Query 013318
Match_columns 445
No_of_seqs 158 out of 1673
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 08:20:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 8.4E-29 2.9E-33 249.0 35.2 380 27-435 27-436 (451)
2 3o7q_A L-fucose-proton symport 100.0 1.7E-28 5.7E-33 246.0 29.6 372 23-422 21-422 (438)
3 4aps_A DI-OR tripeptide H+ sym 99.9 8.1E-24 2.8E-28 215.4 31.2 389 25-436 10-475 (491)
4 4gc0_A D-xylose-proton symport 99.9 3.2E-24 1.1E-28 218.3 27.3 348 66-431 62-461 (491)
5 2gfp_A EMRD, multidrug resista 99.9 1.6E-24 5.5E-29 212.9 17.6 338 32-409 4-349 (375)
6 2cfq_A Lactose permease; trans 99.9 4.5E-22 1.5E-26 198.8 13.5 372 27-431 6-398 (417)
7 2xut_A Proton/peptide symporte 99.9 7.7E-20 2.6E-24 187.6 24.6 384 26-435 10-505 (524)
8 3o7q_A L-fucose-proton symport 99.1 7E-10 2.4E-14 110.3 14.3 142 262-409 33-176 (438)
9 4aps_A DI-OR tripeptide H+ sym 99.1 3.6E-09 1.2E-13 107.0 17.5 141 286-434 50-198 (491)
10 2gfp_A EMRD, multidrug resista 99.0 2E-09 6.8E-14 104.9 10.7 153 267-427 12-169 (375)
11 1pw4_A Glycerol-3-phosphate tr 99.0 1.2E-08 4.1E-13 101.6 16.6 171 28-220 252-434 (451)
12 2xut_A Proton/peptide symporte 98.9 1.6E-08 5.5E-13 103.1 14.6 137 287-430 51-196 (524)
13 2cfq_A Lactose permease; trans 98.7 1.8E-07 6.1E-12 92.7 13.9 125 71-217 271-397 (417)
14 4gc0_A D-xylose-proton symport 98.4 2.5E-06 8.5E-11 85.9 14.2 138 70-224 323-468 (491)
15 2g9p_A Antimicrobial peptide l 41.7 15 0.00051 19.2 1.6 13 79-91 3-15 (26)
16 2jwa_A Receptor tyrosine-prote 28.1 69 0.0024 20.0 3.4 14 423-436 26-39 (44)
17 2rdd_B UPF0092 membrane protei 24.6 50 0.0017 19.6 2.3 13 427-439 15-27 (37)
18 2l2t_A Receptor tyrosine-prote 23.6 32 0.0011 21.5 1.3 10 425-434 27-36 (44)
19 2ks1_B Epidermal growth factor 23.4 35 0.0012 21.3 1.4 12 424-435 27-38 (44)
20 3arc_T Photosystem II reaction 23.2 1.1E+02 0.0039 17.5 3.8 19 208-226 11-30 (32)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97 E-value=8.4e-29 Score=249.01 Aligned_cols=380 Identities=10% Similarity=-0.013 Sum_probs=251.6
Q ss_pred cchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchH----HHHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHH
Q 013318 27 TRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTI----SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF 102 (445)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~----~~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~ 102 (445)
++.++.+.++.++............|.+.++. .+.. ..+.......+++++.|++.||+|||++++++.++.++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 105 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV 105 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHH
Confidence 34444555555555555444555666665555 4432 244555567788999999999999999999999988776
Q ss_pred HHHh-h----hcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHH
Q 013318 103 VAAN-L----FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT 177 (445)
Q Consensus 103 ~~~~-~----~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~ 177 (445)
.+.. + .+++..+++.|+++|+|.+..+++..++++++. ++++|++++|+......+|.++|++++
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 106 MLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW----------SQKERGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp HHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTC----------TTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHC----------CchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6654 5 789999999999999999999999999999997 468999999999999999999999998
Q ss_pred HHhhcCccccccccCCCCC-cchhHHHHHHHHHHHHHHH-HHhccCCcccCcc---cccccc----hhhhhHHHHHHHH-
Q 013318 178 LAVLKDDKVCAALLGGSTS-GTTLLFIVFLGVITLGTIL-MCFLRKEEDKGEK---ETADAS----VNFYSYLVSLSKS- 247 (445)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~-w~~~~~~i~~~l~~~~~~l-~~~l~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~- 247 (445)
..+... .+ ||. .|.+.+++.++..++ .+++||+++.+++ +..+++ ..++.+.+...++
T Consensus 176 ~~l~~~-----------~g~w~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (451)
T 1pw4_A 176 LLGMAW-----------FNDWHA-ALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQI 243 (451)
T ss_dssp HHHHHH-----------TCCSTT-CTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHH
T ss_pred HHHHHH-----------hccHHH-HHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccc
Confidence 765532 24 764 344555555444433 3567764332111 100000 0000000000111
Q ss_pred -HHHhhccchhHHHHHHHHHHHHHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCC--CCccch
Q 013318 248 -ITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGL--PSITFI 323 (445)
Q Consensus 248 -~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~--g~~~~~ 323 (445)
..+.+|+|+++......+..+........+++.++.+ .+.+..+.+.+.+..+++.++++++.|++.||+ ++|+.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 323 (451)
T 1pw4_A 244 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 323 (451)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred hHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH
Confidence 2456788888766655444443332233444444433 345556788999999999999999999999999 887644
Q ss_pred HhHHHHHHH-HHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHH-HHH
Q 013318 324 VSGGAIAQV-VVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCA-SIA 400 (445)
Q Consensus 324 i~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~-g~~ 400 (445)
..+.++.. ++++ .+.+.++.+ .....+..++.|++.+...+..+++..+.+|++ ++.++|+++....+ |..
T Consensus 324 -~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~ 397 (451)
T 1pw4_A 324 -GVFFMTLVTIATI--VYWMNPAGN---PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV 397 (451)
T ss_dssp -HHHHHHHHHHHHH--HTTSCCTTC---HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH--HHHHhcccC---HHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHH
Confidence 34444433 4432 223333222 244556677788888888888889999999987 55688999998888 888
Q ss_pred HHHHhhcc----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013318 401 VVFFIGPY----ISLQAMLIVMVVGICVALVGILFLTIQ 435 (445)
Q Consensus 401 ig~~i~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~ 435 (445)
++..+.+. .++...+++.+++.+++.+..++..++
T Consensus 398 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 398 AASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77666543 356777777777777777766665433
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=1.7e-28 Score=246.03 Aligned_cols=372 Identities=10% Similarity=0.052 Sum_probs=236.6
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhHhhhhhhccCCCCchHHHH----HHHHHHHHhhhhHHHHHHHhCcchhhhhhhHH
Q 013318 23 PKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLG----ILYTSFTCFSLVASLVVRVLGSKNALILGTTG 98 (445)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~----~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~ 98 (445)
.++.++.++.+.+++++....+.....+.|.+.++.+++....+ .......+++++.|++.||+|||++++++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 33455556666666666665555566667777766777665544 34445567888999999999999999999998
Q ss_pred HHHHHHHh----hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhh
Q 013318 99 YWLFVAAN----LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN 174 (445)
Q Consensus 99 ~~~~~~~~----~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~ 174 (445)
+++..+.. ..++++.+++.|++.|+|.+..+++..++++++. |+++|++++|+......+|..+|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~ 170 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG----------PESSGHFRLNLAQTFNSFGAIIAV 170 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------CSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHc----------CchhHHHHHHHHHHHHHHHHHHHH
Confidence 87766543 4689999999999999999999999999999997 578999999999999999999999
Q ss_pred HHHHHhh-cCccccc--------c--cc----CCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhh
Q 013318 175 LITLAVL-KDDKVCA--------A--LL----GGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYS 239 (445)
Q Consensus 175 li~~~l~-~~~~~~~--------~--~~----~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 239 (445)
+++..+. .....-+ . .. ....+||. .|.+.+++..+..++.++.+.|+++++++.++++ .
T Consensus 171 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----~ 245 (438)
T 3o7q_A 171 VFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQT-PYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQ----G 245 (438)
T ss_dssp HHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSST----T
T ss_pred HHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHcCCcccccccccccc----c
Confidence 9988776 3321000 0 00 00001543 3444444433333333444444332221111111 1
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhhccc-cccc-ccccchhHHHHHHHHHHHHHHHhhhhccccCC
Q 013318 240 YLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKE-IVTP-ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGL 317 (445)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~g~~~~f~~~~~~~~-~~~~-~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~ 317 (445)
+.+ +...+.+|+|+++......+...........+.+.+ ..+. +.+....+......+++.++++++.|++.||+
T Consensus 246 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~ 322 (438)
T 3o7q_A 246 SFS---ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF 322 (438)
T ss_dssp SHH---HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chh---hhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 234467888888766554433332222222344444 3222 55566788888999999999999999999999
Q ss_pred CCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHH
Q 013318 318 PSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCA 397 (445)
Q Consensus 318 g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~ 397 (445)
+||+. +..+.++..+++++ ..+.++ .......++.|++.+...+..+++..+.+|++++.+.+... ...+
T Consensus 323 ~~~~~-~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 392 (438)
T 3o7q_A 323 APHKV-LAAYALIAMALCLI--SAFAGG------HVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTII 392 (438)
T ss_dssp CHHHH-HHHHHHHHHHHHHH--HHHCCH------HHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTH
T ss_pred cchHH-HHHHHHHHHHHHHH--HHHcCC------cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHH
Confidence 98874 45555555554332 233322 12334457788888888888999988999877555555444 4446
Q ss_pred HHHHHHHhhcc----hh-HHHHHHHHHHHH
Q 013318 398 SIAVVFFIGPY----IS-LQAMLIVMVVGI 422 (445)
Q Consensus 398 g~~ig~~i~~~----~~-~~~~~~i~~~~~ 422 (445)
|..+++.+.+. .+ +...+++.+++.
T Consensus 393 g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 422 (438)
T 3o7q_A 393 GGGIVTPVMGFVSDAAGNIPTAELIPALCF 422 (438)
T ss_dssp HHHHHHHHHHHHHHHHTSSGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 66665554433 23 555555544433
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.93 E-value=8.1e-24 Score=215.44 Aligned_cols=389 Identities=12% Similarity=0.001 Sum_probs=225.7
Q ss_pred cccchhHHHHHHHHHHHHHHhhhHh-hhhhhcc-----CCCCchHHH----HHHHHHHHHhhhhHHHHHHH-hCcchhhh
Q 013318 25 NYTRDVHILSCAFLLIFLAYGAAQN-LETTVNT-----EGNLGTISL----GILYTSFTCFSLVASLVVRV-LGSKNALI 93 (445)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~i~~-----~~~~g~~~~----~~~~~~~ai~~l~~g~l~dr-~G~k~~l~ 93 (445)
+.++.++.+.+..++...++..... +.+.+.+ +.+.+.... +.......+++++.|+++|| +|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~ 89 (491)
T 4aps_A 10 GQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF 89 (491)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 4455666666666666555554433 2222322 256665443 44445667788999999999 89999999
Q ss_pred hhhHHHHHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccch--hhhhhhHHHHHHHHhh
Q 013318 94 LGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTV--IGSFNGEFWGMFASHQ 170 (445)
Q Consensus 94 ~g~~~~~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~--rg~~~g~~~~~~~lg~ 170 (445)
++.++..+..+.. ..+++..+++.|+++|+|.+..++...++++|+.+ +++ |+++++++....++|.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~----------~~~~~r~~~~~~~~~~~~~g~ 159 (491)
T 4aps_A 90 WGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYD----------EHDRRRDAGFSIFVFGINLGA 159 (491)
T ss_dssp HHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------SCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcC----------cccccceeeehHHHHHHHHHH
Confidence 9998887766654 67899999999999999999999999999999984 455 8888998999999999
Q ss_pred hhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhc-cCCcccC-cccccccchhhhhHHHHH----
Q 013318 171 FVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFL-RKEEDKG-EKETADASVNFYSYLVSL---- 244 (445)
Q Consensus 171 ~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l-~~~~~~~-~~~~~~~~~~~~~~~~~~---- 244 (445)
.+|++++..+... .+||. .|.+.++..+++.++.++. ++..+++ +++.++.+..+..+..+.
T Consensus 160 ~~~~~~~~~l~~~-----------~g~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 227 (491)
T 4aps_A 160 FIAPLIVGAAQEA-----------AGYHV-AFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLA 227 (491)
T ss_dssp HHHHHHHHHHHHH-----------SCHHH-HHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhh-----------hhHHH-HHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHH
Confidence 9999998877543 25754 4444444444444443333 2211111 000000000000000000
Q ss_pred -----------------------------------------HHHHHHhhccc-h---hHHHHHHHHHHHHHHHHHHhhhc
Q 013318 245 -----------------------------------------SKSITTLLADV-R---MLLIIPLFAYSGLQQAFVWAEFT 279 (445)
Q Consensus 245 -----------------------------------------~~~~~~~l~~~-~---~~~l~~~~~~~g~~~~f~~~~~~ 279 (445)
.++.....+++ + .+.+....+............++
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (491)
T 4aps_A 228 VAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLA 307 (491)
T ss_dssp CHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHH
T ss_pred HHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 00000000111 1 11111111111111111111222
Q ss_pred ccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchH----hHHHHHHHHHHHHHHh-h--ccCCCCccch
Q 013318 280 KEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIV----SGGAIAQVVVFLWILI-N--YSVTSGVLGT 351 (445)
Q Consensus 280 ~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i----~~g~~~~~~~~~~~~~-~--~~~~~~~~~~ 351 (445)
.+..+ .+.+....+......+++.+++.++.|++.||++||+... ..+.++..+++.+... . ..++.+ ...
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 386 (491)
T 4aps_A 308 TFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGK-VSP 386 (491)
T ss_dssp HHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTT-CCT
T ss_pred HHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-ccH
Confidence 12111 1223345666777888888999999999999999875321 1444444444321111 0 000100 012
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcch---hHHHHHHHHHHHHHHHHH
Q 013318 352 LYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI---SLQAMLIVMVVGICVALV 427 (445)
Q Consensus 352 ~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~~---~~~~~~~i~~~~~~~~~~ 427 (445)
....+..++.|++.+...+..+++..+.+|++ ++.+.|+++....+|..++..+.+.. ++...+.+++++++++.+
T Consensus 387 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (491)
T 4aps_A 387 LWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGI 466 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 44566778889999888888899999999987 55678999999999999988777654 455666666666666665
Q ss_pred HHHHHHHHH
Q 013318 428 GILFLTIQV 436 (445)
Q Consensus 428 ~~~~~~~~~ 436 (445)
..+...++.
T Consensus 467 ~~~~~~~~~ 475 (491)
T 4aps_A 467 VLVFLSKRI 475 (491)
T ss_dssp HHHHC----
T ss_pred HHHHHHHHH
Confidence 555444333
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.93 E-value=3.2e-24 Score=218.33 Aligned_cols=348 Identities=9% Similarity=-0.000 Sum_probs=197.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-------------------hhcchhhHHhHHHHhhhhhH
Q 013318 66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-------------------LFPSWYTMVPASLYLGFAAS 126 (445)
Q Consensus 66 ~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-------------------~~~~~~~li~~r~l~Gig~g 126 (445)
+..+....+++++.|+++||+|||+++.++.+++.+..+.+ .++++..+++.|+++|+|.|
T Consensus 62 s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G 141 (491)
T 4gc0_A 62 ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVG 141 (491)
T ss_dssp HTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 44556677899999999999999999999999888776643 36789999999999999999
Q ss_pred HhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHH
Q 013318 127 IIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFL 206 (445)
Q Consensus 127 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~ 206 (445)
...+....|++|++ |+++||+..++.+.....|..+++.++......... ...+..+|| ..+.+..
T Consensus 142 ~~~~~~~~~i~E~~----------p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~ 207 (491)
T 4gc0_A 142 LASMLSPMYIAELA----------PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDA---SWLNTDGWR-YMFASEC 207 (491)
T ss_dssp HHHHHHHHHHHTTS----------CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT---TTTTTTHHH-HHHHTTH
T ss_pred HHHHHHHHHHHhhC----------CHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccccc---ccccchhhH-HHhhhhh
Confidence 99999999999998 578999999999998888888888877665443221 000112333 2333222
Q ss_pred HHHHHHHHHHHhccCCccc----Cccccccc----ch------hhhhHHHHHHH------HHHHhhccchhHHHHHHHHH
Q 013318 207 GVITLGTILMCFLRKEEDK----GEKETADA----SV------NFYSYLVSLSK------SITTLLADVRMLLIIPLFAY 266 (445)
Q Consensus 207 ~l~~~~~~l~~~l~~~~~~----~~~~~~~~----~~------~~~~~~~~~~~------~~~~~l~~~~~~~l~~~~~~ 266 (445)
+..++..+..+++||+++. .++|+.++ .. .+....++... ......+.++........++
T Consensus 208 ~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (491)
T 4gc0_A 208 IPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIF 287 (491)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHH
T ss_pred hhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHH
Confidence 2222333333556765431 11110000 00 00000000000 01112223333322222222
Q ss_pred HHHHHHHHHhhhccccc-ccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCC
Q 013318 267 SGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVT 345 (445)
Q Consensus 267 ~g~~~~f~~~~~~~~~~-~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~ 345 (445)
..+........+.+.+. ..+.............++...++.++.+++.||+|||+.. ..+.....+++..........
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~-~~~~~~~~~~~~~l~~~~~~~ 366 (491)
T 4gc0_A 288 QQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ-IIGALGMAIGMFSLGTAFYTQ 366 (491)
T ss_dssp HHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh-ccchHHHHHHHHHHHHHHhcc
Confidence 22211111122222221 1222223344556677888899999999999999998754 455544444332111111111
Q ss_pred CCccchhHHHHHHHHHhhh-hhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhhcch----------hHHH
Q 013318 346 SGVLGTLYPLIMAALLGIG-DGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYI----------SLQA 413 (445)
Q Consensus 346 ~~~~~~~~~~~~~~l~G~~-~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~~~~----------~~~~ 413 (445)
.. .....+...++..+ ...+.+..+.+.+|++|.+. +++.|+.+..+.++..++..+.|.+ ....
T Consensus 367 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~ 443 (491)
T 4gc0_A 367 AP---GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGF 443 (491)
T ss_dssp CC---HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCH
T ss_pred cc---hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 11 12222222222222 23345677889999999885 4578888777777777665454432 2234
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013318 414 MLIVMVVGICVALVGILF 431 (445)
Q Consensus 414 ~~~i~~~~~~~~~~~~~~ 431 (445)
.+++++++++++.+..++
T Consensus 444 ~~~i~~~~~~~~~i~~~~ 461 (491)
T 4gc0_A 444 SYWIYGCMGVLAALFMWK 461 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 566777777776665433
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.92 E-value=1.6e-24 Score=212.86 Aligned_cols=338 Identities=13% Similarity=0.021 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHHHhhhHhhhhhhccCCCCchHHH----HHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-
Q 013318 32 ILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISL----GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN- 106 (445)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~----~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~- 106 (445)
.+.+..++............|.+.++.+.+.... +.......+++++.|++.||+|||+++.++..+..+.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 3344444444444445556666666666665443 44444667788999999999999999999998887766654
Q ss_pred hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccc
Q 013318 107 LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKV 186 (445)
Q Consensus 107 ~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~ 186 (445)
..+++..+++.|+++|++.+..++...+++.|+.+ +++|++++++......+|..+|+.++..+..+
T Consensus 84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--- 150 (375)
T 2gfp_A 84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYE----------RTQLRHANSLLNMGILVSPLLAPLIGGLLDTM--- 150 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------TSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH---
T ss_pred HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCC----------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---
Confidence 67899999999999999999999999999999984 67899999999999999999999998876532
Q ss_pred cccccCCCCCcchhHHHHHHHHHHHHHH-HHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccchhHHHHHHHH
Q 013318 187 CAALLGGSTSGTTLLFIVFLGVITLGTI-LMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFA 265 (445)
Q Consensus 187 ~~~~~~~~~~w~~~~~~i~~~l~~~~~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 265 (445)
.+||. .|.+.+++.++..+ ..+++||+++.++++ + + ...+ ..+.+|+|+++......+
T Consensus 151 --------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~--~~~~-------~~~~~~~~~~~~~~~~~~ 209 (375)
T 2gfp_A 151 --------WNWRA-CYLFLLVLCAGVTFSMARWMPETRPVDAPR--T-R--LLTS-------YKTLFGNSGFNCYLLMLI 209 (375)
T ss_dssp --------HHHHH-HHHHHHHHHHHHHCCCCCSSCCCSTTTCCC--C-C--TTTC-------STHHHHHHHHHHHHHHHH
T ss_pred --------ccHHH-HHHHHHHHHHHHHHHHHHHCcccCCCCccc--c-c--HHHH-------HHHHhcCcchHHHHHHHH
Confidence 24653 34444444333333 223455543222111 0 0 0111 123456777766554444
Q ss_pred HHHHHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHH-HHHHHHHHHhhcc
Q 013318 266 YSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIA-QVVVFLWILINYS 343 (445)
Q Consensus 266 ~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~-~~~~~~~~~~~~~ 343 (445)
..+..........+.++.+ .+.+..+.+......+++.++++++.|++.||.+++ . ..+..+ ...+.........
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~-~~~~~~~~~~~~~~~~~~~~ 286 (375)
T 2gfp_A 210 GGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--M-WQSVICCLLAGLLMWIPDWF 286 (375)
T ss_dssp HHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--H-HHHHHHHHHTSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHhhh
Confidence 4333332333445544432 345556788888999999999999999999998752 2 233322 1111110011111
Q ss_pred CCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCchhhHHHHHHHHHHHHHHHHHhhcch
Q 013318 344 VTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYI 409 (445)
Q Consensus 344 ~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~g~~ig~~i~~~~ 409 (445)
+..+ .....+..++.|++.+...+..+++..+.+|++++++.|+++..+.+|..++..+.+..
T Consensus 287 ~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l 349 (375)
T 2gfp_A 287 GVMN---VWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAML 349 (375)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred cccc---HHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 23345667788999999899999999999996666788999999888888776555443
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.87 E-value=4.5e-22 Score=198.80 Aligned_cols=372 Identities=12% Similarity=0.067 Sum_probs=204.2
Q ss_pred cchhHHHHHHHHHHHHHHhhhHhhhhh-hccCCCCch----HHHHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHH
Q 013318 27 TRDVHILSCAFLLIFLAYGAAQNLETT-VNTEGNLGT----ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL 101 (445)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~~~~~~~~~-i~~~~~~g~----~~~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~ 101 (445)
+|+.+.+....++.+..+.....+.|. +.++.+++. ...+.......+++++.|+++||+|||++++++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLV 85 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 345566666656655555444444433 333334433 234555567778999999999999999999988876543
Q ss_pred HHHH----hhhcch-hhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHH
Q 013318 102 FVAA----NLFPSW-YTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI 176 (445)
Q Consensus 102 ~~~~----~~~~~~-~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li 176 (445)
.... ...+.. ..++..+.+.|++.+..+++....+.++.++. ++++++.+|.......+|..+|+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~g~~~~~~l 157 (417)
T 2cfq_A 86 MFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV--------SRRSNFEFGRARMFGCVGWALGASI 157 (417)
T ss_dssp CHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH--------HHHHTCCHHHHSSSTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--------hhhcccchHHHHHHHHHHHHHHHHH
Confidence 2111 111211 12334566777766666655555555554321 2356777777666667888888888
Q ss_pred HHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCc-ccCcccccccchhhhhHHHHHHHHHHHhhccc
Q 013318 177 TLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE-DKGEKETADASVNFYSYLVSLSKSITTLLADV 255 (445)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 255 (445)
+..+... +|+. .|++.++..++..++.++.++++ +.+++++.+++..++.+ .++..+.+|+|
T Consensus 158 ~~~l~~~------------~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 220 (417)
T 2cfq_A 158 VGIMFTI------------NNQF-VFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFS----LKLALELFRQP 220 (417)
T ss_dssp HHHHHHH------------CSHH-HHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCC----HHHHHHHTTCH
T ss_pred HHHHHHh------------chhH-HHHHHHHHHHHHHHHHHHcCccccccccccccccccccccc----HHHHHHHhcCC
Confidence 7766421 3543 33332222222222222333221 11110100000001111 12334577888
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhccccc----ccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHH
Q 013318 256 RMLLIIPLFAYSGLQQAFVWAEFTKEIV----TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQ 331 (445)
Q Consensus 256 ~~~~l~~~~~~~g~~~~f~~~~~~~~~~----~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~ 331 (445)
+++......+...........+++.++. ..+.+.+..++......++.+++.++.|+++||++||+. +..+.++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-l~~~~~~~ 299 (417)
T 2cfq_A 221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA-LLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHH
Confidence 8765543322211111111122332221 111223456777778888899999999999999998874 44555555
Q ss_pred HHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHH-HHHHHHHHHHHHHHhhcch
Q 013318 332 VVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQ-LKVWQCASIAVVFFIGPYI 409 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~-~~~~~~~g~~ig~~i~~~~ 409 (445)
.+.++ ...+.++ ...+.+...+.+++.+...+..+++.+|.+|++. +++++. ++..+.+|..+++.+.+.+
T Consensus 300 ~~~~~--~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l 372 (417)
T 2cfq_A 300 SVRII--GSSFATS-----ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372 (417)
T ss_dssp HHHHH--HHTTCCS-----HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTH
T ss_pred HHHHH--HHHHhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHH
Confidence 54432 2233322 1334445555666666666667889999999774 456776 5777778877776665542
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHH
Q 013318 410 ----SLQAMLIVMVVGICVALVGILF 431 (445)
Q Consensus 410 ----~~~~~~~i~~~~~~~~~~~~~~ 431 (445)
++...+.+.+++.+++.+..+.
T Consensus 373 ~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 373 YESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 4555667777776777665543
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.85 E-value=7.7e-20 Score=187.61 Aligned_cols=384 Identities=10% Similarity=0.032 Sum_probs=205.1
Q ss_pred ccchhHHHHHHHHHHHHHHhhhHhhh-hhhccCCC------CchH----HHHHHHHHHHHhhhhHHHHHHHh-Ccchhhh
Q 013318 26 YTRDVHILSCAFLLIFLAYGAAQNLE-TTVNTEGN------LGTI----SLGILYTSFTCFSLVASLVVRVL-GSKNALI 93 (445)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~~~~~~~-~~i~~~~~------~g~~----~~~~~~~~~ai~~l~~g~l~dr~-G~k~~l~ 93 (445)
.+++++.+.+..++...++....... +.+.++.+ .+.. ..+.......+++++.|++.||+ |||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34455555555555555554433322 23333333 4432 24445556677889999999999 9999999
Q ss_pred hhhHHHHHHHHHh-hhc-chhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhH---HHHHHHH
Q 013318 94 LGTTGYWLFVAAN-LFP-SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGE---FWGMFAS 168 (445)
Q Consensus 94 ~g~~~~~~~~~~~-~~~-~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~---~~~~~~l 168 (445)
++.++..+..+.. ..+ ++..+++.|++.|+|.+...+...++++++. |+++|++..+. +....++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~~~~ 159 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQF----------DQSNKSLAQKAFDMFYFTINF 159 (524)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTC----------STTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHc----------CccchHHHHHHHHHHHHHHHH
Confidence 9998877766554 566 8888999999999999999999999999997 46678766555 8888899
Q ss_pred hhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcc--cCcccc-cc---------cchh
Q 013318 169 HQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED--KGEKET-AD---------ASVN 236 (445)
Q Consensus 169 g~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~--~~~~~~-~~---------~~~~ 236 (445)
|..+|++++..+... .+|+. .|.+.+++.+++.++.++.+++.+ +++++. .+ ++..
T Consensus 160 g~~~g~~~~~~l~~~-----------~g~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (524)
T 2xut_A 160 GSFFASLSMPLLLKN-----------FGAAV-AFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKV 227 (524)
T ss_dssp HHHHHHHTSTHHHHT-----------SCHHH-HHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------C
T ss_pred HHHHHHHHHHHHhcc-----------ccHHH-HHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhh
Confidence 999999888766532 25653 455555444444443333322111 111000 00 0000
Q ss_pred hhhHHHHHHHH-------------------------------------HH---H---------hhccc-hhHHHHHHHHH
Q 013318 237 FYSYLVSLSKS-------------------------------------IT---T---------LLADV-RMLLIIPLFAY 266 (445)
Q Consensus 237 ~~~~~~~~~~~-------------------------------------~~---~---------~l~~~-~~~~l~~~~~~ 266 (445)
...+....... .+ + ..+++ +.+...+.+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (524)
T 2xut_A 228 EGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFAL 307 (524)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTT
T ss_pred cccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHH
Confidence 00000000000 00 0 01122 22222221111
Q ss_pred HHHHHHHH---Hhhhccccccccccc---chhHHHHHHHHHHHHHHHhhhhccc----cCCCCc---cchHhHHHHHHHH
Q 013318 267 SGLQQAFV---WAEFTKEIVTPALGV---SGVGGAMAVYGAFDAICSLAAGRLT----TGLPSI---TFIVSGGAIAQVV 333 (445)
Q Consensus 267 ~g~~~~f~---~~~~~~~~~~~~~~~---~~~g~~~~~~~i~~~~g~~~~G~l~----d~~g~~---~~~i~~g~~~~~~ 333 (445)
........ .+.++.+. .+.+. ...+.+.....++.+++..+.+++. ||.++| ...+..+.++..+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 385 (524)
T 2xut_A 308 VTPFWSLFDQKASTWILQA--NDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGL 385 (524)
T ss_dssp SHHHHTTTSSTTTHHHHHH--HHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHH
T ss_pred HHHHHHHHhccchhhHHhH--HhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 11100000 01111111 11122 1345555566667777777777764 444332 1233455555555
Q ss_pred HHHHHHhhccCC----CCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcc
Q 013318 334 VFLWILINYSVT----SGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY 408 (445)
Q Consensus 334 ~~~~~~~~~~~~----~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~ 408 (445)
+++ .+.+.+. ..........+..+++|++.+...+..+++..+..|++ ++.+.|+++..+.+|..++..+.+.
T Consensus 386 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~ 463 (524)
T 2xut_A 386 SWI--VVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVS 463 (524)
T ss_dssp HHH--TTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 2222210 00001234556778889999999999999999999876 5568899999888888887766543
Q ss_pred hhH---------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 013318 409 ISL---------------QAMLIVMVVGICVALVGILFLTIQ 435 (445)
Q Consensus 409 ~~~---------------~~~~~i~~~~~~~~~~~~~~~~~~ 435 (445)
..- ...+.+.+++++++.+.+++..++
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (524)
T 2xut_A 464 VKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARS 505 (524)
T ss_dssp TTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred hcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 210 122556666666666665544433
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.10 E-value=7e-10 Score=110.28 Aligned_cols=142 Identities=12% Similarity=0.035 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHH-h
Q 013318 262 PLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL-I 340 (445)
Q Consensus 262 ~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~-~ 340 (445)
..++..++.........+....+-+++..++|++.+.+.++.++++++.|+++||+|||+. +..+.++..++.++.. .
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~-l~~~~~~~~~~~~~~~~~ 111 (438)
T 3o7q_A 33 SLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG-IITGLFLYALGAALFWPA 111 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHH-HHHHHHHHHHHHHHHHhc
Confidence 3344445443333233333222335566789999999999999999999999999999874 4566666555543211 0
Q ss_pred hccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCch-hhHHHHHHHHHHHHHHHHHhhcch
Q 013318 341 NYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTE-GAFAQLKVWQCASIAVVFFIGPYI 409 (445)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~~-~a~~~~~~~~~~g~~ig~~i~~~~ 409 (445)
...++ +..+++..++.|++.+...+..++++++.+|++++ .+.+.++....+|..+++.+.+.+
T Consensus 112 ~~~~~-----~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 112 AEIMN-----YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred ccccc-----HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23322 35677788899999999999999999999987755 468999999999998887776543
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.06 E-value=3.6e-09 Score=106.97 Aligned_cols=141 Identities=14% Similarity=0.200 Sum_probs=105.7
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhhccccC-CCCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhh
Q 013318 286 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTG-LPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIG 364 (445)
Q Consensus 286 ~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~-~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 364 (445)
+.+..+.+.+.+.+.++..+++++.|+++|| +|||+ ++..+.++..++.+ ...+.++ ...+++..++.|++
T Consensus 50 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~-~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~l~g~~ 121 (491)
T 4aps_A 50 HITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP-AVFWGGVLIMLGHI--VLALPFG-----ASALFGSIILIIIG 121 (491)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH-HHHHHHHHHHHHHH--HHHSCCS-----TTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHHHHHHHHH--HHHHhhh-----HHHHHHHHHHHHHH
Confidence 4455678999999999999999999999999 89987 45667666665543 2344433 24567778889999
Q ss_pred hhhhhhhhhHHHHhhccCCc--h-hhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013318 365 DGVLNTQLSALLGILFKHDT--E-GAFAQLKVWQCASIAVVFFIGPY----ISLQAMLIVMVVGICVALVGILFLTI 434 (445)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~~--~-~a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~ 434 (445)
.+...+...++++|.+|+++ + .+++.++...++|..+++.+.+. .++.+.+++.++..+++.+...+..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 122 TGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999998654 2 36788888888888887766644 46777788877777777666655543
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.96 E-value=2e-09 Score=104.88 Aligned_cols=153 Identities=15% Similarity=0.113 Sum_probs=106.9
Q ss_pred HHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccCCC
Q 013318 267 SGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTS 346 (445)
Q Consensus 267 ~g~~~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~~~ 346 (445)
.++....+...++....+.+.+.++.+.+.+.+.++..+++++.|+++||+|||+.+ ..+.++..++.+. ....++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~~~~~~--~~~~~~- 87 (375)
T 2gfp_A 12 GQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI-LVGMSIFMLATLV--AVTTSS- 87 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC-HHHHHHHHHHHHH--HHHHHH-
T ss_pred HHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH-HHHHHHHHHHHHH--HHHhcc-
Confidence 333333333444433233355566789999999999999999999999999998854 5666665554432 223322
Q ss_pred CccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCC-chhhHHHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHH
Q 013318 347 GVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI----SLQAMLIVMVVG 421 (445)
Q Consensus 347 ~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~~~~g~~ig~~i~~~~----~~~~~~~i~~~~ 421 (445)
...+++..++.|++.+...+...+++.|.+|++ ++.+++.++....+|..+++.+.+.+ ++.+.+.+.++.
T Consensus 88 ----~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 88 ----LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 245667788899999999999999999999865 55588999998888888887776543 455566666655
Q ss_pred HHHHHH
Q 013318 422 ICVALV 427 (445)
Q Consensus 422 ~~~~~~ 427 (445)
.++..+
T Consensus 164 ~~~~~~ 169 (375)
T 2gfp_A 164 CAGVTF 169 (375)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 555544
No 11
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.96 E-value=1.2e-08 Score=101.60 Aligned_cols=171 Identities=12% Similarity=-0.023 Sum_probs=116.7
Q ss_pred chhHHHHHHHHHHHHHHhhhHhhhhhhccC-CCCchHHHHHHHH----HHHHhhhhHHHHHHHh--CcchhhhhhhHHHH
Q 013318 28 RDVHILSCAFLLIFLAYGAAQNLETTVNTE-GNLGTISLGILYT----SFTCFSLVASLVVRVL--GSKNALILGTTGYW 100 (445)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~g~~~~~~~~~----~~ai~~l~~g~l~dr~--G~k~~l~~g~~~~~ 100 (445)
++++.+.+..++....+.......|.+..+ .+.+....+.... ...++.++.|++.||+ |+|+.+.++..+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 455666666666665655555556665544 5666554333333 4456778899999999 99999988876654
Q ss_pred -HHHHHh-hh--cchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHH-hhhhhhH
Q 013318 101 -LFVAAN-LF--PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS-HQFVGNL 175 (445)
Q Consensus 101 -~~~~~~-~~--~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~l-g~~iG~l 175 (445)
+..... .. .+...++..-++.|++.+..++....++.+.. |+++||+++|++.....+ |..+|+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~~~~~~~~~~g~~~~~~ 401 (451)
T 1pw4_A 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA----------PKKAAGTAAGFTGLFGYLGGSVAASA 401 (451)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS----------CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHh----------chhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 433333 23 35666667778889988888887778888876 567899999999999999 9999998
Q ss_pred HHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhcc
Q 013318 176 ITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLR 220 (445)
Q Consensus 176 i~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~ 220 (445)
+...+.... ++ ...|.+.+++.+++.++.++++
T Consensus 402 ~~g~l~~~~-----------g~-~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 402 IVGYTVDFF-----------GW-DGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHSS-----------CS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----------Cc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 887776442 33 3345555666656655544443
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.89 E-value=1.6e-08 Score=103.09 Aligned_cols=137 Identities=12% Similarity=0.018 Sum_probs=100.5
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhhccccCC-CCccchHhHHHHHHHHHHHHHHhhccCCCCccchhHHHHHHHHHhhhh
Q 013318 287 LGVSGVGGAMAVYGAFDAICSLAAGRLTTGL-PSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD 365 (445)
Q Consensus 287 ~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~-g~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 365 (445)
++..+.|.+.+.+.++..+++++.|+++||+ |||+. +..+.++..++.+ +..+.+. + ...+++..++.|++.
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~-~~~~~~~~~~~~~--~~~~~~~-~---~~~~~~~~~l~g~~~ 123 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT-ILWLSLIYCVGHA--FLAIFEH-S---VQGFYTGLFLIALGS 123 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH-HHHHHHHHHHHHH--HHHHTSS-C---HHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHH--HHHHhcc-c---HHHHHHHHHHHHHhc
Confidence 5666889999999999999999999999999 99874 4566666555543 2233331 1 245667788899999
Q ss_pred hhhhhhhhHHHHhhccCCch-h---hHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHHHHHH
Q 013318 366 GVLNTQLSALLGILFKHDTE-G---AFAQLKVWQCASIAVVFFIGPY----ISLQAMLIVMVVGICVALVGIL 430 (445)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~~~-~---a~~~~~~~~~~g~~ig~~i~~~----~~~~~~~~i~~~~~~~~~~~~~ 430 (445)
+...+..++++++.+|++++ . .++.++...++|..+++.+.+. .++.+.+.+.+++.+++.+..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 124 GGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987654 2 3555888888888888776653 3566677776666666555443
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.68 E-value=1.8e-07 Score=92.70 Aligned_cols=125 Identities=17% Similarity=0.086 Sum_probs=87.5
Q ss_pred HHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCC
Q 013318 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL 149 (445)
Q Consensus 71 ~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~ 149 (445)
...++.++.+++.||+|||+++..+..+..+..... ..++...+++..++.|++.+...+....+++|..
T Consensus 271 ~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------- 341 (417)
T 2cfq_A 271 LNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF--------- 341 (417)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
Confidence 445678899999999999999988877665544332 4456666666777788887766666677888776
Q ss_pred CccchhhhhhhH-HHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHH
Q 013318 150 HEGTVIGSFNGE-FWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMC 217 (445)
Q Consensus 150 ~~~~~rg~~~g~-~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~ 217 (445)
|++.||++.|+ +.....+|..+||.+.+.+..+. ++ ...|.+.+++.+++.++.+
T Consensus 342 -p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-----------g~-~~~f~~~~~~~l~~~~~~~ 397 (417)
T 2cfq_A 342 -EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-----------GF-QGAYLVLGLVALGFTLISV 397 (417)
T ss_dssp -CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-----------HH-HHHHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-----------Cc-HHHHHHHHHHHHHHHHHHH
Confidence 56789999888 46677789999998887665322 22 2345555655556555443
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.41 E-value=2.5e-06 Score=85.86 Aligned_cols=138 Identities=12% Similarity=0.107 Sum_probs=79.9
Q ss_pred HHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHH--h-hh---cchhhHHhHHHHhhhhhHH-hhhhhhhHHHHhhhh
Q 013318 70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA--N-LF---PSWYTMVPASLYLGFAASI-IWVGEGTYLTAAALS 142 (445)
Q Consensus 70 ~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~--~-~~---~~~~~li~~r~l~Gig~g~-~~~~~~~~i~~~~~~ 142 (445)
....++.++++++.||+|||+.++.+.....+..+. . .. +++..++ .-.+...+.+. ..+....|.+|..
T Consensus 323 ~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~E~f-- 399 (491)
T 4gc0_A 323 VINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL-SMLFYVAAFAMSWGPVCWVLLSEIF-- 399 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHTTTTHHHHHHHHHSS--
T ss_pred HHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH-HHHHHHHHHHhHHHHHHHHHHHHhC--
Confidence 345567788999999999999999888765543332 1 11 2222221 11222222111 1233456778886
Q ss_pred hhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHH-HhccC
Q 013318 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILM-CFLRK 221 (445)
Q Consensus 143 ~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~-~~l~~ 221 (445)
|.+.|++.+|+..+...++..+++.+...+...... ....++ ...|++++++++++.+.. +++||
T Consensus 400 --------Pt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~-----~~~~~~-~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 400 --------PNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL-----VAHFHN-GFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp --------CTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH-----HHHHTT-CHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred --------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----Hhhhhh-hHHHHHHHHHHHHHHHHHHheecC
Confidence 567899999998888888887777554433221100 000111 224667777777766544 67887
Q ss_pred Ccc
Q 013318 222 EED 224 (445)
Q Consensus 222 ~~~ 224 (445)
++.
T Consensus 466 Tkg 468 (491)
T 4gc0_A 466 TKG 468 (491)
T ss_dssp CTT
T ss_pred CCC
Confidence 654
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=41.71 E-value=15 Score=19.16 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=10.7
Q ss_pred HHHHHHHhCcchh
Q 013318 79 ASLVVRVLGSKNA 91 (445)
Q Consensus 79 ~g~l~dr~G~k~~ 91 (445)
.|.++.+||||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 5788999999864
No 16
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=28.10 E-value=69 Score=19.98 Aligned_cols=14 Identities=7% Similarity=0.076 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 013318 423 CVALVGILFLTIQV 436 (445)
Q Consensus 423 ~~~~~~~~~~~~~~ 436 (445)
+++....+++++|.
T Consensus 26 i~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 26 VLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHhheehhh
Confidence 34444444454443
No 17
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=24.57 E-value=50 Score=19.62 Aligned_cols=13 Identities=8% Similarity=0.066 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHhh
Q 013318 427 VGILFLTIQVEKA 439 (445)
Q Consensus 427 ~~~~~~~~~~~~~ 439 (445)
+.|+++.++-+|+
T Consensus 15 ifYFl~iRPQ~Kr 27 (37)
T 2rdd_B 15 IFYFMILRPQQKR 27 (37)
T ss_dssp HHHHHTHHHHHHH
T ss_pred HHHHHHhhhHHHH
Confidence 3444444433333
No 18
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=23.62 E-value=32 Score=21.52 Aligned_cols=10 Identities=10% Similarity=0.155 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 013318 425 ALVGILFLTI 434 (445)
Q Consensus 425 ~~~~~~~~~~ 434 (445)
....++++++
T Consensus 27 ~~~~~~~~RR 36 (44)
T 2l2t_A 27 GLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 3333344443
No 19
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=23.37 E-value=35 Score=21.33 Aligned_cols=12 Identities=42% Similarity=0.285 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 013318 424 VALVGILFLTIQ 435 (445)
Q Consensus 424 ~~~~~~~~~~~~ 435 (445)
+....++++++|
T Consensus 27 i~~~~~~~~RRr 38 (44)
T 2ks1_B 27 VALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHhhhh
Confidence 333334444433
No 20
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=23.24 E-value=1.1e+02 Score=17.48 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=11.0
Q ss_pred HHHHHHH-HHHhccCCcccC
Q 013318 208 VITLGTI-LMCFLRKEEDKG 226 (445)
Q Consensus 208 l~~~~~~-l~~~l~~~~~~~ 226 (445)
.+.++++ ..++.|||++.+
T Consensus 11 ~~tlgiiFFAI~FRePPri~ 30 (32)
T 3arc_T 11 ACIIALFFFAIFFREPPRIT 30 (32)
T ss_dssp HHHHHHHHHHHHTSCCCCCC
T ss_pred HHHHHHHHHhhhhcCCCCCC
Confidence 3444444 347889887643
Done!