aligned_cols=76 Identities=17% Similarity=0.206 Sum_probs=46.5
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc----ccCC-----------chhHHHHHHH---
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----FVGH-----------TGPKTRRRIK--- 266 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~----~~g~-----------~~~~~~~~~~--- 266 (445)
+...++|+||||+|||++|..++......+ .+++.++...-... -+|. +...+...++
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g----~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~ 148 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAG----GTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLV 148 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCC----CeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence 344688999999999999999988775432 24555554431111 1111 2222223332
Q ss_pred -HccCcEEEEcCccccccC
Q 013316 267 -EAEGGILFVDEAYRLIPM 284 (445)
Q Consensus 267 -~a~~~il~lDEid~l~~~ 284 (445)
.....+|+||.+..+.+.
T Consensus 149 ~~~~~~lVVIDsl~~l~~~ 167 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTPR 167 (366)
T ss_dssp TTTCCSEEEEECTTTCCCS
T ss_pred hcCCCCEEEEeChHHhccc
Confidence 234589999999999863
No 232
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.36 E-value=0.0001 Score=63.97 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=25.1
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+...++|.||||+||||+|+.|++.++.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 34568999999999999999999999865
No 233
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.34 E-value=0.00046 Score=61.67 Aligned_cols=23 Identities=30% Similarity=0.196 Sum_probs=20.0
Q ss_pred eeEeecCCCCchhHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
.+++.||+|+|||.+|..++...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 59999999999999998877654
No 234
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.32 E-value=0.00029 Score=64.76 Aligned_cols=98 Identities=21% Similarity=0.351 Sum_probs=51.4
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccCCchhHHHHHHHHccCcEEEEcCccccccC
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM 284 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~-~~g~~~~~~~~~~~~a~~~il~lDEid~l~~~ 284 (445)
+..+++.||+|+|||++|..+|+.++. .++..+...+... -+| +.+....-.....+ -|||..+ +.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~-------~iis~Ds~qvY~~~~ig-Takp~~~E~~~v~h--hlid~~~---~~ 76 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPV-------ELISVDSALIYKGMDIG-TAKPNAEELLAAPH--RLLDIRD---PS 76 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCE-------EEEECCTTTTBTTCCTT-TTCCCHHHHHHSCE--ETSSCBC---TT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCC-------cEEeccccccccccccc-CCCCCHHHHcCCCE--EEeccCC---cc
Confidence 446788999999999999999988643 4444333222111 122 22222222222222 3344332 11
Q ss_pred CCCCCchhHHHHHHHHHhhccCCcEEEEEecC
Q 013316 285 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGY 316 (445)
Q Consensus 285 ~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~ 316 (445)
...+.+++...+...+-.....+++.++..+|
T Consensus 77 e~~s~~~f~~~a~~~i~~i~~~g~~pilVGGT 108 (316)
T 3foz_A 77 QAYSAADFRRDALAEMADITAAGRIPLLVGGT 108 (316)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred ccccHHHHHHHHHHHHHHHHhCCCcEEEEcCc
Confidence 11112345555555555556678877766655
No 235
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.31 E-value=0.0012 Score=67.59 Aligned_cols=27 Identities=33% Similarity=0.329 Sum_probs=22.9
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
...+++.||||||||+++..+...+..
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 457999999999999999888877754
No 236
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.30 E-value=0.0016 Score=58.12 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=22.6
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+...++++||||+|||++|..++.....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456889999999999999888766543
No 237
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.27 E-value=0.00041 Score=59.57 Aligned_cols=27 Identities=33% Similarity=0.551 Sum_probs=23.3
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYMVG 234 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~~~ 234 (445)
.+.|.||+|+||||+.+.|+..+...+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 478999999999999999999886434
No 238
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.25 E-value=0.00022 Score=62.20 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.8
Q ss_pred eeEeecCCCCchhHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
.++|.||||+||+|.|+.|++.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999999874
No 239
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.21 E-value=0.00038 Score=65.99 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=45.5
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc----ccccCC-----------chhHHHHHH----
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVGH-----------TGPKTRRRI---- 265 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~----~~~~g~-----------~~~~~~~~~---- 265 (445)
+...++|+||||+|||++|..++......+ ..+..++..... ...+|. +......++
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g----~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAG----GIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC----CeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 344688999999999999999998776533 244444433211 111121 112222222
Q ss_pred HHccCcEEEEcCcccccc
Q 013316 266 KEAEGGILFVDEAYRLIP 283 (445)
Q Consensus 266 ~~a~~~il~lDEid~l~~ 283 (445)
.+....+|+||++..+.+
T Consensus 136 ~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTTCCSEEEEECGGGCCC
T ss_pred hcCCCCEEEEcChHhhcc
Confidence 233468999999999985
No 240
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.20 E-value=0.00038 Score=64.13 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.9
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
.-+++.||+|+|||++|..+++.++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc
Confidence 3578899999999999999998764
No 241
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.19 E-value=0.00021 Score=67.09 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=25.1
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
...+++|.||||+|||++++.|+..++.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3457999999999999999999999986
No 242
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.18 E-value=0.00023 Score=61.17 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=24.3
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+..++|.|+||+||||+|+.+++.++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3557889999999999999999998754
No 243
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.18 E-value=0.0034 Score=59.28 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=45.5
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccc----c---------cc--CCchhHHHH----HHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----E---------FV--GHTGPKTRR----RIK 266 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~----~---------~~--g~~~~~~~~----~~~ 266 (445)
...++|+||||+|||+++..++..+...+ +.++.++...... . ++ ..+...... +++
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~g----g~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMG----GVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC----CeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 34578999999999999999998876532 2455555443111 0 00 112222222 223
Q ss_pred HccCcEEEEcCcccccc
Q 013316 267 EAEGGILFVDEAYRLIP 283 (445)
Q Consensus 267 ~a~~~il~lDEid~l~~ 283 (445)
.....+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 34568999999988886
No 244
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.18 E-value=0.0002 Score=60.24 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=24.3
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+..+++|.|+||+||||+|+.|++.++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4568999999999999999999998875
No 245
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.17 E-value=0.0005 Score=65.24 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=46.7
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc----ccccCC-----------chhHHHHHH----
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVGH-----------TGPKTRRRI---- 265 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~----~~~~g~-----------~~~~~~~~~---- 265 (445)
+...++|+||||+|||++|..++......+. ++..++..... ..-+|. +...+..++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~----~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~ 137 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGK----TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 137 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCC----eEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence 3456889999999999999999987765332 45555543211 111111 122223332
Q ss_pred HHccCcEEEEcCcccccc
Q 013316 266 KEAEGGILFVDEAYRLIP 283 (445)
Q Consensus 266 ~~a~~~il~lDEid~l~~ 283 (445)
+.....+|+||.+..+.+
T Consensus 138 ~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 138 RSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHTCCSEEEEECGGGCCC
T ss_pred hccCCCEEEEcCHHHhcc
Confidence 334568999999999875
No 246
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.17 E-value=0.0014 Score=66.22 Aligned_cols=44 Identities=16% Similarity=0.033 Sum_probs=33.3
Q ss_pred hcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHH
Q 013316 172 VGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR 228 (445)
Q Consensus 172 ~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~ 228 (445)
+|.+..+.+|.+++... .......+.++|++|+|||++|+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~-------------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM-------------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH-------------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc-------------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 58888888888765321 012345688999999999999999996
No 247
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.17 E-value=0.00022 Score=59.97 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=22.8
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.|+|.||||+||||+|+.|++.++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~ 27 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKY 27 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999998764
No 248
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.16 E-value=0.0002 Score=61.10 Aligned_cols=26 Identities=35% Similarity=0.704 Sum_probs=23.4
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
..|+|.|+||+||||+|+.|++.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35899999999999999999998865
No 249
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.16 E-value=0.00087 Score=63.99 Aligned_cols=64 Identities=14% Similarity=0.027 Sum_probs=40.5
Q ss_pred CCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccccCCchhHHHHHHHH-ccCcEEEEcCcccc
Q 013316 203 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-AEGGILFVDEAYRL 281 (445)
Q Consensus 203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~-a~~~il~lDEid~l 281 (445)
......++|+||||+||||+++.++..+.. .++.+..+.- .....+.. .+..++|+||++.+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g-------~~~~~~~~~~----------~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGG-------KALNVNLPLD----------RLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCC-------EEECCSSCTT----------THHHHHGGGTTCSCEEETTCCCS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCC-------cEEEEeccch----------hHHHHHHHhcchhHHHHHHHHHH
Confidence 445668999999999999999999986532 3332222110 00001111 23467899999998
Q ss_pred cc
Q 013316 282 IP 283 (445)
Q Consensus 282 ~~ 283 (445)
..
T Consensus 229 ~~ 230 (377)
T 1svm_A 229 GG 230 (377)
T ss_dssp TT
T ss_pred HH
Confidence 76
No 250
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.15 E-value=0.00019 Score=61.49 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=22.7
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
.+..++|+|+||+||||+++.+++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999987
No 251
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.14 E-value=0.00023 Score=60.58 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=24.5
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+..++|.|+||+||||+++.+++.++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~ 37 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGL 37 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 3557999999999999999999998754
No 252
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.14 E-value=0.00028 Score=61.21 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=25.7
Q ss_pred CCCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 203 ARRPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
...+..|+|.|+||+||||+|+.|++.++.
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~ 46 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGI 46 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345567999999999999999999998764
No 253
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.13 E-value=0.0027 Score=64.78 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=34.5
Q ss_pred hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHH
Q 013316 170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
.++|.+....+|.+.+... ......++++||+|+|||++|+.+++.
T Consensus 125 ~~vGR~~~l~~L~~~L~~~--------------~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKL--------------KGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTS--------------TTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred eecccHHHHHHHHHHHhcc--------------cCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 3899998888887754211 123456889999999999999998754
No 254
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.12 E-value=0.0019 Score=58.50 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=24.0
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+...++|.||+|+||||+.+.++..+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 3446889999999999999999998754
No 255
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.11 E-value=0.00026 Score=59.89 Aligned_cols=25 Identities=36% Similarity=0.651 Sum_probs=23.0
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.++|.||||+||||+|+.|++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 6899999999999999999998764
No 256
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.08 E-value=0.00061 Score=62.75 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=23.8
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
..+..++|.||||+||||+|+.+++.+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456788999999999999999998753
No 257
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.08 E-value=0.00079 Score=59.05 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=21.2
Q ss_pred CCCeeEeecCCCCchhHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGR 228 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~ 228 (445)
+..-++|+||||+|||++++.++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344688999999999999999998
No 258
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.08 E-value=0.00035 Score=59.93 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=28.4
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 249 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l 249 (445)
.|+|.|+||+||||+|+.|++.++..+. .+..++.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~----~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGI----NNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTC----CEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCc----eEEEEECChH
Confidence 5889999999999999999999875332 3545543333
No 259
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.08 E-value=0.00038 Score=66.44 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=22.9
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
..++|.||+|+|||++|..|++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~ 28 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNG 28 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCC
Confidence 35788999999999999999998754
No 260
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.06 E-value=0.0023 Score=54.92 Aligned_cols=25 Identities=16% Similarity=-0.049 Sum_probs=20.7
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
-.+++||+|+|||+.+-.++..+..
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~ 34 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKI 34 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 5678999999999988888877754
No 261
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.05 E-value=0.00028 Score=65.85 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=22.8
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
..++|.||+|+|||++|..||+.++.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~ 66 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPL 66 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCC
Confidence 46889999999999999999987653
No 262
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.04 E-value=0.0033 Score=59.56 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=23.9
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
...+++.||+|+||||+.+++...+..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 346889999999999999999998865
No 263
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.03 E-value=0.00049 Score=58.80 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.0
Q ss_pred CeeEeecCCCCchhHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
.+|+|+||+|+||||+++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999987664
No 264
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.03 E-value=0.00086 Score=58.79 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.1
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
.+.-|+|.||||+||+|.|+.|++.++
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 445677899999999999999999874
No 265
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.01 E-value=0.00035 Score=58.92 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=23.0
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
+..+.|.||||+||||+++.|+..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999998865
No 266
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.99 E-value=0.00085 Score=59.30 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.6
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
..-+.|.||+|+||||+++.++...
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999999754
No 267
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.99 E-value=0.00067 Score=58.44 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=22.5
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
....++|.||+|+||||+++.|....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45578899999999999999998764
No 268
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.99 E-value=0.00063 Score=61.67 Aligned_cols=41 Identities=22% Similarity=0.294 Sum_probs=30.0
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 250 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~ 250 (445)
+..++|.|+||+||||+|+.+++.+...+. +++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~----~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNI----DVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC----CEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCC----EEEEECchHHH
Confidence 456889999999999999999998765332 45434544443
No 269
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.98 E-value=0.00094 Score=62.68 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.3
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
+...++|+||||+|||++|..++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 34568899999999999999998764
No 270
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.98 E-value=0.00042 Score=61.07 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=24.6
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
++..++|.|+||+||||+|+.|++.++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4567999999999999999999998753
No 271
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.97 E-value=0.0015 Score=57.19 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=25.8
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCC
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGI 235 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~ 235 (445)
..++++.|+||||||++|-.+|..+...+.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~ 35 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGV 35 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence 457999999999999999999999877553
No 272
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.97 E-value=0.0012 Score=58.82 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.7
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
....++|+||||+|||++++.++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3456889999999999999999975
No 273
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.96 E-value=0.0039 Score=62.29 Aligned_cols=76 Identities=13% Similarity=0.101 Sum_probs=49.3
Q ss_pred cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHH
Q 013316 271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK 350 (445)
Q Consensus 271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~ 350 (445)
-+|+|||++.+..... ....+.+..+.+.-....+.+|++|.+...+.+ ...++.-|...|.|...+..+...
T Consensus 345 ivvVIDE~~~L~~~~~----~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I---~~~Iran~~~RI~lrv~s~~Dsr~ 417 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG----KKVEELIARIAQKARAAGIHLILATQRPSVDVI---TGLIKANIPTRIAFQVSSKIDSRT 417 (574)
T ss_dssp EEEEESCCTTHHHHTC----HHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTS---CHHHHHTCCEEEEECCSCHHHHHH
T ss_pred EEEEEeCHHHHhhhhh----HHHHHHHHHHHHHHhhCCeEEEEEecCcccccc---cHHHHhhhccEEEEEcCCHHHHHH
Confidence 5899999998865221 112233444444444456777777654433222 455777888889999999999888
Q ss_pred HHH
Q 013316 351 ILH 353 (445)
Q Consensus 351 il~ 353 (445)
|+.
T Consensus 418 ILd 420 (574)
T 2iut_A 418 ILD 420 (574)
T ss_dssp HHS
T ss_pred hcC
Confidence 875
No 274
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.96 E-value=0.0004 Score=62.70 Aligned_cols=25 Identities=20% Similarity=0.090 Sum_probs=22.4
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+++.||||+||||+|+.||+.++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCC
Confidence 4789999999999999999998764
No 275
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.96 E-value=0.00053 Score=59.49 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=24.0
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+..++|.|+||+||||+|+.|++.++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999999998753
No 276
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.96 E-value=0.00036 Score=59.90 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=23.9
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+..++|.|+||+||||+|+.+++.++.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 32 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3457889999999999999999988753
No 277
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.95 E-value=0.00052 Score=58.80 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=23.8
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
..++|.|+||+||||+++.|++.++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999998874
No 278
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.93 E-value=0.00039 Score=59.87 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=24.4
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+..++|.|+||+||||+|+.+++.++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3567999999999999999999998754
No 279
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.93 E-value=0.00037 Score=59.33 Aligned_cols=27 Identities=33% Similarity=0.283 Sum_probs=20.0
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+..++|.|+||+||||+|+.+++.++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~ 31 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPG 31 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 457889999999999999999988765
No 280
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.93 E-value=0.00044 Score=58.24 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=23.3
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
..++|.|+||+||||+|+.+++.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGY 28 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36899999999999999999998764
No 281
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.91 E-value=0.0026 Score=56.91 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.0
Q ss_pred CCCeeEeecCCCCchhHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGR 228 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~ 228 (445)
+...+.|.||+|+||||+++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 445688999999999999999984
No 282
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.90 E-value=0.0011 Score=56.70 Aligned_cols=29 Identities=34% Similarity=0.418 Sum_probs=25.2
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHc
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMV 233 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~ 233 (445)
.+..++|.|+||+||||+++.++..+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 44568899999999999999999998763
No 283
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.90 E-value=0.00051 Score=57.56 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.8
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.|+|.|+||+||||+|+.+++.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~ 26 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNI 26 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999998764
No 284
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.89 E-value=0.0068 Score=55.36 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.0
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
....++|+||||+|||++++.++..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 344688999999999999999998664
No 285
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.89 E-value=0.00047 Score=58.45 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.3
Q ss_pred CeeEeecCCCCchhHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGR 228 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~ 228 (445)
..++|.|+||+||||+|+.+++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4688999999999999999998
No 286
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.88 E-value=0.00076 Score=58.95 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=26.3
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 234 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~ 234 (445)
.+..|+|.|+||+||||+|+.|++.++..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 456789999999999999999999988744
No 287
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.88 E-value=0.00086 Score=60.11 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=24.5
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
..+..|+|.||||+||||+|+.|++.++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3566899999999999999999998764
No 288
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.88 E-value=0.00065 Score=60.48 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=24.7
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+..++|.|+||+||||+|+.|++.++.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567999999999999999999998754
No 289
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.88 E-value=0.0031 Score=71.75 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=50.9
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccccccc----cCC-----------chhHHHHHH---
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF----VGH-----------TGPKTRRRI--- 265 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~~~~----~g~-----------~~~~~~~~~--- 265 (445)
.+...++|+|+||+|||++|..++..+... ..+++.++......++ +|- +...+...+
T Consensus 730 ~~G~lilIaG~PG~GKTtLalqlA~~~a~~----g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l 805 (2050)
T 3cmu_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL 805 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhc----CCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHH
Confidence 345578899999999999999999988653 2367777666533332 331 122222222
Q ss_pred -HHccCcEEEEcCcccccc
Q 013316 266 -KEAEGGILFVDEAYRLIP 283 (445)
Q Consensus 266 -~~a~~~il~lDEid~l~~ 283 (445)
.+...++||||.+..+.+
T Consensus 806 ~~~~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 806 ARSGAVDVIVVDSVAALTP 824 (2050)
T ss_dssp HHHTCCSEEEESCGGGCCC
T ss_pred hhccCCCEEEEcchhhhcc
Confidence 234568999999999986
No 290
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.87 E-value=0.00045 Score=60.76 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=23.9
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
...++|.|+||+||||+|+.|++.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCc
Confidence 457899999999999999999998753
No 291
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.85 E-value=0.00041 Score=59.65 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.4
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+..|+|.|+||+||||+|+.+++.++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456889999999999999999988753
No 292
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.85 E-value=0.00055 Score=60.38 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=24.6
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+..++|.||||+||||+|+.|++.++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567999999999999999999998754
No 293
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=96.82 E-value=0.00074 Score=49.34 Aligned_cols=74 Identities=11% Similarity=0.139 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCCh
Q 013316 343 FNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDT 422 (445)
Q Consensus 343 ~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~ 422 (445)
++.++|.+||+.++++. .+.++++.+.++..+.+++ |.++.+++..|......+
T Consensus 1 ~d~~~R~~Il~~~l~~~---------~~~~~vdl~~la~~t~G~S---------GADi~~l~~eA~~~a~~~-------- 54 (83)
T 3aji_B 1 MDRRQKRLIFSTITSKM---------NLSEEVDLEDYVARPDKIS---------GADINSICQESGMLAVRE-------- 54 (83)
T ss_dssp CCHHHHHHHHHHHHTTS---------CBCTTCCTHHHHTSSCCCC---------HHHHHHHHHHHHHGGGTS--------
T ss_pred CCHHHHHHHHHHHhCCC---------CCCcccCHHHHHHHcCCCC---------HHHHHHHHHHHHHHHHHh--------
Confidence 46789999999999875 3455677777776555444 778888888874332221
Q ss_pred hhhhhccHHHHHHHHHHHHhc
Q 013316 423 DELRTITLEDLEAGLKLLLRL 443 (445)
Q Consensus 423 ~~~~~i~~~d~~~a~~~~~~~ 443 (445)
....|+.+||..|++.+.|.
T Consensus 55 -~~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 55 -NRYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp -CCSSBCHHHHHHHHHHHCC-
T ss_pred -ccCCcCHHHHHHHHHHHccC
Confidence 12479999999999998763
No 294
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.82 E-value=0.00057 Score=59.97 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.3
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.|+|.||||+||||+|+.|++.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999988753
No 295
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.81 E-value=0.00055 Score=59.07 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.9
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+..++|.|+||+||||+|+.|++.++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~ 38 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGF 38 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999999998753
No 296
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.81 E-value=0.00056 Score=61.74 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=24.3
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
..+..++|.|+||+||||+|+.|++.++
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456788999999999999999998865
No 297
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.80 E-value=0.00047 Score=60.49 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.6
Q ss_pred eeEeecCCCCchhHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
.++|.||||+||||+|+.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 298
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.79 E-value=0.00046 Score=58.06 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=20.2
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
..++|.||||+||||+|+.+ +.++
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 35889999999999999999 5543
No 299
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.79 E-value=0.00044 Score=61.31 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=23.8
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+..++|.|+||+||||+|+.|++.++.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4567999999999999999999987643
No 300
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.78 E-value=0.00054 Score=58.47 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=22.9
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
..++|.|+||+||||+|+.+++.++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~ 30 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGF 30 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46889999999999999999987753
No 301
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.77 E-value=0.00043 Score=59.39 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=21.6
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
....+.|.||||+||||+++.|+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3456889999999999999999875
No 302
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.76 E-value=0.0021 Score=54.83 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=20.7
Q ss_pred eeEeecCCCCchh-HHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKT-MVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt-~~A~~la~~~~~ 232 (445)
-.++|||.|+||| .+.+++......
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~ 47 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIA 47 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 4567999999999 888998887654
No 303
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.76 E-value=0.00089 Score=58.00 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.7
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
.+..+.|.||+|+||||+++.|+..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 455788999999999999999998873
No 304
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=96.76 E-value=0.00088 Score=49.54 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHhcccccccccccccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCCCChh
Q 013316 344 NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTD 423 (445)
Q Consensus 344 ~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~~~~~ 423 (445)
|.++|.+||+.++++. .+.++++.+.++..+.+++ |.++.+++..|.-....+
T Consensus 2 d~~~R~~Il~~~~~~~---------~~~~dvdl~~lA~~t~G~S---------GADl~~l~~eAa~~a~r~--------- 54 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSM---------SVERGIRWELISRLCPNST---------GAELRSVCTEAGMFAIRA--------- 54 (88)
T ss_dssp CSSHHHHHHHHHHTTS---------CBCSCCCHHHHHHTCSSCC---------HHHHHHHHHHHHHHHHHH---------
T ss_pred CHHHHHHHHHHHHCCC---------CCCCccCHHHHHHHcCCCc---------HHHHHHHHHHHHHHHHHh---------
Confidence 5678999999999875 4556788888777665555 677788887773322222
Q ss_pred hhhhccHHHHHHHHHHHHh
Q 013316 424 ELRTITLEDLEAGLKLLLR 442 (445)
Q Consensus 424 ~~~~i~~~d~~~a~~~~~~ 442 (445)
....|+.+||.+|++.+.+
T Consensus 55 ~~~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 55 RRKVATEKDFLKAVDKVIS 73 (88)
T ss_dssp SCSSBCHHHHHHHHHHHTC
T ss_pred ccccCCHHHHHHHHHHHhc
Confidence 1236999999999998754
No 305
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.74 E-value=0.0011 Score=57.89 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=26.1
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 234 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~ 234 (445)
.+..++|.|+||+||||+|+.+++.++..+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 356789999999999999999999988743
No 306
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.71 E-value=0.0032 Score=54.90 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=30.1
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHH-HcCCCCCCCeEEeecccc
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLY-MVGILPTDRVTEVQRTDL 249 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~-~~~~~~~~~~~~~~~~~l 249 (445)
.+..++|.|+||+||||+++.+++.+. ..+. +++.++...+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~----~~~~~~~d~~ 65 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRV----HAYRLDGDNI 65 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCC----CEEEECHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCC----cEEEECChHH
Confidence 345788999999999999999999887 3232 4555554433
No 307
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.70 E-value=0.00093 Score=57.86 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=24.7
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+..+.|.||+|+||||+++.|+..+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~ 51 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQ 51 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4556889999999999999999999875
No 308
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.69 E-value=0.0011 Score=56.05 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.2
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
..++|.||||+||||+++.++..++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 4688999999999999999998764
No 309
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.68 E-value=0.00071 Score=58.68 Aligned_cols=28 Identities=25% Similarity=0.320 Sum_probs=23.6
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
..+..|+|.|+||+||||+|+.|++.++
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3445688999999999999999998754
No 310
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.67 E-value=0.00088 Score=58.36 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.9
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+..|+|.|+||+||||+|+.|++.++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 346889999999999999999998875
No 311
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.66 E-value=0.0019 Score=54.71 Aligned_cols=38 Identities=26% Similarity=0.279 Sum_probs=28.8
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 247 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~ 247 (445)
...+.|.|++|+||||+++.++..+...+. +++.++..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~----~~i~~d~~ 42 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGI----PCYTLDGD 42 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC----CEEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCC----cEEEECCh
Confidence 446889999999999999999998844222 56665543
No 312
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.65 E-value=0.0035 Score=70.38 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=49.6
Q ss_pred CCCCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc----ccccCC-----------chhHHHHHH--
Q 013316 203 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVGH-----------TGPKTRRRI-- 265 (445)
Q Consensus 203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~----~~~~g~-----------~~~~~~~~~-- 265 (445)
..+...++|+||||+|||++|..++......+. ++..++..... ....|- +...+...+
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~----~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK----TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCC----CeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 345567999999999999999999998876332 55555544322 111221 122222222
Q ss_pred --HHccCcEEEEcCcccccc
Q 013316 266 --KEAEGGILFVDEAYRLIP 283 (445)
Q Consensus 266 --~~a~~~il~lDEid~l~~ 283 (445)
++....+|+||.+..+.+
T Consensus 805 lv~~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HHHHTCCSEEEESCSTTCCC
T ss_pred HHHccCCCEEEEechhhhcc
Confidence 334568999999999985
No 313
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.63 E-value=0.0021 Score=55.02 Aligned_cols=26 Identities=38% Similarity=0.401 Sum_probs=23.0
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHHc
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYMV 233 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~~ 233 (445)
.+.|.|+||+||||+|+.+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQK 27 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 47899999999999999999988543
No 314
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.62 E-value=0.012 Score=52.19 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=17.1
Q ss_pred CeeEeecCCCCchhHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILG 227 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la 227 (445)
..+++.||+|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 579999999999998665443
No 315
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.61 E-value=0.0012 Score=57.90 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.4
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.++|.|+||+||||+|+.|++.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~ 26 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGI 26 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999998743
No 316
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.60 E-value=0.0014 Score=56.98 Aligned_cols=26 Identities=15% Similarity=-0.061 Sum_probs=20.5
Q ss_pred eEeecCCCCchhHHHHHHHHHHHHcC
Q 013316 209 MAFLGNPGTGKTMVARILGRLLYMVG 234 (445)
Q Consensus 209 vll~Gp~GtGKt~~A~~la~~~~~~~ 234 (445)
.+++||.|+|||+.+-.++......+
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g 56 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAK 56 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 45799999999999888877765433
No 317
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.60 E-value=0.0028 Score=59.94 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=21.3
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
...++|+||||+|||++|..++...
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999998763
No 318
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.60 E-value=0.0042 Score=59.77 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=20.6
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
+..-++|+||||+|||++++.++-.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4456889999999999999977643
No 319
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.59 E-value=0.011 Score=65.65 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=35.5
Q ss_pred hhhcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 170 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 170 ~l~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
.++|.+...++|.+++... ......+.|+|++|+|||++|+.+++..
T Consensus 125 ~~vgR~~~~~~l~~~l~~~--------------~~~~~~v~i~G~gG~GKTtLa~~~~~~~ 171 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKL--------------NGEPGWVTIYGMAGCGKSVLAAEAVRDH 171 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTT--------------TTSCEEEEEECSTTSSHHHHHHHHTCCH
T ss_pred eeccHHHHHHHHHHHHhhc--------------cCCCCEEEEEeCCCCCHHHHHHHHhcCh
Confidence 4899998888888754311 2234568899999999999999887754
No 320
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.57 E-value=0.0079 Score=57.40 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=24.3
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+...+++.||+|+||||+.++++..+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 3446889999999999999999998864
No 321
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.56 E-value=0.0074 Score=51.58 Aligned_cols=30 Identities=20% Similarity=0.045 Sum_probs=25.2
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCC
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGI 235 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~ 235 (445)
...+++|+++|+|||++|-.++......+.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~ 57 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGK 57 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 457899999999999999999988766553
No 322
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.52 E-value=0.0012 Score=57.38 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=23.1
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
.+..++|.||||+||||+++.|+..+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45678999999999999999999875
No 323
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.52 E-value=0.0042 Score=62.10 Aligned_cols=29 Identities=34% Similarity=0.678 Sum_probs=25.2
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVG 234 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~ 234 (445)
+..|++.|.||+||||+|+.|++.++..+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 44688999999999999999999998744
No 324
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.51 E-value=0.0013 Score=56.87 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=22.7
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.++|.|+||+||||+++.|++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5789999999999999999998864
No 325
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.47 E-value=0.0018 Score=56.04 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.8
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
+..++|.|+||+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999876
No 326
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.47 E-value=0.0027 Score=54.51 Aligned_cols=27 Identities=30% Similarity=0.514 Sum_probs=23.4
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYMVG 234 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~~~ 234 (445)
-|.|.|++|+||||+++.+++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g 28 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 478999999999999999999985533
No 327
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.46 E-value=0.0016 Score=57.43 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.9
Q ss_pred eeEeecCCCCchhHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
.++|.|+||+||||+|+.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999874
No 328
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.46 E-value=0.0017 Score=57.43 Aligned_cols=28 Identities=39% Similarity=0.385 Sum_probs=24.0
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+..+.|.||||+||||+|+.|++.++.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3567899999999999999999998753
No 329
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.44 E-value=0.0018 Score=57.14 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=23.4
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+..+.|.||||+||||+++.|+..++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~ 31 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQW 31 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346889999999999999999988753
No 330
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.43 E-value=0.0068 Score=60.00 Aligned_cols=77 Identities=12% Similarity=0.082 Sum_probs=46.3
Q ss_pred cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCchhHHHHHhhCcccccccccceeCCCCCHHHHHH
Q 013316 271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK 350 (445)
Q Consensus 271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~ 350 (445)
-+|+|||+..+.... .....+.+..|.+.-....+.+|++|.....+.+ ...++..|...|.|...+..|...
T Consensus 299 ivlvIDE~~~ll~~~----~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl---~~~i~~n~~~RI~lrv~s~~dsr~ 371 (512)
T 2ius_A 299 IVVLVDEFADLMMTV----GKKVEELIARLAQKARAAGIHLVLATQRPSVDVI---TGLIKANIPTRIAFTVSSKIDSRT 371 (512)
T ss_dssp EEEEEETHHHHHHHH----HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTS---CHHHHHHCCEEEEECCSSHHHHHH
T ss_pred EEEEEeCHHHHHhhh----hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccc---cHHHHhhcCCeEEEEcCCHHHHHH
Confidence 489999997776411 0111122333333333335666676654432221 455677888889999999999998
Q ss_pred HHHH
Q 013316 351 ILHI 354 (445)
Q Consensus 351 il~~ 354 (445)
|+..
T Consensus 372 ilg~ 375 (512)
T 2ius_A 372 ILDQ 375 (512)
T ss_dssp HHSS
T ss_pred hcCC
Confidence 8764
No 331
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.42 E-value=0.0076 Score=55.50 Aligned_cols=75 Identities=11% Similarity=0.000 Sum_probs=43.0
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccccc----ccccCC-----------chhHH-HHHH------
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVGH-----------TGPKT-RRRI------ 265 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l~----~~~~g~-----------~~~~~-~~~~------ 265 (445)
-++++||||+|||+++-.++......+ ..+.++.++...-. .+-+|- +...+ ..++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g--~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i 107 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY--PDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAI 107 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC--TTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC--CCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHh
Confidence 578999999999999877776654421 01244455543311 011111 22222 2222
Q ss_pred HHccCcEEEEcCccccccC
Q 013316 266 KEAEGGILFVDEAYRLIPM 284 (445)
Q Consensus 266 ~~a~~~il~lDEid~l~~~ 284 (445)
++....+|+||-|..+.++
T Consensus 108 ~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 108 ERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp CTTCCEEEEEECSTTCBCC
T ss_pred hccCceEEEEecccccccc
Confidence 2234689999999999864
No 332
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.40 E-value=0.0018 Score=58.02 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=24.3
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+..+.|.||||+||||+++.|++.++.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3567999999999999999999988753
No 333
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.37 E-value=0.0021 Score=56.06 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.0
Q ss_pred CeeEeecCCCCchhHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
.++++.+|+|+|||.++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999887776543
No 334
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.36 E-value=0.0024 Score=54.26 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=21.9
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
...+.|.||+|+||||+++.|+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468899999999999999998865
No 335
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.36 E-value=0.0021 Score=55.68 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=22.7
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
.+..+.|.||+|+||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34578899999999999999998865
No 336
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.33 E-value=0.0022 Score=57.52 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=24.2
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
...+.|.|++|+||||+++.|+..++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 457999999999999999999998865
No 337
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.29 E-value=0.0025 Score=55.56 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=22.5
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
.+..+.|.||+|+||||+++.|+..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568899999999999999999875
No 338
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.29 E-value=0.031 Score=51.44 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=24.7
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+..++|.||+|+||||++..+|..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999998864
No 339
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.26 E-value=0.0048 Score=57.70 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=20.9
Q ss_pred CCeeEeecCCCCchhHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
...++|+||||+|||++|..++..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 345889999999999999999875
No 340
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.25 E-value=0.0032 Score=54.59 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.7
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+.|.|++|+||||+|+.+++.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~ 28 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGV 28 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 6889999999999999999998764
No 341
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.21 E-value=0.033 Score=48.85 Aligned_cols=44 Identities=18% Similarity=0.391 Sum_probs=26.4
Q ss_pred cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHH
Q 013316 271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMK 321 (445)
Q Consensus 271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~ 321 (445)
.+|++||+|.+.... +. ..+..++..+.. .++++..||-+....
T Consensus 169 ~~lViDEah~~~~~~------~~-~~~~~i~~~~~~~~~~l~~SAT~~~~~~ 213 (228)
T 3iuy_A 169 TYLVIDEADKMLDME------FE-PQIRKILLDVRPDRQTVMTSATWPDTVR 213 (228)
T ss_dssp CEEEECCHHHHHHTT------CH-HHHHHHHHHSCSSCEEEEEESCCCHHHH
T ss_pred eEEEEECHHHHhccc------hH-HHHHHHHHhCCcCCeEEEEEeeCCHHHH
Confidence 789999999987521 22 334455555654 445555565555444
No 342
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.14 E-value=0.0026 Score=54.40 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.2
Q ss_pred eeEeecCCCCchhHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGR 228 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~ 228 (445)
.++|.||+|+||||+++.|+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 467899999999999999986
No 343
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.14 E-value=0.018 Score=56.60 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=23.7
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+..-+++.|+||+|||++|..++.....
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4446889999999999999999987754
No 344
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.13 E-value=0.026 Score=54.72 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.3
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
.+.-+++.|+||+||||+|+.+++.+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 34568889999999999999998765
No 345
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.12 E-value=0.011 Score=50.99 Aligned_cols=28 Identities=25% Similarity=0.213 Sum_probs=24.0
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+..+.+.||+|+||||+++.++..+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3446789999999999999999998864
No 346
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.11 E-value=0.0023 Score=57.54 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.4
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+..|.|.|+||+||||+|+.|++.++.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4556889999999999999999998765
No 347
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.09 E-value=0.0036 Score=54.51 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=24.0
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
....+.|.||+|+||||+++.|+..+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3446779999999999999999999874
No 348
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.09 E-value=0.0021 Score=55.68 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=20.7
Q ss_pred eeEeecCCCCchhHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
.+.|.|++|+||||+++.|+. ++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC
Confidence 588999999999999999998 53
No 349
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.07 E-value=0.054 Score=47.27 Aligned_cols=17 Identities=29% Similarity=0.257 Sum_probs=14.8
Q ss_pred CeeEeecCCCCchhHHH
Q 013316 207 PHMAFLGNPGTGKTMVA 223 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A 223 (445)
.++++.+|+|+|||.++
T Consensus 52 ~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 46999999999999763
No 350
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.05 E-value=0.0041 Score=53.75 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.7
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
...+.|.||+|+||||+++.|+..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3467899999999999999999864
No 351
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.05 E-value=0.0031 Score=54.40 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.2
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
.+..+.|.|++|+||||+|+.|++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4557889999999999999999986
No 352
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.03 E-value=0.0026 Score=54.62 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.7
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+.|+|++|+||||+|+.+++.++.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~ 38 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGA 38 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4678999999999999999987643
No 353
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.03 E-value=0.008 Score=56.36 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=22.7
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
...+++.||+|+||||+.++++..+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35799999999999999999987753
No 354
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.02 E-value=0.0026 Score=55.19 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.4
Q ss_pred eeEeecCCCCchhHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGR 228 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~ 228 (445)
.+.|.||+|+||||+++.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577999999999999999987
No 355
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.00 E-value=0.0091 Score=58.96 Aligned_cols=30 Identities=33% Similarity=0.661 Sum_probs=25.9
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 234 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~ 234 (445)
.+..|++.|.||+||||+++.+++.+....
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 455789999999999999999999988643
No 356
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.00 E-value=0.026 Score=60.32 Aligned_cols=42 Identities=26% Similarity=0.221 Sum_probs=32.8
Q ss_pred hcchHHHHHHHHHHHHhhhHHHHHHcCCCCCCCCCCeeEeecCCCCchhHHHHHHHH
Q 013316 172 VGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR 228 (445)
Q Consensus 172 ~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKt~~A~~la~ 228 (445)
+|.+....+|.+++... .....+.++||+|+|||++|+.+++
T Consensus 131 VGRe~eLeeL~elL~~~---------------d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL---------------RPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC---------------CSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc---------------CCCeEEEEEcCCCccHHHHHHHHHH
Confidence 88888888887754321 2245788999999999999999985
No 357
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.97 E-value=0.0088 Score=58.29 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.3
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
...++|+||||+|||+++..++.....
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 457899999999999999999887654
No 358
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.96 E-value=0.0038 Score=54.36 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=23.0
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
+..+.|.||+|+||||+++.|+..+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44677999999999999999999876
No 359
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.94 E-value=0.0042 Score=52.96 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.9
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
..+.|.||+|+||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3578999999999999999998764
No 360
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.94 E-value=0.0044 Score=53.48 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.3
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
...+.|.||+|+||||+++.|...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35688999999999999999998763
No 361
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.86 E-value=0.089 Score=45.13 Aligned_cols=44 Identities=18% Similarity=0.474 Sum_probs=26.2
Q ss_pred cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHH
Q 013316 271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMK 321 (445)
Q Consensus 271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~ 321 (445)
.+|++||+|.+... ++ ...+..++..+.. .++++..||-+....
T Consensus 148 ~~lViDEah~~~~~------~~-~~~l~~i~~~~~~~~~~l~~SAT~~~~~~ 192 (206)
T 1vec_A 148 QMIVLDEADKLLSQ------DF-VQIMEDIILTLPKNRQILLYSATFPLSVQ 192 (206)
T ss_dssp CEEEEETHHHHTST------TT-HHHHHHHHHHSCTTCEEEEEESCCCHHHH
T ss_pred CEEEEEChHHhHhh------Cc-HHHHHHHHHhCCccceEEEEEeeCCHHHH
Confidence 78999999998752 12 2445566666653 345555555444443
No 362
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.86 E-value=0.0053 Score=54.55 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=25.0
Q ss_pred CCCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 203 ARRPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
...+..+.|.|++|+||||+++.|+..++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~ 42 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGF 42 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 445667889999999999999999997753
No 363
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.84 E-value=0.0041 Score=57.49 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.8
Q ss_pred CeeEeecCCCCchhHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
..++|.|+||+||||+|+.+++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999999985
No 364
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.83 E-value=0.066 Score=49.33 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=27.8
Q ss_pred cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHHH
Q 013316 271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKR 322 (445)
Q Consensus 271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~~ 322 (445)
.+|+|||+|.+.... .....+..++..+.. .+++++.||-+.....
T Consensus 237 ~~lVlDEad~l~~~~------~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~ 283 (300)
T 3fmo_B 237 KVFVLDEADVMIATQ------GHQDQSIRIQRMLPRNCQMLLFSATFEDSVWK 283 (300)
T ss_dssp SEEEETTHHHHHHST------THHHHHHHHHTTSCTTCEEEEEESCCCHHHHH
T ss_pred eEEEEeCHHHHhhcc------CcHHHHHHHHHhCCCCCEEEEEeccCCHHHHH
Confidence 789999999987421 122344456666654 3455556666655543
No 365
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.81 E-value=0.0047 Score=55.56 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
...+.|.||+|+||||+++.|++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 346889999999999999999988753
No 366
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.81 E-value=0.035 Score=53.95 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=25.1
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
..+..++|.|+||+||||++..++..+..
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34568999999999999999999998864
No 367
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.81 E-value=0.057 Score=50.16 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=23.5
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+..-+++.|+||+|||++|..++.....
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4456889999999999999999877654
No 368
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.80 E-value=0.041 Score=57.42 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=17.4
Q ss_pred CCeeEeecCCCCchhHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARI 225 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~ 225 (445)
..++++.||+|+|||+.+-.
T Consensus 46 ~~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEcCCCCcHHHHHHH
Confidence 46899999999999998843
No 369
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.79 E-value=0.016 Score=59.78 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=23.8
Q ss_pred CeeEeecCCCCchhH-HHHHHHHHHHHcCCCCCCCeEEeeccc
Q 013316 207 PHMAFLGNPGTGKTM-VARILGRLLYMVGILPTDRVTEVQRTD 248 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~-~A~~la~~~~~~~~~~~~~~~~~~~~~ 248 (445)
...|+.||||||||+ ++..|.+.+.. + ..+..+..+.
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~~~-~----~~ILv~a~TN 243 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAVKQ-G----LKVLCCAPSN 243 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT-T----CCEEEEESSH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhC-C----CeEEEEcCch
Confidence 467899999999995 55555555543 2 2555555443
No 370
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.74 E-value=0.0089 Score=54.94 Aligned_cols=27 Identities=19% Similarity=0.461 Sum_probs=20.6
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+.-|.+.||+|+||||+|+.+++.++.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~ 31 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRR 31 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345789999999999999999998874
No 371
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.73 E-value=0.0043 Score=57.98 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=22.4
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
..+++.||+|+|||++|+.|++.++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3678999999999999999999875
No 372
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.73 E-value=0.0052 Score=53.80 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.4
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+..+.|.|++|+|||++++.+++.++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~ 29 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSM 29 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 356889999999999999999987653
No 373
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.71 E-value=0.064 Score=48.30 Aligned_cols=45 Identities=20% Similarity=0.393 Sum_probs=27.3
Q ss_pred cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHHH
Q 013316 271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKR 322 (445)
Q Consensus 271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~~ 322 (445)
.+|+|||+|.+.... +. ..+..++..+.. .+++++.||-+.....
T Consensus 203 ~~lViDEah~l~~~~------~~-~~l~~i~~~~~~~~q~l~~SAT~~~~v~~ 248 (262)
T 3ly5_A 203 QCLVIDEADRILDVG------FE-EELKQIIKLLPTRRQTMLFSATQTRKVED 248 (262)
T ss_dssp CEEEECSHHHHHHTT------CH-HHHHHHHHHSCSSSEEEEECSSCCHHHHH
T ss_pred CEEEEcChHHHhhhh------HH-HHHHHHHHhCCCCCeEEEEEecCCHHHHH
Confidence 789999999987521 21 445566666654 3455555655555443
No 374
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.70 E-value=0.0049 Score=53.98 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.7
Q ss_pred CCeeEeecCCCCchhHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGR 228 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~ 228 (445)
+..+.|.|++|+||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 44688999999999999999987
No 375
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.69 E-value=0.024 Score=49.81 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=22.5
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
..+-|.||||+||||.|+.|++.++.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~ 34 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGI 34 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCC
Confidence 35678999999999999999998754
No 376
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.69 E-value=0.0029 Score=55.17 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.7
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
-+.|.|++|+||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999864
No 377
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.67 E-value=0.0057 Score=53.08 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=21.8
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
.+..+.+.|+||+||||+|+.|+..+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34457799999999999999998764
No 378
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.65 E-value=0.028 Score=49.25 Aligned_cols=92 Identities=17% Similarity=0.123 Sum_probs=46.4
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecc-------cccccccCCc-----hhHHHHHHHHc-cCcEEE
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT-------DLVGEFVGHT-----GPKTRRRIKEA-EGGILF 274 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~-------~l~~~~~g~~-----~~~~~~~~~~a-~~~il~ 274 (445)
-.+++||.|+|||+.+-..+......+. .++.+... .+.+.. |.+ -....++++.+ ..-+|+
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~----kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~~~~dvVi 95 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQY----KCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEALGVAVIG 95 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTC----CEEEEEETTCCCC------------CEEEEESSGGGGHHHHTTCSEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCC----eEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHhccCCEEE
Confidence 4567899999999877666555543221 22222211 111110 110 00001233333 346999
Q ss_pred EcCccccccCCCCCCchhHHHHHHHHHhhccCCcEEEEEecCc
Q 013316 275 VDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 317 (445)
Q Consensus 275 lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~a~~~ 317 (445)
|||+..+. . +.++...+++..+.||+++-.
T Consensus 96 IDEaQF~~------------~-v~el~~~l~~~gi~VI~~GL~ 125 (234)
T 2orv_A 96 IDEGQFFP------------D-IVEFCEAMANAGKTVIVAALD 125 (234)
T ss_dssp ESSGGGCT------------T-HHHHHHHHHHTTCEEEEECCS
T ss_pred EEchhhhh------------h-HHHHHHHHHhCCCEEEEEecc
Confidence 99997763 1 445555665556677777654
No 379
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.64 E-value=0.0071 Score=53.50 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.1
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
...-++|.||||+||||+++.|++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3446889999999999999999998864
No 380
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.63 E-value=0.054 Score=47.15 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=17.8
Q ss_pred CeeEeecCCCCchhHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
..+++.+|+|+|||..+-..+..
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHH
Confidence 46999999999999876554433
No 381
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.61 E-value=0.049 Score=46.81 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.3
Q ss_pred CeeEeecCCCCchhHHHH
Q 013316 207 PHMAFLGNPGTGKTMVAR 224 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~ 224 (445)
.++++.+|+|+|||..+-
T Consensus 39 ~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 479999999999998643
No 382
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.60 E-value=0.025 Score=55.37 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=23.5
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+..-+++.|+||+|||++|..++.....
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3446889999999999999999987654
No 383
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.58 E-value=0.018 Score=48.14 Aligned_cols=29 Identities=17% Similarity=0.072 Sum_probs=24.7
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVG 234 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~ 234 (445)
...+.|.|++|+||||++..+...+...+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g 32 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREG 32 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence 34688999999999999999999887543
No 384
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.58 E-value=0.014 Score=54.00 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=25.2
Q ss_pred CCCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 203 ARRPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
...+..+.|.||+|+||||+++.|+..+..
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 334556889999999999999999998864
No 385
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.57 E-value=0.049 Score=50.66 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=26.0
Q ss_pred CCCCCeeEeecCCCCchhHHHHHHHHHHHHc
Q 013316 203 ARRPPHMAFLGNPGTGKTMVARILGRLLYMV 233 (445)
Q Consensus 203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~~ 233 (445)
..++..++|.||+|+||||++..+|..+...
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3455578899999999999999999988753
No 386
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.57 E-value=0.0067 Score=55.51 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.3
Q ss_pred CCeeEeecCCCCchhHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGR 228 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~ 228 (445)
+..|.|.|+||+||||+|+.++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 44688999999999999999994
No 387
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.54 E-value=0.0054 Score=52.46 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=21.7
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
...++|.||||+|||++|..+++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999999998754
No 388
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.54 E-value=0.089 Score=50.02 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=17.7
Q ss_pred CCCeeEeecCCCCchhHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARIL 226 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~l 226 (445)
.+.++++.+|+|+|||..+-..
T Consensus 43 ~~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 43 PPRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp SCCCEEEECCTTSCHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHH
Confidence 3468999999999999866443
No 389
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.52 E-value=0.0081 Score=52.67 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=22.7
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
.....+.|.||+|+||||+++.|+...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345568899999999999999999865
No 390
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.51 E-value=0.067 Score=55.82 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=16.8
Q ss_pred CCeeEeecCCCCchhHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVAR 224 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~ 224 (445)
..++++.||+|+|||+++.
T Consensus 39 ~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAE 57 (720)
T ss_dssp TCEEEEECCGGGCHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 4689999999999999883
No 391
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.51 E-value=0.074 Score=47.45 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=15.4
Q ss_pred CeeEeecCCCCchhHHHH
Q 013316 207 PHMAFLGNPGTGKTMVAR 224 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~ 224 (445)
..+++.+|+|+|||..+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 579999999999998643
No 392
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.51 E-value=0.037 Score=48.97 Aligned_cols=17 Identities=29% Similarity=0.280 Sum_probs=14.8
Q ss_pred CeeEeecCCCCchhHHH
Q 013316 207 PHMAFLGNPGTGKTMVA 223 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A 223 (445)
..+++.+|+|+|||.++
T Consensus 68 ~~~li~apTGsGKT~~~ 84 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATF 84 (237)
T ss_dssp CCEEECCCSSHHHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 46999999999999764
No 393
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.51 E-value=0.0089 Score=54.90 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=24.8
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
..+..+.+.||+|+||||+|+.|+..+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34556779999999999999999999875
No 394
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.46 E-value=0.012 Score=52.28 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=26.4
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCC
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI 235 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~ 235 (445)
.+.-|+|.|++|+||||+++.+++.+...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~ 56 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGI 56 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 3557889999999999999999999987543
No 395
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.43 E-value=0.029 Score=54.30 Aligned_cols=22 Identities=27% Similarity=0.169 Sum_probs=17.8
Q ss_pred CeeEeecCCCCchhHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGR 228 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~ 228 (445)
.-.++.|+||||||++...++.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 3567899999999999877653
No 396
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.40 E-value=0.022 Score=52.66 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=24.9
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.++..++|.||+|+||||++..+|..+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 34556889999999999999999998865
No 397
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.37 E-value=0.21 Score=49.36 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=25.0
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMVG 234 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~~ 234 (445)
..+..|+|.|+||+||||++..|+..+...+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G 129 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKG 129 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 3456788999999999999999998887643
No 398
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.32 E-value=0.0077 Score=50.57 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=17.9
Q ss_pred CCeeEeecCCCCchhHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARIL 226 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~l 226 (445)
..-+.|.||+|+||||+++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 345789999999999999963
No 399
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.32 E-value=0.024 Score=57.55 Aligned_cols=40 Identities=28% Similarity=0.322 Sum_probs=30.4
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 248 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~ 248 (445)
.+..|+|.|.||+||||+|+.|++.+...+. +++.++...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~----~~v~lDgD~ 90 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGI----PCYTLDGDN 90 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEESHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC----eEEEechHH
Confidence 3456889999999999999999999854332 666665433
No 400
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.32 E-value=0.0081 Score=51.96 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=23.6
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
..|.|.||+|+|||++|+.||+.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 46889999999999999999999876
No 401
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.31 E-value=0.0061 Score=53.92 Aligned_cols=27 Identities=26% Similarity=0.191 Sum_probs=16.8
Q ss_pred CCCCeeEeecCCCCchhHHHHHHH-HHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILG-RLL 230 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la-~~~ 230 (445)
.....+.|.||+|+||||+++.|+ ..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 344568899999999999999999 764
No 402
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.27 E-value=0.01 Score=53.02 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=23.6
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+.-+-|.||+|+||||+++.|+..++.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 3445779999999999999999998754
No 403
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=95.25 E-value=0.077 Score=53.91 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=22.0
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
...+++.+|+|+|||.+|-.++..+..
T Consensus 198 ~~~~ll~~~TGsGKT~~~~~~~~~l~~ 224 (590)
T 3h1t_A 198 KKRSLITMATGTGKTVVAFQISWKLWS 224 (590)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCChHHHHHHHHHHHHh
Confidence 357899999999999998777776644
No 404
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.25 E-value=0.045 Score=53.91 Aligned_cols=24 Identities=29% Similarity=0.180 Sum_probs=19.9
Q ss_pred CeeEeecCCCCchhHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
..+++.+|+|+|||.++-.+....
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 359999999999999987776655
No 405
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.24 E-value=0.064 Score=49.81 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=17.6
Q ss_pred CeeEeecCCCCchhHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGR 228 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~ 228 (445)
.++++.+|+|+|||.++-..+.
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~ 53 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPIL 53 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHH
Confidence 4799999999999987655443
No 406
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.24 E-value=0.019 Score=50.01 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=25.4
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCC
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGI 235 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~ 235 (445)
..-|+|.|++|+||||+++.+++.+...+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 35 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGI 35 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 346789999999999999999999976443
No 407
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.22 E-value=0.012 Score=51.52 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=22.8
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
....+.|.||+|+||||+.+.|+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 344688999999999999999998753
No 408
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.21 E-value=0.068 Score=52.42 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=26.0
Q ss_pred CCCCCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 201 VGARRPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 201 ~~~~~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+....+..+.|.||+|+||||+++.|+..+..
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 33444556889999999999999999998865
No 409
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.20 E-value=0.11 Score=46.14 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=14.8
Q ss_pred CeeEeecCCCCchhHHH
Q 013316 207 PHMAFLGNPGTGKTMVA 223 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A 223 (445)
..+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 46999999999999864
No 410
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.19 E-value=0.013 Score=50.90 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=22.9
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
....+.|.||+|+||||+++.|+..+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 344678999999999999999998763
No 411
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.17 E-value=0.019 Score=48.32 Aligned_cols=28 Identities=36% Similarity=0.377 Sum_probs=24.0
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMV 233 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~ 233 (445)
...+.|.|++|+||||+++.+...+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 4568899999999999999999887653
No 412
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.14 E-value=0.02 Score=54.10 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=25.3
Q ss_pred CCCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 203 ARRPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
..++..+.|.||+|+||||+++.|+..+..
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 334556889999999999999999998864
No 413
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.14 E-value=0.015 Score=53.67 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=24.4
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+..+.|.||+|+||||+++.|+..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4557889999999999999999998864
No 414
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.13 E-value=0.013 Score=54.11 Aligned_cols=28 Identities=36% Similarity=0.618 Sum_probs=24.3
Q ss_pred CCCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 203 ARRPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
..+...+.|.||+|+||||+++.|+..+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3445678899999999999999999987
No 415
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.13 E-value=0.013 Score=54.42 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=23.7
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+.-+.|.||+|+||||+++.|+..+..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4446778999999999999999988763
No 416
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.12 E-value=0.014 Score=54.21 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=23.8
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+.-+.|.||+|+||||+++.|+..+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 3445779999999999999999998864
No 417
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.10 E-value=0.22 Score=43.74 Aligned_cols=44 Identities=18% Similarity=0.428 Sum_probs=26.2
Q ss_pred cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccCCc-EEEEEecCchhHH
Q 013316 271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-VVVIFAGYSEPMK 321 (445)
Q Consensus 271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~i~a~~~~~~~ 321 (445)
.+|++||+|.+.... +. ..+..++..+.... ++++.||-+....
T Consensus 173 ~~lViDEah~~~~~~------~~-~~~~~i~~~~~~~~~~l~~SAT~~~~~~ 217 (236)
T 2pl3_A 173 QMLVLDEADRILDMG------FA-DTMNAVIENLPKKRQTLLFSATQTKSVK 217 (236)
T ss_dssp CEEEETTHHHHHHTT------TH-HHHHHHHHTSCTTSEEEEEESSCCHHHH
T ss_pred cEEEEeChHHHhcCC------cH-HHHHHHHHhCCCCCeEEEEEeeCCHHHH
Confidence 689999999887421 11 34556666665444 4555555444443
No 418
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.10 E-value=0.01 Score=49.11 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.7
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
+...+.|.||.|+||||+.|.|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 33467899999999999999999987
No 419
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.10 E-value=0.081 Score=51.61 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=23.6
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
+..-+++.|+||+|||++|-.++.....
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHH
Confidence 4446889999999999999999887754
No 420
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.08 E-value=0.2 Score=44.20 Aligned_cols=44 Identities=18% Similarity=0.352 Sum_probs=26.6
Q ss_pred cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHH
Q 013316 271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMK 321 (445)
Q Consensus 271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~ 321 (445)
..|++||+|.+.... + ...+..++..+.. .++++..||-+....
T Consensus 178 ~~lViDEah~l~~~~------~-~~~~~~i~~~~~~~~q~~~~SAT~~~~~~ 222 (242)
T 3fe2_A 178 TYLVLDEADRMLDMG------F-EPQIRKIVDQIRPDRQTLMWSATWPKEVR 222 (242)
T ss_dssp CEEEETTHHHHHHTT------C-HHHHHHHHTTSCSSCEEEEEESCCCHHHH
T ss_pred cEEEEeCHHHHhhhC------c-HHHHHHHHHhCCccceEEEEEeecCHHHH
Confidence 689999999987522 2 2444566666654 345555565544443
No 421
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=95.07 E-value=0.062 Score=51.59 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.3
Q ss_pred CCCeeEeecCCCCchhHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVA 223 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A 223 (445)
....+++.+|+|+|||.++
T Consensus 63 ~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 63 PPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp SCCCEEEECCTTSCHHHHH
T ss_pred CCCeEEEECCCCchHHHHH
Confidence 3568999999999999875
No 422
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.00 E-value=0.28 Score=47.51 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=26.0
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHHc
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYMV 233 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~~ 233 (445)
.++..++|.|++|+||||++-.+|..+...
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 345678899999999999999999998774
No 423
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.99 E-value=0.064 Score=50.47 Aligned_cols=23 Identities=22% Similarity=0.083 Sum_probs=18.2
Q ss_pred CeeEeecCCCCchhHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
.++++.+|+|+|||+++-..+..
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHH
Confidence 58999999999999886554433
No 424
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.96 E-value=0.088 Score=50.34 Aligned_cols=21 Identities=29% Similarity=0.221 Sum_probs=16.6
Q ss_pred CeeEeecCCCCchhHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILG 227 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la 227 (445)
.++++.+|+|+|||.++-..+
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHH
Confidence 469999999999998664443
No 425
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.96 E-value=0.017 Score=50.71 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=25.7
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH-cC
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM-VG 234 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~-~~ 234 (445)
.+.-|.|.|++|+||||+++.+++.+.. .+
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g 50 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYG 50 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccC
Confidence 4556888999999999999999999876 44
No 426
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=94.96 E-value=0.12 Score=45.26 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=26.9
Q ss_pred cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHH
Q 013316 271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMK 321 (445)
Q Consensus 271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~ 321 (445)
.+|++||+|.+...+ .+ ...+..++..+.. .+++++.||-+....
T Consensus 168 ~~lViDEah~~~~~~-----~~-~~~~~~i~~~~~~~~~~l~lSAT~~~~~~ 213 (230)
T 2oxc_A 168 RLFILDEADKLLEEG-----SF-QEQINWIYSSLPASKQMLAVSATYPEFLA 213 (230)
T ss_dssp CEEEESSHHHHHSTT-----SS-HHHHHHHHHHSCSSCEEEEEESCCCHHHH
T ss_pred CEEEeCCchHhhcCc-----ch-HHHHHHHHHhCCCCCeEEEEEeccCHHHH
Confidence 589999999997532 11 2445566666654 345555565544433
No 427
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.94 E-value=0.017 Score=50.90 Aligned_cols=28 Identities=25% Similarity=0.231 Sum_probs=21.7
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMV 233 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~ 233 (445)
..-|+|.||+|+||||+++.|++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4568899999999999999999999764
No 428
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.94 E-value=0.1 Score=54.16 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=17.1
Q ss_pred CCeeEeecCCCCchhHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARI 225 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~ 225 (445)
..++++.+|+|+|||+++-.
T Consensus 40 ~~~~lv~apTGsGKT~~~~l 59 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEM 59 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHHH
Confidence 45899999999999998843
No 429
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=94.89 E-value=0.16 Score=55.54 Aligned_cols=100 Identities=18% Similarity=0.123 Sum_probs=53.5
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeeccc-cccc--------------ccCC------------ch
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD-LVGE--------------FVGH------------TG 258 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~-l~~~--------------~~g~------------~~ 258 (445)
...+++.||+|+|||+++-......-..+ ...+.+.+.. |..+ +.|. |.
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~~~l~~g----~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~~~~~~~IlV~Tp 274 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIAQSLKNK----QRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTT 274 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHHHHHHTT----CEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCBCCCSCSEEEEEH
T ss_pred CCCEEEECCCCCChHHHHHHHHHHHHhcC----CeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccccCCCCCEEEeCh
Confidence 35799999999999988755444332211 1333333332 1111 1121 34
Q ss_pred hHHHHHHHHc-----cCcEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecC
Q 013316 259 PKTRRRIKEA-----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGY 316 (445)
Q Consensus 259 ~~~~~~~~~a-----~~~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~ 316 (445)
..+...+... .-++|+|||+|.+... .. ......++..+.. .++++..||-
T Consensus 275 e~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~------~r-g~~~e~ii~~l~~~~qvl~lSATi 331 (1108)
T 3l9o_A 275 EILRSMLYRGSEVMREVAWVIFDEVHYMRDK------ER-GVVWEETIILLPDKVRYVFLSATI 331 (1108)
T ss_dssp HHHHHHHHHCSSHHHHEEEEEEETGGGTTSH------HH-HHHHHHHHHHSCTTSEEEEEECSC
T ss_pred HHHHHHHHcCccccccCCEEEEhhhhhcccc------ch-HHHHHHHHHhcCCCceEEEEcCCC
Confidence 4444444332 2379999999999641 11 1344555555554 3455555653
No 430
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.85 E-value=0.16 Score=54.06 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=21.1
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
...++|.||.|+||||+.|.++...
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHHHH
Confidence 3468899999999999999998643
No 431
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.85 E-value=0.018 Score=52.90 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=24.6
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+..-++|.||||+|||++++.++..+..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34456889999999999999999988764
No 432
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.83 E-value=0.015 Score=51.07 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=23.4
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
..|.+.|++|||||++|+.||+.++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~ 40 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGI 40 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCC
Confidence 45778999999999999999999875
No 433
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=94.83 E-value=0.052 Score=49.43 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=18.7
Q ss_pred eeEeecCCCCchhHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
..++.+|+|+|||.++-.++...
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~ 152 (282)
T 1rif_A 130 RRILNLPTSAGRSLIQALLARYY 152 (282)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEcCCCCCcHHHHHHHHHHH
Confidence 45779999999999987766654
No 434
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=94.82 E-value=0.2 Score=54.22 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=17.4
Q ss_pred CeeEeecCCCCchhHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILG 227 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la 227 (445)
.++++.+|+|+|||.++....
T Consensus 102 ~~vLV~apTGSGKTlva~lai 122 (1010)
T 2xgj_A 102 ESVLVSAHTSAGKTVVAEYAI 122 (1010)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHH
Confidence 479999999999999875433
No 435
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.79 E-value=0.015 Score=48.32 Aligned_cols=23 Identities=17% Similarity=0.171 Sum_probs=20.7
Q ss_pred CCeeEeecCCCCchhHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGR 228 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~ 228 (445)
..+++|.|+||+|||++|..+.+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999998876
No 436
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=94.78 E-value=0.058 Score=53.22 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.4
Q ss_pred CCCeeEeecCCCCchhHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVA 223 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A 223 (445)
.+.++++.+|+|+|||.++
T Consensus 130 ~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 130 PPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp SCCEEEEECCSSSSHHHHH
T ss_pred CCCcEEEEcCCCCchhHHH
Confidence 4578999999999999774
No 437
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.76 E-value=0.019 Score=57.91 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=31.0
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHHcC-CCCCCCeEEeecccc
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYMVG-ILPTDRVTEVQRTDL 249 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~~~-~~~~~~~~~~~~~~l 249 (445)
.+..|+|.|+||+||||+|+.|++.+...+ . +++.++...+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~----~~~~lD~D~i 436 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGR----SVSLLLGDTV 436 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSS----CEEEEEHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCc----eEEEECcHHH
Confidence 345688999999999999999999988532 2 5666665443
No 438
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=94.73 E-value=0.17 Score=54.61 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=18.8
Q ss_pred CeeEeecCCCCchhHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
..+++.+|+|+|||+++......+
T Consensus 55 ~~vlv~apTGsGKTlv~~~~i~~~ 78 (997)
T 4a4z_A 55 DSVFVAAHTSAGKTVVAEYAIAMA 78 (997)
T ss_dssp CEEEEECCTTSCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHHHH
Confidence 579999999999998765544444
No 439
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.70 E-value=0.027 Score=49.05 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=25.0
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHHcC
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYMVG 234 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~~~ 234 (445)
.-|+|.|++|+||||.++.+++.+...+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4688999999999999999999998754
No 440
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.69 E-value=0.12 Score=55.01 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=19.7
Q ss_pred CeeEeecCCCCchhHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
..++|.||.|+||||+.|.++..
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999654
No 441
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.67 E-value=0.014 Score=57.71 Aligned_cols=27 Identities=4% Similarity=-0.080 Sum_probs=24.5
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
...++|.|.+|+||||+|++|++.++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 457889999999999999999999975
No 442
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.63 E-value=0.014 Score=51.92 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=22.9
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
+..+.|.|++|+||||+++.|++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34688999999999999999999874
No 443
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.57 E-value=0.099 Score=45.45 Aligned_cols=44 Identities=32% Similarity=0.425 Sum_probs=26.2
Q ss_pred cEEEEcCccccccCCCCCCchhHHHHHHHHHhhccC-CcEEEEEecCchhHH
Q 013316 271 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMK 321 (445)
Q Consensus 271 ~il~lDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~i~a~~~~~~~ 321 (445)
.+|++||+|.+.... + ...+..++..+.. .++++..||-+....
T Consensus 152 ~~lViDEah~~~~~~------~-~~~l~~i~~~~~~~~~~l~~SAT~~~~~~ 196 (219)
T 1q0u_A 152 HILVVDEADLMLDMG------F-ITDVDQIAARMPKDLQMLVFSATIPEKLK 196 (219)
T ss_dssp CEEEECSHHHHHHTT------C-HHHHHHHHHTSCTTCEEEEEESCCCGGGH
T ss_pred eEEEEcCchHHhhhC------h-HHHHHHHHHhCCcccEEEEEecCCCHHHH
Confidence 789999999987521 1 1344556666654 345555565444443
No 444
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.53 E-value=0.023 Score=53.01 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=24.5
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
++..+.|.||+|+||||+++.|+..+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4556889999999999999999998865
No 445
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.50 E-value=0.026 Score=49.21 Aligned_cols=27 Identities=30% Similarity=0.191 Sum_probs=24.1
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
..-++|.|++|+||||.++.+++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 457889999999999999999998864
No 446
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.44 E-value=0.023 Score=52.66 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=23.0
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
.+.-+.|.||+|+||||+++.|+..+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344577999999999999999998875
No 447
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.44 E-value=0.021 Score=48.25 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.9
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
.-.+|+||.|+|||++.++|...+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3678999999999999999988764
No 448
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=94.33 E-value=0.2 Score=49.85 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=16.3
Q ss_pred CCeeEeecCCCCchhHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVAR 224 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~ 224 (445)
..++++.+|+|+|||.++-
T Consensus 158 ~~~~ll~apTGsGKT~~~~ 176 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFA 176 (508)
T ss_dssp CCCEEEECCSSTTSHHHHH
T ss_pred CCCEEEECCCCccHHHHHH
Confidence 4789999999999998753
No 449
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.31 E-value=0.032 Score=56.02 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=30.4
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 249 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~~~~~~~~~~~~~~~~l 249 (445)
+..++|.|+||+||||+|+.+++.+...+. ++..++...+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~----~~~~ld~D~i 411 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGR----KVTLLDGDVV 411 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEECHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCC----eEEEECchHh
Confidence 456889999999999999999998876442 4555554443
No 450
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.30 E-value=0.09 Score=50.51 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=15.7
Q ss_pred CeeEeecCCCCchhHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARI 225 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~ 225 (445)
.++++.+|+|+|||..+-.
T Consensus 75 ~~~lv~a~TGsGKT~~~~~ 93 (410)
T 2j0s_A 75 RDVIAQSQSGTGKTATFSI 93 (410)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CCEEEECCCCCCchHHHHH
Confidence 4699999999999976543
No 451
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.30 E-value=0.27 Score=51.54 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=21.3
Q ss_pred CeeEeecCCCCchhHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
..++|.||.|+||||+.|.++...
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 357899999999999999999865
No 452
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.29 E-value=0.016 Score=48.58 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=23.4
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
..+.|.||+|+||||+++.|...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 36789999999999999999999875
No 453
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=94.27 E-value=0.13 Score=49.31 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=15.6
Q ss_pred CeeEeecCCCCchhHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARI 225 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~ 225 (445)
..+++.+|+|+|||+.+-.
T Consensus 78 ~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CCEEECCCSCSSSHHHHHH
T ss_pred CCEEEECCCCCcccHHHHH
Confidence 4589999999999987533
No 454
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.24 E-value=0.15 Score=53.53 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=18.0
Q ss_pred CeeEeecCCCCchhHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGR 228 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~ 228 (445)
..+++.||+|+|||++...+..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999997666643
No 455
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.22 E-value=0.024 Score=49.16 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=21.0
Q ss_pred CeeEeecCCCCchhHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
..+.+.||+|+||||+.+.|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35778999999999999999988
No 456
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.16 E-value=0.049 Score=46.12 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.1
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
.....+++.|++|+|||++...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999988754
No 457
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.15 E-value=0.21 Score=47.49 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=16.9
Q ss_pred CeeEeecCCCCchhHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILG 227 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la 227 (445)
.++++.+|+|+|||..+-..+
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 579999999999998764443
No 458
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.14 E-value=0.27 Score=47.91 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=19.6
Q ss_pred eeEeecCCCCchhHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
++++..|+|+|||..+-.++...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 89999999999999887776554
No 459
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.10 E-value=0.0083 Score=54.24 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.8
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
.+..|+|.|++|+||||+|+.|++.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45578899999999999999999876
No 460
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.10 E-value=0.033 Score=48.38 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.4
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
.....++|.|++|+|||++...+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34668999999999999999998764
No 461
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.08 E-value=0.071 Score=50.46 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=25.5
Q ss_pred CCCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 203 ARRPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 203 ~~~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
......++|.||||+|||++++.|+..+..
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred ecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 345568999999999999999999988754
No 462
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.08 E-value=0.029 Score=57.50 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=20.0
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
...++.||||||||+++..+...+.
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999988776666553
No 463
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.04 E-value=0.019 Score=57.60 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=24.3
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
....+.|.|++|+||||+++.|+..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3456889999999999999999999864
No 464
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.01 E-value=0.03 Score=49.77 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=20.5
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
+..-++++|+||+|||++|-.++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3446889999999999999877654
No 465
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.95 E-value=0.2 Score=43.36 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=17.0
Q ss_pred eeEeecCCCCchhH-HHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTM-VARILGRLL 230 (445)
Q Consensus 208 ~vll~Gp~GtGKt~-~A~~la~~~ 230 (445)
-.+++||-|+|||+ +.+.+....
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~ 53 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGI 53 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 46689999999999 556654443
No 466
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.80 E-value=0.031 Score=49.52 Aligned_cols=25 Identities=28% Similarity=0.607 Sum_probs=21.3
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
....+.|.||+|+||||+.+.|+..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4456889999999999999999754
No 467
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.72 E-value=0.037 Score=49.16 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=22.3
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
.. ..+.+.||+|+||||+.+.|+..+
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 44 678899999999999999998764
No 468
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=93.71 E-value=0.077 Score=39.17 Aligned_cols=89 Identities=15% Similarity=0.080 Sum_probs=62.6
Q ss_pred CCCCHHHHHHHHHHHHhccccccccccc-ccCCcccHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHHhhhhhhccCC
Q 013316 341 NDFNSEELAKILHIKMNNQTEDSLLYGF-KLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDC 419 (445)
Q Consensus 341 ~~~~~~~~~~il~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~n~r~l~~~~~~~~~~~~~~~~~~~ 419 (445)
+.|+.+|-..|.+.||-..... ..|+ .-...++++++..++..|+ |.+| +|.|+..+...+|..+..+...
T Consensus 1 sGYt~~EK~~IAk~~LiPkql~--~~GL~~~~~~i~d~al~~iI~~YT----REaG-VRnLer~i~~i~RK~a~~i~~~- 72 (94)
T 1qzm_A 1 SGYTEDEKLNIAKRHLLPKQIE--RNALKKGELTVDDSAIIGIIRYYT----REAG-VRGLEREISKLCRKAVKQLLLD- 72 (94)
T ss_dssp CCCCHHHHHHHHHHTHHHHHHH--HTTCCTTTEEECHHHHHHHHHHHC----CCSS-SHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCHHHHHHHHHHhccHHHHH--HhCCChhhceECHHHHHHHHHHhc----cccc-chHHHHHHHHHHHHHHHHHHHc-
Confidence 4689999999999887653321 1222 1234678889999998887 6677 8999999999999888877531
Q ss_pred CChhhhhhccHHHHHHHHH
Q 013316 420 LDTDELRTITLEDLEAGLK 438 (445)
Q Consensus 420 ~~~~~~~~i~~~d~~~a~~ 438 (445)
+.....+|+.+++.+.+.
T Consensus 73 -~~~~~v~v~~~~l~~~LG 90 (94)
T 1qzm_A 73 -KSLKHIEINGDNLHDYLG 90 (94)
T ss_dssp -TTCCCEEECTTTTHHHHC
T ss_pred -CCCCCeeECHHHHHHHcC
Confidence 112345788888876653
No 469
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.67 E-value=0.043 Score=46.36 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=19.7
Q ss_pred CCeeEeecCCCCchhHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGR 228 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~ 228 (445)
...++|.|++|+|||++...+..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999987765
No 470
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=93.65 E-value=0.32 Score=43.19 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.2
Q ss_pred CeeEeecCCCCchhHHHH
Q 013316 207 PHMAFLGNPGTGKTMVAR 224 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~ 224 (445)
..+++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 469999999999997653
No 471
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.64 E-value=0.033 Score=52.56 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.3
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
...-+.|+||||+|||++++.++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34467899999999999999999875
No 472
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.63 E-value=0.035 Score=49.28 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.3
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
....+.|.||+|+||||+.+.|+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568899999999999999998765
No 473
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.60 E-value=0.033 Score=48.98 Aligned_cols=25 Identities=32% Similarity=0.636 Sum_probs=20.9
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
....+.|.||+|+||||+.+.|+..
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3446779999999999999999754
No 474
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.55 E-value=0.04 Score=49.96 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=21.1
Q ss_pred eeEeecCCCCchhHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
.+.|.||+|+||||+.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999876
No 475
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.54 E-value=0.074 Score=46.23 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.7
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
...++|.|++|+|||+++..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45789999999999999999988764
No 476
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.53 E-value=0.037 Score=47.10 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.3
Q ss_pred CeeEeecCCCCchhHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
..+.|.|++|+|||++.+.+...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36889999999999999999864
No 477
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=93.48 E-value=0.11 Score=51.77 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=19.4
Q ss_pred CeeEeecCCCCchhHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
..+++.||+|+|||.++-.++...
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~~ 152 (510)
T 2oca_A 129 RRRILNLPTSAGRSLIQALLARYY 152 (510)
T ss_dssp SEEEEECCSTTTHHHHHHHHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHH
Confidence 468999999999999986665543
No 478
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.47 E-value=0.09 Score=45.08 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=24.5
Q ss_pred eeEeecCCCCchhHHHHHHHHHHHHcCC
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLYMVGI 235 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~~~~~ 235 (445)
-|.|.|+.|+||||.++.|++.+...+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~ 29 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGK 29 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 3678999999999999999999987554
No 479
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.45 E-value=0.041 Score=47.04 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.4
Q ss_pred CeeEeecCCCCchhHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
..++|.||+|+|||++.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999864
No 480
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.44 E-value=0.038 Score=46.55 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=19.1
Q ss_pred eEeecCCCCchhHHHHHHHHH
Q 013316 209 MAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 209 vll~Gp~GtGKt~~A~~la~~ 229 (445)
++++|++|+|||++|+.++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999855
No 481
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.42 E-value=0.34 Score=50.50 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=21.3
Q ss_pred eeEeecCCCCchhHHHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
.++|.||.|+||||+.|.++....
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhhhh
Confidence 577999999999999999998753
No 482
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=93.40 E-value=0.14 Score=48.60 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=15.1
Q ss_pred CeeEeecCCCCchhHHHH
Q 013316 207 PHMAFLGNPGTGKTMVAR 224 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~ 224 (445)
.++++.+|+|+|||.++-
T Consensus 59 ~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCEEECCCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 468999999999997743
No 483
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=93.34 E-value=0.16 Score=49.31 Aligned_cols=21 Identities=29% Similarity=0.213 Sum_probs=17.0
Q ss_pred CeeEeecCCCCchhHHH-HHHH
Q 013316 207 PHMAFLGNPGTGKTMVA-RILG 227 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A-~~la 227 (445)
..+++.||+|+|||.++ ..+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 47999999999999976 4343
No 484
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.32 E-value=0.034 Score=52.88 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=22.8
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
...+.|.||+|+||||+++.|+..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999998764
No 485
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.32 E-value=0.034 Score=48.45 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.0
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
....+.|.||+|+||||+.+.|+..
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3446779999999999999999754
No 486
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.32 E-value=0.092 Score=49.08 Aligned_cols=29 Identities=14% Similarity=0.058 Sum_probs=24.3
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLLYM 232 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~~~ 232 (445)
.+..-+++.|+||+|||++|..++.....
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34456889999999999999999988765
No 487
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.32 E-value=0.042 Score=49.55 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=21.6
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
....+.|.||+|+||||+.+.|+..+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44467799999999999999997653
No 488
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.32 E-value=0.046 Score=51.56 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.3
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
....+.|.||+|+||||+.|.|+...
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34467899999999999999999865
No 489
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.31 E-value=0.048 Score=44.48 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.6
Q ss_pred eeEeecCCCCchhHHHHHHHHH
Q 013316 208 HMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 208 ~vll~Gp~GtGKt~~A~~la~~ 229 (445)
.+++.|++|+|||++...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998753
No 490
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.27 E-value=0.047 Score=57.43 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=20.1
Q ss_pred CeeEeecCCCCchhHHHHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
...++.||||||||+++..+...+.
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l~ 396 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHLA 396 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678999999999988777666554
No 491
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.25 E-value=0.04 Score=46.50 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.9
Q ss_pred CeeEeecCCCCchhHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGR 228 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~ 228 (445)
..+++.|++|+|||++.+.+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999876
No 492
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.23 E-value=0.039 Score=45.32 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.8
Q ss_pred CCeeEeecCCCCchhHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
...+++.|++|+|||++...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457999999999999999998753
No 493
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.17 E-value=0.049 Score=52.65 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=22.7
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
...+++.||+|+||||+.+++...+.
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 34578999999999999999998875
No 494
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.16 E-value=0.055 Score=48.94 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=21.9
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
.....+.|.||+|+||||+.+.|+..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34456889999999999999999864
No 495
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.11 E-value=0.047 Score=49.20 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=22.2
Q ss_pred CCCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 204 RRPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 204 ~~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
.....+.|.||+|+||||+.+.|+..+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 344567899999999999999997653
No 496
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.10 E-value=0.12 Score=47.55 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=24.1
Q ss_pred CCeeEeecCCCCchhHHHHHHHHHHHHc
Q 013316 206 PPHMAFLGNPGTGKTMVARILGRLLYMV 233 (445)
Q Consensus 206 ~~~vll~Gp~GtGKt~~A~~la~~~~~~ 233 (445)
+..+++.|++|+||||++..+|..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4567789999999999999999988653
No 497
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.06 E-value=0.038 Score=50.16 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=21.9
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLL 230 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~ 230 (445)
....+.|.||+|+||||+.+.|+..+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34467899999999999999998754
No 498
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.06 E-value=0.088 Score=45.92 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=22.9
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRLLY 231 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~~~ 231 (445)
....++|.|++|+|||+++..++....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 345788999999999999999987754
No 499
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.03 E-value=0.055 Score=48.38 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.4
Q ss_pred CCCeeEeecCCCCchhHHHHHHHHH
Q 013316 205 RPPHMAFLGNPGTGKTMVARILGRL 229 (445)
Q Consensus 205 ~~~~vll~Gp~GtGKt~~A~~la~~ 229 (445)
....+.|.||+|+||||+.+.|+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3446789999999999999999874
No 500
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.99 E-value=0.05 Score=44.93 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.6
Q ss_pred CeeEeecCCCCchhHHHHHHHH
Q 013316 207 PHMAFLGNPGTGKTMVARILGR 228 (445)
Q Consensus 207 ~~vll~Gp~GtGKt~~A~~la~ 228 (445)
..+++.|++|+|||++.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999974
Done!