Query 013317
Match_columns 445
No_of_seqs 171 out of 1485
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 02:37:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00081 enolase; Provisional 100.0 8.9E-97 2E-101 750.4 48.1 435 1-437 1-439 (439)
2 KOG2670 Enolase [Carbohydrate 100.0 5.3E-96 1E-100 683.8 37.8 429 1-441 1-433 (433)
3 COG0148 Eno Enolase [Carbohydr 100.0 1.2E-93 2.5E-98 689.5 43.0 417 1-438 1-419 (423)
4 PLN00191 enolase 100.0 6.8E-93 1.5E-97 724.3 47.5 431 1-441 25-455 (457)
5 PRK00077 eno enolase; Provisio 100.0 1.9E-90 4.2E-95 708.4 45.7 418 1-439 1-422 (425)
6 cd03313 enolase Enolase: Enola 100.0 1.3E-88 2.8E-93 691.5 44.0 405 6-426 1-408 (408)
7 TIGR01060 eno phosphopyruvate 100.0 4.6E-88 1E-92 690.8 44.5 419 4-439 1-423 (425)
8 PTZ00378 hypothetical protein; 100.0 6.7E-79 1.4E-83 613.3 44.4 404 2-435 49-486 (518)
9 PRK08350 hypothetical protein; 100.0 6.9E-71 1.5E-75 528.7 37.1 331 1-431 1-334 (341)
10 PF00113 Enolase_C: Enolase, C 100.0 1E-67 2.2E-72 509.8 26.9 293 149-441 3-295 (295)
11 TIGR01502 B_methylAsp_ase meth 100.0 2.7E-45 6E-50 370.1 34.5 331 19-427 50-405 (408)
12 PRK15072 bifunctional D-altron 100.0 7.2E-46 1.6E-50 379.0 29.1 310 2-398 1-332 (404)
13 cd03328 MR_like_3 Mandelate ra 100.0 2.2E-45 4.7E-50 369.2 27.2 292 3-399 1-306 (352)
14 cd03327 MR_like_2 Mandelate ra 100.0 1.6E-45 3.5E-50 368.9 26.2 293 3-399 1-293 (341)
15 cd03314 MAL Methylaspartate am 100.0 3.3E-44 7.2E-49 358.7 35.2 326 19-422 13-364 (369)
16 cd03322 rpsA The starvation se 100.0 9.7E-45 2.1E-49 365.8 28.8 288 3-397 1-290 (361)
17 cd03321 mandelate_racemase Man 100.0 7.9E-44 1.7E-48 358.7 33.0 296 2-399 1-308 (355)
18 cd03318 MLE Muconate Lactonizi 100.0 6.8E-44 1.5E-48 360.9 30.1 300 3-398 1-315 (365)
19 PRK14017 galactonate dehydrata 100.0 5.9E-44 1.3E-48 362.9 28.5 301 2-398 1-303 (382)
20 TIGR02534 mucon_cyclo muconate 100.0 1.4E-43 2.9E-48 358.8 30.8 289 18-402 27-316 (368)
21 cd03325 D-galactonate_dehydrat 100.0 2.3E-43 5E-48 354.8 28.6 297 3-398 1-302 (352)
22 cd03326 MR_like_1 Mandelate ra 100.0 2.1E-43 4.6E-48 357.4 26.0 283 18-399 26-334 (385)
23 cd03317 NAAAR N-acylamino acid 100.0 8.7E-43 1.9E-47 351.4 28.4 289 18-408 24-312 (354)
24 TIGR01928 menC_lowGC/arch o-su 100.0 1.1E-42 2.4E-47 345.9 28.2 287 18-408 21-307 (324)
25 PRK15440 L-rhamnonate dehydrat 100.0 5E-43 1.1E-47 355.2 25.5 276 19-399 57-332 (394)
26 cd03324 rTSbeta_L-fuconate_deh 100.0 8.3E-43 1.8E-47 355.8 26.7 290 3-382 2-352 (415)
27 cd03329 MR_like_4 Mandelate ra 100.0 1.3E-42 2.7E-47 351.6 27.7 295 3-399 1-312 (368)
28 cd03316 MR_like Mandelate race 100.0 3.3E-42 7.1E-47 347.8 26.5 306 3-399 1-316 (357)
29 cd03323 D-glucarate_dehydratas 100.0 1.6E-41 3.5E-46 345.3 29.4 311 3-398 1-337 (395)
30 COG4948 L-alanine-DL-glutamate 100.0 6.9E-42 1.5E-46 347.0 25.5 282 19-399 30-312 (372)
31 TIGR03247 glucar-dehydr glucar 100.0 9.1E-41 2E-45 342.6 28.1 312 3-398 5-354 (441)
32 cd03319 L-Ala-DL-Glu_epimerase 100.0 4.1E-39 8.8E-44 319.8 26.5 277 19-398 26-304 (316)
33 PRK15129 L-Ala-D/L-Glu epimera 100.0 1E-36 2.3E-41 302.7 25.8 263 18-396 27-289 (321)
34 cd03315 MLE_like Muconate lact 100.0 1.6E-34 3.5E-39 279.9 23.6 209 117-398 46-256 (265)
35 cd00308 enolase_like Enolase-s 100.0 1.8E-33 4E-38 266.8 23.0 175 117-398 45-221 (229)
36 cd03320 OSBS o-Succinylbenzoat 100.0 1.2E-33 2.5E-38 273.5 18.0 203 116-399 49-253 (263)
37 TIGR01927 menC_gamma/gm+ o-suc 100.0 8.2E-33 1.8E-37 272.8 20.7 258 18-399 21-283 (307)
38 PRK02714 O-succinylbenzoate sy 100.0 9.1E-32 2E-36 267.0 23.0 259 18-400 28-292 (320)
39 PLN02980 2-oxoglutarate decarb 100.0 1.4E-31 3E-36 312.6 27.3 303 1-398 930-1265(1655)
40 PRK05105 O-succinylbenzoate sy 100.0 3.9E-30 8.4E-35 255.4 23.9 252 18-398 27-283 (322)
41 PF03952 Enolase_N: Enolase, N 100.0 9.6E-30 2.1E-34 217.8 14.9 131 3-139 1-132 (132)
42 PRK02901 O-succinylbenzoate sy 99.9 6.8E-21 1.5E-25 188.7 15.4 135 225-398 120-257 (327)
43 COG3799 Mal Methylaspartate am 99.8 6.6E-18 1.4E-22 157.6 20.7 338 20-427 52-406 (410)
44 PF07476 MAAL_C: Methylasparta 99.8 7.8E-18 1.7E-22 152.1 18.7 186 223-427 47-246 (248)
45 PF02746 MR_MLE_N: Mandelate r 99.7 7.2E-17 1.6E-21 136.9 12.1 99 11-140 15-117 (117)
46 PF01188 MR_MLE: Mandelate rac 99.4 4E-12 8.6E-17 96.7 9.0 66 229-328 2-67 (67)
47 PF13378 MR_MLE_C: Enolase C-t 99.1 1.3E-10 2.9E-15 97.4 8.1 71 328-401 1-71 (111)
48 COG1441 MenC O-succinylbenzoat 99.0 7.2E-09 1.6E-13 94.5 11.9 139 228-406 146-289 (321)
49 PF05034 MAAL_N: Methylasparta 98.0 6.5E-05 1.4E-09 65.0 10.7 107 19-144 51-158 (159)
50 cd02932 OYE_YqiM_FMN Old yello 98.0 0.00012 2.5E-09 73.6 14.4 95 234-352 212-319 (336)
51 cd04733 OYE_like_2_FMN Old yel 97.8 0.00012 2.6E-09 73.5 10.9 95 234-352 207-321 (338)
52 cd02803 OYE_like_FMN_family Ol 97.2 0.0026 5.7E-08 63.5 10.9 95 234-352 199-310 (327)
53 cd02930 DCR_FMN 2,4-dienoyl-Co 97.2 0.00087 1.9E-08 67.8 7.1 72 277-352 219-305 (353)
54 cd02801 DUS_like_FMN Dihydrour 96.8 0.0046 9.9E-08 58.4 8.0 67 283-353 139-213 (231)
55 COG0821 gcpE 1-hydroxy-2-methy 93.1 0.37 7.9E-06 47.4 7.8 73 307-384 61-133 (361)
56 cd04734 OYE_like_3_FMN Old yel 92.2 1.8 3.9E-05 43.6 11.8 71 278-352 224-314 (343)
57 PRK00366 ispG 4-hydroxy-3-meth 91.9 0.52 1.1E-05 47.0 7.2 74 307-385 67-141 (360)
58 TIGR01182 eda Entner-Doudoroff 91.7 1.2 2.7E-05 41.3 9.2 108 280-404 18-126 (204)
59 TIGR00612 ispG_gcpE 1-hydroxy- 91.2 0.56 1.2E-05 46.4 6.5 73 308-385 60-132 (346)
60 cd00956 Transaldolase_FSA Tran 89.7 11 0.00024 35.2 13.7 117 280-406 62-185 (211)
61 PF04551 GcpE: GcpE protein; 89.5 0.7 1.5E-05 46.1 5.7 71 308-384 57-141 (359)
62 cd04747 OYE_like_5_FMN Old yel 88.6 4.1 8.8E-05 41.4 10.7 72 278-352 231-327 (361)
63 PF00478 IMPDH: IMP dehydrogen 88.2 3.9 8.5E-05 41.2 10.1 94 309-409 137-243 (352)
64 cd04735 OYE_like_4_FMN Old yel 87.1 3.4 7.3E-05 41.8 9.1 71 278-351 231-311 (353)
65 PRK07107 inosine 5-monophospha 86.8 9.5 0.00021 40.5 12.6 121 282-409 241-384 (502)
66 PRK13523 NADPH dehydrogenase N 86.3 4.1 9E-05 40.9 9.1 71 278-352 223-304 (337)
67 cd07940 DRE_TIM_IPMS 2-isoprop 85.8 28 0.00061 33.6 14.5 129 277-409 15-166 (268)
68 cd07939 DRE_TIM_NifV Streptomy 85.5 26 0.00057 33.6 14.1 129 277-410 15-163 (259)
69 cd04726 KGPDC_HPS 3-Keto-L-gul 85.0 25 0.00053 32.1 13.1 116 280-405 11-132 (202)
70 cd07944 DRE_TIM_HOA_like 4-hyd 85.0 39 0.00084 32.7 15.2 130 276-409 14-161 (266)
71 PRK10605 N-ethylmaleimide redu 84.5 12 0.00025 38.1 11.5 70 278-352 244-320 (362)
72 PF01207 Dus: Dihydrouridine s 84.5 3.1 6.7E-05 41.3 7.2 68 281-352 137-212 (309)
73 PRK06552 keto-hydroxyglutarate 84.2 8.3 0.00018 36.1 9.5 110 280-405 23-135 (213)
74 PRK10550 tRNA-dihydrouridine s 84.0 11 0.00024 37.4 10.8 69 283-355 149-226 (312)
75 PRK10415 tRNA-dihydrouridine s 83.9 8.7 0.00019 38.3 10.1 69 283-355 150-226 (321)
76 TIGR03128 RuMP_HxlA 3-hexulose 83.2 37 0.0008 31.1 14.5 118 280-406 10-133 (206)
77 COG0800 Eda 2-keto-3-deoxy-6-p 83.1 18 0.00039 33.7 11.0 91 280-382 23-114 (211)
78 PRK05718 keto-hydroxyglutarate 82.8 7.1 0.00015 36.5 8.4 109 280-405 25-134 (212)
79 cd02929 TMADH_HD_FMN Trimethyl 82.7 9.4 0.0002 38.9 10.0 40 310-352 279-318 (370)
80 PRK06015 keto-hydroxyglutarate 82.4 8.9 0.00019 35.5 8.8 108 280-404 14-122 (201)
81 PRK00694 4-hydroxy-3-methylbut 81.2 7.1 0.00015 41.5 8.5 73 309-385 72-169 (606)
82 PRK07114 keto-hydroxyglutarate 80.7 9.2 0.0002 36.0 8.4 92 280-382 25-120 (222)
83 TIGR02090 LEU1_arch isopropylm 80.4 56 0.0012 33.2 14.7 126 277-407 17-162 (363)
84 PRK08255 salicylyl-CoA 5-hydro 79.7 49 0.0011 37.2 15.2 72 277-352 633-716 (765)
85 cd02933 OYE_like_FMN Old yello 79.0 17 0.00037 36.5 10.3 69 279-352 238-313 (338)
86 PTZ00314 inosine-5'-monophosph 78.1 23 0.00049 37.6 11.4 117 285-409 243-376 (495)
87 COG1902 NemA NADH:flavin oxido 77.8 21 0.00045 36.3 10.5 72 277-352 232-317 (363)
88 cd02931 ER_like_FMN Enoate red 77.3 23 0.00049 36.3 10.8 72 277-352 247-334 (382)
89 PF00724 Oxidored_FMN: NADH:fl 77.3 10 0.00022 38.1 8.2 40 310-352 281-320 (341)
90 cd07941 DRE_TIM_LeuA3 Desulfob 76.6 74 0.0016 30.8 13.7 131 276-408 14-173 (273)
91 cd03174 DRE_TIM_metallolyase D 76.1 66 0.0014 30.5 13.2 126 277-407 14-167 (265)
92 PF01081 Aldolase: KDPG and KH 75.4 16 0.00034 33.7 8.1 108 280-404 18-126 (196)
93 cd02810 DHOD_DHPD_FMN Dihydroo 75.1 14 0.0003 36.0 8.3 43 309-353 230-272 (289)
94 TIGR01361 DAHP_synth_Bsub phos 75.0 29 0.00062 33.5 10.2 93 282-382 75-168 (260)
95 PRK00278 trpC indole-3-glycero 74.0 31 0.00068 33.2 10.3 100 297-406 87-187 (260)
96 PRK02048 4-hydroxy-3-methylbut 73.5 10 0.00022 40.6 7.1 73 309-385 68-165 (611)
97 KOG2550 IMP dehydrogenase/GMP 73.4 17 0.00037 37.1 8.3 96 306-408 277-385 (503)
98 PRK05096 guanosine 5'-monophos 73.3 30 0.00065 34.7 9.9 94 309-409 139-245 (346)
99 PRK07259 dihydroorotate dehydr 72.3 33 0.00072 33.6 10.3 44 308-355 222-265 (301)
100 PRK11815 tRNA-dihydrouridine s 71.8 59 0.0013 32.5 12.0 69 281-355 150-235 (333)
101 PRK08673 3-deoxy-7-phosphohept 71.3 47 0.001 33.4 11.0 93 282-382 143-236 (335)
102 TIGR01769 GGGP geranylgeranylg 71.2 28 0.00061 32.3 8.8 68 279-352 131-204 (205)
103 PRK13396 3-deoxy-7-phosphohept 70.8 37 0.0008 34.3 10.1 97 277-382 147-244 (352)
104 cd00452 KDPG_aldolase KDPG and 70.6 34 0.00073 31.1 9.2 109 280-405 14-123 (190)
105 COG0434 SgcQ Predicted TIM-bar 70.1 55 0.0012 31.1 10.3 119 302-420 125-256 (263)
106 cd07945 DRE_TIM_CMS Leptospira 70.1 1E+02 0.0022 30.1 12.9 127 277-407 14-168 (280)
107 PLN02321 2-isopropylmalate syn 69.9 1E+02 0.0022 33.9 13.9 128 277-407 103-261 (632)
108 cd07943 DRE_TIM_HOA 4-hydroxy- 69.8 1.1E+02 0.0023 29.4 15.2 128 277-409 17-164 (263)
109 TIGR00736 nifR3_rel_arch TIM-b 69.8 45 0.00097 31.6 10.0 65 284-352 150-219 (231)
110 cd02911 arch_FMN Archeal FMN-b 68.9 45 0.00098 31.6 9.9 64 283-353 153-220 (233)
111 PLN02925 4-hydroxy-3-methylbut 68.8 15 0.00034 40.0 7.3 74 308-385 136-234 (733)
112 PRK13398 3-deoxy-7-phosphohept 68.1 83 0.0018 30.5 11.7 93 282-382 77-170 (266)
113 PLN02746 hydroxymethylglutaryl 68.0 1.3E+02 0.0027 30.5 13.3 125 277-408 63-219 (347)
114 PRK09140 2-dehydro-3-deoxy-6-p 65.0 80 0.0017 29.3 10.6 110 280-405 20-130 (206)
115 PRK06852 aldolase; Validated 64.2 35 0.00075 33.8 8.3 71 338-408 121-210 (304)
116 TIGR01037 pyrD_sub1_fam dihydr 64.1 43 0.00094 32.7 9.2 40 310-353 224-263 (300)
117 PRK12595 bifunctional 3-deoxy- 63.9 69 0.0015 32.5 10.7 96 277-381 164-260 (360)
118 PF00682 HMGL-like: HMGL-like 63.5 62 0.0013 30.3 9.8 141 278-422 10-173 (237)
119 PF01729 QRPTase_C: Quinolinat 63.4 44 0.00096 30.0 8.2 87 310-407 68-156 (169)
120 TIGR00735 hisF imidazoleglycer 63.2 16 0.00034 35.1 5.7 90 283-377 156-253 (254)
121 cd00739 DHPS DHPS subgroup of 63.1 1.1E+02 0.0024 29.4 11.5 95 278-384 20-130 (257)
122 KOG2335 tRNA-dihydrouridine sy 63.1 95 0.0021 31.3 11.0 68 282-352 155-232 (358)
123 COG0106 HisA Phosphoribosylfor 62.9 1.2E+02 0.0026 28.9 11.3 119 229-368 111-239 (241)
124 PRK13397 3-deoxy-7-phosphohept 62.8 75 0.0016 30.5 10.1 95 278-381 62-157 (250)
125 PRK11858 aksA trans-homoaconit 62.8 1.8E+02 0.004 29.6 14.6 126 277-407 21-166 (378)
126 PRK11613 folP dihydropteroate 62.6 62 0.0013 31.7 9.7 106 249-383 21-142 (282)
127 COG0352 ThiE Thiamine monophos 62.5 93 0.002 29.1 10.4 108 323-443 8-139 (211)
128 TIGR02660 nifV_homocitr homoci 62.4 1.8E+02 0.0039 29.4 14.5 126 277-407 18-163 (365)
129 cd04738 DHOD_2_like Dihydrooro 61.5 40 0.00088 33.6 8.5 43 309-353 267-309 (327)
130 TIGR01302 IMP_dehydrog inosine 60.9 44 0.00095 35.0 8.9 93 309-408 253-358 (450)
131 cd00331 IGPS Indole-3-glycerol 59.7 1.5E+02 0.0031 27.4 12.2 72 305-381 57-128 (217)
132 cd04740 DHOD_1B_like Dihydroor 58.1 92 0.002 30.3 10.3 56 308-367 219-274 (296)
133 TIGR01303 IMP_DH_rel_1 IMP deh 57.8 92 0.002 32.9 10.6 94 309-409 254-360 (475)
134 TIGR01305 GMP_reduct_1 guanosi 57.2 75 0.0016 31.9 9.2 94 309-409 138-244 (343)
135 PRK00915 2-isopropylmalate syn 56.9 2.7E+02 0.0059 29.7 14.7 127 277-407 21-170 (513)
136 PRK07998 gatY putative fructos 56.2 2.1E+02 0.0045 28.1 12.1 66 312-382 66-138 (283)
137 PRK01033 imidazole glycerol ph 55.9 1.7E+02 0.0037 28.0 11.5 47 303-352 179-225 (258)
138 PRK07807 inosine 5-monophospha 55.5 89 0.0019 33.1 10.1 93 309-408 256-361 (479)
139 PRK13957 indole-3-glycerol-pho 55.3 2E+02 0.0043 27.6 11.7 96 277-381 59-158 (247)
140 cd03332 LMO_FMN L-Lactate 2-mo 54.2 1.2E+02 0.0027 31.0 10.6 93 307-407 240-338 (383)
141 PRK05692 hydroxymethylglutaryl 53.9 2.2E+02 0.0048 27.8 13.3 124 277-407 21-176 (287)
142 TIGR00742 yjbN tRNA dihydrouri 53.7 1.4E+02 0.0029 29.8 10.6 67 282-354 141-224 (318)
143 TIGR00973 leuA_bact 2-isopropy 53.6 3E+02 0.0065 29.2 14.4 127 277-407 18-167 (494)
144 TIGR01304 IMP_DH_rel_2 IMP deh 53.6 2.6E+02 0.0057 28.5 14.3 40 307-351 175-214 (369)
145 PRK06843 inosine 5-monophospha 52.5 2.8E+02 0.006 28.7 12.8 95 308-409 181-288 (404)
146 KOG2367 Alpha-isopropylmalate 52.3 3.1E+02 0.0067 28.9 13.6 119 275-396 72-211 (560)
147 cd04824 eu_ALAD_PBGS_cysteine_ 52.1 99 0.0021 30.6 9.0 108 226-348 165-288 (320)
148 COG0119 LeuA Isopropylmalate/h 52.0 2E+02 0.0043 29.8 11.8 130 276-408 18-168 (409)
149 PRK05567 inosine 5'-monophosph 51.3 77 0.0017 33.5 8.9 108 295-409 241-363 (486)
150 TIGR03217 4OH_2_O_val_ald 4-hy 51.0 2.7E+02 0.0058 27.9 15.9 126 277-407 19-164 (333)
151 TIGR03572 WbuZ glycosyl amidat 51.0 1.7E+02 0.0037 27.3 10.5 43 307-352 184-226 (232)
152 PRK07428 nicotinate-nucleotide 50.2 1.4E+02 0.003 29.3 9.9 90 309-409 183-274 (288)
153 COG0113 HemB Delta-aminolevuli 49.5 1.2E+02 0.0027 29.8 9.0 107 226-348 174-295 (330)
154 cd00384 ALAD_PBGS Porphobilino 49.2 1.1E+02 0.0023 30.3 8.7 107 226-348 161-282 (314)
155 PRK02083 imidazole glycerol ph 49.2 36 0.00077 32.5 5.6 66 308-377 185-251 (253)
156 PLN02617 imidazole glycerol ph 48.5 2.3E+02 0.0049 30.5 11.9 64 308-377 470-536 (538)
157 PF00490 ALAD: Delta-aminolevu 48.5 1.4E+02 0.003 29.7 9.3 107 226-348 171-292 (324)
158 PRK09283 delta-aminolevulinic 47.9 92 0.002 30.9 8.1 130 226-381 169-313 (323)
159 PRK08185 hypothetical protein; 47.4 2.1E+02 0.0045 28.0 10.6 73 331-405 147-227 (283)
160 cd04736 MDH_FMN Mandelate dehy 46.8 2E+02 0.0044 29.2 10.6 107 308-424 224-343 (361)
161 PRK08649 inosine 5-monophospha 46.6 1.7E+02 0.0038 29.7 10.3 94 308-409 175-288 (368)
162 COG1167 ARO8 Transcriptional r 46.6 88 0.0019 32.8 8.5 93 282-378 165-264 (459)
163 cd04823 ALAD_PBGS_aspartate_ri 46.5 1.3E+02 0.0029 29.8 8.9 107 226-348 166-287 (320)
164 PLN02493 probable peroxisomal 46.5 2.2E+02 0.0047 29.1 10.8 93 307-407 211-309 (367)
165 COG0042 tRNA-dihydrouridine sy 46.3 40 0.00087 33.6 5.6 47 307-355 184-230 (323)
166 COG2088 SpoVG Uncharacterized 46.2 39 0.00085 26.7 4.2 28 2-30 1-28 (95)
167 PLN02979 glycolate oxidase 45.5 2.9E+02 0.0062 28.2 11.4 94 306-407 209-308 (366)
168 cd07948 DRE_TIM_HCS Saccharomy 44.8 2.9E+02 0.0064 26.5 13.3 127 276-407 16-162 (262)
169 PRK12344 putative alpha-isopro 44.8 4.2E+02 0.0092 28.4 14.7 129 277-407 22-179 (524)
170 TIGR00977 LeuA_rel 2-isopropyl 44.7 3.9E+02 0.0086 28.6 13.0 130 276-407 17-175 (526)
171 cd04732 HisA HisA. Phosphorib 43.6 2.7E+02 0.0058 25.8 11.0 44 305-352 175-218 (234)
172 cd00288 Pyruvate_Kinase Pyruva 43.6 3E+02 0.0064 29.2 11.7 142 279-425 172-337 (480)
173 PF00218 IGPS: Indole-3-glycer 43.5 1.7E+02 0.0037 28.1 9.2 98 278-381 67-165 (254)
174 PRK07896 nicotinate-nucleotide 43.1 1.9E+02 0.0041 28.4 9.5 91 309-409 187-277 (289)
175 PF01070 FMN_dh: FMN-dependent 42.9 97 0.0021 31.4 7.8 92 307-408 212-311 (356)
176 PRK08227 autoinducer 2 aldolas 42.9 1.2E+02 0.0027 29.3 8.1 63 346-408 107-180 (264)
177 COG1453 Predicted oxidoreducta 42.8 3.3E+02 0.0071 27.8 11.1 94 280-379 91-201 (391)
178 PF01408 GFO_IDH_MocA: Oxidore 41.8 1.9E+02 0.004 23.4 9.9 77 292-381 43-120 (120)
179 PRK14024 phosphoribosyl isomer 41.7 2.8E+02 0.006 26.2 10.4 49 302-353 172-222 (241)
180 cd00381 IMPDH IMPDH: The catal 41.6 3.7E+02 0.008 26.8 12.1 113 287-407 98-227 (325)
181 PLN02535 glycolate oxidase 41.1 2.2E+02 0.0047 29.0 9.9 94 307-408 210-309 (364)
182 COG1954 GlpP Glycerol-3-phosph 40.5 91 0.002 28.1 6.2 56 290-349 115-170 (181)
183 PRK13384 delta-aminolevulinic 40.5 1.5E+02 0.0033 29.3 8.3 107 226-348 171-291 (322)
184 TIGR01362 KDO8P_synth 3-deoxy- 40.1 1.3E+02 0.0028 28.9 7.6 97 278-382 55-152 (258)
185 PRK08195 4-hyroxy-2-oxovalerat 39.2 4.1E+02 0.0089 26.6 16.1 127 276-407 19-165 (337)
186 cd00947 TBP_aldolase_IIB Tagat 39.1 1.2E+02 0.0027 29.5 7.6 64 313-381 62-132 (276)
187 TIGR03586 PseI pseudaminic aci 38.6 1.5E+02 0.0032 29.7 8.2 35 280-315 75-109 (327)
188 PRK00748 1-(5-phosphoribosyl)- 38.2 62 0.0013 30.2 5.3 43 307-352 177-219 (233)
189 PRK05458 guanosine 5'-monophos 37.9 2.7E+02 0.0058 27.9 9.8 89 312-409 131-233 (326)
190 TIGR03569 NeuB_NnaB N-acetylne 36.9 1.3E+02 0.0029 30.1 7.5 88 279-375 73-160 (329)
191 PRK11197 lldD L-lactate dehydr 36.7 2.7E+02 0.0059 28.5 9.8 91 308-408 233-331 (381)
192 cd07937 DRE_TIM_PC_TC_5S Pyruv 36.6 4E+02 0.0087 25.7 14.1 128 278-409 17-172 (275)
193 PRK06096 molybdenum transport 36.6 3.1E+02 0.0066 26.9 9.8 90 310-409 178-267 (284)
194 PRK05848 nicotinate-nucleotide 36.4 2.8E+02 0.006 27.0 9.5 90 309-409 169-260 (273)
195 PRK09250 fructose-bisphosphate 36.3 1.9E+02 0.0042 29.1 8.5 75 338-413 152-244 (348)
196 PRK05198 2-dehydro-3-deoxyphos 36.1 1.6E+02 0.0036 28.4 7.6 98 277-382 62-160 (264)
197 TIGR01334 modD putative molybd 35.7 3.1E+02 0.0068 26.7 9.7 90 310-409 177-266 (277)
198 TIGR01306 GMP_reduct_2 guanosi 35.6 2.9E+02 0.0062 27.6 9.6 116 286-409 97-230 (321)
199 cd04729 NanE N-acetylmannosami 35.4 3.6E+02 0.0078 24.8 10.4 111 282-405 27-149 (219)
200 PRK01130 N-acetylmannosamine-6 34.9 3.5E+02 0.0077 24.9 9.8 112 280-405 21-145 (221)
201 PRK06106 nicotinate-nucleotide 34.9 2.2E+02 0.0048 27.8 8.5 90 309-410 181-270 (281)
202 PF02310 B12-binding: B12 bind 34.2 2.5E+02 0.0055 22.7 8.1 48 335-382 40-89 (121)
203 TIGR01496 DHPS dihydropteroate 34.0 3.1E+02 0.0068 26.3 9.4 52 323-383 76-127 (257)
204 TIGR02708 L_lactate_ox L-lacta 33.8 5.2E+02 0.011 26.4 11.3 95 306-408 214-314 (367)
205 PLN03228 methylthioalkylmalate 33.7 6.1E+02 0.013 27.0 12.8 129 276-407 100-260 (503)
206 PRK13398 3-deoxy-7-phosphohept 33.5 4.5E+02 0.0098 25.4 11.3 92 304-401 119-226 (266)
207 PRK07028 bifunctional hexulose 33.3 4.2E+02 0.0091 27.4 11.0 121 280-406 14-138 (430)
208 PRK05286 dihydroorotate dehydr 33.0 1.1E+02 0.0023 30.9 6.3 44 309-354 276-319 (344)
209 cd04732 HisA HisA. Phosphorib 32.7 2E+02 0.0044 26.6 7.9 92 323-415 98-206 (234)
210 cd06660 Aldo_ket_red Aldo-keto 32.4 4.4E+02 0.0096 25.0 10.4 82 295-381 111-199 (285)
211 PRK13307 bifunctional formalde 32.3 5.8E+02 0.012 26.3 12.4 110 280-394 183-296 (391)
212 PLN03033 2-dehydro-3-deoxyphos 32.2 2.1E+02 0.0045 28.1 7.6 96 278-381 69-165 (290)
213 cd04731 HisF The cyclase subun 32.1 1.3E+02 0.0029 28.2 6.6 61 307-374 58-118 (243)
214 PRK13802 bifunctional indole-3 31.8 5.2E+02 0.011 28.8 11.7 98 278-381 69-167 (695)
215 PRK06801 hypothetical protein; 31.8 2.2E+02 0.0048 27.9 8.0 62 315-381 69-137 (286)
216 PF02581 TMP-TENI: Thiamine mo 31.7 3.7E+02 0.0081 23.9 9.6 98 335-444 15-131 (180)
217 COG0134 TrpC Indole-3-glycerol 31.7 2.9E+02 0.0062 26.6 8.5 95 278-381 65-163 (254)
218 PRK08247 cystathionine gamma-s 31.7 5.4E+02 0.012 25.8 11.3 93 284-382 79-174 (366)
219 PF04131 NanE: Putative N-acet 31.6 1.3E+02 0.0029 27.5 6.0 70 309-381 21-99 (192)
220 COG1105 FruK Fructose-1-phosph 31.6 4.1E+02 0.0088 26.4 9.8 92 282-382 117-222 (310)
221 TIGR00737 nifR3_yhdG putative 31.1 78 0.0017 31.3 4.9 43 307-352 179-221 (319)
222 cd04737 LOX_like_FMN L-Lactate 31.0 5.3E+02 0.012 26.1 10.8 92 308-407 209-306 (351)
223 PRK13587 1-(5-phosphoribosyl)- 30.7 4.6E+02 0.01 24.7 11.6 99 230-351 113-219 (234)
224 PRK13399 fructose-1,6-bisphosp 30.7 2E+02 0.0042 29.1 7.5 52 323-377 78-139 (347)
225 PRK06559 nicotinate-nucleotide 30.6 3.5E+02 0.0076 26.6 9.1 89 310-410 185-273 (290)
226 COG0157 NadC Nicotinate-nucleo 30.3 3.8E+02 0.0082 26.2 9.1 94 310-413 176-269 (280)
227 PRK13753 dihydropteroate synth 30.1 4.1E+02 0.009 25.9 9.5 91 278-383 21-128 (279)
228 PRK09427 bifunctional indole-3 29.5 3.6E+02 0.0077 28.4 9.6 97 278-381 69-166 (454)
229 PRK06176 cystathionine gamma-s 29.4 3.6E+02 0.0077 27.4 9.5 89 289-382 82-172 (380)
230 PRK09389 (R)-citramalate synth 29.0 7.2E+02 0.016 26.3 14.3 126 277-407 19-164 (488)
231 TIGR03392 FeS_syn_CsdA cystein 28.9 3.7E+02 0.008 27.1 9.6 87 294-381 105-194 (398)
232 COG2089 SpsE Sialic acid synth 28.9 5.7E+02 0.012 25.6 10.1 80 288-376 95-175 (347)
233 COG0520 csdA Selenocysteine ly 28.7 2.1E+02 0.0046 29.5 7.7 74 306-381 122-199 (405)
234 PRK09195 gatY tagatose-bisphos 28.2 2.5E+02 0.0055 27.5 7.7 66 312-382 66-138 (284)
235 cd00954 NAL N-Acetylneuraminic 28.2 5.5E+02 0.012 24.8 10.3 123 225-381 53-188 (288)
236 KOG0538 Glycolate oxidase [Ene 28.1 6.1E+02 0.013 25.3 10.5 114 305-427 208-335 (363)
237 PRK10867 signal recognition pa 28.0 2.5E+02 0.0054 29.3 8.1 133 295-435 130-274 (433)
238 PLN02460 indole-3-glycerol-pho 27.8 4.5E+02 0.0098 26.5 9.5 98 278-381 138-237 (338)
239 COG0403 GcvP Glycine cleavage 27.7 1.2E+02 0.0026 31.4 5.5 123 281-409 149-283 (450)
240 PRK12737 gatY tagatose-bisphos 27.6 2.6E+02 0.0056 27.4 7.7 66 309-377 63-131 (284)
241 PF00128 Alpha-amylase: Alpha 27.5 79 0.0017 30.2 4.2 33 346-379 38-70 (316)
242 PF01116 F_bP_aldolase: Fructo 27.2 2.2E+02 0.0047 27.9 7.1 66 311-381 64-136 (287)
243 PF04131 NanE: Putative N-acet 27.2 95 0.0021 28.5 4.2 41 307-351 132-172 (192)
244 TIGR02129 hisA_euk phosphoribo 26.1 6E+02 0.013 24.4 10.5 110 231-351 117-231 (253)
245 TIGR01303 IMP_DH_rel_1 IMP deh 25.8 1.4E+02 0.003 31.6 5.8 75 335-415 227-303 (475)
246 PRK06739 pyruvate kinase; Vali 25.4 7.2E+02 0.016 25.2 11.1 149 279-431 163-335 (352)
247 cd04731 HisF The cyclase subun 25.3 1.3E+02 0.0028 28.3 5.2 44 307-353 180-223 (243)
248 PLN02274 inosine-5'-monophosph 25.0 4.8E+02 0.01 27.8 9.7 116 285-408 250-382 (505)
249 COG1103 Archaea-specific pyrid 25.0 37 0.00081 33.0 1.2 53 355-407 167-224 (382)
250 PTZ00066 pyruvate kinase; Prov 24.9 4.1E+02 0.0089 28.4 9.0 124 279-405 207-348 (513)
251 PRK07709 fructose-bisphosphate 24.6 3.7E+02 0.008 26.3 8.1 68 309-377 64-134 (285)
252 PRK06512 thiamine-phosphate py 24.4 2E+02 0.0043 27.0 6.0 46 336-381 30-78 (221)
253 PRK04169 geranylgeranylglycery 24.4 6.1E+02 0.013 24.0 9.4 69 278-352 136-212 (232)
254 PRK06543 nicotinate-nucleotide 24.3 4.5E+02 0.0098 25.7 8.6 90 310-411 181-270 (281)
255 PRK10874 cysteine sulfinate de 24.0 4.8E+02 0.01 26.3 9.4 99 282-381 91-197 (401)
256 PRK08508 biotin synthase; Prov 23.9 6.6E+02 0.014 24.2 11.1 105 279-389 40-167 (279)
257 PRK12457 2-dehydro-3-deoxyphos 23.8 3.3E+02 0.0072 26.6 7.5 96 278-381 69-165 (281)
258 cd00405 PRAI Phosphoribosylant 23.6 3.4E+02 0.0074 24.6 7.5 80 333-418 7-92 (203)
259 PRK13585 1-(5-phosphoribosyl)- 23.6 6E+02 0.013 23.6 12.1 44 305-352 178-221 (241)
260 COG1830 FbaB DhnA-type fructos 23.6 2.4E+02 0.0052 27.3 6.4 53 360-412 129-192 (265)
261 cd02812 PcrB_like PcrB_like pr 23.5 5.3E+02 0.011 24.2 8.6 70 278-353 131-204 (219)
262 TIGR01858 tag_bisphos_ald clas 23.2 3.6E+02 0.0078 26.4 7.7 66 311-381 63-135 (282)
263 COG0673 MviM Predicted dehydro 23.0 2.3E+02 0.005 27.8 6.6 47 335-383 81-127 (342)
264 PF00224 PK: Pyruvate kinase, 22.9 7.8E+02 0.017 24.7 10.7 145 278-426 173-340 (348)
265 cd08183 Fe-ADH2 Iron-containin 22.8 4.5E+02 0.0097 26.6 8.8 61 321-382 23-83 (374)
266 PF03102 NeuB: NeuB family; I 22.8 3.5E+02 0.0075 25.8 7.4 36 279-315 53-88 (241)
267 PF00977 His_biosynth: Histidi 22.8 5.1E+02 0.011 24.2 8.6 99 231-351 111-218 (229)
268 PF03932 CutC: CutC family; I 22.8 1.6E+02 0.0035 27.2 5.0 81 329-409 4-95 (201)
269 PRK05826 pyruvate kinase; Prov 22.7 4.3E+02 0.0092 27.9 8.7 123 279-406 171-313 (465)
270 PRK13259 regulatory protein Sp 22.6 1.5E+02 0.0034 23.8 4.2 27 2-29 1-27 (94)
271 PRK12738 kbaY tagatose-bisphos 22.6 3.1E+02 0.0068 26.8 7.2 65 312-381 66-137 (286)
272 PRK08610 fructose-bisphosphate 22.6 4.1E+02 0.0089 26.0 8.0 68 309-377 64-134 (286)
273 PRK09197 fructose-bisphosphate 22.5 3.3E+02 0.0072 27.5 7.5 66 312-381 84-168 (350)
274 smart00642 Aamy Alpha-amylase 22.5 83 0.0018 28.0 3.0 31 348-379 58-88 (166)
275 COG0107 HisF Imidazoleglycerol 22.5 1.4E+02 0.003 28.4 4.4 135 230-377 111-253 (256)
276 PTZ00300 pyruvate kinase; Prov 22.3 4.4E+02 0.0095 27.7 8.6 140 279-422 145-307 (454)
277 PLN02623 pyruvate kinase 22.2 5E+02 0.011 28.2 9.1 140 278-422 275-438 (581)
278 PRK13125 trpA tryptophan synth 22.2 6.6E+02 0.014 23.6 10.1 75 311-389 65-143 (244)
279 PF04026 SpoVG: SpoVG; InterP 22.0 1.3E+02 0.0028 23.7 3.6 28 2-30 1-28 (84)
280 PRK08185 hypothetical protein; 21.9 4E+02 0.0087 26.1 7.8 61 312-377 60-125 (283)
281 PRK00748 1-(5-phosphoribosyl)- 21.9 2.9E+02 0.0064 25.5 6.8 106 308-415 85-206 (233)
282 TIGR00262 trpA tryptophan synt 21.4 7.2E+02 0.016 23.7 10.9 104 280-393 22-158 (256)
283 PF07994 NAD_binding_5: Myo-in 21.3 1.2E+02 0.0026 29.8 4.1 60 295-377 199-259 (295)
284 PRK09206 pyruvate kinase; Prov 21.1 5.4E+02 0.012 27.2 9.0 141 279-423 170-334 (470)
285 PRK08960 hypothetical protein; 21.1 3.4E+02 0.0074 27.3 7.6 99 282-381 102-205 (387)
286 cd02067 B12-binding B12 bindin 21.0 3.3E+02 0.0071 22.2 6.2 49 334-382 38-89 (119)
287 TIGR01306 GMP_reduct_2 guanosi 20.6 8.5E+02 0.019 24.3 11.4 109 289-406 51-165 (321)
288 PRK14725 pyruvate kinase; Prov 20.6 9.2E+02 0.02 26.4 10.7 142 278-422 429-591 (608)
289 PRK12756 phospho-2-dehydro-3-d 20.6 2.9E+02 0.0062 27.9 6.5 34 216-253 234-267 (348)
290 PLN02446 (5-phosphoribosyl)-5- 20.6 7.8E+02 0.017 23.8 10.9 102 229-345 122-229 (262)
291 TIGR00167 cbbA ketose-bisphosp 20.5 4.5E+02 0.0097 25.8 7.9 66 309-377 64-134 (288)
292 PRK14114 1-(5-phosphoribosyl)- 20.5 7.3E+02 0.016 23.5 10.2 91 243-352 120-222 (241)
293 PRK09016 quinolinate phosphori 20.5 5.7E+02 0.012 25.2 8.5 91 309-412 196-286 (296)
294 COG0541 Ffh Signal recognition 20.4 6.8E+02 0.015 26.2 9.3 100 280-384 116-225 (451)
295 PRK07094 biotin synthase; Prov 20.4 8.1E+02 0.018 23.9 12.6 106 279-390 70-197 (323)
296 PRK01033 imidazole glycerol ph 20.2 7.5E+02 0.016 23.5 11.2 122 308-438 85-229 (258)
297 PRK05458 guanosine 5'-monophos 20.2 7.1E+02 0.015 24.9 9.3 108 289-407 54-169 (326)
298 PLN02656 tyrosine transaminase 20.1 4.7E+02 0.01 26.6 8.4 99 282-381 106-209 (409)
299 COG3707 AmiR Response regulato 20.1 6.2E+02 0.014 23.3 8.0 69 294-367 52-120 (194)
300 TIGR02080 O_succ_thio_ly O-suc 20.1 6.4E+02 0.014 25.6 9.3 96 282-382 76-174 (382)
301 PRK11572 copper homeostasis pr 20.0 1.4E+02 0.003 28.7 4.0 96 329-424 5-113 (248)
No 1
>PTZ00081 enolase; Provisional
Probab=100.00 E-value=8.9e-97 Score=750.42 Aligned_cols=435 Identities=71% Similarity=1.124 Sum_probs=411.4
Q ss_pred CcceeEEEEEEEecCCCCCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcc-cCCccHHHHHHHHHHhHhhhcc
Q 013317 1 MVTINAVKARQIFDSRGNPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWD-YHGRGVLKAVQNVNSIIGPALV 79 (445)
Q Consensus 1 ~~~I~~v~~~~i~~~~g~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~-y~~~~~~~a~~~i~~~l~p~Li 79 (445)
||+|++|++|+|+||+|+|||+|+|+|++|++ ++++|+|+|||.+|+.+++|+++. |.|+++.+++..+++.|+|.|+
T Consensus 1 ~~~I~~v~~r~i~dSrg~ptvev~v~~~~G~~-~a~~psgastG~~Ea~elrd~~~~~y~g~gv~~Av~~v~~~i~~~Li 79 (439)
T PTZ00081 1 MSTIKSIKAREILDSRGNPTVEVDLTTEKGVF-RAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVENVNEIIAPALI 79 (439)
T ss_pred CcEEEEEEEEEEecCCCCceEEEEEEECCCCE-EEecccCCCCceeeEeeccCCCccccCCccHHHHHHHHHHHHHHHHc
Confidence 89999999999999999999999999999977 999999999999999999998865 9999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHh-hccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCC--CcceeeeeeEE
Q 013317 80 GKDPTEQTQIDNFMVQQ-LDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGN--KTLVLPVPAFN 156 (445)
Q Consensus 80 G~d~~~~~~i~~~l~~~-l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~--~~~~ip~p~~~ 156 (445)
|+|+.+|+.||+.|. . +++++|.|+|+++.+|.||+.|||||+|++.|+.+|+|||+||+++.|. .+..+|+|+++
T Consensus 80 G~d~~dq~~iD~~l~-~~ldgt~n~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy~yL~~~~g~~~~~~~lP~P~~n 158 (439)
T PTZ00081 80 GKDVTDQKKLDKLMV-EQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGVPLYKYLAQLAGKPTDKFVLPVPCFN 158 (439)
T ss_pred CCChhhHHHHHHHHH-HhccCCcccccccccccchHHHHHHHHHHHHHHHHHcCCcHHHHHHHhcCCccCCccccceeEE
Confidence 999999999999999 7 9999988999999999999999999999999999999999999654475 34579999999
Q ss_pred eecCCccCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHH
Q 013317 157 VINGGSHADNKLAMQEFMILPIGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAI 236 (445)
Q Consensus 157 ~~~gg~~~~~~~~~~e~~~~p~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai 236 (445)
+++||+|+++++++||||++|.++.++.|+++++.++|+.+|+.++.|+|.....++++|+|.|+++++++.|+.+++|+
T Consensus 159 iinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~~~vgdeGgfap~~~~~eeal~ll~eAi 238 (439)
T PTZ00081 159 VINGGKHAGNKLAFQEFMIAPVGAPSFKEALRMGAEVYHSLKSVIKKKYGLDATNVGDEGGFAPNIKDPEEALDLLVEAI 238 (439)
T ss_pred eccCcccccccccceEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCcCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988777889999999999999999999999999
Q ss_pred HhcCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHH
Q 013317 237 AKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELT 316 (445)
Q Consensus 237 ~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~ 316 (445)
+++||++++.|++|+++++||+.++++|+++|+.+++++|+.+|++|++++|.+++++|++.||||||+++|+++|++|+
T Consensus 239 ~~ag~~~~v~i~lD~Aase~~~~~~~~Y~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~I~~IEDPl~~~D~eg~~~Lt 318 (439)
T PTZ00081 239 KKAGYEGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPIVSIEDPFDQDDWEAYAKLT 318 (439)
T ss_pred HHcCCcCceEEEEehhhhhhhhccCCceeeeeccccCccccccCHHHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHH
Confidence 99999878999999999999987667899877654445567899999999999999999999999999999999999999
Q ss_pred HHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHh
Q 013317 317 GKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSV 396 (445)
Q Consensus 317 ~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~ 396 (445)
++++.++||+|||++++++++++++++.+++|+++||++|+||||++++++++|+++|+.+++||+++||+|++++||||
T Consensus 319 ~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~iishrsgETed~~iadLAV 398 (439)
T PTZ00081 319 AAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMVSHRSGETEDTFIADLVV 398 (439)
T ss_pred HhhCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHHHHHHHHHHHHHcCCcEEEeCCCchhHHHHHHHHHH
Confidence 99965699999998789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCccccCCCCCchhHHHHHHHHHHHHHhCCCccccCcc
Q 013317 397 GLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAGTK 437 (445)
Q Consensus 397 a~~~~~~~~G~~~~~er~~k~n~ll~i~~~l~~~~~~~~~~ 437 (445)
|++++|||.|+|+|+||++||||||||||+|++++.|.+.+
T Consensus 399 a~~~~~iK~G~~~r~er~aKyN~llriee~l~~~~~~~~~~ 439 (439)
T PTZ00081 399 GLGTGQIKTGAPCRSERLAKYNQLLRIEEELGSNAVYAGEN 439 (439)
T ss_pred HcCCCceecCCCcchHHHHHHHHHHHHHHHhccccccCCCC
Confidence 99999999999999999999999999999999998888764
No 2
>KOG2670 consensus Enolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-96 Score=683.85 Aligned_cols=429 Identities=74% Similarity=1.134 Sum_probs=414.5
Q ss_pred CcceeEEEEEEEecCCCCCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcc-cCCccHHHHHHHHHHhHhhhcc
Q 013317 1 MVTINAVKARQIFDSRGNPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWD-YHGRGVLKAVQNVNSIIGPALV 79 (445)
Q Consensus 1 ~~~I~~v~~~~i~~~~g~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~-y~~~~~~~a~~~i~~~l~p~Li 79 (445)
|+.| +|++|+|+||+|+|||+|+++|+.|++ ++++|||+|||.+|+.+++|++.. |.|+++.+++..||+.|+|.|+
T Consensus 1 m~~~-kv~aR~I~dSRGnPTVEVdL~T~~G~f-RaavPSGAStGi~EAlELrDgdK~~y~GkgV~kaV~niN~~i~pali 78 (433)
T KOG2670|consen 1 MSII-KVKARQIYDSRGNPTVEVDLTTEKGVF-RAAVPSGASTGIYEALELRDGDKSKYMGKGVLKAVGNINNTIAPALI 78 (433)
T ss_pred CCce-eeehhhhhhcCCCCceeEEEEecCcce-EeecCCCCccchhhhhheecCCcceecchhHHHHHHHHHHHHHHHHH
Confidence 4445 499999999999999999999999964 899999999999999999999855 9999999999999999999999
Q ss_pred CC--CCCCHHHHHHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCC-cceeeeeeEE
Q 013317 80 GK--DPTEQTQIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNK-TLVLPVPAFN 156 (445)
Q Consensus 80 G~--d~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~-~~~ip~p~~~ 156 (445)
++ |+.+|++||+.|. .++++.| .+.+|.||+.+||+|++.+.|-..|+|||+++..+.|.. ...+|+|.|+
T Consensus 79 ~~~~dv~~Q~~iD~~mi-~LDGTeN-----KsklGaNaIlgvSlavckagAa~k~vplykhia~lag~~~~~vlPVPaFN 152 (433)
T KOG2670|consen 79 KKNLDVTDQKAIDNFMI-ELDGTEN-----KSKLGANAILGVSLAVCKAGAAEKGVPLYKHIADLAGNKQPYVLPVPAFN 152 (433)
T ss_pred ccCCChhhHHHHHHHHH-hccCCcc-----cccccchhhHHHHHHHHhhhhhhcCCcHHHHHHHhcCCCCceEeccccee
Confidence 98 9999999999999 9999999 799999999999999999999999999999999999977 4679999999
Q ss_pred eecCCccCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHH
Q 013317 157 VINGGSHADNKLAMQEFMILPIGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAI 236 (445)
Q Consensus 157 ~~~gg~~~~~~~~~~e~~~~p~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai 236 (445)
+++||.|+++++.+||||++|.++.+++|+++++.++|.++|..+|.|||....+||++|||.|++.+..+.|+++.+|+
T Consensus 153 VlNGGsHAGn~lAmQEfMIlP~ga~sf~eamr~GsevYh~LK~vik~kyG~~a~nVGDEGGfAPnI~~~~E~L~Li~~Ai 232 (433)
T KOG2670|consen 153 VLNGGSHAGNKLAMQEFMILPVGADSFAEAMRMGSEVYHHLKSVIKEKYGADATNVGDEGGFAPNIQTNEEALDLIKEAI 232 (433)
T ss_pred eecCCccccchhhhhhheecccCchhHHHHHHHhHHHHHHHHHHHHHHhCccccccccccCcCCCccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHH
Q 013317 237 AKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELT 316 (445)
Q Consensus 237 ~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~ 316 (445)
+.+||++++.|++|+++++||.. ++|+++|+.++.|+.+.+|.+++.++|.+++.+||+..|||||+.|||++|.+|.
T Consensus 233 ~kagyt~kikIgmDvAaseF~~d--gkYDLdfk~~~~d~s~~~s~~~L~dlY~~~~k~yPivSiEDPFdqdDw~~w~~~~ 310 (433)
T KOG2670|consen 233 NKAGYTGKVKIGMDVAASEFYKD--GKYDLDFKSPNSDPSRWLSGDQLADLYKSFIKDYPIVSIEDPFDQDDWEAWSKFF 310 (433)
T ss_pred HhcCCCCceEEEEeechhhhhcC--CcccccCcCCCCCcccccCHHHHHHHHHHHHhcCCeeeecCCcchhhHHHHHHHh
Confidence 99999889999999999999976 5899999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHh
Q 013317 317 GKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSV 396 (445)
Q Consensus 317 ~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~ 396 (445)
.... ++|+||++.+|++.++++.+++++||.+.+|++|+|++||.++++++|+++|+.+|++|+++||+|++++||.|
T Consensus 311 ~~~~--iqiVgDDLtvTnpkri~~Ai~~k~cN~LLlKvNQIGtvtEsiea~~~a~~~gwgvmvSHRSGETeDtFIaDL~V 388 (433)
T KOG2670|consen 311 KEVG--IQIVGDDLTVTNPKRIATAIEEKACNALLLKVNQIGTVTESIEAAKLARSAGWGVMVSHRSGETEDTFIADLVV 388 (433)
T ss_pred hccc--eEEecCcccccCHHHHHHHHHHhhccceEeeccccccHHHHHHHHHHHHhcCceEEEeccCCCcccchHHHhhh
Confidence 8877 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCccccCCCCCchhHHHHHHHHHHHHHhCCCccccCccCCCC
Q 013317 397 GLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAGTKFRTP 441 (445)
Q Consensus 397 a~~~~~~~~G~~~~~er~~k~n~ll~i~~~l~~~~~~~~~~~~~~ 441 (445)
++++.|||.|.|||+||++|||+||||||||++.++|+|.+||.|
T Consensus 389 Gl~tgqIKtGApcRsERlaKYNqLLRIeEelg~~a~~aG~~f~~~ 433 (433)
T KOG2670|consen 389 GLGTGQIKTGAPCRSERLAKYNQLLRIEEELGDDARYAGENFRNP 433 (433)
T ss_pred hhccceeecCCCchHHHHHHHHHHHHHHHHhcccceeccccccCC
Confidence 999999999999999999999999999999999999999999987
No 3
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-93 Score=689.54 Aligned_cols=417 Identities=59% Similarity=0.917 Sum_probs=401.4
Q ss_pred CcceeEEEEEEEecCCCCCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHHHHhHhhhccC
Q 013317 1 MVTINAVKARQIFDSRGNPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNVNSIIGPALVG 80 (445)
Q Consensus 1 ~~~I~~v~~~~i~~~~g~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i~~~l~p~LiG 80 (445)
|..|++|.+|+|+||+|+|||+|+|+|++|..|++++|+|+|||.+|+.+++|++..|.|+++.++++.+++.|+|.|+|
T Consensus 1 m~~I~~i~aReIlDSRGnpTVEveV~~~~g~~g~a~vPSGAStG~~EavElrdgd~ry~gkGV~~AV~nVn~~Iap~LiG 80 (423)
T COG0148 1 MSAIEDVIAREILDSRGNPTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGDSRYLGKGVLKAVANVNEIIAPALIG 80 (423)
T ss_pred CcccceeEEEEEEcCCCCceEEEEEEEcCCCcceeecCCCCCCCCceeEEecCCccccccccHHHHHHHHHHHHHHHHcC
Confidence 77899999999999999999999999999999999999999999999999999997799999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeecC
Q 013317 81 KDPTEQTQIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVING 160 (445)
Q Consensus 81 ~d~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~g 160 (445)
.|+.||..||+.|. .+++++| ++++|.||+.|||||+..++|..+++|||+||| |.....+|+|++++++|
T Consensus 81 ~da~dQ~~ID~~li-elDGT~N-----ks~lGaNailgVSlAvAkAAA~~l~~PLy~YlG---G~~a~~lPvPm~NvinG 151 (423)
T COG0148 81 LDATDQALIDSLLI-ELDGTEN-----KSKLGANAILGVSLAVAKAAAASLGIPLYRYLG---GLNALVLPVPMMNVING 151 (423)
T ss_pred CCcccHHHHHHHHH-HccCCCc-----ccccccHHHHHHHHHHHHHHHHhcCCcHHHHhc---Cccccccccceeeeecc
Confidence 99999999999999 9999999 799999999999999999999999999999999 87767899999999999
Q ss_pred CccCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcC
Q 013317 161 GSHADNKLAMQEFMILPIGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGG 240 (445)
Q Consensus 161 g~~~~~~~~~~e~~~~p~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G 240 (445)
|.|+.+.+++||||++|.++.++.|+++++.++|+++|+.++.| |... .+||||+|.|++++.++.++.+.+|++++|
T Consensus 152 G~HA~n~~d~QEFmI~p~ga~sf~ealr~~~ev~h~lk~~l~~~-g~~t-~vGDEGgfAP~l~~~eeald~i~~Aie~ag 229 (423)
T COG0148 152 GAHADNNLDIQEFMIMPVGAESFKEALRAGAEVFHHLKKLLKEK-GLST-GVGDEGGFAPNLKSNEEALDILVEAIEEAG 229 (423)
T ss_pred cccCCCCccceeEEEeecChHHHHHHHHHHHHHHHHHHHHHhhc-Cccc-cccCCcccCCCCCccHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999988 6554 499999999999999999999999999999
Q ss_pred CCc--ceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHH
Q 013317 241 YIG--KIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGK 318 (445)
Q Consensus 241 ~~~--~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~ 318 (445)
+++ +|.|++||++++||+++ +|.++ +..+|++|++++|.+++++|||..|||||..+||++|++|++.
T Consensus 230 y~~g~~i~~alD~Aasefy~~~--~Y~~~--------~~~~~~~e~i~~~~~Lv~~YpivsiEDpl~E~Dweg~~~lt~~ 299 (423)
T COG0148 230 YEPGEDIALALDVAASEFYKDG--KYVLE--------GESLTSEELIEYYLELVKKYPIVSIEDPLSEDDWEGFAELTKR 299 (423)
T ss_pred CCCCcceeeeehhhhhhhccCC--eeeec--------CcccCHHHHHHHHHHHHHhCCEEEEcCCCCchhHHHHHHHHHh
Confidence 984 69999999999999986 48876 4578999999999999999999999999999999999999999
Q ss_pred hCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhh
Q 013317 319 IGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGL 398 (445)
Q Consensus 319 ~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~ 398 (445)
++.++.|+||++++||+..+++.++.+++|.+.||++|+|++|++++.+++|+.+|+.++++|+++||+|++++|||||+
T Consensus 300 ~g~kvqivGDDLfvTN~~~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~gy~~viSHRSGETeD~tIAdLAVa~ 379 (423)
T COG0148 300 LGDKVQIVGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAGYTAVISHRSGETEDTTIADLAVAT 379 (423)
T ss_pred hCCeEEEECCcceecCHHHHHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCCCeEEEecCCCCcccchHHHHHHHh
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCchhHHHHHHHHHHHHHhCCCccccCccC
Q 013317 399 ATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAGTKF 438 (445)
Q Consensus 399 ~~~~~~~G~~~~~er~~k~n~ll~i~~~l~~~~~~~~~~~ 438 (445)
+++|||.|.++|+||++|||||||||++|++.+.|.|.++
T Consensus 380 ~agqIKTGs~sRseRiaKyNqLlrIEeeLg~~a~y~g~~~ 419 (423)
T COG0148 380 NAGQIKTGSLSRSERVAKYNELLRIEEELGDKARYAGIKE 419 (423)
T ss_pred CCCeeecCCCcchhHHHHHHHHHHHHHHhhhccccCChHh
Confidence 9999999999999999999999999999999999998764
No 4
>PLN00191 enolase
Probab=100.00 E-value=6.8e-93 Score=724.35 Aligned_cols=431 Identities=81% Similarity=1.210 Sum_probs=406.0
Q ss_pred CcceeEEEEEEEecCCCCCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHHHHhHhhhccC
Q 013317 1 MVTINAVKARQIFDSRGNPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNVNSIIGPALVG 80 (445)
Q Consensus 1 ~~~I~~v~~~~i~~~~g~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i~~~l~p~LiG 80 (445)
||+|++|++|+|+||+|+|||+|+|+|++|.+ ++++|+|+|||.+|+.+++|+++.|.|+++.+++..+++.|+|.|+|
T Consensus 25 ~~~I~~v~~r~ildsrG~PtVeveV~~~~G~~-~a~~psgastG~~Ea~elrd~~~~~~g~gv~~Av~~v~~~ia~~LiG 103 (457)
T PLN00191 25 MATITKVKARQIIDSRGNPTVEVDLHTSKGMF-RAAVPSGASTGIYEALELRDGDKDYLGKGVLKAVKNVNEIIAPALIG 103 (457)
T ss_pred CCeeeEEEEEEEEcCCCCeEEEEEEEECCCCE-EEEeccCCCCCcceeeeccCCCcccCCccHHHHHHHHHHHHHHHHcC
Confidence 78999999999999999999999999999976 99999999999999999999887799999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeecC
Q 013317 81 KDPTEQTQIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVING 160 (445)
Q Consensus 81 ~d~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~g 160 (445)
+|+.||++||+.|. .+++++| ++.+|.||+.|||||+|++.|+.+|+|||+||+++.|..+..+|+|++++++|
T Consensus 104 ~~~~dq~~iD~~l~-~ldgt~n-----k~~lGanailavS~A~a~AaA~~~~~PLy~~l~~~gg~~~~~lP~p~~niinG 177 (457)
T PLN00191 104 MDPTDQTQIDNFML-ELDGTPN-----KGKLGANAILAVSLAVCKAGAAEKGVPLYKHIADLAGNKKLVLPVPAFNVING 177 (457)
T ss_pred CChhhHHHHHHHHH-HccCCCC-----ccccchhHHHHHHHHHHHHHHHHcCCcHHHHHHhhCCCCCccccceeEEeecC
Confidence 99999999999999 9999988 78999999999999999999999999999999444486677899999999999
Q ss_pred CccCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcC
Q 013317 161 GSHADNKLAMQEFMILPIGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGG 240 (445)
Q Consensus 161 g~~~~~~~~~~e~~~~p~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G 240 (445)
|+|+++.+++||||++|.++.+++|+++++.++|+++|+.++.|+|.....+||+|||.|+++++++.|+.+++|++++|
T Consensus 178 G~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~~~vgdeGg~ap~~~~~~eal~ll~eAi~~ag 257 (457)
T PLN00191 178 GSHAGNKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDACNVGDEGGFAPNIQDNKEGLELLKEAIEKAG 257 (457)
T ss_pred ccccccccchheeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcCccCCCCCcCCCCCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999888778899999999999999999999999999999
Q ss_pred CCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhC
Q 013317 241 YIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIG 320 (445)
Q Consensus 241 ~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~ 320 (445)
|++++.|++|+++++||+. +++|+++|++++++.+..+|++++++++.+++++|++.||||||+++|+++|++|+++..
T Consensus 258 ~~~~i~i~lD~Aase~~~~-~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I~~IEDPl~~~D~eg~~~Lt~~~~ 336 (457)
T PLN00191 258 YTGKIKIGMDVAASEFYTK-DKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIEDPFDQDDWEHWAKLTSLED 336 (457)
T ss_pred CCCceEEEeehhhhhhccc-CCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCcEEEECCCCcccHHHHHHHHccCC
Confidence 9878999999999999973 468988765433333456899999999999888999999999999999999999999977
Q ss_pred CceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhcC
Q 013317 321 RHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLAT 400 (445)
Q Consensus 321 ~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~ 400 (445)
+||+|||++++++++++++++.+++|+++||++|+||||++++++++|+++|+.+++||+++||++++++|||||+.+
T Consensus 337 --ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~ishrsgET~d~~~Adlava~~~ 414 (457)
T PLN00191 337 --VQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSHRSGETEDSFIADLAVGLAT 414 (457)
T ss_pred --CcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHCCCEEEeCCCCccchHHHHHHHHHHhCC
Confidence 999999997789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCchhHHHHHHHHHHHHHhCCCccccCccCCCC
Q 013317 401 GQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAGTKFRTP 441 (445)
Q Consensus 401 ~~~~~G~~~~~er~~k~n~ll~i~~~l~~~~~~~~~~~~~~ 441 (445)
+++++|+|+|+||++||||||||||+|++.+.|.|..|+.+
T Consensus 415 ~~ik~G~~~r~er~aKyN~llriee~l~~~~~~~~~~~~~~ 455 (457)
T PLN00191 415 GQIKTGAPCRSERLAKYNQLLRIEEELGDEAVYAGENFRKP 455 (457)
T ss_pred CccccCCCcchHHHHHHHHHHHHHHHhcccceecccccccC
Confidence 99999999999999999999999999999999999999875
No 5
>PRK00077 eno enolase; Provisional
Probab=100.00 E-value=1.9e-90 Score=708.36 Aligned_cols=418 Identities=58% Similarity=0.911 Sum_probs=393.1
Q ss_pred CcceeEEEEEEEecCCCCCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcc-cCCccHHHHHHHHHHhHhhhcc
Q 013317 1 MVTINAVKARQIFDSRGNPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWD-YHGRGVLKAVQNVNSIIGPALV 79 (445)
Q Consensus 1 ~~~I~~v~~~~i~~~~g~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~-y~~~~~~~a~~~i~~~l~p~Li 79 (445)
||+|++|++|+|+||+|+|||+|+|+|++|.+|++++|+|+|+|.+|+.+++|+++. |.|+++.+++..|++.|+|.|+
T Consensus 1 ~~~I~~v~~r~i~dsrg~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~v~~~iap~Li 80 (425)
T PRK00077 1 MSKIEDIIAREILDSRGNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLGKGVLKAVENVNEEIAPALI 80 (425)
T ss_pred CCeEEEEEEEEEEcCCCCeEEEEEEEECCCCEEEEEEeccCCCCcceeeecCCCCccccCCcCHHHHHHHHHHHHHHHHc
Confidence 789999999999999999999999999999999999999999999999999998765 9999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeec
Q 013317 80 GKDPTEQTQIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVIN 159 (445)
Q Consensus 80 G~d~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~ 159 (445)
|+||.||++||+.|. .++++.| ++.+|.+|++|||||+||+.||.+|+|||+||| |..++++|+|+|++++
T Consensus 81 G~d~~d~~~id~~l~-~ldgt~~-----~~~~G~nAi~avsiAl~da~ak~~g~PLy~lLG---G~~~~~~pvp~~n~i~ 151 (425)
T PRK00077 81 GLDALDQRAIDKAMI-ELDGTPN-----KSKLGANAILGVSLAVAKAAADSLGLPLYRYLG---GPNAKVLPVPMMNIIN 151 (425)
T ss_pred CCChhhHHHHHHHHH-HhhCccc-----cCccchHHHHHHHHHHHHHHHHHhCCcHHHHhC---CCCcccccceeEEEEc
Confidence 999999999999998 7888766 566778999999999999999999999999999 8766789999999999
Q ss_pred CCccCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhc
Q 013317 160 GGSHADNKLAMQEFMILPIGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKG 239 (445)
Q Consensus 160 gg~~~~~~~~~~e~~~~p~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~ 239 (445)
||.|+.++++++|+|++|.++.+++++++++.++|+++|..++.| |. ..++|++|+|.|+++++++.|+++++|++++
T Consensus 152 GG~ha~~~~~~qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~-g~-~~~vGdeGg~~p~~~~~~e~l~~lreAi~~a 229 (425)
T PRK00077 152 GGAHADNNVDIQEFMIMPVGAPSFKEALRMGAEVFHTLKKVLKEK-GL-STAVGDEGGFAPNLKSNEEALDLILEAIEKA 229 (425)
T ss_pred ccccccCchhhhHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHhc-CC-CCcCCCcCCcCCCccchHHHHHHHHHHHHHh
Confidence 999998889999999999999999999999999999999888877 54 4679999999999988999999999999999
Q ss_pred CCC-c-ceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHH
Q 013317 240 GYI-G-KIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTG 317 (445)
Q Consensus 240 G~~-~-~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~ 317 (445)
||+ + ++.|+||+|+++||+ +++|+++ ++.||++++++++.+++++|++.||||||+++|+++|++|++
T Consensus 230 g~~~G~di~l~lD~aas~~~~--~~~y~~~--------~~~~s~~e~~~~~~~l~e~y~i~~iEdPl~~~D~~g~~~L~~ 299 (425)
T PRK00077 230 GYKPGEDIALALDCAASEFYK--DGKYVLE--------GEGLTSEEMIDYLAELVDKYPIVSIEDGLDENDWEGWKLLTE 299 (425)
T ss_pred cCCCCCceEEEEehhhhhccc--CCeeecc--------CCcCCHHHHHHHHHHHHhhCCcEEEEcCCCCccHHHHHHHHH
Confidence 998 4 799999999999994 4689874 567999999999999999999999999999999999999999
Q ss_pred HhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhh
Q 013317 318 KIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVG 397 (445)
Q Consensus 318 ~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a 397 (445)
+++.++||++||++++++++++++++.+++|+++||++|+||||++++++++|+++|+.++++|+++||++++++|||||
T Consensus 300 ~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~sgEt~d~~~a~lava 379 (425)
T PRK00077 300 KLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTAVVSHRSGETEDTTIADLAVA 379 (425)
T ss_pred hcCCCCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEeCCCCcchHHHHHHHHHH
Confidence 99556999999987788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCccccCCCCCchhHHHHHHHHHHHHHhCCCccccC-ccCC
Q 013317 398 LATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAG-TKFR 439 (445)
Q Consensus 398 ~~~~~~~~G~~~~~er~~k~n~ll~i~~~l~~~~~~~~-~~~~ 439 (445)
++++|+|+|+|+|+||++||||||||||+|++.+.|.+ ..|+
T Consensus 380 ~~~~~ik~G~~~~~er~~k~n~ll~i~~~l~~~~~~~~~~~~~ 422 (425)
T PRK00077 380 TNAGQIKTGSLSRSERIAKYNQLLRIEEELGDAARYAGKKAFK 422 (425)
T ss_pred hCCccccCCCCcchHHHHHHHHHHHHHHHhcccceecchhhcc
Confidence 99999999999999999999999999999999999988 4664
No 6
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=100.00 E-value=1.3e-88 Score=691.46 Aligned_cols=405 Identities=64% Similarity=0.989 Sum_probs=380.7
Q ss_pred EEEEEEEecCCCCCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcc-cCCccHHHHHHHHHHhHhhhccCCCCC
Q 013317 6 AVKARQIFDSRGNPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWD-YHGRGVLKAVQNVNSIIGPALVGKDPT 84 (445)
Q Consensus 6 ~v~~~~i~~~~g~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~-y~~~~~~~a~~~i~~~l~p~LiG~d~~ 84 (445)
+|++|+|+||+|+|||+|+|+|++|.+|+|++|+|+|+|.+|+.+++|+++. |.|+++.+++..|++.|+|.|+|+||.
T Consensus 1 ~v~~r~i~dsrg~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~ 80 (408)
T cd03313 1 KIKAREILDSRGNPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVLKAVKNVNEIIAPALIGMDVT 80 (408)
T ss_pred CeEEEEEecCCCCceEEEEEEECCCCEEEEeecCCCCCCcceeeecCCCCcccccCCcHHHHHHHHHHHHHHHHcCCChh
Confidence 4899999999999999999999999999999999999999999999998875 999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeecCCccC
Q 013317 85 EQTQIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVINGGSHA 164 (445)
Q Consensus 85 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~gg~~~ 164 (445)
+|++||+.|. .++++.| ++.+|.||++|||||+||+.||.+|+|||+||| |..++++|+|+|++++||.|+
T Consensus 81 dq~~id~~l~-~~dgt~~-----~~~~G~nAi~avsiAl~da~A~~~g~PLy~~Lg---g~~~~~lpvp~~nvi~GG~ha 151 (408)
T cd03313 81 DQRAIDKLLI-ELDGTPN-----KSKLGANAILGVSLAVAKAAAAALGLPLYRYLG---GLAAYVLPVPMFNVINGGAHA 151 (408)
T ss_pred hHHHHHHHHH-HhcCCCc-----ccccchHHHHHHHHHHHHHHHHHcCCcHHHHhc---CCCCcccceeeEEEecCcccc
Confidence 9999999999 7888876 678889999999999999999999999999999 877778999999999999999
Q ss_pred CCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcCCCc-
Q 013317 165 DNKLAMQEFMILPIGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIG- 243 (445)
Q Consensus 165 ~~~~~~~e~~~~p~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G~~~- 243 (445)
++++++||||++|.++.+++++++++.++|+++|+.++.|.|....++|++|+|.|++++++++|+++++|++++||++
T Consensus 152 ~~~~~iqe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~~g~~~~~vgdeGg~~p~~~~d~~~l~~i~eAi~~~g~~~G 231 (408)
T cd03313 152 GNKLDFQEFMIVPVGAPSFSEALRMGAEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPG 231 (408)
T ss_pred cCccccccccccccCccCHHHHHHHHHHHHHHHHHHHHhhcCccccccccccCcCCCCCChHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999888888766678999999999999989999999999999999984
Q ss_pred -ceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCc
Q 013317 244 -KIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRH 322 (445)
Q Consensus 244 -~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~ 322 (445)
++.|+||+|+++||+++ +|.+.+. .|+.||++++++++.+++++|++.||||||+++|+++|++|+++++.+
T Consensus 232 ~dv~i~lD~aas~~~~~~--~y~~~~~-----~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~D~eg~~~L~~~~g~~ 304 (408)
T cd03313 232 KKIAIALDVAASEFYDEG--KYVYDSD-----EGKKLTSEELIDYYKELVKKYPIVSIEDPFDEDDWEGWAKLTAKLGDK 304 (408)
T ss_pred CeEEEEEehhhhhhcccC--cceeccC-----CCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCcCHHHHHHHHHhcCCC
Confidence 79999999999999765 5655211 368899999999999988899999999999999999999999998545
Q ss_pred eEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhcCCc
Q 013317 323 VQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLATGQ 402 (445)
Q Consensus 323 ~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~ 402 (445)
+||+|||++++++++++++++.+++|+++||++|+||||++++++++|+++|+.+++||+++||++++++|||||++++|
T Consensus 305 ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~sh~sget~d~~~adlava~~~~~ 384 (408)
T cd03313 305 IQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFIADLAVALGAGQ 384 (408)
T ss_pred CeEEcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEccCCCchhHHHHHHHHHHHhCcCc
Confidence 99999998778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCchhHHHHHHHHHHHHH
Q 013317 403 IKTGAPCRSERLAKYNQLLRIEEE 426 (445)
Q Consensus 403 ~~~G~~~~~er~~k~n~ll~i~~~ 426 (445)
+|.|+|+|+||++||||||||||+
T Consensus 385 ik~G~~~r~er~~k~n~ll~i~~~ 408 (408)
T cd03313 385 IKTGAPCRSERTAKYNQLLRIEEE 408 (408)
T ss_pred cccCCCcchHHHHHHHHHHHHhhC
Confidence 999999999999999999999985
No 7
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=100.00 E-value=4.6e-88 Score=690.81 Aligned_cols=419 Identities=57% Similarity=0.909 Sum_probs=389.2
Q ss_pred eeEEEEEEEecCCCCCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcc-cCCccHHHHHHHHHHhHhhhccCCC
Q 013317 4 INAVKARQIFDSRGNPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWD-YHGRGVLKAVQNVNSIIGPALVGKD 82 (445)
Q Consensus 4 I~~v~~~~i~~~~g~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~-y~~~~~~~a~~~i~~~l~p~LiG~d 82 (445)
|++|++|+|+||+|+|||+|+|+|++|.+|++++|+|+|+|.+|+.+++|+++. |.|+++.+++..+++.|+|.|+|+|
T Consensus 1 i~~i~~r~i~dsrg~ptvev~v~~~~g~~g~~~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d 80 (425)
T TIGR01060 1 IKDIRAREILDSRGNPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKGVLKAVENVNDIIAPALIGMD 80 (425)
T ss_pred CcEEEEEEEecCCCCceEEEEEEECCCCEEEEeccCCCCCCcceeeeccCCCccccCCcCHHHHHHHHHHHHHHHHcCCC
Confidence 789999999999999999999999999999999999999999999999998865 9999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeecCCc
Q 013317 83 PTEQTQIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVINGGS 162 (445)
Q Consensus 83 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~gg~ 162 (445)
|.||++||+.|. .++++.+ ++.+|.+|++|||||+||+.||.+|+|||+||| |..++++|+|++++++||.
T Consensus 81 ~~d~~~id~~l~-~~d~t~~-----~~~~G~nAi~avs~Al~da~ak~~g~Ply~lLG---G~~~~~lPvp~~n~i~GG~ 151 (425)
T TIGR01060 81 AFDQREIDQIMI-ELDGTPN-----KSKLGANAILGVSMAVAKAAAKSLGLPLYRYLG---GKNAYVLPVPMMNIINGGA 151 (425)
T ss_pred HHHHHHHHHHHH-hcCCcCC-----cchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhC---CCCCCceeeEEEEeecccc
Confidence 999999999998 6777665 455778999999999999999999999999999 9777889999999999999
Q ss_pred cCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcCCC
Q 013317 163 HADNKLAMQEFMILPIGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYI 242 (445)
Q Consensus 163 ~~~~~~~~~e~~~~p~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G~~ 242 (445)
|+.++++++|+|++|.++.+++++++++.++|+++|+.++.| |. ..++|++|+|.|+++.+++.|+.++++++++|++
T Consensus 152 ~a~~~~~~qe~~i~p~~a~~~~e~~~~~~~g~~~lK~~l~~~-~~-~~~vGdeGg~~p~~~~~~~~l~~~~~ai~~~~~~ 229 (425)
T TIGR01060 152 HADNNLDFQEFMIMPVGAKSFREALRMGAEVFHALKKLLKEK-GL-ATGVGDEGGFAPNLASNEEALEIISEAIEKAGYK 229 (425)
T ss_pred cccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhc-CC-CCCCCcccccCCCccccHHHHHHHHHHHHHHhhc
Confidence 988888999999999999999999999999999999878766 54 4678999999999888899999999999998877
Q ss_pred --cceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhC
Q 013317 243 --GKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIG 320 (445)
Q Consensus 243 --~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~ 320 (445)
+++.|++|+|++++|+.++++|++.. .++.+|++++++++.+++++|++.||||||+++|+++|++|+++++
T Consensus 230 ~G~di~l~lD~aas~~~~~~~~~y~~~~------~~~~~s~~eai~~~~~lle~~~i~~iEdPl~~~D~~~~~~L~~~~~ 303 (425)
T TIGR01060 230 PGEDVALALDCAASEFYDEEDGKYVYKG------ENKQLTSEEMIEYYKELVEKYPIVSIEDGLSEEDWEGWAELTKELG 303 (425)
T ss_pred cCCceEEEEEccccccccccCceeeecC------cccccCHHHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhcC
Confidence 37999999999999987677898751 2356899999999887889999999999999999999999999995
Q ss_pred CceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhcC
Q 013317 321 RHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLAT 400 (445)
Q Consensus 321 ~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~ 400 (445)
.++||++||++++++++++++++.+++|+++||++|+||||++++++++|+++|+.++++|+++||++++++|||||+++
T Consensus 304 ~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~sgEt~d~~~a~lava~~~ 383 (425)
T TIGR01060 304 DKVQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIGTLTETLDAVELAKKAGYTAVISHRSGETEDTTIADLAVALNA 383 (425)
T ss_pred CCCeEEeCCCcccCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEEecCCcccHHHHHHHHHHHhCc
Confidence 45999999987788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCchhHHHHHHHHHHHHHhCCCccccC-ccCC
Q 013317 401 GQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAG-TKFR 439 (445)
Q Consensus 401 ~~~~~G~~~~~er~~k~n~ll~i~~~l~~~~~~~~-~~~~ 439 (445)
+++|+|+|+|+||++||||||||||+|++++.|.+ ..|+
T Consensus 384 ~~ik~g~~~~~er~~kyn~ll~i~~~l~~~~~~~~~~~~~ 423 (425)
T TIGR01060 384 GQIKTGSLSRSERIAKYNQLLRIEEELGDSARYAGKNTFY 423 (425)
T ss_pred CccccCCCchHHHHHHHHHHHHHHHHhcccceecchhccC
Confidence 99999999999999999999999999999999998 4664
No 8
>PTZ00378 hypothetical protein; Provisional
Probab=100.00 E-value=6.7e-79 Score=613.32 Aligned_cols=404 Identities=21% Similarity=0.328 Sum_probs=367.9
Q ss_pred cceeEEEEEEEecCCCCCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcc--c-CCccHHHHHHHHHHhHhhhc
Q 013317 2 VTINAVKARQIFDSRGNPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWD--Y-HGRGVLKAVQNVNSIIGPAL 78 (445)
Q Consensus 2 ~~I~~v~~~~i~~~~g~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~--y-~~~~~~~a~~~i~~~l~p~L 78 (445)
++|++|++|+|+||+|+|||+|+|+|++|.+ +|+|+||| |+.+++|+++. | .|+++..++. +.|+|.|
T Consensus 49 ~~I~~i~areIlDSrGnPTVev~v~l~~G~~----vPSGAStG--EA~elRDgd~~~~~g~gkgV~~Av~---~~i~p~L 119 (518)
T PTZ00378 49 DEIRALVHNEVLSPAGETVLRFTLELLNGME----VSSGALLS--PSHGERDGEADATLDPAEYTTEALQ---NSYFPRL 119 (518)
T ss_pred CeeeEEEEEEEEcCCCCeeEEEEEEECCCCE----ECCCCccc--ceeeeecCCcccccCCCccHHHHHH---hhhHHHH
Confidence 4799999999999999999999999999964 89999999 99999998864 6 6778888865 6799999
Q ss_pred cCCCCCCHHHHHHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCC----Ccceeeeee
Q 013317 79 VGKDPTEQTQIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGN----KTLVLPVPA 154 (445)
Q Consensus 79 iG~d~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~----~~~~ip~p~ 154 (445)
+|+++.||.+||+.|. .+++++| ++++|.||+.|||||++.++|+..++|||+|||.+.|. ....+|+|+
T Consensus 120 ig~~~~dQ~~iD~~Li-~lDGT~n-----ks~lGaNailavS~A~akAAA~~~~~PLy~yL~~~~~~~~~~~~~~lP~P~ 193 (518)
T PTZ00378 120 LQLGARDQREFDSTLR-AALSTSP-----LANVGSAVQWALSIVASLAAARCRSVPLFQYLRALFGSLTSVETFSMPQLC 193 (518)
T ss_pred cCCChHhHHHHHHHHH-HhcCCCc-----ccchhhHHHHHHHHHHHHHHHHHcCCCHHHHhhccccccccCCCcccCccc
Confidence 9999999999999999 9999999 79999999999999999999999999999999944332 245799999
Q ss_pred EEeecCCccCCCcccccceeeccCCc--ccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCC-CCCccCchHHHHH
Q 013317 155 FNVINGGSHADNKLAMQEFMILPIGA--STFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGF-APNIQESYEGFEL 231 (445)
Q Consensus 155 ~~~~~gg~~~~~~~~~~e~~~~p~~~--~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~-~~~~~~~~~~l~~ 231 (445)
+|+++||.|+++++++||||++|.++ .+++|+++++.++|+++++ | ....+|||||| .|++++.++.|++
T Consensus 194 ~NiinGG~HA~n~l~iQEFmI~P~ga~g~s~~ealr~~~evyh~L~~------~-~~t~vGDEGGfaap~~~~~eeAL~l 266 (518)
T PTZ00378 194 ITFFGPGNPSTARLALKSVLFSPVMPSGTVLRERMQKIFAAFHHFCQ------S-HNSSVRSDGSLHWDGFANLTDAVKL 266 (518)
T ss_pred eEeecCccCCCCCCCceEEEEeeCCCCCCCHHHHHHHHHHHHHHHhh------c-ccCccCCCcCcCCCCCCCHHHHHHH
Confidence 99999999999999999999999977 8999999999999998842 3 24789999999 6778889999999
Q ss_pred HHHHHHhcCCC-c-ceEEEEecccccc------------ccccCc----ceeecccCCCCCCCCCcChHHHHHHHHHhhh
Q 013317 232 LKTAIAKGGYI-G-KIVIGMDVAASEF------------YDRKDK----TYDLNFKEENNDGSQKVSGDGLKNVYRSFIS 293 (445)
Q Consensus 232 v~~ai~~~G~~-~-~i~l~vD~~a~~~------------~~~~~~----~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~ 293 (445)
+.+|++++||+ + +|.|++|+++++| |+++++ .|.+. + ....+|.+|++++|.++++
T Consensus 267 i~eAi~~aGy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~k~~~e~~Y~l~-~-----~~~~~t~~elieyy~~li~ 340 (518)
T PTZ00378 267 ATEALRAVQLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEAKDDCEVLYSLF-P-----GEPDVTGDQLSEYVREQLQ 340 (518)
T ss_pred HHHHHHHhCCCCCCeEEEEEecccccccccccccccchhhccccCCCceeeeec-C-----CCCCCCHHHHHHHHHHHHH
Confidence 99999999998 4 6999999999999 976322 57763 2 1233799999999999999
Q ss_pred cCC--eeEEECCCCccCHHHHHHHHHHhCCceEEEecccccc-CHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHH
Q 013317 294 DHP--IVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVT-NPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMA 370 (445)
Q Consensus 294 ~~~--i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~-~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A 370 (445)
+|| |.+|||||+.+|+++|++|+++++.++.|+||++++| |+..+++.++.+++|.+.||++|+|+||++++++++|
T Consensus 341 kYP~iIvsIEDp~~E~D~~gw~~lt~~lG~~iqivGDDL~vT~n~~ri~~gi~~~~~NaiLIK~NQIGTlSEtieav~lA 420 (518)
T PTZ00378 341 AVPDIVVYVEDTHCDEDTFGLQRLQAALGDSIVLSGVDVYARSEYKKVESGLRGLWTSNIVLNPCAIGTLSDVVEIVRAV 420 (518)
T ss_pred HCCCceEEEecCCCchHHHHHHHHHHHhCCeEEEECCCcCcCCCHHHHHHHHhcCCCceEEEccccceeHHHHHHHHHHH
Confidence 999 9999999999999999999999988899999999999 8999999999999999999999999999999999999
Q ss_pred HHcCCcEE---ecCCCCCChhHHHHHHHhhhcCCccccCCCCCchhHHHHHHHHHHHHHhCCCccccC
Q 013317 371 KRAGWGVM---ASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAG 435 (445)
Q Consensus 371 ~~~g~~~~---~~~~~~et~~~~~~~la~a~~~~~~~~G~~~~~er~~k~n~ll~i~~~l~~~~~~~~ 435 (445)
+++|+.+| ++|++| +|++++|||||+++.|||.|+|+|+||++||||||||||||+++.....
T Consensus 421 ~~~g~~~v~v~vShRSG--eD~~IAdLAVa~ga~~IKtGa~~r~ER~aKyNqLlrIeeeLg~~~~l~~ 486 (518)
T PTZ00378 421 GEDEGRAVTVLVQTLAG--NAATAAHLAVAMGARFLCSGGLFSAHQCEVVSQLASRQDELTHSRMLAP 486 (518)
T ss_pred HHcCCcEEccccCCCcC--CccHHHHHHHHcCCCccccCCCccchHHHHHHHHHHHHHHhCcCCccCC
Confidence 99999998 999988 6999999999999999999999999999999999999999987765554
No 9
>PRK08350 hypothetical protein; Provisional
Probab=100.00 E-value=6.9e-71 Score=528.69 Aligned_cols=331 Identities=30% Similarity=0.441 Sum_probs=302.3
Q ss_pred CcceeEEEEEEEecCCCCCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCc-ccCCccHHHHHHHHHHhHhhhcc
Q 013317 1 MVTINAVKARQIFDSRGNPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGW-DYHGRGVLKAVQNVNSIIGPALV 79 (445)
Q Consensus 1 ~~~I~~v~~~~i~~~~g~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~-~y~~~~~~~a~~~i~~~l~p~Li 79 (445)
|++|++|++|+|+||+|+|||+|+|+|++| +|++++||.. ++ .|. .++.++++.+++.|+|.|+
T Consensus 1 M~~I~~i~aReIlDSRGnPTVEveV~~~~g-~gra~vPSD~-------------d~~ry~-~gV~~AV~nVn~~Iap~Li 65 (341)
T PRK08350 1 MTVIENIIGRVAVLRGGKYSVEVDVITDSG-FGRFAAPIDE-------------NPSLYI-AEAHRAVSEVDEIIGPELI 65 (341)
T ss_pred CceeEEEEEEEEEcCCCCceEEEEEEECCc-EEEEEecCCC-------------Cccccc-chHHHHHHHHHHHHHHHHc
Confidence 778999999999999999999999999999 8999999832 22 266 7899999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeec
Q 013317 80 GKDPTEQTQIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVIN 159 (445)
Q Consensus 80 G~d~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~ 159 (445)
|+|+.+|+.||+.|. .++|++| ++.+|.||+.|||||++.++|+.+|+|||+||| |.....+|+|++++++
T Consensus 66 G~d~~dQ~~ID~~mi-elDGT~n-----Ks~lGaNAiLavS~A~akAaA~~~~~PLy~ylg---g~~~~~lPvP~~NiiN 136 (341)
T PRK08350 66 GFDASEQELIDSYLW-EIDGTED-----FSHIGANTALAVSVAVAKAAANSKNMPLYSYIG---GTFTTELPVPILEFAE 136 (341)
T ss_pred CCCHHHHHHHHHHHH-hccCCcc-----ccccCchhhHHHHHHHHHHHHHHcCCcHHHHhc---CCCCCccCccceeeec
Confidence 999999999999999 9999999 799999999999999999999999999999999 7555679999999999
Q ss_pred CCccCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhc
Q 013317 160 GGSHADNKLAMQEFMILPIGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKG 239 (445)
Q Consensus 160 gg~~~~~~~~~~e~~~~p~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~ 239 (445)
|| ++ |||++| .++++ +.++|+++|..||. +.++.|+.+.+|++++
T Consensus 137 GG-------~~-EFmI~p------~ea~~-~~ev~~~lk~il~~--------------------~~eeaL~ll~eAi~~a 181 (341)
T PRK08350 137 DE-------NF-EYYVLV------RDLME-ITDVVDAVNKILEN--------------------SKEVSLEGLSKASEKA 181 (341)
T ss_pred CC-------ce-EEEECc------hHhhh-hHHHHHHHHHHHhh--------------------ChHHHHHHHHHHHHHh
Confidence 97 45 999998 58888 78999999988773 2488999999999999
Q ss_pred CCC-c-ceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHH
Q 013317 240 GYI-G-KIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTG 317 (445)
Q Consensus 240 G~~-~-~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~ 317 (445)
||+ + |+.+.+|+. ..+|++|++ +++++|||.+|| ||+.+ ++|++|++
T Consensus 182 Gy~~g~dv~~~lD~~------------------------~~~t~~eli----~l~~kYPIvsIE-p~~E~--~gw~~lt~ 230 (341)
T PRK08350 182 GDELGLEVALGIAQK------------------------REMETEKVL----NLVEDNNIAYIK-PIGDE--ELFLELIA 230 (341)
T ss_pred CCCccccEEEeeccC------------------------CCCCHHHHH----HHHHHCCEEEEE-cCCcc--hHHHHHHh
Confidence 998 4 699999992 124788876 678999999999 99954 99999999
Q ss_pred HhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhh
Q 013317 318 KIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVG 397 (445)
Q Consensus 318 ~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a 397 (445)
+ ..+++|+||++++||+.. +.++||.+.||++|+|++|++++.+++|+++|+.+|++|++|||+|++++|||||
T Consensus 231 ~-g~~iqiVGDDLfvTN~~~-----~~~~~NaiLiK~NQIGTltEt~~ai~~A~~~g~~~vvSHRSGETeD~~IAdLaVa 304 (341)
T PRK08350 231 G-THGVFIDGEYLFRTRNIL-----DRRYYNALSIKPINLGTLTDLYNLVNDVKSERITPILAEAKYESADEALPHLAVG 304 (341)
T ss_pred c-CCceEEEcccccccChhH-----hhCccceEEEeeccceeHHHHHHHHHHHHHcCCeEEeecCCCCCcchhHHHHHHH
Confidence 9 678999999999999654 8999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCccccCCCCCchhHHHHHHHHHHHHHhCCCc
Q 013317 398 LATGQIKTGAPCRSERLAKYNQLLRIEEELGPAA 431 (445)
Q Consensus 398 ~~~~~~~~G~~~~~er~~k~n~ll~i~~~l~~~~ 431 (445)
++++|+| +|+||++||||||||||+|++.+
T Consensus 305 ~~agqIK----~R~ER~aKyN~LlrIee~lg~~~ 334 (341)
T PRK08350 305 LRCPAML----IHKDSVEKINELNRIAEDLGERG 334 (341)
T ss_pred hCCCccc----cchhHHHHHHHHHHHHHHcCCCe
Confidence 9999998 79999999999999999997654
No 10
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=100.00 E-value=1e-67 Score=509.76 Aligned_cols=293 Identities=66% Similarity=1.070 Sum_probs=258.7
Q ss_pred eeeeeeEEeecCCccCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHH
Q 013317 149 VLPVPAFNVINGGSHADNKLAMQEFMILPIGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEG 228 (445)
Q Consensus 149 ~ip~p~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~ 228 (445)
.+|+|++++++||.|+++++++||||++|.++.+++|+++++.++|+++|+.++.|+|.....+||+|||.|++++.++.
T Consensus 3 ~lPvP~~nvinGG~ha~~~l~~QEfmI~P~ga~s~~eal~~~~eVy~~Lk~il~~k~G~~~t~vgDeGGfaP~~~~~eea 82 (295)
T PF00113_consen 3 TLPVPMFNVINGGKHAGNKLDFQEFMIVPVGADSFSEALRMGAEVYHALKKILKKKGGKFATNVGDEGGFAPNIDDNEEA 82 (295)
T ss_dssp EE-EEEEEEEE-GGGSSSSCSSSEEEEEETT-SSHHHHHHHHHHHHHHHHHHHHHHH-GGGGSBETTSSB--SBSSHHHH
T ss_pred ccCcceEEEEcCccCCCCcccceEEEEEeccCCCHHHHHHhhhHHHHHHHHHHhhcccccccccCcccccCCCCcchhHH
Confidence 68999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHHHHhcCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccC
Q 013317 229 FELLKTAIAKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDD 308 (445)
Q Consensus 229 l~~v~~ai~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D 308 (445)
|+++.+|++++||+++|.|++|++|++||+.++++|++++..+..++.+.+|++|++++|.+++++|||.+|||||+.+|
T Consensus 83 L~ll~~Ai~~aGy~~~v~ialD~AAsefyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li~~YPIvsIEDpf~edD 162 (295)
T PF00113_consen 83 LDLLMEAIKEAGYEPDVAIALDVAASEFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLIKKYPIVSIEDPFDEDD 162 (295)
T ss_dssp HHHHHHHHHHTT-TTTBEEEEE--GGGGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHHHHS-EEEEESSS-TT-
T ss_pred HHHHHHHHHHccccceeeeeccccHHHhhhccCCeEEEeecccccccccccCHHHHHHHHHHHHHhcCeEEEEccccccc
Confidence 99999999999999999999999999999988899999876555555678999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 013317 309 WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETED 388 (445)
Q Consensus 309 ~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~ 388 (445)
+++|++|++++++++.|+||++++||+.++++.++.++||.+.||++|+|++|++++++++|+++|+.+|++|+++||+|
T Consensus 163 ~e~w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~NQigTvte~lea~~~a~~~g~~~vvS~rsgEteD 242 (295)
T PF00113_consen 163 WEGWAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKACNALLLKPNQIGTVTETLEAVKLAKSAGWGVVVSHRSGETED 242 (295)
T ss_dssp HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT--SEEEE-HHHHSSHHHHHHHHHHHHHTT-EEEEE--SS--S-
T ss_pred hHHHHHHHHhhhcceeeecccccccchhhhhccchhhhccchhhhhhhhHHHHHHHHHHHHHHHCCceeeccCCCCCcCc
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCccccCCCCCchhHHHHHHHHHHHHHhCCCccccCccCCCC
Q 013317 389 TFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAGTKFRTP 441 (445)
Q Consensus 389 ~~~~~la~a~~~~~~~~G~~~~~er~~k~n~ll~i~~~l~~~~~~~~~~~~~~ 441 (445)
++++|||||++++|+|.|+|+|+||++||||||||||+|++++.|.|++||.|
T Consensus 243 ~~iadLaVg~~a~~iK~G~p~r~Er~aKyN~LLrIeeelg~~a~~~g~~~~~~ 295 (295)
T PF00113_consen 243 TFIADLAVGLGAGQIKTGAPCRGERIAKYNRLLRIEEELGSKAKYAGKNFRKP 295 (295)
T ss_dssp -HHHHHHHHTT-SEEEEESSSSHHHHHHHHHHHHHHHHHGGGSEE-GGGCTSC
T ss_pred hhHHHHHhccCcCeEecccchhhHHHHHhhHHHHHHHHcCCCCEECChhhhCc
Confidence 99999999999999999999999999999999999999999999999999987
No 11
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=100.00 E-value=2.7e-45 Score=370.10 Aligned_cols=331 Identities=19% Similarity=0.261 Sum_probs=242.2
Q ss_pred CeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCcc-------HHHHHHHHHHhHhhhccCCCCCCHHHHHH
Q 013317 19 PTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRG-------VLKAVQNVNSIIGPALVGKDPTEQTQIDN 91 (445)
Q Consensus 19 ~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~-------~~~a~~~i~~~l~p~LiG~d~~~~~~i~~ 91 (445)
..|+|+|+|++|++|||.+.... |.+++ ..+++..|++.|+|.|+|+|+.+++++++
T Consensus 50 ~~vlV~i~tddG~~G~GE~~~~~----------------ysg~~g~~~~~~~~~~~~~i~~~laP~LiG~d~~~~~~l~~ 113 (408)
T TIGR01502 50 ESLSVLLVLEDGQVVHGDCAAVQ----------------YSGAGGRDPLFLAKDFIPVIEKEVAPKLIGRDITNFKDMAE 113 (408)
T ss_pred cEEEEEEEECCCCEEEEEeecce----------------eccCccccccccHHHHHHHHHHHhhHHHcCCCccCHHHHHH
Confidence 46999999999999999543211 33332 56666778889999999999999999999
Q ss_pred HHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhC--CCcceeeeeeEEeecCCccCCCccc
Q 013317 92 FMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAG--NKTLVLPVPAFNVINGGSHADNKLA 169 (445)
Q Consensus 92 ~l~~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G--~~~~~ip~p~~~~~~gg~~~~~~~~ 169 (445)
.|. .... + .+ +..++++|||+||||+.||.+|+|||+|||..+| ..++ ++|++.+++ .... .
T Consensus 114 ~~~-~~~~--~-----~~-~~~a~kaavd~AL~D~~ak~~g~pl~~LLG~~~~~~~~~~--~vp~~~s~g-~~~~-~--- 177 (408)
T TIGR01502 114 VFE-KMTV--N-----RN-LHTAIRYGVSQALLDAAAKTRKTTMAEVIRDEYNPGAETN--AVPVFAQSG-DDRY-D--- 177 (408)
T ss_pred HHH-HHhh--c-----Cc-chhHHHHHHHHHHHHHHHHHcCCcHHHHhCcccccCCcCC--ceeEEEEee-ccCC-C---
Confidence 998 4321 1 11 4456789999999999999999999999994332 3334 455565532 1100 0
Q ss_pred ccceeeccCCcccHHHHHHHHHHH-HHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcC-CCcceEE
Q 013317 170 MQEFMILPIGASTFKEAMKMGVEV-YHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGG-YIGKIVI 247 (445)
Q Consensus 170 ~~e~~~~p~~~~~~~ea~~~~~~~-~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G-~~~~i~l 247 (445)
..++.+.++.+...++ |+.+| |+|.. ..++.+.++.+++.+++++ ...++.|
T Consensus 178 --------~~d~m~~~a~~~~~~G~~~~~K-----kvG~~-------------~~k~~~~~~~~~~ri~~lr~~g~~~~l 231 (408)
T TIGR01502 178 --------NVDKMILKEVDVLPHGLINSVE-----ELGLD-------------GEKLLEYVKWLRDRIIKLGREGYAPIF 231 (408)
T ss_pred --------CHHHHHHHHHHHHhccCcccee-----eecCC-------------HHHhhhhHHHHHHHHHHhhccCCCCeE
Confidence 0123345555555554 55543 34421 1223455666666655443 1136789
Q ss_pred EEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhh---cCCeeEEECCCCccC----HHHHHHHHHHh-
Q 013317 248 GMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFIS---DHPIVSIEDPFDQDD----WEHYAELTGKI- 319 (445)
Q Consensus 248 ~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~---~~~i~~iEdP~~~~D----~~~~~~L~~~~- 319 (445)
++|+|. ... .-++||.+++++++.++-+ +|++ |||||++++| +++|++|++++
T Consensus 232 ~vDaN~---------~~~---------~~~~~~~~~ai~~l~~l~~~~~~~~~-~iEqPv~~~d~~~~~e~la~Lr~~~~ 292 (408)
T TIGR01502 232 HIDVYG---------TIG---------EAFGVDIKAMADYIQTLAEAAKPFHL-RIEGPMDVGSRQAQIEAMADLRAELD 292 (408)
T ss_pred EEEcCC---------Ccc---------cccCCCHHHHHHHHHHHHHhCccCCe-EEecCCCCCcchhhHHHHHHHHHHhh
Confidence 999952 000 0137899999998776433 3787 9999999865 99999999984
Q ss_pred --CCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhH--HHHHHH
Q 013317 320 --GRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDT--FIADLS 395 (445)
Q Consensus 320 --~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~--~~~~la 395 (445)
+.++||++||+ ++++++++++++.+++|++|||++++||||++++++++|+++|++++++++++||.++ +++|||
T Consensus 293 ~~~~~vPI~aDEs-~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~~es~I~~aa~~Hla 371 (408)
T TIGR01502 293 GRGVDAEIVADEW-CNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTCNETNRSAEVTTHVG 371 (408)
T ss_pred cCCCCceEEecCC-CCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 11299999998 5789999999999999999999999999999999999999999999998877798765 456999
Q ss_pred hhhcCCcc--ccCCCCCchhHHHHHHHHHHHHHh
Q 013317 396 VGLATGQI--KTGAPCRSERLAKYNQLLRIEEEL 427 (445)
Q Consensus 396 ~a~~~~~~--~~G~~~~~er~~k~n~ll~i~~~l 427 (445)
+++++.++ |||.-.+.--+.++|||.|....+
T Consensus 372 aa~~~~~~l~kpg~g~d~~~~~~~ne~~r~~~~~ 405 (408)
T TIGR01502 372 MATGARQVLAKPGMGVDEGMMIVKNEMNRVLALV 405 (408)
T ss_pred HhcCCCceEecCCCCcchhHHHHHHHHHHHHHHh
Confidence 99988775 588765666799999999987754
No 12
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=100.00 E-value=7.2e-46 Score=378.97 Aligned_cols=310 Identities=16% Similarity=0.226 Sum_probs=225.6
Q ss_pred cceeEEEEEEEecCCCCCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHHHHhHhhhccCC
Q 013317 2 VTINAVKARQIFDSRGNPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNVNSIIGPALVGK 81 (445)
Q Consensus 2 ~~I~~v~~~~i~~~~g~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i~~~l~p~LiG~ 81 (445)
|||++|+...+ ..+++.++|||+|++|++|||.++.. +++ ......+.+.++|.|+|+
T Consensus 1 mkI~~v~~~~~--~~~~~~vlVri~td~G~~G~GE~~~~-------------------~~~-~~~~~~~~~~l~p~l~G~ 58 (404)
T PRK15072 1 MKIVDAEVIVT--CPGRNFVTLKITTDDGVTGLGDATLN-------------------GRE-LAVASYLQDHVCPLLIGR 58 (404)
T ss_pred CeeEEEEEEEE--CCCCcEEEEEEEeCCCCeEEEecccC-------------------Cch-HHHHHHHHHHHHHHcCCC
Confidence 69999999765 33466899999999999999864321 111 223445778899999999
Q ss_pred CCCCHHHHHHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeecCC
Q 013317 82 DPTEQTQIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVINGG 161 (445)
Q Consensus 82 d~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~gg 161 (445)
||.+++++|+.|. ... .|+++.+...|++||||||||+.||.+|+|||+||| |+.++++|+ |++..+.
T Consensus 59 d~~~~e~~~~~l~-~~~------~~~~~~~~~~a~aaID~AlwDl~gK~~g~Pl~~LLG---G~~r~~v~~--y~~~~~~ 126 (404)
T PRK15072 59 DAHRIEDIWQYLY-RGA------YWRRGPVTMSAIAAVDMALWDIKAKAAGMPLYQLLG---GASREGVMV--YGHANGR 126 (404)
T ss_pred ChhHHHHHHHHHH-Hhc------ccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcC---CCccCceEE--EEeCCCC
Confidence 9999999999997 311 122233445799999999999999999999999999 976777776 4432111
Q ss_pred ccCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcc----cCCCCC--CCCCc-------------
Q 013317 162 SHADNKLAMQEFMILPIGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATN----VGDEGG--FAPNI------------- 222 (445)
Q Consensus 162 ~~~~~~~~~~e~~~~p~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~----~~~~g~--~~~~~------------- 222 (445)
+. .+..+++.+...+||+++| +|+|..... ...+.+ +.+..
T Consensus 127 -------~~---------~~~~~~a~~~~~~Gf~~~K----iKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 186 (404)
T PRK15072 127 -------DI---------DELLDDVARHLELGYKAIR----VQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTE 186 (404)
T ss_pred -------CH---------HHHHHHHHHHHHcCCCEEE----EecCCCCcccccccccccccccccccccccccccccccH
Confidence 11 1234556666667787764 455421000 000000 00000
Q ss_pred ---cCchHHHHHHHHHHHhcCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeE
Q 013317 223 ---QESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVS 299 (445)
Q Consensus 223 ---~~~~~~l~~v~~ai~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~ 299 (445)
+.+.+.++++|++ +| +++.|++|+ |+.||.++++++.+ .+++|++.|
T Consensus 187 ~~~~~~~~~v~avre~---~G--~~~~l~vDa------------------------N~~w~~~~A~~~~~-~l~~~~l~~ 236 (404)
T PRK15072 187 KYLRFVPKLFEAVRNK---FG--FDLHLLHDV------------------------HHRLTPIEAARLGK-SLEPYRLFW 236 (404)
T ss_pred HHHHHHHHHHHHHHhh---hC--CCceEEEEC------------------------CCCCCHHHHHHHHH-hccccCCcE
Confidence 1112344444443 45 589999999 46789999999854 578999999
Q ss_pred EECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEe
Q 013317 300 IEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMA 379 (445)
Q Consensus 300 iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~ 379 (445)
||||++++|+++|++|+++++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|+++++
T Consensus 237 iEeP~~~~d~~~~~~L~~~~~--iPIa~dEs~-~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~ 313 (404)
T PRK15072 237 LEDPTPAENQEAFRLIRQHTT--TPLAVGEVF-NSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGS 313 (404)
T ss_pred EECCCCccCHHHHHHHHhcCC--CCEEeCcCc-cCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcCCceee
Confidence 999999999999999999998 999999985 56999999999999999999999999999999999999999999875
Q ss_pred cCCCCCChhHHHHHHHhhh
Q 013317 380 SHRSGETEDTFIADLSVGL 398 (445)
Q Consensus 380 ~~~~~et~~~~~~~la~a~ 398 (445)
++++.++..++++.++++.
T Consensus 314 h~~~~~s~l~~aa~~hlaa 332 (404)
T PRK15072 314 HGPTDLSPVCMAAALHFDL 332 (404)
T ss_pred ccCcccchHHHHHHHHHHH
Confidence 5444467766544444433
No 13
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=2.2e-45 Score=369.17 Aligned_cols=292 Identities=17% Similarity=0.204 Sum_probs=219.0
Q ss_pred ceeEEEEEEEecC------C------CCCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHH
Q 013317 3 TINAVKARQIFDS------R------GNPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNV 70 (445)
Q Consensus 3 ~I~~v~~~~i~~~------~------g~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i 70 (445)
||++|+++.+.-. . ....|+|+|+| +|++|||.+.. + ......+
T Consensus 1 ~I~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~~-~G~~G~Ge~~~--------------------~---~~~~~~i 56 (352)
T cd03328 1 AVERVEARAYTVPTDAPEADGTLAWDATTLVLVEVRA-GGRTGLGYTYA--------------------D---AAAAALV 56 (352)
T ss_pred CeeEEEEEEEEccCCCcccCCccceeeeeEEEEEEEc-CCcEEEeCCCC--------------------h---HHHHHHH
Confidence 6899988766311 1 12458899998 79999984321 1 2233457
Q ss_pred HHhHhhhccCCCCCCHHHHHHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCccee
Q 013317 71 NSIIGPALVGKDPTEQTQIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVL 150 (445)
Q Consensus 71 ~~~l~p~LiG~d~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~i 150 (445)
++.++|.|+|+||.+++++|+.|++.... +++++....|++||||||||+.||.+|+|||+||| | .++++
T Consensus 57 ~~~~~p~liG~d~~~~~~l~~~~~~~~~~------~~~~g~~~~a~aaiD~AlwDl~gK~~g~Pv~~LLG---g-~~~~v 126 (352)
T cd03328 57 DGLLAPVVEGRDALDPPAAWEAMQRAVRN------AGRPGVAAMAISAVDIALWDLKARLLGLPLARLLG---R-AHDSV 126 (352)
T ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHh------cCCccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhc---C-CCCCe
Confidence 77899999999999999999999832221 22344445799999999999999999999999999 8 45677
Q ss_pred eeeeEEeecCCccCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHH
Q 013317 151 PVPAFNVINGGSHADNKLAMQEFMILPIGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFE 230 (445)
Q Consensus 151 p~p~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~ 230 (445)
|+ |.+ ++... . ..++..+++.+...+||+++| .|+|. +.+.+.+.++
T Consensus 127 ~~--y~s--~~~~~---~---------~~e~~~~~a~~~~~~Gf~~~K----ikvg~-------------~~~~d~~~v~ 173 (352)
T cd03328 127 PV--YGS--GGFTS---Y---------DDDRLREQLSGWVAQGIPRVK----MKIGR-------------DPRRDPDRVA 173 (352)
T ss_pred EE--EEe--cCCCC---C---------CHHHHHHHHHHHHHCCCCEEE----eecCC-------------CHHHHHHHHH
Confidence 76 433 12110 0 012345666666667777664 34431 1122345555
Q ss_pred HHHHHHHhcCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHH
Q 013317 231 LLKTAIAKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWE 310 (445)
Q Consensus 231 ~v~~ai~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~ 310 (445)
.+|++ +| +++.|++|+ |+.||.++++++. +.+++|++.|||||++++|++
T Consensus 174 ~vRe~---~G--~~~~l~vDa------------------------N~~~~~~~A~~~~-~~l~~~~~~~~EeP~~~~d~~ 223 (352)
T cd03328 174 AARRA---IG--PDAELFVDA------------------------NGAYSRKQALALA-RAFADEGVTWFEEPVSSDDLA 223 (352)
T ss_pred HHHHH---cC--CCCeEEEEC------------------------CCCCCHHHHHHHH-HHHHHhCcchhhCCCChhhHH
Confidence 55544 45 589999999 5678999999985 457999999999999999999
Q ss_pred HHHHHHHH--hCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 013317 311 HYAELTGK--IGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETED 388 (445)
Q Consensus 311 ~~~~L~~~--~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~ 388 (445)
+|++|+++ ++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|++++ +|.. .
T Consensus 224 ~~~~l~~~~~~~--iPIa~gE~~-~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi~~~-~h~~----~ 295 (352)
T cd03328 224 GLRLVRERGPAG--MDIAAGEYA-YTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHVDLS-AHCA----P 295 (352)
T ss_pred HHHHHHhhCCCC--CCEEecccc-cCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeec-cCch----H
Confidence 99999999 76 999999984 6799999999999999999999999999999999999999999986 4532 3
Q ss_pred HHHHHHHhhhc
Q 013317 389 TFIADLSVGLA 399 (445)
Q Consensus 389 ~~~~~la~a~~ 399 (445)
+..+|++.++.
T Consensus 296 ~a~~hl~aa~~ 306 (352)
T cd03328 296 ALHAHVACAVP 306 (352)
T ss_pred HHHHHHHHhCC
Confidence 45677777653
No 14
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=1.6e-45 Score=368.94 Aligned_cols=293 Identities=21% Similarity=0.271 Sum_probs=220.9
Q ss_pred ceeEEEEEEEecCCCCCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHHHHhHhhhccCCC
Q 013317 3 TINAVKARQIFDSRGNPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNVNSIIGPALVGKD 82 (445)
Q Consensus 3 ~I~~v~~~~i~~~~g~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i~~~l~p~LiG~d 82 (445)
||++|+.... .++|||+||+|++|||.+... ..+...+++.|+|.|+|+|
T Consensus 1 kI~~i~~~~~-------~v~V~i~td~Gi~G~GE~~~~-----------------------~~~~~~i~~~l~p~liG~d 50 (341)
T cd03327 1 KIKSVRTRVG-------WLFVEIETDDGTVGYANTTGG-----------------------PVACWIVDQHLARFLIGKD 50 (341)
T ss_pred CeEEEEEEEE-------EEEEEEEECCCCeEEecCCCc-----------------------hHHHHHHHHHHHHHhCCCC
Confidence 7999988542 589999999999999864210 1123457788999999999
Q ss_pred CCCHHHHHHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeecCCc
Q 013317 83 PTEQTQIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVINGGS 162 (445)
Q Consensus 83 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~gg~ 162 (445)
|.+++++|+.|+ .... +++++++...|++||||||||+.||.+|+|||+||| |+.++++|+ |.+.. +.
T Consensus 51 p~~~~~~~~~l~-~~~~-----~~~~~~~~~~a~said~AlwDl~gK~~g~Pv~~LLG---G~~r~~i~~--y~~~~-~~ 118 (341)
T cd03327 51 PSDIEKLWDQMY-RATL-----AYGRKGIAMAAISAVDLALWDLLGKIRGEPVYKLLG---GRTRDKIPA--YASGL-YP 118 (341)
T ss_pred chHHHHHHHHHH-hhcc-----ccCCccHHHhHHHHHHHHHHHhcccccCCCHHHHcC---CCcCCceEE--EEECC-CC
Confidence 999999999997 3211 123445555799999999999999999999999999 987777876 43211 11
Q ss_pred cCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcCCC
Q 013317 163 HADNKLAMQEFMILPIGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYI 242 (445)
Q Consensus 163 ~~~~~~~~~e~~~~p~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G~~ 242 (445)
. + .++..+++.+...+||+++| .|+|... ..+ ..+.+.+.+.++++|+++ |
T Consensus 119 ~-----~---------~~~~~~~a~~~~~~Gf~~~K----ikvg~~~----~~~--~~~~~~d~~~v~avr~~~---g-- 169 (341)
T cd03327 119 T-----D---------LDELPDEAKEYLKEGYRGMK----MRFGYGP----SDG--HAGLRKNVELVRAIREAV---G-- 169 (341)
T ss_pred C-----C---------HHHHHHHHHHHHHcCCCEEE----ECCCCCC----Ccc--hHHHHHHHHHHHHHHHHh---C--
Confidence 0 1 12234566666667787664 3444200 000 011233445555555544 5
Q ss_pred cceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCc
Q 013317 243 GKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRH 322 (445)
Q Consensus 243 ~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~ 322 (445)
+++.|++|+ |+.||.++++++. +.+++|++.|||||++++|+++|++|+++++
T Consensus 170 ~~~~l~vDa------------------------n~~~~~~~A~~~~-~~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~-- 222 (341)
T cd03327 170 YDVDLMLDC------------------------YMSWNLNYAIKMA-RALEKYELRWIEEPLIPDDIEGYAELKKATG-- 222 (341)
T ss_pred CCCcEEEEC------------------------CCCCCHHHHHHHH-HHhhhcCCccccCCCCccCHHHHHHHHhcCC--
Confidence 589999999 4668899999875 5578999999999999999999999999998
Q ss_pred eEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhc
Q 013317 323 VQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLA 399 (445)
Q Consensus 323 ~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~ 399 (445)
+||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|++++ +|.. ..+.+||+.++.
T Consensus 223 ~pIa~gE~~-~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~-~h~~----~~a~~hlaaa~~ 293 (341)
T cd03327 223 IPISTGEHE-YTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVV-PHAS----QIYNYHFIMSEP 293 (341)
T ss_pred CCeEeccCc-cCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeec-cccH----HHHHHHHHHhCc
Confidence 999999985 5699999999999999999999999999999999999999999965 6642 345677777654
No 15
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=3.3e-44 Score=358.68 Aligned_cols=326 Identities=18% Similarity=0.254 Sum_probs=223.9
Q ss_pred CeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccH----HHHHHHHHHhHhhhccCCCCCCHHHHHHHHH
Q 013317 19 PTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGV----LKAVQNVNSIIGPALVGKDPTEQTQIDNFMV 94 (445)
Q Consensus 19 ~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~----~~a~~~i~~~l~p~LiG~d~~~~~~i~~~l~ 94 (445)
..++|+|+||+|++|||.+.....++ +.+++. ..+...|++.|+|.|+|+||.+++++|+.|+
T Consensus 13 ~~vlV~I~tddG~~G~GEa~~~~~~~-------------~~g~~~~~~~~~~~~~i~~~lap~LiG~d~~~i~~i~~~m~ 79 (369)
T cd03314 13 EAISVMLVLEDGQVAVGDCAAVQYSG-------------AGGRDPLFLAADFIPVIEKVIAPALVGRDVANFRPAAAVLD 79 (369)
T ss_pred cEEEEEEEECCCCEEEEecccccccC-------------cCCcccccchHHHHHHHHHhhhhHhcCCCHHHHHHHHHHHH
Confidence 57999999999999999643111111 112212 3345568888999999999999999999997
Q ss_pred HhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCC---CcceeeeeeEEeecCCccCCCccccc
Q 013317 95 QQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGN---KTLVLPVPAFNVINGGSHADNKLAMQ 171 (445)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~---~~~~ip~p~~~~~~gg~~~~~~~~~~ 171 (445)
+.+.. | ......++||||+||||+.||.+|+|||+||| |. .+.+.++|+|.+++ +.. ..
T Consensus 80 ~~~~~-------g-~~~~~aaksAIDiALwDl~gK~~g~Pv~~LLG---g~~~~g~~r~~v~~y~~~~-~~~------~~ 141 (369)
T cd03314 80 KMRLD-------G-NRLHTAIRYGVSQALLDAVALAQRRTMAEVLC---DEYGLPLADEPVPIFAQSG-DDR------YI 141 (369)
T ss_pred HHhhc-------C-CcchhhHHHHHHHHHHHHHHHHhCCcHHHHcC---CcccCCCcccceEEEEEec-Ccc------cc
Confidence 32110 1 12334688999999999999999999999998 65 21234455565432 100 00
Q ss_pred ceeeccCCcccHHHHHHHHHHH-HHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcCCCcceEEEEe
Q 013317 172 EFMILPIGASTFKEAMKMGVEV-YHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMD 250 (445)
Q Consensus 172 e~~~~p~~~~~~~ea~~~~~~~-~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G~~~~i~l~vD 250 (445)
+ .++..+++.+...++ |+.+| .| |....++- .. ....++.+ +++|.+| +++.|++|
T Consensus 142 ~------~~~~~~~~~~~~~~~~~~~~k----~k-G~~~~K~~------~~---~~~~~~~v-~avr~~G--~~~~l~vD 198 (369)
T cd03314 142 N------VDKMILKGADVLPHALINNVE----EK-GPKGEKLL------EY---VKWLSDRI-RKLGRPG--YHPILHID 198 (369)
T ss_pred c------HHHHHHHHHhhhhhhhhhhHh----hc-CccHHHHH------Hh---HHHHHHHH-HHHhhcC--CCCEEEEE
Confidence 0 011122333332222 44433 22 43211110 01 12223344 2333445 57999999
Q ss_pred ccccccccccCcceeecccCCCCCCCCCc--ChHHHHHHHHHhhhcC-C--eeEEECCCCccC----HHHHHHHHHHh--
Q 013317 251 VAASEFYDRKDKTYDLNFKEENNDGSQKV--SGDGLKNVYRSFISDH-P--IVSIEDPFDQDD----WEHYAELTGKI-- 319 (445)
Q Consensus 251 ~~a~~~~~~~~~~y~~~~~~~~~~~n~~~--t~~~~i~~~~~~~~~~-~--i~~iEdP~~~~D----~~~~~~L~~~~-- 319 (445)
+|. .| .|.| |.+++++++.. ++++ + +.|||||++++| +++|++|++++
T Consensus 199 aN~---------~w-----------~~~~~~~~~~A~~~~~~-Le~~~~~~~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~ 257 (369)
T cd03314 199 VYG---------TI-----------GQAFDPDPDRAADYLAT-LEEAAAPFPLRIEGPMDAGSREAQIERMAALRAELDR 257 (369)
T ss_pred cCC---------cc-----------ccccCCCHHHHHHHHHH-HHHhcCCCcEEEecCCCCCcchhhHHHHHHHHHHhhc
Confidence 952 11 1346 88999998655 5654 3 789999999865 89999999995
Q ss_pred ---CCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhH--HHHHH
Q 013317 320 ---GRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDT--FIADL 394 (445)
Q Consensus 320 ---~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~--~~~~l 394 (445)
+ +||++||+. .++++++++++.+++|++|+|++|+||||++++++++|+++|++++++|+++|+.++ +++|+
T Consensus 258 ~~~~--iPIa~dEs~-~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~~~es~I~~aa~lHl 334 (369)
T cd03314 258 RGVG--VRIVADEWC-NTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSCNETDISARVTVHV 334 (369)
T ss_pred CCCC--ceEEecCCc-CCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHHH
Confidence 6 999999984 679999999999999999999999999999999999999999999988766788776 56689
Q ss_pred HhhhcCCccc--cCCCCCchhHHHHHHHHH
Q 013317 395 SVGLATGQIK--TGAPCRSERLAKYNQLLR 422 (445)
Q Consensus 395 a~a~~~~~~~--~G~~~~~er~~k~n~ll~ 422 (445)
+.++++.|+. +|.--+..-+...|++-|
T Consensus 335 aaa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (369)
T cd03314 335 ALATRADQMLAKPGMGVDEGLMIVTNEMNR 364 (369)
T ss_pred HHhcCCcceeeCCCCCccchHHHHHHHHHH
Confidence 8888887754 666555556677777654
No 16
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=100.00 E-value=9.7e-45 Score=365.85 Aligned_cols=288 Identities=16% Similarity=0.226 Sum_probs=218.8
Q ss_pred ceeEEEEEEEecCCCCCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHHHHhHhhhccCCC
Q 013317 3 TINAVKARQIFDSRGNPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNVNSIIGPALVGKD 82 (445)
Q Consensus 3 ~I~~v~~~~i~~~~g~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i~~~l~p~LiG~d 82 (445)
||++|+.... +.+++.++|+|+|++|++|||+++.. +. .......+++.|+|.|+|+|
T Consensus 1 kI~~ie~~~~--~~~~~~vlV~v~td~G~~G~GE~~~~-------------------~~-~~~~~~~i~~~l~p~l~G~d 58 (361)
T cd03322 1 KITAIEVIVT--CPGRNFVTLKITTDQGVTGLGDATLN-------------------GR-ELAVKAYLREHLKPLLIGRD 58 (361)
T ss_pred CeEEEEEEEE--CCCCCEEEEEEEeCCCCeEEEecccC-------------------CC-HHHHHHHHHHHHHHHcCCCC
Confidence 7999998544 33466799999999999999865321 00 12334557788999999999
Q ss_pred CCCHHHHHHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeecCCc
Q 013317 83 PTEQTQIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVINGGS 162 (445)
Q Consensus 83 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~gg~ 162 (445)
|.+++.+|+.|. ... . |+++.....|++||||||||+.||.+|+|||+||| |..++++|+ |++.. +.
T Consensus 59 ~~~~~~~~~~~~-~~~-~-----~~~~~~~~~a~aaid~AlwDl~gk~~g~Pl~~LLG---g~~r~~v~~--ya~~~-~~ 125 (361)
T cd03322 59 ANRIEDIWQYLY-RGA-Y-----WRRGPVTMNAIAAVDMALWDIKGKAAGMPLYQLLG---GKSRDGIMV--YSHAS-GR 125 (361)
T ss_pred hhHHHHHHHHHH-Hhc-c-----cCCchHHHHHHHHHHHHHHHHhHhhcCCcHHHHcC---CCccCeeeE--EEeCC-CC
Confidence 999999999997 311 0 11222334699999999999999999999999999 977777777 43321 10
Q ss_pred cCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcCCC
Q 013317 163 HADNKLAMQEFMILPIGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYI 242 (445)
Q Consensus 163 ~~~~~~~~~e~~~~p~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G~~ 242 (445)
+. ++..+++.+...+||+++|. | ..+.++++|++ +|
T Consensus 126 ------~~---------~~~~~~a~~~~~~Gf~~~Ki----K--------------------v~~~v~avre~---~G-- 161 (361)
T cd03322 126 ------DI---------PELLEAVERHLAQGYRAIRV----Q--------------------LPKLFEAVREK---FG-- 161 (361)
T ss_pred ------CH---------HHHHHHHHHHHHcCCCeEee----C--------------------HHHHHHHHHhc---cC--
Confidence 11 12334555555556665541 1 03345445444 35
Q ss_pred cceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCc
Q 013317 243 GKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRH 322 (445)
Q Consensus 243 ~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~ 322 (445)
+++.|++|+ |+.||.+++++++. .+++|++.|||||++++|+++|++|+++++
T Consensus 162 ~~~~l~vDa------------------------N~~w~~~~A~~~~~-~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~-- 214 (361)
T cd03322 162 FEFHLLHDV------------------------HHRLTPNQAARFGK-DVEPYRLFWMEDPTPAENQEAFRLIRQHTA-- 214 (361)
T ss_pred CCceEEEEC------------------------CCCCCHHHHHHHHH-HhhhcCCCEEECCCCcccHHHHHHHHhcCC--
Confidence 579999999 56789999999854 578999999999999999999999999998
Q ss_pred eEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHH--HHHHHhh
Q 013317 323 VQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTF--IADLSVG 397 (445)
Q Consensus 323 ~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~--~~~la~a 397 (445)
+||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|++++++++..++.++. .+||+.+
T Consensus 215 ~pia~gE~~-~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~i~~aa~~~laa~ 290 (361)
T cd03322 215 TPLAVGEVF-NSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPTDLSPVGMAAALHLDLW 290 (361)
T ss_pred CCEEeccCC-cCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCCCcchHHHHHHHHHHhh
Confidence 999999984 6799999999999999999999999999999999999999999987555444676654 4455444
No 17
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=7.9e-44 Score=358.74 Aligned_cols=296 Identities=21% Similarity=0.277 Sum_probs=223.8
Q ss_pred cceeEEEEEEEec--------CCC----CCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHH
Q 013317 2 VTINAVKARQIFD--------SRG----NPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQN 69 (445)
Q Consensus 2 ~~I~~v~~~~i~~--------~~g----~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~ 69 (445)
|||++|+++.+.- +.+ ...|+|+|+|++|++|+|.++. |.+++...+...
T Consensus 1 ~~I~~v~~~~~~~pl~~~~~~~~~~~~~~~~v~V~v~t~~G~~G~Ge~~~------------------~~~~~~~~~~~~ 62 (355)
T cd03321 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGVTGHSYLFT------------------YTPAALKSLKQL 62 (355)
T ss_pred CeeEEEEEEEEEccCCCccccccceeccCcEEEEEEEECCCCeEEEeeec------------------CCCCcHHHHHHH
Confidence 5899999987741 222 2569999999999999986432 234344444444
Q ss_pred HHHhHhhhccCCCCCCHHHHHHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcce
Q 013317 70 VNSIIGPALVGKDPTEQTQIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLV 149 (445)
Q Consensus 70 i~~~l~p~LiG~d~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ 149 (445)
+ +.++|.|+|+++ +++++++.+.+.+.. +|+.++...|++||||||||+.||.+|+|||+||| |. +++
T Consensus 63 ~-~~l~p~LiG~~~-~~~~~~~~~~~~~~~------~~~~~~~~~a~aaid~AlwDl~gk~~g~Pv~~LlG---g~-~~~ 130 (355)
T cd03321 63 L-DDMAALLVGEPL-APAELERALAKRFRL------LGYTGLVRMAAAGIDMAAWDALAKVHGLPLAKLLG---GN-PRP 130 (355)
T ss_pred H-HHHHHHhCCCCC-ChHHHHHHHHHHHHh------hcCCcHHHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CC-CCC
Confidence 4 469999999986 788888888733211 12334445799999999999999999999999999 86 455
Q ss_pred eeeeeEEeecCCccCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHH
Q 013317 150 LPVPAFNVINGGSHADNKLAMQEFMILPIGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGF 229 (445)
Q Consensus 150 ip~p~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l 229 (445)
+|+ |.++ +.. + .++.++++.+...+||+++| .|+|. .+.+.+.+.+
T Consensus 131 v~~--y~s~--~~~-----~---------~~~~~~~a~~~~~~Gf~~~K----iKvg~------------~~~~~d~~~v 176 (355)
T cd03321 131 VQA--YDSH--GLD-----G---------AKLATERAVTAAEEGFHAVK----TKIGY------------PTADEDLAVV 176 (355)
T ss_pred eeE--EEeC--CCC-----h---------HHHHHHHHHHHHHhhhHHHh----hhcCC------------CChHhHHHHH
Confidence 555 5442 210 0 12345677777788998875 35442 1123335555
Q ss_pred HHHHHHHHhcCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCH
Q 013317 230 ELLKTAIAKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDW 309 (445)
Q Consensus 230 ~~v~~ai~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~ 309 (445)
+++|+++ | +++.|++|+ |+.||.++++++++ .+++|++.|||||++++|+
T Consensus 177 ~air~~~---g--~~~~l~vDa------------------------N~~~~~~~A~~~~~-~l~~~~i~~iEeP~~~~d~ 226 (355)
T cd03321 177 RSIRQAV---G--DGVGLMVDY------------------------NQSLTVPEAIERGQ-ALDQEGLTWIEEPTLQHDY 226 (355)
T ss_pred HHHHHhh---C--CCCEEEEeC------------------------CCCcCHHHHHHHHH-HHHcCCCCEEECCCCCcCH
Confidence 5555544 5 589999999 46789999999865 4789999999999999999
Q ss_pred HHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhH
Q 013317 310 EHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~ 389 (445)
++|++|+++++ +||++||++ .++++++++++.+++|++|+|++++||+|++++++++|+++|++++ +|... +
T Consensus 227 ~~~~~l~~~~~--ipia~~E~~-~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~-~h~~~----~ 298 (355)
T cd03321 227 EGHARIASALR--TPVQMGENW-LGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPMS-SHLFQ----E 298 (355)
T ss_pred HHHHHHHHhcC--CCEEEcCCC-cCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeec-ccchH----H
Confidence 99999999998 999999985 6799999999999999999999999999999999999999999975 66432 2
Q ss_pred HHHHHHhhhc
Q 013317 390 FIADLSVGLA 399 (445)
Q Consensus 390 ~~~~la~a~~ 399 (445)
..+|++.+.+
T Consensus 299 ~~~h~~aa~~ 308 (355)
T cd03321 299 ISAHLLAVTP 308 (355)
T ss_pred HHHHHHHhCC
Confidence 3578876643
No 18
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=6.8e-44 Score=360.86 Aligned_cols=300 Identities=19% Similarity=0.244 Sum_probs=225.2
Q ss_pred ceeEEEEEEEec--------CC----CCCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHH
Q 013317 3 TINAVKARQIFD--------SR----GNPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNV 70 (445)
Q Consensus 3 ~I~~v~~~~i~~--------~~----g~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i 70 (445)
+|++|+++.+.. +. .+..++|+|+|++|++|||.+.... .+.|.+++....+..+
T Consensus 1 ~I~~i~~~~~~lpl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~GE~~~~~-------------~~~~~~~~~~~~~~~l 67 (365)
T cd03318 1 KIEAIETTIVDLPTRRPHQFAGTTMHTQSLVLVRLTTSDGVVGIGEATTPG-------------GPAWGGESPETIKAII 67 (365)
T ss_pred CeEEEEEEEEeccccCceEEeeeeEeecceEEEEEEECCCCeEEEecCCCC-------------CCccCCCCHHHHHHHH
Confidence 588888876631 11 1356899999999999999653211 0124455556666678
Q ss_pred HHhHhhhccCCCCCCHHHHHHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCccee
Q 013317 71 NSIIGPALVGKDPTEQTQIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVL 150 (445)
Q Consensus 71 ~~~l~p~LiG~d~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~i 150 (445)
++.+.|.|+|+|+.+++++|+.|.+.+.+ ...|++||||||||+.||.+|+|+|+||| |..++++
T Consensus 68 ~~~~~~~l~G~~~~~~~~~~~~l~~~~~~------------~~~a~said~AlwDl~gK~~g~Pl~~LLG---g~~~~~v 132 (365)
T cd03318 68 DRYLAPLLIGRDATNIGAAMALLDRAVAG------------NLFAKAAIEMALLDAQGRRLGLPVSELLG---GRVRDSL 132 (365)
T ss_pred HHhhHHHHcCCChHHHHHHHHHHHHHhcC------------CccHHHHHHHHHHHHHHhHcCCCHHHHcC---CCcCCce
Confidence 88899999999999999999988732221 13589999999999999999999999999 9767777
Q ss_pred eeeeEEeecCCccCCCcccccceeeccCCcccHHHHHHHHHHH-HHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHH
Q 013317 151 PVPAFNVINGGSHADNKLAMQEFMILPIGASTFKEAMKMGVEV-YHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGF 229 (445)
Q Consensus 151 p~p~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~ea~~~~~~~-~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l 229 (445)
|++ .++..+. . .+..+++.+...+| |+++| .|+|. .+.+.+.+.+
T Consensus 133 ~~~--~~~~~~~-------~---------~~~~~~~~~~~~~G~f~~~K----iKvg~------------~~~~~d~~~v 178 (365)
T cd03318 133 PVA--WTLASGD-------T---------ERDIAEAEEMLEAGRHRRFK----LKMGA------------RPPADDLAHV 178 (365)
T ss_pred EEE--EEEeCCC-------H---------HHHHHHHHHHHhCCCceEEE----EEeCC------------CChHHHHHHH
Confidence 764 3222110 0 12234555555566 76553 45441 1112234444
Q ss_pred HHHHHHHHhcCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCH
Q 013317 230 ELLKTAIAKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDW 309 (445)
Q Consensus 230 ~~v~~ai~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~ 309 (445)
+++|++ .| +++.|++|+ |+.||.+++++++ +.++++++.|||||++++|+
T Consensus 179 ~avr~~---~g--~~~~l~iDa------------------------N~~~~~~~A~~~~-~~l~~~~~~~iEeP~~~~~~ 228 (365)
T cd03318 179 EAIAKA---LG--DRASVRVDV------------------------NQAWDESTAIRAL-PRLEAAGVELIEQPVPRENL 228 (365)
T ss_pred HHHHHH---cC--CCcEEEEEC------------------------CCCCCHHHHHHHH-HHHHhcCcceeeCCCCcccH
Confidence 444443 35 579999999 4678899999985 45789999999999999999
Q ss_pred HHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhH
Q 013317 310 EHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+++++|+++++ +||++||+ +.++++++++++.+++|++|+|++++||||++++++++|+++|++++++|+ .|+.++
T Consensus 229 ~~~~~l~~~~~--~pia~dE~-~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~-~~s~i~ 304 (365)
T cd03318 229 DGLARLRSRNR--VPIMADES-VSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTM-LESSIG 304 (365)
T ss_pred HHHHHHHhhcC--CCEEcCcc-cCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCc-chhHHH
Confidence 99999999988 99999998 467999999999999999999999999999999999999999999987764 588766
Q ss_pred HH--HHHHhhh
Q 013317 390 FI--ADLSVGL 398 (445)
Q Consensus 390 ~~--~~la~a~ 398 (445)
.. +|++.++
T Consensus 305 ~aa~~hlaaa~ 315 (365)
T cd03318 305 TAASAHLFATL 315 (365)
T ss_pred HHHHHHHHHhC
Confidence 54 4555543
No 19
>PRK14017 galactonate dehydratase; Provisional
Probab=100.00 E-value=5.9e-44 Score=362.91 Aligned_cols=301 Identities=13% Similarity=0.126 Sum_probs=219.6
Q ss_pred cceeEEEEEEEecCCCCCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHHHHhHhhhccCC
Q 013317 2 VTINAVKARQIFDSRGNPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNVNSIIGPALVGK 81 (445)
Q Consensus 2 ~~I~~v~~~~i~~~~g~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i~~~l~p~LiG~ 81 (445)
|||++|+++.+ . ..+++|+|+|++|++|||.++.+. +.......+ +.++|.|+|+
T Consensus 1 mkI~~i~~~~~-~---~~~vlV~v~t~dG~~G~GE~~~~~--------------------~~~~~~~~~-~~~~p~l~G~ 55 (382)
T PRK14017 1 MKITKLETFRV-P---PRWLFLKIETDEGIVGWGEPVVEG--------------------RARTVEAAV-HELADYLIGK 55 (382)
T ss_pred CeEEEEEEEEE-C---CCEEEEEEEECCCCeEEeccccCC--------------------chHHHHHHH-HHHHHHhCCC
Confidence 69999999877 1 135899999999999998654211 012222334 4699999999
Q ss_pred CCCCHHHHHHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeecCC
Q 013317 82 DPTEQTQIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVINGG 161 (445)
Q Consensus 82 d~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~gg 161 (445)
||.+++++|+.|+ .... ++.+.....|++||||||||+.||.+|+|||+||| |+.++++|+ |.+++++
T Consensus 56 d~~~~~~~~~~l~-~~~~------~~~~~~~~~A~aaid~AlwDl~gK~~g~Pv~~LLG---g~~r~~i~~--~~~~~~~ 123 (382)
T PRK14017 56 DPRRIEDHWQVMY-RGGF------YRGGPILMSAIAGIDQALWDIKGKALGVPVHELLG---GLVRDRIRV--YSWIGGD 123 (382)
T ss_pred CHHHHHHHHHHHH-Hhcc------cCCchHHhhHHHHHHHHHHHHhhhhcCCcHHHHcC---CCccceeeE--eEeCCCC
Confidence 9999999999987 3110 11122234699999999999999999999999999 976677776 4332211
Q ss_pred ccCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcCC
Q 013317 162 SHADNKLAMQEFMILPIGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGY 241 (445)
Q Consensus 162 ~~~~~~~~~~e~~~~p~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G~ 241 (445)
+. ++..+++.+...+||+.+| .|+|.. .+..++ ..+.+.+.+.++++|++ .|
T Consensus 124 -------~~---------~~~~~~a~~~~~~Gf~~~K----iKv~~~---~~~~~~-~~~~~~d~~~i~avr~~---~g- 175 (382)
T PRK14017 124 -------RP---------ADVAEAARARVERGFTAVK----MNGTEE---LQYIDS-PRKVDAAVARVAAVREA---VG- 175 (382)
T ss_pred -------CH---------HHHHHHHHHHHHcCCCEEE----EcCcCC---cccccc-HHHHHHHHHHHHHHHHH---hC-
Confidence 11 2234556666666777664 343310 000000 00112234445445444 35
Q ss_pred CcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCC
Q 013317 242 IGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGR 321 (445)
Q Consensus 242 ~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~ 321 (445)
+++.|++|+ |+.||.+++++++. .++++++.|||||++++|+++|++|+++++
T Consensus 176 -~~~~l~vDa------------------------N~~w~~~~A~~~~~-~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~- 228 (382)
T PRK14017 176 -PEIGIGVDF------------------------HGRVHKPMAKVLAK-ELEPYRPMFIEEPVLPENAEALPEIAAQTS- 228 (382)
T ss_pred -CCCeEEEEC------------------------CCCCCHHHHHHHHH-hhcccCCCeEECCCCcCCHHHHHHHHhcCC-
Confidence 589999999 56789999999854 578999999999999999999999999998
Q ss_pred ceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhH--HHHHHHhhh
Q 013317 322 HVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDT--FIADLSVGL 398 (445)
Q Consensus 322 ~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~--~~~~la~a~ 398 (445)
+||++||+ +.++++++++++.+++|++|+|++++||||++++++++|+++|++++++++ .+ .++ +.+||+.+.
T Consensus 229 -~pIa~dEs-~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~-~~-~i~~aa~~hl~aa~ 303 (382)
T PRK14017 229 -IPIATGER-LFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP-LG-PIALAACLQVDAVS 303 (382)
T ss_pred -CCEEeCCc-cCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCC-CC-HHHHHHHHHHHHhC
Confidence 99999998 467999999999999999999999999999999999999999999876654 34 444 455665554
No 20
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=100.00 E-value=1.4e-43 Score=358.81 Aligned_cols=289 Identities=21% Similarity=0.224 Sum_probs=216.4
Q ss_pred CCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHHHHhHhhhccCCCCCCHHHHHHHHHHhh
Q 013317 18 NPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNVNSIIGPALVGKDPTEQTQIDNFMVQQL 97 (445)
Q Consensus 18 ~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~~~i~~~l~~~l 97 (445)
.+.++|||+|++|++|||++.... .+.|.+++.......+++.++|.|+|+|+.+++++++.|.+.+
T Consensus 27 ~~~~~V~v~t~~G~~G~Ge~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~ 93 (368)
T TIGR02534 27 QTLVLVRIRTEDGVIGYGEGTTIG-------------GLWWGGESPETIKANIDTYLAPVLVGRDATEIAAIMADLEKVV 93 (368)
T ss_pred ccEEEEEEEECCCCeEEEecCCCC-------------CCccCCCCHHHHHHHHHHhhHHHHcCCChhhHHHHHHHHHHHh
Confidence 467999999999999999653211 0124455566666677778999999999999999998887322
Q ss_pred ccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeecCCccCCCcccccceeecc
Q 013317 98 DGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVINGGSHADNKLAMQEFMILP 177 (445)
Q Consensus 98 ~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~gg~~~~~~~~~~e~~~~p 177 (445)
.+ ...|++|||+||||+.||.+|+|+|+||| |..++++|++. ++..+ +.
T Consensus 94 ~~------------~~~a~said~AlwDl~gK~~g~Pv~~LLG---g~~r~~v~~~~--~~~~~-------~~------- 142 (368)
T TIGR02534 94 AG------------NRFAKAAVDTALHDAQARRLGVPVSELLG---GRVRDSVDVTW--TLASG-------DT------- 142 (368)
T ss_pred cC------------CchHHHHHHHHHHHHHHHHcCCcHHHHhC---CCCCCceEEEE--EEeCC-------CH-------
Confidence 11 12489999999999999999999999999 97777777643 22111 00
Q ss_pred CCcccHHHHHHHH-HHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcCCCcceEEEEecccccc
Q 013317 178 IGASTFKEAMKMG-VEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEF 256 (445)
Q Consensus 178 ~~~~~~~ea~~~~-~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G~~~~i~l~vD~~a~~~ 256 (445)
.+.++++.+.. .+||+++ |+|+|. .+.+.+.+.++.+|++ +| +++.|++|+
T Consensus 143 --~~~~~~~~~~~~~~Gf~~~----KiKvg~------------~~~~~d~~~v~~~re~---~g--~~~~l~~Da----- 194 (368)
T TIGR02534 143 --DRDIAEAEERIEEKRHRSF----KLKIGA------------RDPADDVAHVVAIAKA---LG--DRASVRVDV----- 194 (368)
T ss_pred --HHHHHHHHHHHHhcCcceE----EEEeCC------------CCcHHHHHHHHHHHHh---cC--CCcEEEEEC-----
Confidence 11123333333 2466655 345542 1122234445444444 45 579999999
Q ss_pred ccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHH
Q 013317 257 YDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPK 336 (445)
Q Consensus 257 ~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~ 336 (445)
|+.||.++++++. +.++++++.|||||++++|++++++|+++++ +||++||+ +.+++
T Consensus 195 -------------------N~~~~~~~A~~~~-~~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~--~pia~dE~-~~~~~ 251 (368)
T TIGR02534 195 -------------------NAAWDERTALHYL-PQLADAGVELIEQPTPAENREALARLTRRFN--VPIMADES-VTGPA 251 (368)
T ss_pred -------------------CCCCCHHHHHHHH-HHHHhcChhheECCCCcccHHHHHHHHHhCC--CCEEeCcc-cCCHH
Confidence 4678999999985 4578999999999999999999999999988 99999998 57799
Q ss_pred HHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhcCCc
Q 013317 337 RVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLATGQ 402 (445)
Q Consensus 337 ~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~ 402 (445)
+++++++.+++|++|+|++++||||++++++++|+++|+++++++ +.|+.++.++.++++...+.
T Consensus 252 ~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~-~~~s~i~~aa~~h~~a~~~~ 316 (368)
T TIGR02534 252 DALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGT-MLEGPIGTIASAHFFATFPA 316 (368)
T ss_pred HHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeec-chhhHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999998765 45887765554444433333
No 21
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=2.3e-43 Score=354.84 Aligned_cols=297 Identities=16% Similarity=0.185 Sum_probs=217.4
Q ss_pred ceeEEEEEEEecCCCCCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHHHHhHhhhccCCC
Q 013317 3 TINAVKARQIFDSRGNPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNVNSIIGPALVGKD 82 (445)
Q Consensus 3 ~I~~v~~~~i~~~~g~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i~~~l~p~LiG~d 82 (445)
||++|+.+.+ ..+.++|+|+|++|++|||++..... ..+....+++ ++|.|+|+|
T Consensus 1 ~I~~i~~~~~----~~~~~~V~i~~~~G~~G~GE~~~~~~--------------------~~~~~~~~~~-l~p~l~G~d 55 (352)
T cd03325 1 KITKIETFVV----PPRWLFVKIETDEGVVGWGEPTVEGK--------------------ARTVEAAVQE-LEDYLIGKD 55 (352)
T ss_pred CeEEEEEEEE----CCCEEEEEEEECCCCEEEeccccCCc--------------------chHHHHHHHH-HHHHhCCCC
Confidence 6899988776 13579999999999999986532100 1222334555 999999999
Q ss_pred CCCHHHHHHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeecCCc
Q 013317 83 PTEQTQIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVINGGS 162 (445)
Q Consensus 83 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~gg~ 162 (445)
|.+++++++.|. ... . ++.+....+|++||||||||+.||.+|+|||+||| |+.++++|+ |.++.++
T Consensus 56 ~~~~~~~~~~~~-~~~-~-----~~~~~~~~~a~aaid~Al~Dl~gk~~g~pv~~LLG---g~~~~~i~~--~~~~~~~- 122 (352)
T cd03325 56 PMNIEHHWQVMY-RGG-F-----YRGGPVLMSAISGIDQALWDIKGKVLGVPVHQLLG---GQVRDRVRV--YSWIGGD- 122 (352)
T ss_pred HHHHHHHHHHHH-Hhc-C-----cCCcchhhhHHHHHHHHHHHHhhhhcCCcHHHHcC---CCccceeEE--EEeCCCC-
Confidence 999999999986 311 0 01122234699999999999999999999999999 976677776 4332111
Q ss_pred cCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCC---CccCchHHHHHHHHHHHhc
Q 013317 163 HADNKLAMQEFMILPIGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAP---NIQESYEGFELLKTAIAKG 239 (445)
Q Consensus 163 ~~~~~~~~~e~~~~p~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~---~~~~~~~~l~~v~~ai~~~ 239 (445)
+. +...+++.+...+||+.+| .|+|.. .++.+ +.+.+.+.++++|++ .
T Consensus 123 ------~~---------~~~~~~~~~~~~~Gf~~~K----iKvg~~-------~~~~~~~~~~~~D~~~i~avr~~---~ 173 (352)
T cd03325 123 ------RP---------SDVAEAARARREAGFTAVK----MNATEE-------LQWIDTSKKVDAAVERVAALREA---V 173 (352)
T ss_pred ------CH---------HHHHHHHHHHHHcCCCEEE----ecCCCC-------cccCCCHHHHHHHHHHHHHHHHh---h
Confidence 11 1223455555556676653 455421 01111 112234444444443 4
Q ss_pred CCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHh
Q 013317 240 GYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKI 319 (445)
Q Consensus 240 G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~ 319 (445)
| +++.|++|+ |+.||.++++++.. .++++++.|||||++++|++++++|++++
T Consensus 174 g--~~~~l~vDa------------------------N~~~~~~~A~~~~~-~l~~~~i~~iEeP~~~~d~~~~~~L~~~~ 226 (352)
T cd03325 174 G--PDIDIGVDF------------------------HGRVSKPMAKDLAK-ELEPYRLLFIEEPVLPENVEALAEIAART 226 (352)
T ss_pred C--CCCEEEEEC------------------------CCCCCHHHHHHHHH-hccccCCcEEECCCCccCHHHHHHHHHhC
Confidence 5 589999999 46789999999854 57899999999999999999999999999
Q ss_pred CCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhH--HHHHHHhh
Q 013317 320 GRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDT--FIADLSVG 397 (445)
Q Consensus 320 ~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~--~~~~la~a 397 (445)
+ +||++||+. .+++++.++++.+++|++|+|++++||+|++++++++|+++|++++ +|.+ ++.++ +.+||+.+
T Consensus 227 ~--~pia~dEs~-~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~-~h~~-~s~i~~~a~~hlaa~ 301 (352)
T cd03325 227 T--IPIATGERL-FSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALA-PHCP-LGPIALAASLHVDAS 301 (352)
T ss_pred C--CCEEecccc-cCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEe-ccCC-CChHHHHHHHHHHHh
Confidence 8 999999984 6799999999999999999999999999999999999999999987 5533 66665 44555544
Q ss_pred h
Q 013317 398 L 398 (445)
Q Consensus 398 ~ 398 (445)
+
T Consensus 302 ~ 302 (352)
T cd03325 302 T 302 (352)
T ss_pred c
Confidence 3
No 22
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=2.1e-43 Score=357.44 Aligned_cols=283 Identities=17% Similarity=0.150 Sum_probs=208.1
Q ss_pred CCeEEEEEEeCC---C--cEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHHHHhHhhhccCCCCC--------
Q 013317 18 NPTVEVDVSLSD---G--TLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNVNSIIGPALVGKDPT-------- 84 (445)
Q Consensus 18 ~~~v~V~V~td~---G--~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~-------- 84 (445)
..+++|+|+||+ | ++|||.+..+. ... ...+++.++|.|+|+||.
T Consensus 26 ~~~~lV~v~td~~~~G~~~~G~Ge~~~~~--------------------~~~--~~~i~~~~~p~LiG~dp~~~~~~~~~ 83 (385)
T cd03326 26 LTTSLVAVVTDVVRDGRPVVGYGFDSIGR--------------------YAQ--GGLLRERFIPRLLAAAPDSLLDDAGG 83 (385)
T ss_pred cEEEEEEEEeccccCCCceeEEEeccCCc--------------------hhH--HHHHHHHHHHHhcCCChHHhhhcccc
Confidence 356999999999 9 99998653210 011 134778899999999999
Q ss_pred --CHHHHHHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCC-----cceeeeeeEEe
Q 013317 85 --EQTQIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNK-----TLVLPVPAFNV 157 (445)
Q Consensus 85 --~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~-----~~~ip~p~~~~ 157 (445)
+++++|+.|+ .-. . +++......|+|||||||||+.||.+|+|||+||| |+. ++++|+ |.+
T Consensus 84 ~~~~~~l~~~~~-~~~-~-----~~~~~~~~~A~saID~ALwDl~gK~~g~Pv~~LLG---G~~~~~~~~~~v~~--y~~ 151 (385)
T cd03326 84 NLDPARAWAAMM-RNE-K-----PGGHGERAVAVGALDMAVWDAVAKIAGLPLYRLLA---RRYGRGQADPRVPV--YAA 151 (385)
T ss_pred cCCHHHHHHHHH-hcC-c-----cCCCCHHHHHHHHHHHHHHHHhHHHcCCcHHHHcC---CcccCCCCCCeEEE--EEe
Confidence 4499999997 311 0 11222334799999999999999999999999999 853 356665 443
Q ss_pred ecCCccCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHH
Q 013317 158 INGGSHADNKLAMQEFMILPIGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIA 237 (445)
Q Consensus 158 ~~gg~~~~~~~~~~e~~~~p~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~ 237 (445)
++...+ . ...++..+++.+...+||+++| .|+|. .+.+.+.+.++.+|++
T Consensus 152 --~~~~~~----~------~~~~~~~~~a~~~~~~Gf~~~K----ikvg~------------~~~~~di~~v~avRe~-- 201 (385)
T cd03326 152 --GGYYYP----G------DDLGRLRDEMRRYLDRGYTVVK----IKIGG------------APLDEDLRRIEAALDV-- 201 (385)
T ss_pred --cCCCCC----C------CCHHHHHHHHHHHHHCCCCEEE----EeCCC------------CCHHHHHHHHHHHHHh--
Confidence 221100 0 0012234566565566776653 34441 1122234445544444
Q ss_pred hcCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHH
Q 013317 238 KGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTG 317 (445)
Q Consensus 238 ~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~ 317 (445)
+| +++.|++|+ |+.||.++++++. +.+++|++.|||||++++|++++++|++
T Consensus 202 -~G--~~~~l~vDa------------------------N~~w~~~~A~~~~-~~l~~~~~~~iEeP~~~~d~~~~~~L~~ 253 (385)
T cd03326 202 -LG--DGARLAVDA------------------------NGRFDLETAIAYA-KALAPYGLRWYEEPGDPLDYALQAELAD 253 (385)
T ss_pred -cC--CCCeEEEEC------------------------CCCCCHHHHHHHH-HHhhCcCCCEEECCCCccCHHHHHHHHh
Confidence 46 689999999 4678999999985 4579999999999999999999999999
Q ss_pred HhCCceEEEeccccccCHHHHHHHHhcCCC----CEEEeccCccccHHHHHHHHHHHHHcCCc--EEecCCCCCChhHHH
Q 013317 318 KIGRHVQIVGDDLLVTNPKRVEKAIKEKTC----NALLLKVNQIGSVTESIEAVKMAKRAGWG--VMASHRSGETEDTFI 391 (445)
Q Consensus 318 ~~~~~~pI~gde~~~~~~~~~~~~i~~~a~----d~v~ik~~k~GGit~a~~i~~~A~~~g~~--~~~~~~~~et~~~~~ 391 (445)
+++ +||++||+. .++++++++++.+++ |++|+|++++||||++++++++|+++|++ ++.+|. ...+.
T Consensus 254 ~~~--iPIa~gEs~-~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~~~kia~lA~a~gi~~~~~~pH~----~~~a~ 326 (385)
T cd03326 254 HYD--GPIATGENL-FSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDVLEAHGWSRRRFFPHG----GHLMS 326 (385)
T ss_pred hCC--CCEEcCCCc-CCHHHHHHHHHhCCccccCCEEEeCchhhCCHHHHHHHHHHHHHcCCCCceeecch----HHHHH
Confidence 998 999999985 669999999999988 99999999999999999999999999998 356774 23456
Q ss_pred HHHHhhhc
Q 013317 392 ADLSVGLA 399 (445)
Q Consensus 392 ~~la~a~~ 399 (445)
+|++.+..
T Consensus 327 lhl~aa~~ 334 (385)
T cd03326 327 LHIAAGLG 334 (385)
T ss_pred HHHHhcCC
Confidence 77776644
No 23
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=8.7e-43 Score=351.42 Aligned_cols=289 Identities=17% Similarity=0.190 Sum_probs=220.8
Q ss_pred CCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHHHHhHhhhccCCCCCCHHHHHHHHHHhh
Q 013317 18 NPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNVNSIIGPALVGKDPTEQTQIDNFMVQQL 97 (445)
Q Consensus 18 ~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~~~i~~~l~~~l 97 (445)
+..++|||+|++|++|||.+...+. +.|.+++...+...+++.+.|.|+|+|+.+++++|+.|. .+
T Consensus 24 ~~~~~Vrv~t~~G~~G~GE~~~~~~-------------~~~~~~~~~~~~~~i~~~~~p~l~g~~~~~~~~~~~~~~-~~ 89 (354)
T cd03317 24 REFLIVELTDEEGITGYGEVVAFEG-------------PFYTEETNATAWHILKDYLLPLLLGREFSHPEEVSERLA-PI 89 (354)
T ss_pred eeEEEEEEEECCCCeEEEecCCCCC-------------CcccCCCHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH-Hh
Confidence 3568999999999999996532110 125566677777778888999999999999999999988 43
Q ss_pred ccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeecCCccCCCcccccceeecc
Q 013317 98 DGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVINGGSHADNKLAMQEFMILP 177 (445)
Q Consensus 98 ~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~gg~~~~~~~~~~e~~~~p 177 (445)
.+ ...|++||||||||+.||.+|+|+|+||| | .++++|+ |.++..+ +.
T Consensus 90 ~~------------~~~a~aaid~AlwDl~gk~~g~Pv~~LLG---g-~~~~v~~--~~s~~~~-------~~------- 137 (354)
T cd03317 90 KG------------NNMAKAGLEMAVWDLYAKAQGQSLAQYLG---G-TRDSIPV--GVSIGIQ-------DD------- 137 (354)
T ss_pred cC------------ChHHHHHHHHHHHHHHHHHcCCCHHHHhC---C-CCCeEEe--eEEEeCC-------Cc-------
Confidence 22 13599999999999999999999999999 8 4566666 4432111 00
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcCCCcceEEEEeccccccc
Q 013317 178 IGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFY 257 (445)
Q Consensus 178 ~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G~~~~i~l~vD~~a~~~~ 257 (445)
.++..+++.+...+||+++| +|+| + +.+.+.++.+|+++ +++.|++|+
T Consensus 138 -~~~~~~~~~~~~~~Gf~~~K----iKv~-------------~--~~d~~~l~~vr~~~------g~~~l~lDa------ 185 (354)
T cd03317 138 -VEQLLKQIERYLEEGYKRIK----LKIK-------------P--GWDVEPLKAVRERF------PDIPLMADA------ 185 (354)
T ss_pred -HHHHHHHHHHHHHcCCcEEE----EecC-------------h--HHHHHHHHHHHHHC------CCCeEEEEC------
Confidence 02234556555556776553 3432 1 12355565555543 368999999
Q ss_pred cccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHH
Q 013317 258 DRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKR 337 (445)
Q Consensus 258 ~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~ 337 (445)
|+.||.+++. ++ +.+++|++.|||||++++|++++++|+++++ +||++||+ +.++++
T Consensus 186 ------------------N~~~~~~~a~-~~-~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~--~pia~dEs-~~~~~~ 242 (354)
T cd03317 186 ------------------NSAYTLADIP-LL-KRLDEYGLLMIEQPLAADDLIDHAELQKLLK--TPICLDES-IQSAED 242 (354)
T ss_pred ------------------CCCCCHHHHH-HH-HHhhcCCccEEECCCChhHHHHHHHHHhhcC--CCEEeCCc-cCCHHH
Confidence 4668888874 54 5589999999999999999999999999998 99999998 477999
Q ss_pred HHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhcCCccccCCC
Q 013317 338 VEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAP 408 (445)
Q Consensus 338 ~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~ 408 (445)
++++++.+++|++|+|++++||||++++++++|+++|+++++|++ .|+.++.+++++++..+....++.+
T Consensus 243 ~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~-~es~l~~~a~~hla~~~~~~~~~~~ 312 (354)
T cd03317 243 ARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGM-LESGIGRAHNVALASLPNFTYPGDI 312 (354)
T ss_pred HHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEecCc-ccchHHHHHHHHHHhCCCCCCcccc
Confidence 999999999999999999999999999999999999999988874 6998887776666544333333443
No 24
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=100.00 E-value=1.1e-42 Score=345.93 Aligned_cols=287 Identities=15% Similarity=0.138 Sum_probs=218.4
Q ss_pred CCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHHHHhHhhhccCCCCCCHHHHHHHHHHhh
Q 013317 18 NPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNVNSIIGPALVGKDPTEQTQIDNFMVQQL 97 (445)
Q Consensus 18 ~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~~~i~~~l~~~l 97 (445)
+..++|+|+|++|++|||.+...+. +.|.+++...+...+.+.++|.|+| ++.+++++++.|. ..
T Consensus 21 ~~~~lV~v~~~~G~~G~GE~~~~~~-------------~~~~~~~~~~~~~~i~~~~~~~l~g-~~~~~~~~~~~~~-~~ 85 (324)
T TIGR01928 21 RDCLIIELIDDKGNAGFGEVVAFQT-------------PWYTHETIATVKHIIEDFFEPNINK-EFEHPSEALELVR-SL 85 (324)
T ss_pred CcEEEEEEEECCCCeEEEeccccCC-------------CCcCcccHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHH-Hc
Confidence 4679999999999999996532110 1144555666666777788999999 9999999999886 33
Q ss_pred ccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeecCCccCCCcccccceeecc
Q 013317 98 DGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVINGGSHADNKLAMQEFMILP 177 (445)
Q Consensus 98 ~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~gg~~~~~~~~~~e~~~~p 177 (445)
.+ ...|++||||||||+.||.+|+|||+||| | .++++|+ |.++ |..
T Consensus 86 ~~------------~~~a~said~AlwDl~gk~~g~Pl~~llG---g-~~~~i~~--y~~~--~~~-------------- 131 (324)
T TIGR01928 86 KG------------TPMAKAGLEMALWDMYHKLPSFSLAYGQG---K-LRDKAPA--GAVS--GLA-------------- 131 (324)
T ss_pred cC------------CcHHHHHHHHHHHHHHHhhhCCcHHHHhC---C-CCCeEEE--eEEc--CCC--------------
Confidence 21 13599999999999999999999999999 8 4566665 4432 210
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcCCCcceEEEEeccccccc
Q 013317 178 IGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFY 257 (445)
Q Consensus 178 ~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G~~~~i~l~vD~~a~~~~ 257 (445)
.+++..+++.+...+||+.+| .|+| + +.+.+.++.+|+++ +++.|++|+
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~K----iKv~-------------~--~~d~~~v~~vr~~~------~~~~l~vDa------ 180 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIK----LKIT-------------P--QIMHQLVKLRRLRF------PQIPLVIDA------ 180 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEE----EEeC-------------C--chhHHHHHHHHHhC------CCCcEEEEC------
Confidence 112345566666666776653 3432 1 12345555555543 578999999
Q ss_pred cccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHH
Q 013317 258 DRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKR 337 (445)
Q Consensus 258 ~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~ 337 (445)
|+.||.+++ .+ .+.+++|++.|||||++++|++++++|+++++ +||++||+ +.++++
T Consensus 181 ------------------N~~~~~~~a-~~-~~~l~~~~~~~iEeP~~~~~~~~~~~l~~~~~--~pia~dEs-~~~~~~ 237 (324)
T TIGR01928 181 ------------------NESYDLQDF-PR-LKELDRYQLLYIEEPFKIDDLSMLDELAKGTI--TPICLDES-ITSLDD 237 (324)
T ss_pred ------------------CCCCCHHHH-HH-HHHHhhCCCcEEECCCChhHHHHHHHHHhhcC--CCEeeCCC-cCCHHH
Confidence 466788775 45 45688999999999999999999999999998 99999998 577999
Q ss_pred HHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhcCCccccCCC
Q 013317 338 VEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAP 408 (445)
Q Consensus 338 ~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~ 408 (445)
++++++.+++|++|+|++++||||++++++++|+++|++++++|+ .|++++.++.++++....+..+|..
T Consensus 238 ~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~-~es~i~~aa~~hla~~~~~~~~~~~ 307 (324)
T TIGR01928 238 ARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGM-LETGISRAFNVALASLGGNDYPGDV 307 (324)
T ss_pred HHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcce-EcccHHHHHHHHHHhCCCCCCCCCC
Confidence 999999999999999999999999999999999999999988874 5887765555555544555555544
No 25
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=100.00 E-value=5e-43 Score=355.17 Aligned_cols=276 Identities=17% Similarity=0.189 Sum_probs=206.6
Q ss_pred CeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHHHHhHhhhccCCCCCCHHHHHHHHHHhhc
Q 013317 19 PTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNVNSIIGPALVGKDPTEQTQIDNFMVQQLD 98 (445)
Q Consensus 19 ~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~~~i~~~l~~~l~ 98 (445)
.+++|||+||+|++|+|.+..+ ......+++.|+|.|+|+||.+++.+|+.|+ ...
T Consensus 57 ~~vlVrI~td~G~~G~Ge~~~~-----------------------~~~~~~v~~~l~p~LiG~dp~~~e~l~~~m~-~~~ 112 (394)
T PRK15440 57 GTLVVEVEAENGQVGFAVSTAG-----------------------EMGAFIVEKHLNRFIEGKCVSDIELIWDQML-NAT 112 (394)
T ss_pred ceEEEEEEECCCCEEEEeCCCc-----------------------HHHHHHHHHHHHHHcCCCChhhHHHHHHHHH-hhc
Confidence 5689999999999999863211 1123457788999999999999999999997 321
Q ss_pred cCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeecCCccCCCcccccceeeccC
Q 013317 99 GTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVINGGSHADNKLAMQEFMILPI 178 (445)
Q Consensus 99 ~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~gg~~~~~~~~~~e~~~~p~ 178 (445)
. .++++++..+|++||||||||+.||.+|+|||+||| |..++++|+ |++ ++. |
T Consensus 113 ~-----~~g~~g~~~~A~saIDiALwDl~gK~~g~Pv~~LLG---G~~r~~v~~--y~~--~~~--------------~- 165 (394)
T PRK15440 113 L-----YYGRKGLVMNTISCVDLALWDLLGKVRGLPVYKLLG---GAVRDELQF--YAT--GAR--------------P- 165 (394)
T ss_pred c-----ccCCccHhhhHHHHHHHHHHHHhhhHcCCcHHHHcC---CCCCCeeEE--Eec--CCC--------------h-
Confidence 1 122344545799999999999999999999999999 987777776 432 210 0
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcCCCcceEEEEecccccccc
Q 013317 179 GASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYD 258 (445)
Q Consensus 179 ~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G~~~~i~l~vD~~a~~~~~ 258 (445)
+.+. .+||+++| +|+|.. . .+|. .+.+.+.+.++.+|+++ | +++.|++|+
T Consensus 166 -----~~a~---~~Gf~~~K----ik~~~g-~---~~g~--~~~~~di~~v~avReav---G--~d~~l~vDa------- 215 (394)
T PRK15440 166 -----DLAK---EMGFIGGK----MPLHHG-P---ADGD--AGLRKNAAMVADMREKV---G--DDFWLMLDC------- 215 (394)
T ss_pred -----HHHH---hCCCCEEE----EcCCcC-c---ccch--HHHHHHHHHHHHHHHhh---C--CCCeEEEEC-------
Confidence 1111 24676653 344210 0 0110 11223345555555444 6 689999999
Q ss_pred ccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHH
Q 013317 259 RKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRV 338 (445)
Q Consensus 259 ~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~ 338 (445)
|+.||.++++++. +.+++|++.|||||++++|+++|++|+++++.++||++||+. .+++++
T Consensus 216 -----------------N~~~~~~~Ai~~~-~~le~~~l~wiEEPl~~~d~~~~~~L~~~~~~~i~ia~gE~~-~~~~~~ 276 (394)
T PRK15440 216 -----------------WMSLDVNYATKLA-HACAPYGLKWIEECLPPDDYWGYRELKRNAPAGMMVTSGEHE-ATLQGF 276 (394)
T ss_pred -----------------CCCCCHHHHHHHH-HHhhhcCCcceeCCCCcccHHHHHHHHHhCCCCCceecCCCc-cCHHHH
Confidence 4678999999985 557999999999999999999999999997655788889985 569999
Q ss_pred HHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhc
Q 013317 339 EKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLA 399 (445)
Q Consensus 339 ~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~ 399 (445)
+++++.+++|++|+|+++|||||+++|++++|+++|+++ .+|.+ ....+|++.+..
T Consensus 277 ~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~-~pH~~----~~~~~hl~aa~~ 332 (394)
T PRK15440 277 RTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLV-VPHGS----SVYSHHFVITRT 332 (394)
T ss_pred HHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCee-cccCH----HHHHHHHHhhCc
Confidence 999999999999999999999999999999999999996 56742 245567776654
No 26
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=8.3e-43 Score=355.78 Aligned_cols=290 Identities=16% Similarity=0.165 Sum_probs=208.2
Q ss_pred ceeEEEEEEEec-------C---CC----CCeEEEEEEeCC-CcEEEEeccCCCccccccceeeccCCcccCCccHHHHH
Q 013317 3 TINAVKARQIFD-------S---RG----NPTVEVDVSLSD-GTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAV 67 (445)
Q Consensus 3 ~I~~v~~~~i~~-------~---~g----~~~v~V~V~td~-G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~ 67 (445)
||++|+++.+.- . .. ...++|+|+||+ |++|||.+... +++.....
T Consensus 2 kI~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~V~i~td~~G~~G~Ge~~~~-------------------~~~~~~~~ 62 (415)
T cd03324 2 KITALEVRDVRFPTSLELDGSDAMNPDPDYSAAYVVLRTDAAGLKGHGLTFTI-------------------GRGNEIVC 62 (415)
T ss_pred eEEEEEEEEEEeecCccCCCcccccCCCCceEEEEEEEecCCCCEEEEEeccC-------------------CCchHHHH
Confidence 799999987731 1 11 136899999999 99999865321 11122233
Q ss_pred HHHHHhHhhhccCCCCCCHHHHHHHHHHhhccCC-Cccccc-cccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCC
Q 013317 68 QNVNSIIGPALVGKDPTEQTQIDNFMVQQLDGTV-NEWGWC-KQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGN 145 (445)
Q Consensus 68 ~~i~~~l~p~LiG~d~~~~~~i~~~l~~~l~~~~-~~~~~~-~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~ 145 (445)
. +.+.++|.|+|+||.+++.+++.+++.+.... ..| .+ ++++...|+|||||||||+.||.+|+|||+||| |.
T Consensus 63 ~-~~~~lap~liG~d~~~i~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~~LLG---g~ 137 (415)
T cd03324 63 A-AIEALAHLVVGRDLESIVADMGKFWRRLTSDSQLRW-IGPEKGVIHLATAAVVNAVWDLWAKAEGKPLWKLLV---DM 137 (415)
T ss_pred H-HHHHHHHHhCCCCHHHHHHHHHHHHHHhhcccccee-cCCcccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhc---CC
Confidence 3 34679999999999999766666653332110 001 01 123334699999999999999999999999999 84
Q ss_pred Cc-----------------------------------------ceeeeeeEEeecCCccCCCcccccceeeccCCcccHH
Q 013317 146 KT-----------------------------------------LVLPVPAFNVINGGSHADNKLAMQEFMILPIGASTFK 184 (445)
Q Consensus 146 ~~-----------------------------------------~~ip~p~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~ 184 (445)
.+ +++|+ |++ +++... . ..++..+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--y~~-~~~~~~---~---------~~~~~~~ 202 (415)
T cd03324 138 TPEELVSCIDFRYITDALTPEEALEILRRGQPGKAAREADLLAEGYPA--YTT-SAGWLG---Y---------SDEKLRR 202 (415)
T ss_pred CHHHhhhcccceeeccccCHHHHHHHhhhcccchhhhhhhhhccCCce--eec-CCcccC---C---------CHHHHHH
Confidence 33 23333 432 111100 0 1122345
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcCCCcceEEEEeccccccccccCcce
Q 013317 185 EAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDRKDKTY 264 (445)
Q Consensus 185 ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G~~~~i~l~vD~~a~~~~~~~~~~y 264 (445)
++.+...+||+++| .|+|. +.+.+.+.++++|++ +| +++.|++|+
T Consensus 203 ~a~~~~~~Gf~~~K----iKvg~-------------~~~~d~~~v~avRe~---vG--~~~~L~vDa------------- 247 (415)
T cd03324 203 LCKEALAQGFTHFK----LKVGA-------------DLEDDIRRCRLAREV---IG--PDNKLMIDA------------- 247 (415)
T ss_pred HHHHHHHcCCCEEE----EeCCC-------------CHHHHHHHHHHHHHh---cC--CCCeEEEEC-------------
Confidence 66666666776654 34431 112234455555444 46 689999999
Q ss_pred eecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHh---CCceEEEeccccccCHHHHHHH
Q 013317 265 DLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKI---GRHVQIVGDDLLVTNPKRVEKA 341 (445)
Q Consensus 265 ~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~---~~~~pI~gde~~~~~~~~~~~~ 341 (445)
|+.||.++++++. +.+++|++.||||||+++|+++|++|++++ + +||++||+. .++++++++
T Consensus 248 -----------N~~w~~~~A~~~~-~~L~~~~l~~iEEP~~~~d~~~~~~L~~~~~~~~--iPIa~gEs~-~~~~~~~~l 312 (415)
T cd03324 248 -----------NQRWDVPEAIEWV-KQLAEFKPWWIEEPTSPDDILGHAAIRKALAPLP--IGVATGEHC-QNRVVFKQL 312 (415)
T ss_pred -----------CCCCCHHHHHHHH-HHhhccCCCEEECCCCCCcHHHHHHHHHhcccCC--CceecCCcc-CCHHHHHHH
Confidence 4678999999985 457999999999999999999999999998 5 999999985 569999999
Q ss_pred HhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCC
Q 013317 342 IKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHR 382 (445)
Q Consensus 342 i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~ 382 (445)
++.+++|++|+|++++||||++++++++|+++|++++ +|.
T Consensus 313 l~~~a~dil~~d~~~~GGit~~~kia~lA~a~gi~~~-pH~ 352 (415)
T cd03324 313 LQAGAIDVVQIDSCRLGGVNENLAVLLMAAKFGVPVC-PHA 352 (415)
T ss_pred HHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEE-EcC
Confidence 9999999999999999999999999999999999974 663
No 27
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=1.3e-42 Score=351.62 Aligned_cols=295 Identities=15% Similarity=0.185 Sum_probs=216.8
Q ss_pred ceeEEEEEEEe--------c----CCC----CCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHH
Q 013317 3 TINAVKARQIF--------D----SRG----NPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKA 66 (445)
Q Consensus 3 ~I~~v~~~~i~--------~----~~g----~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a 66 (445)
||++|+++.+. + +.+ ...++|||+|++|++|||+.... . .+
T Consensus 1 ~I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~Vri~td~G~~G~G~~~~~----------------------~-~~ 57 (368)
T cd03329 1 KITDVEVTVFEYPTQPVSFDGGHHHPGPAGTRKLALLTIETDEGAKGHAFGGRP----------------------V-TD 57 (368)
T ss_pred CeEEEEEEEEEeecCcccccccccCCCCCccceEEEEEEEECCCCeEEEecCCc----------------------h-hH
Confidence 68888888763 1 122 35799999999999999853210 1 12
Q ss_pred HHHHHHhHhhhccCCCCCCHHHHHHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCC
Q 013317 67 VQNVNSIIGPALVGKDPTEQTQIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNK 146 (445)
Q Consensus 67 ~~~i~~~l~p~LiG~d~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~ 146 (445)
...+.+.|+|.|+|+||.+++++|+.|.+.+.+ ....|++||||||||+.||.+|+|||+||| | .
T Consensus 58 ~~~~~~~l~p~liG~d~~~~~~~~~~~~~~~~~-----------~~~~A~said~AlwDl~gk~~g~Pl~~LLG---g-~ 122 (368)
T cd03329 58 PALVDRFLKKVLIGQDPLDRERLWQDLWRLQRG-----------LTDRGLGLVDIALWDLAGKYLGLPVHRLLG---G-Y 122 (368)
T ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHhcC-----------cchhHHHHHHHHHHHHhhhhcCCcHHHHhh---c-c
Confidence 345677899999999999999999999832221 223699999999999999999999999999 8 4
Q ss_pred cceeeeeeEEeecCCccCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCch
Q 013317 147 TLVLPVPAFNVINGGSHADNKLAMQEFMILPIGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESY 226 (445)
Q Consensus 147 ~~~ip~p~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~ 226 (445)
++++|+ |.++..+... ... . ..++..+++.+...+||+.+| .|.|. ....+.+.
T Consensus 123 ~~~v~~--y~s~~~~~~~-~~~--~------~~~~~~~~a~~~~~~Gf~~~K----ik~~~-----------~~~~~~di 176 (368)
T cd03329 123 REKIPA--YASTMVGDDL-EGL--E------SPEAYADFAEECKALGYRAIK----LHPWG-----------PGVVRRDL 176 (368)
T ss_pred ccceeE--EEecCCCccc-ccC--C------CHHHHHHHHHHHHHcCCCEEE----EecCC-----------chhHHHHH
Confidence 567766 4432212100 000 0 011233444444445666553 23220 01123345
Q ss_pred HHHHHHHHHHHhcCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCc
Q 013317 227 EGFELLKTAIAKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQ 306 (445)
Q Consensus 227 ~~l~~v~~ai~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~ 306 (445)
+.++.+|+++ | +++.|++|+ |++||.++++++. +.++++++.|||||+++
T Consensus 177 ~~i~~vR~~~---G--~~~~l~vDa------------------------n~~~~~~~A~~~~-~~l~~~~l~~iEeP~~~ 226 (368)
T cd03329 177 KACLAVREAV---G--PDMRLMHDG------------------------AHWYSRADALRLG-RALEELGFFWYEDPLRE 226 (368)
T ss_pred HHHHHHHHHh---C--CCCeEEEEC------------------------CCCcCHHHHHHHH-HHhhhcCCCeEeCCCCc
Confidence 5555555544 5 579999999 4678899999875 45789999999999999
Q ss_pred cCHHHHHHHHHHhCCceEEEeccccccC-HHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCC
Q 013317 307 DDWEHYAELTGKIGRHVQIVGDDLLVTN-PKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGE 385 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~~pI~gde~~~~~-~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~e 385 (445)
+|++++++|+++++ +||++||+. .+ +++++++++.+++|++|+|++++||||++++++++|+++|+++++ |.+
T Consensus 227 ~d~~~~~~l~~~~~--ipIa~~E~~-~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~-h~~-- 300 (368)
T cd03329 227 ASISSYRWLAEKLD--IPILGTEHS-RGALESRADWVLAGATDFLRADVNLVGGITGAMKTAHLAEAFGLDVEL-HGN-- 300 (368)
T ss_pred hhHHHHHHHHhcCC--CCEEccCcc-cCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEE-ECh--
Confidence 99999999999998 999999985 56 999999999999999999999999999999999999999999864 532
Q ss_pred ChhHHHHHHHhhhc
Q 013317 386 TEDTFIADLSVGLA 399 (445)
Q Consensus 386 t~~~~~~~la~a~~ 399 (445)
.++.+|++.+++
T Consensus 301 --~~a~~hlaaa~~ 312 (368)
T cd03329 301 --GAANLHVIAAIR 312 (368)
T ss_pred --HHHHHHHHhcCC
Confidence 456678877754
No 28
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=100.00 E-value=3.3e-42 Score=347.76 Aligned_cols=306 Identities=17% Similarity=0.226 Sum_probs=222.3
Q ss_pred ceeEEEEEEEecC--------CCCCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHHHHhH
Q 013317 3 TINAVKARQIFDS--------RGNPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNVNSII 74 (445)
Q Consensus 3 ~I~~v~~~~i~~~--------~g~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i~~~l 74 (445)
||++|+++.+... ..+..++|+|+|++|++|||++.... . .......|++.+
T Consensus 1 kI~~i~~~~~~~p~~~~~~~~~~~~~~~V~v~~~~G~~G~GE~~~~~------------------~--~~~~~~~l~~~~ 60 (357)
T cd03316 1 KITDVETFVLRVPLPEPGGAVTWRNLVLVRVTTDDGITGWGEAYPGG------------------R--PSAVAAAIEDLL 60 (357)
T ss_pred CeeEEEEEEEecCCcccccccccceEEEEEEEeCCCCEEEEeccCCC------------------C--chHHHHHHHHHH
Confidence 6889988877421 13467999999999999999654321 0 123345577779
Q ss_pred hhhccCCCCCCHHHHHHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeee
Q 013317 75 GPALVGKDPTEQTQIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPA 154 (445)
Q Consensus 75 ~p~LiG~d~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~ 154 (445)
+|.|+|+++.+++++|+.|.+...+ .++++....|++|||+||||+.||.+|+|||+||| |..+.++|+
T Consensus 61 ~p~l~G~~~~~~~~~~~~l~~~~~~------~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~~llG---g~~~~~v~~-- 129 (357)
T cd03316 61 APLLIGRDPLDIERLWEKLYRRLFW------RGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLG---GKVRDRVRV-- 129 (357)
T ss_pred HHHccCCChHHHHHHHHHHHHhccc------CCCcHHHHHHHHHHHHHHHHhcccccCCcHhhccC---CccCCceee--
Confidence 9999999999999999999832211 11122335799999999999999999999999999 875666766
Q ss_pred EEeecCCccCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHH
Q 013317 155 FNVINGGSHADNKLAMQEFMILPIGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKT 234 (445)
Q Consensus 155 ~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ 234 (445)
|.++.++. .+. +...+++.+...+||+.+| .|+|..... ....+.+.+.++.+|+
T Consensus 130 ~~~~~~~~-----~~~---------~~~~~~a~~~~~~Gf~~~K----ik~g~~~~~-------~~~~~~d~~~v~~ir~ 184 (357)
T cd03316 130 YASGGGYD-----DSP---------EELAEEAKRAVAEGFTAVK----LKVGGPDSG-------GEDLREDLARVRAVRE 184 (357)
T ss_pred EEecCCCC-----CCH---------HHHHHHHHHHHHcCCCEEE----EcCCCCCcc-------hHHHHHHHHHHHHHHH
Confidence 44322110 001 1223445444455665543 344421000 0001223445555544
Q ss_pred HHHhcCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHH
Q 013317 235 AIAKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAE 314 (445)
Q Consensus 235 ai~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~ 314 (445)
++ | +++.|++|+ |++||.+++++++ +.++++++.|||||++++|++++++
T Consensus 185 ~~---g--~~~~l~vDa------------------------N~~~~~~~a~~~~-~~l~~~~i~~iEqP~~~~~~~~~~~ 234 (357)
T cd03316 185 AV---G--PDVDLMVDA------------------------NGRWDLAEAIRLA-RALEEYDLFWFEEPVPPDDLEGLAR 234 (357)
T ss_pred hh---C--CCCEEEEEC------------------------CCCCCHHHHHHHH-HHhCccCCCeEcCCCCccCHHHHHH
Confidence 44 5 579999999 4678999999985 4578899999999999999999999
Q ss_pred HHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChh--HHHH
Q 013317 315 LTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETED--TFIA 392 (445)
Q Consensus 315 L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~--~~~~ 392 (445)
|+++++ +||++||+ +.+++++.++++.+++|++|+|++++||++++++++++|+++|++++++++ .+ .+ ++.+
T Consensus 235 l~~~~~--ipi~~dE~-~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~-~~-~i~~aa~~ 309 (357)
T cd03316 235 LRQATS--VPIAAGEN-LYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGA-GG-PIGLAASL 309 (357)
T ss_pred HHHhCC--CCEEeccc-cccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCC-CC-HHHHHHHH
Confidence 999988 99999998 467999999999999999999999999999999999999999999887774 44 44 4556
Q ss_pred HHHhhhc
Q 013317 393 DLSVGLA 399 (445)
Q Consensus 393 ~la~a~~ 399 (445)
||+.++.
T Consensus 310 hla~a~~ 316 (357)
T cd03316 310 HLAAALP 316 (357)
T ss_pred HHHHhCc
Confidence 6666543
No 29
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1.6e-41 Score=345.35 Aligned_cols=311 Identities=14% Similarity=0.149 Sum_probs=214.0
Q ss_pred ceeEEEEEEEe--------cCCC----CCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHH
Q 013317 3 TINAVKARQIF--------DSRG----NPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNV 70 (445)
Q Consensus 3 ~I~~v~~~~i~--------~~~g----~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i 70 (445)
||++|++..+. .+.+ .+.++|||+||+|++|||.++.+ ..++..+
T Consensus 1 ~I~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~Vrv~td~G~~G~Ge~~~~-----------------------~~~~~~~ 57 (395)
T cd03323 1 KITEMRVTPVAGHDSPLLNLSGAHEPFFTRNIVELTDDNGNTGVGESPGG-----------------------AEALEAL 57 (395)
T ss_pred CeEEEEEEEEeccCCccccccccCCCcceEEEEEEEECCCCeeccccCCC-----------------------HHHHHHH
Confidence 68999987663 1222 36799999999999999864421 1112233
Q ss_pred HHhHhhhccCCCC-CCHHHHHHHHHHhhccCCCccccccc-------cccchhHHHHHHHHHHHHHHhcCCchHHHHHhh
Q 013317 71 NSIIGPALVGKDP-TEQTQIDNFMVQQLDGTVNEWGWCKQ-------KLGANAILAVSLAVCKAGAMVKKIPLYQHIANL 142 (445)
Q Consensus 71 ~~~l~p~LiG~d~-~~~~~i~~~l~~~l~~~~~~~~~~~~-------~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~ 142 (445)
..++|.|+|+++ .+.+.+|+.|.+..... + .|+. .+...|++||||||||+.||.+|+|||+|||
T Consensus 58 -~~~~~~llg~~~~~~~~~~~~~~~~~~~~~-~---~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLG-- 130 (395)
T cd03323 58 -LEAARSLVGGDVFGAYLAVLESVRVAFADR-D---AGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLLG-- 130 (395)
T ss_pred -HHHhHHHhCCCcchhhHHHHHHHHHHHhcc-c---ccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHHHHhC--
Confidence 357889999988 58888999998443211 0 1111 1335799999999999999999999999999
Q ss_pred hCCCcceeeeeeEEeecCCccCCCcc-ccc--ceeeccCCcccHHHHHHHHH-HHHHHHHHHHHhhcCCCCcccCCCCCC
Q 013317 143 AGNKTLVLPVPAFNVINGGSHADNKL-AMQ--EFMILPIGASTFKEAMKMGV-EVYHHLKAVIKKKYGQDATNVGDEGGF 218 (445)
Q Consensus 143 ~G~~~~~ip~p~~~~~~gg~~~~~~~-~~~--e~~~~p~~~~~~~ea~~~~~-~~~~~~k~~lk~k~G~~~~~~~~~g~~ 218 (445)
|..++++|++......++.+-.... +.. .+...+..++..+++.+... +||+++| .|+|.
T Consensus 131 -G~~r~~v~~ya~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~K----iKvG~----------- 194 (395)
T cd03323 131 -GGQRDSVPFLAYLFYKGDRHKTDLPYPWFRDRWGEALTPEGVVRLARAAIDRYGFKSFK----LKGGV----------- 194 (395)
T ss_pred -CCccCeEEEEEEeeeccccccccccccccccccccCCCHHHHHHHHHHHHHhcCCcEEE----EecCC-----------
Confidence 9767778774321111110100000 000 00000111223344444433 3676553 34441
Q ss_pred CCCccCchHHHHHHHHHHHhcCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCee
Q 013317 219 APNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIV 298 (445)
Q Consensus 219 ~~~~~~~~~~l~~v~~ai~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~ 298 (445)
.+.+.+.+.++++|+++ +++.|++|+ |+.||.++++++.. .+++ ++.
T Consensus 195 -~~~~~di~~v~avRea~------~~~~l~vDa------------------------N~~w~~~~A~~~~~-~l~~-~l~ 241 (395)
T cd03323 195 -LPGEEEIEAVKALAEAF------PGARLRLDP------------------------NGAWSLETAIRLAK-ELEG-VLA 241 (395)
T ss_pred -CCHHHHHHHHHHHHHhC------CCCcEEEeC------------------------CCCcCHHHHHHHHH-hcCc-CCC
Confidence 11122344555555443 479999999 46789999999854 5788 999
Q ss_pred EEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEE
Q 013317 299 SIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVM 378 (445)
Q Consensus 299 ~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~ 378 (445)
|||||++ |++++++|+++++ +||++||+ +++.++++++++.+++|++|+|++++||||+++|++++|+++|++++
T Consensus 242 ~iEeP~~--d~~~~~~L~~~~~--~PIa~dEs-~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~kia~~A~~~gi~~~ 316 (395)
T cd03323 242 YLEDPCG--GREGMAEFRRATG--LPLATNMI-VTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRVAQVCETWGLGWG 316 (395)
T ss_pred EEECCCC--CHHHHHHHHHhcC--CCEEcCCc-ccCHHHHHHHHHcCCCcEEeeccccccCHHHHHHHHHHHHHcCCeEE
Confidence 9999998 9999999999998 99999998 46799999999999999999999999999999999999999999986
Q ss_pred ecCCCCCChhHHH--HHHHhhh
Q 013317 379 ASHRSGETEDTFI--ADLSVGL 398 (445)
Q Consensus 379 ~~~~~~et~~~~~--~~la~a~ 398 (445)
+++ +.|+.++.+ +|++.+.
T Consensus 317 ~h~-~~e~~i~~aa~~hlaaa~ 337 (395)
T cd03323 317 MHS-NNHLGISLAMMTHVAAAA 337 (395)
T ss_pred Eec-CcccHHHHHHHHHHHHhC
Confidence 544 578876654 5555543
No 30
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=100.00 E-value=6.9e-42 Score=346.95 Aligned_cols=282 Identities=20% Similarity=0.265 Sum_probs=208.6
Q ss_pred CeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHHHHhHhhhccCCCCCCHHHHHHHHHHhhc
Q 013317 19 PTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNVNSIIGPALVGKDPTEQTQIDNFMVQQLD 98 (445)
Q Consensus 19 ~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~~~i~~~l~~~l~ 98 (445)
..++|+|+||+|++|||.++..... ..+ ..... ..+++.++|+||.+++.+|+.|.+...
T Consensus 30 ~~v~v~i~~d~G~~G~GE~~~~~~~--------------~~~---~~~~~---~~~~~~l~g~d~~~i~~~~~~~~~~~~ 89 (372)
T COG4948 30 TRVIVEITTDDGIVGWGEAVPGGRA--------------RYG---EEAEA---VLLAPLLIGRDPFDIERIWQKLYRAGF 89 (372)
T ss_pred eEEEEEEEECCCceeeccccCcccc--------------cch---hhhhH---HHHHHHhcCCCHHHHHHHHHHHHHhcc
Confidence 4699999999999999965542110 001 11111 168999999999999999998883211
Q ss_pred cCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeecCCccCCCcccccceeeccC
Q 013317 99 GTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVINGGSHADNKLAMQEFMILPI 178 (445)
Q Consensus 99 ~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~gg~~~~~~~~~~e~~~~p~ 178 (445)
++.+++..+|++|||+||||+.||.+|+|||+||| |..++.+++ |++..++ +.
T Consensus 90 -------~~~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~~LLG---g~~r~~v~~--y~~~~~~---------------~~ 142 (372)
T COG4948 90 -------ARRGGITMAAISAVDIALWDLAGKALGVPVYKLLG---GKVRDEVRA--YASGGGG---------------ED 142 (372)
T ss_pred -------cccchHHHHHHHHHHHHHHHHHHhHcCCcHHHHcC---CceeeeEEE--EEecCCC---------------CC
Confidence 11344556899999999999999999999999999 988766666 5442211 00
Q ss_pred CcccHHHHHHHHH-HHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcCCCcceEEEEeccccccc
Q 013317 179 GASTFKEAMKMGV-EVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFY 257 (445)
Q Consensus 179 ~~~~~~ea~~~~~-~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G~~~~i~l~vD~~a~~~~ 257 (445)
..+...++.+... .||+.+| .|.|. .+.+.+.+.++++|+++ | +++.|++|+
T Consensus 143 ~~e~~~~~~~~~~~~G~~~~K----lk~g~------------~~~~~d~~~v~avRe~~---g--~~~~l~iDa------ 195 (372)
T COG4948 143 PEEMAAEAARALVELGFKALK----LKVGV------------GDGDEDLERVRALREAV---G--DDVRLMVDA------ 195 (372)
T ss_pred CHHHHHHHHHHHHhcCCceEE----ecCCC------------CchHHHHHHHHHHHHHh---C--CCceEEEeC------
Confidence 1222333333333 4676653 44442 11123466676676666 4 489999999
Q ss_pred cccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHH
Q 013317 258 DRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKR 337 (445)
Q Consensus 258 ~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~ 337 (445)
|+.||.++++++. +.++++++.|||||++++|++++++|++.++ +||++||++ .++++
T Consensus 196 ------------------n~~~~~~~A~~~~-~~l~~~~l~~iEeP~~~~d~~~~~~l~~~~~--~PIa~gEs~-~~~~~ 253 (372)
T COG4948 196 ------------------NGGWTLEEAIRLA-RALEEYGLEWIEEPLPPDDLEGLRELRAATS--TPIAAGESV-YTRWD 253 (372)
T ss_pred ------------------CCCcCHHHHHHHH-HHhcccCcceEECCCCccCHHHHHHHHhcCC--CCEecCccc-ccHHH
Confidence 4678899999875 4578899999999999999999999999988 999999985 67999
Q ss_pred HHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhc
Q 013317 338 VEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLA 399 (445)
Q Consensus 338 ~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~ 399 (445)
++++++.+++|++|||++++||||++++++++|+.+++.+ .+|. ++..+..+.++++..
T Consensus 254 ~~~l~~~~a~div~~d~~~~GGite~~kia~~A~~~~~~v-~~h~--~~~i~~aa~~hla~~ 312 (372)
T COG4948 254 FRRLLEAGAVDIVQPDLARVGGITEALKIAALAEGFGVMV-GPHV--EGPISLAAALHLAAA 312 (372)
T ss_pred HHHHHHcCCCCeecCCccccCCHHHHHHHHHHHHHhCCce-eccC--chHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999888885 4664 366665554444433
No 31
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=100.00 E-value=9.1e-41 Score=342.64 Aligned_cols=312 Identities=14% Similarity=0.122 Sum_probs=213.2
Q ss_pred ceeEEEEEEEe-------cCC-----CCCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHH
Q 013317 3 TINAVKARQIF-------DSR-----GNPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNV 70 (445)
Q Consensus 3 ~I~~v~~~~i~-------~~~-----g~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i 70 (445)
.||.+++.+|. +.. ....++|+|+||+|++|||+++.+ ++. ...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~v~Td~Gi~G~GEa~~~--------------------~~~---~~~l 61 (441)
T TIGR03247 5 VVTEMRVIPVAGHDSMLLNLSGAHAPFFTRNIVILTDSSGNTGVGEVPGG--------------------EKI---RATL 61 (441)
T ss_pred EEeEEEEEeeccccchhccccccCCCcceEEEEEEEECCCCeEEEeCCCc--------------------HHH---HHHH
Confidence 46777777762 111 235699999999999999875421 112 2334
Q ss_pred HHhHhhhccCCCCCCHHHHHHHHHHhhccCCCcccccccc------ccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhC
Q 013317 71 NSIIGPALVGKDPTEQTQIDNFMVQQLDGTVNEWGWCKQK------LGANAILAVSLAVCKAGAMVKKIPLYQHIANLAG 144 (445)
Q Consensus 71 ~~~l~p~LiG~d~~~~~~i~~~l~~~l~~~~~~~~~~~~~------~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G 144 (445)
+ .++|.|+|+||.+++.+|+.|++.+... . ..+++. ....|++||||||||+.||.+|+|||+||| |
T Consensus 62 ~-~lap~LiG~dp~~~e~i~~~m~~~~~~~-~--~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~~LLG---g 134 (441)
T TIGR03247 62 E-DARPLVVGKPLGEYQNVLNDVRATFADR-D--AGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVAALLG---E 134 (441)
T ss_pred H-HHHHHhcCCCHHHHHHHHHHHHHHhhcc-c--ccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHHHHhC---C
Confidence 4 6999999999999999999997322100 0 000111 124699999999999999999999999998 5
Q ss_pred C-CcceeeeeeEEeecCCc-------cCCCccccccee-----eccCCcccHHHHHHHHHH-HHHHHHHHHHhhcCCCCc
Q 013317 145 N-KTLVLPVPAFNVINGGS-------HADNKLAMQEFM-----ILPIGASTFKEAMKMGVE-VYHHLKAVIKKKYGQDAT 210 (445)
Q Consensus 145 ~-~~~~ip~p~~~~~~gg~-------~~~~~~~~~e~~-----~~p~~~~~~~ea~~~~~~-~~~~~k~~lk~k~G~~~~ 210 (445)
. .++++|++.++. +.|. +.++-....... ....+++..+++.+...+ ||+++| .|+|.
T Consensus 135 g~~r~~vp~y~~~~-~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~a~K----iKvG~--- 206 (441)
T TIGR03247 135 GQQRDEVEMLGYLF-FIGDRKRTSLPYRSGPQDDDDWFRLRHEEALTPEAVVRLAEAAYDRYGFRDFK----LKGGV--- 206 (441)
T ss_pred CCccceEEEeeeee-eccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHhcCCCEEE----EecCC---
Confidence 3 466777754322 1110 000000000000 000112334455544443 676653 45442
Q ss_pred ccCCCCCCCCCccCchHHHHHHHHHHHhcCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHH
Q 013317 211 NVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRS 290 (445)
Q Consensus 211 ~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~ 290 (445)
.+.+.+.+.++++|+++ +++.|++|+ |+.||.++++++..
T Consensus 207 ---------~~~~~Di~~v~avRea~------~d~~L~vDA------------------------N~~wt~~~Ai~~~~- 246 (441)
T TIGR03247 207 ---------LRGEEEIEAVTALAKRF------PQARITLDP------------------------NGAWSLDEAIALCK- 246 (441)
T ss_pred ---------CChHHHHHHHHHHHHhC------CCCeEEEEC------------------------CCCCCHHHHHHHHH-
Confidence 11122344454444432 579999999 57789999999855
Q ss_pred hhhcCCeeEEECCCCccC----HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHH
Q 013317 291 FISDHPIVSIEDPFDQDD----WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEA 366 (445)
Q Consensus 291 ~~~~~~i~~iEdP~~~~D----~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i 366 (445)
.++++ +.|||||++++| ++++++|+++++ +||++||+ ++++++++++++.+++|++|+|+. +||||+++++
T Consensus 247 ~Le~~-~~~iEePv~~~d~~~~~~~la~Lr~~~~--iPIa~dEs-~~~~~~~~~li~~~avdi~~~d~~-~gGIt~~~kI 321 (441)
T TIGR03247 247 DLKGV-LAYAEDPCGAEQGYSGREVMAEFRRATG--LPTATNMI-ATDWRQMGHALQLQAVDIPLADPH-FWTMQGSVRV 321 (441)
T ss_pred Hhhhh-hceEeCCCCcccccchHHHHHHHHHhCC--CCEEcCCc-cCCHHHHHHHHHhCCCCEEeccCC-cchHHHHHHH
Confidence 57889 999999999998 999999999998 99999998 567999999999999999999995 6789999999
Q ss_pred HHHHHHcCCcEEecCCCCCChhH--HHHHHHhhh
Q 013317 367 VKMAKRAGWGVMASHRSGETEDT--FIADLSVGL 398 (445)
Q Consensus 367 ~~~A~~~g~~~~~~~~~~et~~~--~~~~la~a~ 398 (445)
+++|+++|+.+ .+|...++.++ +.+||+.++
T Consensus 322 a~lA~a~Gi~v-~~h~~~~~~i~~aa~~hlaaa~ 354 (441)
T TIGR03247 322 AQMCHDWGLTW-GSHSNNHFDISLAMFTHVAAAA 354 (441)
T ss_pred HHHHHHcCCEE-EEeCCccCHHHHHHHHHHHHhC
Confidence 99999999996 46755566664 445666554
No 32
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=4.1e-39 Score=319.85 Aligned_cols=277 Identities=21% Similarity=0.264 Sum_probs=204.7
Q ss_pred CeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHHHHhHhhhccCCCCCCHHHHHHHHHHhhc
Q 013317 19 PTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNVNSIIGPALVGKDPTEQTQIDNFMVQQLD 98 (445)
Q Consensus 19 ~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~~~i~~~l~~~l~ 98 (445)
..++|||+|+ |++|||++.... .|.+++.......+++ +.|.|+|+|+. ++++++.|.+...
T Consensus 26 ~~~~v~v~t~-G~~G~GE~~~~~---------------~~~~~~~~~~~~~~~~-~~~~l~G~~~~-~~~~~~~l~~~~~ 87 (316)
T cd03319 26 ENVIVEIELD-GITGYGEAAPTP---------------RVTGETVESVLAALKS-VRPALIGGDPR-LEKLLEALQELLP 87 (316)
T ss_pred eEEEEEEEEC-CEEEEEeecCCC---------------CCCCCCHHHHHHHHHH-HHHHhcCCCch-HHHHHHHHHHhcc
Confidence 5689999999 999999653211 0234445555555655 59999999999 9999999873211
Q ss_pred cCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeecCCccCCCcccccceeeccC
Q 013317 99 GTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVINGGSHADNKLAMQEFMILPI 178 (445)
Q Consensus 99 ~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~gg~~~~~~~~~~e~~~~p~ 178 (445)
+ ...|++|||+||||+.||.+|+|+|+||| |..++++|+ +..+.++ +.
T Consensus 88 ----------~--~~~a~~aid~AlwDl~gk~~g~pv~~ll~---g~~~~~~~~--~~~~~~~-------~~-------- 135 (316)
T cd03319 88 ----------G--NGAARAAVDIALWDLEAKLLGLPLYQLWG---GGAPRPLET--DYTISID-------TP-------- 135 (316)
T ss_pred ----------C--ChHHHHHHHHHHHHHHHHHcCCcHHHHcC---CCCCCCcee--EEEEeCC-------CH--------
Confidence 1 23599999999999999999999999977 666667765 3222221 11
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcCCCcceEEEEecccccccc
Q 013317 179 GASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYD 258 (445)
Q Consensus 179 ~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G~~~~i~l~vD~~a~~~~~ 258 (445)
+...+++.+...+||+.+ |.|+|. +.+.+.+.++.+|++ .| ++.|++|+
T Consensus 136 -~~~~~~~~~~~~~Gf~~i----Kik~g~-------------~~~~d~~~v~~lr~~---~g---~~~l~vD~------- 184 (316)
T cd03319 136 -EAMAAAAKKAAKRGFPLL----KIKLGG-------------DLEDDIERIRAIREA---AP---DARLRVDA------- 184 (316)
T ss_pred -HHHHHHHHHHHHcCCCEE----EEEeCC-------------ChhhHHHHHHHHHHh---CC---CCeEEEeC-------
Confidence 112334444444456554 344441 112234444444443 33 58899999
Q ss_pred ccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHH
Q 013317 259 RKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRV 338 (445)
Q Consensus 259 ~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~ 338 (445)
|++|+.+++++++ +.++++++.|||||++++|++++++|+++++ +||++||+ +.+++++
T Consensus 185 -----------------n~~~~~~~A~~~~-~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~--ipIa~~E~-~~~~~~~ 243 (316)
T cd03319 185 -----------------NQGWTPEEAVELL-RELAELGVELIEQPVPAGDDDGLAYLRDKSP--LPIMADES-CFSAADA 243 (316)
T ss_pred -----------------CCCcCHHHHHHHH-HHHHhcCCCEEECCCCCCCHHHHHHHHhcCC--CCEEEeCC-CCCHHHH
Confidence 4568889999885 5578999999999999999999999999988 99999998 5779999
Q ss_pred HHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHH--HHHhhh
Q 013317 339 EKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIA--DLSVGL 398 (445)
Q Consensus 339 ~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~--~la~a~ 398 (445)
+++++.+++|++|+|++++||+|++++++++|+++|++++++++ .|++++..+ ||+.++
T Consensus 244 ~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~-~~~~i~~~a~~hl~a~~ 304 (316)
T cd03319 244 ARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCM-VESSLSIAAAAHLAAAK 304 (316)
T ss_pred HHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECc-hhhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999877654 488776544 555543
No 33
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=100.00 E-value=1e-36 Score=302.70 Aligned_cols=263 Identities=16% Similarity=0.182 Sum_probs=191.1
Q ss_pred CCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHHHHhHhhhccCCCCCCHHHHHHHHHHhh
Q 013317 18 NPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNVNSIIGPALVGKDPTEQTQIDNFMVQQL 97 (445)
Q Consensus 18 ~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~~~i~~~l~~~l 97 (445)
+.+++|+|+ ++|++|||++.... .| +++..++...+. .+.|.|+ . ..+.+.+++ +
T Consensus 27 ~~~~lv~l~-~~G~~G~GE~~p~~---------------~~-~~~~~~~~~~l~-~~~~~l~-~-~~~~~~~~~-----~ 81 (321)
T PRK15129 27 ARVVVVELE-EEGIKGTGECTPYP---------------RY-GESDASVMAQIM-SVVPQLE-K-GLTREALQK-----L 81 (321)
T ss_pred eeEEEEEEE-eCCeEEEEeeCCcC---------------CC-CCCHHHHHHHHH-HHHHHHh-C-CCCHHHHHh-----h
Confidence 356999998 68999999543211 13 355666666664 6889987 2 223333222 1
Q ss_pred ccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeecCCccCCCcccccceeecc
Q 013317 98 DGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVINGGSHADNKLAMQEFMILP 177 (445)
Q Consensus 98 ~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~gg~~~~~~~~~~e~~~~p 177 (445)
.+ ...|++||||||||+.||..|+|||+||| |..++++|+ +.+++.+
T Consensus 82 ~~------------~~~a~~aid~AlwDl~gk~~~~pl~~llG---g~~~~~i~~--~~~~~~~---------------- 128 (321)
T PRK15129 82 LP------------AGAARNAVDCALWDLAARQQQQSLAQLIG---ITLPETVTT--AQTVVIG---------------- 128 (321)
T ss_pred cc------------ChHHHHHHHHHHHHHHHHHcCCcHHHHcC---CCCCCceeE--EEEecCC----------------
Confidence 11 13599999999999999999999999999 876666665 3332111
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcCCCcceEEEEeccccccc
Q 013317 178 IGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFY 257 (445)
Q Consensus 178 ~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G~~~~i~l~vD~~a~~~~ 257 (445)
.+++.++++.+...+||+++| .|+|. +.+.+.++++|+++ +++.|++|+
T Consensus 129 ~~~~~~~~~~~~~~~G~~~~K----lKv~~---------------~~d~~~v~avr~~~------~~~~l~vDa------ 177 (321)
T PRK15129 129 TPEQMANSASALWQAGAKLLK----VKLDN---------------HLISERMVAIRSAV------PDATLIVDA------ 177 (321)
T ss_pred CHHHHHHHHHHHHHcCCCEEE----EeCCC---------------chHHHHHHHHHHhC------CCCeEEEEC------
Confidence 012234555555556676553 34321 11345565555543 478999999
Q ss_pred cccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHH
Q 013317 258 DRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKR 337 (445)
Q Consensus 258 ~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~ 337 (445)
|++||.+++++++. .++++++.||||||+++|++++++++ ++ +||++||+. .++++
T Consensus 178 ------------------N~~w~~~~A~~~~~-~l~~~~i~~iEqP~~~~~~~~l~~~~--~~--~pia~dEs~-~~~~d 233 (321)
T PRK15129 178 ------------------NESWRAEGLAARCQ-LLADLGVAMLEQPLPAQDDAALENFI--HP--LPICADESC-HTRSS 233 (321)
T ss_pred ------------------CCCCCHHHHHHHHH-HHHhcCceEEECCCCCCcHHHHHHhc--cC--CCEecCCCC-CCHHH
Confidence 57789999998754 57899999999999999999988765 35 999999985 67999
Q ss_pred HHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHh
Q 013317 338 VEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSV 396 (445)
Q Consensus 338 ~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~ 396 (445)
++++. +++|++|+|++++|||+++++++++|+++|+++++|++ .||..+.++.+++
T Consensus 234 ~~~~~--~~~d~v~~k~~~~GGi~~a~~i~~~a~~~gi~~~~g~~-~es~i~~~a~~~l 289 (321)
T PRK15129 234 LKALK--GRYEMVNIKLDKTGGLTEALALATEARAQGFALMLGCM-LCTSRAISAALPL 289 (321)
T ss_pred HHHHH--hhCCEEEeCchhhCCHHHHHHHHHHHHHcCCcEEEecc-hHHHHHHHHHHHH
Confidence 99984 79999999999999999999999999999999999884 6887766565555
No 34
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=100.00 E-value=1.6e-34 Score=279.92 Aligned_cols=209 Identities=20% Similarity=0.239 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeecCCccCCCcccccceeeccCCcccHHHHHHHHHHHHHH
Q 013317 117 LAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVINGGSHADNKLAMQEFMILPIGASTFKEAMKMGVEVYHH 196 (445)
Q Consensus 117 sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~ea~~~~~~~~~~ 196 (445)
+|||+||||+.||.+|+|+|+|+| | .++++|+ |.++..+ +. ++..+++.+...+||+.
T Consensus 46 ~aid~Al~Dl~gk~~g~pv~~llG---~-~~~~i~~--~~~~~~~-------~~---------~~~~~~~~~~~~~G~~~ 103 (265)
T cd03315 46 AAVDMALWDLWGKRLGVPVYLLLG---G-YRDRVRV--AHMLGLG-------EP---------AEVAEEARRALEAGFRT 103 (265)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHcC---C-CCCceEE--EEEecCC-------CH---------HHHHHHHHHHHHCCCCE
Confidence 799999999999999999999999 7 4566766 4333211 01 12234554445556655
Q ss_pred HHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcCCCcceEEEEeccccccccccCcceeecccCCCCCCC
Q 013317 197 LKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGS 276 (445)
Q Consensus 197 ~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n 276 (445)
+ |.|+|. +.+.+.+.++.+|+++ | +++.|++|+ |
T Consensus 104 ~----KiKvg~-------------~~~~d~~~v~~vr~~~---g--~~~~l~vDa------------------------n 137 (265)
T cd03315 104 F----KLKVGR-------------DPARDVAVVAALREAV---G--DDAELRVDA------------------------N 137 (265)
T ss_pred E----EEecCC-------------CHHHHHHHHHHHHHhc---C--CCCEEEEeC------------------------C
Confidence 4 344431 1122344555555443 4 579999999 4
Q ss_pred CCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCc
Q 013317 277 QKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 356 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k 356 (445)
++||.++++++. +.++++++.|||||++++|++++++|+++++ +||++||+. .++++++++++.+++|++++|+++
T Consensus 138 ~~~~~~~a~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~--ipia~dE~~-~~~~~~~~~i~~~~~d~v~~k~~~ 213 (265)
T cd03315 138 RGWTPKQAIRAL-RALEDLGLDYVEQPLPADDLEGRAALARATD--TPIMADESA-FTPHDAFRELALGAADAVNIKTAK 213 (265)
T ss_pred CCcCHHHHHHHH-HHHHhcCCCEEECCCCcccHHHHHHHHhhCC--CCEEECCCC-CCHHHHHHHHHhCCCCEEEEeccc
Confidence 678899999985 4578899999999999999999999999998 999999984 679999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHH--HHHhhh
Q 013317 357 IGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIA--DLSVGL 398 (445)
Q Consensus 357 ~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~--~la~a~ 398 (445)
+||||++++++++|+++|++++++++ .||.++..+ |+|.++
T Consensus 214 ~GGi~~~~~~~~~A~~~gi~~~~~~~-~~s~i~~~a~~hlaa~~ 256 (265)
T cd03315 214 TGGLTKAQRVLAVAEALGLPVMVGSM-IESGLGTLANAHLAAAL 256 (265)
T ss_pred ccCHHHHHHHHHHHHHcCCcEEecCc-cchHHHHHHHHHHHHhC
Confidence 99999999999999999999987764 588776555 555543
No 35
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=100.00 E-value=1.8e-33 Score=266.76 Aligned_cols=175 Identities=23% Similarity=0.327 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeecCCccCCCcccccceeeccCCcccHHHHHHHHHHHHHH
Q 013317 117 LAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVINGGSHADNKLAMQEFMILPIGASTFKEAMKMGVEVYHH 196 (445)
Q Consensus 117 sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~ea~~~~~~~~~~ 196 (445)
+|||+||||+.||.+|+|||++|| |..++++|+ |. +
T Consensus 45 ~aid~Al~Dl~gk~~~~pl~~llg---g~~~~~v~~--~~-------------------------~-------------- 80 (229)
T cd00308 45 SGIDMALWDLAAKALGVPLAELLG---GGSRDRVPA--YG-------------------------S-------------- 80 (229)
T ss_pred HHHHHHHHHHhHhHcCCcHHHHcC---CCCCCceec--cH-------------------------H--------------
Confidence 899999999999999999999999 976666665 10 0
Q ss_pred HHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcCCCcceEEEEeccccccccccCcceeecccCCCCCCC
Q 013317 197 LKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGS 276 (445)
Q Consensus 197 ~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n 276 (445)
.+.++.+|+++ | +++.|++|+ |
T Consensus 81 -----------------------------~~~i~~lr~~~---g--~~~~l~lDa------------------------N 102 (229)
T cd00308 81 -----------------------------IERVRAVREAF---G--PDARLAVDA------------------------N 102 (229)
T ss_pred -----------------------------HHHHHHHHHHh---C--CCCeEEEEC------------------------C
Confidence 11234455554 4 479999999 4
Q ss_pred CCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCc
Q 013317 277 QKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 356 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k 356 (445)
+.||.+++++++. .++++++.|||||++++|++++++|+++++ +||++||+ +++++++.++++.+++|++|+|+++
T Consensus 103 ~~~~~~~a~~~~~-~l~~~~i~~iEeP~~~~d~~~~~~L~~~~~--~pIa~dEs-~~~~~~~~~~~~~~~~d~~~~k~~~ 178 (229)
T cd00308 103 GAWTPKEAIRLIR-ALEKYGLAWIEEPCAPDDLEGYAALRRRTG--IPIAADES-VTTVDDALEALELGAVDILQIKPTR 178 (229)
T ss_pred CCCCHHHHHHHHH-HhhhcCCCeEECCCCccCHHHHHHHHhhCC--CCEEeCCC-CCCHHHHHHHHHcCCCCEEecCccc
Confidence 6788999999865 578899999999999999999999999988 99999998 4779999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHcCCcEEecCCCCCChhH--HHHHHHhhh
Q 013317 357 IGSVTESIEAVKMAKRAGWGVMASHRSGETEDT--FIADLSVGL 398 (445)
Q Consensus 357 ~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~--~~~~la~a~ 398 (445)
+||++++++++++|+++|++++++++ .|+..+ +.+|++.++
T Consensus 179 ~GGi~~~~~i~~~a~~~gi~~~~~~~-~~s~i~~~a~~hlaa~~ 221 (229)
T cd00308 179 VGGLTESRRAADLAEAFGIRVMVHGT-LESSIGTAAALHLAAAL 221 (229)
T ss_pred cCCHHHHHHHHHHHHHcCCEEeecCC-CCCHHHHHHHHHHHHhC
Confidence 99999999999999999999987764 577665 445665554
No 36
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1.2e-33 Score=273.49 Aligned_cols=203 Identities=20% Similarity=0.216 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeecCCccCCCcccccceeeccCCcccHHHHHHHHHHHHH
Q 013317 116 ILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVINGGSHADNKLAMQEFMILPIGASTFKEAMKMGVEVYH 195 (445)
Q Consensus 116 ~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~ea~~~~~~~~~ 195 (445)
++||||||||+.||.+| | |..++++|+ +.++.++ +. +..+++.+...+||+
T Consensus 49 ~aaid~AlwDl~gk~~g-------g---g~~~~~v~~--~~~~~~~-------~~----------~~~~~~~~~~~~Gf~ 99 (263)
T cd03320 49 AFGIESALANLEALLVG-------F---TRPRNRIPV--NALLPAG-------DA----------AALGEAKAAYGGGYR 99 (263)
T ss_pred HHHHHHHHhcccccccC-------C---CCCccCcce--eEEecCC-------CH----------HHHHHHHHHHhCCCC
Confidence 38999999999999999 7 776666666 4443221 00 122344444455676
Q ss_pred HHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcCCCcceEEEEeccccccccccCcceeecccCCCCCC
Q 013317 196 HLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDG 275 (445)
Q Consensus 196 ~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~ 275 (445)
.+ |.|+|. .+.+.+.+.++.+|++ +| +++.|++|+
T Consensus 100 ~~----KiKvg~------------~~~~~d~~~v~~vr~~---~g--~~~~l~vDa------------------------ 134 (263)
T cd03320 100 TV----KLKVGA------------TSFEEDLARLRALREA---LP--ADAKLRLDA------------------------ 134 (263)
T ss_pred EE----EEEECC------------CChHHHHHHHHHHHHH---cC--CCCeEEEeC------------------------
Confidence 55 345541 1112234445444443 34 579999999
Q ss_pred CCCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccC
Q 013317 276 SQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN 355 (445)
Q Consensus 276 n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~ 355 (445)
|+.||.+++++++ +.++++++.|||||++++|++++++|+ ++ +||++||+. .+++++.++++.+++|++|+|++
T Consensus 135 N~~w~~~~A~~~~-~~l~~~~i~~iEqP~~~~d~~~~~~l~--~~--~PIa~dEs~-~~~~~~~~~~~~~~~d~v~~k~~ 208 (263)
T cd03320 135 NGGWSLEEALAFL-EALAAGRIEYIEQPLPPDDLAELRRLA--AG--VPIALDESL-RRLDDPLALAAAGALGALVLKPA 208 (263)
T ss_pred CCCCCHHHHHHHH-HhhcccCCceEECCCChHHHHHHHHhh--cC--CCeeeCCcc-ccccCHHHHHhcCCCCEEEECch
Confidence 4678899999975 457889999999999999999999999 66 999999984 66899999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHH--HHHHHhhhc
Q 013317 356 QIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTF--IADLSVGLA 399 (445)
Q Consensus 356 k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~--~~~la~a~~ 399 (445)
++||+|++++++++|+++|++++++++ .|+.++. ++|++.++.
T Consensus 209 ~~GGit~~~~i~~~a~~~gi~~~~~~~-~es~ig~aa~~hlaa~~~ 253 (263)
T cd03320 209 LLGGPRALLELAEEARARGIPAVVSSA-LESSIGLGALAHLAAALP 253 (263)
T ss_pred hcCCHHHHHHHHHHHHHcCCCEEEEcc-hhhHHHHHHHHHHHHhCC
Confidence 999999999999999999999988874 5887665 456655543
No 37
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=100.00 E-value=8.2e-33 Score=272.77 Aligned_cols=258 Identities=16% Similarity=0.146 Sum_probs=184.7
Q ss_pred CCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHHHHhHhhhccCCCCCCHHHHHHHHHHhh
Q 013317 18 NPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNVNSIIGPALVGKDPTEQTQIDNFMVQQL 97 (445)
Q Consensus 18 ~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~~~i~~~l~~~l 97 (445)
+..++|+|+ ++|++|||.+... +.|++++..++...+. .+.|.|+|+++.++.+ .
T Consensus 21 ~~~~iv~l~-~~G~~G~GE~~p~---------------~~~~~et~~~~~~~l~-~l~~~l~~~~~~~~~~-------~- 75 (307)
T TIGR01927 21 REGLIVRLT-DEGRTGWGEIAPL---------------PGFGTETLAEALDFCR-ALIEEITRGDIEAIDD-------Q- 75 (307)
T ss_pred eeEEEEEEE-ECCcEEEEEeecC---------------CCCCcccHHHHHHHHH-HHHHHhcccchhhccc-------c-
Confidence 357999999 5699999854321 1267888888887777 4889999988753321 1
Q ss_pred ccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeecCCccCCCcccccceeecc
Q 013317 98 DGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVINGGSHADNKLAMQEFMILP 177 (445)
Q Consensus 98 ~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~gg~~~~~~~~~~e~~~~p 177 (445)
. ..+++|||+||||+.||. +.|. ....| .+++ ..+ +
T Consensus 76 ~--------------~~~~~aie~Al~Dl~~k~-~~~~-----------~~~~~--~~~l-~~~-------~-------- 111 (307)
T TIGR01927 76 L--------------PSVAFGFESALIELESGD-ELPP-----------ASNYY--VALL-PAG-------D-------- 111 (307)
T ss_pred C--------------cHHHHHHHHHHHHHhcCC-CCCc-----------ccccc--eeec-cCC-------C--------
Confidence 0 247999999999999987 2211 11122 1221 111 0
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcCCCcceEEEEeccccccc
Q 013317 178 IGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFY 257 (445)
Q Consensus 178 ~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G~~~~i~l~vD~~a~~~~ 257 (445)
+++..+++.+ .+||+.+ |.|+|. .+.+.+.+.++.+|++ .| +++.|++|+
T Consensus 112 -~~~~~~~~~~--~~Gf~~~----KiKvG~------------~~~~~d~~~v~~vr~~---~g--~~~~l~vDa------ 161 (307)
T TIGR01927 112 -PALLLLRSAK--AEGFRTF----KWKVGV------------GELAREGMLVNLLLEA---LP--DKAELRLDA------ 161 (307)
T ss_pred -HHHHHHHHHH--hCCCCEE----EEEeCC------------CChHHHHHHHHHHHHH---cC--CCCeEEEeC------
Confidence 1112233332 4566554 345441 1112234455555444 34 569999999
Q ss_pred cccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhc---CCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccC
Q 013317 258 DRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISD---HPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTN 334 (445)
Q Consensus 258 ~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~---~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~ 334 (445)
|+.||.++++++.. .+++ +++.|||||++.+ +++++|+++++ +||++||++ .+
T Consensus 162 ------------------N~~w~~~~A~~~~~-~l~~~~~~~i~~iEqP~~~~--~~~~~l~~~~~--~Pia~dEs~-~~ 217 (307)
T TIGR01927 162 ------------------NGGLSPDEAQQFLK-ALDPNLRGRIAFLEEPLPDA--DEMSAFSEATG--TAIALDESL-WE 217 (307)
T ss_pred ------------------CCCCCHHHHHHHHH-hcccccCCCceEEeCCCCCH--HHHHHHHHhCC--CCEEeCCCc-CC
Confidence 56789999999854 5787 8999999999866 99999999998 999999985 66
Q ss_pred HHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhH--HHHHHHhhhc
Q 013317 335 PKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDT--FIADLSVGLA 399 (445)
Q Consensus 335 ~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~--~~~~la~a~~ 399 (445)
++++.++++.+++|++++|++++||++++++++++|+++|++++++|+ .||.++ +++||+.+++
T Consensus 218 ~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~-~es~i~~aa~~hlaa~~~ 283 (307)
T TIGR01927 218 LPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSV-FESSIALGQLARLAAKLS 283 (307)
T ss_pred hHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECc-cchHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999998875 588765 4557766654
No 38
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=100.00 E-value=9.1e-32 Score=266.96 Aligned_cols=259 Identities=14% Similarity=0.129 Sum_probs=179.5
Q ss_pred CCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHHHHhHhhhccCCCCCCHHHHHHHHHHhh
Q 013317 18 NPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNVNSIIGPALVGKDPTEQTQIDNFMVQQL 97 (445)
Q Consensus 18 ~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~~~i~~~l~~~l 97 (445)
+..++|+|+|++|++|||.+... +.|++++..++...++ .+.|.|.++ .+..... .+
T Consensus 28 ~~~~iV~l~~~~G~~G~GE~~p~---------------p~~~~et~~~~~~~l~-~l~~~l~~~------~~~~~~~-~~ 84 (320)
T PRK02714 28 REGIILRLTDETGKIGWGEIAPL---------------PWFGSETLEEALAFCQ-QLPGEITPE------QIFSIPD-AL 84 (320)
T ss_pred eEEEEEEEEeCCCCeEEEEecCC---------------CCCCcccHHHHHHHHH-hccccCCHH------HHHhhhh-cC
Confidence 36799999999999999854321 1367888888776665 477777543 2221111 11
Q ss_pred ccCCCccccccccccchhHHHHHHHHHH-HHHHhcCCchHHHHHhhhCCCcceeeeeeEEeecCCccCCCcccccceeec
Q 013317 98 DGTVNEWGWCKQKLGANAILAVSLAVCK-AGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVINGGSHADNKLAMQEFMIL 176 (445)
Q Consensus 98 ~~~~~~~~~~~~~~~~~A~sAvdiAlwD-~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~gg~~~~~~~~~~e~~~~ 176 (445)
..+++|+|+| || +.++..+ . . ..++|++..+.
T Consensus 85 ---------------~~~~~aie~A-~d~~~~~~~~-----------~-~--~~~~~~~~~i~----------------- 117 (320)
T PRK02714 85 ---------------PACQFGFESA-LENESGSRSN-----------V-T--LNPLSYSALLP----------------- 117 (320)
T ss_pred ---------------CHHHHHHHHH-HHHHhccccc-----------C-C--cCCCceeeecC-----------------
Confidence 2579999999 66 4333211 1 1 12344333321
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcCCCcceEEEEecccccc
Q 013317 177 PIGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEF 256 (445)
Q Consensus 177 p~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G~~~~i~l~vD~~a~~~ 256 (445)
.+++..+++.+...+||+.+ |.|+|. .+.+.+.+.++.+|++ +| +++.|++|+
T Consensus 118 -~~~~~~~~a~~~~~~G~~~~----KvKvG~------------~~~~~d~~~v~air~~---~g--~~~~l~vDa----- 170 (320)
T PRK02714 118 -AGEAALQQWQTLWQQGYRTF----KWKIGV------------DPLEQELKIFEQLLER---LP--AGAKLRLDA----- 170 (320)
T ss_pred -CCHHHHHHHHHHHHcCCCEE----EEEECC------------CChHHHHHHHHHHHHh---cC--CCCEEEEEC-----
Confidence 11233455655555677655 345542 1112233444444443 45 579999999
Q ss_pred ccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhc---CCeeEEECCCCccCHHHHHHHHHHhCCceEEEecccccc
Q 013317 257 YDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISD---HPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVT 333 (445)
Q Consensus 257 ~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~---~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~ 333 (445)
|++||.++++++.. .+++ +++.|||||++++|++++++|+++++ +||++||++ .
T Consensus 171 -------------------N~~w~~~~A~~~~~-~l~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~--~Pia~DEs~-~ 227 (320)
T PRK02714 171 -------------------NGGLSLEEAKRWLQ-LCDRRLSGKIEFIEQPLPPDQFDEMLQLSQDYQ--TPIALDESV-A 227 (320)
T ss_pred -------------------CCCCCHHHHHHHHH-HHhhccCCCccEEECCCCcccHHHHHHHHHhCC--CCEEECCcc-C
Confidence 56789999998754 4666 79999999999999999999999998 999999984 6
Q ss_pred CHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHH--HHHHHhhhcC
Q 013317 334 NPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTF--IADLSVGLAT 400 (445)
Q Consensus 334 ~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~--~~~la~a~~~ 400 (445)
++++++++++.+++|++|+|++++||+++++ ++|+++|++++++|+ .||+++. .+|||.++..
T Consensus 228 ~~~d~~~~~~~~a~d~v~ik~~k~GGi~~~~---~~a~~~gi~~~~~~~-~es~ig~aa~~hlaa~~~~ 292 (320)
T PRK02714 228 NLAQLQQCYQQGWRGIFVIKPAIAGSPSRLR---QFCQQHPLDAVFSSV-FETAIGRKAALALAAELSR 292 (320)
T ss_pred CHHHHHHHHHcCCCCEEEEcchhcCCHHHHH---HHHHHhCCCEEEEec-hhhHHHHHHHHHHHHhCCC
Confidence 7999999999999999999999999999654 679999999999875 5887764 4566666543
No 39
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=100.00 E-value=1.4e-31 Score=312.60 Aligned_cols=303 Identities=14% Similarity=0.106 Sum_probs=200.5
Q ss_pred CcceeEEEEEEEe--------cCCC------CCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCc-cHHH
Q 013317 1 MVTINAVKARQIF--------DSRG------NPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGR-GVLK 65 (445)
Q Consensus 1 ~~~I~~v~~~~i~--------~~~g------~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~-~~~~ 65 (445)
||||++|+.+.+. .+.| +..++|+|+|++|++|||++...... +|.. ...+ ....
T Consensus 930 ~~~I~~i~~~~~~lpl~~p~~~a~g~~~~~~r~~~lV~l~~ddG~~G~GEa~pl~~~--~et~--------~~~~~~l~~ 999 (1655)
T PLN02980 930 LCKISGMEYSLYRIQLCAPPTSASVDFSQFHREGFILSLSLEDGSVGFGEVAPLEIH--EEDL--------LDVEEQLRF 999 (1655)
T ss_pred cceEeEEEEEEEEeeccCCcEeeccccccceeeEEEEEEEECCCCEEEEecCCCCCC--cccc--------ccHHHHHHH
Confidence 5899999998772 2322 46799999999999999954322211 1110 0000 0111
Q ss_pred HHHHH----HHhHhhhccCCCCCCHHHHHHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHh
Q 013317 66 AVQNV----NSIIGPALVGKDPTEQTQIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIAN 141 (445)
Q Consensus 66 a~~~i----~~~l~p~LiG~d~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~ 141 (445)
....+ .+.++|.|+|+++ +.+|+.+. ... +.....|++||||||||+.||.+|+|||+|||
T Consensus 1000 ~~~~l~~~~~~~l~p~l~G~~~---~~~~~~l~-~~~----------~~~~psa~~ald~ALwDl~gk~~g~Pl~~LLG- 1064 (1655)
T PLN02980 1000 LLHVIKGAKISFMLPLLKGSFS---SWIWSELG-IPP----------SSIFPSVRCGLEMAILNAIAVRHGSSLLNILD- 1064 (1655)
T ss_pred HHHHHhhhhhhhhhHhhcCcch---HHHHHHhh-ccc----------cccchHHHHHHHHHHHHHHHHHcCCcHHHHhC-
Confidence 11112 1356899999954 44455443 111 12235799999999999999999999999999
Q ss_pred hhCCCcceee-------eeeEEeecCCccCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCC
Q 013317 142 LAGNKTLVLP-------VPAFNVINGGSHADNKLAMQEFMILPIGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGD 214 (445)
Q Consensus 142 ~~G~~~~~ip-------~p~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~ 214 (445)
|. +...+ +|++..+ ++. ..+++..+++.+...+||+.+ |.|+|..
T Consensus 1065 --g~-~~~~~~~~~~~~v~v~~~~-~~~--------------~~~~~~~~~a~~~~~~Gf~~~----KlKvG~~------ 1116 (1655)
T PLN02980 1065 --PY-QKDENGSEQSHSVQICALL-DSN--------------GSPLEVAYVARKLVEEGFSAI----KLKVGRR------ 1116 (1655)
T ss_pred --CC-CCCcceeccccceeeeecc-CCC--------------CCHHHHHHHHHHHHHcCCCEE----EEecCCC------
Confidence 73 22111 2222221 010 011223445555555666655 3454410
Q ss_pred CCCCCCCccCchHHHHHHHHHHHhcCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhc
Q 013317 215 EGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISD 294 (445)
Q Consensus 215 ~g~~~~~~~~~~~~l~~v~~ai~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~ 294 (445)
.+.+.+.+.++.+|++ +| +++.|++|+ |++||.+++++++. .+++
T Consensus 1117 -----~~~~~D~~~i~alRe~---~G--~~~~LrlDA------------------------N~~ws~~~A~~~~~-~L~~ 1161 (1655)
T PLN02980 1117 -----VSPIQDAAVIQEVRKA---VG--YQIELRADA------------------------NRNWTYEEAIEFGS-LVKS 1161 (1655)
T ss_pred -----CCHHHHHHHHHHHHHH---cC--CCCeEEEEC------------------------CCCCCHHHHHHHHH-HHhh
Confidence 0112234444444443 45 579999999 57789999999854 5788
Q ss_pred CCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHH-----HHHHHHhcCCCCEEEeccCccccHHHHHHHHHH
Q 013317 295 HPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPK-----RVEKAIKEKTCNALLLKVNQIGSVTESIEAVKM 369 (445)
Q Consensus 295 ~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~-----~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~ 369 (445)
+++.|||||++ +.+++++|+++++ +||++||+. .+++ .++++++.++. ++++|++++||++++++++++
T Consensus 1162 ~~i~~iEqPl~--~~~~l~~l~~~~~--iPIA~DEs~-~~~~~~~~~~~~~~i~~~~~-~i~iK~~~~GGit~~~~ia~~ 1235 (1655)
T PLN02980 1162 CNLKYIEEPVQ--DEDDLIKFCEETG--LPVALDETI-DKFEECPLRMLTKYTHPGIV-AVVIKPSVVGGFENAALIARW 1235 (1655)
T ss_pred cCCCEEECCCC--CHHHHHHHHHhCC--CCEEeCCCc-CCcccchHHHHHHHHHCCCe-EEEeChhhhCCHHHHHHHHHH
Confidence 99999999997 5789999999998 999999985 4444 36677776655 789999999999999999999
Q ss_pred HHHcCCcEEecCCCCCChhHH--HHHHHhhh
Q 013317 370 AKRAGWGVMASHRSGETEDTF--IADLSVGL 398 (445)
Q Consensus 370 A~~~g~~~~~~~~~~et~~~~--~~~la~a~ 398 (445)
|+++|+++++++ +.|+.++. .+|||.++
T Consensus 1236 A~~~gi~~~~~s-~~es~Ig~aA~~hlaa~~ 1265 (1655)
T PLN02980 1236 AQQHGKMAVISA-AYESGLGLSAYIQFASYL 1265 (1655)
T ss_pred HHHcCCeEEecC-cccCHHHHHHHHHHHHhc
Confidence 999999998887 46887765 45665553
No 40
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=99.97 E-value=3.9e-30 Score=255.41 Aligned_cols=252 Identities=16% Similarity=0.173 Sum_probs=177.6
Q ss_pred CCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHHHHhHhhhccCCCCCCHHHHHHHHHHhh
Q 013317 18 NPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNVNSIIGPALVGKDPTEQTQIDNFMVQQL 97 (445)
Q Consensus 18 ~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~~~i~~~l~~~l 97 (445)
+.+++|+|+ ++|++|||.+... +.|++++..++...+.+.+.|.+. .++.+. . ..
T Consensus 27 ~~~viV~l~-d~G~~G~GE~~p~---------------~~~~~et~~~~~~~l~~~~~~~~~-~~~~~~-------~-~~ 81 (322)
T PRK05105 27 RDGLVVQLR-EGEREGWGEIAPL---------------PGFSQETLEEAQEALLAWLNNWLA-GDCDDE-------L-SQ 81 (322)
T ss_pred eeeEEEEEE-ECCcEEEEEeCCC---------------CCCCccCHHHHHHHHHHHHHHhhc-Cccccc-------c-cc
Confidence 467999996 8999999954321 127788888888888887887654 444331 1 10
Q ss_pred ccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeecCCccCCCcccccceeecc
Q 013317 98 DGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVINGGSHADNKLAMQEFMILP 177 (445)
Q Consensus 98 ~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~gg~~~~~~~~~~e~~~~p 177 (445)
...+++++++|+||+.||..+.|++. .+++ +.+ +.
T Consensus 82 --------------~~~a~~~i~~Al~dl~gk~~~~~~~~-----------~~~l------~~~-------~~------- 116 (322)
T PRK05105 82 --------------YPSVAFGLSCALAELAGTLPQAANYR-----------TAPL------CYG-------DP------- 116 (322)
T ss_pred --------------CcHHHHHHHHHHHHhcCCCCCCCCcc-----------eeee------ecC-------CH-------
Confidence 12588999999999999988888751 1221 001 00
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcCCCcceEEEEeccccccc
Q 013317 178 IGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAASEFY 257 (445)
Q Consensus 178 ~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G~~~~i~l~vD~~a~~~~ 257 (445)
++..+++.+. +||+.+ |.|+|. .+.+.+.+.++.+|+++ +++.|++|+
T Consensus 117 --~~~~~~a~~~--~Gf~~~----KvKvG~------------~~~~~d~~~i~~vr~~~------~~~~l~vDa------ 164 (322)
T PRK05105 117 --DELILKLADM--PGEKVA----KVKVGL------------YEAVRDGMLVNLLLEAI------PDLKLRLDA------ 164 (322)
T ss_pred --HHHHHHHHHc--CCCCEE----EEEECC------------CCHHHHHHHHHHHHHhC------CCCeEEEEC------
Confidence 1223444433 566655 345541 11122344444444332 578999999
Q ss_pred cccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhc---CCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccC
Q 013317 258 DRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISD---HPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTN 334 (445)
Q Consensus 258 ~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~---~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~ 334 (445)
|+.||.+++++++. .+++ +++.|||||++. .+.+++|+++++ +||++||+. .+
T Consensus 165 ------------------N~~w~~~~A~~~~~-~l~~~~~~~i~~iEqP~~~--~~~~~~l~~~~~--~PIa~DEs~-~~ 220 (322)
T PRK05105 165 ------------------NRGWTLEKAQQFAK-YVPPDYRHRIAFLEEPCKT--PDDSRAFARATG--IAIAWDESL-RE 220 (322)
T ss_pred ------------------CCCCCHHHHHHHHH-HhhhhcCCCccEEECCCCC--HHHHHHHHHhCC--CCEEECCCC-Cc
Confidence 56789999999865 4677 999999999964 568999999998 999999985 55
Q ss_pred HHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHH--HHHHhhh
Q 013317 335 PKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFI--ADLSVGL 398 (445)
Q Consensus 335 ~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~--~~la~a~ 398 (445)
++ +...+ .+++|+++||++++||++++++++++|+++|++++++++ .||.++.+ +||+.++
T Consensus 221 ~~-~~~~~-~~~~d~i~ik~~k~GGi~~a~~i~~~A~~~gi~~~~~~~-~es~i~~aa~~hla~~~ 283 (322)
T PRK05105 221 PD-FQFEA-EPGVRAIVIKPTLTGSLEKCQELIEQAHALGLRAVISSS-IESSLGLTQLARLAAWL 283 (322)
T ss_pred hh-hhhhh-cCCCCEEEECccccCCHHHHHHHHHHHHHcCCcEEEECc-hhHHHHHHHHHHHHHhc
Confidence 64 44444 778999999999999999999999999999999998874 68877654 4665554
No 41
>PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A ....
Probab=99.97 E-value=9.6e-30 Score=217.83 Aligned_cols=131 Identities=66% Similarity=0.949 Sum_probs=114.3
Q ss_pred ceeEEEEEEEecCCCCCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCC-cccCCccHHHHHHHHHHhHhhhccCC
Q 013317 3 TINAVKARQIFDSRGNPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGG-WDYHGRGVLKAVQNVNSIIGPALVGK 81 (445)
Q Consensus 3 ~I~~v~~~~i~~~~g~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~-~~y~~~~~~~a~~~i~~~l~p~LiG~ 81 (445)
+|++|++|+|+||+|+|||+|+|+|++|.+|++++|+|+|+|.+|+.+++|.+ ..|.|+++..+++.|++.|+|.|+|+
T Consensus 1 ~I~~v~~r~IlDsrG~PTVEveV~~~~g~~~ra~~PsGaStG~~Ea~elrD~~~~~~~gkgV~~Av~~vn~~i~~~L~g~ 80 (132)
T PF03952_consen 1 TITKVKAREILDSRGNPTVEVEVFTSNGNVGRASVPSGASTGSHEAVELRDGDPERYGGKGVSKAVENVNEIIAPALIGL 80 (132)
T ss_dssp BEEEEEEEEEE-TTS-EEEEEEEEETTEEEEEEE--B-SSSSSSS-B---B-STTSGGGTBHHHHHHHHHHTHHHHHTTS
T ss_pred CeEEEEEEEEEcCCCCceEEEEEEECCcccceeccccccCCCccccccccCCCcceecCcccchhhhhHHHHHHHHHHhc
Confidence 69999999999999999999999999999999999999999999999999988 45999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHH
Q 013317 82 DPTEQTQIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHI 139 (445)
Q Consensus 82 d~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lL 139 (445)
+|.||++||+.|. .+++++| ++.+|.|++.|+|||++.+.|+..++|||+||
T Consensus 81 ~~~dQ~~iD~~L~-~lDgT~n-----k~~lGaNa~lavS~A~a~AaA~~~~~pL~~~l 132 (132)
T PF03952_consen 81 DPTDQEEIDQILI-ELDGTPN-----KSRLGANAILAVSLAVAKAAAAAKGIPLYRYL 132 (132)
T ss_dssp BTT-HHHHHHHHH-HHHTSTT-----STTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred chhhHHHhCccce-eccCChh-----hhcccchHHHHHHHHHHHHHHHHcCCChhhcC
Confidence 9999999999999 9999998 78999999999999999999999999999997
No 42
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=99.85 E-value=6.8e-21 Score=188.70 Aligned_cols=135 Identities=23% Similarity=0.330 Sum_probs=111.5
Q ss_pred chHHHHHHHHHHHhcCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhh-hcCCeeEEECC
Q 013317 225 SYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFI-SDHPIVSIEDP 303 (445)
Q Consensus 225 ~~~~l~~v~~ai~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~-~~~~i~~iEdP 303 (445)
+.+.++.+|++ .| +++.|++|+ |++||.+++++++. .+ +++++.|||||
T Consensus 120 Di~rv~avRe~---lG--pd~~LrvDA------------------------N~~ws~~~Ai~~~~-~L~e~~~l~~iEqP 169 (327)
T PRK02901 120 DVARVNAVRDA---LG--PDGRVRVDA------------------------NGGWSVDEAVAAAR-ALDADGPLEYVEQP 169 (327)
T ss_pred HHHHHHHHHHh---cC--CCCEEEEEC------------------------CCCCCHHHHHHHHH-HhhhccCceEEecC
Confidence 34445544444 46 689999999 46689999999865 46 67999999999
Q ss_pred CCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCC
Q 013317 304 FDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRS 383 (445)
Q Consensus 304 ~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~ 383 (445)
++ +++++++|+++++ +||++||+. ++.+++.++++.+++|++++|++++|||+++++ +|+++|+++++++ +
T Consensus 170 ~~--~~~~la~Lr~~~~--vPIA~DEs~-~~~~d~~~l~~~~a~dvi~ik~~~~GGit~~lk---iA~~~gi~v~v~s-~ 240 (327)
T PRK02901 170 CA--TVEELAELRRRVG--VPIAADESI-RRAEDPLRVARAGAADVAVLKVAPLGGVRAALD---IAEQIGLPVVVSS-A 240 (327)
T ss_pred CC--CHHHHHHHHHhCC--CCEEeCCCC-CCHHHHHHHHHcCCCCEEEeCcchhCCHHHHHH---HHHHcCCcEEEeC-C
Confidence 97 4899999999998 999999984 679999999999999999999999999999988 5789999998876 5
Q ss_pred CCChhHHHH--HHHhhh
Q 013317 384 GETEDTFIA--DLSVGL 398 (445)
Q Consensus 384 ~et~~~~~~--~la~a~ 398 (445)
.||+++..+ |++.++
T Consensus 241 ~es~ig~aA~lhlaaal 257 (327)
T PRK02901 241 LDTSVGIAAGLALAAAL 257 (327)
T ss_pred cccHHHHHHHHHHHHhC
Confidence 688776555 555554
No 43
>COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=99.80 E-value=6.6e-18 Score=157.58 Aligned_cols=338 Identities=19% Similarity=0.228 Sum_probs=228.7
Q ss_pred eEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHHHHhHhhhccCCCCCCHHHHHHHHHHhh-c
Q 013317 20 TVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNVNSIIGPALVGKDPTEQTQIDNFMVQQL-D 98 (445)
Q Consensus 20 ~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~~~i~~~l~~~l-~ 98 (445)
.+.|.+...+|..-+|-+.+..-.|.+.. +|-|. .+....+++..+.|.|+|+|..-.-.-...+. .+ +
T Consensus 52 ~lsv~lvLsdg~vv~GdcaaVQYSGAGgR------DpLF~---a~~~~~~~~~~v~p~LvgrDv~~~ldnA~vfe-~l~d 121 (410)
T COG3799 52 CLSVQLVLSDGAVVVGDCAAVQYSGAGGR------DPLFL---AEHFIPFLNDHVKPLLVGRDVDAFLDNARVFE-KLID 121 (410)
T ss_pred eeeEEEEEecCceeeccceeeEecCCCCC------Cchhh---hhhhHHHHhhhhhhhhhCccHHhhcchhHHhH-hhcc
Confidence 36777777777655552211010111211 11122 34556778999999999998765433333333 23 2
Q ss_pred cCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcceeeeeeEEeecCCcc-C-CCcccccceeec
Q 013317 99 GTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVINGGSH-A-DNKLAMQEFMIL 176 (445)
Q Consensus 99 ~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G~~~~~ip~p~~~~~~gg~~-~-~~~~~~~e~~~~ 176 (445)
+ ..+..+...+||.||.|+.+.+.+.--.+.+...++.++..-|+|+|.. +|... . -.+|-.+.+.++
T Consensus 122 ~---------~~LhtAvrYGvSQALl~Aaa~a~~tt~tevvcde~~lp~~te~vP~fgQ-SGd~R~~~vdkMiLK~vdVL 191 (410)
T COG3799 122 G---------NLLHTAVRYGVSQALLDAAALATGTTKTEVVCDEWQLPRVTESVPLFGQ-SGDDRYIAVDKMILKGVDVL 191 (410)
T ss_pred C---------CcchHHHHhhHHHHHHHHHHHhhccchheeehhhhCCCCcccccccccc-CcchhhhhHHHHHHhhcCcc
Confidence 2 3466788999999999999999999999999888888776677777754 22110 0 001112223333
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCchHHHHHHHHHHHhcCCCc-ceEEEEeccccc
Q 013317 177 PIGASTFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQESYEGFELLKTAIAKGGYIG-KIVIGMDVAASE 255 (445)
Q Consensus 177 p~~~~~~~ea~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~v~~ai~~~G~~~-~i~l~vD~~a~~ 255 (445)
|++-. .. . .++| ++-.+..+.++++.+.++..|-.+ .-.|.+|+
T Consensus 192 PHgLi-------------Ns----v-e~~G-------------~dG~~l~Eyv~Wls~R~~~~g~~gYhP~lH~DV---- 236 (410)
T COG3799 192 PHGLI-------------NS----V-EELG-------------FDGEKLREYVRWLSDRILSKGTSGYHPTLHIDV---- 236 (410)
T ss_pred chhhh-------------hh----H-HHhC-------------CchHHHHHHHHHHHHHHHhcCCCCCCccEEEee----
Confidence 32100 00 0 1122 222456888898888887655322 46788888
Q ss_pred cccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcC-C-eeEEECCCCc----cCHHHHHHHHHHh---CCceEEE
Q 013317 256 FYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDH-P-IVSIEDPFDQ----DDWEHYAELTGKI---GRHVQIV 326 (445)
Q Consensus 256 ~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~-~-i~~iEdP~~~----~D~~~~~~L~~~~---~~~~pI~ 326 (445)
|. ..... -++++....+|++++-+.. + ..+||-|++. ..++.++++++.+ +..+.|+
T Consensus 237 -YG----~iGe~---------fg~dp~r~a~yi~~l~~~a~~~pL~IEgP~DaGs~~aQI~~~a~i~~~L~~~Gs~v~IV 302 (410)
T COG3799 237 -YG----TIGEI---------FGMDPLRCAQYIASLEKEAQGLPLYIEGPVDAGSKPAQIRLLAAITKELTRLGSGVKIV 302 (410)
T ss_pred -hh----hhHHH---------hCCCHHHHHHHHHHHHhhCCCCceeeeccccCCCCHHHHHHHHHHHHHHhhcCCcceEe
Confidence 21 11111 1367778888877654432 2 5689999975 4677888888764 3348899
Q ss_pred eccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhH--HHHHHHhhhcCCc--
Q 013317 327 GDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDT--FIADLSVGLATGQ-- 402 (445)
Q Consensus 327 gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~--~~~~la~a~~~~~-- 402 (445)
.||+ |++.+|+..+.+.++++.||||...+|+|-+..+.+.+|..+.+...+|..+.||..+ +++|+|+|..+-+
T Consensus 303 aDEw-Cnt~~Di~~F~dA~a~h~VQiKTPDvGsi~~~~rAvlyC~~~~~~AYvGGtCnETdvSAr~cvHValAt~a~~mL 381 (410)
T COG3799 303 ADEW-CNTYQDIVDFTDAAACHMVQIKTPDVGSIHNIVRAVLYCNSHSMEAYVGGTCNETDVSARTCVHVALATRAMRML 381 (410)
T ss_pred ehhh-cccHHHHHHHHhhccccEEEecCCCcchHHHHHHHHhhhccCccceeecccccccchhhhhhhhhhhhhcHHHHh
Confidence 9999 5889999999999999999999999999999999999999999999999999999876 6889999987766
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHh
Q 013317 403 IKTGAPCRSERLAKYNQLLRIEEEL 427 (445)
Q Consensus 403 ~~~G~~~~~er~~k~n~ll~i~~~l 427 (445)
.|+|.-.+..--+..||+=|.-.-|
T Consensus 382 aKPGMGfDeg~~iV~NEmnRtlA~l 406 (410)
T COG3799 382 AKPGMGFDEGLDIVFNEMNRTLALL 406 (410)
T ss_pred cCCCCCchhHHHHHHHHHHHHHHHH
Confidence 4688877777888999877765433
No 44
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=99.79 E-value=7.8e-18 Score=152.09 Aligned_cols=186 Identities=24% Similarity=0.338 Sum_probs=135.1
Q ss_pred cCchHHHHHHHHHHHhcCCCc-ceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhc-CC-eeE
Q 013317 223 QESYEGFELLKTAIAKGGYIG-KIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISD-HP-IVS 299 (445)
Q Consensus 223 ~~~~~~l~~v~~ai~~~G~~~-~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~-~~-i~~ 299 (445)
++..+.++++++.+++.|..+ .-.|.+|+-. .....|. .+.+.+.+|+.++.+. .| -..
T Consensus 47 e~L~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVYG---------tiG~~f~---------~d~~~~adYl~~l~~aA~P~~L~ 108 (248)
T PF07476_consen 47 EKLLEYVKWLKDRIRELGDEDYRPVLHIDVYG---------TIGLAFD---------NDPDRMADYLAELEEAAAPFKLR 108 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSSTT---EEEEE-TT---------HHHHHTT---------T-HHHHHHHHHHHHHHHTTS-EE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccEEEEccc---------hHHHHhC---------CCHHHHHHHHHHHHHhcCCCeee
Confidence 567889999999999876543 5678889932 2222232 2678888888776543 44 347
Q ss_pred EECCCCccC----HHHHHHHHHHh---CCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHH
Q 013317 300 IEDPFDQDD----WEHYAELTGKI---GRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKR 372 (445)
Q Consensus 300 iEdP~~~~D----~~~~~~L~~~~---~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~ 372 (445)
||.|++..+ ++.+++||+.+ +.++.|++||+ |++.+|++.+.+.+++|+||||....|||.++.+++-+|+.
T Consensus 109 iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEW-CNT~eDI~~F~da~A~dmVQIKtPDLGgi~ntieAvlyCk~ 187 (248)
T PF07476_consen 109 IEGPMDAGSREAQIEALAELREELDRRGINVEIVADEW-CNTLEDIREFADAKAADMVQIKTPDLGGINNTIEAVLYCKE 187 (248)
T ss_dssp EE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT---SHHHHHHHHHTT-SSEEEE-GGGGSSTHHHHHHHHHHHH
T ss_pred eeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehh-cCCHHHHHHHHhcCCcCEEEecCCCccchhhHHHHHHHHHh
Confidence 999998764 66888888865 44589999999 68899999999999999999999999999999999999999
Q ss_pred cCCcEEecCCCCCChhH--HHHHHHhhhcCCcc--ccCCCCCchhHHHHHHHHHHHHHh
Q 013317 373 AGWGVMASHRSGETEDT--FIADLSVGLATGQI--KTGAPCRSERLAKYNQLLRIEEEL 427 (445)
Q Consensus 373 ~g~~~~~~~~~~et~~~--~~~~la~a~~~~~~--~~G~~~~~er~~k~n~ll~i~~~l 427 (445)
+|+.+.+|.++.||..| .++|+|+|+++.|+ |||.-.+.--+..+|||.|+-..+
T Consensus 188 ~gvgaY~GGtCNETd~SArv~~hvalAt~p~q~LaKPGMG~DEG~mIV~NEM~R~lal~ 246 (248)
T PF07476_consen 188 HGVGAYLGGTCNETDRSARVCVHVALATRPDQMLAKPGMGVDEGYMIVTNEMNRTLALL 246 (248)
T ss_dssp TT-EEEE---TTS-HHHHHHHHHHHHHCT-SEEE--SSSSSHHHHHHHHHHHHHHHHHH
T ss_pred cCCceeecccccccchhHHHHHHHHHhcCHHHHhcCCCCCccchHHHHHHHHHHHHHHh
Confidence 99999999999999877 57899999999886 588887888999999999987654
No 45
>PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A ....
Probab=99.71 E-value=7.2e-17 Score=136.92 Aligned_cols=99 Identities=20% Similarity=0.311 Sum_probs=78.0
Q ss_pred EEecCCC----CCeEEEEEEeCCCcEEEEeccCCCccccccceeeccCCcccCCccHHHHHHHHHHhHhhhccCCCCCCH
Q 013317 11 QIFDSRG----NPTVEVDVSLSDGTLARAAVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNVNSIIGPALVGKDPTEQ 86 (445)
Q Consensus 11 ~i~~~~g----~~~v~V~V~td~G~~G~g~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~ 86 (445)
++..+.+ ++.++|+|+|++|++|+|++.... + +.......+.+.+.|.|+|+++.++
T Consensus 15 Pf~~a~~t~~~~~~v~V~l~t~~G~~G~Ge~~~~~----------------~---~~~~~~~~~~~~l~~~l~g~~~~~~ 75 (117)
T PF02746_consen 15 PFKTARGTVSEREFVLVRLETDDGVVGWGEAFPSP----------------G---TAETVASALEDYLAPLLIGQDPDDI 75 (117)
T ss_dssp EEEETTEEEEEEEEEEEEEEETTSEEEEEEEESSS----------------S---SHHHHHHHHHHTHHHHHTTSBTTGH
T ss_pred CEEeeCEEEEEeEEEEEEEEECCCCEEEEEeeCCc----------------c---hhHHHHHHHHHHHHHHHhcCCHHHH
Confidence 4444554 367999999999999999654321 1 1344555678889999999999999
Q ss_pred HHHHHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHH
Q 013317 87 TQIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIA 140 (445)
Q Consensus 87 ~~i~~~l~~~l~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG 140 (445)
+.+++.+.+...+ ...|++|||+||||+.||.+|+|||+|||
T Consensus 76 ~~~~~~~~~~~~~------------~~~a~aaid~AlwDl~gK~~g~Pl~~LlG 117 (117)
T PF02746_consen 76 EDIWQELYRLIKG------------NPAAKAAIDMALWDLLGKIAGQPLYQLLG 117 (117)
T ss_dssp HHHHHHHHHHTSS------------HHHHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred HHHHHHHHHhccc------------hHHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 9999988732211 35799999999999999999999999997
No 46
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=99.36 E-value=4e-12 Score=96.70 Aligned_cols=66 Identities=27% Similarity=0.369 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEECCCCccC
Q 013317 229 FELLKTAIAKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIEDPFDQDD 308 (445)
Q Consensus 229 l~~v~~ai~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D 308 (445)
++.+|+++ | +++.|++|+ |+.||.++++++.. .++++ .|||||++++|
T Consensus 2 i~avr~~~---g--~~~~l~vDa------------------------n~~~~~~~a~~~~~-~l~~~--~~iEeP~~~~d 49 (67)
T PF01188_consen 2 IRAVREAV---G--PDIDLMVDA------------------------NQAWTLEEAIRLAR-ALEDY--EWIEEPLPPDD 49 (67)
T ss_dssp HHHHHHHH---S--TTSEEEEE-------------------------TTBBSHHHHHHHHH-HHGGG--SEEESSSSTTS
T ss_pred HHHHHHhh---C--CCCeEEEEC------------------------CCCCCHHHHHHHHH-HcChh--heeecCCCCCC
Confidence 44555554 6 579999999 46789999999855 57875 99999999999
Q ss_pred HHHHHHHHHHhCCceEEEec
Q 013317 309 WEHYAELTGKIGRHVQIVGD 328 (445)
Q Consensus 309 ~~~~~~L~~~~~~~~pI~gd 328 (445)
++++++|+++++ +||++|
T Consensus 50 ~~~~~~l~~~~~--~pia~d 67 (67)
T PF01188_consen 50 LDGLAELRQQTS--VPIAAD 67 (67)
T ss_dssp HHHHHHHHHHCS--SEEEES
T ss_pred HHHHHHHHHhCC--CCEEeC
Confidence 999999999998 999886
No 47
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=99.14 E-value=1.3e-10 Score=97.39 Aligned_cols=71 Identities=17% Similarity=0.244 Sum_probs=59.0
Q ss_pred ccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhcCC
Q 013317 328 DDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLATG 401 (445)
Q Consensus 328 de~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~ 401 (445)
||+ +.++++++++++.+++|++|+|++++||||++++++++|+++|+++++++ + ++..+..+.++++...+
T Consensus 1 gE~-~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~-~-~~~i~~aa~~hlaaa~~ 71 (111)
T PF13378_consen 1 GES-LFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHS-M-ESGIGLAASLHLAAALP 71 (111)
T ss_dssp STT-SSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBS-S-SSHHHHHHHHHHHHTST
T ss_pred CCC-CCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecC-C-CCcHHHHHHHHHHHhcC
Confidence 576 46799999999999999999999999999999999999999999987666 5 88776655555555444
No 48
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=98.96 E-value=7.2e-09 Score=94.53 Aligned_cols=139 Identities=21% Similarity=0.227 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhcCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhh-cC--CeeEEECCC
Q 013317 228 GFELLKTAIAKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFIS-DH--PIVSIEDPF 304 (445)
Q Consensus 228 ~l~~v~~ai~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~-~~--~i~~iEdP~ 304 (445)
.+..+-+++ +|.+|++|+| ..||+..+..| ++-+. +| .|.|+|+|+
T Consensus 146 ivnllLEai------PDL~LRLDAN------------------------RaWtp~Ka~~F-AkyV~p~~R~RIaFLEEPC 194 (321)
T COG1441 146 IVNLLLEAI------PDLHLRLDAN------------------------RAWTPLKAQQF-AKYVNPDYRSRIAFLEEPC 194 (321)
T ss_pred HHHHHHHhC------ccceeeeccc------------------------ccCChHHHHHH-HHhcCHHHHHHHHHHhccc
Confidence 445555666 8999999994 56788777766 33344 34 499999999
Q ss_pred CccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCC
Q 013317 305 DQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSG 384 (445)
Q Consensus 305 ~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~ 384 (445)
. ....-+++...++ +.|+=||+. .. .+|. +-....+..|.||+.-+|.+....+.++.|++.|+..++++ +.
T Consensus 195 k--t~aeSr~Fa~eTg--IAIAWDEs~-re-adF~-~e~e~gv~avVIKPTL~GSl~r~~eli~qAh~lGl~AVISS-Si 266 (321)
T COG1441 195 K--TRAESRAFARETG--IAIAWDESL-RE-ADFA-FEAEPGVRAVVIKPTLTGSLQRVRELVQQAHALGLTAVISS-SI 266 (321)
T ss_pred C--ChHHHHHHHHhcC--eeEeecchh-cc-cccc-cccCCCceEEEecccchhhHHHHHHHHHHHHhcCceeEeec-hh
Confidence 6 3455677888888 999999984 42 3343 22356789999999999999999999999999999998888 57
Q ss_pred CChh--HHHHHHHhhhcCCccccC
Q 013317 385 ETED--TFIADLSVGLATGQIKTG 406 (445)
Q Consensus 385 et~~--~~~~~la~a~~~~~~~~G 406 (445)
||+. +-.+-+|.= ..+...+|
T Consensus 267 ESSLGLtQLARiA~~-ltP~tvPG 289 (321)
T COG1441 267 ESSLGLTQLARIAAW-LTPNTVPG 289 (321)
T ss_pred hhhcCHHHHHHHHHH-hCCCCCCC
Confidence 7754 455555543 33444443
No 49
>PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=98.01 E-value=6.5e-05 Score=64.97 Aligned_cols=107 Identities=20% Similarity=0.222 Sum_probs=71.1
Q ss_pred CeEEEEEEeCCCcEEEE-eccCCCccccccceeeccCCcccCCccHHHHHHHHHHhHhhhccCCCCCCHHHHHHHHHHhh
Q 013317 19 PTVEVDVSLSDGTLARA-AVPSGASTGIYEALELRDGGWDYHGRGVLKAVQNVNSIIGPALVGKDPTEQTQIDNFMVQQL 97 (445)
Q Consensus 19 ~~v~V~V~td~G~~G~g-~~~~~~~~g~~e~~~~~d~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~~~i~~~l~~~l 97 (445)
..|.|.+.+++|.+.+| |+..-. -|.+..-+ -+. ....+..|++.++|.|+|+|..+..+.-+.+. .+
T Consensus 51 esisV~l~L~dG~va~GDCaaVQY-SGagGRDP------LF~---a~~~ip~ie~~v~p~L~g~d~~~Fr~~a~~~d-~~ 119 (159)
T PF05034_consen 51 ESISVMLVLEDGQVAYGDCAAVQY-SGAGGRDP------LFL---AEDFIPVIEKEVAPRLVGRDLSSFRENAEKFD-EL 119 (159)
T ss_dssp EEEEEEEEETTS-EEEEEE---TT-TTSTTS-S------------HHHHHHHHHHHTHHHHTT-B-S-CHHHHHHHH-H-
T ss_pred cEEEEEEEeCCCCEEEeeehheee-cccCCCCC------ccc---HHHHHHHHHhhccHHHcCCcHHHHHHHHHHHH-hc
Confidence 35899999999999998 442211 11122111 121 35567788999999999999999999988888 54
Q ss_pred ccCCCccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHhhhC
Q 013317 98 DGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAG 144 (445)
Q Consensus 98 ~~~~~~~~~~~~~~~~~A~sAvdiAlwD~~ak~~g~Pl~~lLG~~~G 144 (445)
. + ...++++...+|+.||.|+.|++.+.-..+.+...+|
T Consensus 120 ~---~-----g~rlhtAiRYGvsQALL~A~A~a~~~tmaeVi~~Ey~ 158 (159)
T PF05034_consen 120 V---D-----GKRLHTAIRYGVSQALLDAAAKAQRTTMAEVIAEEYG 158 (159)
T ss_dssp E---T-----TEE--HHHHHHHHHHHHHHHHHHCTS-HHHHHHHHCT
T ss_pred c---c-----CCcchhHHHHhHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 1 1 2467788999999999999999999999988875554
No 50
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=98.01 E-value=0.00012 Score=73.63 Aligned_cols=95 Identities=11% Similarity=0.159 Sum_probs=73.4
Q ss_pred HHHHh-cCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEE-----------
Q 013317 234 TAIAK-GGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIE----------- 301 (445)
Q Consensus 234 ~ai~~-~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iE----------- 301 (445)
+++|+ +| +++.|+++.+..++ .+.+++.++++++. +.++++++.|||
T Consensus 212 ~aIR~~vG--~d~~v~vri~~~~~------------------~~~g~~~~e~~~ia-~~Le~~gvd~iev~~g~~~~~~~ 270 (336)
T cd02932 212 DAVRAVWP--EDKPLFVRISATDW------------------VEGGWDLEDSVELA-KALKELGVDLIDVSSGGNSPAQK 270 (336)
T ss_pred HHHHHHcC--CCceEEEEEccccc------------------CCCCCCHHHHHHHH-HHHHHcCCCEEEECCCCCCcccc
Confidence 44443 45 57899999864321 14567888998874 567889999999
Q ss_pred CCC-CccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEe
Q 013317 302 DPF-DQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 302 dP~-~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
.|+ +..+.+..++|++.++ +||++.+. +++++++.++++.+.+|+|.+
T Consensus 271 ~~~~~~~~~~~~~~ir~~~~--iPVi~~G~-i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 271 IPVGPGYQVPFAERIRQEAG--IPVIAVGL-ITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred cCCCccccHHHHHHHHhhCC--CCEEEeCC-CCCHHHHHHHHHcCCCCeehh
Confidence 477 4556788899999998 99988887 567999999999999999864
No 51
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.83 E-value=0.00012 Score=73.53 Aligned_cols=95 Identities=13% Similarity=0.163 Sum_probs=70.6
Q ss_pred HHHHh-cCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEE-------CCCC
Q 013317 234 TAIAK-GGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIE-------DPFD 305 (445)
Q Consensus 234 ~ai~~-~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iE-------dP~~ 305 (445)
++||+ +| +++.|++++++.++. ..+||.++++++ .+.+++.++.||| +|..
T Consensus 207 ~aIR~avG--~d~~v~vris~~~~~------------------~~g~~~eea~~i-a~~Le~~Gvd~iev~~g~~~~~~~ 265 (338)
T cd04733 207 DAIRAAVG--PGFPVGIKLNSADFQ------------------RGGFTEEDALEV-VEALEEAGVDLVELSGGTYESPAM 265 (338)
T ss_pred HHHHHHcC--CCCeEEEEEcHHHcC------------------CCCCCHHHHHHH-HHHHHHcCCCEEEecCCCCCCccc
Confidence 44443 45 579999999753321 135788899887 4567889999999 5553
Q ss_pred c---c---------CHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEe
Q 013317 306 Q---D---------DWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 306 ~---~---------D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
. + .++..++|++.++ +||++++. +++++++.++++.+.+|+|.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~ik~~v~--iPVi~~G~-i~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 266 AGAKKESTIAREAYFLEFAEKIRKVTK--TPLMVTGG-FRTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred cccccCCccccchhhHHHHHHHHHHcC--CCEEEeCC-CCCHHHHHHHHHcCCCCeeee
Confidence 2 1 1355678999888 99988887 577999999999999999875
No 52
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.20 E-value=0.0026 Score=63.46 Aligned_cols=95 Identities=12% Similarity=0.230 Sum_probs=69.9
Q ss_pred HHHHh-cCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCeeEEE-------CCCC
Q 013317 234 TAIAK-GGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIVSIE-------DPFD 305 (445)
Q Consensus 234 ~ai~~-~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~~iE-------dP~~ 305 (445)
+++|+ +| +++.|+++.+..... +.+++.+++++++ +.++++++.||+ +|..
T Consensus 199 ~avr~~~g--~d~~i~vris~~~~~------------------~~g~~~~e~~~la-~~l~~~G~d~i~vs~g~~~~~~~ 257 (327)
T cd02803 199 AAVREAVG--PDFPVGVRLSADDFV------------------PGGLTLEEAIEIA-KALEEAGVDALHVSGGSYESPPP 257 (327)
T ss_pred HHHHHHcC--CCceEEEEechhccC------------------CCCCCHHHHHHHH-HHHHHcCCCEEEeCCCCCccccc
Confidence 34443 45 578899988643211 2346788888874 567889999994 6543
Q ss_pred ---------ccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEe
Q 013317 306 ---------QDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 306 ---------~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
..+++..+++++.++ +||++.+. +++++++.++++.+.+|+|.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~ir~~~~--iPVi~~Gg-i~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 258 IIPPPYVPEGYFLELAEKIKKAVK--IPVIAVGG-IRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred ccCCCCCCcchhHHHHHHHHHHCC--CCEEEeCC-CCCHHHHHHHHHCCCCCeeee
Confidence 446677888999887 99988876 467999999999999999875
No 53
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=97.18 E-value=0.00087 Score=67.79 Aligned_cols=72 Identities=7% Similarity=0.064 Sum_probs=55.2
Q ss_pred CCcChHHHHHHHHHhhhcCCee-------EEECCCCcc--------CHHHHHHHHHHhCCceEEEeccccccCHHHHHHH
Q 013317 277 QKVSGDGLKNVYRSFISDHPIV-------SIEDPFDQD--------DWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKA 341 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~-------~iEdP~~~~--------D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~ 341 (445)
.+++.++++++ .+.++++++. |.|+|.+.. ..+..+++++.++ +||++.+. ++++++++++
T Consensus 219 ~g~~~~e~~~i-~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~--iPVi~~G~-i~~~~~a~~~ 294 (353)
T cd02930 219 GGSTWEEVVAL-AKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVD--IPVIASNR-INTPEVAERL 294 (353)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCC--CCEEEcCC-CCCHHHHHHH
Confidence 45788899887 4567888743 457777543 2445678999988 99988877 4679999999
Q ss_pred HhcCCCCEEEe
Q 013317 342 IKEKTCNALLL 352 (445)
Q Consensus 342 i~~~a~d~v~i 352 (445)
++.+.+|+|++
T Consensus 295 i~~g~~D~V~~ 305 (353)
T cd02930 295 LADGDADMVSM 305 (353)
T ss_pred HHCCCCChhHh
Confidence 99999999874
No 54
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=96.79 E-value=0.0046 Score=58.39 Aligned_cols=67 Identities=9% Similarity=0.269 Sum_probs=54.8
Q ss_pred HHHHHHHHhhhcCCeeEE-------EC-CCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEec
Q 013317 283 GLKNVYRSFISDHPIVSI-------ED-PFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 283 ~~i~~~~~~~~~~~i~~i-------Ed-P~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
+++++ .+.+++.++.+| ++ +..+.+++..+++++..+ +||+++.. +++++++.++++.+.+|+|++=
T Consensus 139 ~~~~~-~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~--ipvi~~Gg-i~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 139 ETLEL-AKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVS--IPVIANGD-IFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred HHHHH-HHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCC--CeEEEeCC-CCCHHHHHHHHHhcCCCEEEEc
Confidence 56665 445778888888 66 776778999999999887 99988887 5779999999999889998863
No 55
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=93.11 E-value=0.37 Score=47.43 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=59.1
Q ss_pred cCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCC
Q 013317 307 DDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSG 384 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~ 384 (445)
++-+++.+++++++ +|+++|=.| ++.-+...++ ..+|.+.|.++.+|--.....+++.|+.+|+++-+|-++|
T Consensus 61 e~A~A~~~Ik~~~~--vPLVaDiHf--~~rla~~~~~-~g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~G 133 (361)
T COG0821 61 EAAEALKEIKQRLN--VPLVADIHF--DYRLALEAAE-CGVDKVRINPGNIGFKDRVREVVEAAKDKGIPIRIGVNAG 133 (361)
T ss_pred HHHHHHHHHHHhCC--CCEEEEeec--cHHHHHHhhh-cCcceEEECCcccCcHHHHHHHHHHHHHcCCCEEEecccC
Confidence 45678888899988 999999654 3444444444 4499999999999988889999999999999999988755
No 56
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=92.18 E-value=1.8 Score=43.58 Aligned_cols=71 Identities=10% Similarity=0.127 Sum_probs=48.7
Q ss_pred CcChHHHHHHHHHhhhcCC-eeEEEC-------C---------CC-c--cCHHHHHHHHHHhCCceEEEeccccccCHHH
Q 013317 278 KVSGDGLKNVYRSFISDHP-IVSIED-------P---------FD-Q--DDWEHYAELTGKIGRHVQIVGDDLLVTNPKR 337 (445)
Q Consensus 278 ~~t~~~~i~~~~~~~~~~~-i~~iEd-------P---------~~-~--~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~ 337 (445)
++|.++.+++ .+++++.+ +.||+= + .. . .+++..+++++.++ +||++--. ++++++
T Consensus 224 G~~~~e~~~~-~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~--ipvi~~G~-i~~~~~ 299 (343)
T cd04734 224 GLSPDEALEI-AARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVD--LPVFHAGR-IRDPAE 299 (343)
T ss_pred CCCHHHHHHH-HHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcC--CCEEeeCC-CCCHHH
Confidence 4678888887 45678776 677651 1 11 1 13455577788877 77744433 357999
Q ss_pred HHHHHhcCCCCEEEe
Q 013317 338 VEKAIKEKTCNALLL 352 (445)
Q Consensus 338 ~~~~i~~~a~d~v~i 352 (445)
+.++++.+.+|.|.+
T Consensus 300 ~~~~l~~~~~D~V~~ 314 (343)
T cd04734 300 AEQALAAGHADMVGM 314 (343)
T ss_pred HHHHHHcCCCCeeee
Confidence 999999999999875
No 57
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=91.88 E-value=0.52 Score=46.95 Aligned_cols=74 Identities=22% Similarity=0.241 Sum_probs=58.7
Q ss_pred cCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCcccc-HHHHHHHHHHHHHcCCcEEecCCCCC
Q 013317 307 DDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS-VTESIEAVKMAKRAGWGVMASHRSGE 385 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GG-it~a~~i~~~A~~~g~~~~~~~~~~e 385 (445)
++-+.+.+++++++ +|+++|=.+ ++.-+...+ ...+|.+.|.++.+|. -....++++.|+++|+++-+|-++|-
T Consensus 67 ~~a~al~~I~~~~~--iPlvADIHF--d~~lAl~a~-~~G~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~GS 141 (360)
T PRK00366 67 EAAAALPEIKKQLP--VPLVADIHF--DYRLALAAA-EAGADALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVNAGS 141 (360)
T ss_pred HHHHhHHHHHHcCC--CCEEEecCC--CHHHHHHHH-HhCCCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecCCcc
Confidence 34567788888887 999999653 444444444 3458999999999999 77899999999999999999987653
No 58
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=91.75 E-value=1.2 Score=41.25 Aligned_cols=108 Identities=15% Similarity=0.136 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHhhhcCCeeEEECCCCccC-HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccc
Q 013317 280 SGDGLKNVYRSFISDHPIVSIEDPFDQDD-WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 358 (445)
Q Consensus 280 t~~~~i~~~~~~~~~~~i~~iEdP~~~~D-~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~G 358 (445)
+.+++++.. +.+-+.++..||=++...+ ++..++|+++.+ ++.|-+.- +.++++++++++.++-=++.+-.+
T Consensus 18 ~~e~a~~~~-~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~-~~~vGAGT--Vl~~~~a~~a~~aGA~FivsP~~~--- 90 (204)
T TIGR01182 18 DVDDALPLA-KALIEGGLRVLEVTLRTPVALDAIRLLRKEVP-DALIGAGT--VLNPEQLRQAVDAGAQFIVSPGLT--- 90 (204)
T ss_pred CHHHHHHHH-HHHHHcCCCEEEEeCCCccHHHHHHHHHHHCC-CCEEEEEe--CCCHHHHHHHHHcCCCEEECCCCC---
Confidence 567888764 4566789999999997554 567889988875 47775553 457999999999887655555443
Q ss_pred cHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhcCCccc
Q 013317 359 SVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLATGQIK 404 (445)
Q Consensus 359 Git~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~ 404 (445)
.++++.|+++|++++.|++. -|+. .-|...++..+|
T Consensus 91 -----~~v~~~~~~~~i~~iPG~~T-ptEi----~~A~~~Ga~~vK 126 (204)
T TIGR01182 91 -----PELAKHAQDHGIPIIPGVAT-PSEI----MLALELGITALK 126 (204)
T ss_pred -----HHHHHHHHHcCCcEECCCCC-HHHH----HHHHHCCCCEEE
Confidence 37889999999998877642 2222 223444666666
No 59
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=91.17 E-value=0.56 Score=46.37 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCC
Q 013317 308 DWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGE 385 (445)
Q Consensus 308 D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~e 385 (445)
+-+.+.++++.++ +|+++|=.| . .. +.-..-...+|-+.|.+..+|.-....++++.|+++|+++-+|-++|-
T Consensus 60 ~A~al~~I~~~~~--iPlVADIHF-d-~~-lAl~a~~~g~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRIGVN~GS 132 (346)
T TIGR00612 60 SAAAFEAIKEGTN--VPLVADIHF-D-YR-LAALAMAKGVAKVRINPGNIGFRERVRDVVEKARDHGKAMRIGVNHGS 132 (346)
T ss_pred HHHhHHHHHhCCC--CCEEEeeCC-C-cH-HHHHHHHhccCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEEecCCCC
Confidence 3455666666777 999999653 2 22 222223567999999999999999999999999999999999987653
No 60
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=89.71 E-value=11 Score=35.17 Aligned_cols=117 Identities=13% Similarity=0.126 Sum_probs=79.0
Q ss_pred ChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCc---
Q 013317 280 SGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ--- 356 (445)
Q Consensus 280 t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k--- 356 (445)
+.+++++....+.+-++..+|+=|+..+=++..++|++. + +++.+--. .++..+...++.+ ++++.|-++|
T Consensus 62 ~~e~~i~~a~~l~~~~~~~~iKIP~T~~gl~ai~~L~~~-g--i~v~~T~V--~s~~Qa~~Aa~AG-A~yvsP~vgR~~~ 135 (211)
T cd00956 62 DAEGMVAEARKLASLGGNVVVKIPVTEDGLKAIKKLSEE-G--IKTNVTAI--FSAAQALLAAKAG-ATYVSPFVGRIDD 135 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCcHhHHHHHHHHHHc-C--CceeeEEe--cCHHHHHHHHHcC-CCEEEEecChHhh
Confidence 456777665554444577899999987556666666655 4 77755533 3588888888887 5889999988
Q ss_pred --cccHHHHHHHHHHHHHcCCc--EEecCCCCCChhHHHHHHHhhhcCCccccC
Q 013317 357 --IGSVTESIEAVKMAKRAGWG--VMASHRSGETEDTFIADLSVGLATGQIKTG 406 (445)
Q Consensus 357 --~GGit~a~~i~~~A~~~g~~--~~~~~~~~et~~~~~~~la~a~~~~~~~~G 406 (445)
.-|+.-..++.++++.+|++ ++.++- -+. .-+.+ +...|+..++.+
T Consensus 136 ~g~dg~~~i~~i~~~~~~~~~~tkil~As~--r~~-~ei~~-a~~~Gad~vTv~ 185 (211)
T cd00956 136 LGGDGMELIREIRTIFDNYGFDTKILAASI--RNP-QHVIE-AALAGADAITLP 185 (211)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCceEEeccc--CCH-HHHHH-HHHcCCCEEEeC
Confidence 36788889999999999866 333331 121 11222 344578888764
No 61
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=89.46 E-value=0.7 Score=46.08 Aligned_cols=71 Identities=23% Similarity=0.274 Sum_probs=52.2
Q ss_pred CHHHHHHHHHH-----hCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCcc--------cc-HHHHHHHHHHHHHc
Q 013317 308 DWEHYAELTGK-----IGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI--------GS-VTESIEAVKMAKRA 373 (445)
Q Consensus 308 D~~~~~~L~~~-----~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~--------GG-it~a~~i~~~A~~~ 373 (445)
+-+.+.+++++ ++ +|+++|=.+ ++.-....++. +|-+.|.++.+ |. -....++++.|+++
T Consensus 57 ~a~al~~I~~~l~~~g~~--iPlVADIHF--d~~lAl~a~~~--v~kiRINPGNi~~~~~~~~g~~~~~~~~vv~~ake~ 130 (359)
T PF04551_consen 57 AAEALKEIKKRLRALGSP--IPLVADIHF--DYRLALEAIEA--VDKIRINPGNIVDEFQEELGSIREKVKEVVEAAKER 130 (359)
T ss_dssp HHHHHHHHHHHHHCTT-S--S-EEEEEST--TCHHHHHHHHC---SEEEE-TTTSS----SS-SS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCC--CCeeeecCC--CHHHHHHHHHH--hCeEEECCCcccccccccccchHHHHHHHHHHHHHC
Confidence 34556666666 56 999999654 45666666665 99999999999 77 78889999999999
Q ss_pred CCcEEecCCCC
Q 013317 374 GWGVMASHRSG 384 (445)
Q Consensus 374 g~~~~~~~~~~ 384 (445)
|+++-+|-++|
T Consensus 131 ~ipIRIGvN~G 141 (359)
T PF04551_consen 131 GIPIRIGVNSG 141 (359)
T ss_dssp T-EEEEEEEGG
T ss_pred CCCEEEecccc
Confidence 99998888655
No 62
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.56 E-value=4.1 Score=41.36 Aligned_cols=72 Identities=10% Similarity=0.152 Sum_probs=45.9
Q ss_pred CcChHHHHHHHHHhhhcCCeeEEE-------CC-CCccCHHHHHHHHHHhCCceEEEecccc-----------------c
Q 013317 278 KVSGDGLKNVYRSFISDHPIVSIE-------DP-FDQDDWEHYAELTGKIGRHVQIVGDDLL-----------------V 332 (445)
Q Consensus 278 ~~t~~~~i~~~~~~~~~~~i~~iE-------dP-~~~~D~~~~~~L~~~~~~~~pI~gde~~-----------------~ 332 (445)
+.|.+++++++ +.+++.++.+|+ .| +...+..--+++++.++ +||++--.. .
T Consensus 231 g~~~~e~~~~~-~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~--~pv~~~G~i~~~~~~~~~~~~~~~~~~ 307 (361)
T cd04747 231 ADTPDELEALL-APLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTG--LPTITVGSVGLDGDFIGAFAGDEGASP 307 (361)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHHcC--CCEEEECCccccccccccccccccccc
Confidence 46788888764 456777766663 22 22223333456777777 776333221 2
Q ss_pred cCHHHHHHHHhcCCCCEEEe
Q 013317 333 TNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 333 ~~~~~~~~~i~~~a~d~v~i 352 (445)
+++++..++++.+.+|.|.+
T Consensus 308 ~~~~~a~~~l~~g~~D~V~~ 327 (361)
T cd04747 308 ASLDRLLERLERGEFDLVAV 327 (361)
T ss_pred CCHHHHHHHHHCCCCCeehh
Confidence 47899999999999999764
No 63
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=88.17 E-value=3.9 Score=41.18 Aligned_cols=94 Identities=13% Similarity=0.200 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccC-------------ccccHHHHHHHHHHHHHcCC
Q 013317 309 WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN-------------QIGSVTESIEAVKMAKRAGW 375 (445)
Q Consensus 309 ~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~-------------k~GGit~a~~i~~~A~~~g~ 375 (445)
.+..++|++..+ ++||++... + +.+.++.+++.+ +|+|.+=+. -..-+|...++++.|+.+++
T Consensus 137 ~~~ik~ik~~~~-~~~viaGNV-~-T~e~a~~L~~aG-ad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v 212 (352)
T PF00478_consen 137 IDMIKKIKKKFP-DVPVIAGNV-V-TYEGAKDLIDAG-ADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGV 212 (352)
T ss_dssp HHHHHHHHHHST-TSEEEEEEE---SHHHHHHHHHTT--SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHhCC-CceEEeccc-C-CHHHHHHHHHcC-CCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccC
Confidence 456778888876 699988875 4 589999999887 899887653 12468999999999999999
Q ss_pred cEEecCCCCCChhHHHHHHHhhhcCCccccCCCC
Q 013317 376 GVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 376 ~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
+++......-+.| +--|+++++.++..|.+.
T Consensus 213 ~iIADGGi~~sGD---i~KAla~GAd~VMlG~ll 243 (352)
T PF00478_consen 213 PIIADGGIRTSGD---IVKALAAGADAVMLGSLL 243 (352)
T ss_dssp EEEEESS-SSHHH---HHHHHHTT-SEEEESTTT
T ss_pred ceeecCCcCcccc---eeeeeeecccceeechhh
Confidence 9864443222222 334667789999999865
No 64
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=87.05 E-value=3.4 Score=41.80 Aligned_cols=71 Identities=7% Similarity=0.132 Sum_probs=44.8
Q ss_pred CcChHHHHHHHHHhhhcCCeeEEE-------CCC---CccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCC
Q 013317 278 KVSGDGLKNVYRSFISDHPIVSIE-------DPF---DQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTC 347 (445)
Q Consensus 278 ~~t~~~~i~~~~~~~~~~~i~~iE-------dP~---~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~ 347 (445)
+++.++.+++ .+.+++.++.||+ .+. +......++.+++....++||++--- +++++++.++++.+ +
T Consensus 231 g~~~ee~~~i-~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Gg-i~t~e~ae~~l~~g-a 307 (353)
T cd04735 231 GIRMEDTLAL-VDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGS-INTPDDALEALETG-A 307 (353)
T ss_pred CCCHHHHHHH-HHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECC-CCCHHHHHHHHHcC-C
Confidence 5678888877 4567888888875 111 11134455667776622377744332 45799999999884 7
Q ss_pred CEEE
Q 013317 348 NALL 351 (445)
Q Consensus 348 d~v~ 351 (445)
|.|.
T Consensus 308 D~V~ 311 (353)
T cd04735 308 DLVA 311 (353)
T ss_pred ChHH
Confidence 7754
No 65
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=86.85 E-value=9.5 Score=40.51 Aligned_cols=121 Identities=11% Similarity=0.086 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhhcCCeeEEECCCCccC----HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEecc---
Q 013317 282 DGLKNVYRSFISDHPIVSIEDPFDQDD----WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV--- 354 (445)
Q Consensus 282 ~~~i~~~~~~~~~~~i~~iEdP~~~~D----~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~--- 354 (445)
.+..+....+ -+.++..||=+..+.. .+..+++++..+.+++|.+... -++++++.+++.++ |++.+-.
T Consensus 241 ~~~~~ra~~L-v~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV--~t~e~a~~li~aGA-d~I~vg~g~G 316 (502)
T PRK07107 241 RDYAERVPAL-VEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNV--VDREGFRYLAEAGA-DFVKVGIGGG 316 (502)
T ss_pred hhHHHHHHHH-HHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccc--cCHHHHHHHHHcCC-CEEEECCCCC
Confidence 3455554554 4467777776676665 7889999998865588988875 35999999998776 8875521
Q ss_pred ----Cc----cc--cHHHHHHHHHHHH----HcC--CcEEecCCCCCChhHHHHHHHhhhcCCccccCCCC
Q 013317 355 ----NQ----IG--SVTESIEAVKMAK----RAG--WGVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 355 ----~k----~G--Git~a~~i~~~A~----~~g--~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
+| +| -+|...++++.++ ++| ++++.....--+.| +--|+|+|+..+..|.+.
T Consensus 317 s~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gd---i~KAla~GA~~vm~G~~~ 384 (502)
T PRK07107 317 SICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYH---MTLALAMGADFIMLGRYF 384 (502)
T ss_pred cCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhH---HHHHHHcCCCeeeeChhh
Confidence 12 22 3445555555443 347 77654442212211 223556678888888754
No 66
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=86.29 E-value=4.1 Score=40.91 Aligned_cols=71 Identities=6% Similarity=0.121 Sum_probs=48.3
Q ss_pred CcChHHHHHHHHHhhhcCCeeEEEC--------CC---CccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCC
Q 013317 278 KVSGDGLKNVYRSFISDHPIVSIED--------PF---DQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKT 346 (445)
Q Consensus 278 ~~t~~~~i~~~~~~~~~~~i~~iEd--------P~---~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a 346 (445)
+++.++.+++. +.+++.++.||+= |. +..+++-.+++++.++ +||++--. +++++++.++++.+.
T Consensus 223 G~~~~e~~~i~-~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~--ipVi~~G~-i~~~~~a~~~l~~g~ 298 (337)
T PRK13523 223 GLTVQDYVQYA-KWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHAN--IATGAVGL-ITSGAQAEEILQNNR 298 (337)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcC--CcEEEeCC-CCCHHHHHHHHHcCC
Confidence 56788888874 5577777776631 11 1123455577888877 88743333 467999999999999
Q ss_pred CCEEEe
Q 013317 347 CNALLL 352 (445)
Q Consensus 347 ~d~v~i 352 (445)
+|+|.+
T Consensus 299 ~D~V~~ 304 (337)
T PRK13523 299 ADLIFI 304 (337)
T ss_pred CChHHh
Confidence 998763
No 67
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=85.81 E-value=28 Score=33.55 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=83.3
Q ss_pred CCcChHHHHHHHHHhhhcCCeeEEEC--CC-CccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCC---CCEE
Q 013317 277 QKVSGDGLKNVYRSFISDHPIVSIED--PF-DQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKT---CNAL 350 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~~iEd--P~-~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a---~d~v 350 (445)
..++.++.++++ +.+++.++..||= |. .++|++..+.|++..+ ++.+.+= ...+..+++.+.+.+. ++.+
T Consensus 15 ~~~~~~~k~~i~-~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~-~~~~~~l--~r~~~~~v~~a~~~~~~~~~~~i 90 (268)
T cd07940 15 VSLTPEEKLEIA-RQLDELGVDVIEAGFPAASPGDFEAVKRIAREVL-NAEICGL--ARAVKKDIDAAAEALKPAKVDRI 90 (268)
T ss_pred CCCCHHHHHHHH-HHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCC-CCEEEEE--ccCCHhhHHHHHHhCCCCCCCEE
Confidence 357888888875 5578899999996 44 4677888888877543 2554321 1124788888877663 7777
Q ss_pred EeccCc-------------cccHHHHHHHHHHHHHcCCcEEecCCC-CCChhHHHH---HHHhhhcCCccccCCCC
Q 013317 351 LLKVNQ-------------IGSVTESIEAVKMAKRAGWGVMASHRS-GETEDTFIA---DLSVGLATGQIKTGAPC 409 (445)
Q Consensus 351 ~ik~~k-------------~GGit~a~~i~~~A~~~g~~~~~~~~~-~et~~~~~~---~la~a~~~~~~~~G~~~ 409 (445)
.+=.+- ---+-.+.++++.|++.|+.+.+++.. ..+.....+ .-+...++..+.+.+-.
T Consensus 91 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~ 166 (268)
T cd07940 91 HTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTV 166 (268)
T ss_pred EEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 764321 112456778899999999998887642 233444433 33455577777765544
No 68
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=85.55 E-value=26 Score=33.60 Aligned_cols=129 Identities=10% Similarity=0.083 Sum_probs=82.2
Q ss_pred CCcChHHHHHHHHHhhhcCCeeEEECCCC---ccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEec
Q 013317 277 QKVSGDGLKNVYRSFISDHPIVSIEDPFD---QDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~~iEdP~~---~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
..++.++.+++ .+.+++.++..||=-+| ++|++..++|.+... ++.+.+=- ..+.++++.+.+.+ ++.+.+-
T Consensus 15 ~~~~~~~k~~i-~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~-~~~~~~~~--r~~~~~v~~a~~~g-~~~i~i~ 89 (259)
T cd07939 15 VAFSREEKLAI-ARALDEAGVDEIEVGIPAMGEEEREAIRAIVALGL-PARLIVWC--RAVKEDIEAALRCG-VTAVHIS 89 (259)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcCC-CCEEEEec--cCCHHHHHHHHhCC-cCEEEEE
Confidence 45788898887 45688999999998554 345567777776432 24443321 13578888877654 6777764
Q ss_pred cCcc-------------ccHHHHHHHHHHHHHcCCcEEecCCCC-CChhHHHH---HHHhhhcCCccccCCCCC
Q 013317 354 VNQI-------------GSVTESIEAVKMAKRAGWGVMASHRSG-ETEDTFIA---DLSVGLATGQIKTGAPCR 410 (445)
Q Consensus 354 ~~k~-------------GGit~a~~i~~~A~~~g~~~~~~~~~~-et~~~~~~---~la~a~~~~~~~~G~~~~ 410 (445)
.+.. -.+..+++++++|++.|+.+.++.... .+...... ..+...++..+.+.+..+
T Consensus 90 ~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G 163 (259)
T cd07939 90 IPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVG 163 (259)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCC
Confidence 3221 225567789999999999988777422 23344433 444556777777655443
No 69
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=85.03 E-value=25 Score=32.06 Aligned_cols=116 Identities=18% Similarity=0.135 Sum_probs=69.8
Q ss_pred ChHHHHHHHHHhhhcCCeeEEEC--CCC-ccCHHHHHHHHHHhCCceEEEeccccccCHH--HHHHHHhcCCCCEEEecc
Q 013317 280 SGDGLKNVYRSFISDHPIVSIED--PFD-QDDWEHYAELTGKIGRHVQIVGDDLLVTNPK--RVEKAIKEKTCNALLLKV 354 (445)
Q Consensus 280 t~~~~i~~~~~~~~~~~i~~iEd--P~~-~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~--~~~~~i~~~a~d~v~ik~ 354 (445)
+.+++.+.+. .+.+. +.|||= |+. ..-.+..+.+++..+ ++||.++-- +.++. .++.+.+. .+|++.+..
T Consensus 11 ~~~~~~~~~~-~l~~~-i~~ieig~~~~~~~g~~~i~~i~~~~~-~~~i~~~~~-v~~~~~~~~~~~~~a-Gad~i~~h~ 85 (202)
T cd04726 11 DLEEALELAK-KVPDG-VDIIEAGTPLIKSEGMEAVRALREAFP-DKIIVADLK-TADAGALEAEMAFKA-GADIVTVLG 85 (202)
T ss_pred CHHHHHHHHH-Hhhhc-CCEEEcCCHHHHHhCHHHHHHHHHHCC-CCEEEEEEE-eccccHHHHHHHHhc-CCCEEEEEe
Confidence 5667777644 45666 999998 553 223577788887742 388877732 23332 33444444 477777665
Q ss_pred CccccHHHHHHHHHHHHHcCCcEEec-CCCCCChhHHHHHHHhhhcCCcccc
Q 013317 355 NQIGSVTESIEAVKMAKRAGWGVMAS-HRSGETEDTFIADLSVGLATGQIKT 405 (445)
Q Consensus 355 ~k~GGit~a~~i~~~A~~~g~~~~~~-~~~~et~~~~~~~la~a~~~~~~~~ 405 (445)
.- +.....++.+.|+.+|+++++. +. ..|...... +...++.+++.
T Consensus 86 ~~--~~~~~~~~i~~~~~~g~~~~v~~~~-~~t~~e~~~--~~~~~~d~v~~ 132 (202)
T cd04726 86 AA--PLSTIKKAVKAAKKYGKEVQVDLIG-VEDPEKRAK--LLKLGVDIVIL 132 (202)
T ss_pred eC--CHHHHHHHHHHHHHcCCeEEEEEeC-CCCHHHHHH--HHHCCCCEEEE
Confidence 43 2244677888999999998753 32 234333322 44556777665
No 70
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=84.96 E-value=39 Score=32.69 Aligned_cols=130 Identities=14% Similarity=0.121 Sum_probs=82.9
Q ss_pred CCCcChHHHHHHHHHhhhcCCeeEEECCCCcc------------CHHHHHHHHHHhCCceEE--EeccccccCHHHHHHH
Q 013317 276 SQKVSGDGLKNVYRSFISDHPIVSIEDPFDQD------------DWEHYAELTGKIGRHVQI--VGDDLLVTNPKRVEKA 341 (445)
Q Consensus 276 n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~------------D~~~~~~L~~~~~~~~pI--~gde~~~~~~~~~~~~ 341 (445)
|-.+|.++.++. .+.+++.++.+||=-++.. |.+.++++.+....+.++ +..-.. .+.+++...
T Consensus 14 ~~~f~~~~~~~i-a~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~a 91 (266)
T cd07944 14 NWDFGDEFVKAI-YRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGN-DDIDLLEPA 91 (266)
T ss_pred CccCCHHHHHHH-HHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCC-CCHHHHHHH
Confidence 345788888886 5568999999999876542 267788887764212444 433221 135666665
Q ss_pred HhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCC-CCChhHHHHH---HHhhhcCCccccCCCC
Q 013317 342 IKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRS-GETEDTFIAD---LSVGLATGQIKTGAPC 409 (445)
Q Consensus 342 i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~-~et~~~~~~~---la~a~~~~~~~~G~~~ 409 (445)
.+ ..++.+.+-... --+..+++++++|+++|+.+.++-+. ..+....... .+...++..+.+.+..
T Consensus 92 ~~-~gv~~iri~~~~-~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~ 161 (266)
T cd07944 92 SG-SVVDMIRVAFHK-HEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSF 161 (266)
T ss_pred hc-CCcCEEEEeccc-ccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 44 347887776543 36899999999999999988665421 2233444333 3455577777654433
No 71
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=84.50 E-value=12 Score=38.07 Aligned_cols=70 Identities=9% Similarity=0.055 Sum_probs=45.2
Q ss_pred CcChHH-HHHHHHHhhhcCCeeEEECCCC------ccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEE
Q 013317 278 KVSGDG-LKNVYRSFISDHPIVSIEDPFD------QDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNAL 350 (445)
Q Consensus 278 ~~t~~~-~i~~~~~~~~~~~i~~iEdP~~------~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v 350 (445)
+++.+| ++++ .+++++.++.+|+=-.. +-...-.+++++.++ +||++--. . +++...++++.+.+|+|
T Consensus 244 G~~~~e~~~~~-~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~--~pv~~~G~-~-~~~~ae~~i~~G~~D~V 318 (362)
T PRK10605 244 GPNEEADALYL-IEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFH--GVIIGAGA-Y-TAEKAETLIGKGLIDAV 318 (362)
T ss_pred CCCHHHHHHHH-HHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCC--CCEEEeCC-C-CHHHHHHHHHcCCCCEE
Confidence 467777 6776 45677777777642111 001223366777777 77744333 3 59999999999999998
Q ss_pred Ee
Q 013317 351 LL 352 (445)
Q Consensus 351 ~i 352 (445)
.+
T Consensus 319 ~~ 320 (362)
T PRK10605 319 AF 320 (362)
T ss_pred EE
Confidence 74
No 72
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=84.48 E-value=3.1 Score=41.26 Aligned_cols=68 Identities=13% Similarity=0.423 Sum_probs=45.4
Q ss_pred hHHHHHHHHHhhhcCCeeEE-------ECCCC-ccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEe
Q 013317 281 GDGLKNVYRSFISDHPIVSI-------EDPFD-QDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 281 ~~~~i~~~~~~~~~~~i~~i-------EdP~~-~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
.++.+++ .+.+++.++.+| +|... +-|++..+++++.++ +||++.-- +++++++.+.++.-.+|.|+|
T Consensus 137 ~~~~~~~-~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~--ipvi~NGd-I~s~~d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 137 PEETIEF-ARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALP--IPVIANGD-IFSPEDAERMLEQTGADGVMI 212 (309)
T ss_dssp CHHHHHH-HHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-T--SEEEEESS---SHHHHHHHCCCH-SSEEEE
T ss_pred hhHHHHH-HHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhccc--ceeEEcCc-cCCHHHHHHHHHhcCCcEEEE
Confidence 4566776 456788887776 23332 568999999999998 99876655 567999999988878999985
No 73
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=84.20 E-value=8.3 Score=36.08 Aligned_cols=110 Identities=16% Similarity=0.040 Sum_probs=76.2
Q ss_pred ChHHHHHHHHHhhhcCCeeEEECCCCccC-HHHHHHHHHHhCC--ceEEEeccccccCHHHHHHHHhcCCCCEEEeccCc
Q 013317 280 SGDGLKNVYRSFISDHPIVSIEDPFDQDD-WEHYAELTGKIGR--HVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 356 (445)
Q Consensus 280 t~~~~i~~~~~~~~~~~i~~iEdP~~~~D-~~~~~~L~~~~~~--~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k 356 (445)
+.+++++. .+.+-+.++..+|=+++..+ ++..++|+++.+. .+.|-+.- +.+++++++.++.++-=++.+-++
T Consensus 23 ~~~~a~~~-~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGT--V~~~~~~~~a~~aGA~FivsP~~~- 98 (213)
T PRK06552 23 SKEEALKI-SLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGT--VLDAVTARLAILAGAQFIVSPSFN- 98 (213)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeee--CCCHHHHHHHHHcCCCEEECCCCC-
Confidence 56777776 45566789999999997554 5678999888742 36664443 567999999999887655544333
Q ss_pred cccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhcCCcccc
Q 013317 357 IGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKT 405 (445)
Q Consensus 357 ~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~ 405 (445)
.++++.|+++|++++.|+.+ .++. .-|...++.++|+
T Consensus 99 -------~~v~~~~~~~~i~~iPG~~T-~~E~----~~A~~~Gad~vkl 135 (213)
T PRK06552 99 -------RETAKICNLYQIPYLPGCMT-VTEI----VTALEAGSEIVKL 135 (213)
T ss_pred -------HHHHHHHHHcCCCEECCcCC-HHHH----HHHHHcCCCEEEE
Confidence 35778899999998776642 2222 2234457788775
No 74
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=83.96 E-value=11 Score=37.43 Aligned_cols=69 Identities=9% Similarity=0.316 Sum_probs=48.3
Q ss_pred HHHHHHHHhhhcCCeeEE-------ECCCC--ccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEec
Q 013317 283 GLKNVYRSFISDHPIVSI-------EDPFD--QDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 283 ~~i~~~~~~~~~~~i~~i-------EdP~~--~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
+.+++ .+.+++.++.+| +|... +-|++..+++++.++ +||+|.-- +++++++.++++...+|.|+|=
T Consensus 149 ~~~~~-a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~--iPVi~nGd-I~t~~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 149 RKFEI-ADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLT--IPVIANGE-IWDWQSAQQCMAITGCDAVMIG 224 (312)
T ss_pred HHHHH-HHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcC--CcEEEeCC-cCCHHHHHHHHhccCCCEEEEc
Confidence 34554 455677765544 23222 127888999999987 88865554 5679999999999999999974
Q ss_pred cC
Q 013317 354 VN 355 (445)
Q Consensus 354 ~~ 355 (445)
=.
T Consensus 225 Rg 226 (312)
T PRK10550 225 RG 226 (312)
T ss_pred HH
Confidence 33
No 75
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=83.86 E-value=8.7 Score=38.31 Aligned_cols=69 Identities=12% Similarity=0.311 Sum_probs=48.5
Q ss_pred HHHHHHHHhhhcCCeeEE-------ECCC-CccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEecc
Q 013317 283 GLKNVYRSFISDHPIVSI-------EDPF-DQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 354 (445)
Q Consensus 283 ~~i~~~~~~~~~~~i~~i-------EdP~-~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~ 354 (445)
+.+++ .+.+++.++.+| ++.. ...|++..++++++++ +||+|.-- +.+++++.++++...+|+|++==
T Consensus 150 ~~~~~-a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~--iPVI~nGg-I~s~~da~~~l~~~gadgVmiGR 225 (321)
T PRK10415 150 NCVEI-AQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVS--IPVIANGD-ITDPLKARAVLDYTGADALMIGR 225 (321)
T ss_pred hHHHH-HHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcC--CcEEEeCC-CCCHHHHHHHHhccCCCEEEECh
Confidence 34444 345677776666 2332 2357888899999988 88855443 46799999999988899999754
Q ss_pred C
Q 013317 355 N 355 (445)
Q Consensus 355 ~ 355 (445)
.
T Consensus 226 ~ 226 (321)
T PRK10415 226 A 226 (321)
T ss_pred H
Confidence 3
No 76
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=83.22 E-value=37 Score=31.09 Aligned_cols=118 Identities=14% Similarity=0.040 Sum_probs=72.3
Q ss_pred ChHHHHHHHHHhhhcCCeeEEECC--CC-ccCHHHHHHHHHHhCCceEEEeccccccCHH--HHHHHHhcCCCCEEEecc
Q 013317 280 SGDGLKNVYRSFISDHPIVSIEDP--FD-QDDWEHYAELTGKIGRHVQIVGDDLLVTNPK--RVEKAIKEKTCNALLLKV 354 (445)
Q Consensus 280 t~~~~i~~~~~~~~~~~i~~iEdP--~~-~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~--~~~~~i~~~a~d~v~ik~ 354 (445)
+.+++++.. +.+ +.++.+||-+ +. +.-.+..+.|++..+ +..+..|=- +.++. .++++.+.+ +|++.+..
T Consensus 10 ~~~~a~~~~-~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~-~~~i~~d~k-~~d~~~~~~~~~~~~G-ad~i~vh~ 84 (206)
T TIGR03128 10 DIEEALELA-EKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFP-DRKVLADLK-TMDAGEYEAEQAFAAG-ADIVTVLG 84 (206)
T ss_pred CHHHHHHHH-HHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCC-CCEEEEEEe-eccchHHHHHHHHHcC-CCEEEEec
Confidence 466777764 456 5679999995 43 334677888888753 256666632 22344 466666555 78888776
Q ss_pred CccccHHHHHHHHHHHHHcCCcEEec-CCCCCChhHHHHHHHhhhcCCccccC
Q 013317 355 NQIGSVTESIEAVKMAKRAGWGVMAS-HRSGETEDTFIADLSVGLATGQIKTG 406 (445)
Q Consensus 355 ~k~GGit~a~~i~~~A~~~g~~~~~~-~~~~et~~~~~~~la~a~~~~~~~~G 406 (445)
.. +.....++.+.|+++|+++++. ++ ..+.... +..+...++.++++.
T Consensus 85 ~~--~~~~~~~~i~~~~~~g~~~~~~~~~-~~t~~~~-~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 85 VA--DDATIKGAVKAAKKHGKEVQVDLIN-VKDKVKR-AKELKELGADYIGVH 133 (206)
T ss_pred cC--CHHHHHHHHHHHHHcCCEEEEEecC-CCChHHH-HHHHHHcCCCEEEEc
Confidence 53 2234577888999999999877 43 3332222 222333467777753
No 77
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=83.11 E-value=18 Score=33.69 Aligned_cols=91 Identities=19% Similarity=0.161 Sum_probs=70.8
Q ss_pred ChHHHHHHHHHhhhcCCeeEEECCCCccC-HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccc
Q 013317 280 SGDGLKNVYRSFISDHPIVSIEDPFDQDD-WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 358 (445)
Q Consensus 280 t~~~~i~~~~~~~~~~~i~~iEdP~~~~D-~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~G 358 (445)
+.++++..... +-+-++..||=|++..+ .+..+.|++..+ ++-|-+.- +.++++++++++.++-=+|.+-++
T Consensus 23 ~~e~a~~~a~A-li~gGi~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGT--VL~~~q~~~a~~aGa~fiVsP~~~--- 95 (211)
T COG0800 23 DVEEALPLAKA-LIEGGIPAIEITLRTPAALEAIRALAKEFP-EALIGAGT--VLNPEQARQAIAAGAQFIVSPGLN--- 95 (211)
T ss_pred CHHHHHHHHHH-HHHcCCCeEEEecCCCCHHHHHHHHHHhCc-ccEEcccc--ccCHHHHHHHHHcCCCEEECCCCC---
Confidence 56788887544 55688999999998655 578899998887 57775554 357999999999988777766665
Q ss_pred cHHHHHHHHHHHHHcCCcEEecCC
Q 013317 359 SVTESIEAVKMAKRAGWGVMASHR 382 (445)
Q Consensus 359 Git~a~~i~~~A~~~g~~~~~~~~ 382 (445)
.++++.|..+|++++.|+.
T Consensus 96 -----~ev~~~a~~~~ip~~PG~~ 114 (211)
T COG0800 96 -----PEVAKAANRYGIPYIPGVA 114 (211)
T ss_pred -----HHHHHHHHhCCCcccCCCC
Confidence 3688899999999887774
No 78
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.78 E-value=7.1 Score=36.50 Aligned_cols=109 Identities=14% Similarity=0.109 Sum_probs=75.3
Q ss_pred ChHHHHHHHHHhhhcCCeeEEECCCCccC-HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccc
Q 013317 280 SGDGLKNVYRSFISDHPIVSIEDPFDQDD-WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 358 (445)
Q Consensus 280 t~~~~i~~~~~~~~~~~i~~iEdP~~~~D-~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~G 358 (445)
+.+++++.. +.+.+.++..||=++...+ ++..++|+++.+ ++.|-++- +.+.++++..++.++-=++.+-.
T Consensus 25 ~~~~a~~i~-~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p-~~~IGAGT--Vl~~~~a~~a~~aGA~FivsP~~---- 96 (212)
T PRK05718 25 KLEDAVPLA-KALVAGGLPVLEVTLRTPAALEAIRLIAKEVP-EALIGAGT--VLNPEQLAQAIEAGAQFIVSPGL---- 96 (212)
T ss_pred CHHHHHHHH-HHHHHcCCCEEEEecCCccHHHHHHHHHHHCC-CCEEEEee--ccCHHHHHHHHHcCCCEEECCCC----
Confidence 577888874 5567789999999987554 567788888876 46666664 46789999999888755554433
Q ss_pred cHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhcCCcccc
Q 013317 359 SVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKT 405 (445)
Q Consensus 359 Git~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~ 405 (445)
.+ ++++.|+++++.++.|++. -|+ +.-|...++..+|+
T Consensus 97 --~~--~vi~~a~~~~i~~iPG~~T-ptE----i~~a~~~Ga~~vKl 134 (212)
T PRK05718 97 --TP--PLLKAAQEGPIPLIPGVST-PSE----LMLGMELGLRTFKF 134 (212)
T ss_pred --CH--HHHHHHHHcCCCEeCCCCC-HHH----HHHHHHCCCCEEEE
Confidence 33 6777888899998766642 112 22244556777775
No 79
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=82.69 E-value=9.4 Score=38.86 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEe
Q 013317 310 EHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 310 ~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
+.-+++++.++ +||++--. ++++++..++++.+.+|+|.+
T Consensus 279 ~~~~~ik~~~~--~pvi~~G~-i~~~~~~~~~l~~g~~D~V~~ 318 (370)
T cd02929 279 PYIKFVKQVTS--KPVVGVGR-FTSPDKMVEVVKSGILDLIGA 318 (370)
T ss_pred HHHHHHHHHCC--CCEEEeCC-CCCHHHHHHHHHcCCCCeeee
Confidence 34467788777 88744322 467999999999999999875
No 80
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.40 E-value=8.9 Score=35.52 Aligned_cols=108 Identities=10% Similarity=0.051 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHhhhcCCeeEEECCCCccC-HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccc
Q 013317 280 SGDGLKNVYRSFISDHPIVSIEDPFDQDD-WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 358 (445)
Q Consensus 280 t~~~~i~~~~~~~~~~~i~~iEdP~~~~D-~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~G 358 (445)
+.+++++.. +.+-+.++..||=++...+ ++..++|+++.+ .+-|-+.- +.+++++++.++.++-=++.+-++
T Consensus 14 ~~~~a~~ia-~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~-~~~vGAGT--Vl~~e~a~~ai~aGA~FivSP~~~--- 86 (201)
T PRK06015 14 DVEHAVPLA-RALAAGGLPAIEITLRTPAALDAIRAVAAEVE-EAIVGAGT--ILNAKQFEDAAKAGSRFIVSPGTT--- 86 (201)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEeCCCccHHHHHHHHHHHCC-CCEEeeEe--CcCHHHHHHHHHcCCCEEECCCCC---
Confidence 567888764 4566788999999997544 567888888875 46664443 467999999999887666655544
Q ss_pred cHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhcCCccc
Q 013317 359 SVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLATGQIK 404 (445)
Q Consensus 359 Git~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~ 404 (445)
.++++.|+++|+.++.|.+. -|+.. -|...++..+|
T Consensus 87 -----~~vi~~a~~~~i~~iPG~~T-ptEi~----~A~~~Ga~~vK 122 (201)
T PRK06015 87 -----QELLAAANDSDVPLLPGAAT-PSEVM----ALREEGYTVLK 122 (201)
T ss_pred -----HHHHHHHHHcCCCEeCCCCC-HHHHH----HHHHCCCCEEE
Confidence 35788899999998877742 22222 23344566666
No 81
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=81.16 E-value=7.1 Score=41.51 Aligned_cols=73 Identities=12% Similarity=0.146 Sum_probs=55.1
Q ss_pred HHHHHHHHHHh---CCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCcccc----------------------HHHH
Q 013317 309 WEHYAELTGKI---GRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS----------------------VTES 363 (445)
Q Consensus 309 ~~~~~~L~~~~---~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GG----------------------it~a 363 (445)
-+.+..+++++ +.++|+++|=.+ ++.-....++. ++-+.|.++.+|. -...
T Consensus 72 A~al~~I~~~L~~~g~~iPLVADIHF--~~~~A~~a~~~--vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~ 147 (606)
T PRK00694 72 AQACEHIKERLIQQGISIPLVADIHF--FPQAAMHVADF--VDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKF 147 (606)
T ss_pred HHhHHHHHHHHhccCCCCCEEeecCC--ChHHHHHHHHh--cCceEECCcccCCccccccccccchhhhhhhhhhHHHHH
Confidence 34455555551 123999999654 46655566554 9999999999998 5688
Q ss_pred HHHHHHHHHcCCcEEecCCCCC
Q 013317 364 IEAVKMAKRAGWGVMASHRSGE 385 (445)
Q Consensus 364 ~~i~~~A~~~g~~~~~~~~~~e 385 (445)
..+++.|+++|+++-+|-+.|-
T Consensus 148 ~~vV~~ake~~~~IRIGvN~GS 169 (606)
T PRK00694 148 SPLVEKCKRLGKAMRIGVNHGS 169 (606)
T ss_pred HHHHHHHHHCCCCEEEecCCcC
Confidence 9999999999999999987653
No 82
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.69 E-value=9.2 Score=36.03 Aligned_cols=92 Identities=13% Similarity=-0.030 Sum_probs=66.2
Q ss_pred ChHHHHHHHHHhhhcCCeeEEECCCCc-cCHHHHHHHHHHhCC---ceEEEeccccccCHHHHHHHHhcCCCCEEEeccC
Q 013317 280 SGDGLKNVYRSFISDHPIVSIEDPFDQ-DDWEHYAELTGKIGR---HVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN 355 (445)
Q Consensus 280 t~~~~i~~~~~~~~~~~i~~iEdP~~~-~D~~~~~~L~~~~~~---~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~ 355 (445)
+.+++++.. +.+-+.++..||=++.. +-.+.+++|++.... ++.|-+. . +.|+++++..++.++-=++.+-.+
T Consensus 25 ~~~~a~~~~-~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaG-T-Vl~~e~a~~a~~aGA~FiVsP~~~ 101 (222)
T PRK07114 25 DVEVAKKVI-KACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVG-S-IVDAATAALYIQLGANFIVTPLFN 101 (222)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeE-e-CcCHHHHHHHHHcCCCEEECCCCC
Confidence 567888764 45667899999999964 456778888755432 2555334 2 567999999999887666655444
Q ss_pred ccccHHHHHHHHHHHHHcCCcEEecCC
Q 013317 356 QIGSVTESIEAVKMAKRAGWGVMASHR 382 (445)
Q Consensus 356 k~GGit~a~~i~~~A~~~g~~~~~~~~ 382 (445)
.+++++|+++|++++.|.+
T Consensus 102 --------~~v~~~~~~~~i~~iPG~~ 120 (222)
T PRK07114 102 --------PDIAKVCNRRKVPYSPGCG 120 (222)
T ss_pred --------HHHHHHHHHcCCCEeCCCC
Confidence 3578899999999877764
No 83
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=80.41 E-value=56 Score=33.16 Aligned_cols=126 Identities=16% Similarity=0.184 Sum_probs=82.0
Q ss_pred CCcChHHHHHHHHHhhhcCCeeEEEC--CCC-ccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEec
Q 013317 277 QKVSGDGLKNVYRSFISDHPIVSIED--PFD-QDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~~iEd--P~~-~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
..++.++.+++ .+.+++.++..||= |.. ++|++..+++.+... +..|++= ...++.+++.+++.+ ++.+.+-
T Consensus 17 ~~~s~~~k~~i-a~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~-~~~v~~~--~r~~~~di~~a~~~g-~~~i~i~ 91 (363)
T TIGR02090 17 VSLTVEQKVEI-ARKLDELGVDVIEAGFPIASEGEFEAIKKISQEGL-NAEICSL--ARALKKDIDKAIDCG-VDSIHTF 91 (363)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEeCCCCChHHHHHHHHHHhcCC-CcEEEEE--cccCHHHHHHHHHcC-cCEEEEE
Confidence 45788998887 55688999999997 433 466677777776543 3555432 123589999988775 5777762
Q ss_pred cC-------------ccccHHHHHHHHHHHHHcCCcEEecCC-CCCChhHHHHH---HHhhhcCCccccCC
Q 013317 354 VN-------------QIGSVTESIEAVKMAKRAGWGVMASHR-SGETEDTFIAD---LSVGLATGQIKTGA 407 (445)
Q Consensus 354 ~~-------------k~GGit~a~~i~~~A~~~g~~~~~~~~-~~et~~~~~~~---la~a~~~~~~~~G~ 407 (445)
++ +-.-+..+.+.+++|++.|+.+.++-. ...+....... .+...++..+.+.+
T Consensus 92 ~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~D 162 (363)
T TIGR02090 92 IATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIAD 162 (363)
T ss_pred EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 22 112356778899999999998876652 23344444444 35555777766444
No 84
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=79.71 E-value=49 Score=37.19 Aligned_cols=72 Identities=8% Similarity=0.043 Sum_probs=48.1
Q ss_pred CCcChHHHHHHHHHhhhcCCeeEEEC--------CCC----ccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhc
Q 013317 277 QKVSGDGLKNVYRSFISDHPIVSIED--------PFD----QDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKE 344 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~~iEd--------P~~----~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~ 344 (445)
.+++.++++++ .+.+++.++.||+= +.+ .-...-.+++++.++ +||++--. +++++++.++++.
T Consensus 633 ~g~~~~~~~~~-~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~--~pv~~~G~-i~~~~~a~~~l~~ 708 (765)
T PRK08255 633 GGNTPDDAVEI-ARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAG--IATIAVGA-ISEADHVNSIIAA 708 (765)
T ss_pred CCCCHHHHHHH-HHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcC--CEEEEeCC-CCCHHHHHHHHHc
Confidence 35788898876 45678777776641 110 011223366777777 88744333 4679999999999
Q ss_pred CCCCEEEe
Q 013317 345 KTCNALLL 352 (445)
Q Consensus 345 ~a~d~v~i 352 (445)
+.+|+|.+
T Consensus 709 g~~D~v~~ 716 (765)
T PRK08255 709 GRADLCAL 716 (765)
T ss_pred CCcceeeE
Confidence 99999886
No 85
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=79.03 E-value=17 Score=36.50 Aligned_cols=69 Identities=6% Similarity=0.065 Sum_probs=47.9
Q ss_pred cChHHHHHHHHHhhhcCCeeEEEC--CC-----CccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEE
Q 013317 279 VSGDGLKNVYRSFISDHPIVSIED--PF-----DQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALL 351 (445)
Q Consensus 279 ~t~~~~i~~~~~~~~~~~i~~iEd--P~-----~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ 351 (445)
.+.++.+++ .+++++.++.+|+= .. ..-.++..+++++.++ +||++--. ++ ++++.++++.+.+|.|.
T Consensus 238 ~~~ee~~~~-~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~--ipvi~~G~-i~-~~~a~~~l~~g~~D~V~ 312 (338)
T cd02933 238 DPEATFSYL-AKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFK--GPLIAAGG-YD-AESAEAALADGKADLVA 312 (338)
T ss_pred CCHHHHHHH-HHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcC--CCEEEECC-CC-HHHHHHHHHcCCCCEEE
Confidence 477888876 45677777666652 21 1234566778888887 88744433 35 89999999999999987
Q ss_pred e
Q 013317 352 L 352 (445)
Q Consensus 352 i 352 (445)
+
T Consensus 313 ~ 313 (338)
T cd02933 313 F 313 (338)
T ss_pred e
Confidence 5
No 86
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=78.11 E-value=23 Score=37.61 Aligned_cols=117 Identities=10% Similarity=0.159 Sum_probs=72.7
Q ss_pred HHHHHHhhhcCCeeEEE-CCC---CccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCc----
Q 013317 285 KNVYRSFISDHPIVSIE-DPF---DQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ---- 356 (445)
Q Consensus 285 i~~~~~~~~~~~i~~iE-dP~---~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k---- 356 (445)
++....+ -+.++..|+ |+- ...-++..++|++..+ .++|++... .++++++.+++.+ +|++.+-++-
T Consensus 243 ~~~~~~l-~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~-~~~v~aG~V--~t~~~a~~~~~aG-ad~I~vg~g~Gs~~ 317 (495)
T PTZ00314 243 IERAAAL-IEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYP-HVDIIAGNV--VTADQAKNLIDAG-ADGLRIGMGSGSIC 317 (495)
T ss_pred HHHHHHH-HHCCCCEEEEecCCCCchHHHHHHHHHHhhCC-CceEEECCc--CCHHHHHHHHHcC-CCEEEECCcCCccc
Confidence 4444444 446776666 442 2233567888888863 389877654 4689999998765 5677654321
Q ss_pred -------c--ccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhcCCccccCCCC
Q 013317 357 -------I--GSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 357 -------~--GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
+ ..++...++++.|+..|++++..... -+.-. +--|+++++..+..|.+.
T Consensus 318 ~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi-~~~~d--i~kAla~GA~~Vm~G~~~ 376 (495)
T PTZ00314 318 ITQEVCAVGRPQASAVYHVARYARERGVPCIADGGI-KNSGD--ICKALALGADCVMLGSLL 376 (495)
T ss_pred ccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCC-CCHHH--HHHHHHcCCCEEEECchh
Confidence 1 23566778889999999998653322 22222 223455678888877753
No 87
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=77.79 E-value=21 Score=36.26 Aligned_cols=72 Identities=6% Similarity=0.120 Sum_probs=46.0
Q ss_pred CCcChHHHHHHHHHhhhcCC-eeEEE------CCCCccCHH------H-HHHHHHHhCCceEEEeccccccCHHHHHHHH
Q 013317 277 QKVSGDGLKNVYRSFISDHP-IVSIE------DPFDQDDWE------H-YAELTGKIGRHVQIVGDDLLVTNPKRVEKAI 342 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~-i~~iE------dP~~~~D~~------~-~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i 342 (445)
.+++.++.+++ .+.+++.+ +.+|. +|.+.-... . -..++.... +|+++--. .++++.+.+.+
T Consensus 232 ~g~~~~e~~~l-a~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~--~pvi~~G~-i~~~~~Ae~~l 307 (363)
T COG1902 232 GGLTIEEAVEL-AKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVR--IPVIAVGG-INDPEQAEEIL 307 (363)
T ss_pred CCCCHHHHHHH-HHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcC--CCEEEeCC-CCCHHHHHHHH
Confidence 46788898876 55678777 45542 211111111 2 223556666 88766554 46799999999
Q ss_pred hcCCCCEEEe
Q 013317 343 KEKTCNALLL 352 (445)
Q Consensus 343 ~~~a~d~v~i 352 (445)
+.+.+|.|-+
T Consensus 308 ~~g~aDlVa~ 317 (363)
T COG1902 308 ASGRADLVAM 317 (363)
T ss_pred HcCCCCEEEe
Confidence 9999998864
No 88
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=77.32 E-value=23 Score=36.26 Aligned_cols=72 Identities=10% Similarity=0.107 Sum_probs=48.0
Q ss_pred CCcChHHHHHHHHHhhhcCCeeEEEC-------CC---C-----ccC-HHHHHHHHHHhCCceEEEeccccccCHHHHHH
Q 013317 277 QKVSGDGLKNVYRSFISDHPIVSIED-------PF---D-----QDD-WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEK 340 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~~iEd-------P~---~-----~~D-~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~ 340 (445)
.+++.++.++++ +.+++.++.||+= +. + +.. ..-.+++++.++ +||++--. +++++++.+
T Consensus 247 ~g~~~e~~~~~~-~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~--~pvi~~G~-i~~~~~~~~ 322 (382)
T cd02931 247 KGRDLEEGLKAA-KILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVD--VPVIMAGR-MEDPELASE 322 (382)
T ss_pred CCCCHHHHHHHH-HHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCC--CCEEEeCC-CCCHHHHHH
Confidence 467889988874 5677777666631 11 1 111 223366777777 78744433 467999999
Q ss_pred HHhcCCCCEEEe
Q 013317 341 AIKEKTCNALLL 352 (445)
Q Consensus 341 ~i~~~a~d~v~i 352 (445)
+++.+.+|.|.+
T Consensus 323 ~l~~g~~D~V~~ 334 (382)
T cd02931 323 AINEGIADMISL 334 (382)
T ss_pred HHHcCCCCeeee
Confidence 999999999875
No 89
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=77.30 E-value=10 Score=38.06 Aligned_cols=40 Identities=15% Similarity=0.376 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEe
Q 013317 310 EHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 310 ~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
...+.+++.++ +||++--. .++++...++++.+.+|+|.+
T Consensus 281 ~~a~~ik~~~~--~pvi~~G~-i~~~~~ae~~l~~g~~DlV~~ 320 (341)
T PF00724_consen 281 DLAEAIKKAVK--IPVIGVGG-IRTPEQAEKALEEGKADLVAM 320 (341)
T ss_dssp HHHHHHHHHHS--SEEEEESS-TTHHHHHHHHHHTTSTSEEEE
T ss_pred hhhhhhhhhcC--ceEEEEee-ecchhhhHHHHhcCCceEeec
Confidence 34567777777 88855544 466888999999999999875
No 90
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=76.64 E-value=74 Score=30.82 Aligned_cols=131 Identities=9% Similarity=0.047 Sum_probs=77.6
Q ss_pred CCCcChHHHHHHHHHhhhcCCeeEEEC--CC-CccCHHHHHHHHHHhCCceEEEecc----c--cccCHHHHHHHHhcCC
Q 013317 276 SQKVSGDGLKNVYRSFISDHPIVSIED--PF-DQDDWEHYAELTGKIGRHVQIVGDD----L--LVTNPKRVEKAIKEKT 346 (445)
Q Consensus 276 n~~~t~~~~i~~~~~~~~~~~i~~iEd--P~-~~~D~~~~~~L~~~~~~~~pI~gde----~--~~~~~~~~~~~i~~~a 346 (445)
+..++.++.++++ +.+.+.++..||= |. .+.|.+.+++|++....+..+++-- . ...+...++.+++. .
T Consensus 14 ~~~~s~e~k~~i~-~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~-g 91 (273)
T cd07941 14 GISFSVEDKLRIA-RKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALLEA-G 91 (273)
T ss_pred CCCCCHHHHHHHH-HHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHHhC-C
Confidence 3457888888875 5578899999997 44 6677777888876531124443211 0 01122345555544 4
Q ss_pred CCEEEeccCcc-------------ccHHHHHHHHHHHHHcCCcEEecCCC----CCChhHHHHHHH---hhhcCCccccC
Q 013317 347 CNALLLKVNQI-------------GSVTESIEAVKMAKRAGWGVMASHRS----GETEDTFIADLS---VGLATGQIKTG 406 (445)
Q Consensus 347 ~d~v~ik~~k~-------------GGit~a~~i~~~A~~~g~~~~~~~~~----~et~~~~~~~la---~a~~~~~~~~G 406 (445)
++.+.+-++-. --+..+++++++|+++|+.+.++.+. ..+.....++++ ...++..+.+.
T Consensus 92 ~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~ 171 (273)
T cd07941 92 TPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLVLC 171 (273)
T ss_pred CCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 56666643321 23456788999999999998765331 123444545544 55577777655
Q ss_pred CC
Q 013317 407 AP 408 (445)
Q Consensus 407 ~~ 408 (445)
+-
T Consensus 172 DT 173 (273)
T cd07941 172 DT 173 (273)
T ss_pred cC
Confidence 43
No 91
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=76.07 E-value=66 Score=30.47 Aligned_cols=126 Identities=18% Similarity=0.189 Sum_probs=80.8
Q ss_pred CCcChHHHHHHHHHhhhcCCeeEEECCCC---------ccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCC
Q 013317 277 QKVSGDGLKNVYRSFISDHPIVSIEDPFD---------QDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTC 347 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~~iEdP~~---------~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~ 347 (445)
..++.++.++++. .+.+.++.+||=-.+ .++++-.+++++... ++++.+-- .+...+++++.+.+ +
T Consensus 14 ~~~s~e~~~~i~~-~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~-~~~~~~l~--~~~~~~i~~a~~~g-~ 88 (265)
T cd03174 14 ATFSTEDKLEIAE-ALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVP-NVKLQALV--RNREKGIERALEAG-V 88 (265)
T ss_pred CCCCHHHHHHHHH-HHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccC-CcEEEEEc--cCchhhHHHHHhCC-c
Confidence 3467888888754 567778777774432 456677788887762 25654321 12267777777765 6
Q ss_pred CEEEeccCcc-------------ccHHHHHHHHHHHHHcCCcEEecCC-CCC--Chh---HHHHHHHhhhcCCccccCC
Q 013317 348 NALLLKVNQI-------------GSVTESIEAVKMAKRAGWGVMASHR-SGE--TED---TFIADLSVGLATGQIKTGA 407 (445)
Q Consensus 348 d~v~ik~~k~-------------GGit~a~~i~~~A~~~g~~~~~~~~-~~e--t~~---~~~~~la~a~~~~~~~~G~ 407 (445)
+.+.+-..-. +-+..+++.++.|++.|+.+.+.-. ... ... ...+..+...++..+.+-+
T Consensus 89 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~D 167 (265)
T cd03174 89 DEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKD 167 (265)
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEech
Confidence 7777665433 3478889999999999999866552 122 322 3355666677777776544
No 92
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=75.39 E-value=16 Score=33.75 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=70.8
Q ss_pred ChHHHHHHHHHhhhcCCeeEEECCCCccC-HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccc
Q 013317 280 SGDGLKNVYRSFISDHPIVSIEDPFDQDD-WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 358 (445)
Q Consensus 280 t~~~~i~~~~~~~~~~~i~~iEdP~~~~D-~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~G 358 (445)
+.+++.+... .+-+-++..||=+++..+ ++..++++++.+ .+-|-+.- +.+.++++++++.++-=++.+-.+
T Consensus 18 ~~~~a~~~~~-al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p-~~~vGAGT--V~~~e~a~~a~~aGA~FivSP~~~--- 90 (196)
T PF01081_consen 18 DPEDAVPIAE-ALIEGGIRAIEITLRTPNALEAIEALRKEFP-DLLVGAGT--VLTAEQAEAAIAAGAQFIVSPGFD--- 90 (196)
T ss_dssp SGGGHHHHHH-HHHHTT--EEEEETTSTTHHHHHHHHHHHHT-TSEEEEES----SHHHHHHHHHHT-SEEEESS-----
T ss_pred CHHHHHHHHH-HHHHCCCCEEEEecCCccHHHHHHHHHHHCC-CCeeEEEe--ccCHHHHHHHHHcCCCEEECCCCC---
Confidence 4567777644 456688999999997655 567777888886 46664443 467999999999998777766544
Q ss_pred cHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhcCCccc
Q 013317 359 SVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLATGQIK 404 (445)
Q Consensus 359 Git~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~ 404 (445)
.+++++|+++|+.++.|.+. -|+. .-|...++..+|
T Consensus 91 -----~~v~~~~~~~~i~~iPG~~T-ptEi----~~A~~~G~~~vK 126 (196)
T PF01081_consen 91 -----PEVIEYAREYGIPYIPGVMT-PTEI----MQALEAGADIVK 126 (196)
T ss_dssp -----HHHHHHHHHHTSEEEEEESS-HHHH----HHHHHTT-SEEE
T ss_pred -----HHHHHHHHHcCCcccCCcCC-HHHH----HHHHHCCCCEEE
Confidence 46888999999998877742 2222 223445666666
No 93
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=75.14 E-value=14 Score=36.02 Aligned_cols=43 Identities=14% Similarity=0.218 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEec
Q 013317 309 WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 309 ~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
++..+++++.++.++||++.-- +++.+++.+++..+ +|.|++-
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GG-I~~~~da~~~l~~G-Ad~V~vg 272 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGG-IDSGEDVLEMLMAG-ASAVQVA 272 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECC-CCCHHHHHHHHHcC-ccHheEc
Confidence 4456777777722388855444 46789999998877 7777753
No 94
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=75.04 E-value=29 Score=33.52 Aligned_cols=93 Identities=20% Similarity=0.217 Sum_probs=64.1
Q ss_pred HHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHH
Q 013317 282 DGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVT 361 (445)
Q Consensus 282 ~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit 361 (445)
++-++.+.+..+++++.|+=+|+..++.+...++. + -..|.+-+ +++..=++.+. +.--.|++|-+..+++.
T Consensus 75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~~---d-~lkI~s~~--~~n~~LL~~~a--~~gkPVilk~G~~~t~~ 146 (260)
T TIGR01361 75 EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEYA---D-ILQIGARN--MQNFELLKEVG--KQGKPVLLKRGMGNTIE 146 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhhC---C-EEEECccc--ccCHHHHHHHh--cCCCcEEEeCCCCCCHH
Confidence 44555667778899999999999988877776652 2 13443443 34544344442 33558889999888999
Q ss_pred HHHHHHHHHHHcCC-cEEecCC
Q 013317 362 ESIEAVKMAKRAGW-GVMASHR 382 (445)
Q Consensus 362 ~a~~i~~~A~~~g~-~~~~~~~ 382 (445)
++..+++..+..|- .+++-|+
T Consensus 147 e~~~Ave~i~~~Gn~~i~l~~r 168 (260)
T TIGR01361 147 EWLYAAEYILSSGNGNVILCER 168 (260)
T ss_pred HHHHHHHHHHHcCCCcEEEEEC
Confidence 99999998888776 4666553
No 95
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=74.02 E-value=31 Score=33.21 Aligned_cols=100 Identities=18% Similarity=0.285 Sum_probs=70.2
Q ss_pred eeEE-ECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCC
Q 013317 297 IVSI-EDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGW 375 (445)
Q Consensus 297 i~~i-EdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~ 375 (445)
+..+ |.-+-..+++.++.+++.++ +||...+. ++.+.++....+. .+|++.+...-. ......++.+.|+..|+
T Consensus 87 isvlte~~~f~g~~~~l~~v~~~v~--iPvl~kdf-i~~~~qi~~a~~~-GAD~VlLi~~~l-~~~~l~~li~~a~~lGl 161 (260)
T PRK00278 87 LSVLTDERFFQGSLEYLRAARAAVS--LPVLRKDF-IIDPYQIYEARAA-GADAILLIVAAL-DDEQLKELLDYAHSLGL 161 (260)
T ss_pred EEEecccccCCCCHHHHHHHHHhcC--CCEEeeee-cCCHHHHHHHHHc-CCCEEEEEeccC-CHHHHHHHHHHHHHcCC
Confidence 4433 55566788999999999988 99987775 5667877666544 578888887765 34788889999999999
Q ss_pred cEEecCCCCCChhHHHHHHHhhhcCCccccC
Q 013317 376 GVMASHRSGETEDTFIADLSVGLATGQIKTG 406 (445)
Q Consensus 376 ~~~~~~~~~et~~~~~~~la~a~~~~~~~~G 406 (445)
.+++-....+ + +.-|..+++.++-.+
T Consensus 162 ~~lvevh~~~-E----~~~A~~~gadiIgin 187 (260)
T PRK00278 162 DVLVEVHDEE-E----LERALKLGAPLIGIN 187 (260)
T ss_pred eEEEEeCCHH-H----HHHHHHcCCCEEEEC
Confidence 9876653222 1 233445566666554
No 96
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=73.51 E-value=10 Score=40.63 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=54.0
Q ss_pred HHHHHHHHHHh---CCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccH----------------------HHH
Q 013317 309 WEHYAELTGKI---GRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV----------------------TES 363 (445)
Q Consensus 309 ~~~~~~L~~~~---~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGi----------------------t~a 363 (445)
-+.+..+++++ +.++|+++|=.+ ++.-....++. +|-+.|.++.+|.- ...
T Consensus 68 a~~l~~I~~~l~~~G~~iPLVADIHF--~~~~A~~a~~~--v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~ 143 (611)
T PRK02048 68 AENLMNINIGLRSQGYMVPLVADVHF--NPKVADVAAQY--AEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRF 143 (611)
T ss_pred HHhHHHHHHHHhhcCCCCCEEEecCC--CcHHHHHHHHh--hCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHH
Confidence 34555566654 123999999654 45555555554 99999999999883 567
Q ss_pred HHHHHHHHHcCCcEEecCCCCC
Q 013317 364 IEAVKMAKRAGWGVMASHRSGE 385 (445)
Q Consensus 364 ~~i~~~A~~~g~~~~~~~~~~e 385 (445)
..+++.|+++|+++-+|-+.|-
T Consensus 144 ~~~v~~ak~~~~~iRIGvN~GS 165 (611)
T PRK02048 144 VPFLNICKENHTAIRIGVNHGS 165 (611)
T ss_pred HHHHHHHHHCCCCEEEecCCcC
Confidence 7899999999999999987553
No 97
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=73.44 E-value=17 Score=37.10 Aligned_cols=96 Identities=17% Similarity=0.226 Sum_probs=66.6
Q ss_pred ccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEecc-----------Cccc--cHHHHHHHHHHHHH
Q 013317 306 QDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV-----------NQIG--SVTESIEAVKMAKR 372 (445)
Q Consensus 306 ~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~-----------~k~G--Git~a~~i~~~A~~ 372 (445)
.-.++..+.++++.+ ..+|+|... +| .+..+.+|..+ +|++.+-. +-|| =-|...+++.+|++
T Consensus 277 ~~qiemik~iK~~yP-~l~ViaGNV-VT-~~qa~nLI~aG-aDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q 352 (503)
T KOG2550|consen 277 IYQLEMIKYIKETYP-DLQIIAGNV-VT-KEQAANLIAAG-ADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQ 352 (503)
T ss_pred hhHHHHHHHHHhhCC-Cceeeccce-ee-HHHHHHHHHcc-CceeEeccccCceeeeceeeeccCCcccchhhHHHHHHh
Confidence 345677888888886 488888876 55 78899998765 57766543 2232 25889999999999
Q ss_pred cCCcEEecCCCCCChhHHHHHHHhhhcCCccccCCC
Q 013317 373 AGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAP 408 (445)
Q Consensus 373 ~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~ 408 (445)
+|++|+... +-.+...++ =|+++++.++..|++
T Consensus 353 ~gvpviADG--Giq~~Ghi~-KAl~lGAstVMmG~l 385 (503)
T KOG2550|consen 353 FGVPCIADG--GIQNVGHVV-KALGLGASTVMMGGL 385 (503)
T ss_pred cCCceeecC--CcCccchhH-hhhhcCchhheecce
Confidence 999986444 333333333 356667778777773
No 98
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=73.29 E-value=30 Score=34.66 Aligned_cols=94 Identities=14% Similarity=0.140 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccC-------c------cccHHHHHHHHHHHHHcCC
Q 013317 309 WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN-------Q------IGSVTESIEAVKMAKRAGW 375 (445)
Q Consensus 309 ~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~-------k------~GGit~a~~i~~~A~~~g~ 375 (445)
++..++++++.+ +++|++... + +++.++.+++.+ +|++.+=+. | .+=+|...+.++.|+..|+
T Consensus 139 i~~ik~ik~~~P-~~~vIaGNV-~-T~e~a~~Li~aG-AD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gv 214 (346)
T PRK05096 139 VQFVAKAREAWP-DKTICAGNV-V-TGEMVEELILSG-ADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGG 214 (346)
T ss_pred HHHHHHHHHhCC-CCcEEEecc-c-CHHHHHHHHHcC-CCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCC
Confidence 445677777774 378888875 3 488888888764 577653332 2 2468899999999999999
Q ss_pred cEEecCCCCCChhHHHHHHHhhhcCCccccCCCC
Q 013317 376 GVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 376 ~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
+++.....-.++| +--|++.++.++..|++.
T Consensus 215 piIADGGi~~sGD---I~KAlaaGAd~VMlGsll 245 (346)
T PRK05096 215 QIVSDGGCTVPGD---VAKAFGGGADFVMLGGML 245 (346)
T ss_pred CEEecCCcccccH---HHHHHHcCCCEEEeChhh
Confidence 9764443222322 223556678898888854
No 99
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=72.29 E-value=33 Score=33.61 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccC
Q 013317 308 DWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN 355 (445)
Q Consensus 308 D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~ 355 (445)
.++..+++++.++ +||++.-- +++++++.+++..+ +|.|++=-.
T Consensus 222 ~l~~v~~i~~~~~--ipvi~~GG-I~~~~da~~~l~aG-Ad~V~igr~ 265 (301)
T PRK07259 222 ALRMVYQVYQAVD--IPIIGMGG-ISSAEDAIEFIMAG-ASAVQVGTA 265 (301)
T ss_pred cHHHHHHHHHhCC--CCEEEECC-CCCHHHHHHHHHcC-CCceeEcHH
Confidence 4667778888877 89866654 57799999999887 699887543
No 100
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=71.78 E-value=59 Score=32.54 Aligned_cols=69 Identities=6% Similarity=0.076 Sum_probs=45.4
Q ss_pred hHHHHHHHHHhhhcCCeeEEE--------CC--------CCccCHHHHHHHHHHh-CCceEEEeccccccCHHHHHHHHh
Q 013317 281 GDGLKNVYRSFISDHPIVSIE--------DP--------FDQDDWEHYAELTGKI-GRHVQIVGDDLLVTNPKRVEKAIK 343 (445)
Q Consensus 281 ~~~~i~~~~~~~~~~~i~~iE--------dP--------~~~~D~~~~~~L~~~~-~~~~pI~gde~~~~~~~~~~~~i~ 343 (445)
.++++++. +.+++.++.+|. |- +++-+++...++++.+ + +||++.-- +++++++.++++
T Consensus 150 ~~~~~~~~-~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~--iPVI~nGg-I~s~eda~~~l~ 225 (333)
T PRK11815 150 YEFLCDFV-DTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPH--LTIEINGG-IKTLEEAKEHLQ 225 (333)
T ss_pred HHHHHHHH-HHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCC--CeEEEECC-cCCHHHHHHHHh
Confidence 44566654 456666666553 11 2335788888998875 5 88855433 467999999987
Q ss_pred cCCCCEEEeccC
Q 013317 344 EKTCNALLLKVN 355 (445)
Q Consensus 344 ~~a~d~v~ik~~ 355 (445)
. +|+|++==.
T Consensus 226 ~--aDgVmIGRa 235 (333)
T PRK11815 226 H--VDGVMIGRA 235 (333)
T ss_pred c--CCEEEEcHH
Confidence 3 898886443
No 101
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=71.33 E-value=47 Score=33.37 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=64.4
Q ss_pred HHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHH
Q 013317 282 DGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVT 361 (445)
Q Consensus 282 ~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit 361 (445)
++-++.+.+..+++++.++-+|+++++.+...++. + -+.|.+-+ ++|..=++.+-. .---|++|-+..+++.
T Consensus 143 ~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~v---d-~lqIgAr~--~~N~~LL~~va~--~~kPViLk~G~~~ti~ 214 (335)
T PRK08673 143 EEGLKLLAEAREETGLPIVTEVMDPRDVELVAEYV---D-ILQIGARN--MQNFDLLKEVGK--TNKPVLLKRGMSATIE 214 (335)
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhC---C-eEEECccc--ccCHHHHHHHHc--CCCcEEEeCCCCCCHH
Confidence 34455667777889999999999988877776652 2 13443443 355454444433 3447888988888999
Q ss_pred HHHHHHHHHHHcCC-cEEecCC
Q 013317 362 ESIEAVKMAKRAGW-GVMASHR 382 (445)
Q Consensus 362 ~a~~i~~~A~~~g~-~~~~~~~ 382 (445)
+++.++++..+.|- .+++-|+
T Consensus 215 E~l~A~e~i~~~GN~~viL~er 236 (335)
T PRK08673 215 EWLMAAEYILAEGNPNVILCER 236 (335)
T ss_pred HHHHHHHHHHHcCCCeEEEEEC
Confidence 99999998887765 5666664
No 102
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=71.24 E-value=28 Score=32.34 Aligned_cols=68 Identities=12% Similarity=0.064 Sum_probs=49.6
Q ss_pred cChHHHHHHHHHhhhcCC--eeEEEC---CCCccCHHHHHHHHHHhCCceEE-EeccccccCHHHHHHHHhcCCCCEEEe
Q 013317 279 VSGDGLKNVYRSFISDHP--IVSIED---PFDQDDWEHYAELTGKIGRHVQI-VGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 279 ~t~~~~i~~~~~~~~~~~--i~~iEd---P~~~~D~~~~~~L~~~~~~~~pI-~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
.+++++..+ +...+.++ +.++|+ ...+-+.+-.+++++.++ +|+ +|.- ++++++++++++.+ +|.+.+
T Consensus 131 ~~~e~~~~~-a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~--~Pv~vGGG--Irs~e~a~~l~~~G-AD~VVV 204 (205)
T TIGR01769 131 NKPEIAAAY-CLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKASG--IPLIVGGG--IRSPEIAYEIVLAG-ADAIVT 204 (205)
T ss_pred CCHHHHHHH-HHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhC--CCEEEeCC--CCCHHHHHHHHHcC-CCEEEe
Confidence 466776665 55566555 778898 445567888999999987 776 6665 46799999988777 677654
No 103
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=70.81 E-value=37 Score=34.30 Aligned_cols=97 Identities=20% Similarity=0.193 Sum_probs=68.0
Q ss_pred CCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCc
Q 013317 277 QKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 356 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k 356 (445)
+++- ++-++.+.+..+++++.++=+|+..++.+-..++ .+ -+.|-+-+ ++|..=++.+-+ .--.|++|-+.
T Consensus 147 ~G~g-~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~---~d-~lqIga~~--~~n~~LL~~va~--t~kPVllk~G~ 217 (352)
T PRK13396 147 QGHG-ESALELLAAAREATGLGIITEVMDAADLEKIAEV---AD-VIQVGARN--MQNFSLLKKVGA--QDKPVLLKRGM 217 (352)
T ss_pred CCch-HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhh---CC-eEEECccc--ccCHHHHHHHHc--cCCeEEEeCCC
Confidence 3444 5667777777789999999999998887777765 33 13443443 345443444433 34588999999
Q ss_pred cccHHHHHHHHHHHHHcCC-cEEecCC
Q 013317 357 IGSVTESIEAVKMAKRAGW-GVMASHR 382 (445)
Q Consensus 357 ~GGit~a~~i~~~A~~~g~-~~~~~~~ 382 (445)
.+++.+++.++++..+.|- ++++-|+
T Consensus 218 ~~t~ee~~~A~e~i~~~Gn~~viL~er 244 (352)
T PRK13396 218 AATIDEWLMAAEYILAAGNPNVILCER 244 (352)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEec
Confidence 9999999999999988775 4666665
No 104
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=70.57 E-value=34 Score=31.14 Aligned_cols=109 Identities=18% Similarity=0.203 Sum_probs=71.5
Q ss_pred ChHHHHHHHHHhhhcCCeeEEECCCCcc-CHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccc
Q 013317 280 SGDGLKNVYRSFISDHPIVSIEDPFDQD-DWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 358 (445)
Q Consensus 280 t~~~~i~~~~~~~~~~~i~~iEdP~~~~-D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~G 358 (445)
+++++.++.. .+.+.++.+||=.+... ..+..+++++..+ .+.|.+... .+.+++..+++.++ |++. .+
T Consensus 14 ~~~~~~~~~~-~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~-~~~iGag~v--~~~~~~~~a~~~Ga-~~i~-----~p 83 (190)
T cd00452 14 DAEDALALAE-ALIEGGIRAIEITLRTPGALEAIRALRKEFP-EALIGAGTV--LTPEQADAAIAAGA-QFIV-----SP 83 (190)
T ss_pred CHHHHHHHHH-HHHHCCCCEEEEeCCChhHHHHHHHHHHHCC-CCEEEEEeC--CCHHHHHHHHHcCC-CEEE-----cC
Confidence 5677777644 45568899999887643 4567788888875 366655543 45899988888776 4443 12
Q ss_pred cHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhcCCcccc
Q 013317 359 SVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKT 405 (445)
Q Consensus 359 Git~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~ 405 (445)
+.. ..+.+.++.++++++++..+. ++ +.-|...++.++++
T Consensus 84 ~~~--~~~~~~~~~~~~~~i~gv~t~-~e----~~~A~~~Gad~i~~ 123 (190)
T cd00452 84 GLD--PEVVKAANRAGIPLLPGVATP-TE----IMQALELGADIVKL 123 (190)
T ss_pred CCC--HHHHHHHHHcCCcEECCcCCH-HH----HHHHHHCCCCEEEE
Confidence 211 467778888999988877521 11 23344567888876
No 105
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=70.12 E-value=55 Score=31.10 Aligned_cols=119 Identities=13% Similarity=0.223 Sum_probs=80.9
Q ss_pred CCCCccCHHHHHHHHHHhCCceEEEecccc-------ccCH-HHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHc
Q 013317 302 DPFDQDDWEHYAELTGKIGRHVQIVGDDLL-------VTNP-KRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRA 373 (445)
Q Consensus 302 dP~~~~D~~~~~~L~~~~~~~~pI~gde~~-------~~~~-~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~ 373 (445)
|-+-..+-....+++.+++.++.|.+|=.. -.+. +-++..++.+.+|++.+-=.+.|+-.+.-++...++..
T Consensus 125 qGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~TG~~~d~~el~~a~~~~ 204 (263)
T COG0434 125 QGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGSRTGSPPDLEELKLAKEAV 204 (263)
T ss_pred cceecchHHHHHHHHHhccCCcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEecccCCCCCCHHHHHHHHhcc
Confidence 333333444566666666655666666421 0122 34456689999999999999999999999888888888
Q ss_pred CCcEEecCCCCCChhHHHHHHHhhh-cCCccccCC----CCCchhHHHHHHH
Q 013317 374 GWGVMASHRSGETEDTFIADLSVGL-ATGQIKTGA----PCRSERLAKYNQL 420 (445)
Q Consensus 374 g~~~~~~~~~~et~~~~~~~la~a~-~~~~~~~G~----~~~~er~~k~n~l 420 (445)
.+++.+|+....-+...+.++|=|+ -...+|-|+ +-+.+|..++=++
T Consensus 205 ~~pvlvGSGv~~eN~~~~l~~adG~IvgT~lK~~G~~~n~VD~~Rv~~~v~~ 256 (263)
T COG0434 205 DTPVLVGSGVNPENIEELLKIADGVIVGTSLKKGGVTWNPVDLERVRRFVEA 256 (263)
T ss_pred CCCEEEecCCCHHHHHHHHHHcCceEEEEEEccCCEecCccCHHHHHHHHHH
Confidence 9999999865444556666766555 236678777 6677777655443
No 106
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=70.08 E-value=1e+02 Score=30.09 Aligned_cols=127 Identities=13% Similarity=0.176 Sum_probs=76.7
Q ss_pred CCcChHHHHHHHHHhhhcCCeeEEEC--C-CCccCHHHHHHHHHHhCC-----ceEEEeccccccCHHHHHHHHhcCCCC
Q 013317 277 QKVSGDGLKNVYRSFISDHPIVSIED--P-FDQDDWEHYAELTGKIGR-----HVQIVGDDLLVTNPKRVEKAIKEKTCN 348 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~~iEd--P-~~~~D~~~~~~L~~~~~~-----~~pI~gde~~~~~~~~~~~~i~~~a~d 348 (445)
..++.++-++++..+++..++..||= | +.++|++...++...... ++.+++ + +.+..++..+.+.+ ++
T Consensus 14 ~~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a--~-~~~~~~~~~A~~~g-~~ 89 (280)
T cd07945 14 VSFSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLG--F-VDGDKSVDWIKSAG-AK 89 (280)
T ss_pred CccCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEE--e-cCcHHHHHHHHHCC-CC
Confidence 45788888887655558889999998 5 567777777777653210 133322 1 23455677666553 35
Q ss_pred EEEecc-------------CccccHHHHHHHHHHHHHcCCcEEecCCC-C---CChhHHHHH---HHhhhcCCccccCC
Q 013317 349 ALLLKV-------------NQIGSVTESIEAVKMAKRAGWGVMASHRS-G---ETEDTFIAD---LSVGLATGQIKTGA 407 (445)
Q Consensus 349 ~v~ik~-------------~k~GGit~a~~i~~~A~~~g~~~~~~~~~-~---et~~~~~~~---la~a~~~~~~~~G~ 407 (445)
.+.+-+ +.-.-+....+++++|++.|+.+.++-.. + .+.....++ .+...++..+.+.+
T Consensus 90 ~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~l~D 168 (280)
T cd07945 90 VLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIMLPD 168 (280)
T ss_pred EEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 555443 23345666778899999999987655531 1 233334333 34555777776555
No 107
>PLN02321 2-isopropylmalate synthase
Probab=69.88 E-value=1e+02 Score=33.86 Aligned_cols=128 Identities=17% Similarity=0.210 Sum_probs=77.8
Q ss_pred CCcChHHHHHHHHHhhhcCCeeEEE--CC-CCccCHHHHHHHHHHhCCce------E-EEeccccccCHHHHHHHHhcC-
Q 013317 277 QKVSGDGLKNVYRSFISDHPIVSIE--DP-FDQDDWEHYAELTGKIGRHV------Q-IVGDDLLVTNPKRVEKAIKEK- 345 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~~iE--dP-~~~~D~~~~~~L~~~~~~~~------p-I~gde~~~~~~~~~~~~i~~~- 345 (445)
..++.+|-+++ .+.|++.++..|| =| ..++|++.++++.+.....+ | |++= ...+..++...++..
T Consensus 103 ~~~s~eeKl~I-a~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~--~ra~~~dId~A~~al~ 179 (632)
T PLN02321 103 ATLTSKEKLDI-ARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGL--SRCNKKDIDAAWEAVK 179 (632)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeee--hhccHHhHHHHHHHhc
Confidence 35889999987 4568999999999 45 35688999999977643212 3 2222 123578888877642
Q ss_pred CCC--EEEecc-------------CccccHHHHHHHHHHHHHcCC-cEEecCC-CCCChhHHH---HHHHhhhcCCcccc
Q 013317 346 TCN--ALLLKV-------------NQIGSVTESIEAVKMAKRAGW-GVMASHR-SGETEDTFI---ADLSVGLATGQIKT 405 (445)
Q Consensus 346 a~d--~v~ik~-------------~k~GGit~a~~i~~~A~~~g~-~~~~~~~-~~et~~~~~---~~la~a~~~~~~~~ 405 (445)
.++ .+.+-+ ++---+..+.+++++|+++|. .+.+++. .+.+...+. +..+...++..+.+
T Consensus 180 ~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L 259 (632)
T PLN02321 180 HAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNI 259 (632)
T ss_pred CCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 111 222221 222334446678889999988 4767663 223444443 34455557777775
Q ss_pred CC
Q 013317 406 GA 407 (445)
Q Consensus 406 G~ 407 (445)
.+
T Consensus 260 ~D 261 (632)
T PLN02321 260 PD 261 (632)
T ss_pred cc
Confidence 55
No 108
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=69.78 E-value=1.1e+02 Score=29.41 Aligned_cols=128 Identities=9% Similarity=0.038 Sum_probs=81.1
Q ss_pred CCcChHHHHHHHHHhhhcCCeeEEEC--------------CCCccCHHHHHHHHHHhCCceEE--EeccccccCHHHHHH
Q 013317 277 QKVSGDGLKNVYRSFISDHPIVSIED--------------PFDQDDWEHYAELTGKIGRHVQI--VGDDLLVTNPKRVEK 340 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~~iEd--------------P~~~~D~~~~~~L~~~~~~~~pI--~gde~~~~~~~~~~~ 340 (445)
..++.++.++++ +.+.+.++..||= |...++++..+++++..+ ++.+ +..-. ..+..++..
T Consensus 17 ~~~~~~~k~~i~-~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~-~~~~~~~~~~~-~~~~~~i~~ 93 (263)
T cd07943 17 HQFTLEQVRAIA-RALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALK-QAKLGVLLLPG-IGTVDDLKM 93 (263)
T ss_pred eecCHHHHHHHH-HHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhcc-CCEEEEEecCC-ccCHHHHHH
Confidence 346788888875 5578899999987 445567788888876543 2443 32222 234788887
Q ss_pred HHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCC-CCCChhHHHH---HHHhhhcCCccccCCCC
Q 013317 341 AIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHR-SGETEDTFIA---DLSVGLATGQIKTGAPC 409 (445)
Q Consensus 341 ~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~-~~et~~~~~~---~la~a~~~~~~~~G~~~ 409 (445)
..+. .+|.+.+-.... =+..++++++.|++.|+.+.+.-+ .......... ..+...++..+.+.+-.
T Consensus 94 a~~~-g~~~iri~~~~s-~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~ 164 (263)
T cd07943 94 AADL-GVDVVRVATHCT-EADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDSA 164 (263)
T ss_pred HHHc-CCCEEEEEechh-hHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 7765 578888654332 245788899999999988754431 2233334333 33455577777755533
No 109
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=69.76 E-value=45 Score=31.62 Aligned_cols=65 Identities=9% Similarity=0.140 Sum_probs=43.9
Q ss_pred HHHHHHHhhhcCCee--EEECCCCc---cCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEe
Q 013317 284 LKNVYRSFISDHPIV--SIEDPFDQ---DDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 284 ~i~~~~~~~~~~~i~--~iEdP~~~---~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
.+++ .+.+++.+.. .|.+-.+. -|++..+++++.++ ++||+|.-. +.+.+++.++++. .+|.|++
T Consensus 150 ~~~~-a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~-~ipIIgNGg-I~s~eda~e~l~~-GAd~Vmv 219 (231)
T TIGR00736 150 ELID-ALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFN-DKIIIGNNS-IDDIESAKEMLKA-GADFVSV 219 (231)
T ss_pred HHHH-HHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcC-CCcEEEECC-cCCHHHHHHHHHh-CCCeEEE
Confidence 3444 4456666644 34443332 26888888888872 299977766 5779999999984 5888876
No 110
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=68.86 E-value=45 Score=31.56 Aligned_cols=64 Identities=11% Similarity=0.173 Sum_probs=39.6
Q ss_pred HHHHHHHHhhhcCCeeEE--ECCC--CccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEec
Q 013317 283 GLKNVYRSFISDHPIVSI--EDPF--DQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 283 ~~i~~~~~~~~~~~i~~i--EdP~--~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
+.+++ .+.+++.++.+| ..-. ..-|++..++++ .+ +||+|.-. +++.+++.++++.+ +|.|++-
T Consensus 153 ~~~~l-a~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~--~~--ipVIgnGg-I~s~eda~~~l~~G-aD~VmiG 220 (233)
T cd02911 153 DDEEL-ARLIEKAGADIIHVDAMDPGNHADLKKIRDIS--TE--LFIIGNNS-VTTIESAKEMFSYG-ADMVSVA 220 (233)
T ss_pred CHHHH-HHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc--CC--CEEEEECC-cCCHHHHHHHHHcC-CCEEEEc
Confidence 34443 345666665443 1111 123555555554 45 99877655 57899999999876 9998874
No 111
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=68.83 E-value=15 Score=39.99 Aligned_cols=74 Identities=12% Similarity=0.195 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHh---CCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccH----------------------HH
Q 013317 308 DWEHYAELTGKI---GRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV----------------------TE 362 (445)
Q Consensus 308 D~~~~~~L~~~~---~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGi----------------------t~ 362 (445)
+-+.+..+++++ +.++|+++|=.+ ++.-+...++. +|-|.|.++.+|.- ..
T Consensus 136 ~A~al~~I~~~L~~~g~~iPLVADIHF--~~~~Al~a~~~--vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~ 211 (733)
T PLN02925 136 EADACFEIKNTLVQKGYNIPLVADIHF--APSVALRVAEC--FDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEV 211 (733)
T ss_pred HHHhHHHHHHHHhhcCCCCCEEEecCC--CHHHHHHHHHh--cCCeEECCcccCCccccccccccchhhhhhhHHHHHHH
Confidence 345556666641 123999999654 46666666654 99999999999876 34
Q ss_pred HHHHHHHHHHcCCcEEecCCCCC
Q 013317 363 SIEAVKMAKRAGWGVMASHRSGE 385 (445)
Q Consensus 363 a~~i~~~A~~~g~~~~~~~~~~e 385 (445)
...+++.|+++|+.+-+|-+.|-
T Consensus 212 f~~~v~~ak~~~~~iRIGvN~GS 234 (733)
T PLN02925 212 FTPLVEKCKKYGRAMRIGTNHGS 234 (733)
T ss_pred HHHHHHHHHHCCCCEEEecCCcC
Confidence 55699999999999999987653
No 112
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=68.09 E-value=83 Score=30.49 Aligned_cols=93 Identities=19% Similarity=0.225 Sum_probs=64.6
Q ss_pred HHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHH
Q 013317 282 DGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVT 361 (445)
Q Consensus 282 ~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit 361 (445)
.+-++.+++..+++++.++=+|+.+.+.+.+.++. + -..|.+-+. ++.. +.+.+ .+.--.|++|-+..+.+.
T Consensus 77 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~v---d-~~kIga~~~--~n~~-LL~~~-a~~gkPV~lk~G~~~s~~ 148 (266)
T PRK13398 77 EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADYA---D-MLQIGSRNM--QNFE-LLKEV-GKTKKPILLKRGMSATLE 148 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHhC---C-EEEECcccc--cCHH-HHHHH-hcCCCcEEEeCCCCCCHH
Confidence 44455567778899999999999998887777662 2 134444433 4533 44443 344568889999989999
Q ss_pred HHHHHHHHHHHcCC-cEEecCC
Q 013317 362 ESIEAVKMAKRAGW-GVMASHR 382 (445)
Q Consensus 362 ~a~~i~~~A~~~g~-~~~~~~~ 382 (445)
+++.+++..+..|- .+++-|+
T Consensus 149 e~~~A~e~i~~~Gn~~i~L~~r 170 (266)
T PRK13398 149 EWLYAAEYIMSEGNENVVLCER 170 (266)
T ss_pred HHHHHHHHHHhcCCCeEEEEEC
Confidence 99999988887765 4566554
No 113
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=67.99 E-value=1.3e+02 Score=30.49 Aligned_cols=125 Identities=18% Similarity=0.134 Sum_probs=74.6
Q ss_pred CCcChHHHHHHHHHhhhcCCeeEEECC--CCc-------cCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCC
Q 013317 277 QKVSGDGLKNVYRSFISDHPIVSIEDP--FDQ-------DDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTC 347 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~~iEdP--~~~-------~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~ 347 (445)
..++.++-++++ +.|.+.++..||-- ..+ ++.+..+.+++..+.+++. + +.+..++++.++.+ +
T Consensus 63 ~~~s~e~Ki~ia-~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~~----l-~~n~~die~A~~~g-~ 135 (347)
T PLN02746 63 NIVPTSVKVELI-QRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFPV----L-TPNLKGFEAAIAAG-A 135 (347)
T ss_pred CCCCHHHHHHHH-HHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHhccCCceeE----E-cCCHHHHHHHHHcC-c
Confidence 457888888864 56788999999953 222 4455667776533312232 2 34689999998875 4
Q ss_pred CEEEeccC---------ccccHHHH----HHHHHHHHHcCCcEE------ecCC-CCCChhHH---HHHHHhhhcCCccc
Q 013317 348 NALLLKVN---------QIGSVTES----IEAVKMAKRAGWGVM------ASHR-SGETEDTF---IADLSVGLATGQIK 404 (445)
Q Consensus 348 d~v~ik~~---------k~GGit~a----~~i~~~A~~~g~~~~------~~~~-~~et~~~~---~~~la~a~~~~~~~ 404 (445)
+.+.+-++ .--+..++ .+++++|+++|+.+. +++. .+.+.... .+.-++..++..+.
T Consensus 136 ~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~ 215 (347)
T PLN02746 136 KEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEIS 215 (347)
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 55554421 11234444 468999999999873 3331 11222233 34445666788877
Q ss_pred cCCC
Q 013317 405 TGAP 408 (445)
Q Consensus 405 ~G~~ 408 (445)
+.+-
T Consensus 216 l~DT 219 (347)
T PLN02746 216 LGDT 219 (347)
T ss_pred ecCC
Confidence 5553
No 114
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=64.96 E-value=80 Score=29.26 Aligned_cols=110 Identities=19% Similarity=0.229 Sum_probs=72.3
Q ss_pred ChHHHHHHHHHhhhcCCeeEEECCCCccC-HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccc
Q 013317 280 SGDGLKNVYRSFISDHPIVSIEDPFDQDD-WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 358 (445)
Q Consensus 280 t~~~~i~~~~~~~~~~~i~~iEdP~~~~D-~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~G 358 (445)
+.+++.+... .+-+.++..||=.+...+ .+.+++|+++.+.++.|-..- +.+.+++...++.++ +++.. +
T Consensus 20 ~~~~~~~~~~-a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGT--V~~~~~~~~a~~aGA-~fivs-----p 90 (206)
T PRK09140 20 TPDEALAHVG-ALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGT--VLSPEQVDRLADAGG-RLIVT-----P 90 (206)
T ss_pred CHHHHHHHHH-HHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEe--cCCHHHHHHHHHcCC-CEEEC-----C
Confidence 5677777644 456688999998886544 557888888886445664443 456899999988877 55443 2
Q ss_pred cHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhcCCcccc
Q 013317 359 SVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKT 405 (445)
Q Consensus 359 Git~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~ 405 (445)
+.. .++.+.|+..|+.+.+|+.+. ++ +.-|...++.++++
T Consensus 91 ~~~--~~v~~~~~~~~~~~~~G~~t~-~E----~~~A~~~Gad~vk~ 130 (206)
T PRK09140 91 NTD--PEVIRRAVALGMVVMPGVATP-TE----AFAALRAGAQALKL 130 (206)
T ss_pred CCC--HHHHHHHHHCCCcEEcccCCH-HH----HHHHHHcCCCEEEE
Confidence 222 356677888899987776422 22 23344457777774
No 115
>PRK06852 aldolase; Validated
Probab=64.15 E-value=35 Score=33.77 Aligned_cols=71 Identities=17% Similarity=0.117 Sum_probs=49.7
Q ss_pred HHHHHhcCC-----CCEEEeccCccc-----cHHHHHHHHHHHHHcCCcEEecC-CCC-----CC---hhHHHHHHHhhh
Q 013317 338 VEKAIKEKT-----CNALLLKVNQIG-----SVTESIEAVKMAKRAGWGVMASH-RSG-----ET---EDTFIADLSVGL 398 (445)
Q Consensus 338 ~~~~i~~~a-----~d~v~ik~~k~G-----Git~a~~i~~~A~~~g~~~~~~~-~~~-----et---~~~~~~~la~a~ 398 (445)
++++++.++ +|+|.+-+..-+ -+.++-++++.|+++|+++++-. -.+ +. .++.++++|+-+
T Consensus 121 VeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaEL 200 (304)
T PRK06852 121 VEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACL 200 (304)
T ss_pred HHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHH
Confidence 556666664 778877765422 46677888899999999987521 111 11 245678899999
Q ss_pred cCCccccCCC
Q 013317 399 ATGQIKTGAP 408 (445)
Q Consensus 399 ~~~~~~~G~~ 408 (445)
|+.++|.-.+
T Consensus 201 GADIVKv~y~ 210 (304)
T PRK06852 201 GADFVKVNYP 210 (304)
T ss_pred cCCEEEecCC
Confidence 9999997666
No 116
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=64.08 E-value=43 Score=32.74 Aligned_cols=40 Identities=10% Similarity=0.113 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEec
Q 013317 310 EHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 310 ~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
+...++++.++ +||++.-- +++++++.++++.+ +|.|++=
T Consensus 224 ~~v~~i~~~~~--ipvi~~GG-I~s~~da~~~l~~G-Ad~V~ig 263 (300)
T TIGR01037 224 RMVYDVYKMVD--IPIIGVGG-ITSFEDALEFLMAG-ASAVQVG 263 (300)
T ss_pred HHHHHHHhcCC--CCEEEECC-CCCHHHHHHHHHcC-CCceeec
Confidence 45567777776 88866544 46799999999877 8988865
No 117
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=63.90 E-value=69 Score=32.49 Aligned_cols=96 Identities=17% Similarity=0.202 Sum_probs=57.0
Q ss_pred CCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCc
Q 013317 277 QKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 356 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k 356 (445)
+++..+. .+.+.+..+++++.|+=+|+..++.+-..++... +.|.+.+ +++..=++.+.. .--.|++|-+.
T Consensus 164 ~g~~~e~-l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~vd~----lkI~s~~--~~n~~LL~~~a~--~gkPVilk~G~ 234 (360)
T PRK12595 164 QGLGVEG-LKILKQVADEYGLAVISEIVNPADVEVALDYVDV----IQIGARN--MQNFELLKAAGR--VNKPVLLKRGL 234 (360)
T ss_pred cCCCHHH-HHHHHHHHHHcCCCEEEeeCCHHHHHHHHHhCCe----EEECccc--ccCHHHHHHHHc--cCCcEEEeCCC
Confidence 3444543 4455777889999999999988887777665221 2333333 244333333322 23366677776
Q ss_pred cccHHHHHHHHHHHHHcCC-cEEecC
Q 013317 357 IGSVTESIEAVKMAKRAGW-GVMASH 381 (445)
Q Consensus 357 ~GGit~a~~i~~~A~~~g~-~~~~~~ 381 (445)
..++.++..+++...+.|- ++++-|
T Consensus 235 ~~t~~e~~~Ave~i~~~Gn~~i~L~e 260 (360)
T PRK12595 235 SATIEEFIYAAEYIMSQGNGQIILCE 260 (360)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEC
Confidence 6677777777776666654 355554
No 118
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=63.50 E-value=62 Score=30.32 Aligned_cols=141 Identities=18% Similarity=0.202 Sum_probs=83.6
Q ss_pred CcChHHHHHHHHHhhhcCCeeEEECCC---CccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHh---cCCCCEEE
Q 013317 278 KVSGDGLKNVYRSFISDHPIVSIEDPF---DQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIK---EKTCNALL 351 (445)
Q Consensus 278 ~~t~~~~i~~~~~~~~~~~i~~iEdP~---~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~---~~a~d~v~ 351 (445)
.++.++.++++ +.+++.++..||=.+ .+++++.++++++.... ..+.+-- .....+++..++ ...++.+.
T Consensus 10 ~~~~~~k~~i~-~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~~~~~~i~~~~~~~~~~g~~~i~ 85 (237)
T PF00682_consen 10 AFSTEEKLEIA-KALDEAGVDYIEVGFPFASEDDFEQVRRLREALPN-ARLQALC--RANEEDIERAVEAAKEAGIDIIR 85 (237)
T ss_dssp T--HHHHHHHH-HHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHS-SEEEEEE--ESCHHHHHHHHHHHHHTTSSEEE
T ss_pred CcCHHHHHHHH-HHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcc-cccceee--eehHHHHHHHHHhhHhccCCEEE
Confidence 36778888764 567889999999763 45677888888877653 4443321 234666766443 45666666
Q ss_pred eccCcc-------------ccHHHHHHHHHHHHHcCCcEEecCCC-CCChhHHH---HHHHhhhcCCccccCCCCCchhH
Q 013317 352 LKVNQI-------------GSVTESIEAVKMAKRAGWGVMASHRS-GETEDTFI---ADLSVGLATGQIKTGAPCRSERL 414 (445)
Q Consensus 352 ik~~k~-------------GGit~a~~i~~~A~~~g~~~~~~~~~-~et~~~~~---~~la~a~~~~~~~~G~~~~~er~ 414 (445)
+=.+.. ..+..+.+++++|++.|..+.++... ..+..... +..+...++..+.+-+-.+.-.=
T Consensus 86 i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P 165 (237)
T PF00682_consen 86 IFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVGIMTP 165 (237)
T ss_dssp EEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-H
T ss_pred ecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCH
Confidence 544332 23778889999999999999877743 23334433 34444457777665443333222
Q ss_pred HHHHHHHH
Q 013317 415 AKYNQLLR 422 (445)
Q Consensus 415 ~k~n~ll~ 422 (445)
..+.++++
T Consensus 166 ~~v~~lv~ 173 (237)
T PF00682_consen 166 EDVAELVR 173 (237)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33344443
No 119
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=63.36 E-value=44 Score=30.01 Aligned_cols=87 Identities=18% Similarity=0.153 Sum_probs=48.9
Q ss_pred HHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcC--CcEEecCCCCCCh
Q 013317 310 EHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAG--WGVMASHRSGETE 387 (445)
Q Consensus 310 ~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g--~~~~~~~~~~et~ 387 (445)
+.++++++..+...+|.-+ +.+.+++.++++.+ +|+|++|-+. ..+.+++++..+..+ +.+.++.+ ..
T Consensus 68 ~av~~~~~~~~~~~~I~VE---v~~~ee~~ea~~~g-~d~I~lD~~~---~~~~~~~v~~l~~~~~~v~ie~SGG---I~ 137 (169)
T PF01729_consen 68 EAVKAARQAAPEKKKIEVE---VENLEEAEEALEAG-ADIIMLDNMS---PEDLKEAVEELRELNPRVKIEASGG---IT 137 (169)
T ss_dssp HHHHHHHHHSTTTSEEEEE---ESSHHHHHHHHHTT--SEEEEES-C---HHHHHHHHHHHHHHTTTSEEEEESS---SS
T ss_pred HHHHHHHHhCCCCceEEEE---cCCHHHHHHHHHhC-CCEEEecCcC---HHHHHHHHHHHhhcCCcEEEEEECC---CC
Confidence 5667777776554445333 34678888888866 8999999884 466666666555544 44444443 22
Q ss_pred hHHHHHHHhhhcCCccccCC
Q 013317 388 DTFIADLSVGLATGQIKTGA 407 (445)
Q Consensus 388 ~~~~~~la~a~~~~~~~~G~ 407 (445)
...+..+| .++..++-.|.
T Consensus 138 ~~ni~~ya-~~gvD~isvg~ 156 (169)
T PF01729_consen 138 LENIAEYA-KTGVDVISVGS 156 (169)
T ss_dssp TTTHHHHH-HTT-SEEEECH
T ss_pred HHHHHHHH-hcCCCEEEcCh
Confidence 23334443 23455555544
No 120
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=63.20 E-value=16 Score=35.06 Aligned_cols=90 Identities=12% Similarity=0.093 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhcCCeeEE-ECCCCc------cCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccC
Q 013317 283 GLKNVYRSFISDHPIVSI-EDPFDQ------DDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN 355 (445)
Q Consensus 283 ~~i~~~~~~~~~~~i~~i-EdP~~~------~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~ 355 (445)
+.+++. +.+++.++..| =..+.. -|++.++++++.++ +||++--- +++++++.++++.+.+|.+.+--.
T Consensus 156 ~~~~~~-~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~--ipvia~GG-i~s~~di~~~~~~g~~dgv~~g~a 231 (254)
T TIGR00735 156 DAVEWA-KEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVK--IPVIASGG-AGKPEHFYEAFTKGKADAALAASV 231 (254)
T ss_pred CHHHHH-HHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCC--CCEEEeCC-CCCHHHHHHHHHcCCcceeeEhHH
Confidence 445543 34566664432 122222 36788899999887 77633222 357999999999988999876433
Q ss_pred -ccccHHHHHHHHHHHHHcCCcE
Q 013317 356 -QIGSVTESIEAVKMAKRAGWGV 377 (445)
Q Consensus 356 -k~GGit~a~~i~~~A~~~g~~~ 377 (445)
..|.+ ...++.+.++++|+++
T Consensus 232 ~~~~~~-~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 232 FHYREI-TIGEVKEYLAERGIPV 253 (254)
T ss_pred HhCCCC-CHHHHHHHHHHCCCcc
Confidence 23443 4667777888888863
No 121
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=63.13 E-value=1.1e+02 Score=29.42 Aligned_cols=95 Identities=18% Similarity=0.241 Sum_probs=57.4
Q ss_pred CcChHHHHHHHHHhhhcCCeeEEE----------CCCCcc-CHHH----HHHHHHHhCCceEEEeccccccCHHHHHHHH
Q 013317 278 KVSGDGLKNVYRSFISDHPIVSIE----------DPFDQD-DWEH----YAELTGKIGRHVQIVGDDLLVTNPKRVEKAI 342 (445)
Q Consensus 278 ~~t~~~~i~~~~~~~~~~~i~~iE----------dP~~~~-D~~~----~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i 342 (445)
..+.+++++...+++++ +-.+|. +|+.++ +++- .+.|+...+ +||+-|-. +++-++.++
T Consensus 20 ~~~~~~~~~~a~~~~~~-GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~--~plSIDT~---~~~v~e~al 93 (257)
T cd00739 20 FLSLDKAVAHAEKMIAE-GADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELD--VLISVDTF---RAEVARAAL 93 (257)
T ss_pred CCCHHHHHHHHHHHHHC-CCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCC--CcEEEeCC---CHHHHHHHH
Confidence 35677888776665553 333332 122221 1222 233444444 99999953 478888899
Q ss_pred hcCCCCEEE-eccCccccHHHHHHHHHHHHHcCCcEEecCCCC
Q 013317 343 KEKTCNALL-LKVNQIGSVTESIEAVKMAKRAGWGVMASHRSG 384 (445)
Q Consensus 343 ~~~a~d~v~-ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~ 384 (445)
+.+ +++|| +...+ .. -++..+++.+|..+++-|+.+
T Consensus 94 ~~G-~~iINdisg~~----~~-~~~~~l~~~~~~~vV~m~~~g 130 (257)
T cd00739 94 EAG-ADIINDVSGGS----DD-PAMLEVAAEYGAPLVLMHMRG 130 (257)
T ss_pred HhC-CCEEEeCCCCC----CC-hHHHHHHHHcCCCEEEECCCC
Confidence 886 77776 33221 11 567888999999999888643
No 122
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=63.10 E-value=95 Score=31.27 Aligned_cols=68 Identities=10% Similarity=0.282 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhhcCCeeEE---------ECC-CCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEE
Q 013317 282 DGLKNVYRSFISDHPIVSI---------EDP-FDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALL 351 (445)
Q Consensus 282 ~~~i~~~~~~~~~~~i~~i---------EdP-~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ 351 (445)
++.+++ ++.+++.|..|| ..+ ..+-|++.++.|++.+++ +|+++.-. +.+++|+.+.++.-.+|+|+
T Consensus 155 ~kTvd~-ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipviaNGn-I~~~~d~~~~~~~tG~dGVM 231 (358)
T KOG2335|consen 155 EKTVDY-AKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD-IPVIANGN-ILSLEDVERCLKYTGADGVM 231 (358)
T ss_pred HHHHHH-HHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcEEeeCC-cCcHHHHHHHHHHhCCceEE
Confidence 455665 446777775554 222 456689999999999875 89877665 57799999999988888887
Q ss_pred e
Q 013317 352 L 352 (445)
Q Consensus 352 i 352 (445)
.
T Consensus 232 ~ 232 (358)
T KOG2335|consen 232 S 232 (358)
T ss_pred e
Confidence 3
No 123
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=62.92 E-value=1.2e+02 Score=28.90 Aligned_cols=119 Identities=12% Similarity=0.209 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCee-EE------E
Q 013317 229 FELLKTAIAKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIV-SI------E 301 (445)
Q Consensus 229 l~~v~~ai~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~-~i------E 301 (445)
.+.+++++++-| +++.+.+|+.-...-- ..|.- ....++.++++. ++++++. +| |
T Consensus 111 p~~v~~~~~~~g--~rivv~lD~r~g~vav---~GW~e---------~s~~~~~~l~~~----~~~~g~~~ii~TdI~~D 172 (241)
T COG0106 111 PDLVKELCEEYG--DRIVVALDARDGKVAV---SGWQE---------DSGVELEELAKR----LEEVGLAHILYTDISRD 172 (241)
T ss_pred HHHHHHHHHHcC--CcEEEEEEccCCcccc---ccccc---------cccCCHHHHHHH----HHhcCCCeEEEEecccc
Confidence 356777787766 6799999996432211 12332 123455554433 4445422 11 2
Q ss_pred CCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhc-CCCCEEEeccCccc--cHHHHHHHHH
Q 013317 302 DPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKE-KTCNALLLKVNQIG--SVTESIEAVK 368 (445)
Q Consensus 302 dP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~-~a~d~v~ik~~k~G--Git~a~~i~~ 368 (445)
--+.-=|++.+++|.+.+. +|+...-- +++.+|++.+-+. +...++.=+---.| .+.++++.++
T Consensus 173 Gtl~G~n~~l~~~l~~~~~--ipviaSGG-v~s~~Di~~l~~~~G~~GvIvG~ALy~g~~~l~ea~~~~~ 239 (241)
T COG0106 173 GTLSGPNVDLVKELAEAVD--IPVIASGG-VSSLDDIKALKELSGVEGVIVGRALYEGKFTLEEALACVR 239 (241)
T ss_pred cccCCCCHHHHHHHHHHhC--cCEEEecC-cCCHHHHHHHHhcCCCcEEEEehHHhcCCCCHHHHHHHHh
Confidence 3344448899999999998 87733222 4679999999877 56666654433333 3466666543
No 124
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=62.79 E-value=75 Score=30.49 Aligned_cols=95 Identities=9% Similarity=0.167 Sum_probs=61.6
Q ss_pred CcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCcc
Q 013317 278 KVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 357 (445)
Q Consensus 278 ~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~ 357 (445)
++-.+ -++.+.+..+++++.++=+|+.+++.+...+. .+ -+.|.+-+ ++|..=++.+.+ .--.|++|-++.
T Consensus 62 G~G~~-gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e~---vd-ilqIgs~~--~~n~~LL~~va~--tgkPVilk~G~~ 132 (250)
T PRK13397 62 GLGLQ-GIRYLHEVCQEFGLLSVSEIMSERQLEEAYDY---LD-VIQVGARN--MQNFEFLKTLSH--IDKPILFKRGLM 132 (250)
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEeeCCHHHHHHHHhc---CC-EEEECccc--ccCHHHHHHHHc--cCCeEEEeCCCC
Confidence 33443 45566777889999999999988776666552 32 13343333 345343333322 346788888888
Q ss_pred ccHHHHHHHHHHHHHcCC-cEEecC
Q 013317 358 GSVTESIEAVKMAKRAGW-GVMASH 381 (445)
Q Consensus 358 GGit~a~~i~~~A~~~g~-~~~~~~ 381 (445)
.++.+++.++++..+.|. ++++-|
T Consensus 133 ~t~~e~~~A~e~i~~~Gn~~i~L~e 157 (250)
T PRK13397 133 ATIEEYLGALSYLQDTGKSNIILCE 157 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEc
Confidence 888888888888887765 466666
No 125
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=62.77 E-value=1.8e+02 Score=29.59 Aligned_cols=126 Identities=14% Similarity=0.176 Sum_probs=79.4
Q ss_pred CCcChHHHHHHHHHhhhcCCeeEEECCCC---ccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEec
Q 013317 277 QKVSGDGLKNVYRSFISDHPIVSIEDPFD---QDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~~iEdP~~---~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
..++.++-+++ .+.+++.++..||=-+| ++|++..+.+.+.. .+..+++-- .....+++.+++.+ ++.+.+=
T Consensus 21 ~~~s~e~k~~i-a~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~~~-~~~~i~~~~--r~~~~di~~a~~~g-~~~i~i~ 95 (378)
T PRK11858 21 VVFTNEEKLAI-ARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAKLG-LNASILALN--RAVKSDIDASIDCG-VDAVHIF 95 (378)
T ss_pred CCCCHHHHHHH-HHHHHHhCCCEEEEeCCCcChHHHHHHHHHHhcC-CCeEEEEEc--ccCHHHHHHHHhCC-cCEEEEE
Confidence 45788998887 45688899999996443 34556777776642 234454432 23478888888765 5666654
Q ss_pred cCc-------------cccHHHHHHHHHHHHHcCCcEEecCCC-CCChhHHHHHH---HhhhcCCccccCC
Q 013317 354 VNQ-------------IGSVTESIEAVKMAKRAGWGVMASHRS-GETEDTFIADL---SVGLATGQIKTGA 407 (445)
Q Consensus 354 ~~k-------------~GGit~a~~i~~~A~~~g~~~~~~~~~-~et~~~~~~~l---a~a~~~~~~~~G~ 407 (445)
+.- -.-+..+.+.+++|++.|+.+.+++.. ..+...+...+ +...++..+.+-+
T Consensus 96 ~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~D 166 (378)
T PRK11858 96 IATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCD 166 (378)
T ss_pred EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 331 122455667899999999998887632 23444554444 4445666666444
No 126
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=62.61 E-value=62 Score=31.66 Aligned_cols=106 Identities=19% Similarity=0.229 Sum_probs=64.6
Q ss_pred EeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhc-CCeeEEE--------CCCCccCHHHH-------
Q 013317 249 MDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISD-HPIVSIE--------DPFDQDDWEHY------- 312 (445)
Q Consensus 249 vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~-~~i~~iE--------dP~~~~D~~~~------- 312 (445)
+++-.+.||+.+ +..+.+++++...+++++ .++.=|= +|++++ +.+
T Consensus 21 lNvTpDSFsdgg----------------~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~e--eE~~Rv~pvI 82 (282)
T PRK11613 21 LNVTPDSFSDGG----------------THNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVE--EELDRVIPVV 82 (282)
T ss_pred EcCCCCCCCCCC----------------CCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHH--HHHHHHHHHH
Confidence 567677777653 334677888776666654 2222121 233332 333
Q ss_pred HHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCC
Q 013317 313 AELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRS 383 (445)
Q Consensus 313 ~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~ 383 (445)
+.|++..+ +||.-|-. +++-++.+++.+ +|+|| -+.|+++ -+++..+..+|..+++-|+.
T Consensus 83 ~~l~~~~~--~~ISIDT~---~~~va~~AL~~G-adiIN----DI~g~~d-~~~~~~~a~~~~~vVlmh~~ 142 (282)
T PRK11613 83 EAIAQRFE--VWISVDTS---KPEVIRESAKAG-AHIIN----DIRSLSE-PGALEAAAETGLPVCLMHMQ 142 (282)
T ss_pred HHHHhcCC--CeEEEECC---CHHHHHHHHHcC-CCEEE----ECCCCCC-HHHHHHHHHcCCCEEEEcCC
Confidence 44444445 99999953 478888899885 77765 2234432 25666778889999988863
No 127
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=62.45 E-value=93 Score=29.05 Aligned_cols=108 Identities=21% Similarity=0.321 Sum_probs=64.5
Q ss_pred eEEEeccccccC----HHHHHHHHhcCCCCEEEeccCcccc---HHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHH
Q 013317 323 VQIVGDDLLVTN----PKRVEKAIKEKTCNALLLKVNQIGS---VTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLS 395 (445)
Q Consensus 323 ~pI~gde~~~~~----~~~~~~~i~~~a~d~v~ik~~k~GG---it~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la 395 (445)
++++.+...+.. ...++++++. .++.+|+..-.... .-.++++..+|+++++++++... +++|
T Consensus 8 lylvt~~~~~~~~~~~~~~ve~al~~-Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~liINd~---------~dlA 77 (211)
T COG0352 8 LYLVTDRPLIYDGVDLLEWVEAALKG-GVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIINDR---------VDLA 77 (211)
T ss_pred eEEEcCCccccccchhHHHHHHHHhC-CCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEEecCc---------HHHH
Confidence 555555432222 2444555544 47888877644433 45678899999999999988775 5555
Q ss_pred hhhcCCccccCCC-----------------CCchhHHHHHHHHHHHHHhCCCccccCccCCCCCC
Q 013317 396 VGLATGQIKTGAP-----------------CRSERLAKYNQLLRIEEELGPAAIYAGTKFRTPVQ 443 (445)
Q Consensus 396 ~a~~~~~~~~G~~-----------------~~~er~~k~n~ll~i~~~l~~~~~~~~~~~~~~~~ 443 (445)
.+.++.-+-+|.= +.| +...-++++.++ ++...+..|+=|.||-.
T Consensus 78 ~~~~AdGVHlGq~D~~~~~ar~~~~~~~iIG~S--~h~~eea~~A~~-~g~DYv~~GpifpT~tK 139 (211)
T COG0352 78 LAVGADGVHLGQDDMPLAEARELLGPGLIIGLS--THDLEEALEAEE-LGADYVGLGPIFPTSTK 139 (211)
T ss_pred HhCCCCEEEcCCcccchHHHHHhcCCCCEEEee--cCCHHHHHHHHh-cCCCEEEECCcCCCCCC
Confidence 5555544444331 011 112333444444 56788888998888754
No 128
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=62.41 E-value=1.8e+02 Score=29.42 Aligned_cols=126 Identities=8% Similarity=0.086 Sum_probs=79.7
Q ss_pred CCcChHHHHHHHHHhhhcCCeeEEECCCCc---cCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEec
Q 013317 277 QKVSGDGLKNVYRSFISDHPIVSIEDPFDQ---DDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~---~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
..++.++.+++ .+.+++.++..||=-+|. +|++..+++.+... +..+++= ...+.++++.+++.+ ++.+.+-
T Consensus 18 ~~~s~~~k~~i-a~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~-~~~i~~~--~r~~~~di~~a~~~g-~~~i~i~ 92 (365)
T TIGR02660 18 VAFTAAEKLAI-ARALDEAGVDELEVGIPAMGEEERAVIRAIVALGL-PARLMAW--CRARDADIEAAARCG-VDAVHIS 92 (365)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHcCC-CcEEEEE--cCCCHHHHHHHHcCC-cCEEEEE
Confidence 45889998887 456889999999995543 45677777776532 2444331 123578888877654 4566554
Q ss_pred cCcc-------------ccHHHHHHHHHHHHHcCCcEEecCCCC-CChhHHHHHH---HhhhcCCccccCC
Q 013317 354 VNQI-------------GSVTESIEAVKMAKRAGWGVMASHRSG-ETEDTFIADL---SVGLATGQIKTGA 407 (445)
Q Consensus 354 ~~k~-------------GGit~a~~i~~~A~~~g~~~~~~~~~~-et~~~~~~~l---a~a~~~~~~~~G~ 407 (445)
+.-. --+..+.+++++|+++|+.+.++.... .+...+.+.+ +...++..+.+.+
T Consensus 93 ~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~D 163 (365)
T TIGR02660 93 IPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFAD 163 (365)
T ss_pred EccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcc
Confidence 4321 124445588999999999988877432 3444544444 4445677766444
No 129
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=61.46 E-value=40 Score=33.59 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEec
Q 013317 309 WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 309 ~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
++..+++++.++.++||+|--- +++.+|+.+++..+ +|.|++-
T Consensus 267 l~~v~~l~~~~~~~ipIi~~GG-I~t~~da~e~l~aG-Ad~V~vg 309 (327)
T cd04738 267 TEVLRELYKLTGGKIPIIGVGG-ISSGEDAYEKIRAG-ASLVQLY 309 (327)
T ss_pred HHHHHHHHHHhCCCCcEEEECC-CCCHHHHHHHHHcC-CCHHhcc
Confidence 4555677777733377754433 45688888888755 7777764
No 130
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=60.86 E-value=44 Score=35.00 Aligned_cols=93 Identities=11% Similarity=0.215 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccC-------c----c--ccHHHHHHHHHHHHHcCC
Q 013317 309 WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN-------Q----I--GSVTESIEAVKMAKRAGW 375 (445)
Q Consensus 309 ~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~-------k----~--GGit~a~~i~~~A~~~g~ 375 (445)
++..++++++.+ ++||++... .++++++.+++.+ +|+|.+-++ + + ..++...++++.|+..++
T Consensus 253 ~~~i~~i~~~~~-~~~vi~G~v--~t~~~a~~l~~aG-ad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~v 328 (450)
T TIGR01302 253 IDSIKEIKKTYP-DLDIIAGNV--ATAEQAKALIDAG-ADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGI 328 (450)
T ss_pred HHHHHHHHHhCC-CCCEEEEeC--CCHHHHHHHHHhC-CCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCC
Confidence 456677887753 389866654 4699999999876 577765431 1 1 234666778888999999
Q ss_pred cEEecCCCCCChhHHHHHHHhhhcCCccccCCC
Q 013317 376 GVMASHRSGETEDTFIADLSVGLATGQIKTGAP 408 (445)
Q Consensus 376 ~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~ 408 (445)
+++..... -+.-. +--|+++|+..+..|..
T Consensus 329 pviadGGi-~~~~d--i~kAla~GA~~V~~G~~ 358 (450)
T TIGR01302 329 PVIADGGI-RYSGD--IVKALAAGADAVMLGSL 358 (450)
T ss_pred eEEEeCCC-CCHHH--HHHHHHcCCCEEEECch
Confidence 98754422 22222 22345557888888774
No 131
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=59.68 E-value=1.5e+02 Score=27.41 Aligned_cols=72 Identities=18% Similarity=0.288 Sum_probs=49.9
Q ss_pred CccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecC
Q 013317 305 DQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASH 381 (445)
Q Consensus 305 ~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~ 381 (445)
...+++.++.+++... +||..... ..+++.++.+.+.+ +|.+.+...-.. ...+.++.+.+...|+.+++..
T Consensus 57 ~~g~~~~~~~i~~~v~--iPi~~~~~-i~~~~~v~~~~~~G-ad~v~l~~~~~~-~~~~~~~~~~~~~~g~~~~v~v 128 (217)
T cd00331 57 FQGSLEDLRAVREAVS--LPVLRKDF-IIDPYQIYEARAAG-ADAVLLIVAALD-DEQLKELYELARELGMEVLVEV 128 (217)
T ss_pred cCCCHHHHHHHHHhcC--CCEEECCe-ecCHHHHHHHHHcC-CCEEEEeeccCC-HHHHHHHHHHHHHcCCeEEEEE
Confidence 3467888999999887 88854444 56677777777666 566665443332 3677788888888899876655
No 132
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=58.06 E-value=92 Score=30.33 Aligned_cols=56 Identities=7% Similarity=0.058 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHH
Q 013317 308 DWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAV 367 (445)
Q Consensus 308 D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~ 367 (445)
.++..+++++.++ +||++.-- +++++++.++++.+ +|.|++=-.-..+..=..++.
T Consensus 219 ~~~~i~~i~~~~~--ipii~~GG-I~~~~da~~~l~~G-Ad~V~igra~l~~p~~~~~i~ 274 (296)
T cd04740 219 ALRMVYQVYKAVE--IPIIGVGG-IASGEDALEFLMAG-ASAVQVGTANFVDPEAFKEII 274 (296)
T ss_pred HHHHHHHHHHhcC--CCEEEECC-CCCHHHHHHHHHcC-CCEEEEchhhhcChHHHHHHH
Confidence 3466677888776 88866544 56799999999988 699997654433444344433
No 133
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=57.82 E-value=92 Score=32.90 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccC-------------ccccHHHHHHHHHHHHHcCC
Q 013317 309 WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN-------------QIGSVTESIEAVKMAKRAGW 375 (445)
Q Consensus 309 ~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~-------------k~GGit~a~~i~~~A~~~g~ 375 (445)
.+..+++++..+ .+||+++.. .+.+.++.+++.++ |+|.+-.. -...++..+++++.|+.+++
T Consensus 254 ~~~i~~i~~~~~-~~~vi~g~~--~t~~~~~~l~~~G~-d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~ 329 (475)
T TIGR01303 254 ISAIKAVRALDL-GVPIVAGNV--VSAEGVRDLLEAGA-NIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGG 329 (475)
T ss_pred HHHHHHHHHHCC-CCeEEEecc--CCHHHHHHHHHhCC-CEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCC
Confidence 445677777652 399988864 45899999988765 77663221 12457788888888899999
Q ss_pred cEEecCCCCCChhHHHHHHHhhhcCCccccCCCC
Q 013317 376 GVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 376 ~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
+++.......+.+ +--|+++++..+..|++.
T Consensus 330 ~viadGgi~~~~d---i~kala~GA~~vm~g~~~ 360 (475)
T TIGR01303 330 HVWADGGVRHPRD---VALALAAGASNVMVGSWF 360 (475)
T ss_pred cEEEeCCCCCHHH---HHHHHHcCCCEEeechhh
Confidence 9865543222222 222445567777777643
No 134
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=57.22 E-value=75 Score=31.88 Aligned_cols=94 Identities=13% Similarity=0.145 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccC-------c----c--ccHHHHHHHHHHHHHcCC
Q 013317 309 WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN-------Q----I--GSVTESIEAVKMAKRAGW 375 (445)
Q Consensus 309 ~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~-------k----~--GGit~a~~i~~~A~~~g~ 375 (445)
++..++|+++.+. .+|++... + ++++++.+++.+ +|++.+-+. | + .-+|...++++.|+.+++
T Consensus 138 i~~ik~ir~~~p~-~~viaGNV-~-T~e~a~~Li~aG-AD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v 213 (343)
T TIGR01305 138 VEFVKLVREAFPE-HTIMAGNV-V-TGEMVEELILSG-ADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKG 213 (343)
T ss_pred HHHHHHHHhhCCC-CeEEEecc-c-CHHHHHHHHHcC-CCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCC
Confidence 4566777877753 67777765 3 599999998864 677665421 1 2 368888999999998899
Q ss_pred cEEecCCCCCChhHHHHHHHhhhcCCccccCCCC
Q 013317 376 GVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 376 ~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
+++.....-.+.| +--|+|+++.++..|++.
T Consensus 214 ~VIaDGGIr~~gD---I~KALA~GAd~VMlG~ll 244 (343)
T TIGR01305 214 HIISDGGCTCPGD---VAKAFGAGADFVMLGGMF 244 (343)
T ss_pred eEEEcCCcCchhH---HHHHHHcCCCEEEECHhh
Confidence 9865543222222 223556678888888744
No 135
>PRK00915 2-isopropylmalate synthase; Validated
Probab=56.88 E-value=2.7e+02 Score=29.68 Aligned_cols=127 Identities=14% Similarity=0.165 Sum_probs=78.0
Q ss_pred CCcChHHHHHHHHHhhhcCCeeEEECCC---CccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhc---CCCCEE
Q 013317 277 QKVSGDGLKNVYRSFISDHPIVSIEDPF---DQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKE---KTCNAL 350 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~~iEdP~---~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~---~a~d~v 350 (445)
..+|.++-+++ .+.|++.++..||=-+ .+.|++..+++.+... +..|++=- ..+..++...++. -..+.+
T Consensus 21 ~~~s~e~K~~i-a~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~~~-~~~i~a~~--r~~~~did~a~~a~~~~~~~~v 96 (513)
T PRK00915 21 ASLTVEEKLQI-AKQLERLGVDVIEAGFPASSPGDFEAVKRIARTVK-NSTVCGLA--RAVKKDIDAAAEALKPAEAPRI 96 (513)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEcCCCCChHHHHHHHHHHhhCC-CCEEEEEc--cCCHHHHHHHHHHhhcCCCCEE
Confidence 35788998887 4568999999999844 4677888888876543 35553321 1246777777632 223334
Q ss_pred EeccC-------------ccccHHHHHHHHHHHHHcCCcEEecCCCC-CChhHHHHH---HHhhhcCCccccCC
Q 013317 351 LLKVN-------------QIGSVTESIEAVKMAKRAGWGVMASHRSG-ETEDTFIAD---LSVGLATGQIKTGA 407 (445)
Q Consensus 351 ~ik~~-------------k~GGit~a~~i~~~A~~~g~~~~~~~~~~-et~~~~~~~---la~a~~~~~~~~G~ 407 (445)
.+-.. +-.-+..+.+.+++|+++|..+.++.... .+...++.. .+...++..+.+.+
T Consensus 97 ~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 170 (513)
T PRK00915 97 HTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINIPD 170 (513)
T ss_pred EEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEcc
Confidence 43221 11224445688889999999998888432 344444443 34555777776444
No 136
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=56.24 E-value=2.1e+02 Score=28.08 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=48.5
Q ss_pred HHHHHHHhCCceEE--EeccccccCHHHHHHHHhcCCCCEEEeccCccc---cHHHHHHHHHHHHHcCCcE--EecCC
Q 013317 312 YAELTGKIGRHVQI--VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG---SVTESIEAVKMAKRAGWGV--MASHR 382 (445)
Q Consensus 312 ~~~L~~~~~~~~pI--~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~G---Git~a~~i~~~A~~~g~~~--~~~~~ 382 (445)
...+.++.+ +|| =.|. ..+.+.++++++.+ ++.|++|-+..- -+..+++++++|+++|+.+ -+||-
T Consensus 66 ~~~~A~~~~--vPV~lHLDH--~~~~e~i~~Ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~v 138 (283)
T PRK07998 66 VKRHADKMD--VPVSLHLDH--GKTFEDVKQAVRAG-FTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAI 138 (283)
T ss_pred HHHHHHHCC--CCEEEECcC--CCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccC
Confidence 344555555 555 5664 35688999999886 689999988753 3667899999999999876 66774
No 137
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=55.87 E-value=1.7e+02 Score=28.00 Aligned_cols=47 Identities=11% Similarity=0.088 Sum_probs=33.1
Q ss_pred CCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEe
Q 013317 303 PFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 303 P~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
...--|++.++++++.++ +||++.-- +++++|+.++++...+|.+.+
T Consensus 179 ~~~G~d~~~i~~~~~~~~--ipvIasGG-v~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 179 TMKGYDLELLKSFRNALK--IPLIALGG-AGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred CcCCCCHHHHHHHHhhCC--CCEEEeCC-CCCHHHHHHHHHHCCCCEEEE
Confidence 333348999999999987 88733222 467999999986556676653
No 138
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=55.51 E-value=89 Score=33.05 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCc-------------cccHHHHHHHHHHHHHcCC
Q 013317 309 WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ-------------IGSVTESIEAVKMAKRAGW 375 (445)
Q Consensus 309 ~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k-------------~GGit~a~~i~~~A~~~g~ 375 (445)
.+..++++++.+ +++|++.+. .|.+..+.+++.+ +|+|.+=+.- ..-+|...++++.|+.+++
T Consensus 256 ~~~i~~ik~~~p-~~~v~agnv--~t~~~a~~l~~aG-ad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~ 331 (479)
T PRK07807 256 LEALRAVRALDP-GVPIVAGNV--VTAEGTRDLVEAG-ADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGA 331 (479)
T ss_pred HHHHHHHHHHCC-CCeEEeecc--CCHHHHHHHHHcC-CCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCC
Confidence 456788888874 388877664 4589999999876 7887632211 1357778888888889999
Q ss_pred cEEecCCCCCChhHHHHHHHhhhcCCccccCCC
Q 013317 376 GVMASHRSGETEDTFIADLSVGLATGQIKTGAP 408 (445)
Q Consensus 376 ~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~ 408 (445)
+++.......+.+. --|++.++..+..|.+
T Consensus 332 ~via~ggi~~~~~~---~~al~~ga~~v~~g~~ 361 (479)
T PRK07807 332 HVWADGGVRHPRDV---ALALAAGASNVMIGSW 361 (479)
T ss_pred cEEecCCCCCHHHH---HHHHHcCCCeeeccHh
Confidence 98755533233222 2233446667776663
No 139
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=55.28 E-value=2e+02 Score=27.60 Aligned_cols=96 Identities=14% Similarity=0.220 Sum_probs=70.4
Q ss_pred CCcChHHHHHHHHHhhhcCC---eeEE-ECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEe
Q 013317 277 QKVSGDGLKNVYRSFISDHP---IVSI-EDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~---i~~i-EdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
..+++.++++.| ++.+ |..+ |..+-..+++.++++++.++ +||.--+.. -++..+.+... -.+|+|.+
T Consensus 59 ~~~d~~~~A~~y----~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v~--~PvL~KDFI-id~~QI~ea~~-~GADavLL 130 (247)
T PRK13957 59 ADYHPVQIAKTY----ETLGASAISVLTDQSYFGGSLEDLKSVSSELK--IPVLRKDFI-LDEIQIREARA-FGASAILL 130 (247)
T ss_pred CCCCHHHHHHHH----HHCCCcEEEEEcCCCcCCCCHHHHHHHHHhcC--CCEEecccc-CCHHHHHHHHH-cCCCEEEe
Confidence 345676665443 3333 5544 55567789999999999988 999888774 56888887765 55788887
Q ss_pred ccCccccHHHHHHHHHHHHHcCCcEEecC
Q 013317 353 KVNQIGSVTESIEAVKMAKRAGWGVMASH 381 (445)
Q Consensus 353 k~~k~GGit~a~~i~~~A~~~g~~~~~~~ 381 (445)
-+.-.+ -....+..+.|+..|+.+.+--
T Consensus 131 I~~~L~-~~~l~~l~~~a~~lGle~LVEV 158 (247)
T PRK13957 131 IVRILT-PSQIKSFLKHASSLGMDVLVEV 158 (247)
T ss_pred EHhhCC-HHHHHHHHHHHHHcCCceEEEE
Confidence 776654 3578889999999999987655
No 140
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=54.22 E-value=1.2e+02 Score=30.96 Aligned_cols=93 Identities=15% Similarity=0.218 Sum_probs=56.4
Q ss_pred cCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccC----ccccHHHHHHHHHHHHHc--CCcEEec
Q 013317 307 DDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN----QIGSVTESIEAVKMAKRA--GWGVMAS 380 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~----k~GGit~a~~i~~~A~~~--g~~~~~~ 380 (445)
-+|+..++|++.++ +||+.-+. .+.++++.+++.+ +|+|.+.-. .-+++..+.-+.++++.. .+++++.
T Consensus 240 ~tW~~i~~lr~~~~--~pvivKgV--~~~~dA~~a~~~G-~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~d 314 (383)
T cd03332 240 LTWEDLAFLREWTD--LPIVLKGI--LHPDDARRAVEAG-VDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFD 314 (383)
T ss_pred CCHHHHHHHHHhcC--CCEEEecC--CCHHHHHHHHHCC-CCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEe
Confidence 47889999999998 99977775 4589999988765 677766522 012333444444444444 3887666
Q ss_pred CCCCCChhHHHHHHHhhhcCCccccCC
Q 013317 381 HRSGETEDTFIADLSVGLATGQIKTGA 407 (445)
Q Consensus 381 ~~~~et~~~~~~~la~a~~~~~~~~G~ 407 (445)
.. ..++....-. +++|+..+..|-
T Consensus 315 GG-Ir~G~Dv~KA--LaLGA~~v~iGr 338 (383)
T cd03332 315 SG-VRTGADIMKA--LALGAKAVLIGR 338 (383)
T ss_pred CC-cCcHHHHHHH--HHcCCCEEEEcH
Confidence 63 2333333333 344566665554
No 141
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=53.87 E-value=2.2e+02 Score=27.78 Aligned_cols=124 Identities=20% Similarity=0.169 Sum_probs=73.9
Q ss_pred CCcChHHHHHHHHHhhhcCCeeEEECC-------CC--ccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCC
Q 013317 277 QKVSGDGLKNVYRSFISDHPIVSIEDP-------FD--QDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTC 347 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~~iEdP-------~~--~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~ 347 (445)
..++.++-+++ .+.+.+.++..||=- +| .+..+..+.|.+... +.+.+ + +.+..++++.++.+ .
T Consensus 21 ~~~s~e~k~~i-a~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~--~~~~~--l-~~~~~~ie~A~~~g-~ 93 (287)
T PRK05692 21 RFIPTADKIAL-IDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPG--VTYAA--L-TPNLKGLEAALAAG-A 93 (287)
T ss_pred CCcCHHHHHHH-HHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCC--CeEEE--E-ecCHHHHHHHHHcC-C
Confidence 45788888886 456788999999942 33 344566666654322 44432 2 34689998888764 4
Q ss_pred CEEEeccCcc---------c----cHHHHHHHHHHHHHcCCcEE------ecCC-CCCChhHH---HHHHHhhhcCCccc
Q 013317 348 NALLLKVNQI---------G----SVTESIEAVKMAKRAGWGVM------ASHR-SGETEDTF---IADLSVGLATGQIK 404 (445)
Q Consensus 348 d~v~ik~~k~---------G----Git~a~~i~~~A~~~g~~~~------~~~~-~~et~~~~---~~~la~a~~~~~~~ 404 (445)
|.+.+=++-. - -+..+.+++++|+++|+.+. .++. .+.+.... ++.-+...++..+.
T Consensus 94 ~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~ 173 (287)
T PRK05692 94 DEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEIS 173 (287)
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 5555443211 1 23457789999999999863 2321 11233333 34445566777776
Q ss_pred cCC
Q 013317 405 TGA 407 (445)
Q Consensus 405 ~G~ 407 (445)
+-+
T Consensus 174 l~D 176 (287)
T PRK05692 174 LGD 176 (287)
T ss_pred ecc
Confidence 544
No 142
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=53.66 E-value=1.4e+02 Score=29.81 Aligned_cols=67 Identities=9% Similarity=0.146 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhhcCCeeEEE--------CCCC--------ccCHHHHHHHHHHh-CCceEEEeccccccCHHHHHHHHhc
Q 013317 282 DGLKNVYRSFISDHPIVSIE--------DPFD--------QDDWEHYAELTGKI-GRHVQIVGDDLLVTNPKRVEKAIKE 344 (445)
Q Consensus 282 ~~~i~~~~~~~~~~~i~~iE--------dP~~--------~~D~~~~~~L~~~~-~~~~pI~gde~~~~~~~~~~~~i~~ 344 (445)
++++++ .+.+++.++.+|. |-+. +-|++..+++++.+ + +||+|.-- +.+++++.+.++
T Consensus 141 ~~~~~~-~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~--ipVi~NGd-I~s~~da~~~l~- 215 (318)
T TIGR00742 141 EFLCDF-VEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPH--LTIEINGG-IKNSEQIKQHLS- 215 (318)
T ss_pred HHHHHH-HHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCC--CcEEEECC-cCCHHHHHHHHh-
Confidence 455665 4456777766653 2221 22677777888877 5 88855443 467999999885
Q ss_pred CCCCEEEecc
Q 013317 345 KTCNALLLKV 354 (445)
Q Consensus 345 ~a~d~v~ik~ 354 (445)
.+|.|+|==
T Consensus 216 -g~dgVMigR 224 (318)
T TIGR00742 216 -HVDGVMVGR 224 (318)
T ss_pred -CCCEEEECH
Confidence 588887643
No 143
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=53.61 E-value=3e+02 Score=29.21 Aligned_cols=127 Identities=15% Similarity=0.132 Sum_probs=78.8
Q ss_pred CCcChHHHHHHHHHhhhcCCeeEEECCCC---ccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcC---CCCEE
Q 013317 277 QKVSGDGLKNVYRSFISDHPIVSIEDPFD---QDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEK---TCNAL 350 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~~iEdP~~---~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~---a~d~v 350 (445)
..++.++-+++ .+.|++.++..||=-+| +.|++..+++...... ..|++= ...+..++.+.++.. ..+.|
T Consensus 18 ~~~s~e~K~~i-a~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~~~~-~~i~al--~r~~~~did~a~~al~~~~~~~v 93 (494)
T TIGR00973 18 ASLTVEEKLQI-ALALERLGVDIIEAGFPVSSPGDFEAVQRIARTVKN-PRVCGL--ARCVEKDIDAAAEALKPAEKFRI 93 (494)
T ss_pred CCcCHHHHHHH-HHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHhCCC-CEEEEE--cCCCHHhHHHHHHhccccCCCEE
Confidence 35788998887 45689999999995443 5677888888765432 333321 122478888776642 23444
Q ss_pred EeccC-------------ccccHHHHHHHHHHHHHcCCcEEecCCCC-CChhHHHH---HHHhhhcCCccccCC
Q 013317 351 LLKVN-------------QIGSVTESIEAVKMAKRAGWGVMASHRSG-ETEDTFIA---DLSVGLATGQIKTGA 407 (445)
Q Consensus 351 ~ik~~-------------k~GGit~a~~i~~~A~~~g~~~~~~~~~~-et~~~~~~---~la~a~~~~~~~~G~ 407 (445)
.+-.. +-.-+..+.+++++|+++|..+.++.... .+...++. ..+...++..+.+.+
T Consensus 94 ~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 167 (494)
T TIGR00973 94 HTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINIPD 167 (494)
T ss_pred EEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 43222 22335566788999999999998887432 33444433 444555777776544
No 144
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=53.56 E-value=2.6e+02 Score=28.48 Aligned_cols=40 Identities=10% Similarity=0.256 Sum_probs=31.4
Q ss_pred cCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEE
Q 013317 307 DDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALL 351 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ 351 (445)
.|+..+.++.+..+ +||++.. +.+.++++++++. .+|+|.
T Consensus 175 ~~p~~l~~~i~~~~--IPVI~G~--V~t~e~A~~~~~a-GaDgV~ 214 (369)
T TIGR01304 175 GEPLNLKEFIGELD--VPVIAGG--VNDYTTALHLMRT-GAAGVI 214 (369)
T ss_pred CCHHHHHHHHHHCC--CCEEEeC--CCCHHHHHHHHHc-CCCEEE
Confidence 46888899998887 9987643 3568999999984 588887
No 145
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=52.53 E-value=2.8e+02 Score=28.67 Aligned_cols=95 Identities=9% Similarity=0.142 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCc---------cc----cHHHHHHHHHHHHHcC
Q 013317 308 DWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ---------IG----SVTESIEAVKMAKRAG 374 (445)
Q Consensus 308 D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k---------~G----Git~a~~i~~~A~~~g 374 (445)
-.+-.++++++.+ +++|+..+. .++++.+.+++.+ +|+|.+-..- .| .++....+.++++..+
T Consensus 181 ~~~~v~~ik~~~p-~~~vi~g~V--~T~e~a~~l~~aG-aD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~ 256 (404)
T PRK06843 181 IIELVKKIKTKYP-NLDLIAGNI--VTKEAALDLISVG-ADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTN 256 (404)
T ss_pred HHHHHHHHHhhCC-CCcEEEEec--CCHHHHHHHHHcC-CCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcC
Confidence 3456788888874 377755443 4699999998875 7887643211 12 4667777888888889
Q ss_pred CcEEecCCCCCChhHHHHHHHhhhcCCccccCCCC
Q 013317 375 WGVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 375 ~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
++++.......+. . +--|+++++..+..|.+.
T Consensus 257 vpVIAdGGI~~~~-D--i~KALalGA~aVmvGs~~ 288 (404)
T PRK06843 257 ICIIADGGIRFSG-D--VVKAIAAGADSVMIGNLF 288 (404)
T ss_pred CeEEEeCCCCCHH-H--HHHHHHcCCCEEEEccee
Confidence 9986555322222 2 222455678888887754
No 146
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=52.31 E-value=3.1e+02 Score=28.93 Aligned_cols=119 Identities=16% Similarity=0.260 Sum_probs=80.0
Q ss_pred CCCCcChHHHHHHHHHhhhcCCeeEEECCCC---ccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcC--C---
Q 013317 275 GSQKVSGDGLKNVYRSFISDHPIVSIEDPFD---QDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEK--T--- 346 (445)
Q Consensus 275 ~n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~---~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~--a--- 346 (445)
++..++++|.+++ .+.+.++++..||=-+| .+|++..+.+.+..+..+-|++=- ....+++++..|.. +
T Consensus 72 ~ga~~~~~qK~ei-ar~L~~~gvd~IEv~fP~aSe~~~~~~~~i~k~~g~~~~I~~l~--rc~~~di~~tvEAl~~aKr~ 148 (560)
T KOG2367|consen 72 PGAFLTTEQKLEI-ARQLAKLGVDIIEVGFPVASEQDFEDCKTIAKTLGYVPVICTLI--RCHMDDIERTVEALKYAKRP 148 (560)
T ss_pred CCCcCCcHHHHHH-HHHHHhcCcCEEEecCcccCcchHHHHHHHHHhCCCCceEEEee--ccchHHHHHHHHHhhccCcc
Confidence 3567889999987 56688899999997766 367888888887665444555542 23467777766632 2
Q ss_pred -CCEEE----------eccCccccHHHHHHHHHHHHHcC-CcEEecC-CCCCChhHHHHHHHh
Q 013317 347 -CNALL----------LKVNQIGSVTESIEAVKMAKRAG-WGVMASH-RSGETEDTFIADLSV 396 (445)
Q Consensus 347 -~d~v~----------ik~~k~GGit~a~~i~~~A~~~g-~~~~~~~-~~~et~~~~~~~la~ 396 (445)
++.+. .+-++--.|.-|.+..+++++.| +.+-.++ ..+.|+-.+++.+-=
T Consensus 149 ~Vh~~~aTSd~~rey~~~kskeevi~~Ave~ikfvkslg~~~ieFSpEd~~rse~~fl~eI~~ 211 (560)
T KOG2367|consen 149 RVHVFIATSDIHREYKLKKSKEEVIESAVEVIKFVKSLGKWDIEFSPEDFGRSELEFLLEILG 211 (560)
T ss_pred eEEEEecccHHHHHHHhcccHHHHHHHHHHHHHHHHhcccceEEECccccccCcHHHHHHHHH
Confidence 34433 33345566788888999999999 7776666 345666666665533
No 147
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=52.15 E-value=99 Score=30.60 Aligned_cols=108 Identities=13% Similarity=0.087 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHhcCCCcceEEEEecc--ccccccc------------cCcceeecccCCCCCCCCCcChHHHHHHHHHh
Q 013317 226 YEGFELLKTAIAKGGYIGKIVIGMDVA--ASEFYDR------------KDKTYDLNFKEENNDGSQKVSGDGLKNVYRSF 291 (445)
Q Consensus 226 ~~~l~~v~~ai~~~G~~~~i~l~vD~~--a~~~~~~------------~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~ 291 (445)
.-++.++|+++.+.|+..++.||-=.+ ++.||.+ ++.+|+.++. +..|+++-...-
T Consensus 165 DGrV~aIR~aLD~~G~~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~----------n~~eAlre~~~D 234 (320)
T cd04824 165 DGRVRAIKQALIQAGLGNKVSVMSYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPG----------ARGLALRAVERD 234 (320)
T ss_pred ccHHHHHHHHHHHCCCccCCeeeehHHHhhhhccchHHHHhcCCCCCCCccccCCCCc----------CHHHHHHHHHhh
Confidence 457889999999999843666663222 4556642 2457877643 345666553322
Q ss_pred hhc-CCeeEEECCCCccCHHHHHHHHHHh-CCceEEEeccccccCHHHHHHHHhcCCCC
Q 013317 292 ISD-HPIVSIEDPFDQDDWEHYAELTGKI-GRHVQIVGDDLLVTNPKRVEKAIKEKTCN 348 (445)
Q Consensus 292 ~~~-~~i~~iEdP~~~~D~~~~~~L~~~~-~~~~pI~gde~~~~~~~~~~~~i~~~a~d 348 (445)
+++ .++.++.=-++- ++-.+++++++ . +||++-..+ .-..-++...+.+..|
T Consensus 235 ~~EGAD~lMVKPal~Y--LDIi~~~k~~~~~--~PvaaYqVS-GEYaMikaAa~~G~iD 288 (320)
T cd04824 235 VSEGADMIMVKPGTPY--LDIVREAKDKHPD--LPLAVYHVS-GEYAMLHAAAEAGAFD 288 (320)
T ss_pred HHhCCCEEEEcCCchH--HHHHHHHHHhccC--CCEEEEEcc-HHHHHHHHHHHcCCCc
Confidence 333 567777644553 56688999999 6 999887653 2233445566666666
No 148
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=52.00 E-value=2e+02 Score=29.78 Aligned_cols=130 Identities=18% Similarity=0.217 Sum_probs=77.7
Q ss_pred CCCcChHHHHHHHHHhhhcCCeeEEECCCC---ccCHHHHHHHHHHhCC--ceEEEeccccccCHHHHHHHHhcCCCCEE
Q 013317 276 SQKVSGDGLKNVYRSFISDHPIVSIEDPFD---QDDWEHYAELTGKIGR--HVQIVGDDLLVTNPKRVEKAIKEKTCNAL 350 (445)
Q Consensus 276 n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~---~~D~~~~~~L~~~~~~--~~pI~gde~~~~~~~~~~~~i~~~a~d~v 350 (445)
+..+|.++-++. .+.|++.++.+||=-++ +.|++..+.+....+. .+.+.+-.. ....++..+++.+.--+-
T Consensus 18 g~~~s~e~Ki~I-a~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~ea~~~a~~~~i~ 94 (409)
T COG0119 18 GVSFSVEEKIRI-AKALDDLGVDYIEAGFPVASPGDFEFVRAIAEKAGLFICALIAALAR--AIKRDIEALLEAGVDRIH 94 (409)
T ss_pred CCcCCHHHHHHH-HHHHHHcCCCEEEEeCCcCChhhHHHHHHHHHhcCcccchhhhhhHH--hHHhhHHHHHhCCCCEEE
Confidence 446888998886 56689999999998776 4577777777754331 112222221 123356666654433322
Q ss_pred E------------eccCccccHHHHHHHHHHHHHcCCcEEecC-CCCCChhHHHHH---HHhhhcCCccccCCC
Q 013317 351 L------------LKVNQIGSVTESIEAVKMAKRAGWGVMASH-RSGETEDTFIAD---LSVGLATGQIKTGAP 408 (445)
Q Consensus 351 ~------------ik~~k~GGit~a~~i~~~A~~~g~~~~~~~-~~~et~~~~~~~---la~a~~~~~~~~G~~ 408 (445)
. ++.++.--+.-+.+.+.+|+.+|+.+..+. ....++..+++. .+...++..+.+++-
T Consensus 95 if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~DT 168 (409)
T COG0119 95 IFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINLPDT 168 (409)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEECCC
Confidence 1 233345566677788889999999887433 123555444443 344445777776653
No 149
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=51.25 E-value=77 Score=33.53 Aligned_cols=108 Identities=14% Similarity=0.230 Sum_probs=63.5
Q ss_pred CCeeEEECCC--CccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccC-------c------ccc
Q 013317 295 HPIVSIEDPF--DQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN-------Q------IGS 359 (445)
Q Consensus 295 ~~i~~iEdP~--~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~-------k------~GG 359 (445)
.++..+..+- ...-++..++|+++.+ ++||+.... .+.++++.+++.++ |+|.+=.+ + ...
T Consensus 241 vdvivvD~a~g~~~~vl~~i~~i~~~~p-~~~vi~g~v--~t~e~a~~l~~aGa-d~i~vg~g~gs~~~~r~~~~~g~p~ 316 (486)
T PRK05567 241 VDVLVVDTAHGHSEGVLDRVREIKAKYP-DVQIIAGNV--ATAEAARALIEAGA-DAVKVGIGPGSICTTRIVAGVGVPQ 316 (486)
T ss_pred CCEEEEECCCCcchhHHHHHHHHHhhCC-CCCEEEecc--CCHHHHHHHHHcCC-CEEEECCCCCccccceeecCCCcCH
Confidence 4455555442 2223456778888772 388755443 35899999988754 77754221 1 123
Q ss_pred HHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhcCCccccCCCC
Q 013317 360 VTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 360 it~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
++...++++.|+..+++++.... .-+... +--|+++|+..+..|.+.
T Consensus 317 ~~~~~~~~~~~~~~~~~viadGG-i~~~~d--i~kAla~GA~~v~~G~~~ 363 (486)
T PRK05567 317 ITAIADAAEAAKKYGIPVIADGG-IRYSGD--IAKALAAGASAVMLGSML 363 (486)
T ss_pred HHHHHHHHHHhccCCCeEEEcCC-CCCHHH--HHHHHHhCCCEEEECccc
Confidence 55666777777778999765442 222222 233455678888888743
No 150
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=51.04 E-value=2.7e+02 Score=27.89 Aligned_cols=126 Identities=10% Similarity=0.048 Sum_probs=79.4
Q ss_pred CCcChHHHHHHHHHhhhcCCeeEEEC--------------CCCccCHHHHHHHHHHhCCceEE--EeccccccCHHHHHH
Q 013317 277 QKVSGDGLKNVYRSFISDHPIVSIED--------------PFDQDDWEHYAELTGKIGRHVQI--VGDDLLVTNPKRVEK 340 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~~iEd--------------P~~~~D~~~~~~L~~~~~~~~pI--~gde~~~~~~~~~~~ 340 (445)
-.++.++.++++ +.+++.++..||= |....|++..+++.+..+ +..+ +..=. ..+.++++.
T Consensus 19 ~~f~~~~~~~ia-~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~-~~~~~~ll~pg-~~~~~dl~~ 95 (333)
T TIGR03217 19 HQFTIEQVRAIA-AALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK-RAKVAVLLLPG-IGTVHDLKA 95 (333)
T ss_pred CcCCHHHHHHHH-HHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC-CCEEEEEeccC-ccCHHHHHH
Confidence 457888888874 5678899999998 444567888888887654 2333 22211 124788888
Q ss_pred HHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCC-CCCChhHH---HHHHHhhhcCCccccCC
Q 013317 341 AIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHR-SGETEDTF---IADLSVGLATGQIKTGA 407 (445)
Q Consensus 341 ~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~-~~et~~~~---~~~la~a~~~~~~~~G~ 407 (445)
..+.+ +|.+.+-... .=.-.+.+.++++++.|..+.+.-+ +....... .+..+...++..+.+-+
T Consensus 96 a~~~g-vd~iri~~~~-~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~D 164 (333)
T TIGR03217 96 AYDAG-ARTVRVATHC-TEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVD 164 (333)
T ss_pred HHHCC-CCEEEEEecc-chHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEcc
Confidence 77664 7888865432 2245678999999999988743332 22233333 33444555777666444
No 151
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=50.97 E-value=1.7e+02 Score=27.25 Aligned_cols=43 Identities=9% Similarity=0.087 Sum_probs=31.1
Q ss_pred cCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEe
Q 013317 307 DDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
-|++.++++++.++ +||++--- +++++++.+.+....+|.+.+
T Consensus 184 ~~~~~~~~i~~~~~--ipvia~GG-i~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 184 YDLELIKTVSDAVS--IPVIALGG-AGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred CCHHHHHHHHhhCC--CCEEEECC-CCCHHHHHHHHHHcCCCEEEE
Confidence 36888999999887 77733322 357999999666667777765
No 152
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.17 E-value=1.4e+02 Score=29.30 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHc--CCcEEecCCCCCC
Q 013317 309 WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRA--GWGVMASHRSGET 386 (445)
Q Consensus 309 ~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~--g~~~~~~~~~~et 386 (445)
.+..+++++..+....| +=| +.|.+++.++++.+ +|++++|.. ++.+..+++.+.+.. .+++..+ |..
T Consensus 183 ~~av~~~r~~~~~~~~I-~VE--v~tleea~eA~~~G-aD~I~LDn~---~~e~l~~av~~~~~~~~~i~leAs---GGI 252 (288)
T PRK07428 183 GEAITRIRQRIPYPLTI-EVE--TETLEQVQEALEYG-ADIIMLDNM---PVDLMQQAVQLIRQQNPRVKIEAS---GNI 252 (288)
T ss_pred HHHHHHHHHhCCCCCEE-EEE--CCCHHHHHHHHHcC-CCEEEECCC---CHHHHHHHHHHHHhcCCCeEEEEE---CCC
Confidence 35677777776522333 333 45789999888644 699999954 456666666666543 3443333 333
Q ss_pred hhHHHHHHHhhhcCCccccCCCC
Q 013317 387 EDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 387 ~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
....+..+| ++++..+-.|.+.
T Consensus 253 t~~ni~~ya-~tGvD~Isvgsl~ 274 (288)
T PRK07428 253 TLETIRAVA-ETGVDYISSSAPI 274 (288)
T ss_pred CHHHHHHHH-HcCCCEEEEchhh
Confidence 444455554 4577777776653
No 153
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=49.46 E-value=1.2e+02 Score=29.84 Aligned_cols=107 Identities=14% Similarity=0.188 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHhcCCCcceEEEEecc--ccccccc------------cCcceeecccCCCCCCCCCcChHHHHHHHHHh
Q 013317 226 YEGFELLKTAIAKGGYIGKIVIGMDVA--ASEFYDR------------KDKTYDLNFKEENNDGSQKVSGDGLKNVYRSF 291 (445)
Q Consensus 226 ~~~l~~v~~ai~~~G~~~~i~l~vD~~--a~~~~~~------------~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~ 291 (445)
.-++.+||+++.+.|+. ++.||-=.+ ++.||.+ ++..|+.+.. +..|+++-...-
T Consensus 174 DGrV~aIR~aLd~ag~~-~v~IMsYsaKyASafYGPFRdAa~Sap~~gdrktYQmDpa----------N~~EAlrE~~lD 242 (330)
T COG0113 174 DGRVGAIREALDEAGFI-DVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPA----------NRREALREIELD 242 (330)
T ss_pred cchHHHHHHHHHHcCCC-cceeeehhHHHhhhccccHHHHhhcccccCCcceeccCCc----------CHHHHHHHHHhh
Confidence 44688999999999884 667764332 4455532 2456777632 356776654332
Q ss_pred hhc-CCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCC
Q 013317 292 ISD-HPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCN 348 (445)
Q Consensus 292 ~~~-~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d 348 (445)
+++ .++.++---++- ++-.++++..++ +|+++-..+ ....-++...++++.|
T Consensus 243 ~~EGAD~lMVKPal~Y--LDIi~~vk~~~~--lP~~AYqVS-GEYaMikAAa~nGwid 295 (330)
T COG0113 243 IEEGADILMVKPALPY--LDIIRRVKEEFN--LPVAAYQVS-GEYAMIKAAAQNGWID 295 (330)
T ss_pred HhcCCcEEEEcCCchH--HHHHHHHHHhcC--CCeEEEecc-hHHHHHHHHHHcCCcc
Confidence 333 456666544543 466788999998 999888653 2233444555555554
No 154
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=49.25 E-value=1.1e+02 Score=30.33 Aligned_cols=107 Identities=14% Similarity=0.192 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHhcCCCcceEEEEecc--ccccccc------------cCcceeecccCCCCCCCCCcChHHHHHHHHHh
Q 013317 226 YEGFELLKTAIAKGGYIGKIVIGMDVA--ASEFYDR------------KDKTYDLNFKEENNDGSQKVSGDGLKNVYRSF 291 (445)
Q Consensus 226 ~~~l~~v~~ai~~~G~~~~i~l~vD~~--a~~~~~~------------~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~ 291 (445)
.-++.+||+++.+.|+. ++.||-=.+ +|.||.+ ++..|+.++. +..|+++....-
T Consensus 161 DGrV~aIR~aLd~~g~~-~v~ImsYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpa----------n~~eAlre~~~D 229 (314)
T cd00384 161 DGRVAAIREALDEAGFS-DVPIMSYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPA----------NRREALREVELD 229 (314)
T ss_pred ccHHHHHHHHHHHCCCC-CCceeecHHHhhhhccchHHHHhhcCCCCCCccccCCCCC----------CHHHHHHHHHhh
Confidence 45788999999999984 566663322 4555542 3457877643 345666554333
Q ss_pred hhc-CCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCC
Q 013317 292 ISD-HPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCN 348 (445)
Q Consensus 292 ~~~-~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d 348 (445)
+++ .++.++-=-++- ++-.+++++++. +|+++-..+ .-..-++...+++..|
T Consensus 230 ~~EGAD~lMVKPal~Y--LDIi~~~k~~~~--~PvaaYqVS-GEYaMikaAa~~G~id 282 (314)
T cd00384 230 IEEGADILMVKPALAY--LDIIRDVRERFD--LPVAAYNVS-GEYAMIKAAAKNGWID 282 (314)
T ss_pred HHhCCCEEEEcCCchH--HHHHHHHHHhcC--CCEEEEEcc-HHHHHHHHHHHcCCcc
Confidence 333 567777644553 466788999987 999887653 1123344455555544
No 155
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=49.22 E-value=36 Score=32.48 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccC-ccccHHHHHHHHHHHHHcCCcE
Q 013317 308 DWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN-QIGSVTESIEAVKMAKRAGWGV 377 (445)
Q Consensus 308 D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~-k~GGit~a~~i~~~A~~~g~~~ 377 (445)
|++.++++++.++ +||++.-- +++++++.++++...+|.+.+--. ..|. ....++.+.+++.|+.+
T Consensus 185 d~~~i~~~~~~~~--ipvia~GG-v~s~~d~~~~~~~~G~~gvivg~al~~~~-~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 185 DLELTRAVSDAVN--VPVIASGG-AGNLEHFVEAFTEGGADAALAASIFHFGE-ITIGELKAYLAEQGIPV 251 (253)
T ss_pred CHHHHHHHHhhCC--CCEEEECC-CCCHHHHHHHHHhCCccEEeEhHHHHcCC-CCHHHHHHHHHHCCCcc
Confidence 7888999999887 77622222 357999999988766777776432 2233 34455666677788764
No 156
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=48.53 E-value=2.3e+02 Score=30.54 Aligned_cols=64 Identities=9% Similarity=0.165 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEec-c--CccccHHHHHHHHHHHHHcCCcE
Q 013317 308 DWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK-V--NQIGSVTESIEAVKMAKRAGWGV 377 (445)
Q Consensus 308 D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik-~--~k~GGit~a~~i~~~A~~~g~~~ 377 (445)
|++-++++++.++ +||++.-- +.+++++.++++...+|++..- + -+--++.+.+ +..+..|+.+
T Consensus 470 d~~l~~~v~~~~~--ipviasGG-~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k---~~l~~~gi~v 536 (538)
T PLN02617 470 DIELVKLVSDAVT--IPVIASSG-AGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVK---EHLLEEGIET 536 (538)
T ss_pred CHHHHHHHHhhCC--CCEEEECC-CCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHH---HHHHHCCCcc
Confidence 7889999999988 88754433 4679999999987666665542 2 1222344444 4555667664
No 157
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=48.46 E-value=1.4e+02 Score=29.75 Aligned_cols=107 Identities=13% Similarity=0.169 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHhcCCCcceEEEEecc--ccccccc------------cCcceeecccCCCCCCCCCcChHHHHHHHHHh
Q 013317 226 YEGFELLKTAIAKGGYIGKIVIGMDVA--ASEFYDR------------KDKTYDLNFKEENNDGSQKVSGDGLKNVYRSF 291 (445)
Q Consensus 226 ~~~l~~v~~ai~~~G~~~~i~l~vD~~--a~~~~~~------------~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~ 291 (445)
.-++.++|+++.+.|+. ++.||-=.+ +|.||.+ ++.+|+.++. +..|+++....-
T Consensus 171 DGrV~aIR~aLd~~g~~-~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDrktYQmdp~----------N~~EAlre~~~D 239 (324)
T PF00490_consen 171 DGRVGAIREALDEAGFS-DVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPA----------NRREALREAELD 239 (324)
T ss_dssp TTHHHHHHHHHHHTTCT-TSEEEEEEEEB-SSTGHHHHHHHT-HHSSSTSTTTSB-TT-----------HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCC-CccEEechHHHhhhhhHhHHHHhcCCccccCcccccCCCc----------cHHHHHHHhhhh
Confidence 45788999999999984 666663222 4566642 3467877643 456776654333
Q ss_pred hhc-CCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCC
Q 013317 292 ISD-HPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCN 348 (445)
Q Consensus 292 ~~~-~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d 348 (445)
+++ .++.++.=-++- ++-.+++++++. +|+++-..+ .-..-++.+.+.+..|
T Consensus 240 ~~EGAD~lMVKPal~Y--LDIi~~~k~~~~--~P~~aYqVS-GEYaMikaAa~~G~~d 292 (324)
T PF00490_consen 240 IEEGADILMVKPALPY--LDIIRRVKERFD--LPVAAYQVS-GEYAMIKAAAQNGWID 292 (324)
T ss_dssp HHTT-SEEEEESSGGG--HHHHHHHHHHCT--S-EEEEETH-HHHHHHHHHHHTTSS-
T ss_pred HhhCCCEEEeecchhH--HHHHHHHHHhcC--CCEEEEEeh-HHHHHHHHHHHCCCcc
Confidence 333 567777744553 567899999998 999888653 2233445555566555
No 158
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=47.86 E-value=92 Score=30.91 Aligned_cols=130 Identities=16% Similarity=0.187 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHhcCCCcceEEEEecc--ccccccc------------cCcceeecccCCCCCCCCCcChHHHHHHHHHh
Q 013317 226 YEGFELLKTAIAKGGYIGKIVIGMDVA--ASEFYDR------------KDKTYDLNFKEENNDGSQKVSGDGLKNVYRSF 291 (445)
Q Consensus 226 ~~~l~~v~~ai~~~G~~~~i~l~vD~~--a~~~~~~------------~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~ 291 (445)
.-++.++|+++.+.|++ ++.||-=.+ +|.||.+ ++.+|+.++. +..|+++-...-
T Consensus 169 DGrV~aIR~aLd~~g~~-~v~ImSYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~----------n~~eAlre~~~D 237 (323)
T PRK09283 169 DGRVGAIREALDEAGFT-DVPIMSYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDPA----------NRREALREVALD 237 (323)
T ss_pred ccHHHHHHHHHHHCCCC-CCceeecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCCC----------CHHHHHHHHHhh
Confidence 45788999999999984 566663222 3455532 3457887643 355666554333
Q ss_pred hhc-CCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHH
Q 013317 292 ISD-HPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMA 370 (445)
Q Consensus 292 ~~~-~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A 370 (445)
+++ .++.++.=-++- ++-.+++++++. +||++-..+ .-..-++.+.+.++.|- .+ .+.|+ ..-.
T Consensus 238 ~~EGAD~lMVKPal~Y--LDIi~~~k~~~~--~PvaaYqVS-GEYaMikaAa~~G~~D~-----~~--~~~Es---l~~~ 302 (323)
T PRK09283 238 IEEGADMVMVKPALPY--LDIIRRVKDEFN--LPVAAYQVS-GEYAMIKAAAQNGWIDE-----ER--VVLES---LLSI 302 (323)
T ss_pred HHhCCCEEEEcCCchH--HHHHHHHHhcCC--CCEEEEEcc-HHHHHHHHHHHcCCCCH-----HH--HHHHH---HHHH
Confidence 333 557777644553 466788999987 999887653 11234445566666553 11 23333 3344
Q ss_pred HHcCCcEEecC
Q 013317 371 KRAGWGVMASH 381 (445)
Q Consensus 371 ~~~g~~~~~~~ 381 (445)
+.+|-.+++.-
T Consensus 303 kRAGAd~IiTY 313 (323)
T PRK09283 303 KRAGADGILTY 313 (323)
T ss_pred HhcCCCEEEec
Confidence 45666655443
No 159
>PRK08185 hypothetical protein; Provisional
Probab=47.44 E-value=2.1e+02 Score=28.01 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=46.3
Q ss_pred cccCHHHHHHHHhcCCCCEEEeccCccccHHH--------HHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhcCCc
Q 013317 331 LVTNPKRVEKAIKEKTCNALLLKVNQIGSVTE--------SIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLATGQ 402 (445)
Q Consensus 331 ~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~--------a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~ 402 (445)
.+|+++++.++++.-.+|++-+-++.++|+.+ .-.+.++++..++++++...++ +.+.- ..-|+..|..-
T Consensus 147 ~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg-~~~e~-~~~ai~~GI~K 224 (283)
T PRK08185 147 IYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSA-NPDAE-IAESVQLGVGK 224 (283)
T ss_pred cCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCC-CCHHH-HHHHHHCCCeE
Confidence 36899999999998789999997777777642 3345556666799975444433 33332 22234444444
Q ss_pred ccc
Q 013317 403 IKT 405 (445)
Q Consensus 403 ~~~ 405 (445)
++.
T Consensus 225 iNi 227 (283)
T PRK08185 225 INI 227 (283)
T ss_pred EEe
Confidence 444
No 160
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=46.78 E-value=2e+02 Score=29.20 Aligned_cols=107 Identities=10% Similarity=0.191 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCcccc------HHHHHHHHHHHHHcCCcEEecC
Q 013317 308 DWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS------VTESIEAVKMAKRAGWGVMASH 381 (445)
Q Consensus 308 D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GG------it~a~~i~~~A~~~g~~~~~~~ 381 (445)
.++..++|++..+ .||+.-+. .++++.+++++.+ +|+|.+- ..|| .....-+.++++..++++++..
T Consensus 224 ~w~~i~~ir~~~~--~pviiKgV--~~~eda~~a~~~G-~d~I~VS--nhGGrqld~~~~~~~~L~ei~~~~~~~vi~dG 296 (361)
T cd04736 224 NWQDLRWLRDLWP--HKLLVKGI--VTAEDAKRCIELG-ADGVILS--NHGGRQLDDAIAPIEALAEIVAATYKPVLIDS 296 (361)
T ss_pred CHHHHHHHHHhCC--CCEEEecC--CCHHHHHHHHHCC-cCEEEEC--CCCcCCCcCCccHHHHHHHHHHHhCCeEEEeC
Confidence 5778999999998 78766664 4699999998865 6666543 2232 2234444555666688877665
Q ss_pred CCCCChhHHHHHHHhhhcCCccccCCC-------CCchhHHHHHHHHHHH
Q 013317 382 RSGETEDTFIADLSVGLATGQIKTGAP-------CRSERLAKYNQLLRIE 424 (445)
Q Consensus 382 ~~~et~~~~~~~la~a~~~~~~~~G~~-------~~~er~~k~n~ll~i~ 424 (445)
. ..++....- |+++|+..+..|.| .+.+.+.++=++|+-|
T Consensus 297 G-Ir~g~Dv~K--ALaLGA~aV~iGr~~l~~la~~G~~gv~~~l~~l~~e 343 (361)
T cd04736 297 G-IRRGSDIVK--ALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEE 343 (361)
T ss_pred C-CCCHHHHHH--HHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3 233222222 44556766666653 2555666665555544
No 161
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=46.63 E-value=1.7e+02 Score=29.71 Aligned_cols=94 Identities=11% Similarity=0.152 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCc---------cc-c---HHHHHHHHHHHHHc-
Q 013317 308 DWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ---------IG-S---VTESIEAVKMAKRA- 373 (445)
Q Consensus 308 D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k---------~G-G---it~a~~i~~~A~~~- 373 (445)
++..+.++.++.+ +||++... .+.++++++++ -.+|+|.+-..- .| | ++...+.++.++.+
T Consensus 175 ~~~~i~~~ik~~~--ipVIaG~V--~t~e~A~~l~~-aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l 249 (368)
T PRK08649 175 EPLNLKEFIYELD--VPVIVGGC--VTYTTALHLMR-TGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYL 249 (368)
T ss_pred CHHHHHHHHHHCC--CCEEEeCC--CCHHHHHHHHH-cCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhh
Confidence 6788888888877 99876443 46899999997 678888664221 11 1 22233444333433
Q ss_pred ------CCcEEecCCCCCChhHHHHHHHhhhcCCccccCCCC
Q 013317 374 ------GWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 374 ------g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
+++++..... -+.-.... |+++++..+..|.+.
T Consensus 250 ~~~~~~~vpVIAdGGI-~~~~diak--AlalGAd~Vm~Gs~f 288 (368)
T PRK08649 250 DETGGRYVHVIADGGI-GTSGDIAK--AIACGADAVMLGSPL 288 (368)
T ss_pred hhhcCCCCeEEEeCCC-CCHHHHHH--HHHcCCCeecccchh
Confidence 6887655532 22222223 344578888887753
No 162
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=46.63 E-value=88 Score=32.77 Aligned_cols=93 Identities=14% Similarity=0.190 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhhc-CCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccC-----
Q 013317 282 DGLKNVYRSFISD-HPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN----- 355 (445)
Q Consensus 282 ~~~i~~~~~~~~~-~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~----- 355 (445)
.++++.+.+++-+ -+..++|+|.-..-+..+..+..+. ++|--|+. --+++.+++.++.....++-+-++
T Consensus 165 q~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~---~~vp~d~~-G~~~e~le~~~~~~~~k~~y~~P~~qNPt 240 (459)
T COG1167 165 QQALDLLLRLLLDPGDTVLVEDPTYPGALQALEALGARV---IPVPVDED-GIDPEALEEALAQWKPKAVYVTPTFQNPT 240 (459)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcE---EecCCCCC-CCCHHHHHHHHhhcCCcEEEECCCCCCCC
Confidence 4677777777665 4588999998754333333333232 45534443 236899999988776666666553
Q ss_pred -ccccHHHHHHHHHHHHHcCCcEE
Q 013317 356 -QIGSVTESIEAVKMAKRAGWGVM 378 (445)
Q Consensus 356 -k~GGit~a~~i~~~A~~~g~~~~ 378 (445)
-+=....-++++++|+++++.++
T Consensus 241 G~tms~~rR~~Ll~lA~~~~~~II 264 (459)
T COG1167 241 GVTMSLERRKALLALAEKYDVLII 264 (459)
T ss_pred CCccCHHHHHHHHHHHHHcCCeEE
Confidence 23345666889999999999974
No 163
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=46.52 E-value=1.3e+02 Score=29.76 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHhcCCCcceEEEEecc--ccccccc------------cCcceeecccCCCCCCCCCcChHHHHHHHHHh
Q 013317 226 YEGFELLKTAIAKGGYIGKIVIGMDVA--ASEFYDR------------KDKTYDLNFKEENNDGSQKVSGDGLKNVYRSF 291 (445)
Q Consensus 226 ~~~l~~v~~ai~~~G~~~~i~l~vD~~--a~~~~~~------------~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~ 291 (445)
.-++.++|+++.+.|+. ++.||-=.+ +|.||.+ ++..|+.++. +..++++....-
T Consensus 166 DGrV~aIR~aLd~~g~~-~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~----------n~~eAlre~~~D 234 (320)
T cd04823 166 DGRIGAIREALDAEGFT-NVSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPA----------NSREALREVALD 234 (320)
T ss_pred hhHHHHHHHHHHHCCCC-CCceeechHHhhhhccchhHHHhcCCCCCCCccccCCCCC----------CHHHHHHHHHhh
Confidence 45788999999999984 566663222 4556642 2457877643 345666543333
Q ss_pred hhc-CCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCC
Q 013317 292 ISD-HPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCN 348 (445)
Q Consensus 292 ~~~-~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d 348 (445)
+++ .++.++.=-++- ++-.+.+++++. +||++-..+ .-..-++...+.++.|
T Consensus 235 i~EGAD~lMVKPal~Y--LDIi~~~k~~~~--lPvaaYqVS-GEYaMikaAa~~G~~d 287 (320)
T cd04823 235 IAEGADMVMVKPGMPY--LDIIRRVKDEFG--VPTFAYQVS-GEYAMLKAAAQNGWLD 287 (320)
T ss_pred HHhCCCEEEEcCCchH--HHHHHHHHHhcC--CCEEEEEcc-HHHHHHHHHHHcCCCc
Confidence 333 557777644553 566788999987 999887653 1123344555555554
No 164
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=46.47 E-value=2.2e+02 Score=29.05 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=55.5
Q ss_pred cCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccC---ccc-cHHHHHHHHHHHHHc--CCcEEec
Q 013317 307 DDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN---QIG-SVTESIEAVKMAKRA--GWGVMAS 380 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~---k~G-Git~a~~i~~~A~~~--g~~~~~~ 380 (445)
-+|+.+++|++..+ +||+.-+. .++++++++++.+ +|+|.+.-. +.. +++.+.-+.+++++. .+++++.
T Consensus 211 ~tW~di~wlr~~~~--~PiivKgV--~~~~dA~~a~~~G-vd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~d 285 (367)
T PLN02493 211 LSWKDVQWLQTITK--LPILVKGV--LTGEDARIAIQAG-AAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLD 285 (367)
T ss_pred CCHHHHHHHHhccC--CCEEeecC--CCHHHHHHHHHcC-CCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEe
Confidence 37888999999988 99988886 3589999998876 566655432 111 222333333344443 3777666
Q ss_pred CCCCCChhHHHHHHHhhhcCCccccCC
Q 013317 381 HRSGETEDTFIADLSVGLATGQIKTGA 407 (445)
Q Consensus 381 ~~~~et~~~~~~~la~a~~~~~~~~G~ 407 (445)
+. ..++...+-. +++|+..+-.|.
T Consensus 286 GG-Ir~G~Dv~KA--LALGA~aV~iGr 309 (367)
T PLN02493 286 GG-VRRGTDVFKA--LALGASGIFIGR 309 (367)
T ss_pred CC-cCcHHHHHHH--HHcCCCEEEEcH
Confidence 53 3333333333 444566666555
No 165
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=46.26 E-value=40 Score=33.62 Aligned_cols=47 Identities=9% Similarity=0.331 Sum_probs=40.2
Q ss_pred cCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccC
Q 013317 307 DDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN 355 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~ 355 (445)
-|++..++|++.++. +||++.-. +.++++.++.++...+|.|++-=.
T Consensus 184 ad~~~I~~vk~~~~~-ipvi~NGd-I~s~~~a~~~l~~tg~DgVMigRg 230 (323)
T COG0042 184 ADWDYIKELKEAVPS-IPVIANGD-IKSLEDAKEMLEYTGADGVMIGRG 230 (323)
T ss_pred cCHHHHHHHHHhCCC-CeEEeCCC-cCCHHHHHHHHHhhCCCEEEEcHH
Confidence 589999999999875 89877776 577999999999999999997543
No 166
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=46.23 E-value=39 Score=26.68 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=19.6
Q ss_pred cceeEEEEEEEecCCCCCeEEEEEEeCCC
Q 013317 2 VTINAVKARQIFDSRGNPTVEVDVSLSDG 30 (445)
Q Consensus 2 ~~I~~v~~~~i~~~~g~~~v~V~V~td~G 30 (445)
|+||+|+.|+|- +.|+---.|.|+.|+-
T Consensus 1 m~iTdVRirkv~-~dgrmkA~vsvT~D~e 28 (95)
T COG2088 1 MEITDVRIRKVD-TDGRMKAYVSVTLDNE 28 (95)
T ss_pred CcceeEEEEEec-CCCcEEEEEEEEecce
Confidence 689999999994 4465455666665554
No 167
>PLN02979 glycolate oxidase
Probab=45.51 E-value=2.9e+02 Score=28.17 Aligned_cols=94 Identities=11% Similarity=0.096 Sum_probs=56.6
Q ss_pred ccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCc---c-ccHHHHHHHHHHHHHc--CCcEEe
Q 013317 306 QDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ---I-GSVTESIEAVKMAKRA--GWGVMA 379 (445)
Q Consensus 306 ~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k---~-GGit~a~~i~~~A~~~--g~~~~~ 379 (445)
.-+|+.+++|++..+ +||+.-+. .+.++++++++.+ +|+|.+.-.- . ++++.+.-+.+++++. .+++++
T Consensus 209 ~ltW~dl~wlr~~~~--~PvivKgV--~~~~dA~~a~~~G-vd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~ 283 (366)
T PLN02979 209 TLSWKDVQWLQTITK--LPILVKGV--LTGEDARIAIQAG-AAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFL 283 (366)
T ss_pred CCCHHHHHHHHhccC--CCEEeecC--CCHHHHHHHHhcC-CCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEE
Confidence 347888999999988 99988886 3589999988776 6776655321 1 1222333333344443 377766
Q ss_pred cCCCCCChhHHHHHHHhhhcCCccccCC
Q 013317 380 SHRSGETEDTFIADLSVGLATGQIKTGA 407 (445)
Q Consensus 380 ~~~~~et~~~~~~~la~a~~~~~~~~G~ 407 (445)
++. ..++...+- |+++|+..+-.|.
T Consensus 284 dGG-Ir~G~Di~K--ALALGAdaV~iGr 308 (366)
T PLN02979 284 DGG-VRRGTDVFK--ALALGASGIFIGR 308 (366)
T ss_pred eCC-cCcHHHHHH--HHHcCCCEEEEcH
Confidence 553 233333223 4455676666655
No 168
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=44.83 E-value=2.9e+02 Score=26.54 Aligned_cols=127 Identities=11% Similarity=0.071 Sum_probs=75.7
Q ss_pred CCCcChHHHHHHHHHhhhcCCeeEEECCCCc---cCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEe
Q 013317 276 SQKVSGDGLKNVYRSFISDHPIVSIEDPFDQ---DDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 276 n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~---~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
+-.++.++.++++ +.+.+.++..||=-.|. ++.+..+.+.+.. .+..+.+= ...+.++++.+.+. .++.+.+
T Consensus 16 ~~~~s~~~k~~i~-~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~~~~-~~~~v~~~--~r~~~~di~~a~~~-g~~~i~i 90 (262)
T cd07948 16 NAFFDTEDKIEIA-KALDAFGVDYIELTSPAASPQSRADCEAIAKLG-LKAKILTH--IRCHMDDARIAVET-GVDGVDL 90 (262)
T ss_pred CCCCCHHHHHHHH-HHHHHcCCCEEEEECCCCCHHHHHHHHHHHhCC-CCCcEEEE--ecCCHHHHHHHHHc-CcCEEEE
Confidence 3457889998875 56788999999984433 3444555554322 12233221 23468899998876 4566666
Q ss_pred ccC---------ccccHHH----HHHHHHHHHHcCCcEEecCCC-CCChhH---HHHHHHhhhcCCccccCC
Q 013317 353 KVN---------QIGSVTE----SIEAVKMAKRAGWGVMASHRS-GETEDT---FIADLSVGLATGQIKTGA 407 (445)
Q Consensus 353 k~~---------k~GGit~----a~~i~~~A~~~g~~~~~~~~~-~et~~~---~~~~la~a~~~~~~~~G~ 407 (445)
-++ ..-+..+ +.+++++|++.|+.+.++-.. ..+... .++..+...++..+.+.+
T Consensus 91 ~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~D 162 (262)
T cd07948 91 VFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIAD 162 (262)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 432 2223444 666779999999998666521 122233 334445556777776544
No 169
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=44.78 E-value=4.2e+02 Score=28.36 Aligned_cols=129 Identities=9% Similarity=0.040 Sum_probs=76.1
Q ss_pred CCcChHHHHHHHHHhhhcCCeeEEEC--CC-CccCHHHHHHHHHHhCCceEEEecccc------ccCHHHHHHHHhcCCC
Q 013317 277 QKVSGDGLKNVYRSFISDHPIVSIED--PF-DQDDWEHYAELTGKIGRHVQIVGDDLL------VTNPKRVEKAIKEKTC 347 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~~iEd--P~-~~~D~~~~~~L~~~~~~~~pI~gde~~------~~~~~~~~~~i~~~a~ 347 (445)
..++.++.+++ .+.|++.++..||= |. .++|++.+++|.+.--.++.+++--.. ..+-..++.+++. ..
T Consensus 22 ~~~s~e~Kl~i-a~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~-g~ 99 (524)
T PRK12344 22 ISFSVEDKLRI-ARKLDELGVDYIEGGWPGSNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQALLDA-GT 99 (524)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHHHhC-CC
Confidence 46889999987 45688999999998 43 567788888887632012444431110 1112334444443 34
Q ss_pred CEEEeccC-------------ccccHHHHHHHHHHHHHcCCcEEecCCCC----CChhHHHHHH---HhhhcCCccccCC
Q 013317 348 NALLLKVN-------------QIGSVTESIEAVKMAKRAGWGVMASHRSG----ETEDTFIADL---SVGLATGQIKTGA 407 (445)
Q Consensus 348 d~v~ik~~-------------k~GGit~a~~i~~~A~~~g~~~~~~~~~~----et~~~~~~~l---a~a~~~~~~~~G~ 407 (445)
+.+.+=+. +---+..+.+.+++|+++|..+.+++... .+...+...+ +...++..+.+.+
T Consensus 100 ~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~D 179 (524)
T PRK12344 100 PVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWVVLCD 179 (524)
T ss_pred CEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCCCCeEEEcc
Confidence 55554321 12245667788899999999987766411 2344444444 3455677766544
No 170
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=44.70 E-value=3.9e+02 Score=28.61 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=72.6
Q ss_pred CCCcChHHHHHHHHHhhhcCCeeEEEC--CC-CccCHHHHHHHHHHhCCceEEEec------cccccCHHHHHHHHhcCC
Q 013317 276 SQKVSGDGLKNVYRSFISDHPIVSIED--PF-DQDDWEHYAELTGKIGRHVQIVGD------DLLVTNPKRVEKAIKEKT 346 (445)
Q Consensus 276 n~~~t~~~~i~~~~~~~~~~~i~~iEd--P~-~~~D~~~~~~L~~~~~~~~pI~gd------e~~~~~~~~~~~~i~~~a 346 (445)
+..++.++-+++ .+.|++.++.+||= |. .+.|++.++++.+.--.+..|++= +..+.+...+..+++. .
T Consensus 17 g~~~s~eeKl~I-a~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~-~ 94 (526)
T TIGR00977 17 GVSFSLEDKIRI-AERLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQALIKA-E 94 (526)
T ss_pred CCCCCHHHHHHH-HHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHHhcC-C
Confidence 346889998887 45689999999997 54 467888888887532112344321 1101112234444443 3
Q ss_pred CCEEEe-----------cc--CccccHHHHHHHHHHHHHcCCcEEecCC---CC-CChhHHHH---HHHhhhcCCccccC
Q 013317 347 CNALLL-----------KV--NQIGSVTESIEAVKMAKRAGWGVMASHR---SG-ETEDTFIA---DLSVGLATGQIKTG 406 (445)
Q Consensus 347 ~d~v~i-----------k~--~k~GGit~a~~i~~~A~~~g~~~~~~~~---~~-et~~~~~~---~la~a~~~~~~~~G 406 (445)
.+.+.+ ++ ++---+..+.+++++|+.+|..+..+.. .+ .+...+.. ..+...++..+.+-
T Consensus 95 ~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGad~i~i~ 174 (526)
T TIGR00977 95 TPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAGADWLVLC 174 (526)
T ss_pred CCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCCCeEEEe
Confidence 344544 22 2223344455668899999999765443 11 23344434 33444567666643
Q ss_pred C
Q 013317 407 A 407 (445)
Q Consensus 407 ~ 407 (445)
+
T Consensus 175 D 175 (526)
T TIGR00977 175 D 175 (526)
T ss_pred c
Confidence 3
No 171
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=43.62 E-value=2.7e+02 Score=25.77 Aligned_cols=44 Identities=14% Similarity=0.320 Sum_probs=31.6
Q ss_pred CccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEe
Q 013317 305 DQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 305 ~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
..-|++.++++++.++ +||++.-- +++++++.++.+. .+|.+.+
T Consensus 175 ~g~~~~~i~~i~~~~~--ipvi~~GG-i~~~~di~~~~~~-Ga~gv~v 218 (234)
T cd04732 175 SGPNFELYKELAAATG--IPVIASGG-VSSLDDIKALKEL-GVAGVIV 218 (234)
T ss_pred CCCCHHHHHHHHHhcC--CCEEEecC-CCCHHHHHHHHHC-CCCEEEE
Confidence 3347899999999887 88743332 4578999999886 5666655
No 172
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=43.57 E-value=3e+02 Score=29.18 Aligned_cols=142 Identities=13% Similarity=0.189 Sum_probs=85.1
Q ss_pred cChHHHHHHHHHhhhcCCeeEEECCCC--ccCHHHHHHHHHHhCCceEEEec-cccccCHHHHHHHHhcCCCCEEEeccC
Q 013317 279 VSGDGLKNVYRSFISDHPIVSIEDPFD--QDDWEHYAELTGKIGRHVQIVGD-DLLVTNPKRVEKAIKEKTCNALLLKVN 355 (445)
Q Consensus 279 ~t~~~~i~~~~~~~~~~~i~~iEdP~~--~~D~~~~~~L~~~~~~~~pI~gd-e~~~~~~~~~~~~i~~~a~d~v~ik~~ 355 (445)
+|..+.-+. ++.-+.++.||=--|- ++|+...+++.++....++|++- |. ....+.+...++. +|++.+-.+
T Consensus 172 ltekD~~di--~f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiakIEt-~~av~nldeI~~~--~DgImIarg 246 (480)
T cd00288 172 LSEKDKADL--RFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIEN-QEGVNNFDEILEA--SDGIMVARG 246 (480)
T ss_pred CCHHHHHHH--HHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECC-HHHHHhHHHHHHh--cCEEEECcc
Confidence 455554432 2333567777777763 56777777776655444665433 22 2334555556554 899998776
Q ss_pred cccc---HH----HHHHHHHHHHHcCCcEEecCCCCCChh-------HHHHHHHhhh--cCCccccCC-----CCCchhH
Q 013317 356 QIGS---VT----ESIEAVKMAKRAGWGVMASHRSGETED-------TFIADLSVGL--ATGQIKTGA-----PCRSERL 414 (445)
Q Consensus 356 k~GG---it----~a~~i~~~A~~~g~~~~~~~~~~et~~-------~~~~~la~a~--~~~~~~~G~-----~~~~er~ 414 (445)
..|. +. --.++++.|+++|+++++...+.||.. +=+.|+|-|. |+.-+.+.+ ....|-+
T Consensus 247 DLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~yPveaV 326 (480)
T cd00288 247 DLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKYPVEAV 326 (480)
T ss_pred hhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCCHHHHH
Confidence 5432 22 335688899999999998887777643 2356777666 666666533 2245555
Q ss_pred HHHHHHHHHHH
Q 013317 415 AKYNQLLRIEE 425 (445)
Q Consensus 415 ~k~n~ll~i~~ 425 (445)
...++.++-.|
T Consensus 327 ~~m~~I~~~aE 337 (480)
T cd00288 327 KAMARICLEAE 337 (480)
T ss_pred HHHHHHHHHHH
Confidence 55565554333
No 173
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=43.46 E-value=1.7e+02 Score=28.13 Aligned_cols=98 Identities=14% Similarity=0.243 Sum_probs=64.5
Q ss_pred CcChHHHHHHHHHhhhcCCeeEE-ECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCc
Q 013317 278 KVSGDGLKNVYRSFISDHPIVSI-EDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 356 (445)
Q Consensus 278 ~~t~~~~i~~~~~~~~~~~i~~i-EdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k 356 (445)
..++.+....|.+. -.-.|..+ |+++-...++.++.+++.++ +||.-.++. -++.++.+.-.. .+|+|.+=+.-
T Consensus 67 ~~d~~~~a~~y~~~-GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~--~PvL~KDFI-id~~QI~eA~~~-GADaVLLI~~~ 141 (254)
T PF00218_consen 67 DFDPAEIAKAYEEA-GAAAISVLTEPKFFGGSLEDLRAVRKAVD--LPVLRKDFI-IDPYQIYEARAA-GADAVLLIAAI 141 (254)
T ss_dssp S-SHHHHHHHHHHT-T-SEEEEE--SCCCHHHHHHHHHHHHHSS--S-EEEES----SHHHHHHHHHT-T-SEEEEEGGG
T ss_pred cCCHHHHHHHHHhc-CCCEEEEECCCCCCCCCHHHHHHHHHHhC--CCcccccCC-CCHHHHHHHHHc-CCCEeehhHHh
Confidence 45677765554331 11125544 66677888999999999998 999778774 457887776544 56888877776
Q ss_pred cccHHHHHHHHHHHHHcCCcEEecC
Q 013317 357 IGSVTESIEAVKMAKRAGWGVMASH 381 (445)
Q Consensus 357 ~GGit~a~~i~~~A~~~g~~~~~~~ 381 (445)
.+ -....++.++|+..|+.+.+--
T Consensus 142 L~-~~~l~~l~~~a~~lGle~lVEV 165 (254)
T PF00218_consen 142 LS-DDQLEELLELAHSLGLEALVEV 165 (254)
T ss_dssp SG-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred CC-HHHHHHHHHHHHHcCCCeEEEE
Confidence 64 3567899999999999997665
No 174
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.10 E-value=1.9e+02 Score=28.42 Aligned_cols=91 Identities=15% Similarity=0.108 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 013317 309 WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETED 388 (445)
Q Consensus 309 ~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~ 388 (445)
.+.+++++++.+. .+|.-+ +.|.+++.++++.+ +|++++|-+. +.+.++++.+.+..+-++.+-- +|....
T Consensus 187 ~~ai~~~r~~~~~-~kIeVE---v~tl~ea~eal~~g-aDiI~LDnm~---~e~vk~av~~~~~~~~~v~iea-SGGI~~ 257 (289)
T PRK07896 187 VAALRAVRAAAPD-LPCEVE---VDSLEQLDEVLAEG-AELVLLDNFP---VWQTQEAVQRRDARAPTVLLES-SGGLTL 257 (289)
T ss_pred HHHHHHHHHhCCC-CCEEEE---cCCHHHHHHHHHcC-CCEEEeCCCC---HHHHHHHHHHHhccCCCEEEEE-ECCCCH
Confidence 3677888877542 444322 45688898888766 5999999554 6777777777655544443333 344444
Q ss_pred HHHHHHHhhhcCCccccCCCC
Q 013317 389 TFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 389 ~~~~~la~a~~~~~~~~G~~~ 409 (445)
..+..+|- ++..++-.|.+.
T Consensus 258 ~ni~~yA~-tGvD~Is~galt 277 (289)
T PRK07896 258 DTAAAYAE-TGVDYLAVGALT 277 (289)
T ss_pred HHHHHHHh-cCCCEEEeChhh
Confidence 45555544 477888777764
No 175
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=42.94 E-value=97 Score=31.37 Aligned_cols=92 Identities=11% Similarity=0.191 Sum_probs=56.9
Q ss_pred cCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCcccc------HHHHHHHHHHHHHc--CCcEE
Q 013317 307 DDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS------VTESIEAVKMAKRA--GWGVM 378 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GG------it~a~~i~~~A~~~--g~~~~ 378 (445)
-+|+.+++|+++++ +||+--|. .++++++++.+.+ +|+|. ++..|| ++.+.-+.++.++. .++++
T Consensus 212 ~~w~~i~~~~~~~~--~pvivKgv--~~~~da~~~~~~G-~~~i~--vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~ 284 (356)
T PF01070_consen 212 LTWDDIEWIRKQWK--LPVIVKGV--LSPEDAKRAVDAG-VDGID--VSNHGGRQLDWGPPTIDALPEIRAAVGDDIPII 284 (356)
T ss_dssp -SHHHHHHHHHHCS--SEEEEEEE---SHHHHHHHHHTT--SEEE--EESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEE
T ss_pred CCHHHHHHHhcccC--CceEEEec--ccHHHHHHHHhcC-CCEEE--ecCCCcccCccccccccccHHHHhhhcCCeeEE
Confidence 46788999999998 99999986 3599999998766 44443 444444 66666666655545 48887
Q ss_pred ecCCCCCChhHHHHHHHhhhcCCccccCCC
Q 013317 379 ASHRSGETEDTFIADLSVGLATGQIKTGAP 408 (445)
Q Consensus 379 ~~~~~~et~~~~~~~la~a~~~~~~~~G~~ 408 (445)
++.. ..++...+-.| ++|+..+-.|.|
T Consensus 285 ~dgG-ir~g~Dv~kal--aLGA~~v~igr~ 311 (356)
T PF01070_consen 285 ADGG-IRRGLDVAKAL--ALGADAVGIGRP 311 (356)
T ss_dssp EESS---SHHHHHHHH--HTT-SEEEESHH
T ss_pred EeCC-CCCHHHHHHHH--HcCCCeEEEccH
Confidence 6663 44544443444 445666655543
No 176
>PRK08227 autoinducer 2 aldolase; Validated
Probab=42.91 E-value=1.2e+02 Score=29.26 Aligned_cols=63 Identities=22% Similarity=0.157 Sum_probs=42.6
Q ss_pred CCCEEEeccCcc-----ccHHHHHHHHHHHHHcCCcEEecCCCCCC------hhHHHHHHHhhhcCCccccCCC
Q 013317 346 TCNALLLKVNQI-----GSVTESIEAVKMAKRAGWGVMASHRSGET------EDTFIADLSVGLATGQIKTGAP 408 (445)
Q Consensus 346 a~d~v~ik~~k~-----GGit~a~~i~~~A~~~g~~~~~~~~~~et------~~~~~~~la~a~~~~~~~~G~~ 408 (445)
.+|+|.+-+..- =-+.++-++++.|+++|++++.-.-.++. -++.++.+|+-+|+.++|.-.+
T Consensus 107 GAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~ 180 (264)
T PRK08227 107 NACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYV 180 (264)
T ss_pred CCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCC
Confidence 456777665542 13667778888999999998763322221 2456778888888888887554
No 177
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=42.82 E-value=3.3e+02 Score=27.76 Aligned_cols=94 Identities=15% Similarity=0.290 Sum_probs=58.8
Q ss_pred ChHHHHHHHHHhhhcCCee----EEECCCCccCHHHHHHH------HH-HhCCceEEEeccccccCHHHHHHHHhcCCCC
Q 013317 280 SGDGLKNVYRSFISDHPIV----SIEDPFDQDDWEHYAEL------TG-KIGRHVQIVGDDLLVTNPKRVEKAIKEKTCN 348 (445)
Q Consensus 280 t~~~~i~~~~~~~~~~~i~----~iEdP~~~~D~~~~~~L------~~-~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d 348 (445)
+.+++-+++-+-|++++.. |+---+..+.++...++ ++ +...++--+|= |+..+.+.|.+++...-.|
T Consensus 91 ~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~~GF-SfHgs~e~~~~iv~a~~~d 169 (391)
T COG1453 91 DREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRNAGF-SFHGSTEVFKEIVDAYPWD 169 (391)
T ss_pred CHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcCcEEEeee-cCCCCHHHHHHHHhcCCcc
Confidence 5567777766667776653 33444544444433333 11 12223655665 4456789999999999999
Q ss_pred EEEeccC------ccccHHHHHHHHHHHHHcCCcEEe
Q 013317 349 ALLLKVN------QIGSVTESIEAVKMAKRAGWGVMA 379 (445)
Q Consensus 349 ~v~ik~~------k~GGit~a~~i~~~A~~~g~~~~~ 379 (445)
++|+..+ +.| .+..++|.++|+.++|
T Consensus 170 fvqlq~ny~d~~n~~~-----~~~l~~A~~~~~gI~I 201 (391)
T COG1453 170 FVQLQYNYIDQKNQAG-----TEGLKYAASKGLGIFI 201 (391)
T ss_pred eEEeeeeeeccchhcc-----cHHHHHHHhCCCcEEE
Confidence 9999875 344 3555677888877654
No 178
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=41.75 E-value=1.9e+02 Score=23.39 Aligned_cols=77 Identities=22% Similarity=0.181 Sum_probs=50.7
Q ss_pred hhcCCeeEEECCCCccCHHHHHHHHHHhCCceEE-EeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHH
Q 013317 292 ISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQI-VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMA 370 (445)
Q Consensus 292 ~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI-~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A 370 (445)
.+.+++..+.+ +.+|-+.....+-+ +.... .. .+-+.++++.+. +++.=|+.-. .+.++.++.+.|
T Consensus 43 ~~~~~~~~~~~---------~~~ll~~~~~D~V~I~tp~~-~h-~~~~~~~l~~g~-~v~~EKP~~~-~~~~~~~l~~~a 109 (120)
T PF01408_consen 43 AEKYGIPVYTD---------LEELLADEDVDAVIIATPPS-SH-AEIAKKALEAGK-HVLVEKPLAL-TLEEAEELVEAA 109 (120)
T ss_dssp HHHTTSEEESS---------HHHHHHHTTESEEEEESSGG-GH-HHHHHHHHHTTS-EEEEESSSSS-SHHHHHHHHHHH
T ss_pred HHHhcccchhH---------HHHHHHhhcCCEEEEecCCc-ch-HHHHHHHHHcCC-EEEEEcCCcC-CHHHHHHHHHHH
Confidence 35566654443 44555533212443 44433 23 567777888777 7777676654 799999999999
Q ss_pred HHcCCcEEecC
Q 013317 371 KRAGWGVMASH 381 (445)
Q Consensus 371 ~~~g~~~~~~~ 381 (445)
+++|..++++|
T Consensus 110 ~~~~~~~~Vg~ 120 (120)
T PF01408_consen 110 KEKGVKVMVGY 120 (120)
T ss_dssp HHHTSCEEEE-
T ss_pred HHhCCEEEEeC
Confidence 99999999886
No 179
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=41.74 E-value=2.8e+02 Score=26.19 Aligned_cols=49 Identities=8% Similarity=0.112 Sum_probs=33.4
Q ss_pred CCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhc--CCCCEEEec
Q 013317 302 DPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKE--KTCNALLLK 353 (445)
Q Consensus 302 dP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~--~a~d~v~ik 353 (445)
+....-|++.++++++.+. +||++.-- +++++|+.++.+. ..+|.+.+=
T Consensus 172 g~~~G~d~~~i~~i~~~~~--ipviasGG-i~s~~D~~~l~~~~~~GvdgV~ig 222 (241)
T PRK14024 172 GTLTGPNLELLREVCARTD--APVVASGG-VSSLDDLRALAELVPLGVEGAIVG 222 (241)
T ss_pred CCccCCCHHHHHHHHhhCC--CCEEEeCC-CCCHHHHHHHhhhccCCccEEEEe
Confidence 3344448999999999987 88733322 4579999988643 467777654
No 180
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=41.59 E-value=3.7e+02 Score=26.76 Aligned_cols=113 Identities=12% Similarity=0.147 Sum_probs=63.3
Q ss_pred HHHHhhhcCCeeEEE-CC---CCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccC-------
Q 013317 287 VYRSFISDHPIVSIE-DP---FDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN------- 355 (445)
Q Consensus 287 ~~~~~~~~~~i~~iE-dP---~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~------- 355 (445)
.+..+++ .++..|+ +. -+..-.+..++++++.+ .+||+... +.+++.++.+++. .+|+|.+-..
T Consensus 98 ~~~~l~e-agv~~I~vd~~~G~~~~~~~~i~~ik~~~p-~v~Vi~G~--v~t~~~A~~l~~a-GaD~I~vg~g~G~~~~t 172 (325)
T cd00381 98 RAEALVE-AGVDVIVIDSAHGHSVYVIEMIKFIKKKYP-NVDVIAGN--VVTAEAARDLIDA-GADGVKVGIGPGSICTT 172 (325)
T ss_pred HHHHHHh-cCCCEEEEECCCCCcHHHHHHHHHHHHHCC-CceEEECC--CCCHHHHHHHHhc-CCCEEEECCCCCcCccc
Confidence 3344444 5555555 11 12222456777887764 48886654 3568888888765 4677765321
Q ss_pred c------cccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhcCCccccCC
Q 013317 356 Q------IGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGA 407 (445)
Q Consensus 356 k------~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~ 407 (445)
+ ...++...++.+.++..+++++.... ..+... +.-|+++++..+..|.
T Consensus 173 ~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GG-I~~~~d--i~kAla~GA~~VmiGt 227 (325)
T cd00381 173 RIVTGVGVPQATAVADVAAAARDYGVPVIADGG-IRTSGD--IVKALAAGADAVMLGS 227 (325)
T ss_pred ceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCC-CCCHHH--HHHHHHcCCCEEEecc
Confidence 1 12345566777778888999764332 222222 2223345676666655
No 181
>PLN02535 glycolate oxidase
Probab=41.10 E-value=2.2e+02 Score=29.02 Aligned_cols=94 Identities=12% Similarity=0.135 Sum_probs=55.7
Q ss_pred cCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccC---cc-ccHHHHHHHHHHHHHc--CCcEEec
Q 013317 307 DDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN---QI-GSVTESIEAVKMAKRA--GWGVMAS 380 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~---k~-GGit~a~~i~~~A~~~--g~~~~~~ 380 (445)
-+|+..++|++..+ +||+.-+. .++++++.+++.+ +|+|.+.=. +. +++....-+.++.++. .++++..
T Consensus 210 ~tW~~i~~lr~~~~--~PvivKgV--~~~~dA~~a~~~G-vD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~d 284 (364)
T PLN02535 210 LSWKDIEWLRSITN--LPILIKGV--LTREDAIKAVEVG-VAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLD 284 (364)
T ss_pred CCHHHHHHHHhccC--CCEEEecC--CCHHHHHHHHhcC-CCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEee
Confidence 47888999999887 99977775 3589998887754 677655310 11 2343344444444443 5887655
Q ss_pred CCCCCChhHHHHHHHhhhcCCccccCCC
Q 013317 381 HRSGETEDTFIADLSVGLATGQIKTGAP 408 (445)
Q Consensus 381 ~~~~et~~~~~~~la~a~~~~~~~~G~~ 408 (445)
.. ..+.....-. +++|+..+..|.+
T Consensus 285 GG-Ir~g~Dv~KA--LalGA~aV~vGr~ 309 (364)
T PLN02535 285 GG-VRRGTDVFKA--LALGAQAVLVGRP 309 (364)
T ss_pred CC-CCCHHHHHHH--HHcCCCEEEECHH
Confidence 42 3443333333 4445666666553
No 182
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=40.55 E-value=91 Score=28.08 Aligned_cols=56 Identities=20% Similarity=0.167 Sum_probs=42.7
Q ss_pred HhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCE
Q 013317 290 SFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNA 349 (445)
Q Consensus 290 ~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~ 349 (445)
+.+++..+.++| -+|-=-..-.+++.++++ .||+++-+ +.+.+++..++..++.-+
T Consensus 115 ~~i~~~~pD~iE-vLPGv~Pkvi~~i~~~t~--~piIAGGL-i~t~Eev~~Al~aGA~av 170 (181)
T COG1954 115 KQIEKSEPDFIE-VLPGVMPKVIKEITEKTH--IPIIAGGL-IETEEEVREALKAGAVAV 170 (181)
T ss_pred HHHHHcCCCEEE-EcCcccHHHHHHHHHhcC--CCEEeccc-cccHHHHHHHHHhCcEEE
Confidence 345666778887 555545678899999998 99977777 567999999999887643
No 183
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=40.46 E-value=1.5e+02 Score=29.34 Aligned_cols=107 Identities=13% Similarity=0.153 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHhcCCCcceEEEEecc--ccccccc-----------cCcceeecccCCCCCCCCCcChHHHHHHHHHhh
Q 013317 226 YEGFELLKTAIAKGGYIGKIVIGMDVA--ASEFYDR-----------KDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFI 292 (445)
Q Consensus 226 ~~~l~~v~~ai~~~G~~~~i~l~vD~~--a~~~~~~-----------~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~ 292 (445)
.-++.++|+++.+.|+. ++.||-=.+ ++.||.+ ++..|+.+.. +..|+++....-+
T Consensus 171 DGrV~aIR~aLd~~g~~-~v~ImSYsaKyaS~fYGPFRdAa~Sap~gDrksYQmdp~----------n~~eAlre~~~D~ 239 (322)
T PRK13384 171 DGQVKAIRQGLDAAGFE-HVAILAHSAKFASSFYGPFRAAVDCELSGDRKSYQLDYA----------NGRQALLEALLDE 239 (322)
T ss_pred ccHHHHHHHHHHHCCCC-CCceeehhHhhhhhhcchHHHHhcCCCCCCcccccCCCC----------CHHHHHHHHHhhH
Confidence 45788999999999984 566663222 4556642 3457887643 3456665433323
Q ss_pred hc-CCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCC
Q 013317 293 SD-HPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCN 348 (445)
Q Consensus 293 ~~-~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d 348 (445)
++ .++.++.=-++- ++-.+++++++. +|+++-..+ .-..-++...+.+..|
T Consensus 240 ~EGAD~lMVKPal~Y--LDIi~~~k~~~~--lPvaaYqVS-GEYaMikaAa~~G~~d 291 (322)
T PRK13384 240 AEGADILMVKPGTPY--LDVLSRLRQETH--LPLAAYQVG-GEYAMIKFAALAGALD 291 (322)
T ss_pred hhCCCEEEEcCCchH--HHHHHHHHhccC--CCEEEEEch-HHHHHHHHHHHcCCcc
Confidence 33 557777655553 456788888887 999887653 2233445566666666
No 184
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=40.06 E-value=1.3e+02 Score=28.94 Aligned_cols=97 Identities=14% Similarity=0.101 Sum_probs=61.6
Q ss_pred CcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCcc
Q 013317 278 KVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 357 (445)
Q Consensus 278 ~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~ 357 (445)
++-.++-++.+.+.-+++++-.+=|-..+++.+..++. .+ +-=+|=-.+ .+. ++.+.+ .+.-..|++|=.+.
T Consensus 55 G~G~eeGL~iL~~vk~~~glpvvTeV~~~~~~~~vae~---vD--ilQIgArn~-rn~-~LL~a~-g~t~kpV~lKrG~~ 126 (258)
T TIGR01362 55 GPGLEEGLKILQKVKEEFGVPILTDVHESSQCEPVAEV---VD--IIQIPAFLC-RQT-DLLVAA-AKTGRIVNVKKGQF 126 (258)
T ss_pred CCCHHHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhh---Cc--EEEeCchhc-chH-HHHHHH-hccCCeEEecCCCc
Confidence 33345667777776667887666666665554444433 43 333555543 443 333332 23456899999999
Q ss_pred ccHHHHHHHHHHHHHcCC-cEEecCC
Q 013317 358 GSVTESIEAVKMAKRAGW-GVMASHR 382 (445)
Q Consensus 358 GGit~a~~i~~~A~~~g~-~~~~~~~ 382 (445)
.++.+++-+++++.+.|- ++++-++
T Consensus 127 ~t~~e~l~aaeyi~~~Gn~~viLcER 152 (258)
T TIGR01362 127 LSPWDMKNVVEKVLSTGNKNILLCER 152 (258)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 999999999999998864 4555543
No 185
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=39.15 E-value=4.1e+02 Score=26.60 Aligned_cols=127 Identities=10% Similarity=0.050 Sum_probs=79.5
Q ss_pred CCCcChHHHHHHHHHhhhcCCeeEEEC-------------CC-CccCHHHHHHHHHHhCCceEEE--eccccccCHHHHH
Q 013317 276 SQKVSGDGLKNVYRSFISDHPIVSIED-------------PF-DQDDWEHYAELTGKIGRHVQIV--GDDLLVTNPKRVE 339 (445)
Q Consensus 276 n~~~t~~~~i~~~~~~~~~~~i~~iEd-------------P~-~~~D~~~~~~L~~~~~~~~pI~--gde~~~~~~~~~~ 339 (445)
+..++.++.++++ +.+++.++..||= -+ ...|++.++.++...+ ++.+. ..=. ..+..+++
T Consensus 19 ~~~f~~~~~~~i~-~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~-~~~~~~ll~pg-~~~~~dl~ 95 (337)
T PRK08195 19 RHQYTLEQVRAIA-RALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVK-QAKIAALLLPG-IGTVDDLK 95 (337)
T ss_pred CCccCHHHHHHHH-HHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCC-CCEEEEEeccC-cccHHHHH
Confidence 3457888988874 5678899999987 22 2346777788876643 24442 3211 12478888
Q ss_pred HHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCC-CCCChhHHH---HHHHhhhcCCccccCC
Q 013317 340 KAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHR-SGETEDTFI---ADLSVGLATGQIKTGA 407 (445)
Q Consensus 340 ~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~-~~et~~~~~---~~la~a~~~~~~~~G~ 407 (445)
...+.+ +|.+.+-.. +.=...+++.+++|+++|+.+.+.-+ ......... +..+...++..+.+-+
T Consensus 96 ~a~~~g-vd~iri~~~-~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~D 165 (337)
T PRK08195 96 MAYDAG-VRVVRVATH-CTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVD 165 (337)
T ss_pred HHHHcC-CCEEEEEEe-cchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCC
Confidence 877664 677776542 22346788999999999998754332 223334333 3445556777766444
No 186
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=39.15 E-value=1.2e+02 Score=29.46 Aligned_cols=64 Identities=16% Similarity=0.247 Sum_probs=47.4
Q ss_pred HHHHHHhCCceEE--EeccccccCHHHHHHHHhcCCCCEEEeccCcc---ccHHHHHHHHHHHHHcCCcE--EecC
Q 013317 313 AELTGKIGRHVQI--VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI---GSVTESIEAVKMAKRAGWGV--MASH 381 (445)
Q Consensus 313 ~~L~~~~~~~~pI--~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~---GGit~a~~i~~~A~~~g~~~--~~~~ 381 (445)
..++++.+ +|| =.|. ..+.+.+.+.++.+ ++.|++|-+.. -=|..+++++++|++.|+.+ -+||
T Consensus 62 ~~~a~~~~--VPV~lHLDH--~~~~~~i~~ai~~G-ftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~ 132 (276)
T cd00947 62 KAAAERAS--VPVALHLDH--GSSFELIKRAIRAG-FSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGR 132 (276)
T ss_pred HHHHHHCC--CCEEEECCC--CCCHHHHHHHHHhC-CCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEee
Confidence 34444555 554 5675 35789999999887 89999998764 23667899999999999876 4455
No 187
>TIGR03586 PseI pseudaminic acid synthase.
Probab=38.58 E-value=1.5e+02 Score=29.71 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=23.4
Q ss_pred ChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHH
Q 013317 280 SGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAEL 315 (445)
Q Consensus 280 t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L 315 (445)
+.++..+ +.+.+++++|.|+=.||+.++.+-+.++
T Consensus 75 ~~e~~~~-L~~~~~~~Gi~~~stpfd~~svd~l~~~ 109 (327)
T TIGR03586 75 PWEWHKE-LFERAKELGLTIFSSPFDETAVDFLESL 109 (327)
T ss_pred CHHHHHH-HHHHHHHhCCcEEEccCCHHHHHHHHHc
Confidence 3444333 3556788999999999987766555443
No 188
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=38.24 E-value=62 Score=30.17 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=34.0
Q ss_pred cCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEe
Q 013317 307 DDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
-|++.++++++.++ +||++.-- ++++++++++.+.+.+|.+.+
T Consensus 177 ~d~~~i~~l~~~~~--ipvia~GG-i~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 177 PNVEATRELAAAVP--IPVIASGG-VSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred CCHHHHHHHHHhCC--CCEEEeCC-CCCHHHHHHHHHcCCccEEEE
Confidence 47899999999887 88743332 467999999999887888875
No 189
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=37.94 E-value=2.7e+02 Score=27.90 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=49.6
Q ss_pred HHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCcccc---HH-----------HHHHHHHHHHHcCCcE
Q 013317 312 YAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS---VT-----------ESIEAVKMAKRAGWGV 377 (445)
Q Consensus 312 ~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GG---it-----------~a~~i~~~A~~~g~~~ 377 (445)
.++++++.+ .+||+..+. .++++++.+++.+ +|++.+- --|| +| .+--+.++++...+++
T Consensus 131 I~~ir~~~p-~~~vi~g~V--~t~e~a~~l~~aG-ad~i~vg--~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipV 204 (326)
T PRK05458 131 IQHIKKHLP-ETFVIAGNV--GTPEAVRELENAG-ADATKVG--IGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPI 204 (326)
T ss_pred HHHHHhhCC-CCeEEEEec--CCHHHHHHHHHcC-cCEEEEC--CCCCcccccccccCCCCCccHHHHHHHHHHHcCCCE
Confidence 677777764 378877664 4689998888765 6774422 2122 11 1212444445567887
Q ss_pred EecCCCCCChhHHHHHHHhhhcCCccccCCCC
Q 013317 378 MASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 378 ~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
+.... ..+.....- |+++++..+..|.+.
T Consensus 205 IAdGG-I~~~~Di~K--aLa~GA~aV~vG~~~ 233 (326)
T PRK05458 205 IADGG-IRTHGDIAK--SIRFGATMVMIGSLF 233 (326)
T ss_pred EEeCC-CCCHHHHHH--HHHhCCCEEEechhh
Confidence 54442 333333222 344467777777643
No 190
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=36.93 E-value=1.3e+02 Score=30.09 Aligned_cols=88 Identities=18% Similarity=0.302 Sum_probs=44.8
Q ss_pred cChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccc
Q 013317 279 VSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 358 (445)
Q Consensus 279 ~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~G 358 (445)
++.++. +.+.+.+++++|.|+=.||+.++.+-+.++- .+ -..|...| +++..=++.+.+. ---|.++.+- .
T Consensus 73 l~~e~~-~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~--v~-~~KIaS~~--~~n~pLL~~~A~~--gkPvilStGm-a 143 (329)
T TIGR03569 73 LSEEDH-RELKEYCESKGIEFLSTPFDLESADFLEDLG--VP-RFKIPSGE--ITNAPLLKKIARF--GKPVILSTGM-A 143 (329)
T ss_pred CCHHHH-HHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CC-EEEECccc--ccCHHHHHHHHhc--CCcEEEECCC-C
Confidence 344443 4456778899999999999876655444330 00 01222222 2333333333222 2234555544 2
Q ss_pred cHHHHHHHHHHHHHcCC
Q 013317 359 SVTESIEAVKMAKRAGW 375 (445)
Q Consensus 359 Git~a~~i~~~A~~~g~ 375 (445)
++.+..+++++.+++|.
T Consensus 144 tl~Ei~~Av~~i~~~G~ 160 (329)
T TIGR03569 144 TLEEIEAAVGVLRDAGT 160 (329)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 55555555555555554
No 191
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=36.66 E-value=2.7e+02 Score=28.50 Aligned_cols=91 Identities=10% Similarity=0.207 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCcccc------HHHHHHHHHHHHHc--CCcEEe
Q 013317 308 DWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS------VTESIEAVKMAKRA--GWGVMA 379 (445)
Q Consensus 308 D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GG------it~a~~i~~~A~~~--g~~~~~ 379 (445)
+|+.+++|++..+ .||+.-+. .+.++++++++.+ +|+|.+. ..|| ++.+.-+.+++++. ++++++
T Consensus 233 tW~di~~lr~~~~--~pvivKgV--~s~~dA~~a~~~G-vd~I~Vs--~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~ 305 (381)
T PRK11197 233 SWKDLEWIRDFWD--GPMVIKGI--LDPEDARDAVRFG-ADGIVVS--NHGGRQLDGVLSSARALPAIADAVKGDITILA 305 (381)
T ss_pred CHHHHHHHHHhCC--CCEEEEec--CCHHHHHHHHhCC-CCEEEEC--CCCCCCCCCcccHHHHHHHHHHHhcCCCeEEe
Confidence 6778999999998 99988876 4589999998765 5666543 3344 12222223334433 578766
Q ss_pred cCCCCCChhHHHHHHHhhhcCCccccCCC
Q 013317 380 SHRSGETEDTFIADLSVGLATGQIKTGAP 408 (445)
Q Consensus 380 ~~~~~et~~~~~~~la~a~~~~~~~~G~~ 408 (445)
... .-++....- |+++|+..+..|.+
T Consensus 306 dGG-Ir~g~Di~K--ALaLGA~~V~iGr~ 331 (381)
T PRK11197 306 DSG-IRNGLDVVR--MIALGADTVLLGRA 331 (381)
T ss_pred eCC-cCcHHHHHH--HHHcCcCceeEhHH
Confidence 553 233222222 34456666666553
No 192
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=36.59 E-value=4e+02 Score=25.72 Aligned_cols=128 Identities=17% Similarity=0.133 Sum_probs=77.3
Q ss_pred CcChHHHHHHHHHhhhcCCeeEEECCC-----------CccCHHHHHHHHHHhCCceEEEe----ccccc-------cCH
Q 013317 278 KVSGDGLKNVYRSFISDHPIVSIEDPF-----------DQDDWEHYAELTGKIGRHVQIVG----DDLLV-------TNP 335 (445)
Q Consensus 278 ~~t~~~~i~~~~~~~~~~~i~~iEdP~-----------~~~D~~~~~~L~~~~~~~~pI~g----de~~~-------~~~ 335 (445)
.++.+|.++. .+.+++.++.+||=-. ..++++.++++++..+ ++++.+ .+... -..
T Consensus 17 ~~~~~~~~~i-a~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~-~~~l~~~~r~~~~~~~~~~p~~~~~ 94 (275)
T cd07937 17 RMRTEDMLPI-AEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMP-NTPLQMLLRGQNLVGYRHYPDDVVE 94 (275)
T ss_pred eccHHHHHHH-HHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCC-CCceehhcccccccCccCCCcHHHH
Confidence 4678888886 5568889999999855 4567777888877643 345421 11100 024
Q ss_pred HHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCC---CCCChhHHHH---HHHhhhcCCccccCCCC
Q 013317 336 KRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHR---SGETEDTFIA---DLSVGLATGQIKTGAPC 409 (445)
Q Consensus 336 ~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~---~~et~~~~~~---~la~a~~~~~~~~G~~~ 409 (445)
.+++...+ ...+.+.+-.... =+..+.+.+++|++.|+.+.+.=+ ...+...... ..+...++..+.+.+..
T Consensus 95 ~di~~~~~-~g~~~iri~~~~~-~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~ 172 (275)
T cd07937 95 LFVEKAAK-NGIDIFRIFDALN-DVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMA 172 (275)
T ss_pred HHHHHHHH-cCCCEEEEeecCC-hHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 45555443 3467777644322 378899999999999988653211 1233344333 34555677777765544
No 193
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=36.58 E-value=3.1e+02 Score=26.90 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=55.6
Q ss_pred HHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhH
Q 013317 310 EHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+..+++++..+. .+|.-+ +.+.++++++++.+ +|+|++|-+. ..+..+++.+.++.+-++.+.- +|.....
T Consensus 178 ~av~~~r~~~~~-~kIeVE---v~tleqa~ea~~ag-aDiI~LDn~~---~e~l~~av~~~~~~~~~~~lea-SGGI~~~ 248 (284)
T PRK06096 178 GAINQLRRHAPE-KKIVVE---ADTPKEAIAALRAQ-PDVLQLDKFS---PQQATEIAQIAPSLAPHCTLSL-AGGINLN 248 (284)
T ss_pred HHHHHHHHhCCC-CCEEEE---CCCHHHHHHHHHcC-CCEEEECCCC---HHHHHHHHHHhhccCCCeEEEE-ECCCCHH
Confidence 456777766542 233222 45789999998876 7999998664 5666666666654333443444 3444455
Q ss_pred HHHHHHhhhcCCccccCCCC
Q 013317 390 FIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 390 ~~~~la~a~~~~~~~~G~~~ 409 (445)
.+..+|- ++..++-.|.+.
T Consensus 249 ni~~yA~-tGvD~Is~gal~ 267 (284)
T PRK06096 249 TLKNYAD-CGIRLFITSAPY 267 (284)
T ss_pred HHHHHHh-cCCCEEEECccc
Confidence 5555544 477888777764
No 194
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.41 E-value=2.8e+02 Score=26.99 Aligned_cols=90 Identities=16% Similarity=0.061 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHH--cCCcEEecCCCCCC
Q 013317 309 WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKR--AGWGVMASHRSGET 386 (445)
Q Consensus 309 ~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~--~g~~~~~~~~~~et 386 (445)
.+..++++++.+...+|..| +.+.+++..+++.+ +|+|++|-+ .+.+..+++++.+. .++.+..+.+ .
T Consensus 169 ~~~v~~~k~~~p~~~~I~VE---v~tleea~~A~~~G-aDiI~LDn~---~~e~l~~~v~~~~~~~~~~~ieAsGg---I 238 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIE---CESLEEAKNAMNAG-ADIVMCDNM---SVEEIKEVVAYRNANYPHVLLEASGN---I 238 (273)
T ss_pred HHHHHHHHHhCCCCceEEEE---eCCHHHHHHHHHcC-CCEEEECCC---CHHHHHHHHHHhhccCCCeEEEEECC---C
Confidence 35677777776532556554 45789999988766 599998876 45666666666543 2334444432 2
Q ss_pred hhHHHHHHHhhhcCCccccCCCC
Q 013317 387 EDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 387 ~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
....+..+ ..+++.++-.|.+.
T Consensus 239 t~~ni~~y-a~~GvD~IsvG~l~ 260 (273)
T PRK05848 239 TLENINAY-AKSGVDAISSGSLI 260 (273)
T ss_pred CHHHHHHH-HHcCCCEEEeChhh
Confidence 22333333 34577777777754
No 195
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=36.33 E-value=1.9e+02 Score=29.11 Aligned_cols=75 Identities=17% Similarity=0.120 Sum_probs=49.5
Q ss_pred HHHHHhcCCCCEEEeccCcc-----ccHHHHHHHHHHHHHcCCcEEecCC-CC-----CC-------hhHHHHHHHhhhc
Q 013317 338 VEKAIKEKTCNALLLKVNQI-----GSVTESIEAVKMAKRAGWGVMASHR-SG-----ET-------EDTFIADLSVGLA 399 (445)
Q Consensus 338 ~~~~i~~~a~d~v~ik~~k~-----GGit~a~~i~~~A~~~g~~~~~~~~-~~-----et-------~~~~~~~la~a~~ 399 (445)
++++++.+ +|+|.+-+.-- =-+.++.++++.|+++|+++++-.. .+ +. -++.++++|+-+|
T Consensus 152 VedAlrLG-AdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELG 230 (348)
T PRK09250 152 VEDALRLG-AVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIG 230 (348)
T ss_pred HHHHHHCC-CCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHc
Confidence 34444444 56666655431 1466778888999999999876221 11 11 2467889999999
Q ss_pred CCccccCCCCCchh
Q 013317 400 TGQIKTGAPCRSER 413 (445)
Q Consensus 400 ~~~~~~G~~~~~er 413 (445)
+.++|.-.|...+.
T Consensus 231 ADIVKv~yp~~~~~ 244 (348)
T PRK09250 231 ADIIKQKLPTNNGG 244 (348)
T ss_pred CCEEEecCCCChhh
Confidence 99999777754443
No 196
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=36.10 E-value=1.6e+02 Score=28.38 Aligned_cols=98 Identities=14% Similarity=0.101 Sum_probs=63.0
Q ss_pred CCcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCc
Q 013317 277 QKVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 356 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k 356 (445)
|++-.++-++.+.+.-+++++-.+=|-..+++.+..++. .+ +-=+|=-.+ .+. ++.+.+ .+.-..|++|=.+
T Consensus 62 qG~G~eeGL~~L~~vk~~~GlpvvTeV~~~~~~~~v~~~---~D--ilQIgArn~-rn~-~LL~a~-g~t~kpV~lKrG~ 133 (264)
T PRK05198 62 RGPGLEEGLKILQEVKETFGVPVLTDVHEPEQAAPVAEV---VD--VLQIPAFLC-RQT-DLLVAA-AKTGKVVNIKKGQ 133 (264)
T ss_pred CCCChHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhh---Cc--EEEECchhc-chH-HHHHHH-hccCCeEEecCCC
Confidence 344445667777776667887777777766555544443 33 333555553 443 333332 2345689999999
Q ss_pred cccHHHHHHHHHHHHHcC-CcEEecCC
Q 013317 357 IGSVTESIEAVKMAKRAG-WGVMASHR 382 (445)
Q Consensus 357 ~GGit~a~~i~~~A~~~g-~~~~~~~~ 382 (445)
.-++.+++-+++++.+.| -.+++-++
T Consensus 134 ~~t~~e~~~aaeyi~~~Gn~~vilcER 160 (264)
T PRK05198 134 FLAPWDMKNVVDKVREAGNDKIILCER 160 (264)
T ss_pred cCCHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 999999999999999886 45554443
No 197
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=35.70 E-value=3.1e+02 Score=26.71 Aligned_cols=90 Identities=13% Similarity=0.031 Sum_probs=56.1
Q ss_pred HHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhH
Q 013317 310 EHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+..+++++..+. .+|.-+ +.+.++++++++.+ +|++++|-+ ...+..+.+++.+..+..+.+.- +|.....
T Consensus 177 ~av~~~r~~~~~-~kIeVE---v~tleea~ea~~~G-aDiI~lDn~---~~e~l~~~v~~l~~~~~~~~lea-sGGI~~~ 247 (277)
T TIGR01334 177 GAIGRLKQTAPE-RKITVE---ADTIEQALTVLQAS-PDILQLDKF---TPQQLHHLHERLKFFDHIPTLAA-AGGINPE 247 (277)
T ss_pred HHHHHHHHhCCC-CCEEEE---CCCHHHHHHHHHcC-cCEEEECCC---CHHHHHHHHHHHhccCCCEEEEE-ECCCCHH
Confidence 456666665432 334333 34689999998877 799999944 46777777777764444444444 3444444
Q ss_pred HHHHHHhhhcCCccccCCCC
Q 013317 390 FIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 390 ~~~~la~a~~~~~~~~G~~~ 409 (445)
.+..+| .++..++..|.|.
T Consensus 248 ni~~ya-~~GvD~is~gal~ 266 (277)
T TIGR01334 248 NIADYI-EAGIDLFITSAPY 266 (277)
T ss_pred HHHHHH-hcCCCEEEeCcce
Confidence 445543 3577888877764
No 198
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=35.61 E-value=2.9e+02 Score=27.62 Aligned_cols=116 Identities=10% Similarity=0.080 Sum_probs=61.9
Q ss_pred HHHHHhhhcC-Cee-EEECCCCcc---CHHHHHHHHHHhCCceE-EEeccccccCHHHHHHHHhcCCCCEEEeccC--c-
Q 013317 286 NVYRSFISDH-PIV-SIEDPFDQD---DWEHYAELTGKIGRHVQ-IVGDDLLVTNPKRVEKAIKEKTCNALLLKVN--Q- 356 (445)
Q Consensus 286 ~~~~~~~~~~-~i~-~iEdP~~~~---D~~~~~~L~~~~~~~~p-I~gde~~~~~~~~~~~~i~~~a~d~v~ik~~--k- 356 (445)
+++..+++.. ... .+-|+=+-+ -++..++|++.++ .| |+..+. .+.++.+.+++.++ |++.+-+. .
T Consensus 97 ~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p--~~~vi~GnV--~t~e~a~~l~~aGa-d~I~V~~G~G~~ 171 (321)
T TIGR01306 97 EFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLP--DSFVIAGNV--GTPEAVRELENAGA-DATKVGIGPGKV 171 (321)
T ss_pred HHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCC--CCEEEEecC--CCHHHHHHHHHcCc-CEEEECCCCCcc
Confidence 3445666653 122 234553322 2456788888876 44 667765 35899999888765 66655431 1
Q ss_pred --------ccc-HHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhcCCccccCCCC
Q 013317 357 --------IGS-VTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 357 --------~GG-it~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
+|. -..+.-+.+.+++..++++.... ..+.....- |+++++..+..|.+.
T Consensus 172 ~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGG-Ir~~~Di~K--ALa~GAd~Vmig~~~ 230 (321)
T TIGR01306 172 CITKIKTGFGTGGWQLAALRWCAKAARKPIIADGG-IRTHGDIAK--SIRFGASMVMIGSLF 230 (321)
T ss_pred ccceeeeccCCCchHHHHHHHHHHhcCCeEEEECC-cCcHHHHHH--HHHcCCCEEeechhh
Confidence 111 01223344555566788754442 233333222 344577777777654
No 199
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=35.36 E-value=3.6e+02 Score=24.83 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=63.2
Q ss_pred HHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEe------c--ccccc-CHHHHHHHHhcCCCCEEEe
Q 013317 282 DGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVG------D--DLLVT-NPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 282 ~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~g------d--e~~~~-~~~~~~~~i~~~a~d~v~i 352 (445)
....+. .+.+.+.++..++ + ..++.++.+++... +||++ + +..++ +.++++.+.+.++ |++.+
T Consensus 27 ~~i~~~-a~~~~~~G~~~~~--~--~~~~~~~~i~~~~~--iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGa-d~I~~ 98 (219)
T cd04729 27 EIMAAM-ALAAVQGGAVGIR--A--NGVEDIRAIRARVD--LPIIGLIKRDYPDSEVYITPTIEEVDALAAAGA-DIIAL 98 (219)
T ss_pred HHHHHH-HHHHHHCCCeEEE--c--CCHHHHHHHHHhCC--CCEEEEEecCCCCCCceeCCCHHHHHHHHHcCC-CEEEE
Confidence 344443 4445667887777 3 56788888888766 88864 1 11111 2346766776665 58888
Q ss_pred ccCccccH--HHHHHHHHHHHHcC-CcEEecCCCCCChhHHHHHHHhhhcCCcccc
Q 013317 353 KVNQIGSV--TESIEAVKMAKRAG-WGVMASHRSGETEDTFIADLSVGLATGQIKT 405 (445)
Q Consensus 353 k~~k~GGi--t~a~~i~~~A~~~g-~~~~~~~~~~et~~~~~~~la~a~~~~~~~~ 405 (445)
+..-...- .+..++.+.+++.+ +.++++... ... +..+...++.++..
T Consensus 99 ~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t---~~e--a~~a~~~G~d~i~~ 149 (219)
T cd04729 99 DATDRPRPDGETLAELIKRIHEEYNCLLMADIST---LEE--ALNAAKLGFDIIGT 149 (219)
T ss_pred eCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCC---HHH--HHHHHHcCCCEEEc
Confidence 86543211 24556776777777 777655421 111 23334456666643
No 200
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=34.90 E-value=3.5e+02 Score=24.89 Aligned_cols=112 Identities=20% Similarity=0.165 Sum_probs=66.2
Q ss_pred ChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEE---e-c----ccccc-CHHHHHHHHhcCCCCEE
Q 013317 280 SGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIV---G-D----DLLVT-NPKRVEKAIKEKTCNAL 350 (445)
Q Consensus 280 t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~---g-d----e~~~~-~~~~~~~~i~~~a~d~v 350 (445)
+.++..++ .+.+...+...++= ..++..+++++.+. +||+ - | ..+.. +.++++.+.+.+ +|++
T Consensus 21 ~~~~~~~~-a~a~~~~G~~~~~~----~~~~~i~~i~~~~~--~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aG-ad~I 92 (221)
T PRK01130 21 SPEIMAAM-ALAAVQGGAVGIRA----NGVEDIKAIRAVVD--VPIIGIIKRDYPDSEVYITPTLKEVDALAAAG-ADII 92 (221)
T ss_pred CHHHHHHH-HHHHHHCCCeEEEc----CCHHHHHHHHHhCC--CCEEEEEecCCCCCCceECCCHHHHHHHHHcC-CCEE
Confidence 34455554 44567778777772 24788899988877 8874 1 1 23222 234666676666 4699
Q ss_pred EeccCcc---ccHHHHHHHHHHHHH-cCCcEEecCCCCCChhHHHHHHHhhhcCCcccc
Q 013317 351 LLKVNQI---GSVTESIEAVKMAKR-AGWGVMASHRSGETEDTFIADLSVGLATGQIKT 405 (445)
Q Consensus 351 ~ik~~k~---GGit~a~~i~~~A~~-~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~ 405 (445)
.++..-. .+ .+..++++.+++ .++.++++..+.+ . +..+...++.++..
T Consensus 93 ~~d~~~~~~p~~-~~~~~~i~~~~~~~~i~vi~~v~t~e---e--~~~a~~~G~d~i~~ 145 (221)
T PRK01130 93 ALDATLRPRPDG-ETLAELVKRIKEYPGQLLMADCSTLE---E--GLAAQKLGFDFIGT 145 (221)
T ss_pred EEeCCCCCCCCC-CCHHHHHHHHHhCCCCeEEEeCCCHH---H--HHHHHHcCCCEEEc
Confidence 9886532 11 455677788888 8888876553211 1 12344445666544
No 201
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.87 E-value=2.2e+02 Score=27.80 Aligned_cols=90 Identities=20% Similarity=0.184 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 013317 309 WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETED 388 (445)
Q Consensus 309 ~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~ 388 (445)
.+.+++++++.+...+|.-+ +.|.+++.++++.+ +|+|++|-+. ..+.++++.+.+.... +.++ |....
T Consensus 181 ~~ai~~~r~~~~~~~kIeVE---v~tleea~ea~~~g-aDiI~LDn~s---~e~l~~av~~~~~~~~-leaS---GGI~~ 249 (281)
T PRK06106 181 REAIRRARAGVGHLVKIEVE---VDTLDQLEEALELG-VDAVLLDNMT---PDTLREAVAIVAGRAI-TEAS---GRITP 249 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEE---eCCHHHHHHHHHcC-CCEEEeCCCC---HHHHHHHHHHhCCCce-EEEE---CCCCH
Confidence 36788888887533455443 45789999998776 5999999875 4666666665544333 3333 33444
Q ss_pred HHHHHHHhhhcCCccccCCCCC
Q 013317 389 TFIADLSVGLATGQIKTGAPCR 410 (445)
Q Consensus 389 ~~~~~la~a~~~~~~~~G~~~~ 410 (445)
..+..+|- ++..++-.|.+.-
T Consensus 250 ~ni~~yA~-tGVD~Is~Galth 270 (281)
T PRK06106 250 ETAPAIAA-SGVDLISVGWLTH 270 (281)
T ss_pred HHHHHHHh-cCCCEEEeChhhc
Confidence 45556543 5788888887653
No 202
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=34.22 E-value=2.5e+02 Score=22.71 Aligned_cols=48 Identities=10% Similarity=0.200 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHc--CCcEEecCC
Q 013317 335 PKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRA--GWGVMASHR 382 (445)
Q Consensus 335 ~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~--g~~~~~~~~ 382 (445)
.+++.+.+.....|+|-+.......+..+.++++.+++. ++.+++|..
T Consensus 40 ~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~ 89 (121)
T PF02310_consen 40 PEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGP 89 (121)
T ss_dssp HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 577888888889999999998888999999999998887 778888874
No 203
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=33.99 E-value=3.1e+02 Score=26.28 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=36.8
Q ss_pred eEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCC
Q 013317 323 VQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRS 383 (445)
Q Consensus 323 ~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~ 383 (445)
+||+.|-. +++-++.+++.+ ++++| -+.|.. .-++..+++.+|.++++-|+.
T Consensus 76 ~plsiDT~---~~~vi~~al~~G-~~iIN----sis~~~-~~~~~~l~~~~~~~vV~m~~~ 127 (257)
T TIGR01496 76 VPISVDTY---RAEVARAALEAG-ADIIN----DVSGGQ-DPAMLEVAAEYGVPLVLMHMR 127 (257)
T ss_pred CeEEEeCC---CHHHHHHHHHcC-CCEEE----ECCCCC-CchhHHHHHHcCCcEEEEeCC
Confidence 99999943 588899999884 66655 112222 346777788999999888854
No 204
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=33.77 E-value=5.2e+02 Score=26.35 Aligned_cols=95 Identities=11% Similarity=0.144 Sum_probs=56.7
Q ss_pred ccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccC----ccccHHHHHHHHHHHHHcC--CcEEe
Q 013317 306 QDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN----QIGSVTESIEAVKMAKRAG--WGVMA 379 (445)
Q Consensus 306 ~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~----k~GGit~a~~i~~~A~~~g--~~~~~ 379 (445)
.-+++.+++|++.++ +||+--+. .++++++.+.+.+ +|+|.+-.. .-++.+.+.-+.+++++.+ +++++
T Consensus 214 ~~~w~~i~~l~~~~~--~PvivKGv--~~~eda~~a~~~G-vd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~ 288 (367)
T TIGR02708 214 KLSPRDIEEIAGYSG--LPVYVKGP--QCPEDADRALKAG-ASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVF 288 (367)
T ss_pred CCCHHHHHHHHHhcC--CCEEEeCC--CCHHHHHHHHHcC-cCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEe
Confidence 346788999999988 89877764 3588898888755 555543321 1123333444455555553 78766
Q ss_pred cCCCCCChhHHHHHHHhhhcCCccccCCC
Q 013317 380 SHRSGETEDTFIADLSVGLATGQIKTGAP 408 (445)
Q Consensus 380 ~~~~~et~~~~~~~la~a~~~~~~~~G~~ 408 (445)
.+. .-+.....- |+++++..+..|-|
T Consensus 289 dGG-Ir~g~Dv~K--aLalGAd~V~igR~ 314 (367)
T TIGR02708 289 DSG-VRRGQHVFK--ALASGADLVALGRP 314 (367)
T ss_pred eCC-cCCHHHHHH--HHHcCCCEEEEcHH
Confidence 653 333333333 34467777777665
No 205
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=33.73 E-value=6.1e+02 Score=27.03 Aligned_cols=129 Identities=12% Similarity=0.251 Sum_probs=75.5
Q ss_pred CCCcChHHHHHHHHHhhhcCCeeEEECCCC---ccCHHHHHHHHHHhCC-------ceE-EEeccccccCHHHHHHHHhc
Q 013317 276 SQKVSGDGLKNVYRSFISDHPIVSIEDPFD---QDDWEHYAELTGKIGR-------HVQ-IVGDDLLVTNPKRVEKAIKE 344 (445)
Q Consensus 276 n~~~t~~~~i~~~~~~~~~~~i~~iEdP~~---~~D~~~~~~L~~~~~~-------~~p-I~gde~~~~~~~~~~~~i~~ 344 (445)
+..++.+|-+++ .+.|++.++..||=-+| ++|.+..+++.+.... -+| |++ +......++...++.
T Consensus 100 gv~fs~eeKi~I-a~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a--~~R~~~~dId~a~~a 176 (503)
T PLN03228 100 GGSLTPPQKLEI-ARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICG--IARCKKRDIEAAWEA 176 (503)
T ss_pred CCCCCHHHHHHH-HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcccccccccccceEEee--ecccCHhhHHHHHHh
Confidence 346889998887 56689999999998665 4566667777654321 012 221 111235677776654
Q ss_pred C---CCCEEEecc-------------CccccHHHHHHHHHHHHHcCCc-EEecC-CCCCChhHHHHHH---HhhhcCCcc
Q 013317 345 K---TCNALLLKV-------------NQIGSVTESIEAVKMAKRAGWG-VMASH-RSGETEDTFIADL---SVGLATGQI 403 (445)
Q Consensus 345 ~---a~d~v~ik~-------------~k~GGit~a~~i~~~A~~~g~~-~~~~~-~~~et~~~~~~~l---a~a~~~~~~ 403 (445)
. ..+.+.+-+ ++-.-+..+.+++++|+++|.. +.+++ ....+...+...+ +...++..+
T Consensus 177 ~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~Gad~I 256 (503)
T PLN03228 177 LKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAGATSV 256 (503)
T ss_pred hcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcCCCEE
Confidence 2 223344322 2223455567788899999985 66677 2334444444443 444567777
Q ss_pred ccCC
Q 013317 404 KTGA 407 (445)
Q Consensus 404 ~~G~ 407 (445)
.+.+
T Consensus 257 ~l~D 260 (503)
T PLN03228 257 GIAD 260 (503)
T ss_pred EEec
Confidence 6544
No 206
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=33.48 E-value=4.5e+02 Score=25.39 Aligned_cols=92 Identities=16% Similarity=0.176 Sum_probs=48.2
Q ss_pred CCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHh----cCCCCEEEeccCcccc--HH-------HHHHHHHHH
Q 013317 304 FDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIK----EKTCNALLLKVNQIGS--VT-------ESIEAVKMA 370 (445)
Q Consensus 304 ~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~----~~a~d~v~ik~~k~GG--it-------~a~~i~~~A 370 (445)
....+.+-++++ .+++ .||.-..-...+++++...++ .+.-+++. +.+|+ .+ ++..+..+-
T Consensus 119 ~~~~n~~LL~~~-a~~g--kPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L---~~rG~~t~~~Y~~~~vdl~~i~~lk 192 (266)
T PRK13398 119 RNMQNFELLKEV-GKTK--KPILLKRGMSATLEEWLYAAEYIMSEGNENVVL---CERGIRTFETYTRNTLDLAAVAVIK 192 (266)
T ss_pred ccccCHHHHHHH-hcCC--CcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEE---EECCCCCCCCCCHHHHHHHHHHHHH
Confidence 334555556666 4555 777555443335777765533 33334443 45544 21 344444455
Q ss_pred HHcCCcEEe--cCCCCCCh-hHHHHHHHhhhcCC
Q 013317 371 KRAGWGVMA--SHRSGETE-DTFIADLSVGLATG 401 (445)
Q Consensus 371 ~~~g~~~~~--~~~~~et~-~~~~~~la~a~~~~ 401 (445)
+..++++++ +|..+... ....+-.|++.|+.
T Consensus 193 ~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~ 226 (266)
T PRK13398 193 ELSHLPIIVDPSHATGRRELVIPMAKAAIAAGAD 226 (266)
T ss_pred hccCCCEEEeCCCcccchhhHHHHHHHHHHcCCC
Confidence 556899888 66554322 23344556666665
No 207
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=33.29 E-value=4.2e+02 Score=27.38 Aligned_cols=121 Identities=17% Similarity=0.067 Sum_probs=66.1
Q ss_pred ChHHHHHHHHHhhhcCCeeEEEC--CCC-ccCHHHHHHHHHHhCCceEEEecccccc-CHHHHHHHHhcCCCCEEEeccC
Q 013317 280 SGDGLKNVYRSFISDHPIVSIED--PFD-QDDWEHYAELTGKIGRHVQIVGDDLLVT-NPKRVEKAIKEKTCNALLLKVN 355 (445)
Q Consensus 280 t~~~~i~~~~~~~~~~~i~~iEd--P~~-~~D~~~~~~L~~~~~~~~pI~gde~~~~-~~~~~~~~i~~~a~d~v~ik~~ 355 (445)
+.++.++.+.+ +.+.++.|||= |.. ....+..++|++..+ ...|+.|=-..- ...++..+.+.+ +|++.+--.
T Consensus 14 ~~~~~~~~~~~-~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~~~-~~~ii~D~kl~d~g~~~v~~a~~aG-AdgV~v~g~ 90 (430)
T PRK07028 14 ELDRAVEIAKE-AVAGGADWIEAGTPLIKSEGMNAIRTLRKNFP-DHTIVADMKTMDTGAIEVEMAAKAG-ADIVCILGL 90 (430)
T ss_pred CHHHHHHHHHH-HHhcCCcEEEeCCHHHHHhhHHHHHHHHHHCC-CCEEEEEeeeccchHHHHHHHHHcC-CCEEEEecC
Confidence 45677776544 34578999985 221 234556677776654 133455511100 012566666655 466664311
Q ss_pred ccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhcCCccccC
Q 013317 356 QIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTG 406 (445)
Q Consensus 356 k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G 406 (445)
. ......++++.|+++|+.++++..+.++.... +..+...++.++.++
T Consensus 91 -~-~~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~-~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 91 -A-DDSTIEDAVRAARKYGVRLMADLINVPDPVKR-AVELEELGVDYINVH 138 (430)
T ss_pred -C-ChHHHHHHHHHHHHcCCEEEEEecCCCCHHHH-HHHHHhcCCCEEEEE
Confidence 1 11234678888999999987753333443332 233445577887754
No 208
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=32.97 E-value=1.1e+02 Score=30.85 Aligned_cols=44 Identities=14% Similarity=0.196 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEecc
Q 013317 309 WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 354 (445)
Q Consensus 309 ~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~ 354 (445)
++..+++++.++.++||+|--- +++.+++.+++..+ +|.|++--
T Consensus 276 l~~v~~l~~~~~~~ipIig~GG-I~s~eda~e~l~aG-Ad~V~v~~ 319 (344)
T PRK05286 276 TEVIRRLYKELGGRLPIIGVGG-IDSAEDAYEKIRAG-ASLVQIYS 319 (344)
T ss_pred HHHHHHHHHHhCCCCCEEEECC-CCCHHHHHHHHHcC-CCHHHHHH
Confidence 3455666676633377743333 45688888888744 77766543
No 209
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=32.70 E-value=2e+02 Score=26.63 Aligned_cols=92 Identities=18% Similarity=0.209 Sum_probs=43.5
Q ss_pred eEEEeccccccCHHHHHHHHhcCCCCEE--EeccC--c---cc----cHHHHHHHHHHHHHcCCcEEecCCCC-C-----
Q 013317 323 VQIVGDDLLVTNPKRVEKAIKEKTCNAL--LLKVN--Q---IG----SVTESIEAVKMAKRAGWGVMASHRSG-E----- 385 (445)
Q Consensus 323 ~pI~gde~~~~~~~~~~~~i~~~a~d~v--~ik~~--k---~G----Git~a~~i~~~A~~~g~~~~~~~~~~-e----- 385 (445)
..++|... ..+++-++++.+.-.-+-+ .+|+- + -| .-.+..+.++..++.|..-++=|... +
T Consensus 98 ~vvigs~~-l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g 176 (234)
T cd04732 98 RVIIGTAA-VKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSG 176 (234)
T ss_pred EEEECchH-HhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCC
Confidence 44566665 3556666666554322111 22221 0 01 12245566666777777654444211 1
Q ss_pred ChhHHHHHHHhhhcCCccccCCCCCchhHH
Q 013317 386 TEDTFIADLSVGLATGQIKTGAPCRSERLA 415 (445)
Q Consensus 386 t~~~~~~~la~a~~~~~~~~G~~~~~er~~ 415 (445)
.....+-.+.-.+..+.+..|+....+.+.
T Consensus 177 ~~~~~i~~i~~~~~ipvi~~GGi~~~~di~ 206 (234)
T cd04732 177 PNFELYKELAAATGIPVIASGGVSSLDDIK 206 (234)
T ss_pred CCHHHHHHHHHhcCCCEEEecCCCCHHHHH
Confidence 112334444444455666677766555443
No 210
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=32.39 E-value=4.4e+02 Score=24.98 Aligned_cols=82 Identities=15% Similarity=0.146 Sum_probs=50.6
Q ss_pred CCeeEEECCCCccC-----HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhc--CCCCEEEeccCccccHHHHHHHH
Q 013317 295 HPIVSIEDPFDQDD-----WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKE--KTCNALLLKVNQIGSVTESIEAV 367 (445)
Q Consensus 295 ~~i~~iEdP~~~~D-----~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~--~a~d~v~ik~~k~GGit~a~~i~ 367 (445)
.++.++-.|-.... ++.+.+++++-. +--+|= + ..+++.+.++++. ...+++|+..+-+---. ...+.
T Consensus 111 iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~--ir~iGv-S-~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~-~~~~~ 185 (285)
T cd06660 111 IDLYLLHWPDPDTPDIEETLRALEELVKEGK--IRAIGV-S-NFSAEQLEEALAAAGVPPAVNQVEYNLLDRQA-EEELL 185 (285)
T ss_pred eeEEEecCCCCCCCCHHHHHHHHHHHHHcCC--ccEEEe-e-CCCHHHHHHHHHhhCCCceEEecccCcccCch-HHHHH
Confidence 45667777754332 344444444433 433332 1 2347788888877 78999999887543211 12788
Q ss_pred HHHHHcCCcEEecC
Q 013317 368 KMAKRAGWGVMASH 381 (445)
Q Consensus 368 ~~A~~~g~~~~~~~ 381 (445)
.+|+++|+.++...
T Consensus 186 ~~~~~~gi~v~~~~ 199 (285)
T cd06660 186 PYCREHGIGVIAYS 199 (285)
T ss_pred HHHHHcCcEEEEec
Confidence 99999999986533
No 211
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=32.26 E-value=5.8e+02 Score=26.26 Aligned_cols=110 Identities=13% Similarity=0.118 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHhhhcCCeeEEECCCC---ccCHHHHHHHHHHhCCceEEEeccccccCHHHH-HHHHhcCCCCEEEeccC
Q 013317 280 SGDGLKNVYRSFISDHPIVSIEDPFD---QDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRV-EKAIKEKTCNALLLKVN 355 (445)
Q Consensus 280 t~~~~i~~~~~~~~~~~i~~iEdP~~---~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~-~~~i~~~a~d~v~ik~~ 355 (445)
+.+++++... .+.++...|+|=-.+ ..-.+..++|++..+ +.+|..|=- +.++... .+.+..-.+|++.+...
T Consensus 183 ~~~~A~~i~~-~l~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~~-~~~I~~DLK-~~Di~~~vv~~~a~aGAD~vTVH~e 259 (391)
T PRK13307 183 DLEEVERVLS-QLPKSDHIIIEAGTPLIKKFGLEVISKIREVRP-DAFIVADLK-TLDTGNLEARMAADATADAVVISGL 259 (391)
T ss_pred CHHHHHHHHH-hcccccceEEEECHHHHHHhCHHHHHHHHHhCC-CCeEEEEec-ccChhhHHHHHHHhcCCCEEEEecc
Confidence 5678887644 466665668885543 233556678887732 277888843 4455555 44445567899998873
Q ss_pred ccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHH
Q 013317 356 QIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADL 394 (445)
Q Consensus 356 k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~l 394 (445)
++.....+..+.++++|+.+++.-...++....+..+
T Consensus 260 --a~~~ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l 296 (391)
T PRK13307 260 --APISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESL 296 (391)
T ss_pred --CCHHHHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHh
Confidence 5666788899999999999877322224444444433
No 212
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=32.21 E-value=2.1e+02 Score=28.05 Aligned_cols=96 Identities=13% Similarity=0.050 Sum_probs=58.2
Q ss_pred CcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCcc
Q 013317 278 KVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 357 (445)
Q Consensus 278 ~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~ 357 (445)
+.-.++-++.+.+.-+++++-.+=|=..+++.+. +.+-.+ +-=+|=-.+ .+.+=++.+ .+.-..|++|=.+.
T Consensus 69 G~G~eeGL~iL~~vk~~~glpvvTeV~~~~q~~~---vae~~D--ilQIgAr~~-rqtdLL~a~--~~tgkpV~lKkGq~ 140 (290)
T PLN03033 69 GPGMAEGLKILEKVKVAYDLPIVTDVHESSQCEA---VGKVAD--IIQIPAFLC-RQTDLLVAA--AKTGKIINIKKGQF 140 (290)
T ss_pred CCCHHHHHHHHHHHHHHHCCceEEeeCCHHHHHH---HHhhCc--EEeeCcHHH-HHHHHHHHH--HccCCeEEeCCCCC
Confidence 3444566777776666788766655554444333 333333 332455443 332222223 23456899999999
Q ss_pred ccHHHHHHHHHHHHHcCC-cEEecC
Q 013317 358 GSVTESIEAVKMAKRAGW-GVMASH 381 (445)
Q Consensus 358 GGit~a~~i~~~A~~~g~-~~~~~~ 381 (445)
..+.+++-++++..+.|- .+++-+
T Consensus 141 ~t~~e~~~aaeki~~~GN~~viLcE 165 (290)
T PLN03033 141 CAPSVMRNSAEKVRLAGNPNVMVCE 165 (290)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEe
Confidence 999999999999888864 344444
No 213
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=32.06 E-value=1.3e+02 Score=28.19 Aligned_cols=61 Identities=8% Similarity=0.128 Sum_probs=40.6
Q ss_pred cCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcC
Q 013317 307 DDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAG 374 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g 374 (445)
.+++..+++++.++ +||+++-- +++.++++++++.+ ++.+.+-..-.....-+.+ +++.++
T Consensus 58 ~~~~~i~~i~~~~~--~pv~~~GG-I~s~~d~~~~l~~G-~~~v~ig~~~~~~p~~~~~---i~~~~~ 118 (243)
T cd04731 58 TMLDVVERVAEEVF--IPLTVGGG-IRSLEDARRLLRAG-ADKVSINSAAVENPELIRE---IAKRFG 118 (243)
T ss_pred ccHHHHHHHHHhCC--CCEEEeCC-CCCHHHHHHHHHcC-CceEEECchhhhChHHHHH---HHHHcC
Confidence 37888999999987 88755544 46799999999876 7777765433333333333 444444
No 214
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=31.85 E-value=5.2e+02 Score=28.81 Aligned_cols=98 Identities=12% Similarity=0.184 Sum_probs=68.8
Q ss_pred CcChHHHHHHHHHhhhcCCeeEE-ECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCc
Q 013317 278 KVSGDGLKNVYRSFISDHPIVSI-EDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 356 (445)
Q Consensus 278 ~~t~~~~i~~~~~~~~~~~i~~i-EdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k 356 (445)
..++.++.+.|.+. -.-.|..+ |..+-..+++.++++++.++ +||.--|.. -++.++.+.-.. .+|+|.+=+.-
T Consensus 69 ~~d~~~~a~~y~~~-GA~aiSVlTe~~~F~Gs~~~l~~vr~~v~--~PvLrKDFI-id~~QI~ea~~~-GADavLLI~~~ 143 (695)
T PRK13802 69 IPDPAALAREYEQG-GASAISVLTEGRRFLGSLDDFDKVRAAVH--IPVLRKDFI-VTDYQIWEARAH-GADLVLLIVAA 143 (695)
T ss_pred CCCHHHHHHHHHHc-CCcEEEEecCcCcCCCCHHHHHHHHHhCC--CCEEecccc-CCHHHHHHHHHc-CCCEeehhHhh
Confidence 34666665544321 11225555 55666789999999999988 999777764 457777766443 46888887765
Q ss_pred cccHHHHHHHHHHHHHcCCcEEecC
Q 013317 357 IGSVTESIEAVKMAKRAGWGVMASH 381 (445)
Q Consensus 357 ~GGit~a~~i~~~A~~~g~~~~~~~ 381 (445)
.+ -.+..++.++|+..|+.+.+--
T Consensus 144 L~-~~~l~~l~~~a~~lGme~LvEv 167 (695)
T PRK13802 144 LD-DAQLKHLLDLAHELGMTVLVET 167 (695)
T ss_pred cC-HHHHHHHHHHHHHcCCeEEEEe
Confidence 54 3578899999999999987655
No 215
>PRK06801 hypothetical protein; Provisional
Probab=31.78 E-value=2.2e+02 Score=27.90 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=45.4
Q ss_pred HHHHhCCceEE--EeccccccCHHHHHHHHhcCCCCEEEeccCccc---cHHHHHHHHHHHHHcCCcE--EecC
Q 013317 315 LTGKIGRHVQI--VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG---SVTESIEAVKMAKRAGWGV--MASH 381 (445)
Q Consensus 315 L~~~~~~~~pI--~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~G---Git~a~~i~~~A~~~g~~~--~~~~ 381 (445)
+.++.+ +|| =.|. ..+.+.+++.++.+ ++.|++|-+..- -+..++++.++|+.+|+.+ -+|+
T Consensus 69 ~a~~~~--vpV~lHlDH--~~~~e~i~~Ai~~G-ftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~ 137 (286)
T PRK06801 69 EAARHD--IPVVLNLDH--GLHFEAVVRALRLG-FSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGA 137 (286)
T ss_pred HHHHCC--CCEEEECCC--CCCHHHHHHHHHhC-CcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCc
Confidence 334444 554 5675 35688899999876 699999988764 4667788999999999887 4455
No 216
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=31.73 E-value=3.7e+02 Score=23.91 Aligned_cols=98 Identities=19% Similarity=0.333 Sum_probs=57.3
Q ss_pred HHHHHHHHhcCCCCEEEeccCcccc---HHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhcCCccccCCCCCc
Q 013317 335 PKRVEKAIKEKTCNALLLKVNQIGS---VTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRS 411 (445)
Q Consensus 335 ~~~~~~~i~~~a~d~v~ik~~k~GG---it~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~~~ 411 (445)
.+.+.++++.+ ++.+++....... ...+.++.++|+.++.++++... .++|..+++.-+-++.-. .
T Consensus 15 ~~~l~~~~~~g-v~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~liin~~---------~~la~~~~~dGvHl~~~~-~ 83 (180)
T PF02581_consen 15 LEQLEAALAAG-VDLVQLREKDLSDEELLELARRLAELCQKYGVPLIINDR---------VDLALELGADGVHLGQSD-L 83 (180)
T ss_dssp HHHHHHHHHTT--SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGCEEEES----------HHHHHHCT-SEEEEBTTS-S
T ss_pred HHHHHHHHHCC-CcEEEEcCCCCCccHHHHHHHHHHHHhhcceEEEEecCC---------HHHHHhcCCCEEEecccc-c
Confidence 45566777777 9999998865332 34577888899999999988774 677777666555444321 1
Q ss_pred hhHHHHHH----------------HHHHHHHhCCCccccCccCCCCCCC
Q 013317 412 ERLAKYNQ----------------LLRIEEELGPAAIYAGTKFRTPVQP 444 (445)
Q Consensus 412 er~~k~n~----------------ll~i~~~l~~~~~~~~~~~~~~~~~ 444 (445)
.....++ =++...+++-..++.++-|.|+-.|
T Consensus 84 -~~~~~r~~~~~~~~ig~S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~ 131 (180)
T PF02581_consen 84 -PPAEARKLLGPDKIIGASCHSLEEAREAEELGADYVFLGPVFPTSSKP 131 (180)
T ss_dssp -SHHHHHHHHTTTSEEEEEESSHHHHHHHHHCTTSEEEEETSS--SSSS
T ss_pred -chHHhhhhcccceEEEeecCcHHHHHHhhhcCCCEEEECCccCCCCCc
Confidence 1111111 1333345677777888888776544
No 217
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=31.69 E-value=2.9e+02 Score=26.61 Aligned_cols=95 Identities=17% Similarity=0.288 Sum_probs=67.1
Q ss_pred CcChHHHHHHHHHhhhcCC---eeEE-ECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEec
Q 013317 278 KVSGDGLKNVYRSFISDHP---IVSI-EDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 278 ~~t~~~~i~~~~~~~~~~~---i~~i-EdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
..++.+.++.| ++++ |..+ |.++-...++.++.+++.+. +||.--+.. -++..+...- .-.+|+|++=
T Consensus 65 d~dp~~ia~~Y----e~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~--~PvL~KDFi-iD~yQI~~Ar-~~GADavLLI 136 (254)
T COG0134 65 DFDPVEIAKAY----EEGGAAAISVLTDPKYFQGSFEDLRAVRAAVD--LPVLRKDFI-IDPYQIYEAR-AAGADAVLLI 136 (254)
T ss_pred cCCHHHHHHHH----HHhCCeEEEEecCccccCCCHHHHHHHHHhcC--CCeeeccCC-CCHHHHHHHH-HcCcccHHHH
Confidence 35666654444 4453 5555 66677889999999999999 999666664 4577776553 3357787776
Q ss_pred cCccccHHHHHHHHHHHHHcCCcEEecC
Q 013317 354 VNQIGSVTESIEAVKMAKRAGWGVMASH 381 (445)
Q Consensus 354 ~~k~GGit~a~~i~~~A~~~g~~~~~~~ 381 (445)
+.-.. =.++.++.+.|+..|+.+.+.-
T Consensus 137 ~~~L~-~~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 137 VAALD-DEQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred HHhcC-HHHHHHHHHHHHHcCCeeEEEE
Confidence 65543 3568999999999999987654
No 218
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=31.66 E-value=5.4e+02 Score=25.78 Aligned_cols=93 Identities=16% Similarity=0.208 Sum_probs=60.8
Q ss_pred HHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEE-EeccccccCHHHHHHHHhcCCCCEEEec-c-CccccH
Q 013317 284 LKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQI-VGDDLLVTNPKRVEKAIKEKTCNALLLK-V-NQIGSV 360 (445)
Q Consensus 284 ~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI-~gde~~~~~~~~~~~~i~~~a~d~v~ik-~-~k~GGi 360 (445)
++..+..++.+-+-..+.+|.-+.-+..+....+..+ +.+ .-| . .+++.+++.+.. ..++|.+. + +-.|.+
T Consensus 79 ai~~~~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G--~~v~~vd-~--~d~~~l~~~i~~-~tklv~le~P~NP~~~~ 152 (366)
T PRK08247 79 AIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWN--VRFVYVN-T--ASLKAIEQAITP-NTKAIFIETPTNPLMQE 152 (366)
T ss_pred HHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHhhccC--ceEEEEC-C--CCHHHHHHhccc-CceEEEEECCCCCCCcH
Confidence 3433344555555667888887666666666555565 443 333 2 357888887754 34566542 2 336888
Q ss_pred HHHHHHHHHHHHcCCcEEecCC
Q 013317 361 TESIEAVKMAKRAGWGVMASHR 382 (445)
Q Consensus 361 t~a~~i~~~A~~~g~~~~~~~~ 382 (445)
.+..+++++|+++|+.+++...
T Consensus 153 ~dl~~I~~la~~~g~~lIvD~t 174 (366)
T PRK08247 153 TDIAAIAKIAKKHGLLLIVDNT 174 (366)
T ss_pred HHHHHHHHHHHHcCCEEEEECC
Confidence 9999999999999998876653
No 219
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=31.63 E-value=1.3e+02 Score=27.52 Aligned_cols=70 Identities=19% Similarity=0.184 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCceEEEec--------ccccc-CHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEe
Q 013317 309 WEHYAELTGKIGRHVQIVGD--------DLLVT-NPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMA 379 (445)
Q Consensus 309 ~~~~~~L~~~~~~~~pI~gd--------e~~~~-~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~ 379 (445)
.+..+.+++.++ +||+|= +.+.| +..++..+++.+ +|+|-+|-+.----..+.++++..+..+..+|.
T Consensus 21 ~~dI~aik~~v~--lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aG-adIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MA 97 (192)
T PF04131_consen 21 VEDIRAIKKAVD--LPIIGIIKRDYPDSDVYITPTLKEVDALAEAG-ADIIALDATDRPRPETLEELIREIKEKYQLVMA 97 (192)
T ss_dssp HHHHHHHHTTB---S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT--SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEE
T ss_pred HHHHHHHHHhcC--CCEEEEEeccCCCCCeEECCCHHHHHHHHHcC-CCEEEEecCCCCCCcCHHHHHHHHHHhCcEEee
Confidence 344555555555 665441 22333 456666666543 677777754322225555666666666655554
Q ss_pred cC
Q 013317 380 SH 381 (445)
Q Consensus 380 ~~ 381 (445)
.+
T Consensus 98 Di 99 (192)
T PF04131_consen 98 DI 99 (192)
T ss_dssp E-
T ss_pred ec
Confidence 44
No 220
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=31.61 E-value=4.1e+02 Score=26.41 Aligned_cols=92 Identities=14% Similarity=0.251 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhhcCCeeEEEC----CCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCc-
Q 013317 282 DGLKNVYRSFISDHPIVSIED----PFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ- 356 (445)
Q Consensus 282 ~~~i~~~~~~~~~~~i~~iEd----P~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k- 356 (445)
+++++.+.+++++.++.-+=- -++++.+..+.++.++.+ ..++.|-+ -.-+.+.++.+ ...||+++
T Consensus 117 ~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g--~~vilD~S----g~~L~~~L~~~---P~lIKPN~~ 187 (310)
T COG1105 117 EQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQG--AKVILDTS----GEALLAALEAK---PWLIKPNRE 187 (310)
T ss_pred HHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcC--CeEEEECC----hHHHHHHHccC---CcEEecCHH
Confidence 445666666667777766655 456677888888888877 88888843 57777888766 78888874
Q ss_pred ---------cccHHHHHHHHHHHHHcCCcEEecCC
Q 013317 357 ---------IGSVTESIEAVKMAKRAGWGVMASHR 382 (445)
Q Consensus 357 ---------~GGit~a~~i~~~A~~~g~~~~~~~~ 382 (445)
.-...+.++.++.....|++.++=++
T Consensus 188 EL~~~~g~~~~~~~d~i~~a~~l~~~g~~~ViVSl 222 (310)
T COG1105 188 ELEALFGRELTTLEDVIKAARELLAEGIENVIVSL 222 (310)
T ss_pred HHHHHhCCCCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 45566777877777778888765553
No 221
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=31.07 E-value=78 Score=31.35 Aligned_cols=43 Identities=12% Similarity=0.546 Sum_probs=35.2
Q ss_pred cCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEe
Q 013317 307 DDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
-+++..+++++.++ +||++.-- +++++++.++++...+|+|++
T Consensus 179 ~~~~~i~~i~~~~~--ipvi~nGg-I~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 179 ANWDIIARVKQAVR--IPVIGNGD-IFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred hhHHHHHHHHHcCC--CcEEEeCC-CCCHHHHHHHHHhhCCCEEEE
Confidence 36788889999888 88855544 567999999998888999987
No 222
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=31.03 E-value=5.3e+02 Score=26.05 Aligned_cols=92 Identities=9% Similarity=0.141 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEecc--Ccc--ccHHHHHHHHHHHHHc--CCcEEecC
Q 013317 308 DWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV--NQI--GSVTESIEAVKMAKRA--GWGVMASH 381 (445)
Q Consensus 308 D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~--~k~--GGit~a~~i~~~A~~~--g~~~~~~~ 381 (445)
+++.+++|++.++ +||+.-+. .++++++.+.+. .+|+|.+.- .+. ++.+...-+.+++++. .+++++..
T Consensus 209 ~~~~l~~lr~~~~--~PvivKgv--~~~~dA~~a~~~-G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dG 283 (351)
T cd04737 209 SPADIEFIAKISG--LPVIVKGI--QSPEDADVAINA-GADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDS 283 (351)
T ss_pred CHHHHHHHHHHhC--CcEEEecC--CCHHHHHHHHHc-CCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEEC
Confidence 5777889999988 88866654 468888888765 567776631 111 3444444455566655 48876555
Q ss_pred CCCCChhHHHHHHHhhhcCCccccCC
Q 013317 382 RSGETEDTFIADLSVGLATGQIKTGA 407 (445)
Q Consensus 382 ~~~et~~~~~~~la~a~~~~~~~~G~ 407 (445)
. ..+.....-.|+ +|+..+..|-
T Consensus 284 G-Ir~g~Di~kaLa--lGA~~V~iGr 306 (351)
T cd04737 284 G-VRRGEHVFKALA--SGADAVAVGR 306 (351)
T ss_pred C-CCCHHHHHHHHH--cCCCEEEECH
Confidence 3 444444444444 4566666554
No 223
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=30.72 E-value=4.6e+02 Score=24.66 Aligned_cols=99 Identities=12% Similarity=0.215 Sum_probs=55.4
Q ss_pred HHHHHHHHhcCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCee-EEECCCCc--
Q 013317 230 ELLKTAIAKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIV-SIEDPFDQ-- 306 (445)
Q Consensus 230 ~~v~~ai~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~-~iEdP~~~-- 306 (445)
+.++++.+.-| +++-+.+|+-....+.. .|. .+..+++.+.++. ++++++. .|=-.+..
T Consensus 113 ~~l~~~~~~fg--~~ivvslD~~~g~v~~~---gw~---------~~~~~~~~~~~~~----~~~~g~~~ii~tdi~~dG 174 (234)
T PRK13587 113 DWLKEMAHTFP--GRIYLSVDAYGEDIKVN---GWE---------EDTELNLFSFVRQ----LSDIPLGGIIYTDIAKDG 174 (234)
T ss_pred HHHHHHHHHcC--CCEEEEEEeeCCEEEec---CCc---------ccCCCCHHHHHHH----HHHcCCCEEEEecccCcC
Confidence 44555555544 46889999953322211 111 1234556665544 3344422 22222322
Q ss_pred ----cCHHHHHHHHHHhCCceEE-EeccccccCHHHHHHHHhcCCCCEEE
Q 013317 307 ----DDWEHYAELTGKIGRHVQI-VGDDLLVTNPKRVEKAIKEKTCNALL 351 (445)
Q Consensus 307 ----~D~~~~~~L~~~~~~~~pI-~gde~~~~~~~~~~~~i~~~a~d~v~ 351 (445)
-|++-+.++++.++ +|| ++.- +++++++.++.+.+ ++.+.
T Consensus 175 t~~G~~~~li~~l~~~~~--ipvi~~GG--i~s~edi~~l~~~G-~~~vi 219 (234)
T PRK13587 175 KMSGPNFELTGQLVKATT--IPVIASGG--IRHQQDIQRLASLN-VHAAI 219 (234)
T ss_pred CCCccCHHHHHHHHHhCC--CCEEEeCC--CCCHHHHHHHHHcC-CCEEE
Confidence 37888999998877 776 3332 45799999998764 44444
No 224
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=30.66 E-value=2e+02 Score=29.13 Aligned_cols=52 Identities=17% Similarity=0.300 Sum_probs=42.3
Q ss_pred eEEEeccccccCHHHHHHHHhcCCCCEEEeccCccc----------cHHHHHHHHHHHHHcCCcE
Q 013317 323 VQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG----------SVTESIEAVKMAKRAGWGV 377 (445)
Q Consensus 323 ~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~G----------Git~a~~i~~~A~~~g~~~ 377 (445)
+-|=.|. ..+.+.+++.++.+ .+.|++|-+..- =|..+++++++|+++|+.+
T Consensus 78 VaLHLDH--g~~~e~i~~Ai~~G-FtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsV 139 (347)
T PRK13399 78 ICLHQDH--GNSPATCQSAIRSG-FTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSV 139 (347)
T ss_pred EEEECCC--CCCHHHHHHHHhcC-CCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeE
Confidence 3345665 35789999999887 599999999764 5788999999999999887
No 225
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.59 E-value=3.5e+02 Score=26.58 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=51.3
Q ss_pred HHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhH
Q 013317 310 EHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+..++++++.+...+|.-+ +.+.+++.++++.+ +|++++|=+. ..++++++.+.+. .+.+ -- +|.....
T Consensus 185 ~av~~~r~~~~~~~kIeVE---v~tleea~~a~~ag-aDiImLDnms---pe~l~~av~~~~~-~~~l--ea-SGGI~~~ 253 (290)
T PRK06559 185 KAIAQARAYAPFVKMVEVE---VESLAAAEEAAAAG-ADIIMLDNMS---LEQIEQAITLIAG-RSRI--EC-SGNIDMT 253 (290)
T ss_pred HHHHHHHHhCCCCCeEEEE---CCCHHHHHHHHHcC-CCEEEECCCC---HHHHHHHHHHhcC-ceEE--EE-ECCCCHH
Confidence 5667777776422333222 45688888888765 5999988775 4555555554443 2332 22 2344444
Q ss_pred HHHHHHhhhcCCccccCCCCC
Q 013317 390 FIADLSVGLATGQIKTGAPCR 410 (445)
Q Consensus 390 ~~~~la~a~~~~~~~~G~~~~ 410 (445)
.+...|. ++..++-.|.+.-
T Consensus 254 ni~~yA~-tGVD~Is~galth 273 (290)
T PRK06559 254 TISRFRG-LAIDYVSSGSLTH 273 (290)
T ss_pred HHHHHHh-cCCCEEEeCcccc
Confidence 4455543 4777777777653
No 226
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=30.27 E-value=3.8e+02 Score=26.16 Aligned_cols=94 Identities=21% Similarity=0.195 Sum_probs=51.3
Q ss_pred HHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhH
Q 013317 310 EHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+..+++|+..+...-| |..+.|++++.++++.+ +|+|++|-+.. .++++++++...++ ++.+.. +|.....
T Consensus 176 ~Av~~aR~~~~~~~kI---EVEvesle~~~eAl~ag-aDiImLDNm~~---e~~~~av~~l~~~~-~~~lEa-SGgIt~~ 246 (280)
T COG0157 176 EAVRRARAAAPFTKKI---EVEVESLEEAEEALEAG-ADIIMLDNMSP---EELKEAVKLLGLAG-RALLEA-SGGITLE 246 (280)
T ss_pred HHHHHHHHhCCCCceE---EEEcCCHHHHHHHHHcC-CCEEEecCCCH---HHHHHHHHHhccCC-ceEEEE-eCCCCHH
Confidence 3455666655421112 22345678888877654 68888887754 55555555544343 444444 3443333
Q ss_pred HHHHHHhhhcCCccccCCCCCchh
Q 013317 390 FIADLSVGLATGQIKTGAPCRSER 413 (445)
Q Consensus 390 ~~~~la~a~~~~~~~~G~~~~~er 413 (445)
.+...| .++..++-.|.|.-+.+
T Consensus 247 ni~~yA-~tGVD~IS~galths~~ 269 (280)
T COG0157 247 NIREYA-ETGVDVISVGALTHSAP 269 (280)
T ss_pred HHHHHh-hcCCCEEEeCccccCCc
Confidence 334433 35777777777654433
No 227
>PRK13753 dihydropteroate synthase; Provisional
Probab=30.11 E-value=4.1e+02 Score=25.93 Aligned_cols=91 Identities=11% Similarity=0.143 Sum_probs=55.2
Q ss_pred CcChHHHHHHHHHhhhcCCeeEEE----------CCCCccCHHHHH-------HHHHHhCCceEEEeccccccCHHHHHH
Q 013317 278 KVSGDGLKNVYRSFISDHPIVSIE----------DPFDQDDWEHYA-------ELTGKIGRHVQIVGDDLLVTNPKRVEK 340 (445)
Q Consensus 278 ~~t~~~~i~~~~~~~~~~~i~~iE----------dP~~~~D~~~~~-------~L~~~~~~~~pI~gde~~~~~~~~~~~ 340 (445)
.++.+++++...+++++ +-.+|. +|++++ +.+. .|++. . +||.-|-. +++-++.
T Consensus 21 ~~~~d~a~~~a~~m~~~-GAdIIDIGgeSTrPga~~vs~e--eE~~Rv~pvI~~l~~~-~--~~ISIDT~---~~~va~~ 91 (279)
T PRK13753 21 RLDPAGAVTAAIEMLRV-GSDVVDVGPAASHPDARPVSPA--DEIRRIAPLLDALSDQ-M--HRVSIDSF---QPETQRY 91 (279)
T ss_pred CCCHHHHHHHHHHHHHC-CCcEEEECCCCCCCCCCcCCHH--HHHHHHHHHHHHHHhC-C--CcEEEECC---CHHHHHH
Confidence 35677888876666654 222221 233322 2333 33322 3 78877843 4788888
Q ss_pred HHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCC
Q 013317 341 AIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRS 383 (445)
Q Consensus 341 ~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~ 383 (445)
+++.+ +|+|| |++ |.+ --++...+..+++++++-|+.
T Consensus 92 al~aG-adiIN-DVs---g~~-d~~~~~vva~~~~~vVlmH~~ 128 (279)
T PRK13753 92 ALKRG-VGYLN-DIQ---GFP-DPALYPDIAEADCRLVVMHSA 128 (279)
T ss_pred HHHcC-CCEEE-eCC---CCC-chHHHHHHHHcCCCEEEEecC
Confidence 89887 57654 443 333 456677788899999999963
No 228
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=29.50 E-value=3.6e+02 Score=28.36 Aligned_cols=97 Identities=14% Similarity=0.267 Sum_probs=69.3
Q ss_pred CcChHHHHHHHHHhhhcCCeeEE-ECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCc
Q 013317 278 KVSGDGLKNVYRSFISDHPIVSI-EDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 356 (445)
Q Consensus 278 ~~t~~~~i~~~~~~~~~~~i~~i-EdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k 356 (445)
.+++.++++.|.. - ...|..+ |..+-..+++.++++++.++ +||.--+.. -++.++.+.-.. .+|+|.+=+.-
T Consensus 69 ~~d~~~~a~~y~~-g-A~aiSVlTe~~~F~Gs~~~l~~vr~~v~--~PvLrKDFi-id~~QI~ea~~~-GADavLLI~~~ 142 (454)
T PRK09427 69 DFDPAEIARVYKH-Y-ASAISVLTDEKYFQGSFDFLPIVRAIVT--QPILCKDFI-IDPYQIYLARYY-GADAILLMLSV 142 (454)
T ss_pred CCCHHHHHHHHHc-C-CeEEEEecCcCcCCCCHHHHHHHHHhCC--CCEEecccc-CCHHHHHHHHHc-CCCchhHHHHh
Confidence 4567777766522 1 2235544 66677889999999999988 999777764 557777766443 46888776665
Q ss_pred cccHHHHHHHHHHHHHcCCcEEecC
Q 013317 357 IGSVTESIEAVKMAKRAGWGVMASH 381 (445)
Q Consensus 357 ~GGit~a~~i~~~A~~~g~~~~~~~ 381 (445)
.+. ....++.++|+..|+.+.+-.
T Consensus 143 L~~-~~l~~l~~~a~~lGl~~lvEv 166 (454)
T PRK09427 143 LDD-EQYRQLAAVAHSLNMGVLTEV 166 (454)
T ss_pred CCH-HHHHHHHHHHHHcCCcEEEEE
Confidence 542 468889999999999997665
No 229
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=29.40 E-value=3.6e+02 Score=27.38 Aligned_cols=89 Identities=20% Similarity=0.239 Sum_probs=59.3
Q ss_pred HHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEec--cCccccHHHHHHH
Q 013317 289 RSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK--VNQIGSVTESIEA 366 (445)
Q Consensus 289 ~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik--~~k~GGit~a~~i 366 (445)
..++.+-+-..+.+|....-+..+..+..+.+ +.+.--+. .+++++++.++.+ ..+|.+- .+-.|.+.+..++
T Consensus 82 l~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~g--i~v~~vd~--~d~e~l~~ai~~~-t~lV~lesP~Nptg~~~di~~I 156 (380)
T PRK06176 82 FSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNG--LSCTIIDT--SDLSQIKKAIKPN-TKALYLETPSNPLLKITDLAQC 156 (380)
T ss_pred HHHcCCCCEEEEcCCChhHHHHHHHHHHHhcC--eEEEEcCC--CCHHHHHHhcCcC-ceEEEEECCCCCCceecCHHHH
Confidence 34555555566778876555566666666666 66532222 3578888877543 5666642 3456788899999
Q ss_pred HHHHHHcCCcEEecCC
Q 013317 367 VKMAKRAGWGVMASHR 382 (445)
Q Consensus 367 ~~~A~~~g~~~~~~~~ 382 (445)
+++|+++|+.+++...
T Consensus 157 ~~la~~~gi~vivD~t 172 (380)
T PRK06176 157 ASVAKDHGLLTIVDNT 172 (380)
T ss_pred HHHHHHcCCEEEEECC
Confidence 9999999999877653
No 230
>PRK09389 (R)-citramalate synthase; Provisional
Probab=29.04 E-value=7.2e+02 Score=26.35 Aligned_cols=126 Identities=15% Similarity=0.147 Sum_probs=79.6
Q ss_pred CCcChHHHHHHHHHhhhcCCeeEEECCC---CccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEec
Q 013317 277 QKVSGDGLKNVYRSFISDHPIVSIEDPF---DQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 277 ~~~t~~~~i~~~~~~~~~~~i~~iEdP~---~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
..++.++-+++ .+.|++.++..||=-+ +++|++..+++.+... +..|++-= .....++..+++.+ ++.+.+-
T Consensus 19 ~~~s~e~K~~i-a~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~~~-~~~i~a~~--r~~~~di~~a~~~g-~~~v~i~ 93 (488)
T PRK09389 19 VSLTPEEKLEI-ARKLDELGVDVIEAGSAITSEGEREAIKAVTDEGL-NAEICSFA--RAVKVDIDAALECD-VDSVHLV 93 (488)
T ss_pred CCcCHHHHHHH-HHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHhcCC-CcEEEeec--ccCHHHHHHHHhCC-cCEEEEE
Confidence 45788998887 4568899999999854 4567888888876432 25554431 23478888888755 4555544
Q ss_pred cCc-------------cccHHHHHHHHHHHHHcCCcEEecCCC-CCChhHHHHHH---HhhhcCCccccCC
Q 013317 354 VNQ-------------IGSVTESIEAVKMAKRAGWGVMASHRS-GETEDTFIADL---SVGLATGQIKTGA 407 (445)
Q Consensus 354 ~~k-------------~GGit~a~~i~~~A~~~g~~~~~~~~~-~et~~~~~~~l---a~a~~~~~~~~G~ 407 (445)
+.- ---+..+.+.+++|+++|+.+.++... ..+...+...+ +...++..+.+.+
T Consensus 94 ~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~D 164 (488)
T PRK09389 94 VPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCD 164 (488)
T ss_pred EccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 322 123455677788999999987666532 23344444433 3445677766444
No 231
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=28.89 E-value=3.7e+02 Score=27.07 Aligned_cols=87 Identities=13% Similarity=0.194 Sum_probs=55.2
Q ss_pred cCCeeEEECCCCccCHHHHHHHHHHhCCce-EEEeccccccCHHHHHHHHhcCCCCEEEec-c-CccccHHHHHHHHHHH
Q 013317 294 DHPIVSIEDPFDQDDWEHYAELTGKIGRHV-QIVGDDLLVTNPKRVEKAIKEKTCNALLLK-V-NQIGSVTESIEAVKMA 370 (445)
Q Consensus 294 ~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~-pI~gde~~~~~~~~~~~~i~~~a~d~v~ik-~-~k~GGit~a~~i~~~A 370 (445)
+-+-..+.+|-.+-.+..|..+.+..+-++ .+-.|+...-+++.+++.+..+ ...+.+- + +-.|.+.+..+++++|
T Consensus 105 ~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~-t~lv~i~~~~n~tG~~~~~~~i~~~~ 183 (398)
T TIGR03392 105 PGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTPR-TRILALGQMSNVTGGCPDLARAITLA 183 (398)
T ss_pred CCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhccC-ceEEEEECccccccccCCHHHHHHHH
Confidence 334556777766555666777766655222 2212322223578888887554 4555543 2 4678899999999999
Q ss_pred HHcCCcEEecC
Q 013317 371 KRAGWGVMASH 381 (445)
Q Consensus 371 ~~~g~~~~~~~ 381 (445)
+++|+.+++..
T Consensus 184 ~~~~~~~ivD~ 194 (398)
T TIGR03392 184 HQYGAVVVVDG 194 (398)
T ss_pred HHcCCEEEEEh
Confidence 99998876554
No 232
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=28.86 E-value=5.7e+02 Score=25.62 Aligned_cols=80 Identities=15% Similarity=0.287 Sum_probs=43.1
Q ss_pred HHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCC-ceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHH
Q 013317 288 YRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGR-HVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEA 366 (445)
Q Consensus 288 ~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~-~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i 366 (445)
+.+.+++-++.|+--||+....+-+. .++. -.-|.-.|. ++..-++.+...+. -+.+..+-+ .+++..++
T Consensus 95 Lke~a~~~Gi~~~SSPfd~~svd~l~----~~~~~ayKIaS~E~--~~~plik~iA~~~k--PiIlSTGma-~~~ei~~a 165 (347)
T COG2089 95 LKEYARKRGIIFFSSPFDLTAVDLLE----SLNPPAYKIASGEI--NDLPLIKYIAKKGK--PIILSTGMA-TIEEIEEA 165 (347)
T ss_pred HHHHHHHcCeEEEecCCCHHHHHHHH----hcCCCeEEecCccc--cChHHHHHHHhcCC--CEEEEcccc-cHHHHHHH
Confidence 45667888999999999755433332 3321 112333332 34444444444333 344443333 46666666
Q ss_pred HHHHHHcCCc
Q 013317 367 VKMAKRAGWG 376 (445)
Q Consensus 367 ~~~A~~~g~~ 376 (445)
++.|+++|.+
T Consensus 166 v~~~r~~g~~ 175 (347)
T COG2089 166 VAILRENGNP 175 (347)
T ss_pred HHHHHhcCCC
Confidence 6667766666
No 233
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=28.71 E-value=2.1e+02 Score=29.49 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=51.8
Q ss_pred ccCHHHHHHHHHHhCCceEEEe--ccccccCHHHHHHHHhcCCCCEEEecc--CccccHHHHHHHHHHHHHcCCcEEecC
Q 013317 306 QDDWEHYAELTGKIGRHVQIVG--DDLLVTNPKRVEKAIKEKTCNALLLKV--NQIGSVTESIEAVKMAKRAGWGVMASH 381 (445)
Q Consensus 306 ~~D~~~~~~L~~~~~~~~pI~g--de~~~~~~~~~~~~i~~~a~d~v~ik~--~k~GGit~a~~i~~~A~~~g~~~~~~~ 381 (445)
+.++.-|.+++++.+-.+-++- ++-. -..+.+.+.+ ......|.+.- +..|.+++..+|+++|+++|..+++..
T Consensus 122 ~sn~~pw~~~~~~~Ga~v~~i~~~~~g~-~~~~~~~~~i-~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDa 199 (405)
T COG0520 122 HSNIVPWQELAKRTGAKVRVIPLDDDGL-LDLDALEKLI-TPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDA 199 (405)
T ss_pred hhhHHHHHHHHHhcCcEEEEEecCCCCC-cCHHHHHHhc-CCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEEC
Confidence 4578899999998653333332 4443 3467777644 44566666663 567999999999999999998876654
No 234
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=28.25 E-value=2.5e+02 Score=27.45 Aligned_cols=66 Identities=8% Similarity=0.105 Sum_probs=48.6
Q ss_pred HHHHHHHhCCceEE--EeccccccCHHHHHHHHhcCCCCEEEeccCcc---ccHHHHHHHHHHHHHcCCcE--EecCC
Q 013317 312 YAELTGKIGRHVQI--VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI---GSVTESIEAVKMAKRAGWGV--MASHR 382 (445)
Q Consensus 312 ~~~L~~~~~~~~pI--~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~---GGit~a~~i~~~A~~~g~~~--~~~~~ 382 (445)
...+.++.+ +|| =.|. .++.+.++++++.+ ++.|++|-+.. -=|..+++++++|+++|+.+ -+||-
T Consensus 66 ~~~~A~~~~--VPV~lHLDH--g~~~e~i~~Ai~~G-ftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~v 138 (284)
T PRK09195 66 VSAAAKQYH--HPLALHLDH--HEKFDDIAQKVRSG-VRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRL 138 (284)
T ss_pred HHHHHHHCC--CCEEEECCC--CCCHHHHHHHHHcC-CCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 444555665 665 5665 35799999999986 69999998864 23567899999999999766 45663
No 235
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=28.17 E-value=5.5e+02 Score=24.83 Aligned_cols=123 Identities=10% Similarity=0.048 Sum_probs=68.5
Q ss_pred chHHHHHHHHHHHhcCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCee--EEEC
Q 013317 225 SYEGFELLKTAIAKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIV--SIED 302 (445)
Q Consensus 225 ~~~~l~~v~~ai~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~--~iEd 302 (445)
.+++.+.++.+++.+. +++.+.+-+.+ .+.++++++ .+..++.+.. .+=-
T Consensus 53 ~~Er~~~~~~~~~~~~--~~~~viagv~~-------------------------~~~~~ai~~-a~~a~~~Gad~v~~~~ 104 (288)
T cd00954 53 VEERKQIAEIVAEAAK--GKVTLIAHVGS-------------------------LNLKESQEL-AKHAEELGYDAISAIT 104 (288)
T ss_pred HHHHHHHHHHHHHHhC--CCCeEEeccCC-------------------------CCHHHHHHH-HHHHHHcCCCEEEEeC
Confidence 5777777777776553 45666655521 245677776 3445665533 3344
Q ss_pred CCC--cc---CHHHHHHHHHHh-CCceEEEecccc-----ccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHH
Q 013317 303 PFD--QD---DWEHYAELTGKI-GRHVQIVGDDLL-----VTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAK 371 (445)
Q Consensus 303 P~~--~~---D~~~~~~L~~~~-~~~~pI~gde~~-----~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~ 371 (445)
|.. +. =++-|..+.+.+ + +||+.-..- --+++-+.++.+ .-+++-+|-+- |-+....++.+...
T Consensus 105 P~y~~~~~~~i~~~~~~v~~a~~~--lpi~iYn~P~~tg~~l~~~~~~~L~~--~pnivgiK~s~-~d~~~~~~~~~~~~ 179 (288)
T cd00954 105 PFYYKFSFEEIKDYYREIIAAAAS--LPMIIYHIPALTGVNLTLEQFLELFE--IPNVIGVKFTA-TDLYDLERIRAASP 179 (288)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCC--CCEEEEeCccccCCCCCHHHHHHHhc--CCCEEEEEeCC-CCHHHHHHHHHhCC
Confidence 532 22 234567777777 5 777544321 014666777764 56899999873 44555554443211
Q ss_pred HcCCcEEecC
Q 013317 372 RAGWGVMASH 381 (445)
Q Consensus 372 ~~g~~~~~~~ 381 (445)
.++.++.|.
T Consensus 180 -~~~~v~~G~ 188 (288)
T cd00954 180 -EDKLVLNGF 188 (288)
T ss_pred -CCcEEEEec
Confidence 156655444
No 236
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=28.13 E-value=6.1e+02 Score=25.26 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=75.4
Q ss_pred CccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEE-------eccCccccHHHHHHHHHHHHHcCCcE
Q 013317 305 DQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALL-------LKVNQIGSVTESIEAVKMAKRAGWGV 377 (445)
Q Consensus 305 ~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~-------ik~~k~GGit~a~~i~~~A~~~g~~~ 377 (445)
+.-+|..++.|+..++ .||+.--.. +.+|.+.+++.+..-++. +|-.. -+|+..-++++..+. .+++
T Consensus 208 ~Sl~W~Di~wLr~~T~--LPIvvKGil--t~eDA~~Ave~G~~GIIVSNHGgRQlD~vp-AtI~~L~Evv~aV~~-ri~V 281 (363)
T KOG0538|consen 208 PSLSWKDIKWLRSITK--LPIVVKGVL--TGEDARKAVEAGVAGIIVSNHGGRQLDYVP-ATIEALPEVVKAVEG-RIPV 281 (363)
T ss_pred CCCChhhhHHHHhcCc--CCeEEEeec--ccHHHHHHHHhCCceEEEeCCCccccCccc-chHHHHHHHHHHhcC-ceEE
Confidence 3457888999999998 999777653 479999999988776664 33333 357777777765544 4888
Q ss_pred EecCCCCCChhHHHHHHHhhhcCCccccCCCC-------CchhHHHHHHHHHHHHHh
Q 013317 378 MASHRSGETEDTFIADLSVGLATGQIKTGAPC-------RSERLAKYNQLLRIEEEL 427 (445)
Q Consensus 378 ~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~-------~~er~~k~n~ll~i~~~l 427 (445)
++... .-++...+= |+|+++.-+..|-|. ++.-+.|-=++|+=|-|+
T Consensus 282 ~lDGG-VR~G~DVlK--ALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~iL~~efe~ 335 (363)
T KOG0538|consen 282 FLDGG-VRRGTDVLK--ALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDILRDEFEL 335 (363)
T ss_pred EEecC-cccchHHHH--HHhcccceEEecCchheeeccccchhHHHHHHHHHHHHHH
Confidence 77663 222223223 455567777766654 455777777788777665
No 237
>PRK10867 signal recognition particle protein; Provisional
Probab=28.04 E-value=2.5e+02 Score=29.30 Aligned_cols=133 Identities=13% Similarity=0.166 Sum_probs=70.2
Q ss_pred CCeeEE-ECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHH----HHhcCCCCEEEeccCc-----cccHHHHH
Q 013317 295 HPIVSI-EDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEK----AIKEKTCNALLLKVNQ-----IGSVTESI 364 (445)
Q Consensus 295 ~~i~~i-EdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~----~i~~~a~d~v~ik~~k-----~GGit~a~ 364 (445)
+.+..+ =|++++...+.|+.+.++.+ +|+..... ..++..+.. ......+|+|.+|..= ...+.++.
T Consensus 130 ~kV~lV~~D~~R~aa~eQL~~~a~~~g--v~v~~~~~-~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~ 206 (433)
T PRK10867 130 KKVLLVAADVYRPAAIEQLKTLGEQIG--VPVFPSGD-GQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELK 206 (433)
T ss_pred CcEEEEEccccchHHHHHHHHHHhhcC--CeEEecCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHH
Confidence 334444 57788777788888888877 77754322 134555542 3345668889988752 23445555
Q ss_pred HHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhcCCccccC--CCCCchhHHHHHHHHHHHHHhCCCccccC
Q 013317 365 EAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTG--APCRSERLAKYNQLLRIEEELGPAAIYAG 435 (445)
Q Consensus 365 ~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G--~~~~~er~~k~n~ll~i~~~l~~~~~~~~ 435 (445)
++.+......+-.++..+.+.. +++.|-.+.. .+.+. -+.+.+-.+|+.-.+.+...++-+-.|.+
T Consensus 207 ~i~~~v~p~evllVlda~~gq~----av~~a~~F~~-~~~i~giIlTKlD~~~rgG~alsi~~~~~~PI~fig 274 (433)
T PRK10867 207 AIKAAVNPDEILLVVDAMTGQD----AVNTAKAFNE-ALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIG 274 (433)
T ss_pred HHHHhhCCCeEEEEEecccHHH----HHHHHHHHHh-hCCCCEEEEeCccCcccccHHHHHHHHHCcCEEEEe
Confidence 5665554445444444432211 2222222211 11111 12344555666677888777765544433
No 238
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=27.75 E-value=4.5e+02 Score=26.45 Aligned_cols=98 Identities=11% Similarity=0.192 Sum_probs=68.6
Q ss_pred CcChHHHHHHHHHhhhcCCeeEE-ECCCCccCHHHHHHHHHH-hCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccC
Q 013317 278 KVSGDGLKNVYRSFISDHPIVSI-EDPFDQDDWEHYAELTGK-IGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN 355 (445)
Q Consensus 278 ~~t~~~~i~~~~~~~~~~~i~~i-EdP~~~~D~~~~~~L~~~-~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~ 355 (445)
.+++.+..+.|.+. -..-|..+ |+.+-...++.++++++. ++ +||.--|.. -++..+...-. -.+|+|.+=+.
T Consensus 138 ~~dp~~iA~~Ye~~-GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~--lPvLrKDFI-ID~yQI~eAr~-~GADAVLLIaa 212 (338)
T PLN02460 138 NFDPVEIAQAYEKG-GAACLSVLTDEKYFQGSFENLEAIRNAGVK--CPLLCKEFI-VDAWQIYYARS-KGADAILLIAA 212 (338)
T ss_pred CCCHHHHHHHHHhC-CCcEEEEecCcCcCCCCHHHHHHHHHcCCC--CCEeecccc-CCHHHHHHHHH-cCCCcHHHHHH
Confidence 45777766554331 11225544 777778899999999998 87 999777764 45787776543 35688887766
Q ss_pred ccccHHHHHHHHHHHHHcCCcEEecC
Q 013317 356 QIGSVTESIEAVKMAKRAGWGVMASH 381 (445)
Q Consensus 356 k~GGit~a~~i~~~A~~~g~~~~~~~ 381 (445)
-.+ =.++....++|+..|+.+.+--
T Consensus 213 iL~-~~~L~~l~~~A~~LGme~LVEV 237 (338)
T PLN02460 213 VLP-DLDIKYMLKICKSLGMAALIEV 237 (338)
T ss_pred hCC-HHHHHHHHHHHHHcCCeEEEEe
Confidence 553 3478889999999999987654
No 239
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=27.73 E-value=1.2e+02 Score=31.37 Aligned_cols=123 Identities=16% Similarity=0.172 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhhhc--CCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCC-CCEEEeccCcc
Q 013317 281 GDGLKNVYRSFISD--HPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKT-CNALLLKVNQI 357 (445)
Q Consensus 281 ~~~~i~~~~~~~~~--~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a-~d~v~ik~~k~ 357 (445)
+.|++-+.. .+.+ .+-.++=+-+.|.-++-++.-.+-++ +-|.-++. .+..+++.. +.+. +-++.--++-.
T Consensus 149 aAEAm~ma~-r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g--~~i~~~~~--~d~~~l~~~-~~~~~~gv~vQyP~~~ 222 (450)
T COG0403 149 AAEAMLMAK-RVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLG--IEIEVVDA--DDLDDLESA-DDGDVFGVLVQYPNTF 222 (450)
T ss_pred HHHHHHHHH-HhhcCcCceEEecCCCCHHHHHHHHhhcccCc--eEEEEecc--chhhhhhhc-cccCeEEEEEecCCCC
Confidence 456665433 3444 34556666677666666665555555 66644443 245555555 3333 33444456777
Q ss_pred c-cHHHHHHHHHHHHHcCCcEEecCCCC-----CChhHHHHHHHhhhcCCc---cccCCCC
Q 013317 358 G-SVTESIEAVKMAKRAGWGVMASHRSG-----ETEDTFIADLSVGLATGQ---IKTGAPC 409 (445)
Q Consensus 358 G-Git~a~~i~~~A~~~g~~~~~~~~~~-----et~~~~~~~la~a~~~~~---~~~G~~~ 409 (445)
| -+.+...+.+.++++|..++++.... ...-.+=+|++||.+-.| +-+|+|.
T Consensus 223 G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGGPh 283 (450)
T COG0403 223 GIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGPH 283 (450)
T ss_pred CccchhHHHHHHHHhhcCCEEEEEechhHhhccCCccccCCceEEecCcccCCCcCCCCcc
Confidence 7 56679999999999999888777532 222334578888876544 3355554
No 240
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=27.59 E-value=2.6e+02 Score=27.39 Aligned_cols=66 Identities=9% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCcc---ccHHHHHHHHHHHHHcCCcE
Q 013317 309 WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI---GSVTESIEAVKMAKRAGWGV 377 (445)
Q Consensus 309 ~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~---GGit~a~~i~~~A~~~g~~~ 377 (445)
......+.++.+ +||+.-=-...+.+.+++.++.+ ++.|++|-+.. -=+..+++++++|+++|+.+
T Consensus 63 ~~~~~~~a~~~~--VPValHLDH~~~~e~i~~ai~~G-ftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsV 131 (284)
T PRK12737 63 VAIAEVAARKYN--IPLALHLDHHEDLDDIKKKVRAG-IRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASV 131 (284)
T ss_pred HHHHHHHHHHCC--CCEEEECCCCCCHHHHHHHHHcC-CCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEE
No 241
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=27.51 E-value=79 Score=30.19 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=28.3
Q ss_pred CCCEEEeccCccccHHHHHHHHHHHHHcCCcEEe
Q 013317 346 TCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMA 379 (445)
Q Consensus 346 a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~ 379 (445)
..|...|+. +.|+..+.+++++.|+++|+++|+
T Consensus 38 ~~d~~~vd~-~~Gt~~d~~~Lv~~~h~~gi~Vil 70 (316)
T PF00128_consen 38 PSDYYAVDP-RFGTMEDFKELVDAAHKRGIKVIL 70 (316)
T ss_dssp ESEEEEEST-TTBHHHHHHHHHHHHHHTTCEEEE
T ss_pred ceeeecccc-ccchhhhhhhhhhccccccceEEE
Confidence 467777776 679999999999999999999854
No 242
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=27.24 E-value=2.2e+02 Score=27.92 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=47.3
Q ss_pred HHHHHHHHhCCceEE--EeccccccCHHHHHHHHhcCCCCEEEeccCccc---cHHHHHHHHHHHHHcCCcE--EecC
Q 013317 311 HYAELTGKIGRHVQI--VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG---SVTESIEAVKMAKRAGWGV--MASH 381 (445)
Q Consensus 311 ~~~~L~~~~~~~~pI--~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~G---Git~a~~i~~~A~~~g~~~--~~~~ 381 (445)
..+.++++.+ +|| =.|. ..+.+.+++.++.+ ++.|++|-+..- =|..+++++++|+++|+.+ -+|+
T Consensus 64 ~~~~~a~~~~--vPValHLDH--~~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~ 136 (287)
T PF01116_consen 64 MVKAAAEEAS--VPVALHLDH--GKDFEDIKRAIDAG-FTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGH 136 (287)
T ss_dssp HHHHHHHHST--SEEEEEEEE--E-SHHHHHHHHHHT-SSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESB
T ss_pred HHHHHHHHcC--CCEEeeccc--CCCHHHHHHHHHhC-cccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeee
Confidence 3566777777 776 4664 45799999999885 588999988642 3667899999999999876 4455
No 243
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=27.19 E-value=95 Score=28.49 Aligned_cols=41 Identities=20% Similarity=0.379 Sum_probs=31.6
Q ss_pred cCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEE
Q 013317 307 DDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALL 351 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ 351 (445)
-|++-.++|.+. + +||+++-- +++|++++++++.++..++.
T Consensus 132 pD~~lv~~l~~~-~--~pvIaEGr-i~tpe~a~~al~~GA~aVVV 172 (192)
T PF04131_consen 132 PDFELVRELVQA-D--VPVIAEGR-IHTPEQAAKALELGAHAVVV 172 (192)
T ss_dssp HHHHHHHHHHHT-T--SEEEEESS---SHHHHHHHHHTT-SEEEE
T ss_pred CCHHHHHHHHhC-C--CcEeecCC-CCCHHHHHHHHhcCCeEEEE
Confidence 378888888875 5 99988887 57899999999999876654
No 244
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=26.07 E-value=6e+02 Score=24.45 Aligned_cols=110 Identities=8% Similarity=0.064 Sum_probs=56.2
Q ss_pred HHHHHHHhcCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChH-HHHHHHHHhhhcCCeeEEE-CC-CCcc
Q 013317 231 LLKTAIAKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGD-GLKNVYRSFISDHPIVSIE-DP-FDQD 307 (445)
Q Consensus 231 ~v~~ai~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~-~~i~~~~~~~~~~~i~~iE-dP-~~~~ 307 (445)
.+++..+.-|. ..+-+.+|+-. .+++.|.+...+- .....+++. ++++.+.+.+..+=+.-|. |- +.-=
T Consensus 117 ~~~~i~~~fG~-~~IvvsiD~k~-----~~~g~~~V~~~GW--~~~t~~~~~~e~~~~~~~~~~~il~TdI~rDGtl~G~ 188 (253)
T TIGR02129 117 RLKEIVSLVGK-DRLIVDLSCRK-----TQDGRWIVAMNKW--QTITDLELNAETLEELSKYCDEFLIHAADVEGLCKGI 188 (253)
T ss_pred HHHHHHHHhCC-CCEEEEEEEEE-----cCCCcEEEEECCC--cccCCCChHHHHHHHHHhhCCEEEEeeecccCccccC
Confidence 45555555552 36999999930 0112333321110 012345555 5555443321111011121 11 1223
Q ss_pred CHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhc--CCCCEEE
Q 013317 308 DWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKE--KTCNALL 351 (445)
Q Consensus 308 D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~--~a~d~v~ 351 (445)
|++.+++|++.++ +||++.-- +++.+|++++-+. +..+++.
T Consensus 189 dlel~~~l~~~~~--ipVIASGG-v~s~eDi~~l~~~~~g~~~aIv 231 (253)
T TIGR02129 189 DEELVSKLGEWSP--IPITYAGG-AKSIDDLDLVDELSKGKVDLTI 231 (253)
T ss_pred CHHHHHHHHhhCC--CCEEEECC-CCCHHHHHHHHHhcCCCCcEEe
Confidence 8999999999987 88743333 5679999988443 4555554
No 245
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=25.78 E-value=1.4e+02 Score=31.62 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHc--CCcEEecCCCCCChhHHHHHHHhhhcCCccccCCCCCch
Q 013317 335 PKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRA--GWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSE 412 (445)
Q Consensus 335 ~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~--g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~~~e 412 (445)
.+.+..+++. .+|.+.+|..+ |=-...+++++..++. ++++|+|. .-|... +.+|. ..++..++.|.-+++-
T Consensus 227 ~~ra~~Lv~a-GVd~i~~D~a~-g~~~~~~~~i~~i~~~~~~~~vi~g~--~~t~~~-~~~l~-~~G~d~i~vg~g~Gs~ 300 (475)
T TIGR01303 227 GGKAKALLDA-GVDVLVIDTAH-GHQVKMISAIKAVRALDLGVPIVAGN--VVSAEG-VRDLL-EAGANIIKVGVGPGAM 300 (475)
T ss_pred HHHHHHHHHh-CCCEEEEeCCC-CCcHHHHHHHHHHHHHCCCCeEEEec--cCCHHH-HHHHH-HhCCCEEEECCcCCcc
Confidence 4666666664 59999999999 6557777778888876 78988753 222222 23433 3588999977655444
Q ss_pred hHH
Q 013317 413 RLA 415 (445)
Q Consensus 413 r~~ 415 (445)
++.
T Consensus 301 ~tt 303 (475)
T TIGR01303 301 CTT 303 (475)
T ss_pred ccC
Confidence 433
No 246
>PRK06739 pyruvate kinase; Validated
Probab=25.42 E-value=7.2e+02 Score=25.17 Aligned_cols=149 Identities=9% Similarity=0.133 Sum_probs=87.1
Q ss_pred cChHHHHHHHHHhhhcCCeeEEECCCC--ccCHHHHHHHHHHhC-CceEEEeccccccCHHHHHHHHhcCCCCEEEeccC
Q 013317 279 VSGDGLKNVYRSFISDHPIVSIEDPFD--QDDWEHYAELTGKIG-RHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN 355 (445)
Q Consensus 279 ~t~~~~i~~~~~~~~~~~i~~iEdP~~--~~D~~~~~~L~~~~~-~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~ 355 (445)
+|..+.-+. ++.-++++.||=--|- ++|....+++-.+.+ .+++|++-=-.....+.+...++ ++|++++-=+
T Consensus 163 ltekD~~di--~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~--~sDgimVARG 238 (352)
T PRK06739 163 ITEKDKKDI--QFLLEEDVDFIACSFVRKPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICK--EADGIMIARG 238 (352)
T ss_pred CCHHHHHHH--HHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHH--hcCEEEEECc
Confidence 455554442 2334566777766663 567777777665542 24777665211122334444443 6899998654
Q ss_pred ccc---cHHH----HHHHHHHHHHcCCcEEecCCCCCChh-------HHHHHHHhhh--cCCccccCC-----CCCchhH
Q 013317 356 QIG---SVTE----SIEAVKMAKRAGWGVMASHRSGETED-------TFIADLSVGL--ATGQIKTGA-----PCRSERL 414 (445)
Q Consensus 356 k~G---Git~----a~~i~~~A~~~g~~~~~~~~~~et~~-------~~~~~la~a~--~~~~~~~G~-----~~~~er~ 414 (445)
..| ++.+ -+++++.|+++|.++++...+.||.. +=..|+|-|. |+..+.+.+ -...+-+
T Consensus 239 DLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~yPveaV 318 (352)
T PRK06739 239 DLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGEHPIESV 318 (352)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCCCCHHHHH
Confidence 443 2333 37889999999999999998777643 2345664444 666666542 2245566
Q ss_pred HHHHHHHHHHHHhCCCc
Q 013317 415 AKYNQLLRIEEELGPAA 431 (445)
Q Consensus 415 ~k~n~ll~i~~~l~~~~ 431 (445)
.-.++..+-.|...++.
T Consensus 319 ~~m~~I~~~aE~~~~~~ 335 (352)
T PRK06739 319 STLRLVSEFAEHVKKDG 335 (352)
T ss_pred HHHHHHHHHHHhhhccC
Confidence 66666666555443333
No 247
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=25.30 E-value=1.3e+02 Score=28.27 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=32.8
Q ss_pred cCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEec
Q 013317 307 DDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
-+++..+++++.++ +|+++.-- +++++++.++++...+|.+.+-
T Consensus 180 ~~~~~i~~i~~~~~--~pvia~GG-i~~~~di~~~l~~~g~dgv~vg 223 (243)
T cd04731 180 YDLELIRAVSSAVN--IPVIASGG-AGKPEHFVEAFEEGGADAALAA 223 (243)
T ss_pred CCHHHHHHHHhhCC--CCEEEeCC-CCCHHHHHHHHHhCCCCEEEEe
Confidence 46888899998887 77633322 3579999999998778877763
No 248
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=25.01 E-value=4.8e+02 Score=27.84 Aligned_cols=116 Identities=15% Similarity=0.222 Sum_probs=68.2
Q ss_pred HHHHHHhhhc-CCeeEEECCCCccC---HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEecc------
Q 013317 285 KNVYRSFISD-HPIVSIEDPFDQDD---WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV------ 354 (445)
Q Consensus 285 i~~~~~~~~~-~~i~~iEdP~~~~D---~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~------ 354 (445)
.+....+++. .++..| |.-+-+. ++..++|++..+ .++|++.+. .++++.+.+++. .+|+|.+-.
T Consensus 250 ~~r~~~l~~ag~d~i~i-D~~~g~~~~~~~~i~~ik~~~p-~~~vi~g~v--~t~e~a~~a~~a-GaD~i~vg~g~G~~~ 324 (505)
T PLN02274 250 KERLEHLVKAGVDVVVL-DSSQGDSIYQLEMIKYIKKTYP-ELDVIGGNV--VTMYQAQNLIQA-GVDGLRVGMGSGSIC 324 (505)
T ss_pred HHHHHHHHHcCCCEEEE-eCCCCCcHHHHHHHHHHHHhCC-CCcEEEecC--CCHHHHHHHHHc-CcCEEEECCCCCccc
Confidence 3444454442 445544 3322222 356788888774 377755443 469999999875 467876532
Q ss_pred -Ccc------ccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHHHHhhhcCCccccCCC
Q 013317 355 -NQI------GSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAP 408 (445)
Q Consensus 355 -~k~------GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~ 408 (445)
++. .-++....+.+++++.+++++..... -+.-. +--|+++++..+..|..
T Consensus 325 ~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI-~~~~d--i~kAla~GA~~V~vGs~ 382 (505)
T PLN02274 325 TTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGI-SNSGH--IVKALTLGASTVMMGSF 382 (505)
T ss_pred cCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCC-CCHHH--HHHHHHcCCCEEEEchh
Confidence 111 13456777888888899998755532 22222 22344557778877773
No 249
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=24.96 E-value=37 Score=32.96 Aligned_cols=53 Identities=17% Similarity=0.301 Sum_probs=35.0
Q ss_pred CccccHHHHHHHHHHHHHcCCcEEecCC--CC---CChhHHHHHHHhhhcCCccccCC
Q 013317 355 NQIGSVTESIEAVKMAKRAGWGVMASHR--SG---ETEDTFIADLSVGLATGQIKTGA 407 (445)
Q Consensus 355 ~k~GGit~a~~i~~~A~~~g~~~~~~~~--~~---et~~~~~~~la~a~~~~~~~~G~ 407 (445)
...|-+.++.+++++|+..|++..+.|- +| =+.-..-+|+-||++..-+-.-+
T Consensus 167 g~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmAAs~ 224 (382)
T COG1103 167 GEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASA 224 (382)
T ss_pred CCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEecCccchhccC
Confidence 4679999999999999999999877662 11 12222335555565555544333
No 250
>PTZ00066 pyruvate kinase; Provisional
Probab=24.86 E-value=4.1e+02 Score=28.38 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=77.1
Q ss_pred cChHHHHHHHHHhhhcCCeeEEECCCC--ccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCc
Q 013317 279 VSGDGLKNVYRSFISDHPIVSIEDPFD--QDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 356 (445)
Q Consensus 279 ~t~~~~i~~~~~~~~~~~i~~iEdP~~--~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k 356 (445)
+|..+.-+. .++.-+.++.||=-.|- ++|....+++-...+.+++|++-=-.....+.+.+.+ .++|++++-=+.
T Consensus 207 ltekD~~dI-~~f~~~~~vD~IalSFVr~a~DI~~~r~~l~~~g~~~~IiAKIE~~~av~NldeIl--~~sDGIMVARGD 283 (513)
T PTZ00066 207 IGEKDKNDI-LNFAIPMGCDFIALSFVQSADDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEIL--AESDGIMVARGD 283 (513)
T ss_pred CCHHHHHHH-HHHHHhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHH--HhcCEEEEEccc
Confidence 555554432 12334567777766663 5677777777665544588876521112233444443 378999986655
Q ss_pred ccc---H----HHHHHHHHHHHHcCCcEEecCCCCCChh-------HHHHHHHhhh--cCCcccc
Q 013317 357 IGS---V----TESIEAVKMAKRAGWGVMASHRSGETED-------TFIADLSVGL--ATGQIKT 405 (445)
Q Consensus 357 ~GG---i----t~a~~i~~~A~~~g~~~~~~~~~~et~~-------~~~~~la~a~--~~~~~~~ 405 (445)
.|- + .--+++++.|+.+|.++++...+.||.. +=..|+|-|. |+..+.+
T Consensus 284 LGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~DavML 348 (513)
T PTZ00066 284 LGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVML 348 (513)
T ss_pred cccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEe
Confidence 543 1 3347899999999999999888777643 2345776666 6666655
No 251
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=24.63 E-value=3.7e+02 Score=26.35 Aligned_cols=68 Identities=12% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCcc---ccHHHHHHHHHHHHHcCCcE
Q 013317 309 WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI---GSVTESIEAVKMAKRAGWGV 377 (445)
Q Consensus 309 ~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~---GGit~a~~i~~~A~~~g~~~ 377 (445)
....+.+.++.+..+||+.-=-...+.+.++++++.+. +.|++|-++. -=|..+++++++|+++|+.+
T Consensus 64 ~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~Gf-tSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~V 134 (285)
T PRK07709 64 VAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGF-TSVMIDASHHPFEENVETTKKVVEYAHARNVSV 134 (285)
T ss_pred HHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCC-CEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
No 252
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=24.45 E-value=2e+02 Score=26.98 Aligned_cols=46 Identities=13% Similarity=0.145 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCCCEEEeccCc---cccHHHHHHHHHHHHHcCCcEEecC
Q 013317 336 KRVEKAIKEKTCNALLLKVNQ---IGSVTESIEAVKMAKRAGWGVMASH 381 (445)
Q Consensus 336 ~~~~~~i~~~a~d~v~ik~~k---~GGit~a~~i~~~A~~~g~~~~~~~ 381 (445)
+.++.+++.+.++.||+.--. --=...+.++..+|+.+|+++++..
T Consensus 30 ~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~~~gv~liINd 78 (221)
T PRK06512 30 KLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQEAGAAALIAG 78 (221)
T ss_pred HHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEeC
Confidence 455566666657889985322 2223446778889999999988765
No 253
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=24.41 E-value=6.1e+02 Score=24.00 Aligned_cols=69 Identities=10% Similarity=0.222 Sum_probs=46.8
Q ss_pred CcChHHHHHHHHHhhhc---CCeeEEECCCCc---cCHHHHHHHHHHhCCce-EE-EeccccccCHHHHHHHHhcCCCCE
Q 013317 278 KVSGDGLKNVYRSFISD---HPIVSIEDPFDQ---DDWEHYAELTGKIGRHV-QI-VGDDLLVTNPKRVEKAIKEKTCNA 349 (445)
Q Consensus 278 ~~t~~~~i~~~~~~~~~---~~i~~iEdP~~~---~D~~~~~~L~~~~~~~~-pI-~gde~~~~~~~~~~~~i~~~a~d~ 349 (445)
..+.++.+.++ .+.+. +++.|+|.--.. .+.+-.+++++.++ . || +|.- +++++++++++..+ +|.
T Consensus 136 ~~~~~~~~~~~-~lA~~~~g~~~vYle~gs~~g~~~~~e~I~~v~~~~~--~~pvivGGG--Irs~e~a~~~l~~G-AD~ 209 (232)
T PRK04169 136 PLDKPDIAAYA-ALAAEYLGMPIVYLEYGGGAGDPVPPEMVKAVKKALD--ITPLIYGGG--IRSPEQARELMAAG-ADT 209 (232)
T ss_pred CCChHHHHHHH-HHHHHHcCCCeEEEECCCCCCCCCCHHHHHHHHHhcC--CCcEEEECC--CCCHHHHHHHHHhC-CCE
Confidence 45667776654 34443 468899955332 34788899999887 5 66 5664 46799999988766 577
Q ss_pred EEe
Q 013317 350 LLL 352 (445)
Q Consensus 350 v~i 352 (445)
+.+
T Consensus 210 VVV 212 (232)
T PRK04169 210 IVV 212 (232)
T ss_pred EEE
Confidence 665
No 254
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.34 E-value=4.5e+02 Score=25.68 Aligned_cols=90 Identities=17% Similarity=0.256 Sum_probs=49.4
Q ss_pred HHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhH
Q 013317 310 EHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+..++++++.+...+|.-+ +.|.+++.++++.++ |++++|=+. +.++.+++.+.+... .+-.+ |.....
T Consensus 181 ~av~~~r~~~~~~~kIeVE---v~slee~~ea~~~ga-DiImLDn~s---~e~l~~av~~~~~~~-~leaS---GgI~~~ 249 (281)
T PRK06543 181 EALRHVRAQLGHTTHVEVE---VDRLDQIEPVLAAGV-DTIMLDNFS---LDDLREGVELVDGRA-IVEAS---GNVNLN 249 (281)
T ss_pred HHHHHHHHhCCCCCcEEEE---eCCHHHHHHHHhcCC-CEEEECCCC---HHHHHHHHHHhCCCe-EEEEE---CCCCHH
Confidence 4566666665422333222 456788888776554 888888764 455555555544322 22222 333344
Q ss_pred HHHHHHhhhcCCccccCCCCCc
Q 013317 390 FIADLSVGLATGQIKTGAPCRS 411 (445)
Q Consensus 390 ~~~~la~a~~~~~~~~G~~~~~ 411 (445)
.+...|- ++..++-.|.+.-+
T Consensus 250 ni~~yA~-tGVD~Is~galths 270 (281)
T PRK06543 250 TVGAIAS-TGVDVISVGALTHS 270 (281)
T ss_pred HHHHHHh-cCCCEEEeCccccC
Confidence 4445443 47777777776543
No 255
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=24.05 E-value=4.8e+02 Score=26.28 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=60.3
Q ss_pred HHHHHHHHHhh-----hcCCeeEEECCCCccCHHHHHHHHHHhCCce-EEEeccccccCHHHHHHHHhcCCCCEEEec-c
Q 013317 282 DGLKNVYRSFI-----SDHPIVSIEDPFDQDDWEHYAELTGKIGRHV-QIVGDDLLVTNPKRVEKAIKEKTCNALLLK-V 354 (445)
Q Consensus 282 ~~~i~~~~~~~-----~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~-pI~gde~~~~~~~~~~~~i~~~a~d~v~ik-~ 354 (445)
.+++..+.+.+ ++-+-..+.+|-.+-.+..|..+.+..+..+ .|-.++...-+++++++.+..+ ...+.+- +
T Consensus 91 t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~-t~lv~i~~~ 169 (401)
T PRK10874 91 TESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITPR-TRILALGQM 169 (401)
T ss_pred HHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCcC-cEEEEEeCC
Confidence 45555444333 2334455666765555667777766655222 2222332223578888887543 4555543 2
Q ss_pred -CccccHHHHHHHHHHHHHcCCcEEecC
Q 013317 355 -NQIGSVTESIEAVKMAKRAGWGVMASH 381 (445)
Q Consensus 355 -~k~GGit~a~~i~~~A~~~g~~~~~~~ 381 (445)
+..|.+.+..+++++|+++|+.+++..
T Consensus 170 ~n~tG~~~~~~~i~~l~~~~g~~~ivD~ 197 (401)
T PRK10874 170 SNVTGGCPDLARAITLAHQAGMVVMVDG 197 (401)
T ss_pred cccccCcCCHHHHHHHHHHcCCEEEEEC
Confidence 467888899999999999999886655
No 256
>PRK08508 biotin synthase; Provisional
Probab=23.86 E-value=6.6e+02 Score=24.21 Aligned_cols=105 Identities=11% Similarity=0.135 Sum_probs=58.9
Q ss_pred cChHHHHHHHHHhhhcCC---eeEE--ECCCCccCHHHHH----HHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCE
Q 013317 279 VSGDGLKNVYRSFISDHP---IVSI--EDPFDQDDWEHYA----ELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNA 349 (445)
Q Consensus 279 ~t~~~~i~~~~~~~~~~~---i~~i--EdP~~~~D~~~~~----~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~ 349 (445)
.+++++++...+ ..+.+ +.++ ..-++..+++-+. .+++... .+.+++-.-. .+.+.++++.+.+ +|.
T Consensus 40 ~s~eeI~~~a~~-a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p-~l~i~~s~G~-~~~e~l~~Lk~aG-ld~ 115 (279)
T PRK08508 40 KDIEQIVQEAKM-AKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVP-GLHLIACNGT-ASVEQLKELKKAG-IFS 115 (279)
T ss_pred CCHHHHHHHHHH-HHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCC-CcEEEecCCC-CCHHHHHHHHHcC-CCE
Confidence 478888887544 33344 3332 1112333454444 4444431 2555433332 3477777775543 455
Q ss_pred EEec----------cCccccHHHHHHHHHHHHHcCCcE----EecCCCCCChhH
Q 013317 350 LLLK----------VNQIGSVTESIEAVKMAKRAGWGV----MASHRSGETEDT 389 (445)
Q Consensus 350 v~ik----------~~k~GGit~a~~i~~~A~~~g~~~----~~~~~~~et~~~ 389 (445)
++.+ +.......+.++.++.|++.|+.+ ++|+ +||...
T Consensus 116 ~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~Gl--GEt~ed 167 (279)
T PRK08508 116 YNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGL--GESWED 167 (279)
T ss_pred EcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEec--CCCHHH
Confidence 5543 334456788888999999999987 5554 677544
No 257
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=23.82 E-value=3.3e+02 Score=26.56 Aligned_cols=96 Identities=21% Similarity=0.120 Sum_probs=56.9
Q ss_pred CcChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCcc
Q 013317 278 KVSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 357 (445)
Q Consensus 278 ~~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~ 357 (445)
++-.++-++.+.+.-+++++-.+=|=..+++.+..+ +..+ +-=+|=-.+ .+. ++.+.+. +.-..|++|=.+.
T Consensus 69 G~G~eeGL~iL~~vk~~~GlpvvTeV~~~~~~~~~a---e~vD--ilQIgAr~~-rnt-dLL~a~~-~t~kpV~lKrGqf 140 (281)
T PRK12457 69 GVGLDEGLRIFEEVKARFGVPVITDVHEVEQAAPVA---EVAD--VLQVPAFLA-RQT-DLVVAIA-KTGKPVNIKKPQF 140 (281)
T ss_pred CCCHHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHh---hhCe--EEeeCchhh-chH-HHHHHHh-ccCCeEEecCCCc
Confidence 444466777777766678876665555444433333 3333 322455443 433 3333322 2346899999888
Q ss_pred ccHHHHHHHHHHHHHcC-CcEEecC
Q 013317 358 GSVTESIEAVKMAKRAG-WGVMASH 381 (445)
Q Consensus 358 GGit~a~~i~~~A~~~g-~~~~~~~ 381 (445)
-...+++-+++++.+.| -.+++-+
T Consensus 141 ~s~~e~~~aae~i~~~Gn~~vilcE 165 (281)
T PRK12457 141 MSPTQMKHVVSKCREAGNDRVILCE 165 (281)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 88899988888888775 3444333
No 258
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=23.65 E-value=3.4e+02 Score=24.64 Aligned_cols=80 Identities=15% Similarity=0.069 Sum_probs=48.8
Q ss_pred cCHHHHHHHHhcCCCCEEEecc----CccccHHHHHHHHHHHHH--cCCcEEecCCCCCChhHHHHHHHhhhcCCccccC
Q 013317 333 TNPKRVEKAIKEKTCNALLLKV----NQIGSVTESIEAVKMAKR--AGWGVMASHRSGETEDTFIADLSVGLATGQIKTG 406 (445)
Q Consensus 333 ~~~~~~~~~i~~~a~d~v~ik~----~k~GGit~a~~i~~~A~~--~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G 406 (445)
+++++++.+++.+ +|++++-. .|.=....++++.+.+.. .++.+++..+ ...+.+++..+++..+.++
T Consensus 7 ~~~ed~~~a~~~G-vd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~-----~~~i~~ia~~~~~d~Vqlh 80 (203)
T cd00405 7 TTLEDALAAAEAG-ADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNED-----LEEILEIAEELGLDVVQLH 80 (203)
T ss_pred CCHHHHHHHHHcC-CCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCC-----HHHHHHHHHhcCCCEEEEC
Confidence 4577777777555 68777653 333457777888887776 5566554432 3345667777777777776
Q ss_pred CCCCchhHHHHH
Q 013317 407 APCRSERLAKYN 418 (445)
Q Consensus 407 ~~~~~er~~k~n 418 (445)
+--..+.+....
T Consensus 81 g~e~~~~~~~l~ 92 (203)
T cd00405 81 GDESPEYCAQLR 92 (203)
T ss_pred CCCCHHHHHHHH
Confidence 543333444443
No 259
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=23.62 E-value=6e+02 Score=23.61 Aligned_cols=44 Identities=11% Similarity=0.186 Sum_probs=30.2
Q ss_pred CccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEe
Q 013317 305 DQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 305 ~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
..-|++.++++++.+. +||++.-- +++++++.++.+. .++.+.+
T Consensus 178 ~g~~~~~i~~i~~~~~--iPvia~GG-I~~~~di~~~~~~-Ga~gv~v 221 (241)
T PRK13585 178 EGVNTEPVKELVDSVD--IPVIASGG-VTTLDDLRALKEA-GAAGVVV 221 (241)
T ss_pred CCCCHHHHHHHHHhCC--CCEEEeCC-CCCHHHHHHHHHc-CCCEEEE
Confidence 4457888999999987 77733322 4679999997554 4555554
No 260
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=23.56 E-value=2.4e+02 Score=27.31 Aligned_cols=53 Identities=23% Similarity=0.221 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHcCCcEEecCCC-C----C---C---hhHHHHHHHhhhcCCccccCCCCCch
Q 013317 360 VTESIEAVKMAKRAGWGVMASHRS-G----E---T---EDTFIADLSVGLATGQIKTGAPCRSE 412 (445)
Q Consensus 360 it~a~~i~~~A~~~g~~~~~~~~~-~----e---t---~~~~~~~la~a~~~~~~~~G~~~~~e 412 (445)
|.++-++.+.|+++|++++.-.-. + . . ..+.++++|.-+++.++|...+...|
T Consensus 129 i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e 192 (265)
T COG1830 129 IENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDPE 192 (265)
T ss_pred HHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCChH
Confidence 566677888999999998763311 0 0 1 23467788999999999866654333
No 261
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=23.53 E-value=5.3e+02 Score=24.21 Aligned_cols=70 Identities=9% Similarity=0.072 Sum_probs=47.3
Q ss_pred CcChHHHHHHHHHhhhcCC--eeEEECCCCccCHHHHHHHHHHh-CCceEE-EeccccccCHHHHHHHHhcCCCCEEEec
Q 013317 278 KVSGDGLKNVYRSFISDHP--IVSIEDPFDQDDWEHYAELTGKI-GRHVQI-VGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 278 ~~t~~~~i~~~~~~~~~~~--i~~iEdP~~~~D~~~~~~L~~~~-~~~~pI-~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
..+++++..+ +...+.++ +.|+|-==..-+.+-.+++++.+ + +|| +|.- ++++++++++++.+ +|.+.+-
T Consensus 131 ~~~~e~~~ay-A~aae~~g~~ivyLe~SG~~~~~e~I~~v~~~~~~--~pl~vGGG--Irs~e~a~~l~~aG-AD~VVVG 204 (219)
T cd02812 131 DLKPEDAAAY-ALAAEYLGMPIVYLEYSGAYGPPEVVRAVKKVLGD--TPLIVGGG--IRSGEQAKEMAEAG-ADTIVVG 204 (219)
T ss_pred CCCHHHHHHH-HHHHHHcCCeEEEeCCCCCcCCHHHHHHHHHhcCC--CCEEEeCC--CCCHHHHHHHHHcC-CCEEEEC
Confidence 4566776654 55555544 77888211235788899999988 6 776 5664 46799999998766 5666553
No 262
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=23.15 E-value=3.6e+02 Score=26.36 Aligned_cols=66 Identities=9% Similarity=0.118 Sum_probs=48.2
Q ss_pred HHHHHHHHhCCceEE--EeccccccCHHHHHHHHhcCCCCEEEeccCccc---cHHHHHHHHHHHHHcCCcE--EecC
Q 013317 311 HYAELTGKIGRHVQI--VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG---SVTESIEAVKMAKRAGWGV--MASH 381 (445)
Q Consensus 311 ~~~~L~~~~~~~~pI--~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~G---Git~a~~i~~~A~~~g~~~--~~~~ 381 (445)
....+.++.+ +|| =.|. ..+.+.+++.++.+ ++.|++|-+..- =+-.+++++++|+++|+.+ -+||
T Consensus 63 ~~~~~a~~~~--VPValHLDH--g~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~ 135 (282)
T TIGR01858 63 LCSAASTTYN--MPLALHLDH--HESLDDIRQKVHAG-VRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGR 135 (282)
T ss_pred HHHHHHHHCC--CCEEEECCC--CCCHHHHHHHHHcC-CCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 3445555666 665 5665 35789999999986 699999988642 3556889999999999876 4555
No 263
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=22.96 E-value=2.3e+02 Score=27.75 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCC
Q 013317 335 PKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRS 383 (445)
Q Consensus 335 ~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~ 383 (445)
.+-+.++++.+. +++.=|+.-. ++.++.+++++|++.|+.++++++.
T Consensus 81 ~e~~~~AL~aGk-hVl~EKPla~-t~~ea~~l~~~a~~~~~~l~v~~~~ 127 (342)
T COG0673 81 AELALAALEAGK-HVLCEKPLAL-TLEEAEELVELARKAGVKLMVGFNR 127 (342)
T ss_pred HHHHHHHHhcCC-EEEEcCCCCC-CHHHHHHHHHHHHHcCCceeeehhh
Confidence 455566666655 7777776654 8999999999999999999999964
No 264
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=22.89 E-value=7.8e+02 Score=24.70 Aligned_cols=145 Identities=12% Similarity=0.233 Sum_probs=81.2
Q ss_pred CcChHHHHHHHHHhhhcCCeeEEECCCC--ccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccC
Q 013317 278 KVSGDGLKNVYRSFISDHPIVSIEDPFD--QDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN 355 (445)
Q Consensus 278 ~~t~~~~i~~~~~~~~~~~i~~iEdP~~--~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~ 355 (445)
.+|..+.-+. ++.-+.++.||=-+|- ++|....+++-...+.+++|++-=......+.+...++ ++|++.+.=+
T Consensus 173 ~LtekD~~di--~fa~~~~vD~IalSFVrsa~dV~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~~--~sDgimiaRG 248 (348)
T PF00224_consen 173 ALTEKDKEDI--KFAVENGVDFIALSFVRSAEDVKELRKILGEKGKDIKIIAKIETKEAVENLDEILE--ASDGIMIARG 248 (348)
T ss_dssp SS-HHHHHHH--HHHHHTT-SEEEETTE-SHHHHHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHHH--HSSEEEEEHH
T ss_pred cCCHHHHHHH--HHHHHcCCCEEEecCCCchHHHHHHHHHhhhcCcccceeeccccHHHHhhHHHHhh--hcCeEEEecC
Confidence 3455554432 3334567777777774 45666666555544345787665221222334444444 5899997632
Q ss_pred ccc-------cHHHHHHHHHHHHHcCCcEEecCCCCCChh-------HHHHHHHhhh--cCCccccC-----CCCCchhH
Q 013317 356 QIG-------SVTESIEAVKMAKRAGWGVMASHRSGETED-------TFIADLSVGL--ATGQIKTG-----APCRSERL 414 (445)
Q Consensus 356 k~G-------Git~a~~i~~~A~~~g~~~~~~~~~~et~~-------~~~~~la~a~--~~~~~~~G-----~~~~~er~ 414 (445)
..| -..--+++++.|+++|.++++...+.||.. +=+.|++-|. ++.-+.+. +-...|-+
T Consensus 249 DLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa~G~~p~~~v 328 (348)
T PF00224_consen 249 DLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETAIGKYPVEAV 328 (348)
T ss_dssp HHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHHTSSSHHHHH
T ss_pred CcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcCCCCCHHHHH
Confidence 221 123346789999999999999998777633 2356776554 77766653 23345555
Q ss_pred HHHHHHHHHHHH
Q 013317 415 AKYNQLLRIEEE 426 (445)
Q Consensus 415 ~k~n~ll~i~~~ 426 (445)
.-.++.++-.|.
T Consensus 329 ~~~~~i~~~~E~ 340 (348)
T PF00224_consen 329 KTMARIIREAEK 340 (348)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 556665554443
No 265
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=22.81 E-value=4.5e+02 Score=26.57 Aligned_cols=61 Identities=21% Similarity=0.146 Sum_probs=42.7
Q ss_pred CceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCC
Q 013317 321 RHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHR 382 (445)
Q Consensus 321 ~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~ 382 (445)
.++-|+.|+... ..+++...++....++...++..--++....+.++.+++++..++++=.
T Consensus 23 ~r~livtd~~~~-~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiG 83 (374)
T cd08183 23 RRVLLVTGASSL-RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIG 83 (374)
T ss_pred CcEEEEECCchH-HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEec
Confidence 346667776533 3555666666666666555544455678899999999999999988875
No 266
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=22.80 E-value=3.5e+02 Score=25.78 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=22.4
Q ss_pred cChHHHHHHHHHhhhcCCeeEEECCCCccCHHHHHHH
Q 013317 279 VSGDGLKNVYRSFISDHPIVSIEDPFDQDDWEHYAEL 315 (445)
Q Consensus 279 ~t~~~~i~~~~~~~~~~~i~~iEdP~~~~D~~~~~~L 315 (445)
++.++..++ .+.+++.+|.|+--||+.++.+-+.++
T Consensus 53 l~~e~~~~L-~~~~~~~gi~f~stpfd~~s~d~l~~~ 88 (241)
T PF03102_consen 53 LSEEQHKEL-FEYCKELGIDFFSTPFDEESVDFLEEL 88 (241)
T ss_dssp S-HHHHHHH-HHHHHHTT-EEEEEE-SHHHHHHHHHH
T ss_pred CCHHHHHHH-HHHHHHcCCEEEECCCCHHHHHHHHHc
Confidence 345555543 667788999999999976665555443
No 267
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=22.79 E-value=5.1e+02 Score=24.17 Aligned_cols=99 Identities=14% Similarity=0.241 Sum_probs=53.9
Q ss_pred HHHHHHHhcCCCcceEEEEecccc-ccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCee-EEECCCCc--
Q 013317 231 LLKTAIAKGGYIGKIVIGMDVAAS-EFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIV-SIEDPFDQ-- 306 (445)
Q Consensus 231 ~v~~ai~~~G~~~~i~l~vD~~a~-~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~-~iEdP~~~-- 306 (445)
.+.+.++..|. .++.+.+|+... ..+..+ |. .....++.++++. +.++++. +|=--+..
T Consensus 111 ~l~~~~~~~g~-~~ivvslD~~~g~~v~~~g---w~---------~~~~~~~~~~~~~----~~~~g~~~ii~tdi~~dG 173 (229)
T PF00977_consen 111 LLEELAERYGS-QRIVVSLDARDGYKVATNG---WQ---------ESSGIDLEEFAKR----LEELGAGEIILTDIDRDG 173 (229)
T ss_dssp HHHHHHHHHGG-GGEEEEEEEEETEEEEETT---TT---------EEEEEEHHHHHHH----HHHTT-SEEEEEETTTTT
T ss_pred HHHHHHHHcCc-ccEEEEEEeeeceEEEecC---cc---------ccCCcCHHHHHHH----HHhcCCcEEEEeeccccC
Confidence 34455544451 269999999643 222221 10 0112455555443 3444422 23333332
Q ss_pred ----cCHHHHHHHHHHhCCceEE-EeccccccCHHHHHHHHhcCCCCEEE
Q 013317 307 ----DDWEHYAELTGKIGRHVQI-VGDDLLVTNPKRVEKAIKEKTCNALL 351 (445)
Q Consensus 307 ----~D~~~~~~L~~~~~~~~pI-~gde~~~~~~~~~~~~i~~~a~d~v~ 351 (445)
-|++.+++|++..+ +|+ ++.- +++.+|++++.+.+. +.+.
T Consensus 174 t~~G~d~~~~~~l~~~~~--~~viasGG--v~~~~Dl~~l~~~G~-~gvi 218 (229)
T PF00977_consen 174 TMQGPDLELLKQLAEAVN--IPVIASGG--VRSLEDLRELKKAGI-DGVI 218 (229)
T ss_dssp TSSS--HHHHHHHHHHHS--SEEEEESS----SHHHHHHHHHTTE-CEEE
T ss_pred CcCCCCHHHHHHHHHHcC--CCEEEecC--CCCHHHHHHHHHCCC-cEEE
Confidence 37899999999997 886 3333 467999999987666 5544
No 268
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=22.78 E-value=1.6e+02 Score=27.24 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=43.4
Q ss_pred cccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHH-cCCcE--EecCCCCC---C--hhHH---HHHHHhh
Q 013317 329 DLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKR-AGWGV--MASHRSGE---T--EDTF---IADLSVG 397 (445)
Q Consensus 329 e~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~-~g~~~--~~~~~~~e---t--~~~~---~~~la~a 397 (445)
|.++.+++++..+.+.++-.+=...-...||+|+....++.+.+ .++++ |+=.+.++ + +... -...+..
T Consensus 4 Evcv~s~~~a~~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~ 83 (201)
T PF03932_consen 4 EVCVESLEDALAAEAGGADRIELCSNLEVGGLTPSLGLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRE 83 (201)
T ss_dssp EEEESSHHHHHHHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 34566788898888777766666665667999999999998874 45554 44443332 1 1121 1233444
Q ss_pred hcCCccccCCCC
Q 013317 398 LATGQIKTGAPC 409 (445)
Q Consensus 398 ~~~~~~~~G~~~ 409 (445)
.++.-+.+|.+.
T Consensus 84 ~GadG~VfG~L~ 95 (201)
T PF03932_consen 84 LGADGFVFGALT 95 (201)
T ss_dssp TT-SEEEE--BE
T ss_pred cCCCeeEEEeEC
Confidence 577777788764
No 269
>PRK05826 pyruvate kinase; Provisional
Probab=22.75 E-value=4.3e+02 Score=27.90 Aligned_cols=123 Identities=14% Similarity=0.242 Sum_probs=72.8
Q ss_pred cChHHHHHHHHHhhhcCCeeEEECCCC--ccCHHHHHHHHHHhCC-ceEEEec-cccccCHHHHHHHHhcCCCCEEEecc
Q 013317 279 VSGDGLKNVYRSFISDHPIVSIEDPFD--QDDWEHYAELTGKIGR-HVQIVGD-DLLVTNPKRVEKAIKEKTCNALLLKV 354 (445)
Q Consensus 279 ~t~~~~i~~~~~~~~~~~i~~iEdP~~--~~D~~~~~~L~~~~~~-~~pI~gd-e~~~~~~~~~~~~i~~~a~d~v~ik~ 354 (445)
+|..+.-+. ... -+.++.||==||- ++|....+++.+..+. ++.|+.- |. ....+.+...++. +|++.+-.
T Consensus 171 lte~D~~~i-~~a-ld~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiakIEt-~eav~nldeI~~~--~DgImIgr 245 (465)
T PRK05826 171 LTEKDKADI-KFA-AEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKIER-AEAVDNIDEIIEA--SDGIMVAR 245 (465)
T ss_pred CChhhHHHH-HHH-HHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEEEcC-HHHHHhHHHHHHH--cCEEEECc
Confidence 444444332 333 3578889988984 4566666666555443 4555332 22 2234455555554 89999765
Q ss_pred Ccccc-------HHHHHHHHHHHHHcCCcEEecCCCCCChh-------HHHHHHHhhh--cCCccccC
Q 013317 355 NQIGS-------VTESIEAVKMAKRAGWGVMASHRSGETED-------TFIADLSVGL--ATGQIKTG 406 (445)
Q Consensus 355 ~k~GG-------it~a~~i~~~A~~~g~~~~~~~~~~et~~-------~~~~~la~a~--~~~~~~~G 406 (445)
+..|. ..-..++++.|+++|.++++...+.||.. +=+.|+|-|. ++.-+.+.
T Consensus 246 gDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS 313 (465)
T PRK05826 246 GDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLS 313 (465)
T ss_pred chhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEec
Confidence 53321 22336788899999999988876666532 2345666665 66655543
No 270
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=22.63 E-value=1.5e+02 Score=23.85 Aligned_cols=27 Identities=15% Similarity=0.388 Sum_probs=17.2
Q ss_pred cceeEEEEEEEecCCCCCeEEEEEEeCC
Q 013317 2 VTINAVKARQIFDSRGNPTVEVDVSLSD 29 (445)
Q Consensus 2 ~~I~~v~~~~i~~~~g~~~v~V~V~td~ 29 (445)
|+||+|+.+++... |+---++.|+-|+
T Consensus 1 M~ITdVri~~~~~~-g~lka~asit~dd 27 (94)
T PRK13259 1 MEVTDVRLRKVNTE-GRMKAIVSITFDN 27 (94)
T ss_pred CeEEEEEEEEeCCC-CcEEEEEEEEECC
Confidence 69999999999543 4322344554444
No 271
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=22.57 E-value=3.1e+02 Score=26.85 Aligned_cols=65 Identities=6% Similarity=0.104 Sum_probs=48.0
Q ss_pred HHHHHHHhCCceEE--EeccccccCHHHHHHHHhcCCCCEEEeccCcc---ccHHHHHHHHHHHHHcCCcE--EecC
Q 013317 312 YAELTGKIGRHVQI--VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI---GSVTESIEAVKMAKRAGWGV--MASH 381 (445)
Q Consensus 312 ~~~L~~~~~~~~pI--~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~---GGit~a~~i~~~A~~~g~~~--~~~~ 381 (445)
...++++.+ +|| =.|. ..+.+.+++.++.+ .+.|++|-+.. -=|..+++++++|+++|+.+ =+||
T Consensus 66 ~~~~a~~~~--VPValHLDH--g~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~ 137 (286)
T PRK12738 66 CSAYSTTYN--MPLALHLDH--HESLDDIRRKVHAG-VRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGR 137 (286)
T ss_pred HHHHHHHCC--CCEEEECCC--CCCHHHHHHHHHcC-CCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 455555666 665 5675 35789999999875 58999998764 23667899999999999887 3455
No 272
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=22.57 E-value=4.1e+02 Score=26.04 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCcc---ccHHHHHHHHHHHHHcCCcE
Q 013317 309 WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI---GSVTESIEAVKMAKRAGWGV 377 (445)
Q Consensus 309 ~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~---GGit~a~~i~~~A~~~g~~~ 377 (445)
....+.+.++.+..+||+.-=-...+.+.+++.++.+. +.|++|-+.. --|..+++++++|+++|+.+
T Consensus 64 ~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~Gf-tSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 134 (286)
T PRK08610 64 VKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGF-TSVMIDASHSPFEENVATTKKVVEYAHEKGVSV 134 (286)
T ss_pred HHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcCC-CEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
No 273
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=22.52 E-value=3.3e+02 Score=27.52 Aligned_cols=66 Identities=9% Similarity=0.132 Sum_probs=46.2
Q ss_pred HHHHHHHhCCceEE--EeccccccC--HHHHHHHHhcC----------CCCEEEeccCcccc---HHHHHHHHHHHHHcC
Q 013317 312 YAELTGKIGRHVQI--VGDDLLVTN--PKRVEKAIKEK----------TCNALLLKVNQIGS---VTESIEAVKMAKRAG 374 (445)
Q Consensus 312 ~~~L~~~~~~~~pI--~gde~~~~~--~~~~~~~i~~~----------a~d~v~ik~~k~GG---it~a~~i~~~A~~~g 374 (445)
...+.++.+ +|| =.|.. ++ .+.++++++.+ .++.|++|-+..-= |.-+++++++|+.+|
T Consensus 84 v~~~A~~~~--VPValHLDHg--~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~G 159 (350)
T PRK09197 84 VHEVAEHYG--VPVILHTDHC--AKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAG 159 (350)
T ss_pred HHHHHHHCC--CCEEEECCCC--CCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 445556666 665 45643 45 56677777655 38889999887643 677899999999999
Q ss_pred CcE--EecC
Q 013317 375 WGV--MASH 381 (445)
Q Consensus 375 ~~~--~~~~ 381 (445)
+.+ -+||
T Consensus 160 vsVEaELG~ 168 (350)
T PRK09197 160 MTLEIELGV 168 (350)
T ss_pred CEEEEEEec
Confidence 887 3444
No 274
>smart00642 Aamy Alpha-amylase domain.
Probab=22.52 E-value=83 Score=28.01 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=24.7
Q ss_pred CEEEeccCccccHHHHHHHHHHHHHcCCcEEe
Q 013317 348 NALLLKVNQIGSVTESIEAVKMAKRAGWGVMA 379 (445)
Q Consensus 348 d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~ 379 (445)
|...++. +.|+..+.+++++.|+++|+++++
T Consensus 58 d~~~i~~-~~Gt~~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 58 DYKQIDP-RFGTMEDFKELVDAAHARGIKVIL 88 (166)
T ss_pred ccCCCCc-ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 3334443 679999999999999999999864
No 275
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=22.50 E-value=1.4e+02 Score=28.36 Aligned_cols=135 Identities=17% Similarity=0.199 Sum_probs=76.1
Q ss_pred HHHHHHHHhcCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCC---ee--EE-ECC
Q 013317 230 ELLKTAIAKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHP---IV--SI-EDP 303 (445)
Q Consensus 230 ~~v~~ai~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~---i~--~i-EdP 303 (445)
++|+++-+.-|-+ -+-+.||+-.. ++.+++.|++-..+. ..+.+|++-++++. +++.+ |. .+ -|-
T Consensus 111 ~lI~~~a~~FGsQ-ciVvaIDakr~--~~g~~~~~~v~~~gG--r~~t~~d~~~Wa~~----~e~~GAGEIlLtsmD~DG 181 (256)
T COG0107 111 ELITEAADRFGSQ-CIVVAIDAKRV--PDGENGWYEVFTHGG--REDTGLDAVEWAKE----VEELGAGEILLTSMDRDG 181 (256)
T ss_pred HHHHHHHHHhCCc-eEEEEEEeeec--cCCCCCcEEEEecCC--CcCCCcCHHHHHHH----HHHcCCceEEEeeecccc
Confidence 4566665555521 37888999421 111244666532221 12345666665443 34443 22 22 122
Q ss_pred CC-ccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEec-cCccccHHHHHHHHHHHHHcCCcE
Q 013317 304 FD-QDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK-VNQIGSVTESIEAVKMAKRAGWGV 377 (445)
Q Consensus 304 ~~-~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik-~~k~GGit~a~~i~~~A~~~g~~~ 377 (445)
.. --|++..+.++...+ +|+++.-- +.+++.|.+.+..+.+|++.-- +=..| .....++-.+..++|+++
T Consensus 182 tk~GyDl~l~~~v~~~v~--iPvIASGG-aG~~ehf~eaf~~~~adAaLAAsiFH~~-~~~i~evK~yL~~~gi~V 253 (256)
T COG0107 182 TKAGYDLELTRAVREAVN--IPVIASGG-AGKPEHFVEAFTEGKADAALAASIFHFG-EITIGEVKEYLAEQGIEV 253 (256)
T ss_pred cccCcCHHHHHHHHHhCC--CCEEecCC-CCcHHHHHHHHHhcCccHHHhhhhhhcC-cccHHHHHHHHHHcCCCc
Confidence 22 238999999999998 99876655 5789999999988877765422 22222 223334445556666664
No 276
>PTZ00300 pyruvate kinase; Provisional
Probab=22.28 E-value=4.4e+02 Score=27.70 Aligned_cols=140 Identities=11% Similarity=0.127 Sum_probs=80.4
Q ss_pred cChHHHHHHHHHhhhcCCeeEEECCCC--ccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCc
Q 013317 279 VSGDGLKNVYRSFISDHPIVSIEDPFD--QDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 356 (445)
Q Consensus 279 ~t~~~~i~~~~~~~~~~~i~~iEdP~~--~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k 356 (445)
.+..+..+. .. .-+.++.||==||- ++|....+++....+.+++|++-=......+.+...+ ..+|++.+-...
T Consensus 145 ltekD~~dI-~~-ald~gvd~I~~SfVrsaeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~--~~~DgImVaRGD 220 (454)
T PTZ00300 145 VSAKDCADL-QF-GVEQGVDMIFASFIRSAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSII--EESDGIMVARGD 220 (454)
T ss_pred CChhhHHHH-HH-HHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHH--HhCCEEEEecch
Confidence 344444332 32 33577888888884 3444444444433333466654411122334444555 679999987654
Q ss_pred ccc---H----HHHHHHHHHHHHcCCcEEecCCCCCChh-------HHHHHHHhhh--cCCccccCC-----CCCchhHH
Q 013317 357 IGS---V----TESIEAVKMAKRAGWGVMASHRSGETED-------TFIADLSVGL--ATGQIKTGA-----PCRSERLA 415 (445)
Q Consensus 357 ~GG---i----t~a~~i~~~A~~~g~~~~~~~~~~et~~-------~~~~~la~a~--~~~~~~~G~-----~~~~er~~ 415 (445)
.|- + .--+++++.|+++|.++++...+.||.. +=..|+|-|. |+..+.+.+ -...|-+.
T Consensus 221 Lgvei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~ 300 (454)
T PTZ00300 221 LGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQ 300 (454)
T ss_pred hhhhcChHHHHHHHHHHHHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHH
Confidence 432 2 2346788899999999999998777643 2355776665 666666522 22445555
Q ss_pred HHHHHHH
Q 013317 416 KYNQLLR 422 (445)
Q Consensus 416 k~n~ll~ 422 (445)
-.++..+
T Consensus 301 ~m~~I~~ 307 (454)
T PTZ00300 301 YMARICL 307 (454)
T ss_pred HHHHHHH
Confidence 5555443
No 277
>PLN02623 pyruvate kinase
Probab=22.25 E-value=5e+02 Score=28.23 Aligned_cols=140 Identities=6% Similarity=0.094 Sum_probs=80.7
Q ss_pred CcChHHHHHHHHHhhhcCCeeEEECCCC--ccCHHHHHHHHHHhCCceEEEec-cccccCHHHHHHHHhcCCCCEEEecc
Q 013317 278 KVSGDGLKNVYRSFISDHPIVSIEDPFD--QDDWEHYAELTGKIGRHVQIVGD-DLLVTNPKRVEKAIKEKTCNALLLKV 354 (445)
Q Consensus 278 ~~t~~~~i~~~~~~~~~~~i~~iEdP~~--~~D~~~~~~L~~~~~~~~pI~gd-e~~~~~~~~~~~~i~~~a~d~v~ik~ 354 (445)
.+|..+.-+. ++.-++++.||=--|- ++|+...+++.+..+..+.|+.- |. ....+.+...++ .+|++.+-.
T Consensus 275 ~lTekD~~di--~f~~~~~vD~ialSFVr~a~DV~~~r~~l~~~~~~~~iiakIEt-~eaVeNldeIl~--g~DgImIgr 349 (581)
T PLN02623 275 SITEKDWEDI--KFGVENKVDFYAVSFVKDAQVVHELKDYLKSCNADIHVIVKIES-ADSIPNLHSIIT--ASDGAMVAR 349 (581)
T ss_pred CCCHHHHHHH--HHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCcceEEEEECC-HHHHHhHHHHHH--hCCEEEECc
Confidence 3566665442 2333456666655653 46777777777665544555333 22 233455556665 899999876
Q ss_pred Cccc---cHH----HHHHHHHHHHHcCCcEEecCCCCCChh----H-----HHHHHHhhhcCCccccCC-----CCCchh
Q 013317 355 NQIG---SVT----ESIEAVKMAKRAGWGVMASHRSGETED----T-----FIADLSVGLATGQIKTGA-----PCRSER 413 (445)
Q Consensus 355 ~k~G---Git----~a~~i~~~A~~~g~~~~~~~~~~et~~----~-----~~~~la~a~~~~~~~~G~-----~~~~er 413 (445)
+..| |+. -..++++.|+++|+++.+...+.||.. . .-+.-++..|+.++.+++ -...|-
T Consensus 350 gDLgvelg~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPvea 429 (581)
T PLN02623 350 GDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKA 429 (581)
T ss_pred chhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHH
Confidence 5433 222 346778889999999987665555422 1 122234445777887764 224455
Q ss_pred HHHHHHHHH
Q 013317 414 LAKYNQLLR 422 (445)
Q Consensus 414 ~~k~n~ll~ 422 (445)
+.-.++..+
T Consensus 430 V~~m~~I~~ 438 (581)
T PLN02623 430 VKVMHTVAL 438 (581)
T ss_pred HHHHHHHHH
Confidence 555666433
No 278
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=22.23 E-value=6.6e+02 Score=23.63 Aligned_cols=75 Identities=12% Similarity=0.072 Sum_probs=43.5
Q ss_pred HHHHHHHHhCCceEE--Eeccc-cccCHHHHHHHHhcCCCCEEEec-cCccccHHHHHHHHHHHHHcCCcEEecCCCCCC
Q 013317 311 HYAELTGKIGRHVQI--VGDDL-LVTNPKRVEKAIKEKTCNALLLK-VNQIGSVTESIEAVKMAKRAGWGVMASHRSGET 386 (445)
Q Consensus 311 ~~~~L~~~~~~~~pI--~gde~-~~~~~~~~~~~i~~~a~d~v~ik-~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et 386 (445)
-.+++++.++ +|+ ++-=. ++.++.++.+....-.+|.+.+. +.- =...+..++.+.|+++|+.+.+--. ..|
T Consensus 65 ~v~~vr~~~~--~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~-e~~~~~~~~~~~~~~~Gl~~~~~v~-p~T 140 (244)
T PRK13125 65 LLEEVRKDVS--VPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLI-DYPDDLEKYVEIIKNKGLKPVFFTS-PKF 140 (244)
T ss_pred HHHHHhccCC--CCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCC-CcHHHHHHHHHHHHHcCCCEEEEEC-CCC
Confidence 3455555555 675 22110 24567776655555556666654 321 1235778899999999999865553 445
Q ss_pred hhH
Q 013317 387 EDT 389 (445)
Q Consensus 387 ~~~ 389 (445)
...
T Consensus 141 ~~e 143 (244)
T PRK13125 141 PDL 143 (244)
T ss_pred CHH
Confidence 433
No 279
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=22.02 E-value=1.3e+02 Score=23.69 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=16.9
Q ss_pred cceeEEEEEEEecCCCCCeEEEEEEeCCC
Q 013317 2 VTINAVKARQIFDSRGNPTVEVDVSLSDG 30 (445)
Q Consensus 2 ~~I~~v~~~~i~~~~g~~~v~V~V~td~G 30 (445)
|+||+|+.+.+.+. ++---++.|+.|+.
T Consensus 1 M~itdVri~~~~~~-~~lka~asV~~dd~ 28 (84)
T PF04026_consen 1 MKITDVRIRKIEPE-GKLKAFASVTFDDC 28 (84)
T ss_dssp --EEEEEEEETTSS-SSEEEEEEEEETTT
T ss_pred CccEEEEEEEecCC-CCEEEEEEEEECCE
Confidence 69999999998654 43334555555554
No 280
>PRK08185 hypothetical protein; Provisional
Probab=21.91 E-value=4e+02 Score=26.06 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=43.0
Q ss_pred HHHHHHHhCCceEE--EeccccccCHHHHHHHHhcCCCCEEEeccCccc---cHHHHHHHHHHHHHcCCcE
Q 013317 312 YAELTGKIGRHVQI--VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG---SVTESIEAVKMAKRAGWGV 377 (445)
Q Consensus 312 ~~~L~~~~~~~~pI--~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~G---Git~a~~i~~~A~~~g~~~ 377 (445)
...+.++.+ +|| =.|. ..+.+.++++++.+ .+.|++|-+..- =+..++++.++|+.+|+.+
T Consensus 60 ~~~~a~~~~--vPV~lHLDH--g~~~e~i~~ai~~G-f~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 60 VRERAKRSP--VPFVIHLDH--GATIEDVMRAIRCG-FTSVMIDGSLLPYEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred HHHHHHHCC--CCEEEECCC--CCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 344445555 554 5665 35688999998876 578999877542 3556788888999999876
No 281
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=21.90 E-value=2.9e+02 Score=25.52 Aligned_cols=106 Identities=18% Similarity=0.152 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcC-CCCEEEeccCc-----ccc----HHHHHHHHHHHHHcCCcE
Q 013317 308 DWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEK-TCNALLLKVNQ-----IGS----VTESIEAVKMAKRAGWGV 377 (445)
Q Consensus 308 D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~-a~d~v~ik~~k-----~GG----it~a~~i~~~A~~~g~~~ 377 (445)
+.+..+++... +-...++|-.. .++++.++++.+.- ..=.+.+|+-. .|. -.+..+.++.++..|...
T Consensus 85 ~~ed~~~~~~~-Ga~~vilg~~~-l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ 162 (233)
T PRK00748 85 SLETVEALLDA-GVSRVIIGTAA-VKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKA 162 (233)
T ss_pred CHHHHHHHHHc-CCCEEEECchH-HhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCE
Confidence 45555555543 21134566665 46666676665542 11223444310 111 123456677777777775
Q ss_pred EecCCC-C-----CChhHHHHHHHhhhcCCccccCCCCCchhHH
Q 013317 378 MASHRS-G-----ETEDTFIADLSVGLATGQIKTGAPCRSERLA 415 (445)
Q Consensus 378 ~~~~~~-~-----et~~~~~~~la~a~~~~~~~~G~~~~~er~~ 415 (445)
++-|.. . +.....+-.+.-.+..+.+-.|+....+.+.
T Consensus 163 ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~ 206 (233)
T PRK00748 163 IIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIK 206 (233)
T ss_pred EEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHH
Confidence 455521 1 1123344555544456777788877655543
No 282
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=21.40 E-value=7.2e+02 Score=23.73 Aligned_cols=104 Identities=15% Similarity=0.103 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHhhhcCCeeEEECCCCccC-------------------------HHHHHHHHHH-hCCceEEEecccccc
Q 013317 280 SGDGLKNVYRSFISDHPIVSIEDPFDQDD-------------------------WEHYAELTGK-IGRHVQIVGDDLLVT 333 (445)
Q Consensus 280 t~~~~i~~~~~~~~~~~i~~iEdP~~~~D-------------------------~~~~~~L~~~-~~~~~pI~gde~~~~ 333 (445)
+.+..++.+. .+.+.+..+||=-+|-.| ++..+++++. .+ +|+.. ..+.
T Consensus 22 ~~~~~~~~~~-~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~--~plv~--m~Y~ 96 (256)
T TIGR00262 22 TLETSLEIIK-TLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPN--IPIGL--LTYY 96 (256)
T ss_pred CHHHHHHHHH-HHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC--CCEEE--EEec
Confidence 4555666544 456677888885544322 2334555544 44 77642 2234
Q ss_pred CH------HHHH-HHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChhHHHHH
Q 013317 334 NP------KRVE-KAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETEDTFIAD 393 (445)
Q Consensus 334 ~~------~~~~-~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~~~~~~ 393 (445)
|+ +++- ++.+.+.--++.+|+. +.+..+..+.|+++|+..++-. ...|....+..
T Consensus 97 Npi~~~G~e~f~~~~~~aGvdgviipDlp----~ee~~~~~~~~~~~gl~~i~lv-~P~T~~eri~~ 158 (256)
T TIGR00262 97 NLIFRKGVEEFYAKCKEVGVDGVLVADLP----LEESGDLVEAAKKHGVKPIFLV-APNADDERLKQ 158 (256)
T ss_pred cHHhhhhHHHHHHHHHHcCCCEEEECCCC----hHHHHHHHHHHHHCCCcEEEEE-CCCCCHHHHHH
Confidence 55 5544 4555566556777774 4788999999999998865444 23444443333
No 283
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=21.32 E-value=1.2e+02 Score=29.84 Aligned_cols=60 Identities=28% Similarity=0.288 Sum_probs=44.4
Q ss_pred CCeeEEE-CCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHc
Q 013317 295 HPIVSIE-DPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRA 373 (445)
Q Consensus 295 ~~i~~iE-dP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~ 373 (445)
-+..||- -|-.--+..+|.+|.++-+ +||+||+. .| +.-.+-+-++.+++++|+.+
T Consensus 199 ~g~~fvN~tP~~~a~~P~l~ela~~~g--vpi~GdD~--KT-------------------~lAAplvlDLirl~~la~r~ 255 (295)
T PF07994_consen 199 AGVPFVNGTPSNIADDPALVELAEEKG--VPIAGDDG--KT-------------------PLAAPLVLDLIRLAKLALRR 255 (295)
T ss_dssp TTEEEEE-SSSTTTTSHHHHHHHHHHT--EEEEESSB--S--------------------HHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCeEeccCccccCCHHHHHHHHHcC--CCeecchH--hh-------------------hhhhHHHHHHHHHHHHHHHc
Confidence 4666663 3444445679999999998 99999996 23 45557788999999999997
Q ss_pred CCcE
Q 013317 374 GWGV 377 (445)
Q Consensus 374 g~~~ 377 (445)
|+.=
T Consensus 256 g~~G 259 (295)
T PF07994_consen 256 GMGG 259 (295)
T ss_dssp TS-E
T ss_pred CCCC
Confidence 7663
No 284
>PRK09206 pyruvate kinase; Provisional
Probab=21.12 E-value=5.4e+02 Score=27.21 Aligned_cols=141 Identities=11% Similarity=0.130 Sum_probs=83.8
Q ss_pred cChHHHHHHHHHhhhcCCeeEEECCCC--ccCHHHHHHHHHHhC-CceEEEeccccccCHHHHHHHHhcCCCCEEEeccC
Q 013317 279 VSGDGLKNVYRSFISDHPIVSIEDPFD--QDDWEHYAELTGKIG-RHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN 355 (445)
Q Consensus 279 ~t~~~~i~~~~~~~~~~~i~~iEdP~~--~~D~~~~~~L~~~~~-~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~ 355 (445)
+|..+.-+. ++.-++++.||=--|- ++|...++++.+..+ .+++|++-=-.....+++...++. +|++.+-.+
T Consensus 170 ltekD~~di--~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~--~DgImVaRG 245 (470)
T PRK09206 170 LAEKDKQDL--IFGCEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEA--SDGIMVARG 245 (470)
T ss_pred CCHHHHHHH--HHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHh--CCEEEECcc
Confidence 566665442 2333566666666653 467777777776653 246664441112234455555554 999998765
Q ss_pred cccc---H----HHHHHHHHHHHHcCCcEEecCCCCCChh-------HHHHHHHhhh--cCCccccCC-----CCCchhH
Q 013317 356 QIGS---V----TESIEAVKMAKRAGWGVMASHRSGETED-------TFIADLSVGL--ATGQIKTGA-----PCRSERL 414 (445)
Q Consensus 356 k~GG---i----t~a~~i~~~A~~~g~~~~~~~~~~et~~-------~~~~~la~a~--~~~~~~~G~-----~~~~er~ 414 (445)
..|- + .--.++++.|+++|.++++...+.||.. +=+.|+|-|. |+.-+.+.+ ....|-+
T Consensus 246 DLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~yPveaV 325 (470)
T PRK09206 246 DLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAV 325 (470)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCCCHHHHH
Confidence 4432 2 2346788899999999999887777643 2245766664 566655422 2245555
Q ss_pred HHHHHHHHH
Q 013317 415 AKYNQLLRI 423 (445)
Q Consensus 415 ~k~n~ll~i 423 (445)
.-.++..+-
T Consensus 326 ~~m~~I~~~ 334 (470)
T PRK09206 326 SIMATICER 334 (470)
T ss_pred HHHHHHHHH
Confidence 556665543
No 285
>PRK08960 hypothetical protein; Provisional
Probab=21.10 E-value=3.4e+02 Score=27.27 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=55.3
Q ss_pred HHHHHHHHHh-hhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCc-ccc
Q 013317 282 DGLKNVYRSF-ISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ-IGS 359 (445)
Q Consensus 282 ~~~i~~~~~~-~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k-~GG 359 (445)
.+++..+... +++-+-..+++|..+.....+..+..+. ..+|+-.+..+.-+++++.+.++.+..-++...++. .|.
T Consensus 102 ~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~-~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~ 180 (387)
T PRK08960 102 SGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVEGAA-QLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGT 180 (387)
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCeE-EEEecCcccCCCCCHHHHHHHhCccceEEEEECCCCCCCc
Confidence 3455444433 3445677899998766544443332221 013331121112357888887766555455555533 444
Q ss_pred H---HHHHHHHHHHHHcCCcEEecC
Q 013317 360 V---TESIEAVKMAKRAGWGVMASH 381 (445)
Q Consensus 360 i---t~a~~i~~~A~~~g~~~~~~~ 381 (445)
+ .+..+++++|+++|+.+++..
T Consensus 181 ~~~~~~~~~l~~~~~~~~~~li~De 205 (387)
T PRK08960 181 LLSRDELAALSQALRARGGHLVVDE 205 (387)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEEEc
Confidence 3 467788889999998876554
No 286
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=20.95 E-value=3.3e+02 Score=22.20 Aligned_cols=49 Identities=22% Similarity=0.193 Sum_probs=39.4
Q ss_pred CHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHc---CCcEEecCC
Q 013317 334 NPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRA---GWGVMASHR 382 (445)
Q Consensus 334 ~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~---g~~~~~~~~ 382 (445)
.++++.+.+.+...|+|.+-.+....+..+.++++..++. ++.+++|..
T Consensus 38 ~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~ 89 (119)
T cd02067 38 PPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGA 89 (119)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 4778888888888999999888777888888888888887 456777774
No 287
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=20.62 E-value=8.5e+02 Score=24.28 Aligned_cols=109 Identities=11% Similarity=0.162 Sum_probs=51.8
Q ss_pred HHhhhcCCeeE-EECCCCccCHHHHHHHHHHhCC-ceEEEeccccc--cCHHHHHHHHhcCC-CCEEEeccCccccHHHH
Q 013317 289 RSFISDHPIVS-IEDPFDQDDWEHYAELTGKIGR-HVQIVGDDLLV--TNPKRVEKAIKEKT-CNALLLKVNQIGSVTES 363 (445)
Q Consensus 289 ~~~~~~~~i~~-iEdP~~~~D~~~~~~L~~~~~~-~~pI~gde~~~--~~~~~~~~~i~~~a-~d~v~ik~~k~GGit~a 363 (445)
.+.+.++++.. +-. +++++++.+ + ++... .+++ +=-.-+ ...+++..+++.+. +|++.+|+.+ |=-...
T Consensus 51 A~~a~~~G~~~i~hK-~~~E~~~sf--v-rk~k~~~L~v-~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ah-g~s~~~ 124 (321)
T TIGR01306 51 AEQLAENGYFYIMHR-FDEESRIPF--I-KDMQERGLFA-SISVGVKACEYEFVTQLAEEALTPEYITIDIAH-GHSNSV 124 (321)
T ss_pred HHHHHHcCCEEEEec-CCHHHHHHH--H-HhccccccEE-EEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCcc-CchHHH
Confidence 44455667443 333 655655554 3 33321 2333 211111 12355666777764 8999999977 222333
Q ss_pred HHHHHH-HHHcCCcEEecCCCCCChhHHHHHHHhhhcCCccccC
Q 013317 364 IEAVKM-AKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTG 406 (445)
Q Consensus 364 ~~i~~~-A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G 406 (445)
++.++. .+.+..+.++..+. .|... +.+| ...++..++.|
T Consensus 125 ~~~i~~i~~~~p~~~vi~GnV-~t~e~-a~~l-~~aGad~I~V~ 165 (321)
T TIGR01306 125 INMIKHIKTHLPDSFVIAGNV-GTPEA-VREL-ENAGADATKVG 165 (321)
T ss_pred HHHHHHHHHhCCCCEEEEecC-CCHHH-HHHH-HHcCcCEEEEC
Confidence 443443 33444453333322 22222 1222 23466677665
No 288
>PRK14725 pyruvate kinase; Provisional
Probab=20.61 E-value=9.2e+02 Score=26.37 Aligned_cols=142 Identities=14% Similarity=0.178 Sum_probs=81.7
Q ss_pred CcChHHHHHHHHHhhhcCCeeEEECCCC--ccCHHHHHHHHHHhC-CceEEEeccccccCHHHHHHHHhc---CCCCEEE
Q 013317 278 KVSGDGLKNVYRSFISDHPIVSIEDPFD--QDDWEHYAELTGKIG-RHVQIVGDDLLVTNPKRVEKAIKE---KTCNALL 351 (445)
Q Consensus 278 ~~t~~~~i~~~~~~~~~~~i~~iEdP~~--~~D~~~~~~L~~~~~-~~~pI~gde~~~~~~~~~~~~i~~---~a~d~v~ 351 (445)
.+|..+.-+. . +.-++ +.||--.|- ++|+...+++-.+.+ .+++|++-=-.....+.+.+++.. ...|+|+
T Consensus 429 ~LTekD~~dl-~-f~~~~-vD~ValSFVrs~~DV~~lr~~L~~~g~~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIM 505 (608)
T PRK14725 429 ALTDKDLEDL-A-FVAKH-ADIVALSFVRSPEDVRLLLDALEKLGADDLGVVLKIETRRAFENLPRILLEAMRHPRFGVM 505 (608)
T ss_pred CCCHHHHHHH-H-HHHHh-CCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEE
Confidence 3566665442 2 22234 566666663 467666666655432 247776652111122333333332 3469998
Q ss_pred eccCccc---cHHHH----HHHHHHHHHcCCcEEecCCCCCChh-------HHHHHHHhhhcCCccccC-CCCCchhHHH
Q 013317 352 LKVNQIG---SVTES----IEAVKMAKRAGWGVMASHRSGETED-------TFIADLSVGLATGQIKTG-APCRSERLAK 416 (445)
Q Consensus 352 ik~~k~G---Git~a----~~i~~~A~~~g~~~~~~~~~~et~~-------~~~~~la~a~~~~~~~~G-~~~~~er~~k 416 (445)
|-=+..| |+.+. ++|+..|+++|+++++...+.||.. +=+.|+|.|.++..+.+. ++...|-+.-
T Consensus 506 IARGDLgvEi~~e~lp~iQk~Ii~~c~~~~kPVI~ATQmLESM~~~p~PTRAEvtDVAnAvgaD~VMLS~G~yPveAV~~ 585 (608)
T PRK14725 506 IARGDLAVEVGFERLAEVQEEILWLCEAAHVPVIWATQVLESLAKKGLPSRAEITDAAMALRAECVMLNKGPHIVEAVRV 585 (608)
T ss_pred EECCccccccCHHHHHHHHHHHHHHHHHcCCCEEEEcchHhhhccCCCCCchhHHHHHhhhcCCEEeecCCCCHHHHHHH
Confidence 7544333 33333 5677899999999999887777642 336688888888776653 3335556666
Q ss_pred HHHHHH
Q 013317 417 YNQLLR 422 (445)
Q Consensus 417 ~n~ll~ 422 (445)
.++.++
T Consensus 586 l~~I~~ 591 (608)
T PRK14725 586 LDDILR 591 (608)
T ss_pred HHHHHH
Confidence 666443
No 289
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=20.61 E-value=2.9e+02 Score=27.87 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=24.8
Q ss_pred CCCCCCccCchHHHHHHHHHHHhcCCCcceEEEEeccc
Q 013317 216 GGFAPNIQESYEGFELLKTAIAKGGYIGKIVIGMDVAA 253 (445)
Q Consensus 216 g~~~~~~~~~~~~l~~v~~ai~~~G~~~~i~l~vD~~a 253 (445)
||-.|+++ .+.++...+++++.|+. -.|+|||+.
T Consensus 234 Gg~~PNY~--~~~v~~a~~~l~~~~l~--~~imVDcSH 267 (348)
T PRK12756 234 GGKKPNYH--AEDIAAACDTLREFDLP--EHLVVDFSH 267 (348)
T ss_pred CCCCCCCC--HHHHHHHHHHHHHCCCC--CcEEEECCC
Confidence 44458877 66777777888888764 569999963
No 290
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=20.58 E-value=7.8e+02 Score=23.80 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCCcceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhc-CC-eeE--EE--C
Q 013317 229 FELLKTAIAKGGYIGKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISD-HP-IVS--IE--D 302 (445)
Q Consensus 229 l~~v~~ai~~~G~~~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~-~~-i~~--iE--d 302 (445)
.+.++++++.-|. ..+-+.+|+-. . ++.|.+..++- .....+++.+++. ++.+. .+ +.+ |. -
T Consensus 122 p~~v~~~~~~~G~-~~IvvsiD~k~-----~-~g~~~Va~~GW--~~~t~~~~~e~~~---~~~~~g~~eii~TdI~rDG 189 (262)
T PLN02446 122 LERLKDLVRLVGK-QRLVLDLSCRK-----K-DGRYYVVTDRW--QKFSDLAVDEETL---EFLAAYCDEFLVHGVDVEG 189 (262)
T ss_pred HHHHHHHHHHhCC-CCEEEEEEEEe-----c-CCCEEEEECCC--cccCCCCHHHHHH---HHHHhCCCEEEEEEEcCCC
Confidence 3456677766652 36999999941 0 13343321110 0123455565432 22222 22 221 21 1
Q ss_pred CCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcC
Q 013317 303 PFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEK 345 (445)
Q Consensus 303 P~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~ 345 (445)
-+.--|++.+++|++.+. +||++--- +++.+|++++.+.+
T Consensus 190 tl~G~d~el~~~l~~~~~--ipVIASGG-v~sleDi~~L~~~g 229 (262)
T PLN02446 190 KRLGIDEELVALLGEHSP--IPVTYAGG-VRSLDDLERVKVAG 229 (262)
T ss_pred cccCCCHHHHHHHHhhCC--CCEEEECC-CCCHHHHHHHHHcC
Confidence 233348999999999988 88743322 56799999998765
No 291
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=20.54 E-value=4.5e+02 Score=25.78 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHh--CCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCcc---ccHHHHHHHHHHHHHcCCcE
Q 013317 309 WEHYAELTGKI--GRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI---GSVTESIEAVKMAKRAGWGV 377 (445)
Q Consensus 309 ~~~~~~L~~~~--~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~---GGit~a~~i~~~A~~~g~~~ 377 (445)
......+.++. + +||+.-=-...+.+.+++.++.+ ++.|++|-+.. ==|-.+++++++|+.+|+.+
T Consensus 64 ~~~~~~~a~~~~~~--VPV~lHLDHg~~~e~i~~ai~~G-ftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~V 134 (288)
T TIGR00167 64 SAMVKAMSEAYPYG--VPVALHLDHGASEEDCAQAVKAG-FSSVMIDGSHEPFEENIELTKKVVERAHKMGVSV 134 (288)
T ss_pred HHHHHHHHHhccCC--CcEEEECCCCCCHHHHHHHHHcC-CCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEE
No 292
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.53 E-value=7.3e+02 Score=23.47 Aligned_cols=91 Identities=7% Similarity=0.140 Sum_probs=51.6
Q ss_pred cceEEEEeccccccccccCcceeecccCCCCCCCCCcChHHHHHHHHHhhhcCCee-EEECCCC------ccCHHHHHHH
Q 013317 243 GKIVIGMDVAASEFYDRKDKTYDLNFKEENNDGSQKVSGDGLKNVYRSFISDHPIV-SIEDPFD------QDDWEHYAEL 315 (445)
Q Consensus 243 ~~i~l~vD~~a~~~~~~~~~~y~~~~~~~~~~~n~~~t~~~~i~~~~~~~~~~~i~-~iEdP~~------~~D~~~~~~L 315 (445)
.++-+.+|+-....+.. .|.- +..+++.++++. ++++++. +|=--+. -=|++.+++|
T Consensus 120 ~~ivvslD~k~g~v~~~---gw~~---------~~~~~~~e~~~~----~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l 183 (241)
T PRK14114 120 VEPVFSLDTRGGKVAFK---GWLA---------EEEIDPVSLLKR----LKEYGLEEIVHTEIEKDGTLQEHDFSLTRKI 183 (241)
T ss_pred CCEEEEEEccCCEEeeC---CCee---------cCCCCHHHHHHH----HHhcCCCEEEEEeechhhcCCCcCHHHHHHH
Confidence 46889999953332221 1211 234566665443 4555532 1222222 1388999999
Q ss_pred HHHhCCceEEEeccccccCHHHHHHHHhc-----CCCCEEEe
Q 013317 316 TGKIGRHVQIVGDDLLVTNPKRVEKAIKE-----KTCNALLL 352 (445)
Q Consensus 316 ~~~~~~~~pI~gde~~~~~~~~~~~~i~~-----~a~d~v~i 352 (445)
++.++ +||++.-- +++.+|+.++.+. +.++.+.+
T Consensus 184 ~~~~~--~pviasGG-v~s~~Dl~~l~~~~~~~~g~v~gviv 222 (241)
T PRK14114 184 AIEAE--VKVFAAGG-ISSENSLKTAQRVHRETNGLLKGVIV 222 (241)
T ss_pred HHHCC--CCEEEECC-CCCHHHHHHHHhcccccCCcEEEEEE
Confidence 99987 77632222 4679999998775 22555554
No 293
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=20.49 E-value=5.7e+02 Score=25.22 Aligned_cols=91 Identities=16% Similarity=0.122 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 013317 309 WEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRAGWGVMASHRSGETED 388 (445)
Q Consensus 309 ~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~g~~~~~~~~~~et~~ 388 (445)
.+.+++++++.+. .+|.-+ +.+.+++.++++.+ +|+|++|-+.. .++.+++.+.+. .+.+..+ |....
T Consensus 196 ~~av~~~r~~~~~-~kIeVE---v~sleea~ea~~~g-aDiI~LDn~s~---e~~~~av~~~~~-~~~ieaS---GGI~~ 263 (296)
T PRK09016 196 RQAVEKAFWLHPD-VPVEVE---VENLDELDQALKAG-ADIIMLDNFTT---EQMREAVKRTNG-RALLEVS---GNVTL 263 (296)
T ss_pred HHHHHHHHHhCCC-CCEEEE---eCCHHHHHHHHHcC-CCEEEeCCCCh---HHHHHHHHhhcC-CeEEEEE---CCCCH
Confidence 3567777776543 444222 45689999998866 59999998865 555555554432 3443333 33344
Q ss_pred HHHHHHHhhhcCCccccCCCCCch
Q 013317 389 TFIADLSVGLATGQIKTGAPCRSE 412 (445)
Q Consensus 389 ~~~~~la~a~~~~~~~~G~~~~~e 412 (445)
..+..+| .++..++-.|.+.-+-
T Consensus 264 ~ni~~yA-~tGVD~Is~galthsa 286 (296)
T PRK09016 264 ETLREFA-ETGVDFISVGALTKHV 286 (296)
T ss_pred HHHHHHH-hcCCCEEEeCccccCC
Confidence 4445554 3588888888876443
No 294
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=20.41 E-value=6.8e+02 Score=26.17 Aligned_cols=100 Identities=13% Similarity=0.245 Sum_probs=63.3
Q ss_pred ChHHHHHHHHHhhhcCCeeE-EECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHH-H---HHhcCCCCEEEecc
Q 013317 280 SGDGLKNVYRSFISDHPIVS-IEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVE-K---AIKEKTCNALLLKV 354 (445)
Q Consensus 280 t~~~~i~~~~~~~~~~~i~~-iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~-~---~i~~~a~d~v~ik~ 354 (445)
|...+..+|.+ ..+.+.. -=|..+|.-++.++.|..+++ +|+.+++.. .+|-++. + ..+...+|++.+|.
T Consensus 116 t~~KLA~~lkk--~~~kvllVaaD~~RpAA~eQL~~La~q~~--v~~f~~~~~-~~Pv~Iak~al~~ak~~~~DvvIvDT 190 (451)
T COG0541 116 TAGKLAKYLKK--KGKKVLLVAADTYRPAAIEQLKQLAEQVG--VPFFGSGTE-KDPVEIAKAALEKAKEEGYDVVIVDT 190 (451)
T ss_pred HHHHHHHHHHH--cCCceEEEecccCChHHHHHHHHHHHHcC--CceecCCCC-CCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 34455555544 3444443 468889999999999999999 999887542 3466553 2 34567789999998
Q ss_pred C-cc----ccHHHHHHHHHHHHHcCCcEEecCCCC
Q 013317 355 N-QI----GSVTESIEAVKMAKRAGWGVMASHRSG 384 (445)
Q Consensus 355 ~-k~----GGit~a~~i~~~A~~~g~~~~~~~~~~ 384 (445)
. |. .-+.|+.+|.+..+-.-+-.++..+.|
T Consensus 191 AGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G 225 (451)
T COG0541 191 AGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG 225 (451)
T ss_pred CCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 5 22 234555555555554445544554444
No 295
>PRK07094 biotin synthase; Provisional
Probab=20.36 E-value=8.1e+02 Score=23.92 Aligned_cols=106 Identities=17% Similarity=0.195 Sum_probs=59.6
Q ss_pred cChHHHHHHHHHhhhcCCee--EE---ECCCC-ccCHHHH-HHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEE
Q 013317 279 VSGDGLKNVYRSFISDHPIV--SI---EDPFD-QDDWEHY-AELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALL 351 (445)
Q Consensus 279 ~t~~~~i~~~~~~~~~~~i~--~i---EdP~~-~~D~~~~-~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ 351 (445)
++.++.++.... +.+.++. +| ++|.. .+++..+ +.+++..+ +.+...=. ..+.+.++.+.+.+ ++.+.
T Consensus 70 ls~eei~~~~~~-~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~--l~i~~~~g-~~~~e~l~~Lk~aG-~~~v~ 144 (323)
T PRK07094 70 LSPEEILECAKK-AYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKELD--VAITLSLG-ERSYEEYKAWKEAG-ADRYL 144 (323)
T ss_pred CCHHHHHHHHHH-HHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHccCC--ceEEEecC-CCCHHHHHHHHHcC-CCEEE
Confidence 478888877544 4445533 33 46653 2333322 34443333 44422111 12466676666554 66665
Q ss_pred ecc-----------CccccHHHHHHHHHHHHHcCCcE----EecCCCCCChhHH
Q 013317 352 LKV-----------NQIGSVTESIEAVKMAKRAGWGV----MASHRSGETEDTF 390 (445)
Q Consensus 352 ik~-----------~k~GGit~a~~i~~~A~~~g~~~----~~~~~~~et~~~~ 390 (445)
+.+ .+-.+..+.++.++.+++.|+.+ ++|+ .+|+....
T Consensus 145 ~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGl-pget~ed~ 197 (323)
T PRK07094 145 LRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGL-PGQTLEDL 197 (323)
T ss_pred eccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEEC-CCCCHHHH
Confidence 533 34567889999999999999865 4444 46775543
No 296
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=20.20 E-value=7.5e+02 Score=23.49 Aligned_cols=122 Identities=15% Similarity=0.169 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCC--CCEEEeccCccc---------------cHHHHHHHHHHH
Q 013317 308 DWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKT--CNALLLKVNQIG---------------SVTESIEAVKMA 370 (445)
Q Consensus 308 D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a--~d~v~ik~~k~G---------------Git~a~~i~~~A 370 (445)
.++...++... +-.-.++|-+. ..++.-++++.+.-. .=++.+|+- .| .-....+.+..+
T Consensus 85 s~~d~~~l~~~-G~~~vvigs~~-~~~~~~~~~~~~~~~~~~i~vsiD~k-~g~~~~~~v~~~gw~~~~~~~~~e~~~~~ 161 (258)
T PRK01033 85 TLEQAKKIFSL-GVEKVSINTAA-LEDPDLITEAAERFGSQSVVVSIDVK-KNLGGKFDVYTHNGTKKLKKDPLELAKEY 161 (258)
T ss_pred CHHHHHHHHHC-CCCEEEEChHH-hcCHHHHHHHHHHhCCCcEEEEEEEe-cCCCCcEEEEEcCCeecCCCCHHHHHHHH
Confidence 44555555532 21134567765 467777777765421 225556652 22 112357788888
Q ss_pred HHcCCcEEecCCCC------CChhHHHHHHHhhhcCCccccCCCCCchhHHHHHHHHHHHHHhCCCccccCccC
Q 013317 371 KRAGWGVMASHRSG------ETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGPAAIYAGTKF 438 (445)
Q Consensus 371 ~~~g~~~~~~~~~~------et~~~~~~~la~a~~~~~~~~G~~~~~er~~k~n~ll~i~~~l~~~~~~~~~~~ 438 (445)
++.|+..++=|... ......+.++.-.+..+.+-.|+.+..+.+. ++-++.+-.++..|++|
T Consensus 162 ~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~------~l~~~~GvdgVivg~a~ 229 (258)
T PRK01033 162 EALGAGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIV------EAILNLGADAAAAGSLF 229 (258)
T ss_pred HHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHH------HHHHHCCCCEEEEccee
Confidence 88888866545211 1223455666666677888899988766653 33334455555666554
No 297
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=20.16 E-value=7.1e+02 Score=24.91 Aligned_cols=108 Identities=14% Similarity=0.234 Sum_probs=57.6
Q ss_pred HHhhhcCC-eeEEECCCCccCHHHHHHHHHHhCC-ceEEEeccccccCH---HHHHHHHhcCC-CCEEEeccCccccHHH
Q 013317 289 RSFISDHP-IVSIEDPFDQDDWEHYAELTGKIGR-HVQIVGDDLLVTNP---KRVEKAIKEKT-CNALLLKVNQIGSVTE 362 (445)
Q Consensus 289 ~~~~~~~~-i~~iEdP~~~~D~~~~~~L~~~~~~-~~pI~gde~~~~~~---~~~~~~i~~~a-~d~v~ik~~k~GGit~ 362 (445)
.+.+.+++ +..+-- +.+++...+. ++... .+ +++=-.. .++ +++..+++.+. +|++++|... |-...
T Consensus 54 A~~a~~~G~~~~~~k-~~~e~~~~~~---r~~~~~~l-~v~~~vg-~~~~~~~~~~~Lv~ag~~~d~i~iD~a~-gh~~~ 126 (326)
T PRK05458 54 AEWLAENGYFYIMHR-FDPEARIPFI---KDMHEQGL-IASISVG-VKDDEYDFVDQLAAEGLTPEYITIDIAH-GHSDS 126 (326)
T ss_pred HHHHHHcCCEEEEec-CCHHHHHHHH---Hhcccccc-EEEEEec-CCHHHHHHHHHHHhcCCCCCEEEEECCC-CchHH
Confidence 33445556 444444 5555555555 33321 13 3322221 123 55566677663 7999999998 66677
Q ss_pred HHHHHHHHHH-c-CCcEEecCCCCCChhHHHHHHHhhhcCCccccCC
Q 013317 363 SIEAVKMAKR-A-GWGVMASHRSGETEDTFIADLSVGLATGQIKTGA 407 (445)
Q Consensus 363 a~~i~~~A~~-~-g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~ 407 (445)
+.++++..++ + ++.++.+.- . |... +.+|. -.++..++.|.
T Consensus 127 ~~e~I~~ir~~~p~~~vi~g~V-~-t~e~-a~~l~-~aGad~i~vg~ 169 (326)
T PRK05458 127 VINMIQHIKKHLPETFVIAGNV-G-TPEA-VRELE-NAGADATKVGI 169 (326)
T ss_pred HHHHHHHHHhhCCCCeEEEEec-C-CHHH-HHHHH-HcCcCEEEECC
Confidence 7776665554 4 377776531 1 2222 23332 34677777664
No 298
>PLN02656 tyrosine transaminase
Probab=20.12 E-value=4.7e+02 Score=26.61 Aligned_cols=99 Identities=15% Similarity=0.093 Sum_probs=54.6
Q ss_pred HHHHHHHHHh-hhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccC-cccc
Q 013317 282 DGLKNVYRSF-ISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN-QIGS 359 (445)
Q Consensus 282 ~~~i~~~~~~-~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~-k~GG 359 (445)
.+++..+... +++-+-..+++|..+. +....++....-..+|+.-++.+.-+++++++.+..+..-++...++ -.|.
T Consensus 106 ~~al~~~~~~l~~~gd~Vlv~~p~y~~-~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~ 184 (409)
T PLN02656 106 TQAIDVALSMLARPGANILLPRPGFPI-YELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCGN 184 (409)
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCCCc-HHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCCCCC
Confidence 3455443333 3445577899998642 22222222111101232112222235788887776655555555554 3454
Q ss_pred H---HHHHHHHHHHHHcCCcEEecC
Q 013317 360 V---TESIEAVKMAKRAGWGVMASH 381 (445)
Q Consensus 360 i---t~a~~i~~~A~~~g~~~~~~~ 381 (445)
+ .+..+++++|+++++.+++..
T Consensus 185 ~~s~~~~~~i~~~a~~~~~~ii~De 209 (409)
T PLN02656 185 VYSYQHLKKIAETAEKLKILVIADE 209 (409)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEeh
Confidence 4 488999999999998875443
No 299
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=20.06 E-value=6.2e+02 Score=23.28 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=44.7
Q ss_pred cCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHH
Q 013317 294 DHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAV 367 (445)
Q Consensus 294 ~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~ 367 (445)
+.-+.-+|.|..+ -.+++-...+..+.++-+.-|. +++..+++.++.+ +.++.+|+-+..++-+.+.++
T Consensus 52 DvVildie~p~rd-~~e~~~~~~~~~~~piv~lt~~---s~p~~i~~a~~~G-v~ayivkpi~~~rl~p~L~vA 120 (194)
T COG3707 52 DVVILDIEMPRRD-IIEALLLASENVARPIVALTAY---SDPALIEAAIEAG-VMAYIVKPLDESRLLPILDVA 120 (194)
T ss_pred CEEEEecCCCCcc-HHHHHHHhhcCCCCCEEEEEcc---CChHHHHHHHHcC-CeEEEecCcchhhhhHHHHHH
Confidence 4446678999986 4566666666555334334443 3588888887766 567777877777776665554
No 300
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=20.05 E-value=6.4e+02 Score=25.55 Aligned_cols=96 Identities=13% Similarity=0.143 Sum_probs=60.1
Q ss_pred HHHHHHHH-HhhhcCCeeEEECCCCccCHHHHHHHHHHhCCceEEEeccccccCHHHHHHHHhcCCCCEEEec-c-Cccc
Q 013317 282 DGLKNVYR-SFISDHPIVSIEDPFDQDDWEHYAELTGKIGRHVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK-V-NQIG 358 (445)
Q Consensus 282 ~~~i~~~~-~~~~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~~pI~gde~~~~~~~~~~~~i~~~a~d~v~ik-~-~k~G 358 (445)
.+++..+. .++.+-+-..+.+|....-+.-+..+..... +.+...+. .+++++++.++.+ .++|.+. + +-.|
T Consensus 76 ~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~--~~v~~~d~--~d~~~l~~ai~~~-tklV~l~~p~NPtG 150 (382)
T TIGR02080 76 MSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGC--FRVLFVDQ--GDEQALRAALAQK-PKLVLIETPSNPLL 150 (382)
T ss_pred HHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcC--eEEEEECC--CCHHHHHHhcCcC-ceEEEEECCCCCCC
Confidence 34544333 3445445566778876655555666655444 44422222 3578888887654 5666553 2 3457
Q ss_pred cHHHHHHHHHHHHHcCCcEEecCC
Q 013317 359 SVTESIEAVKMAKRAGWGVMASHR 382 (445)
Q Consensus 359 Git~a~~i~~~A~~~g~~~~~~~~ 382 (445)
.+.+..+++++|+++|+.+++...
T Consensus 151 ~~~dl~~I~~la~~~g~~vvvD~a 174 (382)
T TIGR02080 151 RVVDIAKICHLAKAVGAVVVVDNT 174 (382)
T ss_pred EecCHHHHHHHHHHcCCEEEEECC
Confidence 888899999999999998877664
No 301
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=20.02 E-value=1.4e+02 Score=28.68 Aligned_cols=96 Identities=14% Similarity=0.092 Sum_probs=59.5
Q ss_pred cccccCHHHHHHHHhcCCCCEEEeccCccccHHHHHHHHHHHHHc-CCcE--EecCCCCCC-----hhHH---HHHHHhh
Q 013317 329 DLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVKMAKRA-GWGV--MASHRSGET-----EDTF---IADLSVG 397 (445)
Q Consensus 329 e~~~~~~~~~~~~i~~~a~d~v~ik~~k~GGit~a~~i~~~A~~~-g~~~--~~~~~~~et-----~~~~---~~~la~a 397 (445)
|.++.+.+++..+.+.+|-.+=..+-.-.||+|+....++.+.++ ++++ |+=.+.++. +... -..++..
T Consensus 5 Evcv~s~~~a~~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~ 84 (248)
T PRK11572 5 EICCYSMECALTAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRE 84 (248)
T ss_pred EEEECCHHHHHHHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 344556788888888877777666666789999999999988875 5654 555544432 2221 2244455
Q ss_pred hcCCccccCCCCCch--hHHHHHHHHHHH
Q 013317 398 LATGQIKTGAPCRSE--RLAKYNQLLRIE 424 (445)
Q Consensus 398 ~~~~~~~~G~~~~~e--r~~k~n~ll~i~ 424 (445)
.++.-+.+|.+...- -.....+|++..
T Consensus 85 ~GadGvV~G~L~~dg~vD~~~~~~Li~~a 113 (248)
T PRK11572 85 LGFPGLVTGVLDVDGHVDMPRMRKIMAAA 113 (248)
T ss_pred cCCCEEEEeeECCCCCcCHHHHHHHHHHh
Confidence 577777787765222 122334455554
Done!