BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013319
(445 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 53/65 (81%)
Query: 31 DLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKN 90
D Y+VLGV R ASQ +I+KA+ KL+ ++HPDKNK+ A+++F +I+ AY+ILS+EEKR N
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTN 77
Query: 91 YDLYG 95
YD YG
Sbjct: 78 YDHYG 82
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 31 DLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKA-AQEKFAEINNAYDILSDEEKRK 89
D Y++LGV RNASQ+EI+KA+++L+ +YHPD NK+ A+EKF+++ AY++LSDE KRK
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 90 NYDLYG 95
YD YG
Sbjct: 68 QYDAYG 73
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 49/63 (77%)
Query: 33 YKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYD 92
Y +LGV ++AS+R+I+KAFHKL+++YHPDKNK+ A+ KF EI AY+ LSD +RK YD
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69
Query: 93 LYG 95
G
Sbjct: 70 TLG 72
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 52/72 (72%), Gaps = 2/72 (2%)
Query: 31 DLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKN 90
D Y+ LG+ R AS EI++A+ + +L+YHPDKNK A+EKF EI AYD+LSD KR+
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 91 YDLYGDE--KGS 100
+D YG+E KGS
Sbjct: 64 FDRYGEEGLKGS 75
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 60/91 (65%), Gaps = 6/91 (6%)
Query: 32 LYKVLGVERNASQREIQKAFHKLSLQYHPDKN-KNKAAQEKFAEINNAYDILSDEEKRKN 90
LY VLG+++NA+ +I+K++ KL+L+YHPDKN N A +KF EINNA+ IL+D KR
Sbjct: 19 LYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNI 78
Query: 91 YDLYGDEKGSPG-FDAGHPGNQGGYTYFTSG 120
YD Y GS G + A G + TYF SG
Sbjct: 79 YDKY----GSLGLYVAEQFGEENVNTYFVSG 105
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 31 DLYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRK 89
D Y++LGV + A +REI+KA+ +L+++YHPD+N+ +K A+ KF EI AY++L+D +KR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 90 NYDLYG 95
YD YG
Sbjct: 64 AYDQYG 69
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 31 DLYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRK 89
D Y++LGV + A +REI+KA+ +L+++YHPD+N+ +K A+ KF EI AY++L+D +KR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 90 NYDLYG 95
YD YG
Sbjct: 64 AYDQYG 69
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 31 DLYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRK 89
D Y++LGV + A +REI+KA+ +L+++YHPD+N+ +K A+ KF EI AY++L+D +KR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 90 NYDLYG 95
YD YG
Sbjct: 64 AYDQYG 69
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 45/65 (69%)
Query: 31 DLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKN 90
D Y++LGV R AS +++KA+ +L+L++HPDKN A E F I AY +LS+ EKRK
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 91 YDLYG 95
YD +G
Sbjct: 68 YDQFG 72
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 53/84 (63%), Gaps = 9/84 (10%)
Query: 31 DLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKA-AQEKFAEINNAYDILSDEEKRK 89
+ Y +LGV + AS REI++AF KL+L+ HPDKN N A F +IN AY++L DE+ RK
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 90 NYDLYGDEKGSPGFDAGHPGNQGG 113
YD YG++ G NQGG
Sbjct: 82 KYDKYGEK--------GLEDNQGG 97
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
Query: 214 VEKGMTWLLFFYSP-SSNRDGYESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPR 272
V G W + FYSP SS+ E A ++G L++G++NC + LC+ GV+
Sbjct: 130 VNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYP 189
Query: 273 SPRIFAYSYKAGDKGSLVEYNEHLVAKNLKSFCRDHLPRFSKRIS----LNRIEFTFDA 327
S IF A V+YN ++L +F H+ +S +N IE F A
Sbjct: 190 SLFIFRSGMAA------VKYNGDRSKESLVAFAMQHVRSTVTELSTGNFVNAIETAFAA 242
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 3/121 (2%)
Query: 204 LNLQVFKKEIVEKGMTWLLFFYSP-SSNRDGYESVIEEVANSMEGALKVGSINCETEASL 262
L Q F +++++ W++ FY+P S + E +A ++G ++ G ++C+
Sbjct: 662 LTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQT 721
Query: 263 CKELGVHRPRSPRIFAYSYKAGDKGSLVEYNEHLVAKNLKSFCRDHLPRFSKRISLNRIE 322
C++ G+ P + Y Y+ K E AK + + L ++ N+ E
Sbjct: 722 CQKAGIK--AYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQVKRNKDE 779
Query: 323 F 323
Sbjct: 780 L 780
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 28/223 (12%)
Query: 219 TWLLFFYSPSSNRDGYESVIEE---VANSMEGALKVGSINCETEASLCKELGVHRPRSPR 275
W++ FYSP S+ + ++ E +A ++ G + VGS++C S C + V R P
Sbjct: 565 VWMVDFYSPWSHPS--QVLMPEWKRMARTLTGLINVGSVDCGQYHSFCTQENVQ--RYPE 620
Query: 276 IFAYSYKAGDKGSLVEYN-EHLVAKNLKSFCRDHLPR---------FSKRISLNRIEFTF 325
I Y K+ YN + A +L+S+ LP+ F++++ + +
Sbjct: 621 IRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDLTPQTFNEKVLQGKTHWVV 680
Query: 326 DAKARL--PSVLLLSTKKETPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPA 383
D A PS + E ++ R++ G R D + + + +K G+ A P+
Sbjct: 681 DFYAPWSGPSQ---NFAPEFELLARMIKGKV--RAGKVDCQAYPQT---CQKAGIKAYPS 732
Query: 384 IVGW-LSNGEKDVLKTGISVKDQKSSIHELSKLLDGLKKRTKR 425
+ + +K + + I+ +D K+ + L+ L+ + KR
Sbjct: 733 VKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQVKR 775
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 220 WLLFFYSP-SSNRDGYESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFA 278
WL+ F++P S + + + + G LKVG+++C LC + + +F
Sbjct: 458 WLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVF- 516
Query: 279 YSYKAGDKGSLVEYNEHLVAKNLKSFCRD 307
++ S+ EY H A+ + F D
Sbjct: 517 ------NQSSIHEYEGHHSAEQILEFIED 539
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 217 GMTWLLFFYSPSSNRDGYESVIEEVANSMEGALKVGSINCETEASLCKEL 266
G+ WL+ F S + ++ + ++ ++G + VG ++C+ + SLCK L
Sbjct: 243 GVGWLITFCSKGEDCLTSQTRLR-LSGMLDGLVNVGWVDCDAQDSLCKSL 291
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 53/84 (63%), Gaps = 9/84 (10%)
Query: 31 DLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKA-AQEKFAEINNAYDILSDEEKRK 89
+ Y +LGV + AS REI++AF KL+L+ HPDKN N A F +IN AY++L DE+ RK
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 90 NYDLYGDEKGSPGFDAGHPGNQGG 113
YD YG++ G NQGG
Sbjct: 63 KYDKYGEK--------GLEDNQGG 78
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 214 VEKGMTWLLFFYSP-SSNRDGYESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPR 272
V G W + FYSP S+ E A ++G L++G++NC + LC+ GV+
Sbjct: 111 VNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYP 170
Query: 273 SPRIFAYSYKAGDKGSLVEYNEHLVAKNLKSFCRDHL 309
S IF A V+YN ++L +F H+
Sbjct: 171 SLFIFRSGMAA------VKYNGDRSKESLVAFAMQHV 201
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 28 KTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEK 87
K Y VLGV+ NA+Q E++KA+ KL+L+YHPDKN N+ EKF +I+ AY++LSD +K
Sbjct: 4 KETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEG--EKFKQISQAYEVLSDAKK 61
Query: 88 RKNYDLYGDE 97
R+ YD G++
Sbjct: 62 RELYDKGGEQ 71
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 54/74 (72%), Gaps = 2/74 (2%)
Query: 24 NAKAKTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILS 83
NA K Y VLGV+ +AS E++KA+ K++L++HPDKN + A E+F +I+ AY++LS
Sbjct: 2 NAMVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGA--EQFKQISQAYEVLS 59
Query: 84 DEEKRKNYDLYGDE 97
DE+KR+ YD G+E
Sbjct: 60 DEKKRQIYDQGGEE 73
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 59/93 (63%), Gaps = 8/93 (8%)
Query: 33 YKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKA--AQEKFAEINNAYDILSDEEKRKN 90
Y++L V R+AS +I+KA+ + +LQ+HPDKN + A++KF E+ AY++LSD+ KR+
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 91 YDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPG 123
YD YG E G G G + G SGGPG
Sbjct: 65 YDRYGRE-GLTGTGTGPSRAEAG-----SGGPG 91
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Query: 30 VDLYKVLGVERNASQREIQKAFHKLSLQYHPDKN-KNK-AAQEKFAEINNAYDILSDEEK 87
VD Y+VL V R AS I+KA+ KL+L++HPDKN +NK A+ +F ++ AY++LSD +K
Sbjct: 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68
Query: 88 RKNYDLYG 95
R YD YG
Sbjct: 69 RDIYDRYG 76
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 24 NAKAKTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILS 83
NA K LY +LGV +A+++E++K + K +L+YHPDK EKF EI+ A++IL+
Sbjct: 2 NAMVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDT--EKFKEISEAFEILN 59
Query: 84 DEEKRKNYDLYGDE 97
D +KR+ YD YG E
Sbjct: 60 DPQKREIYDQYGLE 73
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 30 VDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN--KAAQEKFAEINNAYDILSDEEK 87
+ Y+VLGV+ +AS +I+KA+ KL+L++HPDKN + + A++KF ++ AY++LSD +K
Sbjct: 9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKK 68
Query: 88 RKNYDLYG 95
R YD G
Sbjct: 69 RSLYDRAG 76
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 31 DLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKN 90
D Y +LGV+ + I+ A+ +L+ +YHPD +K A+ KF ++ A+++L DE++R
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 91 YDLYGDEKGSPGF 103
YD + PGF
Sbjct: 89 YDQLWQHRNDPGF 101
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 48/66 (72%), Gaps = 4/66 (6%)
Query: 31 DLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN----KAAQEKFAEINNAYDILSDEE 86
D YK+LGV+RNA ++EI KA+ KL+LQ+HPD +N K A++KF +I A ++LSD E
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 87 KRKNYD 92
RK +D
Sbjct: 443 MRKKFD 448
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 48/66 (72%), Gaps = 4/66 (6%)
Query: 31 DLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN----KAAQEKFAEINNAYDILSDEE 86
D YK+LGV+RNA ++EI KA+ KL+LQ+HPD +N K A++KF +I A ++LSD E
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 87 KRKNYD 92
RK +D
Sbjct: 443 XRKKFD 448
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 41/62 (66%)
Query: 31 DLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKN 90
D Y ++GV+ + I+ A+ +L+ +YHPD +K A+ +F E+ A+++LSDE++R
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 91 YD 92
YD
Sbjct: 66 YD 67
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 31 DLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN-------KAAQEKFAEINNAYDILS 83
D Y +LG + +A+ ++++ + KL L YHPDK + +KF EI+ A+ IL
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 84 DEEKRKNYDL 93
+EE +K YDL
Sbjct: 77 NEETKKKYDL 86
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 32 LYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKA-AQEKFAEINNAYDILSDEEKRKN 90
LY +LGV A+Q +I+ A+++ YHPD+N A A E+F I+ AY +L R+
Sbjct: 19 LYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRK 78
Query: 91 YD--LYGDE 97
YD L DE
Sbjct: 79 YDRGLLSDE 87
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 31 DLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN-------KAAQEKFAEINNAYDILS 83
D Y +LG + +A+ ++++ + KL L YHPDK + +KF EI+ A+ IL
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 84 DEEKRKNYDL 93
+EE ++ YDL
Sbjct: 71 NEETKREYDL 80
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 16/92 (17%)
Query: 31 DLYKVLGVERNA-SQREIQKAFHKLSLQYHPDKNKNKA----AQEKFAEINNAYDILSDE 85
+ Y VL V R ++++ KA+ L+ ++HPD+ KNK A+E+F I AY+ L D+
Sbjct: 16 NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDD 75
Query: 86 EKRKNYDLYGDEKGSPGFDAGHPGNQGGYTYF 117
E + NYD Y D HP +Q Y Y+
Sbjct: 76 EAKTNYDYYLD----------HP-DQRFYNYY 96
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKN-KNKAAQEKFAEINNAYDILSDEEK 87
T D Y +LG + +S +I F +L+ HPDK+ +N A E F ++ A +IL++EE
Sbjct: 19 TEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEES 78
Query: 88 RKNYDLY 94
R YD +
Sbjct: 79 RARYDHW 85
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 31 DLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDIL 82
D + +LGV+ AS+ E+ KA+ KL++ HPDK +++ F + NA L
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 36.2 bits (82), Expect = 0.041, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 204 LNLQVFKKEIVEKGMTWLLFFYSPSSNR-DGYESVIEEVANSMEGALKVGSINCETEASL 262
L Q F +++++ W++ FY+P + E +A ++G ++ G ++C+
Sbjct: 8 LTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQT 67
Query: 263 CKELGVHRPRSPRIFAY 279
C++ G+ S +++ Y
Sbjct: 68 CQKAGIKAYPSVKLYQY 84
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 209 FKKEIVEKGMTWLLFFYSP-SSNRDGYESVIEEVANSMEGALKVGSINCETEASLCKELG 267
F +E+++ WL+ FY+P + ++ A +++ +KVG++N + SL + G
Sbjct: 27 FNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYG 86
Query: 268 VHRPRSPRIFA 278
V + +IF
Sbjct: 87 VQGFPTIKIFG 97
>pdb|2PF4|E Chain E, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|F Chain F, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|G Chain G, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|H Chain H, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
Length = 174
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 26 KAKTVDLYKVLGVERNA--SQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILS 83
+ +++ L +LG+ER+A + ++KA+ K ++HPDK + +EK ++N Y +
Sbjct: 7 REESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKME 63
Query: 84 D 84
D
Sbjct: 64 D 64
>pdb|1GH6|A Chain A, Retinoblastoma Pocket Complexed With Sv40 Large T
Antigen
Length = 114
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 26 KAKTVDLYKVLGVERNASQR--EIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILS 83
+ +++ L +LG+ER+A ++KA+ K ++HPDK + +EK ++N Y +
Sbjct: 4 REESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKME 60
Query: 84 D 84
D
Sbjct: 61 D 61
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 45 REIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDL 93
R +QK FH + ++++ A Q+ A+IN+AY L D +R Y L
Sbjct: 28 RALQKRFHPDNFATASERDRLXAVQQA-AQINDAYQTLKDPLRRAEYLL 75
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 44 QREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDL 93
Q ++K + +L Q+HPD + + E+ + +N AY L D +R Y L
Sbjct: 32 QSRLRKEYRQLQAQHHPDMAQQGS--EQSSTLNQAYHTLKDPLRRSQYML 79
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 44 QREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDL 93
Q ++K + +L Q+HPD + + E+ + +N AY L D +R Y L
Sbjct: 24 QSRLRKEYRQLQAQHHPDMAQQGS--EQSSTLNQAYHTLKDPLRRSQYML 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,317,234
Number of Sequences: 62578
Number of extensions: 462974
Number of successful extensions: 1023
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 965
Number of HSP's gapped (non-prelim): 42
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)