Query 013318
Match_columns 445
No_of_seqs 158 out of 1673
Neff 9.2
Searched_HMMs 13730
Date Mon Mar 25 08:20:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013318.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013318hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 100.0 1.1E-27 7.9E-32 237.5 37.2 369 39-432 36-430 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.9 7.2E-22 5.3E-26 191.4 24.7 375 26-432 5-399 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 98.9 1.7E-09 1.3E-13 104.8 12.1 142 282-429 51-200 (447)
4 d1pv7a_ f.38.1.2 (A:) Lactose 98.9 4.5E-09 3.3E-13 99.7 14.1 131 71-223 271-404 (417)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 14.5 81 0.0059 15.8 3.2 16 209-224 12-28 (30)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 7.4 2E+02 0.014 19.3 3.8 14 423-436 43-56 (100)
7 d1tbge_ a.137.3.1 (E:) Transdu 4.3 93 0.0068 19.8 0.2 21 5-25 45-65 (68)
8 d1vk5a_ a.220.1.1 (A:) Hypothe 4.0 1.4E+02 0.01 20.6 1.0 10 4-13 63-72 (121)
9 d2h8pc1 f.14.1.1 (C:22-78) Pot 3.3 4.6E+02 0.034 15.5 3.0 19 418-436 15-33 (57)
10 d1r3jc_ f.14.1.1 (C:) Potassiu 2.7 7.3E+02 0.053 16.0 4.7 30 411-440 73-102 (103)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.97 E-value=1.1e-27 Score=237.46 Aligned_cols=369 Identities=10% Similarity=-0.022 Sum_probs=224.9
Q ss_pred HHHHHHhhhHhhhhhhccCCCCchH----HHHHHHHHHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-h----hc
Q 013318 39 LIFLAYGAAQNLETTVNTEGNLGTI----SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L----FP 109 (445)
Q Consensus 39 ~~~~~~~~~~~~~~~i~~~~~~g~~----~~~~~~~~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~----~~ 109 (445)
+.+........+.|.+. |.+++.. ..+.....+++++++.|+++||+|||+++.++.++.++..+.. . .+
T Consensus 36 ~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (447)
T d1pw4a_ 36 AYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS 114 (447)
T ss_dssp HHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS
T ss_pred HHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhh
Confidence 33333344455566654 4455443 2455666778899999999999999999999998776655432 2 35
Q ss_pred chhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhHHHHHhhcCcccccc
Q 013318 110 SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKVCAA 189 (445)
Q Consensus 110 ~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~li~~~l~~~~~~~~~ 189 (445)
++..+++.|++.|++.|..+++...+++++. ++++|++++|+......+|..+|++++.......
T Consensus 115 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~----------~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~----- 179 (447)
T d1pw4a_ 115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW----------SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF----- 179 (447)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTC----------TTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-----
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH----------HhhcccccccccccccchhhhhhhhhhhhHhhhh-----
Confidence 7888999999999999999999999999987 5789999999999999999999998876654332
Q ss_pred ccCCCCCcchhHHHHHHHHHHHH-HHHHHhccCCcccCc---cccccc---c-hhhh--hHHHHHHHHHHHhhccchhHH
Q 013318 190 LLGGSTSGTTLLFIVFLGVITLG-TILMCFLRKEEDKGE---KETADA---S-VNFY--SYLVSLSKSITTLLADVRMLL 259 (445)
Q Consensus 190 ~~~~~~~w~~~~~~i~~~l~~~~-~~l~~~l~~~~~~~~---~~~~~~---~-~~~~--~~~~~~~~~~~~~l~~~~~~~ 259 (445)
.+||.. +.+..++..+. ++...+++++++... .++.+. + ..++ .+.........+.+++|.++.
T Consensus 180 -----~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (447)
T d1pw4a_ 180 -----NDWHAA-LYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWY 253 (447)
T ss_dssp -----CCSTTC-THHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHH
T ss_pred -----hccccc-chhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHH
Confidence 246543 44444444433 333345555432211 000000 0 0000 000000112334667777766
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccc-cccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHH
Q 013318 260 IIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWI 338 (445)
Q Consensus 260 l~~~~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~ 338 (445)
.....++..........+.+.++.+ .+.+..+.+.......++.++++++.|++.||.++++.................
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (447)
T d1pw4a_ 254 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI 333 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHH
Confidence 5544443333222222334433322 345556788888899999999999999999999876533212111111121111
Q ss_pred HhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHH-HHHHHHhhc----chhHH
Q 013318 339 LINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCAS-IAVVFFIGP----YISLQ 412 (445)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g-~~ig~~i~~----~~~~~ 412 (445)
.....+..+ .....++.++.|++.+...+..+++..+.+|++. +.+.|+.+....++ ..+++.+.+ ..++.
T Consensus 334 ~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~ 410 (447)
T d1pw4a_ 334 VYWMNPAGN---PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD 410 (447)
T ss_dssp HTTSCCTTC---HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSH
T ss_pred HHHhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 122222222 2455666777888888888888899999999875 45788887776664 444544443 33556
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013318 413 AMLIVMVVGICVALVGILFL 432 (445)
Q Consensus 413 ~~~~i~~~~~~~~~~~~~~~ 432 (445)
..++++.++.+++.++...+
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 411 GGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666655555544433
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.89 E-value=7.2e-22 Score=191.35 Aligned_cols=375 Identities=12% Similarity=0.077 Sum_probs=213.8
Q ss_pred ccchhHHHHHHHHHHHHHHhhhHhhhhh-hccCCCCchHHHHHHHH----HHHHhhhhHHHHHHHhCcchhhhhhhHHHH
Q 013318 26 YTRDVHILSCAFLLIFLAYGAAQNLETT-VNTEGNLGTISLGILYT----SFTCFSLVASLVVRVLGSKNALILGTTGYW 100 (445)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~-i~~~~~~g~~~~~~~~~----~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~ 100 (445)
++||++++.+.+++.+..+....++.|. +.++.+++....+.+.. ...+++++.|+++||+||||+++++..+..
T Consensus 5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~ 84 (417)
T d1pv7a_ 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML 84 (417)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 4688899988888887777665555554 44456777665544443 556788899999999999999999887766
Q ss_pred HHHHHh-hhc----chhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhH
Q 013318 101 LFVAAN-LFP----SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNL 175 (445)
Q Consensus 101 ~~~~~~-~~~----~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~lg~~iG~l 175 (445)
+..... ..+ .....+..+.+.|.+.+...........+..++ +++++.+..+........+..+|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (417)
T d1pv7a_ 85 VMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK--------VSRRSNFEFGRARMFGCVGWALGAS 156 (417)
T ss_dssp HTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHH--------HHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccc--------hhhhhHHHHHHHhhhhccccccccc
Confidence 544432 222 223334456666666655554444333333321 1335566677777777888888888
Q ss_pred HHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccCcccccccchhhhhHHHHHHHHHHHhhccc
Q 013318 176 ITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADV 255 (445)
Q Consensus 176 i~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 255 (445)
++..+... +|+...+...........+..++.+++++.++++.++++..+..... ...+..+++
T Consensus 157 ~~~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 220 (417)
T d1pv7a_ 157 IVGIMFTI------------NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLK----LALELFRQP 220 (417)
T ss_dssp HHHHHHHH------------CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHH----HHHHHTTSS
T ss_pred cccccccc------------cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhccccccc----ccccccccc
Confidence 87766532 23332233222222223333334444332221111111000001111 112233444
Q ss_pred hhHHHHHHHHHHHHHH-HH--HHhhhcccc-cccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHH
Q 013318 256 RMLLIIPLFAYSGLQQ-AF--VWAEFTKEI-VTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQ 331 (445)
Q Consensus 256 ~~~~l~~~~~~~g~~~-~f--~~~~~~~~~-~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~ 331 (445)
+.+............. .+ ....+.... .+.+.+....+.......++..++..+.+++.||.++|+. +..+.++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~-~~~~~~~~ 299 (417)
T d1pv7a_ 221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA-LLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHH-HHHHHHHH
T ss_pred cccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccc-hhhhHHHH
Confidence 4333222222111111 11 111121111 1122233456667778888999999999999999998874 45555555
Q ss_pred HHHHHHHHhhccCCCCccchhHHHHHHHHHhhhhhhhhhhhhHHHHhhccCCc-hhhHHH-HHHHHHHHHHHHHHhhcc-
Q 013318 332 VVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQ-LKVWQCASIAVVFFIGPY- 408 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~-~~~~~~~g~~ig~~i~~~- 408 (445)
.++.+ ...+.++ ....++..++.|++.+...+..++++.+.+|++. ++++|. ++....+|..+++.+.+.
T Consensus 300 ~~~~~--~~~~~~~-----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l 372 (417)
T d1pv7a_ 300 SVRII--GSSFATS-----ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372 (417)
T ss_dssp HHHHH--HHHTCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHhhh--ccccccc-----cchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433 2334433 2456677788899999999999999999998774 457775 455666776666555433
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHH
Q 013318 409 ---ISLQAMLIVMVVGICVALVGILFL 432 (445)
Q Consensus 409 ---~~~~~~~~i~~~~~~~~~~~~~~~ 432 (445)
.++...+.+.+++.++..+...+.
T Consensus 373 ~~~~g~~~~~~~~~~~~~~~~~~~~~~ 399 (417)
T d1pv7a_ 373 YESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777666666655554
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=98.95 E-value=1.7e-09 Score=104.81 Aligned_cols=142 Identities=11% Similarity=0.087 Sum_probs=98.7
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHhhhhccccCCCCccchHhHHHHHHHHHHHHHHhhccC--CCCccchhHHHHHHH
Q 013318 282 IVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSV--TSGVLGTLYPLIMAA 359 (445)
Q Consensus 282 ~~~~~~~~~~~g~~~~~~~i~~~~g~~~~G~l~d~~g~~~~~i~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 359 (445)
+.+.+++.+++|++.+.+.++..+++++.|+++||+|||+ ++..+.++..++.++ ....+ ... ....++..+
T Consensus 51 ~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~-~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~ 124 (447)
T d1pw4a_ 51 LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV-FLPAGLILAAAVMLF--MGFVPWATSS---IAVMFVLLF 124 (447)
T ss_dssp TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHH--HHHCHHHHSS---SSHHHHHHH
T ss_pred HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH-HHHHHHHHHHHHHhh--ccccchhhhh---HHHHHHHHH
Confidence 3455677789999999999999999999999999999987 455666665554332 12211 011 245677788
Q ss_pred HHhhhhhhhhhhhhHHHHhhccCCc-hhhHHHHHHHHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHHHHHHHH
Q 013318 360 LLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPY-----ISLQAMLIVMVVGICVALVGI 429 (445)
Q Consensus 360 l~G~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~~~~g~~ig~~i~~~-----~~~~~~~~i~~~~~~~~~~~~ 429 (445)
+.|++.+...+...+++++.+|+++ +.++++.+....+|..++..+... .+..+.+++...+.++..+..
T Consensus 125 ~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 200 (447)
T d1pw4a_ 125 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFA 200 (447)
T ss_dssp HHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHH
Confidence 8999999988999999999998774 457898888888887666544322 233444555554444444333
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=98.93 E-value=4.5e-09 Score=99.72 Aligned_cols=131 Identities=16% Similarity=0.070 Sum_probs=97.9
Q ss_pred HHHHhhhhHHHHHHHhCcchhhhhhhHHHHHHHHHh-hhcchhhHHhHHHHhhhhhHHhhhhhhhHHHHhhhhhhhccCC
Q 013318 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL 149 (445)
Q Consensus 71 ~~ai~~l~~g~l~dr~G~k~~l~~g~~~~~~~~~~~-~~~~~~~li~~r~l~Gig~g~~~~~~~~~i~~~~~~~~~~~~~ 149 (445)
...++..+.+++.||.|+|+.+.++..+..+..... ..++...+++..++.|++.+..++...+++.+..
T Consensus 271 ~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~--------- 341 (417)
T d1pv7a_ 271 LNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF--------- 341 (417)
T ss_dssp HHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---------
T ss_pred ccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHC---------
Confidence 445577789999999999999999988776655543 5678888888889999999999999999998887
Q ss_pred CccchhhhhhhHHH-HHHHHhhhhhhHHHHHhhcCccccccccCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCc
Q 013318 150 HEGTVIGSFNGEFW-GMFASHQFVGNLITLAVLKDDKVCAALLGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEE 223 (445)
Q Consensus 150 ~~~~~rg~~~g~~~-~~~~lg~~iG~li~~~l~~~~~~~~~~~~~~~~w~~~~~~i~~~l~~~~~~l~-~~l~~~~ 223 (445)
|+++||+..|+.. ....+|..+|+++.+.+..+. |++ ..|.+.+++.++..++. +++++++
T Consensus 342 -~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~-----------g~~-~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 342 -EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-----------GFQ-GAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp -CGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-----------CHH-HHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred -CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------CHH-HHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 5778999999754 455688899998887765432 333 34556666665555544 4455443
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.46 E-value=81 Score=15.79 Aligned_cols=16 Identities=13% Similarity=0.316 Sum_probs=9.1
Q ss_pred HHHHHH-HHHhccCCcc
Q 013318 209 ITLGTI-LMCFLRKEED 224 (445)
Q Consensus 209 ~~~~~~-l~~~l~~~~~ 224 (445)
+++++. ..+|.++|++
T Consensus 12 c~i~lfffaiffreppr 28 (30)
T d2axtt1 12 CIIALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 445544 3467887764
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.41 E-value=2e+02 Score=19.34 Aligned_cols=14 Identities=7% Similarity=-0.019 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 013318 423 CVALVGILFLTIQV 436 (445)
Q Consensus 423 ~~~~~~~~~~~~~~ 436 (445)
+.+...+...+.|.
T Consensus 43 V~~~l~~~~~~~r~ 56 (100)
T d3dtub2 43 VTLLILYAVWRFHE 56 (100)
T ss_dssp HHHHHHHHHHHHBT
T ss_pred HHHHHHHHhhhhhc
Confidence 33333343333333
No 7
>d1tbge_ a.137.3.1 (E:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.34 E-value=93 Score=19.77 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=12.4
Q ss_pred CCcCcccccccccccccCccc
Q 013318 5 DSRDEEAPLVADSLQVLTPKN 25 (445)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~ 25 (445)
..+..++|||..-....|+.+
T Consensus 45 e~~~~~DpLl~g~p~~~NPfk 65 (68)
T d1tbge_ 45 EERSGEDPLVKGIPEDKNPFK 65 (68)
T ss_dssp HTTTTSCHHHHCCCGGGCTTC
T ss_pred HhcCCCCCcccCCCCCCCCCC
Confidence 456788999874333334443
No 8
>d1vk5a_ a.220.1.1 (A:) Hypothetical protein At3g22680 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=4.05 E-value=1.4e+02 Score=20.64 Aligned_cols=10 Identities=30% Similarity=0.401 Sum_probs=6.1
Q ss_pred CCCcCccccc
Q 013318 4 VDSRDEEAPL 13 (445)
Q Consensus 4 ~~~~~~~~~~ 13 (445)
++|.||++||
T Consensus 63 igs~dE~k~l 72 (121)
T d1vk5a_ 63 FGTDSEEQRL 72 (121)
T ss_dssp TTCSSCCCCG
T ss_pred cCCccccCch
Confidence 4556666666
No 9
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.35 E-value=4.6e+02 Score=15.48 Aligned_cols=19 Identities=5% Similarity=-0.020 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013318 418 MVVGICVALVGILFLTIQV 436 (445)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~ 436 (445)
+..+.+++..+....|+..
T Consensus 15 ~~i~i~~~s~~~y~~E~~~ 33 (57)
T d2h8pc1 15 LVIVLLAGSYLAVLAERGA 33 (57)
T ss_dssp HHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 3333344444455566544
No 10
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=2.69 E-value=7.3e+02 Score=15.98 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013318 411 LQAMLIVMVVGICVALVGILFLTIQVEKAF 440 (445)
Q Consensus 411 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 440 (445)
......+......++.+.-.+.+++.|||+
T Consensus 73 ~~~~~Gi~~~~~~~~~i~~~~~~~~~~rr~ 102 (103)
T d1r3jc_ 73 VVMVAGITSFGLVTAALATWFVGREQERRG 102 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Done!