Query 013319
Match_columns 445
No_of_seqs 465 out of 4013
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 02:39:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 1.2E-27 2.7E-32 231.8 11.8 71 28-98 2-73 (371)
2 KOG0713 Molecular chaperone (D 99.9 1.9E-25 4E-30 210.8 9.9 73 27-99 13-86 (336)
3 KOG0190 Protein disulfide isom 99.9 1.8E-24 3.9E-29 216.9 16.7 217 197-437 23-248 (493)
4 KOG4277 Uncharacterized conser 99.9 6.8E-22 1.5E-26 182.1 11.8 192 201-409 30-227 (468)
5 cd03006 PDI_a_EFP1_N PDIa fami 99.8 2.5E-21 5.4E-26 160.6 9.2 104 196-305 6-113 (113)
6 KOG0712 Molecular chaperone (D 99.8 2.2E-21 4.8E-26 185.8 9.7 68 28-97 2-69 (337)
7 KOG0191 Thioredoxin/protein di 99.8 4.2E-20 9.2E-25 186.6 18.4 207 201-415 31-254 (383)
8 TIGR01130 ER_PDI_fam protein d 99.8 8.2E-20 1.8E-24 189.1 18.2 214 200-436 2-227 (462)
9 PRK14296 chaperone protein Dna 99.8 4.6E-20 1E-24 184.2 13.2 69 29-97 3-71 (372)
10 PRK14286 chaperone protein Dna 99.8 5.1E-20 1.1E-24 184.0 12.8 69 29-97 3-72 (372)
11 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 3.5E-20 7.6E-25 151.4 9.4 99 200-305 2-101 (101)
12 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 6.2E-20 1.3E-24 150.7 10.0 101 200-305 2-104 (104)
13 cd03065 PDI_b_Calsequestrin_N 99.8 2.6E-19 5.6E-24 149.5 11.5 107 196-309 6-119 (120)
14 PRK14279 chaperone protein Dna 99.8 1E-19 2.3E-24 182.9 10.7 69 29-97 8-77 (392)
15 PTZ00102 disulphide isomerase; 99.8 1.1E-18 2.4E-23 181.7 18.4 206 199-436 32-242 (477)
16 PRK14287 chaperone protein Dna 99.8 2.2E-19 4.7E-24 179.5 10.0 69 29-97 3-71 (371)
17 cd02996 PDI_a_ERp44 PDIa famil 99.8 4.9E-19 1.1E-23 146.4 9.5 100 200-305 2-108 (108)
18 PF00085 Thioredoxin: Thioredo 99.8 6E-19 1.3E-23 144.0 9.3 101 201-308 1-103 (103)
19 PRK14277 chaperone protein Dna 99.8 1.6E-18 3.5E-23 174.2 14.2 69 29-97 4-73 (386)
20 PRK14276 chaperone protein Dna 99.8 5E-19 1.1E-23 177.5 10.2 69 29-97 3-71 (380)
21 KOG1731 FAD-dependent sulfhydr 99.8 8.4E-19 1.8E-23 175.4 11.5 223 190-424 30-273 (606)
22 KOG0910 Thioredoxin-like prote 99.8 8.7E-19 1.9E-23 148.3 9.4 104 200-310 44-149 (150)
23 cd02994 PDI_a_TMX PDIa family, 99.8 1.2E-18 2.6E-23 142.2 10.1 98 200-307 2-101 (101)
24 PRK14291 chaperone protein Dna 99.8 1.1E-18 2.5E-23 175.1 11.8 69 29-97 2-70 (382)
25 PRK14278 chaperone protein Dna 99.8 5.8E-19 1.2E-23 176.8 9.4 68 30-97 3-70 (378)
26 PRK14280 chaperone protein Dna 99.8 6.6E-19 1.4E-23 176.4 9.3 69 29-97 3-71 (376)
27 cd03002 PDI_a_MPD1_like PDI fa 99.8 1.5E-18 3.3E-23 143.5 9.8 103 201-305 2-108 (109)
28 PRK14299 chaperone protein Dna 99.8 1.1E-18 2.4E-23 169.0 10.1 69 29-97 3-71 (291)
29 PRK14298 chaperone protein Dna 99.8 3.2E-18 6.9E-23 171.3 12.8 69 29-97 4-72 (377)
30 PRK14288 chaperone protein Dna 99.8 6.8E-19 1.5E-23 175.8 7.7 69 29-97 2-71 (369)
31 PRK14301 chaperone protein Dna 99.8 3.4E-18 7.4E-23 171.0 12.7 69 29-97 3-72 (373)
32 PRK10767 chaperone protein Dna 99.8 3.7E-18 8.1E-23 171.1 13.0 69 29-97 3-72 (371)
33 KOG0912 Thiol-disulfide isomer 99.8 5.4E-18 1.2E-22 157.0 12.5 194 204-413 1-208 (375)
34 PRK14285 chaperone protein Dna 99.8 1.2E-18 2.6E-23 173.8 8.9 68 30-97 3-71 (365)
35 PRK14294 chaperone protein Dna 99.8 2E-18 4.4E-23 172.5 9.8 69 29-97 3-72 (366)
36 cd03001 PDI_a_P5 PDIa family, 99.8 4.6E-18 1E-22 139.0 10.1 101 200-305 1-102 (103)
37 PRK14297 chaperone protein Dna 99.7 2.5E-18 5.4E-23 172.6 9.5 69 29-97 3-72 (380)
38 PRK14292 chaperone protein Dna 99.7 6.8E-18 1.5E-22 169.2 12.3 68 30-97 2-69 (371)
39 PRK14300 chaperone protein Dna 99.7 7.3E-18 1.6E-22 168.7 11.8 68 30-97 3-70 (372)
40 PRK14290 chaperone protein Dna 99.7 1.3E-17 2.9E-22 166.5 12.7 68 30-97 3-72 (365)
41 PRK14281 chaperone protein Dna 99.7 1.3E-17 2.8E-22 168.2 12.6 69 30-98 3-72 (397)
42 PRK14295 chaperone protein Dna 99.7 8.4E-18 1.8E-22 168.9 10.8 69 29-97 8-81 (389)
43 COG3118 Thioredoxin domain-con 99.7 6.9E-18 1.5E-22 157.7 9.2 105 200-311 24-132 (304)
44 PTZ00443 Thioredoxin domain-co 99.7 8E-18 1.7E-22 155.7 9.5 106 198-310 29-140 (224)
45 cd03007 PDI_a_ERp29_N PDIa fam 99.7 5.4E-18 1.2E-22 139.9 7.3 99 201-308 3-115 (116)
46 cd02993 PDI_a_APS_reductase PD 99.7 1.2E-17 2.6E-22 138.4 9.3 101 200-305 2-109 (109)
47 KOG0721 Molecular chaperone (D 99.7 1E-17 2.2E-22 148.4 9.3 81 22-102 91-172 (230)
48 PRK14289 chaperone protein Dna 99.7 3.6E-17 7.8E-22 164.7 13.6 69 29-97 4-73 (386)
49 cd02963 TRX_DnaJ TRX domain, D 99.7 1.9E-17 4.2E-22 137.5 9.7 99 202-307 7-110 (111)
50 TIGR02349 DnaJ_bact chaperone 99.7 3.1E-17 6.7E-22 163.7 12.9 67 31-97 1-67 (354)
51 PRK09381 trxA thioredoxin; Pro 99.7 3.3E-17 7.2E-22 135.6 10.9 105 198-309 2-108 (109)
52 cd03005 PDI_a_ERp46 PDIa famil 99.7 3.5E-17 7.5E-22 133.5 9.1 97 201-305 2-102 (102)
53 PRK14283 chaperone protein Dna 99.7 1.4E-17 3.1E-22 167.1 7.6 70 28-97 3-72 (378)
54 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 4.5E-17 9.8E-22 133.2 8.8 101 200-305 1-104 (104)
55 PRK14282 chaperone protein Dna 99.7 3E-17 6.5E-22 164.2 9.3 69 29-97 3-73 (369)
56 PTZ00037 DnaJ_C chaperone prot 99.7 2.3E-17 4.9E-22 166.5 6.9 67 28-97 26-92 (421)
57 cd02956 ybbN ybbN protein fami 99.7 1.2E-16 2.7E-21 128.9 9.5 91 208-305 2-95 (96)
58 KOG0716 Molecular chaperone (D 99.7 2.5E-17 5.5E-22 150.9 5.9 71 28-98 29-100 (279)
59 PF00226 DnaJ: DnaJ domain; I 99.7 4.2E-17 9.1E-22 121.5 6.2 62 31-92 1-64 (64)
60 KOG0624 dsRNA-activated protei 99.7 7.4E-17 1.6E-21 152.2 9.1 69 26-94 390-462 (504)
61 TIGR02187 GlrX_arch Glutaredox 99.7 1.4E-15 3.1E-20 141.4 17.6 192 203-409 7-212 (215)
62 TIGR01126 pdi_dom protein disu 99.7 1.7E-16 3.7E-21 129.2 10.1 98 204-308 1-101 (102)
63 cd02999 PDI_a_ERp44_like PDIa 99.7 1.4E-16 2.9E-21 129.8 9.1 89 209-305 9-100 (100)
64 cd02998 PDI_a_ERp38 PDIa famil 99.7 1.9E-16 4.2E-21 129.6 8.8 100 201-305 2-105 (105)
65 PRK14284 chaperone protein Dna 99.7 9.1E-17 2E-21 161.9 7.8 68 30-97 1-69 (391)
66 cd02992 PDI_a_QSOX PDIa family 99.7 4.3E-16 9.3E-21 130.0 9.8 102 200-303 2-110 (114)
67 KOG0718 Molecular chaperone (D 99.7 1.2E-16 2.6E-21 155.7 7.2 82 28-109 7-93 (546)
68 cd02997 PDI_a_PDIR PDIa family 99.7 5E-16 1.1E-20 127.0 9.4 97 201-305 2-104 (104)
69 KOG0691 Molecular chaperone (D 99.6 2.6E-16 5.7E-21 149.6 7.3 69 29-97 4-73 (296)
70 cd03000 PDI_a_TMX3 PDIa family 99.6 1.5E-15 3.3E-20 124.5 10.0 97 202-308 3-103 (104)
71 KOG0715 Molecular chaperone (D 99.6 3.1E-16 6.8E-21 150.5 6.8 69 29-97 42-110 (288)
72 KOG0717 Molecular chaperone (D 99.6 2E-16 4.4E-21 154.1 5.2 74 26-99 4-79 (508)
73 PRK14293 chaperone protein Dna 99.6 3.8E-16 8.2E-21 156.6 7.4 68 30-97 3-70 (374)
74 PRK10266 curved DNA-binding pr 99.6 4.2E-16 9.1E-21 152.2 7.1 68 29-96 3-70 (306)
75 PTZ00341 Ring-infected erythro 99.6 5.6E-16 1.2E-20 163.7 8.4 71 27-97 570-640 (1136)
76 cd02961 PDI_a_family Protein D 99.6 1.3E-15 2.9E-20 123.0 8.8 98 202-305 1-101 (101)
77 PRK10996 thioredoxin 2; Provis 99.6 2.3E-15 5.1E-20 130.1 10.8 102 200-309 36-139 (139)
78 KOG0190 Protein disulfide isom 99.6 5.4E-16 1.2E-20 156.1 7.6 105 199-309 366-473 (493)
79 PLN02309 5'-adenylylsulfate re 99.6 2.1E-15 4.5E-20 152.9 11.0 107 197-308 343-456 (457)
80 PHA02278 thioredoxin-like prot 99.6 2.4E-15 5.1E-20 122.7 9.1 92 205-304 3-100 (103)
81 TIGR00424 APS_reduc 5'-adenyly 99.6 2.2E-15 4.9E-20 152.7 10.8 108 194-307 347-461 (463)
82 TIGR01068 thioredoxin thioredo 99.6 4.9E-15 1.1E-19 120.2 10.8 99 204-309 1-101 (101)
83 cd02962 TMX2 TMX2 family; comp 99.6 3.7E-15 8.1E-20 129.9 9.3 84 195-280 24-116 (152)
84 cd02954 DIM1 Dim1 family; Dim1 99.6 2.9E-15 6.2E-20 123.3 7.9 73 206-280 2-76 (114)
85 KOG0719 Molecular chaperone (D 99.6 2.1E-15 4.4E-20 134.9 6.5 69 29-97 13-84 (264)
86 cd02985 TRX_CDSP32 TRX family, 99.6 1.4E-14 3E-19 118.7 10.3 93 205-306 2-100 (103)
87 cd02957 Phd_like Phosducin (Ph 99.6 1.2E-14 2.6E-19 121.1 9.8 77 200-280 5-84 (113)
88 PF01216 Calsequestrin: Calseq 99.6 1.2E-13 2.7E-18 130.9 17.5 218 195-438 30-261 (383)
89 cd02948 TRX_NDPK TRX domain, T 99.6 1.4E-14 3E-19 118.5 9.6 94 204-307 5-101 (102)
90 smart00271 DnaJ DnaJ molecular 99.6 4.4E-15 9.6E-20 109.0 5.8 57 30-86 1-59 (60)
91 cd02965 HyaE HyaE family; HyaE 99.6 1.8E-14 4E-19 117.7 9.4 94 201-302 12-109 (111)
92 cd06257 DnaJ DnaJ domain or J- 99.5 1.2E-14 2.6E-19 104.7 6.6 54 31-84 1-55 (55)
93 PTZ00102 disulphide isomerase; 99.5 4.7E-14 1E-18 146.9 10.4 109 198-311 356-467 (477)
94 cd02984 TRX_PICOT TRX domain, 99.5 6.4E-14 1.4E-18 113.1 9.0 93 205-305 1-96 (97)
95 KOG0907 Thioredoxin [Posttrans 99.5 1.4E-13 2.9E-18 112.5 10.2 86 213-307 17-104 (106)
96 KOG0722 Molecular chaperone (D 99.5 2.5E-14 5.3E-19 129.3 6.3 70 25-94 28-97 (329)
97 TIGR03835 termin_org_DnaJ term 99.5 3.3E-14 7.1E-19 147.3 7.9 69 30-98 2-70 (871)
98 PHA03102 Small T antigen; Revi 99.5 2.9E-14 6.3E-19 122.9 6.3 67 29-98 4-72 (153)
99 KOG0191 Thioredoxin/protein di 99.5 1.1E-13 2.4E-18 139.9 11.1 185 200-390 145-354 (383)
100 cd02989 Phd_like_TxnDC9 Phosdu 99.5 1.8E-13 4E-18 113.9 9.9 77 201-281 6-84 (113)
101 KOG0550 Molecular chaperone (D 99.5 7.4E-14 1.6E-18 135.1 7.1 68 26-93 369-438 (486)
102 PLN00410 U5 snRNP protein, DIM 99.5 3.2E-13 6.9E-18 115.6 10.0 102 201-309 5-120 (142)
103 cd02949 TRX_NTR TRX domain, no 99.5 3E-13 6.6E-18 109.4 9.1 90 209-305 5-96 (97)
104 PTZ00051 thioredoxin; Provisio 99.5 2.9E-13 6.2E-18 109.6 9.0 92 201-302 2-96 (98)
105 cd02953 DsbDgamma DsbD gamma f 99.4 3.6E-13 7.7E-18 110.4 8.1 93 207-305 2-103 (104)
106 cd02950 TxlA TRX-like protein 99.4 6.7E-13 1.5E-17 115.1 9.8 98 206-310 10-111 (142)
107 cd02987 Phd_like_Phd Phosducin 99.4 8.8E-13 1.9E-17 118.2 9.8 98 201-307 64-173 (175)
108 cd02986 DLP Dim1 family, Dim1- 99.4 1E-12 2.2E-17 107.4 8.1 73 206-280 2-76 (114)
109 COG2214 CbpA DnaJ-class molecu 99.4 5.6E-13 1.2E-17 124.2 7.1 68 28-95 4-73 (237)
110 TIGR01130 ER_PDI_fam protein d 99.4 1.1E-12 2.4E-17 135.8 9.5 107 198-310 345-455 (462)
111 cd02947 TRX_family TRX family; 99.4 2.7E-12 6E-17 101.4 9.2 89 208-305 2-92 (93)
112 KOG0720 Molecular chaperone (D 99.4 7.9E-13 1.7E-17 129.4 6.9 68 27-94 232-299 (490)
113 cd02975 PfPDO_like_N Pyrococcu 99.3 5.3E-12 1.2E-16 105.1 9.9 97 207-309 13-110 (113)
114 PRK01356 hscB co-chaperone Hsc 99.3 2.1E-12 4.5E-17 114.2 7.8 65 30-94 2-72 (166)
115 COG5407 SEC63 Preprotein trans 99.3 2.9E-12 6.3E-17 124.6 8.9 79 26-104 94-178 (610)
116 KOG0908 Thioredoxin-like prote 99.3 3.2E-12 6.9E-17 116.0 8.5 102 201-311 3-108 (288)
117 PRK05014 hscB co-chaperone Hsc 99.3 2.5E-12 5.3E-17 114.4 7.5 64 30-93 1-72 (171)
118 cd02982 PDI_b'_family Protein 99.3 4.8E-12 1E-16 103.3 8.1 87 217-308 12-102 (103)
119 PRK00294 hscB co-chaperone Hsc 99.3 6.5E-12 1.4E-16 111.4 7.6 66 28-93 2-75 (173)
120 TIGR00411 redox_disulf_1 small 99.3 1.8E-11 4E-16 95.4 9.3 79 220-308 2-81 (82)
121 cd02988 Phd_like_VIAF Phosduci 99.3 1.3E-11 2.7E-16 112.2 9.3 96 201-307 84-190 (192)
122 PRK03578 hscB co-chaperone Hsc 99.3 1.1E-11 2.3E-16 110.6 7.8 66 28-93 4-77 (176)
123 TIGR01295 PedC_BrcD bacterioci 99.3 3.2E-11 6.9E-16 101.7 9.9 96 201-306 8-121 (122)
124 PTZ00062 glutaredoxin; Provisi 99.2 4.4E-10 9.6E-15 102.6 15.2 159 205-385 5-173 (204)
125 cd02952 TRP14_like Human TRX-r 99.2 9.4E-11 2E-15 97.7 9.5 73 205-279 8-97 (119)
126 cd02951 SoxW SoxW family; SoxW 99.2 5.5E-11 1.2E-15 100.8 8.4 96 208-310 5-120 (125)
127 PTZ00100 DnaJ chaperone protei 99.2 2.7E-11 5.9E-16 99.0 5.3 53 28-83 63-115 (116)
128 KOG0714 Molecular chaperone (D 99.2 2.4E-11 5.2E-16 118.3 5.4 69 29-97 2-72 (306)
129 KOG0568 Molecular chaperone (D 99.1 1.9E-11 4E-16 109.2 2.2 123 18-141 35-160 (342)
130 PF13848 Thioredoxin_6: Thiore 99.1 6.1E-09 1.3E-13 94.0 18.1 164 235-410 9-183 (184)
131 PRK09430 djlA Dna-J like membr 99.1 9.5E-11 2.1E-15 111.9 5.5 56 29-84 199-262 (267)
132 PHA02624 large T antigen; Prov 99.1 4.1E-10 8.8E-15 116.1 8.7 61 28-91 9-71 (647)
133 TIGR02187 GlrX_arch Glutaredox 99.1 1.4E-09 3E-14 101.2 11.4 95 202-307 118-214 (215)
134 TIGR00412 redox_disulf_2 small 99.0 1.3E-09 2.9E-14 83.8 7.0 71 222-305 3-75 (76)
135 cd02959 ERp19 Endoplasmic reti 99.0 8.6E-10 1.9E-14 92.3 5.4 68 211-280 13-84 (117)
136 PRK01773 hscB co-chaperone Hsc 98.9 2E-09 4.4E-14 95.6 7.7 64 30-93 2-73 (173)
137 KOG1150 Predicted molecular ch 98.9 1.7E-09 3.6E-14 94.9 6.6 76 17-92 40-117 (250)
138 PRK00293 dipZ thiol:disulfide 98.9 5.5E-09 1.2E-13 110.6 10.2 101 201-308 454-569 (571)
139 PRK03147 thiol-disulfide oxido 98.9 1.6E-08 3.5E-13 90.5 10.7 102 200-308 45-171 (173)
140 KOG0913 Thiol-disulfide isomer 98.8 8.1E-10 1.8E-14 99.8 1.1 98 200-307 25-124 (248)
141 PHA02125 thioredoxin-like prot 98.8 4.1E-09 8.8E-14 80.9 4.6 49 221-277 2-51 (75)
142 cd02973 TRX_GRX_like Thioredox 98.8 9.7E-09 2.1E-13 76.8 6.5 56 220-278 2-58 (67)
143 PF13098 Thioredoxin_2: Thiore 98.8 8.9E-09 1.9E-13 85.2 5.2 85 215-305 3-112 (112)
144 TIGR00714 hscB Fe-S protein as 98.8 1.3E-08 2.8E-13 89.3 6.4 53 42-94 3-61 (157)
145 cd02955 SSP411 TRX domain, SSP 98.7 6.8E-08 1.5E-12 81.4 9.0 80 204-290 3-94 (124)
146 PRK14018 trifunctional thiored 98.7 3.8E-08 8.2E-13 101.7 8.9 87 214-306 53-170 (521)
147 TIGR02740 TraF-like TraF-like 98.7 6.3E-08 1.4E-12 92.9 9.8 86 217-309 166-264 (271)
148 TIGR02738 TrbB type-F conjugat 98.7 6.7E-08 1.4E-12 84.6 9.0 82 219-308 52-152 (153)
149 cd03009 TryX_like_TryX_NRX Try 98.7 7.5E-08 1.6E-12 82.1 7.8 71 216-292 17-115 (131)
150 cd02964 TryX_like_family Trypa 98.6 7.1E-08 1.5E-12 82.5 7.3 72 217-294 17-117 (132)
151 cd02966 TlpA_like_family TlpA- 98.6 1E-07 2.2E-12 78.2 8.0 61 217-279 19-104 (116)
152 cd03010 TlpA_like_DsbE TlpA-li 98.6 8.6E-08 1.9E-12 81.3 7.4 77 217-301 25-126 (127)
153 PRK15412 thiol:disulfide inter 98.6 1.2E-07 2.6E-12 86.0 8.8 87 215-310 66-177 (185)
154 COG5269 ZUO1 Ribosome-associat 98.6 7.8E-08 1.7E-12 88.3 7.1 71 25-95 38-114 (379)
155 cd03011 TlpA_like_ScsD_MtbDsbE 98.6 1.8E-07 3.9E-12 78.7 8.6 81 216-303 19-120 (123)
156 PRK11509 hydrogenase-1 operon 98.6 4.8E-07 1E-11 76.4 10.6 102 202-311 20-126 (132)
157 TIGR00385 dsbE periplasmic pro 98.6 2.3E-07 5.1E-12 83.2 9.0 85 216-309 62-171 (173)
158 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 3.8E-07 8.2E-12 72.3 8.6 75 217-302 12-87 (89)
159 KOG0914 Thioredoxin-like prote 98.6 1.2E-07 2.5E-12 84.8 6.2 83 200-282 125-215 (265)
160 cd03008 TryX_like_RdCVF Trypar 98.5 2.4E-07 5.2E-12 80.2 7.8 74 216-295 24-131 (146)
161 PF13905 Thioredoxin_8: Thiore 98.5 1.8E-07 3.9E-12 74.9 6.1 61 217-279 1-89 (95)
162 cd02967 mauD Methylamine utili 98.5 2.1E-07 4.6E-12 77.1 5.9 59 216-276 20-82 (114)
163 cd03065 PDI_b_Calsequestrin_N 98.5 1.2E-06 2.5E-11 73.4 9.6 84 327-412 24-118 (120)
164 PRK13728 conjugal transfer pro 98.5 6.8E-07 1.5E-11 79.8 8.3 82 221-310 73-172 (181)
165 PF00085 Thioredoxin: Thioredo 98.4 2E-06 4.4E-11 69.4 10.1 94 316-411 4-102 (103)
166 cd03003 PDI_a_ERdj5_N PDIa fam 98.4 1.8E-06 4E-11 69.9 9.6 80 328-408 16-100 (101)
167 PLN02919 haloacid dehalogenase 98.3 1.3E-06 2.9E-11 98.7 9.6 89 216-310 419-537 (1057)
168 cd03006 PDI_a_EFP1_N PDIa fami 98.3 3.6E-06 7.9E-11 69.8 8.7 81 327-408 26-112 (113)
169 cd02958 UAS UAS family; UAS is 98.3 4.7E-06 1E-10 69.3 9.4 94 211-309 11-111 (114)
170 cd03007 PDI_a_ERp29_N PDIa fam 98.2 8.2E-06 1.8E-10 67.6 9.5 95 317-411 5-114 (116)
171 cd03012 TlpA_like_DipZ_like Tl 98.2 5.4E-06 1.2E-10 70.2 8.6 62 216-279 22-112 (126)
172 cd02965 HyaE HyaE family; HyaE 98.2 1.3E-05 2.8E-10 65.8 9.8 100 301-405 2-108 (111)
173 PLN02399 phospholipid hydroper 98.2 1.1E-05 2.4E-10 75.5 10.6 88 216-309 98-234 (236)
174 cd03004 PDI_a_ERdj5_C PDIa fam 98.2 9.6E-06 2.1E-10 66.0 8.8 80 328-408 17-103 (104)
175 PTZ00056 glutathione peroxidas 98.1 1.4E-05 3.1E-10 73.2 9.4 42 216-257 38-81 (199)
176 TIGR02661 MauD methylamine deh 98.1 1.8E-05 4E-10 72.0 9.9 82 216-306 73-176 (189)
177 smart00594 UAS UAS domain. 98.1 1.8E-05 4E-10 66.6 9.0 93 211-305 21-121 (122)
178 cd02996 PDI_a_ERp44 PDIa famil 98.1 2.3E-05 5E-10 64.3 9.1 80 328-408 16-107 (108)
179 KOG0910 Thioredoxin-like prote 98.1 1.7E-05 3.7E-10 67.8 8.3 84 327-411 58-146 (150)
180 COG4232 Thiol:disulfide interc 98.1 9.7E-06 2.1E-10 83.5 8.0 102 202-308 457-567 (569)
181 cd03002 PDI_a_MPD1_like PDI fa 98.1 3.1E-05 6.8E-10 63.4 9.7 82 328-409 16-108 (109)
182 TIGR02196 GlrX_YruB Glutaredox 98.1 1E-05 2.2E-10 61.0 6.1 67 221-305 2-73 (74)
183 cd02969 PRX_like1 Peroxiredoxi 98.0 3E-05 6.6E-10 69.2 9.8 89 216-311 24-154 (171)
184 PF13899 Thioredoxin_7: Thiore 98.0 4.3E-06 9.3E-11 65.2 3.7 65 212-279 12-80 (82)
185 cd02956 ybbN ybbN protein fami 98.0 4.2E-05 9.2E-10 61.1 9.2 81 328-409 10-95 (96)
186 KOG0723 Molecular chaperone (D 98.0 1.2E-05 2.6E-10 63.7 5.5 55 27-84 53-107 (112)
187 PLN02412 probable glutathione 98.0 2.7E-05 5.9E-10 69.4 8.6 41 217-257 29-71 (167)
188 cd01659 TRX_superfamily Thiore 98.0 1.5E-05 3.3E-10 57.2 5.8 57 221-280 1-61 (69)
189 PF08534 Redoxin: Redoxin; In 98.0 2E-05 4.3E-10 68.3 7.4 75 216-296 27-135 (146)
190 TIGR02540 gpx7 putative glutat 98.0 4.6E-05 1E-09 66.8 9.6 40 217-256 22-63 (153)
191 TIGR03143 AhpF_homolog putativ 98.0 0.00023 5E-09 75.7 16.4 179 218-408 367-553 (555)
192 cd03001 PDI_a_P5 PDIa family, 98.0 6.5E-05 1.4E-09 60.7 9.5 80 329-409 17-102 (103)
193 PRK11509 hydrogenase-1 operon 98.0 7.3E-05 1.6E-09 63.2 9.8 93 316-411 22-122 (132)
194 PF13848 Thioredoxin_6: Thiore 98.0 3.9E-05 8.4E-10 69.0 8.8 105 199-307 77-184 (184)
195 PF13192 Thioredoxin_3: Thiore 97.9 4E-05 8.7E-10 58.7 7.4 72 222-306 3-76 (76)
196 cd02954 DIM1 Dim1 family; Dim1 97.9 1.7E-05 3.7E-10 65.5 5.5 68 328-396 12-84 (114)
197 cd02999 PDI_a_ERp44_like PDIa 97.9 4.5E-05 9.7E-10 61.8 7.9 80 327-408 15-99 (100)
198 COG0526 TrxA Thiol-disulfide i 97.9 2.7E-05 6E-10 63.2 6.3 61 217-279 32-96 (127)
199 cd00340 GSH_Peroxidase Glutath 97.9 4.8E-05 1.1E-09 66.6 8.2 40 217-257 22-63 (152)
200 PRK10996 thioredoxin 2; Provis 97.9 8.6E-05 1.9E-09 64.0 9.6 83 328-411 50-137 (139)
201 cd02963 TRX_DnaJ TRX domain, D 97.9 6.5E-05 1.4E-09 62.1 8.4 83 328-411 22-110 (111)
202 TIGR01126 pdi_dom protein disu 97.9 0.00011 2.4E-09 59.1 9.2 82 329-411 12-100 (102)
203 cd02981 PDI_b_family Protein D 97.9 0.00014 3E-09 58.3 9.7 93 203-307 3-96 (97)
204 cd02960 AGR Anterior Gradient 97.8 4E-05 8.7E-10 64.8 6.1 66 211-280 17-87 (130)
205 cd02982 PDI_b'_family Protein 97.8 0.00014 2.9E-09 58.9 9.0 80 330-410 12-100 (103)
206 cd02961 PDI_a_family Protein D 97.8 0.00012 2.5E-09 58.3 8.6 78 329-407 14-99 (101)
207 PF02114 Phosducin: Phosducin; 97.8 6.4E-05 1.4E-09 71.7 8.1 99 201-308 127-237 (265)
208 COG3118 Thioredoxin domain-con 97.8 0.00012 2.6E-09 69.5 9.5 86 327-413 40-130 (304)
209 PRK09381 trxA thioredoxin; Pro 97.8 0.00025 5.5E-09 58.1 10.4 83 328-411 19-106 (109)
210 KOG1789 Endocytosis protein RM 97.8 2.5E-05 5.5E-10 83.8 5.3 55 28-84 1279-1337(2235)
211 PTZ00443 Thioredoxin domain-co 97.8 0.00017 3.7E-09 67.1 10.1 82 330-412 52-138 (224)
212 TIGR01626 ytfJ_HI0045 conserve 97.8 0.00014 3E-09 65.4 8.8 78 217-303 59-174 (184)
213 cd03005 PDI_a_ERp46 PDIa famil 97.7 0.00017 3.7E-09 58.1 8.5 76 332-408 18-101 (102)
214 cd02995 PDI_a_PDI_a'_C PDIa fa 97.7 0.00021 4.6E-09 57.7 9.0 80 329-408 17-103 (104)
215 cd02993 PDI_a_APS_reductase PD 97.7 0.00018 3.9E-09 59.2 8.7 81 328-408 19-108 (109)
216 cd02983 P5_C P5 family, C-term 97.7 0.00029 6.4E-09 59.9 10.1 109 200-312 3-118 (130)
217 cd02997 PDI_a_PDIR PDIa family 97.7 0.00022 4.9E-09 57.6 8.8 80 329-408 16-103 (104)
218 cd02998 PDI_a_ERp38 PDIa famil 97.7 0.00039 8.5E-09 56.1 9.4 79 329-408 17-104 (105)
219 cd02994 PDI_a_TMX PDIa family, 97.6 0.00042 9.1E-09 55.9 9.4 76 333-410 19-100 (101)
220 TIGR01068 thioredoxin thioredo 97.6 0.00051 1.1E-08 54.9 9.9 80 330-410 14-98 (101)
221 PF13728 TraF: F plasmid trans 97.6 0.00022 4.8E-09 66.1 8.6 81 217-304 120-213 (215)
222 TIGR02200 GlrX_actino Glutared 97.6 0.00019 4.1E-09 54.6 6.3 50 221-278 2-57 (77)
223 cd02950 TxlA TRX-like protein 97.6 0.00056 1.2E-08 59.2 9.9 85 327-411 17-108 (142)
224 KOG1672 ATP binding protein [P 97.6 0.00018 4E-09 63.7 6.7 79 205-292 73-152 (211)
225 PTZ00256 glutathione peroxidas 97.6 0.00032 6.9E-09 63.5 8.4 41 217-257 40-83 (183)
226 PHA02278 thioredoxin-like prot 97.6 0.00049 1.1E-08 56.1 8.6 78 328-405 12-97 (103)
227 PF07912 ERp29_N: ERp29, N-ter 97.6 0.0015 3.3E-08 53.8 11.3 104 201-310 6-120 (126)
228 cd02985 TRX_CDSP32 TRX family, 97.5 0.00056 1.2E-08 55.6 8.6 79 328-408 13-98 (103)
229 KOG2603 Oligosaccharyltransfer 97.5 0.00055 1.2E-08 65.1 9.5 111 196-309 37-166 (331)
230 cd02949 TRX_NTR TRX domain, no 97.5 0.00057 1.2E-08 54.8 8.3 81 328-409 11-96 (97)
231 TIGR00424 APS_reduc 5'-adenyly 97.5 0.00063 1.4E-08 69.8 10.3 98 315-412 355-462 (463)
232 cd03072 PDI_b'_ERp44 PDIb' fam 97.5 0.00047 1E-08 57.0 7.7 104 201-310 1-109 (111)
233 TIGR02180 GRX_euk Glutaredoxin 97.5 0.00012 2.6E-09 56.8 3.9 54 221-278 1-60 (84)
234 KOG2501 Thioredoxin, nucleored 97.5 0.0003 6.6E-09 60.8 6.5 72 217-294 33-133 (157)
235 cd02962 TMX2 TMX2 family; comp 97.5 0.00051 1.1E-08 60.0 8.0 69 328-397 45-125 (152)
236 PF00578 AhpC-TSA: AhpC/TSA fa 97.4 0.00031 6.7E-09 58.7 5.7 44 216-259 24-70 (124)
237 TIGR02739 TraF type-F conjugat 97.4 0.00072 1.6E-08 64.0 8.7 85 218-309 151-248 (256)
238 PLN02309 5'-adenylylsulfate re 97.3 0.00096 2.1E-08 68.4 9.6 97 316-412 350-456 (457)
239 KOG0907 Thioredoxin [Posttrans 97.3 0.0012 2.7E-08 53.9 8.1 67 328-396 19-90 (106)
240 TIGR03137 AhpC peroxiredoxin. 97.3 0.0015 3.3E-08 59.3 9.5 84 217-306 31-153 (187)
241 KOG3192 Mitochondrial J-type c 97.3 0.00031 6.7E-09 59.8 4.4 66 28-93 6-79 (168)
242 PRK00522 tpx lipid hydroperoxi 97.3 0.0018 3.9E-08 57.7 9.7 52 217-269 44-100 (167)
243 TIGR03143 AhpF_homolog putativ 97.3 0.0016 3.5E-08 69.3 10.8 92 202-305 461-554 (555)
244 cd03000 PDI_a_TMX3 PDIa family 97.3 0.0028 6.1E-08 51.4 9.8 81 329-411 14-102 (104)
245 cd02948 TRX_NDPK TRX domain, T 97.3 0.0018 3.8E-08 52.5 8.5 80 328-410 15-100 (102)
246 cd03015 PRX_Typ2cys Peroxiredo 97.3 0.0021 4.6E-08 57.5 9.8 42 217-258 29-73 (173)
247 cd02984 TRX_PICOT TRX domain, 97.2 0.0018 3.9E-08 51.6 8.3 76 330-407 14-94 (97)
248 cd03067 PDI_b_PDIR_N PDIb fami 97.2 0.0017 3.7E-08 51.4 7.4 95 205-307 8-110 (112)
249 cd02975 PfPDO_like_N Pyrococcu 97.2 0.0035 7.6E-08 51.9 9.8 82 330-413 22-110 (113)
250 cd02953 DsbDgamma DsbD gamma f 97.1 0.0024 5.1E-08 51.8 8.2 82 328-409 9-103 (104)
251 cd03073 PDI_b'_ERp72_ERp57 PDI 97.1 0.0018 3.9E-08 53.5 7.4 100 202-308 2-110 (111)
252 cd02981 PDI_b_family Protein D 97.1 0.0032 6.9E-08 50.3 8.7 74 332-410 20-95 (97)
253 PLN00410 U5 snRNP protein, DIM 97.1 0.0035 7.7E-08 53.9 9.4 65 327-392 20-89 (142)
254 PF06110 DUF953: Eukaryotic pr 97.1 0.0016 3.4E-08 54.3 6.8 71 207-279 6-96 (119)
255 cd02992 PDI_a_QSOX PDIa family 97.1 0.0025 5.4E-08 52.9 8.0 63 329-391 18-89 (114)
256 cd02991 UAS_ETEA UAS family, E 97.1 0.0022 4.7E-08 53.4 7.6 94 211-310 11-114 (116)
257 KOG0911 Glutaredoxin-related p 97.1 0.0031 6.8E-08 57.4 8.9 62 215-279 15-77 (227)
258 KOG0912 Thiol-disulfide isomer 97.1 0.0021 4.7E-08 60.9 8.1 94 330-423 13-117 (375)
259 cd02947 TRX_family TRX family; 97.1 0.0042 9.2E-08 48.1 8.6 76 331-408 11-91 (93)
260 PRK10606 btuE putative glutath 97.0 0.0019 4.2E-08 58.2 7.3 80 216-310 24-116 (183)
261 cd02989 Phd_like_TxnDC9 Phosdu 97.0 0.0035 7.5E-08 51.9 8.3 64 329-394 21-89 (113)
262 PRK15317 alkyl hydroperoxide r 97.0 0.0042 9.1E-08 65.6 11.0 96 202-309 101-198 (517)
263 cd02983 P5_C P5 family, C-term 97.0 0.0054 1.2E-07 52.2 9.3 80 330-410 20-112 (130)
264 cd02957 Phd_like Phosducin (Ph 97.0 0.0025 5.5E-08 52.6 7.1 64 330-396 24-92 (113)
265 PF14595 Thioredoxin_9: Thiore 97.0 0.0015 3.2E-08 55.5 5.7 87 203-296 27-117 (129)
266 PRK13703 conjugal pilus assemb 97.0 0.0029 6.2E-08 59.6 7.8 84 218-308 144-240 (248)
267 cd02986 DLP Dim1 family, Dim1- 96.9 0.0036 7.8E-08 51.5 7.1 63 328-391 12-79 (114)
268 cd03017 PRX_BCP Peroxiredoxin 96.9 0.0044 9.5E-08 53.0 7.9 43 217-259 23-68 (140)
269 cd02976 NrdH NrdH-redoxin (Nrd 96.9 0.0024 5.3E-08 47.5 5.4 51 221-279 2-57 (73)
270 cd02970 PRX_like2 Peroxiredoxi 96.9 0.0019 4.2E-08 55.7 5.5 46 217-262 24-71 (149)
271 PRK11200 grxA glutaredoxin 1; 96.8 0.0021 4.6E-08 50.2 4.6 75 220-309 2-83 (85)
272 KOG4277 Uncharacterized conser 96.8 0.0022 4.7E-08 60.5 5.3 95 328-424 41-143 (468)
273 cd03014 PRX_Atyp2cys Peroxired 96.7 0.0037 8E-08 53.8 6.3 54 217-271 26-84 (143)
274 PRK10382 alkyl hydroperoxide r 96.7 0.016 3.5E-07 52.5 10.6 96 201-306 21-153 (187)
275 cd03066 PDI_b_Calsequestrin_mi 96.7 0.011 2.4E-07 47.9 8.5 78 328-410 18-98 (102)
276 PF03190 Thioredox_DsbH: Prote 96.7 0.0029 6.2E-08 55.5 5.0 84 201-291 22-117 (163)
277 TIGR00411 redox_disulf_1 small 96.6 0.022 4.8E-07 43.6 9.4 73 333-410 2-79 (82)
278 cd03069 PDI_b_ERp57 PDIb famil 96.6 0.012 2.7E-07 47.8 8.2 76 329-410 18-101 (104)
279 KOG3425 Uncharacterized conser 96.6 0.0068 1.5E-07 49.6 6.3 71 207-279 13-102 (128)
280 PRK09437 bcp thioredoxin-depen 96.6 0.012 2.5E-07 51.4 8.6 43 217-259 30-75 (154)
281 PRK15000 peroxidase; Provision 96.6 0.014 3E-07 53.6 9.4 42 217-258 34-78 (200)
282 PTZ00051 thioredoxin; Provisio 96.5 0.012 2.7E-07 46.8 7.7 69 328-398 16-89 (98)
283 cd02951 SoxW SoxW family; SoxW 96.5 0.027 5.9E-07 47.2 9.8 84 328-411 11-117 (125)
284 PRK13190 putative peroxiredoxi 96.4 0.018 4E-07 52.8 9.1 83 220-308 31-153 (202)
285 TIGR03140 AhpF alkyl hydropero 96.4 0.022 4.9E-07 60.1 10.8 95 202-308 102-198 (515)
286 cd03018 PRX_AhpE_like Peroxire 96.4 0.0069 1.5E-07 52.4 5.7 42 218-259 29-73 (149)
287 COG2143 Thioredoxin-related pr 96.3 0.028 6.1E-07 48.3 8.8 86 211-302 36-142 (182)
288 cd02968 SCO SCO (an acronym fo 96.3 0.0072 1.6E-07 51.7 5.5 43 216-258 21-69 (142)
289 PRK15317 alkyl hydroperoxide r 96.1 0.18 3.9E-06 53.3 15.6 168 218-409 19-194 (517)
290 cd03016 PRX_1cys Peroxiredoxin 96.1 0.039 8.5E-07 50.7 9.3 40 219-258 28-69 (203)
291 cd03419 GRX_GRXh_1_2_like Glut 96.1 0.007 1.5E-07 46.5 3.7 52 221-278 2-59 (82)
292 PTZ00137 2-Cys peroxiredoxin; 96.1 0.045 9.7E-07 52.2 9.8 84 217-306 98-222 (261)
293 cd02971 PRX_family Peroxiredox 96.0 0.016 3.6E-07 49.3 6.3 45 216-260 21-68 (140)
294 cd02987 Phd_like_Phd Phosducin 96.0 0.026 5.6E-07 50.6 7.5 60 331-393 84-148 (175)
295 COG1076 DjlA DnaJ-domain-conta 96.0 0.0047 1E-07 55.3 2.5 53 30-82 113-173 (174)
296 PF00462 Glutaredoxin: Glutare 96.0 0.012 2.6E-07 42.5 4.3 50 221-278 1-55 (60)
297 KOG3414 Component of the U4/U6 95.9 0.038 8.2E-07 45.6 7.4 71 207-279 12-84 (142)
298 cd03072 PDI_b'_ERp44 PDIb' fam 95.9 0.051 1.1E-06 44.8 8.3 80 330-411 16-106 (111)
299 PTZ00253 tryparedoxin peroxida 95.9 0.056 1.2E-06 49.5 9.4 42 217-258 36-80 (199)
300 PRK10877 protein disulfide iso 95.8 0.043 9.4E-07 51.5 8.3 80 216-308 106-230 (232)
301 cd02066 GRX_family Glutaredoxi 95.7 0.014 3.1E-07 43.0 4.0 50 221-278 2-56 (72)
302 TIGR02183 GRXA Glutaredoxin, G 95.7 0.014 3E-07 45.8 4.0 75 220-309 1-82 (86)
303 TIGR03140 AhpF alkyl hydropero 95.7 0.41 8.8E-06 50.6 16.1 163 219-406 21-192 (515)
304 PRK13599 putative peroxiredoxi 95.6 0.047 1E-06 50.7 7.8 83 219-307 31-154 (215)
305 PF07449 HyaE: Hydrogenase-1 e 95.6 0.033 7.1E-07 45.4 5.8 75 201-279 11-89 (107)
306 PRK13189 peroxiredoxin; Provis 95.5 0.078 1.7E-06 49.4 9.1 40 219-258 38-79 (222)
307 cd03073 PDI_b'_ERp72_ERp57 PDI 95.5 0.057 1.2E-06 44.5 7.2 66 343-411 36-109 (111)
308 cd03068 PDI_b_ERp72 PDIb famil 95.5 0.076 1.6E-06 43.5 7.8 56 330-390 20-76 (107)
309 cd03020 DsbA_DsbC_DsbG DsbA fa 95.4 0.055 1.2E-06 49.4 7.6 79 217-305 77-197 (197)
310 PF11009 DUF2847: Protein of u 95.3 0.054 1.2E-06 43.9 6.0 81 205-291 6-92 (105)
311 TIGR02190 GlrX-dom Glutaredoxi 95.2 0.027 5.8E-07 43.3 4.1 51 220-278 9-63 (79)
312 cd02988 Phd_like_VIAF Phosduci 95.2 0.13 2.9E-06 46.7 9.1 59 330-393 102-165 (192)
313 cd03069 PDI_b_ERp57 PDIb famil 95.1 0.24 5.3E-06 40.1 9.7 93 205-308 7-103 (104)
314 cd02952 TRP14_like Human TRX-r 95.1 0.083 1.8E-06 44.1 7.0 61 329-389 20-99 (119)
315 PF13462 Thioredoxin_4: Thiore 95.1 0.12 2.7E-06 44.9 8.4 41 217-257 12-55 (162)
316 cd02972 DsbA_family DsbA famil 95.0 0.048 1E-06 42.7 5.2 57 221-279 1-90 (98)
317 PRK03147 thiol-disulfide oxido 95.0 0.26 5.5E-06 43.6 10.4 83 330-412 61-171 (173)
318 KOG0921 Dosage compensation co 95.0 0.075 1.6E-06 57.6 7.6 9 85-93 1165-1173(1282)
319 cd03066 PDI_b_Calsequestrin_mi 94.9 0.42 9.2E-06 38.5 10.5 96 201-308 2-100 (102)
320 TIGR02194 GlrX_NrdH Glutaredox 94.9 0.039 8.5E-07 41.4 4.1 50 221-278 1-54 (72)
321 PRK13191 putative peroxiredoxi 94.9 0.16 3.5E-06 47.1 8.9 40 219-258 36-77 (215)
322 PF05768 DUF836: Glutaredoxin- 94.8 0.055 1.2E-06 41.8 4.8 79 221-306 2-81 (81)
323 PF13098 Thioredoxin_2: Thiore 94.8 0.061 1.3E-06 43.9 5.4 80 328-407 3-110 (112)
324 TIGR01295 PedC_BrcD bacterioci 94.8 0.24 5.2E-06 41.5 9.0 79 328-408 21-119 (122)
325 KOG0908 Thioredoxin-like prote 94.7 0.12 2.6E-06 48.0 7.3 86 325-413 16-106 (288)
326 KOG0431 Auxilin-like protein a 94.7 0.062 1.4E-06 55.3 6.1 32 35-66 393-424 (453)
327 PF07912 ERp29_N: ERp29, N-ter 94.6 0.28 6.2E-06 40.6 8.7 95 317-411 8-117 (126)
328 cd03027 GRX_DEP Glutaredoxin ( 94.6 0.068 1.5E-06 40.2 4.8 50 221-278 3-57 (73)
329 COG1076 DjlA DnaJ-domain-conta 94.5 0.034 7.4E-07 49.8 3.3 63 31-93 2-72 (174)
330 cd03418 GRX_GRXb_1_3_like Glut 94.5 0.073 1.6E-06 40.0 4.7 50 221-278 2-57 (75)
331 TIGR02181 GRX_bact Glutaredoxi 94.4 0.052 1.1E-06 41.4 3.7 50 221-278 1-55 (79)
332 cd02959 ERp19 Endoplasmic reti 94.1 0.2 4.3E-06 41.7 7.0 66 327-392 16-88 (117)
333 PF01216 Calsequestrin: Calseq 94.0 0.29 6.3E-06 47.8 8.5 71 345-416 76-147 (383)
334 PF02966 DIM1: Mitosis protein 93.9 0.2 4.4E-06 42.0 6.5 71 206-279 8-81 (133)
335 KOG2640 Thioredoxin [Function 93.9 0.029 6.3E-07 53.7 1.8 86 217-310 76-163 (319)
336 PRK11657 dsbG disulfide isomer 93.8 0.4 8.7E-06 45.6 9.3 40 261-306 210-249 (251)
337 TIGR02189 GlrX-like_plant Glut 93.7 0.07 1.5E-06 43.0 3.4 51 220-278 9-67 (99)
338 cd03068 PDI_b_ERp72 PDIb famil 93.6 1 2.2E-05 36.7 10.3 94 205-307 7-106 (107)
339 PRK10329 glutaredoxin-like pro 93.6 0.14 2.9E-06 39.6 4.7 69 221-307 3-75 (81)
340 PTZ00062 glutaredoxin; Provisi 93.4 0.6 1.3E-05 42.8 9.4 83 331-424 18-114 (204)
341 PHA03050 glutaredoxin; Provisi 93.3 0.11 2.3E-06 42.6 4.0 63 209-278 5-75 (108)
342 KOG3170 Conserved phosducin-li 93.2 0.16 3.6E-06 45.5 5.1 102 201-309 93-201 (240)
343 cd02958 UAS UAS family; UAS is 93.1 0.93 2E-05 37.2 9.3 84 327-410 14-108 (114)
344 PF03656 Pam16: Pam16; InterP 93.0 0.18 4E-06 42.4 4.8 54 31-87 59-112 (127)
345 PRK00293 dipZ thiol:disulfide 92.8 0.52 1.1E-05 50.4 9.3 83 328-411 472-568 (571)
346 cd03023 DsbA_Com1_like DsbA fa 92.6 0.19 4E-06 43.2 4.7 38 217-255 5-43 (154)
347 COG0695 GrxC Glutaredoxin and 92.5 0.2 4.3E-06 38.6 4.1 50 221-278 3-59 (80)
348 TIGR02740 TraF-like TraF-like 92.5 1.1 2.4E-05 43.1 10.2 81 330-412 166-263 (271)
349 cd03029 GRX_hybridPRX5 Glutare 92.3 0.22 4.8E-06 37.2 4.2 50 221-278 3-56 (72)
350 cd02973 TRX_GRX_like Thioredox 92.0 0.93 2E-05 33.1 7.2 52 333-386 2-58 (67)
351 PF13905 Thioredoxin_8: Thiore 91.6 0.97 2.1E-05 35.4 7.4 58 332-392 36-94 (95)
352 cd02955 SSP411 TRX domain, SSP 91.3 1.7 3.7E-05 36.5 8.9 88 326-414 11-120 (124)
353 cd03019 DsbA_DsbA DsbA family, 91.2 0.29 6.3E-06 43.4 4.4 40 216-255 14-54 (178)
354 smart00594 UAS UAS domain. 90.9 1.2 2.7E-05 37.1 7.7 80 328-407 25-119 (122)
355 KOG3171 Conserved phosducin-li 90.8 0.79 1.7E-05 41.7 6.6 98 201-307 140-249 (273)
356 PRK10638 glutaredoxin 3; Provi 90.8 0.4 8.7E-06 37.0 4.3 50 221-278 4-58 (83)
357 TIGR00412 redox_disulf_2 small 90.7 2.2 4.7E-05 32.3 8.2 39 344-386 17-55 (76)
358 cd03009 TryX_like_TryX_NRX Try 90.3 1.7 3.7E-05 36.4 8.1 64 330-393 18-112 (131)
359 TIGR00365 monothiol glutaredox 90.0 0.56 1.2E-05 37.5 4.6 44 227-278 25-73 (97)
360 PF07449 HyaE: Hydrogenase-1 e 89.7 0.89 1.9E-05 37.1 5.5 74 315-391 13-93 (107)
361 cd03028 GRX_PICOT_like Glutare 89.7 0.51 1.1E-05 37.1 4.1 44 227-278 21-69 (90)
362 PRK14018 trifunctional thiored 89.4 2.9 6.3E-05 43.9 10.5 86 329-414 55-174 (521)
363 cd03026 AhpF_NTD_C TRX-GRX-lik 89.0 3.3 7.1E-05 32.5 8.2 53 332-386 14-71 (89)
364 KOG0914 Thioredoxin-like prote 88.8 0.66 1.4E-05 42.3 4.5 67 325-392 139-217 (265)
365 cd03011 TlpA_like_ScsD_MtbDsbE 88.7 2.2 4.8E-05 35.1 7.6 61 342-406 59-119 (123)
366 cd02964 TryX_like_family Trypa 87.3 3.5 7.6E-05 34.6 8.1 23 371-393 90-112 (132)
367 PRK10824 glutaredoxin-4; Provi 87.1 0.86 1.9E-05 37.7 4.0 44 227-278 28-76 (115)
368 PF11833 DUF3353: Protein of u 86.5 1.5 3.1E-05 40.0 5.4 40 39-85 1-40 (194)
369 PLN02919 haloacid dehalogenase 86.4 5.3 0.00011 46.1 11.2 85 329-413 419-536 (1057)
370 TIGR02738 TrbB type-F conjugat 85.7 15 0.00034 31.9 11.4 79 330-410 50-150 (153)
371 cd03067 PDI_b_PDIR_N PDIb fami 85.6 3.5 7.5E-05 33.1 6.3 81 329-410 18-109 (112)
372 PRK10954 periplasmic protein d 85.1 0.96 2.1E-05 41.6 3.7 39 218-256 38-80 (207)
373 KOG0921 Dosage compensation co 84.4 3.3 7.2E-05 45.5 7.6 23 36-58 1088-1112(1282)
374 KOG1731 FAD-dependent sulfhydr 84.3 3.5 7.7E-05 43.1 7.6 49 342-390 74-126 (606)
375 cd02966 TlpA_like_family TlpA- 84.2 6.4 0.00014 31.0 7.9 23 370-392 87-109 (116)
376 KOG2603 Oligosaccharyltransfer 84.2 23 0.00049 34.4 12.3 80 344-424 83-170 (331)
377 COG3019 Predicted metal-bindin 83.7 5.2 0.00011 34.0 7.0 76 219-308 26-103 (149)
378 KOG1752 Glutaredoxin and relat 83.5 2.3 4.9E-05 34.6 4.7 54 220-279 15-74 (104)
379 PRK12759 bifunctional gluaredo 82.9 1.4 3.1E-05 45.0 4.2 50 221-278 4-66 (410)
380 PF02114 Phosducin: Phosducin; 82.2 2.3 4.9E-05 40.7 5.0 57 332-391 148-209 (265)
381 KOG3414 Component of the U4/U6 82.1 3 6.5E-05 34.8 4.9 70 321-391 14-88 (142)
382 cd03010 TlpA_like_DsbE TlpA-li 80.6 12 0.00025 31.0 8.4 35 368-402 88-123 (127)
383 PF13728 TraF: F plasmid trans 78.7 13 0.00029 34.3 8.7 60 344-405 139-210 (215)
384 PHA02125 thioredoxin-like prot 78.7 10 0.00022 28.4 6.7 26 359-385 26-51 (75)
385 TIGR00385 dsbE periplasmic pro 77.4 20 0.00043 31.7 9.3 44 368-411 125-169 (173)
386 PF13192 Thioredoxin_3: Thiore 76.4 23 0.00049 26.6 8.1 38 368-409 37-75 (76)
387 cd03008 TryX_like_RdCVF Trypar 76.0 15 0.00032 31.8 7.7 25 370-394 102-126 (146)
388 PF13446 RPT: A repeated domai 74.0 6.2 0.00013 28.5 4.2 27 30-56 5-31 (62)
389 KOG0724 Zuotin and related mol 73.3 3.2 6.9E-05 41.2 3.3 53 42-94 4-61 (335)
390 PRK13728 conjugal transfer pro 72.2 42 0.00091 30.2 9.8 70 344-415 88-173 (181)
391 TIGR02739 TraF type-F conjugat 70.6 35 0.00075 32.5 9.4 71 344-419 169-251 (256)
392 COG1225 Bcp Peroxiredoxin [Pos 70.3 12 0.00026 32.7 5.8 53 217-269 30-88 (157)
393 cd02969 PRX_like1 Peroxiredoxi 70.2 38 0.00082 29.7 9.2 49 342-394 75-123 (171)
394 cd02991 UAS_ETEA UAS family, E 69.6 23 0.00051 29.2 7.2 52 356-407 51-107 (116)
395 cd02967 mauD Methylamine utili 69.4 18 0.00038 29.1 6.5 56 330-385 21-83 (114)
396 COG2143 Thioredoxin-related pr 68.5 10 0.00023 33.0 4.8 42 368-409 103-145 (182)
397 COG4232 Thiol:disulfide interc 68.3 11 0.00024 39.7 6.0 84 327-410 471-565 (569)
398 COG5552 Uncharacterized conser 67.3 23 0.0005 26.5 5.8 61 30-94 3-63 (88)
399 cd03013 PRX5_like Peroxiredoxi 64.8 21 0.00046 31.0 6.4 51 218-268 31-88 (155)
400 cd02978 KaiB_like KaiB-like fa 64.2 14 0.0003 27.8 4.2 56 221-278 4-61 (72)
401 PF11009 DUF2847: Protein of u 63.9 14 0.0003 30.1 4.5 60 332-391 20-89 (105)
402 PF06110 DUF953: Eukaryotic pr 63.3 52 0.0011 27.4 8.0 60 329-389 18-98 (119)
403 KOG2792 Putative cytochrome C 61.4 41 0.00089 31.9 7.7 93 217-311 139-277 (280)
404 TIGR02654 circ_KaiB circadian 60.9 15 0.00033 28.7 4.0 57 220-278 5-63 (87)
405 PRK13703 conjugal pilus assemb 59.6 73 0.0016 30.2 9.2 60 344-405 162-233 (248)
406 COG4907 Predicted membrane pro 58.9 18 0.00039 36.8 5.2 22 68-89 521-542 (595)
407 TIGR02742 TrbC_Ftype type-F co 58.6 15 0.00033 31.1 4.1 35 368-402 59-104 (130)
408 PRK09301 circadian clock prote 58.1 17 0.00037 29.3 4.1 58 219-278 7-66 (103)
409 PF00837 T4_deiodinase: Iodoth 55.7 7.5 0.00016 36.3 1.9 60 197-256 80-142 (237)
410 PRK15412 thiol:disulfide inter 54.4 95 0.0021 27.7 8.9 45 368-412 130-175 (185)
411 TIGR02661 MauD methylamine deh 54.0 1E+02 0.0022 27.6 9.1 25 369-393 135-159 (189)
412 PF14687 DUF4460: Domain of un 53.9 27 0.00059 28.7 4.7 44 40-83 4-52 (112)
413 KOG3171 Conserved phosducin-li 53.7 75 0.0016 29.3 7.8 42 344-388 178-219 (273)
414 cd03031 GRX_GRX_like Glutaredo 53.6 25 0.00054 30.5 4.7 50 221-278 2-66 (147)
415 COG0526 TrxA Thiol-disulfide i 52.7 97 0.0021 23.6 8.0 63 330-392 32-101 (127)
416 PF09673 TrbC_Ftype: Type-F co 52.6 38 0.00082 27.8 5.5 45 342-389 36-80 (113)
417 PF10041 DUF2277: Uncharacteri 51.7 65 0.0014 24.3 5.9 45 30-74 3-47 (78)
418 PF13743 Thioredoxin_5: Thiore 46.6 12 0.00026 33.4 1.7 33 223-255 2-35 (176)
419 cd02977 ArsC_family Arsenate R 46.1 12 0.00026 30.1 1.5 33 221-259 1-34 (105)
420 PF06953 ArsD: Arsenical resis 44.4 1.2E+02 0.0026 25.4 7.2 68 231-307 17-100 (123)
421 cd03012 TlpA_like_DipZ_like Tl 43.4 1.1E+02 0.0023 25.1 7.0 47 343-393 72-118 (126)
422 PF13743 Thioredoxin_5: Thiore 43.4 17 0.00038 32.3 2.3 22 368-389 135-156 (176)
423 PRK13730 conjugal transfer pil 43.3 39 0.00085 30.8 4.4 35 368-403 150-184 (212)
424 PF07709 SRR: Seven Residue Re 42.1 17 0.00037 18.0 1.1 13 71-83 2-14 (14)
425 KOG1672 ATP binding protein [P 42.1 40 0.00086 30.5 4.2 73 321-395 75-152 (211)
426 COG1331 Highly conserved prote 41.5 63 0.0014 34.9 6.3 78 199-279 26-115 (667)
427 COG1999 Uncharacterized protei 40.8 96 0.0021 28.4 6.8 53 216-268 66-127 (207)
428 cd03060 GST_N_Omega_like GST_N 40.5 65 0.0014 23.4 4.7 51 222-278 2-54 (71)
429 cd02974 AhpF_NTD_N Alkyl hydro 40.0 1.9E+02 0.004 22.9 7.9 72 218-307 20-92 (94)
430 PF13417 GST_N_3: Glutathione 39.4 1E+02 0.0022 22.7 5.7 71 223-311 1-73 (75)
431 COG4371 Predicted membrane pro 38.5 62 0.0013 30.4 4.9 12 235-246 161-172 (334)
432 TIGR01626 ytfJ_HI0045 conserve 38.1 1.4E+02 0.0031 26.8 7.3 70 346-416 112-183 (184)
433 cd01659 TRX_superfamily Thiore 38.0 1.2E+02 0.0025 19.9 6.3 37 354-390 25-63 (69)
434 cd03070 PDI_b_ERp44 PDIb famil 36.4 2.1E+02 0.0046 22.5 7.1 65 332-402 19-86 (91)
435 COG4545 Glutaredoxin-related p 36.4 69 0.0015 24.3 4.0 49 222-278 5-70 (85)
436 TIGR01617 arsC_related transcr 36.3 30 0.00064 28.5 2.4 34 222-260 2-35 (117)
437 KOG2501 Thioredoxin, nucleored 36.2 1.3E+02 0.0028 26.3 6.4 26 368-393 103-128 (157)
438 cd03025 DsbA_FrnE_like DsbA fa 35.2 46 0.001 29.5 3.7 27 221-247 3-30 (193)
439 cd02960 AGR Anterior Gradient 34.7 2.7E+02 0.0058 23.5 7.9 14 379-392 78-91 (130)
440 cd03074 PDI_b'_Calsequestrin_C 34.6 2.6E+02 0.0056 22.9 9.1 107 201-309 3-120 (120)
441 PF12725 DUF3810: Protein of u 34.1 78 0.0017 31.2 5.3 60 25-84 77-148 (318)
442 PRK01655 spxA transcriptional 33.0 35 0.00077 28.8 2.4 34 221-259 2-35 (131)
443 CHL00185 ycf59 magnesium-proto 32.6 89 0.0019 30.7 5.2 58 26-83 246-305 (351)
444 cd03035 ArsC_Yffb Arsenate Red 31.6 29 0.00064 28.0 1.6 34 221-259 1-34 (105)
445 PF09673 TrbC_Ftype: Type-F co 31.1 2.4E+02 0.0053 23.0 7.0 43 235-281 38-80 (113)
446 cd03023 DsbA_Com1_like DsbA fa 30.2 63 0.0014 27.1 3.6 36 259-305 118-153 (154)
447 cd03036 ArsC_like Arsenate Red 30.0 33 0.00071 28.0 1.7 33 222-259 2-34 (111)
448 KOG0913 Thiol-disulfide isomer 30.0 50 0.0011 30.8 2.9 55 358-416 75-129 (248)
449 cd03041 GST_N_2GST_N GST_N fam 29.5 2.3E+02 0.005 20.8 6.2 69 222-308 3-76 (77)
450 TIGR02029 AcsF magnesium-proto 29.3 1.3E+02 0.0028 29.4 5.6 57 26-82 240-298 (337)
451 PHA03075 glutaredoxin-like pro 29.3 42 0.00091 27.7 2.1 33 219-255 3-36 (123)
452 PF00255 GSHPx: Glutathione pe 29.1 1.2E+02 0.0027 24.7 4.8 44 216-259 20-64 (108)
453 cd00570 GST_N_family Glutathio 29.0 91 0.002 21.5 3.8 51 222-278 2-55 (71)
454 KOG3170 Conserved phosducin-li 28.2 1.2E+02 0.0027 27.6 5.0 73 314-391 94-172 (240)
455 PRK11657 dsbG disulfide isomer 28.1 83 0.0018 29.8 4.3 41 368-408 207-247 (251)
456 cd01047 ACSF Aerobic Cyclase S 28.1 1.5E+02 0.0033 28.8 5.9 57 26-82 230-288 (323)
457 TIGR02743 TraW type-F conjugat 27.4 61 0.0013 29.7 3.0 33 347-385 158-190 (202)
458 PF02630 SCO1-SenC: SCO1/SenC; 27.3 80 0.0017 27.9 3.8 42 216-257 51-97 (174)
459 PF13462 Thioredoxin_4: Thiore 27.2 1E+02 0.0023 26.1 4.5 36 370-410 126-161 (162)
460 PF08534 Redoxin: Redoxin; In 26.9 2.1E+02 0.0045 23.9 6.3 29 368-396 93-130 (146)
461 PRK13738 conjugal transfer pil 26.8 68 0.0015 29.5 3.3 33 347-385 156-188 (209)
462 PF04592 SelP_N: Selenoprotein 26.2 48 0.001 30.9 2.2 42 216-257 25-71 (238)
463 cd03037 GST_N_GRX2 GST_N famil 26.2 93 0.002 22.4 3.4 18 222-239 2-20 (71)
464 PF01323 DSBA: DSBA-like thior 26.0 95 0.0021 27.4 4.1 35 221-255 2-38 (193)
465 cd03045 GST_N_Delta_Epsilon GS 26.0 1.5E+02 0.0033 21.3 4.6 51 222-278 2-57 (74)
466 PRK10877 protein disulfide iso 25.9 80 0.0017 29.5 3.7 39 368-410 190-228 (232)
467 PRK13654 magnesium-protoporphy 25.8 1.1E+02 0.0025 30.0 4.7 58 26-83 250-309 (355)
468 PF06764 DUF1223: Protein of u 25.7 2.1E+02 0.0046 26.2 6.3 54 223-278 4-76 (202)
469 cd03051 GST_N_GTT2_like GST_N 25.4 1.5E+02 0.0033 21.1 4.5 51 222-278 2-57 (74)
470 PRK12559 transcriptional regul 25.3 55 0.0012 27.6 2.3 18 221-238 2-19 (131)
471 cd03019 DsbA_DsbA DsbA family, 25.0 1E+02 0.0023 26.7 4.2 18 369-386 132-149 (178)
472 TIGR02742 TrbC_Ftype type-F co 25.0 2E+02 0.0043 24.3 5.6 26 254-281 55-80 (130)
473 cd04516 TBP_eukaryotes eukaryo 24.8 4.4E+02 0.0096 23.4 8.0 25 395-419 150-174 (174)
474 PRK14125 cell division suppres 24.7 2.3E+02 0.0049 22.9 5.6 50 2-51 4-54 (103)
475 PRK10954 periplasmic protein d 24.4 1.1E+02 0.0023 27.9 4.2 18 369-386 156-173 (207)
476 KOG3442 Uncharacterized conser 23.8 1E+02 0.0022 25.7 3.4 34 32-65 61-94 (132)
477 PF07739 TipAS: TipAS antibiot 23.5 2.2E+02 0.0047 22.9 5.5 52 37-96 51-104 (118)
478 COG1651 DsbG Protein-disulfide 23.3 88 0.0019 29.1 3.5 39 368-411 203-241 (244)
479 KOG3499 60S ribosomal protein 23.0 53 0.0012 23.6 1.4 11 434-444 31-42 (69)
480 KOG2507 Ubiquitin regulatory p 23.0 2.9E+02 0.0064 28.2 7.0 87 215-307 16-109 (506)
481 PF01323 DSBA: DSBA-like thior 22.9 1E+02 0.0022 27.1 3.8 37 259-305 156-192 (193)
482 cd03040 GST_N_mPGES2 GST_N fam 22.9 1.1E+02 0.0024 22.4 3.4 73 221-309 2-76 (77)
483 cd03032 ArsC_Spx Arsenate Redu 22.8 78 0.0017 25.8 2.7 33 221-259 2-35 (115)
484 PLN00062 TATA-box-binding prot 22.5 3.7E+02 0.0079 24.1 7.1 28 395-422 150-177 (179)
485 PLN02508 magnesium-protoporphy 22.2 1.7E+02 0.0037 28.7 5.1 57 26-82 246-304 (357)
486 PF00578 AhpC-TSA: AhpC/TSA fa 21.9 2.8E+02 0.0061 22.1 6.0 26 368-393 90-121 (124)
487 PRK10382 alkyl hydroperoxide r 21.8 5.8E+02 0.013 22.8 9.6 44 367-410 99-153 (187)
488 PF07689 KaiB: KaiB domain; I 21.3 15 0.00032 28.4 -1.8 42 235-278 15-57 (82)
489 KOG3973 Uncharacterized conser 21.1 3.1E+02 0.0067 27.2 6.5 10 54-63 297-306 (465)
490 cd03017 PRX_BCP Peroxiredoxin 20.9 4.7E+02 0.01 21.3 7.3 48 343-394 67-123 (140)
491 KOG1651 Glutathione peroxidase 20.5 4.8E+02 0.01 23.1 7.0 81 216-311 33-127 (171)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-27 Score=231.76 Aligned_cols=71 Identities=52% Similarity=0.914 Sum_probs=68.3
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCCC
Q 013319 28 KTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKNYDLYGDEK 98 (445)
Q Consensus 28 ~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~ 98 (445)
..+|||+||||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||+||+||++|++||+||+..
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~ 73 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAG 73 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccc
Confidence 4689999999999999999999999999999999999 8899999999999999999999999999999873
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.9e-25 Score=210.77 Aligned_cols=73 Identities=58% Similarity=0.931 Sum_probs=69.0
Q ss_pred CCCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCCCC
Q 013319 27 AKTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKNYDLYGDEKG 99 (445)
Q Consensus 27 ~~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 99 (445)
...+|||+||||+++|+.+|||+||||||+++|||||+ ++.|.+.|++|+.||+||+||++|+.||.+|++..
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL 86 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGL 86 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhh
Confidence 45799999999999999999999999999999999999 58899999999999999999999999999997743
No 3
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.8e-24 Score=216.94 Aligned_cols=217 Identities=15% Similarity=0.167 Sum_probs=166.2
Q ss_pred CCCcccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC---ccEEEEEeCccchhhHhHhCCccCC
Q 013319 197 SSGNIRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG---ALKVGSINCETEASLCKELGVHRPR 272 (445)
Q Consensus 197 ~~~~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~---~v~~~~Vdc~~~~~lc~~~~I~~~~ 272 (445)
.+..|.+|+.+||+..| ..+..+||.||||||+||++ +|.|+++|..++. .+.+++|||+++..+|.+|+|++|
T Consensus 23 ~~~~Vl~Lt~dnf~~~i-~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gy- 100 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETI-NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGY- 100 (493)
T ss_pred cccceEEEecccHHHHh-ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCC-
Confidence 45679999999997765 55667899999999999999 9999999999986 799999999999999999999999
Q ss_pred CcEEEEeccCCCCCCC-eeeecCcccHHHHHHHHHhhCCCCceecc-ccccchhhhccCCCCEEEEEecCCCChHHHHHH
Q 013319 273 SPRIFAYSYKAGDKGS-LVEYNEHLVAKNLKSFCRDHLPRFSKRIS-LNRIEFTFDAKARLPSVLLLSTKKETPIIWRVL 350 (445)
Q Consensus 273 ~Pti~~f~~~~~~~g~-~~~y~g~~~~~~l~~fi~~~lp~~~~~i~-~~~~~~~~~~~~~~~~vvlF~~~~~~~~~~~~l 350 (445)
|||.+| ++|. +..|+|+++++.|+.|+.+...+.+..+. .++...+... .+..++.+|.+.......+..+
T Consensus 101 -PTlkiF-----rnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~-~~~~vig~F~d~~~~~~~~~~~ 173 (493)
T KOG0190|consen 101 -PTLKIF-----RNGRSAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSK-KDVVVIGFFKDLESLAESFFDA 173 (493)
T ss_pred -CeEEEE-----ecCCcceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccC-CceEEEEEecccccchHHHHHH
Confidence 999999 5666 58999999999999999987665444443 3333333333 4555666776665555888899
Q ss_pred HHHhhccceEEEEeecCCChHHHHHcCCCC--CCeEEEEccCC-cccccccccChhhHHHHHHHHHhhhhhhhhcccccc
Q 013319 351 SGMYHERLNFYDTEVHDVSDPAVKKLGVDA--LPAIVGWLSNG-EKDVLKTGISVKDQKSSIHELSKLLDGLKKRTKRQL 427 (445)
Q Consensus 351 A~~~~~~~~f~~~~v~~~~~~l~~~f~V~~--~Ptlv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~~~~ 427 (445)
|..+++.+.|+.. ++.+++++++++. .|.++++..-. ....|.++... ..|.+||..|+.++
T Consensus 174 a~~l~~d~~F~~t----s~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~-----------~~l~~Fi~~~~~pl 238 (493)
T KOG0190|consen 174 ASKLRDDYKFAHT----SDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTP-----------ELLKKFIQENSLPL 238 (493)
T ss_pred HHhccccceeecc----CcHhHHhhccCCCCCcceEEeccccccchhhcccccCH-----------HHHHHHHHHhcccc
Confidence 9999999999633 6799999999874 44477666633 33345455555 22566777777777
Q ss_pred cCCCccchhc
Q 013319 428 PHGLANHIVI 437 (445)
Q Consensus 428 ~~~l~~~~~~ 437 (445)
+..++.....
T Consensus 239 v~~ft~~~~~ 248 (493)
T KOG0190|consen 239 VTEFTVANNA 248 (493)
T ss_pred cceecccccc
Confidence 7777665433
No 4
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.87 E-value=6.8e-22 Score=182.11 Aligned_cols=192 Identities=17% Similarity=0.289 Sum_probs=139.5
Q ss_pred ccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC---ccEEEEEeCccchhhHhHhCCccCCCcEE
Q 013319 201 IRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG---ALKVGSINCETEASLCKELGVHRPRSPRI 276 (445)
Q Consensus 201 V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~---~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti 276 (445)
|.+|+ +.|.+ . +.+..|+|.||||||+||++ .|+|.++.-+++. .|++|++||+..+.++.+++|++| |||
T Consensus 30 VeDLd-dkFkd-n-kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGY--PTI 104 (468)
T KOG4277|consen 30 VEDLD-DKFKD-N-KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGY--PTI 104 (468)
T ss_pred hhhhh-HHhhh-c-ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCC--ceE
Confidence 67775 44643 2 34458999999999999999 9999999999986 699999999999999999999999 999
Q ss_pred EEeccCCCCCCCeeeecCcccHHHHHHHHHhhCCCCceeccccccchhhhccCCCCEEEEEecCCC-ChHHHHHHHHHhh
Q 013319 277 FAYSYKAGDKGSLVEYNEHLVAKNLKSFCRDHLPRFSKRISLNRIEFTFDAKARLPSVLLLSTKKE-TPIIWRVLSGMYH 355 (445)
Q Consensus 277 ~~f~~~~~~~g~~~~y~g~~~~~~l~~fi~~~lp~~~~~i~~~~~~~~~~~~~~~~~vvlF~~~~~-~~~~~~~lA~~~~ 355 (445)
++| +++..+.|+|.++.++|++|+.+.-...+.++..+++.+..-...+.|..|+|..... ....|..+|...
T Consensus 105 k~~-----kgd~a~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~PL~d~fidAASe~- 178 (468)
T KOG4277|consen 105 KFF-----KGDHAIDYRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGTGEGPLFDAFIDAASEK- 178 (468)
T ss_pred EEe-----cCCeeeecCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeCCCCcHHHHHHHHhhhh-
Confidence 999 6678899999999999999999988777777777666655445677899999875433 233444444432
Q ss_pred ccceEEEEeecCCChHHHHHcC-CCCCCeEEEEccCCcccccccccChhhHHHHH
Q 013319 356 ERLNFYDTEVHDVSDPAVKKLG-VDALPAIVGWLSNGEKDVLKTGISVKDQKSSI 409 (445)
Q Consensus 356 ~~~~f~~~~v~~~~~~l~~~f~-V~~~Ptlv~~~~~~~~~~~~~~~~~~~~~~~~ 409 (445)
|.++.....+++++-.++ .+..|.+.||+.+. ..++.++ +.+++.+++
T Consensus 179 ----~~~a~FfSaseeVaPe~~~~kempaV~VFKDet-f~i~de~-dd~dLseWi 227 (468)
T KOG4277|consen 179 ----FSVARFFSASEEVAPEENDAKEMPAVAVFKDET-FEIEDEG-DDEDLSEWI 227 (468)
T ss_pred ----eeeeeeeccccccCCcccchhhccceEEEccce-eEEEecC-chhHHHHHH
Confidence 222222333455555544 44479999777553 3333333 234454443
No 5
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.85 E-value=2.5e-21 Score=160.58 Aligned_cols=104 Identities=18% Similarity=0.270 Sum_probs=91.9
Q ss_pred CCCCcccccChhhHHHH--hhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhH-hHhCCccC
Q 013319 196 SSSGNIRALNLQVFKKE--IVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLC-KELGVHRP 271 (445)
Q Consensus 196 ~~~~~V~~Lt~~~f~~~--v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc-~~~~I~~~ 271 (445)
+..+.|++|+.+||++. +.+++.++||.||||||++|+. .|.|+++|+++++.+.|++|||+++..+| ++|+|.++
T Consensus 6 ~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~ 85 (113)
T cd03006 6 SQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYF 85 (113)
T ss_pred CCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCccc
Confidence 34566999999999886 3577889999999999999999 99999999999988999999999999999 58999999
Q ss_pred CCcEEEEeccCCCCCCCeeeecCcccHHHHHHHH
Q 013319 272 RSPRIFAYSYKAGDKGSLVEYNEHLVAKNLKSFC 305 (445)
Q Consensus 272 ~~Pti~~f~~~~~~~g~~~~y~g~~~~~~l~~fi 305 (445)
|||++|..+ ..+..|.|.++.+.|+.|+
T Consensus 86 --PTl~lf~~g----~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 86 --PVIHLYYRS----RGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred --CEEEEEECC----ccceEEeCCCCHHHHHhhC
Confidence 999999432 2467899999999999874
No 6
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.2e-21 Score=185.76 Aligned_cols=68 Identities=59% Similarity=0.992 Sum_probs=64.9
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 28 KTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 28 ~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
....+|+||||+++||.+|||+|||+|+++||||||++ +.++|++|.+||++|+||++|+.||+||++
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~ 69 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEE 69 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhh
Confidence 35789999999999999999999999999999999987 789999999999999999999999999976
No 7
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=4.2e-20 Score=186.59 Aligned_cols=207 Identities=16% Similarity=0.304 Sum_probs=160.4
Q ss_pred ccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEe
Q 013319 201 IRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAY 279 (445)
Q Consensus 201 V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f 279 (445)
+..++..+|...+...+.+|+|+||+|||+||+. .|+|+++++.+++.+.++.|||+.+..+|++|+|.++ |||.+|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gf--Ptl~~f 108 (383)
T KOG0191|consen 31 VSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGF--PTLKVF 108 (383)
T ss_pred hhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccC--cEEEEE
Confidence 4555566777778888889999999999999999 9999999999999999999999999999999999999 999999
Q ss_pred ccCCCCCCCeeeecCcccHHHHHHHHHhhCCCCceec------cccccchhh-hccCCCCEEEEEecCC-----CChHHH
Q 013319 280 SYKAGDKGSLVEYNEHLVAKNLKSFCRDHLPRFSKRI------SLNRIEFTF-DAKARLPSVLLLSTKK-----ETPIIW 347 (445)
Q Consensus 280 ~~~~~~~g~~~~y~g~~~~~~l~~fi~~~lp~~~~~i------~~~~~~~~~-~~~~~~~~vvlF~~~~-----~~~~~~ 347 (445)
..+ ..++.|.+.++.+.+.+|+.+.+.+.+... .+...++.. ....+.+++|.|.... ...+.|
T Consensus 109 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~ 184 (383)
T KOG0191|consen 109 RPG----KKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEW 184 (383)
T ss_pred cCC----CceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHH
Confidence 332 367899999999999999998776543222 222222221 2345667888885542 236899
Q ss_pred HHHHHHhh--ccceEEEEeecC-CChHHHHHcCCCCCCeEEEEccCCc-ccccccccChhhHHHHHHHHHhh
Q 013319 348 RVLSGMYH--ERLNFYDTEVHD-VSDPAVKKLGVDALPAIVGWLSNGE-KDVLKTGISVKDQKSSIHELSKL 415 (445)
Q Consensus 348 ~~lA~~~~--~~~~f~~~~v~~-~~~~l~~~f~V~~~Ptlv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 415 (445)
..+|..+. ..+.++. +++ ....++.+++|..+||+++|.++.+ ...+.+.++.+.+++++.+....
T Consensus 185 ~~~a~~~~~~~~v~~~~--~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 185 EKLAKLLKSKENVELGK--IDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred HHHHHHhccCcceEEEe--eccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcCC
Confidence 99999886 3444433 333 4688999999999999998888777 66777777888887777766544
No 8
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.83 E-value=8.2e-20 Score=189.10 Aligned_cols=214 Identities=15% Similarity=0.209 Sum_probs=158.1
Q ss_pred cccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC---ccEEEEEeCccchhhHhHhCCccCCCcE
Q 013319 200 NIRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG---ALKVGSINCETEASLCKELGVHRPRSPR 275 (445)
Q Consensus 200 ~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~---~v~~~~Vdc~~~~~lc~~~~I~~~~~Pt 275 (445)
.|.+|+.++|+..+ +.+++++|.||||||++|+. .|.|+++|+.+.. .+.++.|||+++..+|++++|.++ ||
T Consensus 2 ~v~~l~~~~~~~~i-~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~--Pt 78 (462)
T TIGR01130 2 DVLVLTKDNFDDFI-KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGY--PT 78 (462)
T ss_pred CceECCHHHHHHHH-hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccc--cE
Confidence 48899999998765 55668999999999999999 9999999999875 499999999999999999999999 99
Q ss_pred EEEeccCCCCCCC--eeeecCcccHHHHHHHHHhhCCCCceecc-ccccchhhhccCCCCEEEEEecC--CCChHHHHHH
Q 013319 276 IFAYSYKAGDKGS--LVEYNEHLVAKNLKSFCRDHLPRFSKRIS-LNRIEFTFDAKARLPSVLLLSTK--KETPIIWRVL 350 (445)
Q Consensus 276 i~~f~~~~~~~g~--~~~y~g~~~~~~l~~fi~~~lp~~~~~i~-~~~~~~~~~~~~~~~~vvlF~~~--~~~~~~~~~l 350 (445)
+++|. +|. ...|.|.++.++|.+|+.+.+++.+..++ .++++.+... ..+.+|+|... ......|.++
T Consensus 79 ~~~~~-----~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~--~~~~vi~~~~~~~~~~~~~~~~~ 151 (462)
T TIGR01130 79 LKIFR-----NGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLAD--DDVVVIGFFKDLDSELNDTFLSV 151 (462)
T ss_pred EEEEe-----CCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhc--CCcEEEEEECCCCcHHHHHHHHH
Confidence 99993 344 47899999999999999999887655554 3334433332 34555555443 3357889999
Q ss_pred HHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCccc---ccccccChhhHHHHHHHHHhhhhhhhhcccccc
Q 013319 351 SGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKD---VLKTGISVKDQKSSIHELSKLLDGLKKRTKRQL 427 (445)
Q Consensus 351 A~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~~~~ 427 (445)
|..++....+... ..+..+.+++++.. |+++++....... .|.+..+. -...|..|++.+.+++
T Consensus 152 a~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~fi~~~~~p~ 218 (462)
T TIGR01130 152 AEKLRDVYFFFAH---SSDVAAFAKLGAFP-DSVVLFKPKDEDEKFSKVDGEMDT---------DVSDLEKFIRAESLPL 218 (462)
T ss_pred HHHhhhccceEEe---cCCHHHHhhcCCCC-CcEEEecccccccccccccCcccC---------CHHHHHHHHHHcCCCc
Confidence 9999887764322 14567888888764 6777676643222 45444322 0134566777787777
Q ss_pred cCCCccchh
Q 013319 428 PHGLANHIV 436 (445)
Q Consensus 428 ~~~l~~~~~ 436 (445)
++.++.+..
T Consensus 219 v~~~~~~~~ 227 (462)
T TIGR01130 219 VGEFTQETA 227 (462)
T ss_pred eEeeCCcch
Confidence 777776644
No 9
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=4.6e-20 Score=184.20 Aligned_cols=69 Identities=51% Similarity=0.850 Sum_probs=66.4
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
..|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||++|+||++|+.||+||+.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~ 71 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHA 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence 479999999999999999999999999999999998888999999999999999999999999999975
No 10
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=5.1e-20 Score=184.04 Aligned_cols=69 Identities=48% Similarity=0.889 Sum_probs=65.5
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
..|||+||||+++|+.+|||+|||+|+++||||+++ ++.++++|++|++||++|+||.+|+.||+||+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKA 72 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCch
Confidence 479999999999999999999999999999999997 467899999999999999999999999999876
No 11
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.82 E-value=3.5e-20 Score=151.35 Aligned_cols=99 Identities=24% Similarity=0.542 Sum_probs=88.4
Q ss_pred cccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEE
Q 013319 200 NIRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 200 ~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~ 278 (445)
.|.+|+.++|++.+ ..+.+|+|.||+|||++|+. .|.|+++|+++++.+.|++|||++++.+|++++|+++ ||+++
T Consensus 2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~--Pt~~~ 78 (101)
T cd03003 2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSY--PSLYV 78 (101)
T ss_pred CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCcc--CEEEE
Confidence 47899999998876 55689999999999999999 9999999999998899999999999999999999999 99999
Q ss_pred eccCCCCCCCeeeecCcccHHHHHHHH
Q 013319 279 YSYKAGDKGSLVEYNEHLVAKNLKSFC 305 (445)
Q Consensus 279 f~~~~~~~g~~~~y~g~~~~~~l~~fi 305 (445)
|+.+. .+..|.|.++.++|.+|+
T Consensus 79 ~~~g~----~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 79 FPSGM----NPEKYYGDRSKESLVKFA 101 (101)
T ss_pred EcCCC----CcccCCCCCCHHHHHhhC
Confidence 95331 355699999999998874
No 12
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.82 E-value=6.2e-20 Score=150.67 Aligned_cols=101 Identities=24% Similarity=0.452 Sum_probs=91.4
Q ss_pred cccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEE
Q 013319 200 NIRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 200 ~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~ 278 (445)
.|.+|+.++|++.+.+++++++|.|||+||++|+. .|.|+++++++.+.+.+++|||++++.+|++++|+++ ||+++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~--Pt~~~ 79 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAY--PTIRL 79 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcc--cEEEE
Confidence 47899999999988888889999999999999999 9999999999988899999999999999999999999 99999
Q ss_pred eccCCCCCCCeeeecCccc-HHHHHHHH
Q 013319 279 YSYKAGDKGSLVEYNEHLV-AKNLKSFC 305 (445)
Q Consensus 279 f~~~~~~~g~~~~y~g~~~-~~~l~~fi 305 (445)
|+.+ ...+..|.|..+ .++|.+||
T Consensus 80 ~~~g---~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 80 YPGN---ASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EcCC---CCCceEccCCCCCHHHHHhhC
Confidence 9543 135677999887 89999885
No 13
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.80 E-value=2.6e-19 Score=149.55 Aligned_cols=107 Identities=20% Similarity=0.414 Sum_probs=95.9
Q ss_pred CCCCcccccChhhHHHHhhcCCcEEEEEEECCCCcc--CC--C-hhHHHHHHHHh--cCccEEEEEeCccchhhHhHhCC
Q 013319 196 SSSGNIRALNLQVFKKEIVEKGMTWLLFFYSPSSNR--DG--Y-ESVIEEVANSM--EGALKVGSINCETEASLCKELGV 268 (445)
Q Consensus 196 ~~~~~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~--C~--~-~p~~~~~a~~l--~~~v~~~~Vdc~~~~~lc~~~~I 268 (445)
+....|.+||++||++.|.+++.++||.|+++||++ |+ . +|+++++|.++ .+.+.|++|||++++.+|++|+|
T Consensus 6 ~~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I 85 (120)
T cd03065 6 DGKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL 85 (120)
T ss_pred CCCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCC
Confidence 345569999999999999998889999999999965 99 7 99999999998 77899999999999999999999
Q ss_pred ccCCCcEEEEeccCCCCCCCeeeecCcccHHHHHHHHHhhC
Q 013319 269 HRPRSPRIFAYSYKAGDKGSLVEYNEHLVAKNLKSFCRDHL 309 (445)
Q Consensus 269 ~~~~~Pti~~f~~~~~~~g~~~~y~g~~~~~~l~~fi~~~l 309 (445)
+++ |||++| .+|+.+.|.|.++.+.|++||.+.+
T Consensus 86 ~~i--PTl~lf-----k~G~~v~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 86 DEE--DSIYVF-----KDDEVIEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccc--cEEEEE-----ECCEEEEeeCCCCHHHHHHHHHHHh
Confidence 999 999999 5677778999999999999998653
No 14
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1e-19 Score=182.87 Aligned_cols=69 Identities=46% Similarity=0.697 Sum_probs=65.5
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
..|||+||||+++|+.+|||+|||+||++||||+++ ++.+.++|++|++||++|+||++|+.||+||+.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~ 77 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL 77 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence 579999999999999999999999999999999997 567899999999999999999999999999864
No 15
>PTZ00102 disulphide isomerase; Provisional
Probab=99.80 E-value=1.1e-18 Score=181.68 Aligned_cols=206 Identities=16% Similarity=0.158 Sum_probs=146.3
Q ss_pred CcccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC---ccEEEEEeCccchhhHhHhCCccCCCc
Q 013319 199 GNIRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG---ALKVGSINCETEASLCKELGVHRPRSP 274 (445)
Q Consensus 199 ~~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~---~v~~~~Vdc~~~~~lc~~~~I~~~~~P 274 (445)
..|..|+.++|+..+ ++++.+||.||||||++|+. .|.|+++|+.+.. .+.++.|||+.+..+|++++|.++ |
T Consensus 32 ~~v~~l~~~~f~~~i-~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~--P 108 (477)
T PTZ00102 32 EHVTVLTDSTFDKFI-TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGY--P 108 (477)
T ss_pred CCcEEcchhhHHHHH-hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcc--c
Confidence 568999999998765 55668999999999999999 9999999998863 599999999999999999999999 9
Q ss_pred EEEEeccCCCCCCCeeeecCcccHHHHHHHHHhhCCCCceeccccccchhhhccCCCCEEEEEecC-CCChHHHHHHHHH
Q 013319 275 RIFAYSYKAGDKGSLVEYNEHLVAKNLKSFCRDHLPRFSKRISLNRIEFTFDAKARLPSVLLLSTK-KETPIIWRVLSGM 353 (445)
Q Consensus 275 ti~~f~~~~~~~g~~~~y~g~~~~~~l~~fi~~~lp~~~~~i~~~~~~~~~~~~~~~~~vvlF~~~-~~~~~~~~~lA~~ 353 (445)
|+++|. +|..+.|.|.++.+.|++|+.+.+.+.+..++................++.|... ......|.++|..
T Consensus 109 t~~~~~-----~g~~~~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~ 183 (477)
T PTZ00102 109 TIKFFN-----KGNPVNYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADK 183 (477)
T ss_pred EEEEEE-----CCceEEecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHh
Confidence 999993 4455699999999999999999887766666543322122122222222234332 2346688899999
Q ss_pred hhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccChhhHHHHHHHHHhhhhhhhhcccccccCCCcc
Q 013319 354 YHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGISVKDQKSSIHELSKLLDGLKKRTKRQLPHGLAN 433 (445)
Q Consensus 354 ~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~l~~ 433 (445)
+++...|+.. .. . ..|.+++++.+.....+.++.+.+++ ..|++.+.++++..++.
T Consensus 184 ~~~~~~F~~~--~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~fI~~~~~P~~~~~~~ 239 (477)
T PTZ00102 184 HREHAKFFVK--KH--E---------GKNKIYVLHKDEEGVELFMGKTKEEL-----------EEFVSTESFPLFAEINA 239 (477)
T ss_pred ccccceEEEE--cC--C---------CCCcEEEEecCCCCcccCCCCCHHHH-----------HHHHHHcCCCceeecCc
Confidence 9888777433 11 1 24677877775544444345555455 44444555565555555
Q ss_pred chh
Q 013319 434 HIV 436 (445)
Q Consensus 434 ~~~ 436 (445)
.+.
T Consensus 240 ~~~ 242 (477)
T PTZ00102 240 ENY 242 (477)
T ss_pred cch
Confidence 443
No 16
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=2.2e-19 Score=179.48 Aligned_cols=69 Identities=51% Similarity=0.876 Sum_probs=66.1
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
..|||+||||+++|+.+|||+|||+|+++||||+++.+.++++|++|++||++|+||.+|+.||+||+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~ 71 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT 71 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence 479999999999999999999999999999999998778899999999999999999999999999875
No 17
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.79 E-value=4.9e-19 Score=146.40 Aligned_cols=100 Identities=16% Similarity=0.285 Sum_probs=86.9
Q ss_pred cccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC------ccEEEEEeCccchhhHhHhCCccCC
Q 013319 200 NIRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG------ALKVGSINCETEASLCKELGVHRPR 272 (445)
Q Consensus 200 ~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~------~v~~~~Vdc~~~~~lc~~~~I~~~~ 272 (445)
.|++|++++|++.+ +.++++||.||||||++|+. .|.|+++|+.++. .+.+++|||+++..+|++++|+++
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~- 79 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKY- 79 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcC-
Confidence 58899999998755 66779999999999999999 9999999998742 489999999999999999999999
Q ss_pred CcEEEEeccCCCCCCCeeeecCcccHHHHHHHH
Q 013319 273 SPRIFAYSYKAGDKGSLVEYNEHLVAKNLKSFC 305 (445)
Q Consensus 273 ~Pti~~f~~~~~~~g~~~~y~g~~~~~~l~~fi 305 (445)
||+++|+.+. .....|.|.++.++|++||
T Consensus 80 -Ptl~~~~~g~---~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 80 -PTLKLFRNGM---MMKREYRGQRSVEALAEFV 108 (108)
T ss_pred -CEEEEEeCCc---CcceecCCCCCHHHHHhhC
Confidence 9999994332 1246799999999999985
No 18
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.78 E-value=6e-19 Score=143.95 Aligned_cols=101 Identities=26% Similarity=0.500 Sum_probs=92.5
Q ss_pred ccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEe
Q 013319 201 IRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAY 279 (445)
Q Consensus 201 V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f 279 (445)
|..||.++|++.+.+++.++||.||++||++|+. .|.|+++++++.+.+.++.|||++++.+|++++|..+ ||+++|
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~--Pt~~~~ 78 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSV--PTIIFF 78 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSS--SEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCC--CEEEEE
Confidence 5789999999988876889999999999999999 9999999999998999999999999999999999999 999999
Q ss_pred ccCCCCCCC-eeeecCcccHHHHHHHHHhh
Q 013319 280 SYKAGDKGS-LVEYNEHLVAKNLKSFCRDH 308 (445)
Q Consensus 280 ~~~~~~~g~-~~~y~g~~~~~~l~~fi~~~ 308 (445)
. +|. ...|.|.++.++|.+||+++
T Consensus 79 ~-----~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 K-----NGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp E-----TTEEEEEEESSSSHHHHHHHHHHH
T ss_pred E-----CCcEEEEEECCCCHHHHHHHHHcC
Confidence 3 443 44799999999999999875
No 19
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=1.6e-18 Score=174.22 Aligned_cols=69 Identities=52% Similarity=0.940 Sum_probs=65.4
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
..|||+||||+++|+.+|||+|||+|+++||||+++ .+.++++|++|++||++|+||.+|+.||.||+.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 73 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHA 73 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccc
Confidence 479999999999999999999999999999999998 467889999999999999999999999999975
No 20
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=5e-19 Score=177.54 Aligned_cols=69 Identities=51% Similarity=0.855 Sum_probs=66.4
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
..|||+||||+++|+.+|||+|||+|+++||||+++++.++++|++|++||++|+||.+|+.||+||+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 71 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAA 71 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence 479999999999999999999999999999999998888899999999999999999999999999976
No 21
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=8.4e-19 Score=175.43 Aligned_cols=223 Identities=14% Similarity=0.227 Sum_probs=142.5
Q ss_pred CCCCCCCCCCcccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC---ccEEEEEeCcc--chhhH
Q 013319 190 SQSQSRSSSGNIRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG---ALKVGSINCET--EASLC 263 (445)
Q Consensus 190 ~~~~~~~~~~~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~---~v~~~~Vdc~~--~~~lc 263 (445)
.+...|+.+++|++|+.++|+..|..+...+||+||++||+||++ +|.|+++|+.+.. .|.+++|||.+ |..+|
T Consensus 30 ~~ptLy~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lC 109 (606)
T KOG1731|consen 30 SNPTLYSPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLC 109 (606)
T ss_pred CCCcccCCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhH
Confidence 344568888999999999999999888889999999999999999 9999999999986 89999999987 46899
Q ss_pred hHhCCccCCCcEEEEeccCCCCCCCeeeecCcccHHHHHHHHHhhCC------------CCceeccccccchhhh--ccC
Q 013319 264 KELGVHRPRSPRIFAYSYKAGDKGSLVEYNEHLVAKNLKSFCRDHLP------------RFSKRISLNRIEFTFD--AKA 329 (445)
Q Consensus 264 ~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g~~~~~~l~~fi~~~lp------------~~~~~i~~~~~~~~~~--~~~ 329 (445)
++++|+.| |+|++|+.+.........+.|.....++.+.+.+.+. ++..+.+.+.+....+ ...
T Consensus 110 Ref~V~~~--Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~ 187 (606)
T KOG1731|consen 110 REFSVSGY--PTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTT 187 (606)
T ss_pred hhcCCCCC--ceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccc
Confidence 99999999 9999997765432223445555555666666654332 1111112222222211 222
Q ss_pred CCCEEEEEecCCCChHHHHHHHHHhh-ccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccChhhHHHH
Q 013319 330 RLPSVLLLSTKKETPIIWRVLSGMYH-ERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGISVKDQKSS 408 (445)
Q Consensus 330 ~~~~vvlF~~~~~~~~~~~~lA~~~~-~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~~~~~~~ 408 (445)
...++|+|..... ..-|..+-..+. +.+.+..+ .+..+-.+.+ ++++.+|..+++++++...++..+.+.+
T Consensus 188 ~~yvAiv~e~~~s-~lg~~~~l~~l~~~~v~vr~~-~d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~----- 259 (606)
T KOG1731|consen 188 ANYVAIVFETEPS-DLGWANLLNDLPSKQVGVRAR-LDTQNFPLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRS----- 259 (606)
T ss_pred cceeEEEEecCCc-ccHHHHHHhhccCCCcceEEE-ecchhccccc-cCCCCchhhhhhcCCcccccccccccHH-----
Confidence 3345666654333 233333333331 22322212 1113344555 8888899988777666555554444442
Q ss_pred HHHHHhhhhhhhhccc
Q 013319 409 IHELSKLLDGLKKRTK 424 (445)
Q Consensus 409 ~~~~~~~l~~~~~~n~ 424 (445)
.+.+-|++++.++.
T Consensus 260 --~y~~~I~~~lg~~~ 273 (606)
T KOG1731|consen 260 --AYVKKIDDLLGDKN 273 (606)
T ss_pred --HHHHHHHHHhcCcc
Confidence 34445555554443
No 22
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=8.7e-19 Score=148.33 Aligned_cols=104 Identities=13% Similarity=0.302 Sum_probs=96.0
Q ss_pred cccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEE
Q 013319 200 NIRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 200 ~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~ 278 (445)
.+..++..+|++.|++++.|+||.|||+||++|+. .|..++++.++.+.+++++||.+++.+++.+|+|..+ ||+++
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~av--Ptvlv 121 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAV--PTVLV 121 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeee--eEEEE
Confidence 36677899999999999999999999999999999 9999999999999999999999999999999999999 99999
Q ss_pred eccCCCCCCCee-eecCcccHHHHHHHHHhhCC
Q 013319 279 YSYKAGDKGSLV-EYNEHLVAKNLKSFCRDHLP 310 (445)
Q Consensus 279 f~~~~~~~g~~~-~y~g~~~~~~l~~fi~~~lp 310 (445)
| .+|+.. .+.|..+.+.|.++|++.++
T Consensus 122 f-----knGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 122 F-----KNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred E-----ECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 9 456555 58898899999999998765
No 23
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.78 E-value=1.2e-18 Score=142.17 Aligned_cols=98 Identities=21% Similarity=0.340 Sum_probs=86.8
Q ss_pred cccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCccchhhHhHhCCccCCCcEEE
Q 013319 200 NIRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCETEASLCKELGVHRPRSPRIF 277 (445)
Q Consensus 200 ~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~ 277 (445)
.|.+|+.++|++.+ +. . |||.||||||++|+. .|.|+++++.+++ .+.+++|||++++.+|++++|.++ ||++
T Consensus 2 ~v~~l~~~~f~~~~-~~-~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~--Pt~~ 76 (101)
T cd02994 2 NVVELTDSNWTLVL-EG-E-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTAL--PTIY 76 (101)
T ss_pred ceEEcChhhHHHHh-CC-C-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCccc--CEEE
Confidence 48899999998754 33 3 899999999999999 9999999998875 699999999999999999999999 9999
Q ss_pred EeccCCCCCCCeeeecCcccHHHHHHHHHh
Q 013319 278 AYSYKAGDKGSLVEYNEHLVAKNLKSFCRD 307 (445)
Q Consensus 278 ~f~~~~~~~g~~~~y~g~~~~~~l~~fi~~ 307 (445)
+| .+|....|.|.++.++|.+|+.+
T Consensus 77 ~~-----~~g~~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 77 HA-----KDGVFRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred Ee-----CCCCEEEecCCCCHHHHHHHHhC
Confidence 98 45566789999999999999863
No 24
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=1.1e-18 Score=175.09 Aligned_cols=69 Identities=58% Similarity=0.939 Sum_probs=66.2
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
..|||+||||+++|+.+|||+|||+|+++||||+|+++.++++|++|++||++|+||.+|+.||.||+.
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~ 70 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA 70 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence 479999999999999999999999999999999998888899999999999999999999999999875
No 25
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5.8e-19 Score=176.84 Aligned_cols=68 Identities=54% Similarity=0.817 Sum_probs=65.4
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 30 VDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 30 ~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
.|||+||||+++|+.+|||+|||+|+++||||+++++.++++|++|++||++|+||.+|+.||+||++
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 69999999999999999999999999999999999888899999999999999999999999999864
No 26
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=6.6e-19 Score=176.45 Aligned_cols=69 Identities=54% Similarity=0.918 Sum_probs=66.2
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
..|||+||||+++|+.+|||+|||+|+++||||+++++.++++|++|++||++|+||.+|+.||+||+.
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 71 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHA 71 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence 479999999999999999999999999999999998888999999999999999999999999999875
No 27
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.77 E-value=1.5e-18 Score=143.50 Aligned_cols=103 Identities=22% Similarity=0.420 Sum_probs=91.6
Q ss_pred ccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCcc--chhhHhHhCCccCCCcEEE
Q 013319 201 IRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCET--EASLCKELGVHRPRSPRIF 277 (445)
Q Consensus 201 V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~--~~~lc~~~~I~~~~~Pti~ 277 (445)
|.+|+.++|++.|.+.+.++||.||++||++|+. .|.|+++++.+.+.+.++.|||+. +..+|++++|.++ ||++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~--Pt~~ 79 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGF--PTLK 79 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcC--CEEE
Confidence 7889999999988888889999999999999999 999999999998889999999999 8899999999999 9999
Q ss_pred EeccCCCC-CCCeeeecCcccHHHHHHHH
Q 013319 278 AYSYKAGD-KGSLVEYNEHLVAKNLKSFC 305 (445)
Q Consensus 278 ~f~~~~~~-~g~~~~y~g~~~~~~l~~fi 305 (445)
+|+.+... ......|.|.++.++|.+||
T Consensus 80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 80 VFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEeCCCcccccccccccCccCHHHHHHHh
Confidence 99544211 11356799999999999997
No 28
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=1.1e-18 Score=169.04 Aligned_cols=69 Identities=59% Similarity=0.923 Sum_probs=66.4
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
..|||+||||+++||.+|||+|||+|+++||||+++++.++++|++|++||++|+||.+|+.||+||+.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 479999999999999999999999999999999998888999999999999999999999999999876
No 29
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=3.2e-18 Score=171.28 Aligned_cols=69 Identities=52% Similarity=0.925 Sum_probs=66.1
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
..|||+||||+++|+.+|||+|||+||++||||+++++.++++|++|++||++|+||.+|+.||+||+.
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHA 72 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence 479999999999999999999999999999999998888899999999999999999999999999875
No 30
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=6.8e-19 Score=175.78 Aligned_cols=69 Identities=49% Similarity=0.887 Sum_probs=65.5
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
..|||+||||+++||.+|||+|||+||++||||+++ ++.++++|++|++||++|+||.+|+.||+||+.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~ 71 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK 71 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence 379999999999999999999999999999999998 567899999999999999999999999999875
No 31
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=3.4e-18 Score=171.00 Aligned_cols=69 Identities=52% Similarity=0.910 Sum_probs=65.2
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC-hHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN-KAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
..|||+||||+++|+.+|||+|||+|+++||||+++. +.++++|++|++||++|+||.+|+.||+||+.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~ 72 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA 72 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence 4799999999999999999999999999999999974 67889999999999999999999999999875
No 32
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=3.7e-18 Score=171.11 Aligned_cols=69 Identities=57% Similarity=0.976 Sum_probs=65.2
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
..|||+||||+++|+.+|||+|||+|+++||||+++ ++.++++|++|++||++|+||.+|+.||+||+.
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 72 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA 72 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence 479999999999999999999999999999999997 467889999999999999999999999999865
No 33
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.76 E-value=5.4e-18 Score=157.01 Aligned_cols=194 Identities=13% Similarity=0.219 Sum_probs=137.9
Q ss_pred cChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhc-----CccEEEEEeCccchhhHhHhCCccCCCcEEE
Q 013319 204 LNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSME-----GALKVGSINCETEASLCKELGVHRPRSPRIF 277 (445)
Q Consensus 204 Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~-----~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~ 277 (445)
|+.+|++. |+++..+++|.|||+||+.++. .|+|+++|..++ +.+.+|.|||+++..++.+|.|..| ||+.
T Consensus 1 lt~~N~~~-il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~Ky--PTlK 77 (375)
T KOG0912|consen 1 LTSENIDS-ILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKY--PTLK 77 (375)
T ss_pred CccccHHH-hhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccC--ceee
Confidence 35567754 6788899999999999999999 999999999987 3789999999999999999999999 9999
Q ss_pred EeccCCCCCCCee--eecCcccHHHHHHHHHhhCCCCceeccccccchhhhc-c-CCCCEEEEEecCCC-ChHHHHHHHH
Q 013319 278 AYSYKAGDKGSLV--EYNEHLVAKNLKSFCRDHLPRFSKRISLNRIEFTFDA-K-ARLPSVLLLSTKKE-TPIIWRVLSG 352 (445)
Q Consensus 278 ~f~~~~~~~g~~~--~y~g~~~~~~l~~fi~~~lp~~~~~i~~~~~~~~~~~-~-~~~~~vvlF~~~~~-~~~~~~~lA~ 352 (445)
+| .+|... .|+|.|+.++|.+||++.+...+... .+++.+... . ....++.+|.++.+ ....++.+|.
T Consensus 78 vf-----rnG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef--~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~kva~ 150 (375)
T KOG0912|consen 78 VF-----RNGEMMKREYRGQRSVEALIEFIEKQLSDPINEF--ESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRKVAS 150 (375)
T ss_pred ee-----eccchhhhhhccchhHHHHHHHHHHHhccHHHHH--HhHHHHHhhhccccceEEEEeccCCCchHHHHHHHHH
Confidence 99 556444 59999999999999999987543222 222222222 2 23334445554444 4678999999
Q ss_pred HhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCccc--ccccccCh-hhHHHHHHHHH
Q 013319 353 MYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKD--VLKTGISV-KDQKSSIHELS 413 (445)
Q Consensus 353 ~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~ 413 (445)
.+++.+.|.... . ++.+.-.-.+.+ ++++.++.... .|.|..+. ++++.|+.+.-
T Consensus 151 ~lr~dc~f~V~~-g----D~~~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKc 208 (375)
T KOG0912|consen 151 LLRDDCVFLVGF-G----DLLKPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKC 208 (375)
T ss_pred HHhhccEEEeec-c----ccccCCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcc
Confidence 999999885441 1 111111111122 55566644333 68787766 77888877664
No 34
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.2e-18 Score=173.82 Aligned_cols=68 Identities=47% Similarity=0.889 Sum_probs=64.7
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 30 VDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 30 ~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
.|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|..||+||+.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~ 71 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHT 71 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence 69999999999999999999999999999999997 467889999999999999999999999999875
No 35
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2e-18 Score=172.47 Aligned_cols=69 Identities=51% Similarity=0.908 Sum_probs=65.6
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
..|||+||||+++|+.+|||+|||+|+++||||+++ ++.++++|++|++||++|+||.+|+.||+||++
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~ 72 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHE 72 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccc
Confidence 579999999999999999999999999999999998 467889999999999999999999999999975
No 36
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.75 E-value=4.6e-18 Score=138.98 Aligned_cols=101 Identities=25% Similarity=0.424 Sum_probs=91.8
Q ss_pred cccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEE
Q 013319 200 NIRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 200 ~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~ 278 (445)
+|.++++++|++.+.+.+.+++|.||++||++|+. .|.|+++++++.+.+.++.+||+++..+|++++|.++ |++++
T Consensus 1 ~v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~--P~~~~ 78 (103)
T cd03001 1 DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGF--PTIKV 78 (103)
T ss_pred CeEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCcc--CEEEE
Confidence 37889999999988887778999999999999999 9999999999988999999999999999999999999 99999
Q ss_pred eccCCCCCCCeeeecCcccHHHHHHHH
Q 013319 279 YSYKAGDKGSLVEYNEHLVAKNLKSFC 305 (445)
Q Consensus 279 f~~~~~~~g~~~~y~g~~~~~~l~~fi 305 (445)
|+.+ ......|.|.++.++|++|+
T Consensus 79 ~~~~---~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 79 FGAG---KNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred ECCC---CcceeecCCCCCHHHHHHHh
Confidence 9543 12567899999999999997
No 37
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2.5e-18 Score=172.63 Aligned_cols=69 Identities=58% Similarity=0.986 Sum_probs=65.4
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
..|||+||||+++|+.+|||+|||+|+++||||+++ ++.++++|++|++||++|+||.+|+.||+||+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~ 72 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTA 72 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence 479999999999999999999999999999999997 467899999999999999999999999999875
No 38
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=6.8e-18 Score=169.23 Aligned_cols=68 Identities=57% Similarity=0.975 Sum_probs=65.7
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 30 VDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 30 ~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
.|||+||||+++|+.+|||+|||+|+++||||+++++.+.++|++|++||++|+||.+|+.||.||+.
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~ 69 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA 69 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence 69999999999999999999999999999999999888999999999999999999999999999875
No 39
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=7.3e-18 Score=168.72 Aligned_cols=68 Identities=51% Similarity=0.905 Sum_probs=65.2
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 30 VDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 30 ~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
.|||+||||+++||.+|||+|||+++++||||+++.+.++++|++|++||++|+|+.+|+.||+||++
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~ 70 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD 70 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccc
Confidence 69999999999999999999999999999999998777889999999999999999999999999875
No 40
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=1.3e-17 Score=166.52 Aligned_cols=68 Identities=51% Similarity=0.878 Sum_probs=64.3
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCh--HHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 30 VDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNK--AAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 30 ~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
.|||+||||+++|+.+|||+|||+|+++||||+++.. .+.++|++|++||++|+||.+|+.||.||+.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~ 72 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV 72 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence 6999999999999999999999999999999999743 6889999999999999999999999999875
No 41
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=1.3e-17 Score=168.15 Aligned_cols=69 Identities=52% Similarity=0.965 Sum_probs=65.2
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC-hHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCCC
Q 013319 30 VDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN-KAAQEKFAEINNAYDILSDEEKRKNYDLYGDEK 98 (445)
Q Consensus 30 ~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~ 98 (445)
.|||+||||+++|+.+|||+|||+|+++||||+++. +.++++|++|++||++|+||.+|+.||+||+..
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~ 72 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAG 72 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchh
Confidence 699999999999999999999999999999999974 678899999999999999999999999999763
No 42
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=8.4e-18 Score=168.94 Aligned_cols=69 Identities=55% Similarity=0.955 Sum_probs=64.7
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHhhh----cCCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKNYDL----YGDE 97 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~----~g~~ 97 (445)
..|||+||||+++|+.+|||+|||+|+++||||+++ ++.++++|++|++||++|+||.+|+.||+ ||+.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~ 81 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNG 81 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccc
Confidence 469999999999999999999999999999999997 45789999999999999999999999999 8765
No 43
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=6.9e-18 Score=157.66 Aligned_cols=105 Identities=22% Similarity=0.495 Sum_probs=98.5
Q ss_pred cccccChhhHHHHhhcCCc--EEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEE
Q 013319 200 NIRALNLQVFKKEIVEKGM--TWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRI 276 (445)
Q Consensus 200 ~V~~Lt~~~f~~~v~~~~~--~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti 276 (445)
.|.++|+.||...|.++++ |+||.||+|||++|+. .|..++++.+++|.+++++|||++++.++.+|||+++ ||+
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsI--PtV 101 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSI--PTV 101 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcC--CeE
Confidence 3899999999999887764 9999999999999999 9999999999999999999999999999999999999 999
Q ss_pred EEeccCCCCCCCeee-ecCcccHHHHHHHHHhhCCC
Q 013319 277 FAYSYKAGDKGSLVE-YNEHLVAKNLKSFCRDHLPR 311 (445)
Q Consensus 277 ~~f~~~~~~~g~~~~-y~g~~~~~~l~~fi~~~lp~ 311 (445)
++| .+|+++. |.|....+.|.+|+.++++.
T Consensus 102 ~af-----~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 102 YAF-----KDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEe-----eCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 999 6787777 99998899999999999885
No 44
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.73 E-value=8e-18 Score=155.72 Aligned_cols=106 Identities=19% Similarity=0.399 Sum_probs=93.8
Q ss_pred CCcccccChhhHHHHhhcC----CcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCC
Q 013319 198 SGNIRALNLQVFKKEIVEK----GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPR 272 (445)
Q Consensus 198 ~~~V~~Lt~~~f~~~v~~~----~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~ 272 (445)
.+.|++||+++|++.+... +.+|+|.||+|||++|+. .|.|+++++++++.+.+++|||++++.+|++|+|+++
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~- 107 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGY- 107 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcC-
Confidence 4569999999999877543 468999999999999999 9999999999998999999999999999999999999
Q ss_pred CcEEEEeccCCCCCCCeeee-cCcccHHHHHHHHHhhCC
Q 013319 273 SPRIFAYSYKAGDKGSLVEY-NEHLVAKNLKSFCRDHLP 310 (445)
Q Consensus 273 ~Pti~~f~~~~~~~g~~~~y-~g~~~~~~l~~fi~~~lp 310 (445)
||+++|+ +|+.+.| .|.++.++|.+|+.+.+.
T Consensus 108 -PTl~~f~-----~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 108 -PTLLLFD-----KGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred -CEEEEEE-----CCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 9999994 4556665 577899999999987654
No 45
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.73 E-value=5.4e-18 Score=139.91 Aligned_cols=99 Identities=17% Similarity=0.180 Sum_probs=80.6
Q ss_pred ccccChhhHHHHhhcCCcEEEEEEEC--CCCc---cCCC-hhHHHHHHHHhcCccEEEEEeC-----ccchhhHhHhCCc
Q 013319 201 IRALNLQVFKKEIVEKGMTWLLFFYS--PSSN---RDGY-ESVIEEVANSMEGALKVGSINC-----ETEASLCKELGVH 269 (445)
Q Consensus 201 V~~Lt~~~f~~~v~~~~~~~lV~Fya--p~C~---~C~~-~p~~~~~a~~l~~~v~~~~Vdc-----~~~~~lc~~~~I~ 269 (445)
++.||+.||++.| .+.+.+||+||| |||+ ||+. +|+|.+++. .|.+++||| .++.+||++|+|+
T Consensus 3 ~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I~ 77 (116)
T cd03007 3 CVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKLD 77 (116)
T ss_pred eeECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCCC
Confidence 7899999998855 666789999999 8888 6666 666666554 388999999 5678999999999
Q ss_pred --cCCCcEEEEeccCCCCCCCeeeecCc-ccHHHHHHHHHhh
Q 013319 270 --RPRSPRIFAYSYKAGDKGSLVEYNEH-LVAKNLKSFCRDH 308 (445)
Q Consensus 270 --~~~~Pti~~f~~~~~~~g~~~~y~g~-~~~~~l~~fi~~~ 308 (445)
+| |||++|.++. ...++.|.|. ++.+.|++||.++
T Consensus 78 ~~gy--PTl~lF~~g~--~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 78 KESY--PVIYLFHGGD--FENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred cCCC--CEEEEEeCCC--cCCCccCCCCcccHHHHHHHHHhc
Confidence 99 9999995331 1145789997 9999999999864
No 46
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.73 E-value=1.2e-17 Score=138.36 Aligned_cols=101 Identities=20% Similarity=0.302 Sum_probs=87.5
Q ss_pred cccccChhhHHHHhh--cCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCcc-chhhHhH-hCCccCCC
Q 013319 200 NIRALNLQVFKKEIV--EKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCET-EASLCKE-LGVHRPRS 273 (445)
Q Consensus 200 ~V~~Lt~~~f~~~v~--~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~-~~~lc~~-~~I~~~~~ 273 (445)
.|.+|+.++|+..+. +++++|||.||+|||++|+. .|.|+++++.+++ .+.+++|||+. +..+|.+ ++|+.+
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~-- 79 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSF-- 79 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcC--
Confidence 488999999988774 35679999999999999999 9999999999987 59999999998 5888975 999999
Q ss_pred cEEEEeccCCCCCCCeeeecCc-ccHHHHHHHH
Q 013319 274 PRIFAYSYKAGDKGSLVEYNEH-LVAKNLKSFC 305 (445)
Q Consensus 274 Pti~~f~~~~~~~g~~~~y~g~-~~~~~l~~fi 305 (445)
||+++|+++. ..+..|.|. ++.++|+.||
T Consensus 80 Pti~~f~~~~---~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 80 PTILFFPKNS---RQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CEEEEEcCCC---CCceeccCCCCCHHHHHhhC
Confidence 9999995432 356889995 8999999885
No 47
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1e-17 Score=148.39 Aligned_cols=81 Identities=36% Similarity=0.714 Sum_probs=72.4
Q ss_pred HhhhcCCCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC-hHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCCCCC
Q 013319 22 ILNAKAKTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN-KAAQEKFAEINNAYDILSDEEKRKNYDLYGDEKGS 100 (445)
Q Consensus 22 ~~~~~~~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~ 100 (445)
.+.......|||+||||+++++++|||+|||+|++++||||++. .+.++.|..|++||+.|+|+..|..|..||++++.
T Consensus 91 ~~~~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGp 170 (230)
T KOG0721|consen 91 NSRRERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGP 170 (230)
T ss_pred hhhHHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCc
Confidence 33345678999999999999999999999999999999999987 56778899999999999999999999999998765
Q ss_pred CC
Q 013319 101 PG 102 (445)
Q Consensus 101 ~~ 102 (445)
++
T Consensus 171 q~ 172 (230)
T KOG0721|consen 171 QA 172 (230)
T ss_pred cc
Confidence 44
No 48
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=3.6e-17 Score=164.73 Aligned_cols=69 Identities=52% Similarity=0.888 Sum_probs=65.4
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
..|||+||||+++|+.+||++|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||.||+.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~ 73 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA 73 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence 579999999999999999999999999999999997 457899999999999999999999999999875
No 49
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.72 E-value=1.9e-17 Score=137.52 Aligned_cols=99 Identities=22% Similarity=0.332 Sum_probs=86.2
Q ss_pred cccChhhHHHHhhc--CCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCccchhhHhHhCCccCCCcEEE
Q 013319 202 RALNLQVFKKEIVE--KGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCETEASLCKELGVHRPRSPRIF 277 (445)
Q Consensus 202 ~~Lt~~~f~~~v~~--~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~ 277 (445)
..++.++|++.+.. .+.+|||.||||||++|+. .|+|+++++++.+ .+.+++|||++++.+|++++|.++ ||++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~--Pt~~ 84 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSV--PAIV 84 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccC--CEEE
Confidence 45688899877764 5679999999999999999 9999999999986 599999999999999999999999 9999
Q ss_pred EeccCCCCCCCee-eecCcccHHHHHHHHHh
Q 013319 278 AYSYKAGDKGSLV-EYNEHLVAKNLKSFCRD 307 (445)
Q Consensus 278 ~f~~~~~~~g~~~-~y~g~~~~~~l~~fi~~ 307 (445)
+|+ +|+.. .+.|..+.+.|.+||.+
T Consensus 85 i~~-----~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 85 GII-----NGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EEE-----CCEEEEEecCCCCHHHHHHHHhc
Confidence 993 44444 45788899999999975
No 50
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.72 E-value=3.1e-17 Score=163.66 Aligned_cols=67 Identities=57% Similarity=1.009 Sum_probs=64.4
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 31 DLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 31 d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
|||+||||+++|+.+|||+|||+|+++||||+++.+.+.++|++|++||++|+|+.+|+.||.||+.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~ 67 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHA 67 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccc
Confidence 7999999999999999999999999999999998777899999999999999999999999999875
No 51
>PRK09381 trxA thioredoxin; Provisional
Probab=99.72 E-value=3.3e-17 Score=135.63 Aligned_cols=105 Identities=19% Similarity=0.358 Sum_probs=94.3
Q ss_pred CCcccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEE
Q 013319 198 SGNIRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRI 276 (445)
Q Consensus 198 ~~~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti 276 (445)
++.|++++.++|.+.+.+.+.+++|.||+|||++|+. .|.|+++++++.+.+.++.|||+.+..++++++|+.+ ||+
T Consensus 2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~--Pt~ 79 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGI--PTL 79 (109)
T ss_pred CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcC--CEE
Confidence 4568999999999888888889999999999999999 9999999999988899999999999999999999999 999
Q ss_pred EEeccCCCCCCCee-eecCcccHHHHHHHHHhhC
Q 013319 277 FAYSYKAGDKGSLV-EYNEHLVAKNLKSFCRDHL 309 (445)
Q Consensus 277 ~~f~~~~~~~g~~~-~y~g~~~~~~l~~fi~~~l 309 (445)
++|+ +|+.+ .+.|..+.+.|..|+..++
T Consensus 80 ~~~~-----~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 80 LLFK-----NGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEe-----CCeEEEEecCCCCHHHHHHHHHHhc
Confidence 9993 45433 5788888999999998765
No 52
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.71 E-value=3.5e-17 Score=133.52 Aligned_cols=97 Identities=20% Similarity=0.401 Sum_probs=85.5
Q ss_pred ccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC---ccEEEEEeCccchhhHhHhCCccCCCcEE
Q 013319 201 IRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG---ALKVGSINCETEASLCKELGVHRPRSPRI 276 (445)
Q Consensus 201 V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~---~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti 276 (445)
|.+|+.++|++.+.+. +++|.||++||++|+. .|.|+++++++++ .+.+++|||+++..+|++++|.++ ||+
T Consensus 2 ~~~l~~~~f~~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~--Pt~ 77 (102)
T cd03005 2 VLELTEDNFDHHIAEG--NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGY--PTL 77 (102)
T ss_pred eeECCHHHHHHHhhcC--CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcC--CEE
Confidence 6889999998877543 4999999999999999 9999999999986 799999999999999999999999 999
Q ss_pred EEeccCCCCCCCeeeecCcccHHHHHHHH
Q 013319 277 FAYSYKAGDKGSLVEYNEHLVAKNLKSFC 305 (445)
Q Consensus 277 ~~f~~~~~~~g~~~~y~g~~~~~~l~~fi 305 (445)
++|+.+ .....|.|.++.++|.+||
T Consensus 78 ~~~~~g----~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 78 LLFKDG----EKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEeCC----CeeeEeeCCCCHHHHHhhC
Confidence 999432 2345799999999998875
No 53
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.4e-17 Score=167.09 Aligned_cols=70 Identities=51% Similarity=0.931 Sum_probs=66.9
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 28 KTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 28 ~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
+..|||+||||+++|+.+|||+|||+|+++||||+|+.+.++++|++|++||++|+||.+|+.||+||++
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~ 72 (378)
T PRK14283 3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHA 72 (378)
T ss_pred CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccc
Confidence 3579999999999999999999999999999999998888999999999999999999999999999876
No 54
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.70 E-value=4.5e-17 Score=133.19 Aligned_cols=101 Identities=16% Similarity=0.314 Sum_probs=88.9
Q ss_pred cccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC--ccEEEEEeCccchhhHhHhCCccCCCcEE
Q 013319 200 NIRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG--ALKVGSINCETEASLCKELGVHRPRSPRI 276 (445)
Q Consensus 200 ~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~--~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti 276 (445)
+|.+|+.++|++.+.+.+.+++|.||+|||++|+. .|.|+++++.+++ .+.+++|||+.+ ++|..+++.++ ||+
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~--Pt~ 77 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGF--PTI 77 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCC--CEE
Confidence 37899999999988887789999999999999999 9999999999987 599999999987 68889999999 999
Q ss_pred EEeccCCCCCCCeeeecCcccHHHHHHHH
Q 013319 277 FAYSYKAGDKGSLVEYNEHLVAKNLKSFC 305 (445)
Q Consensus 277 ~~f~~~~~~~g~~~~y~g~~~~~~l~~fi 305 (445)
++|+.+.. .....|.|..+.++|.+||
T Consensus 78 ~~~~~~~~--~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 78 LFFPAGDK--SNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEcCCCc--CCceEccCCcCHHHHHhhC
Confidence 99965431 2467899999999999985
No 55
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=3e-17 Score=164.22 Aligned_cols=69 Identities=46% Similarity=0.847 Sum_probs=65.0
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--hHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN--KAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
..|||+||||+++|+.+|||+|||+|+++||||+++. +.++++|++|++||++|+||.+|+.||+||..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~ 73 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV 73 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence 4799999999999999999999999999999999974 56889999999999999999999999999875
No 56
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.69 E-value=2.3e-17 Score=166.52 Aligned_cols=67 Identities=49% Similarity=0.863 Sum_probs=62.7
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 28 KTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 28 ~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
...|||+||||+++||.+|||+|||+||++||||++++ .++|++|++||++|+||.+|+.||.||+.
T Consensus 26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~ 92 (421)
T PTZ00037 26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGEE 92 (421)
T ss_pred cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcch
Confidence 35799999999999999999999999999999999864 58999999999999999999999999865
No 57
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.69 E-value=1.2e-16 Score=128.92 Aligned_cols=91 Identities=16% Similarity=0.434 Sum_probs=80.9
Q ss_pred hHHHHhhcC-CcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEeccCCCC
Q 013319 208 VFKKEIVEK-GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYSYKAGD 285 (445)
Q Consensus 208 ~f~~~v~~~-~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~~~~~ 285 (445)
+|++.|.+. +.++||.||+|||++|+. .|.|+++++.+.+.+.+++|||++++.+|++++|.++ ||+++|.
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~--Pt~~~~~----- 74 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQAL--PTVYLFA----- 74 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCC--CEEEEEe-----
Confidence 577777655 679999999999999999 9999999999988899999999999999999999999 9999993
Q ss_pred CCCe-eeecCcccHHHHHHHH
Q 013319 286 KGSL-VEYNEHLVAKNLKSFC 305 (445)
Q Consensus 286 ~g~~-~~y~g~~~~~~l~~fi 305 (445)
+|+. ..+.|..+.++|..|+
T Consensus 75 ~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 75 AGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred CCEEeeeecCCCCHHHHHHHh
Confidence 4443 3588998999999887
No 58
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.5e-17 Score=150.92 Aligned_cols=71 Identities=54% Similarity=0.884 Sum_probs=66.8
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC-hHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCCC
Q 013319 28 KTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN-KAAQEKFAEINNAYDILSDEEKRKNYDLYGDEK 98 (445)
Q Consensus 28 ~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~ 98 (445)
...|+|+||||+++|+.++||++||+|++++|||++++ +++.++|++||+||++|+||.+|..||.||+..
T Consensus 29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~ 100 (279)
T KOG0716|consen 29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELG 100 (279)
T ss_pred chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHH
Confidence 35789999999999999999999999999999999986 889999999999999999999999999998763
No 59
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.69 E-value=4.2e-17 Score=121.50 Aligned_cols=62 Identities=56% Similarity=0.958 Sum_probs=59.2
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChH--HHHHHHHHHHHHHHcCCHHHHHHhh
Q 013319 31 DLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKA--AQEKFAEINNAYDILSDEEKRKNYD 92 (445)
Q Consensus 31 d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~--~~~~f~~i~~Ay~~L~d~~~r~~yd 92 (445)
|||+||||+++++.++|+++|+++++.+|||++.... +.+.|.+|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999988754 8999999999999999999999998
No 60
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.68 E-value=7.4e-17 Score=152.23 Aligned_cols=69 Identities=46% Similarity=0.765 Sum_probs=63.6
Q ss_pred cCCCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC----hHHHHHHHHHHHHHHHcCCHHHHHHhhhc
Q 013319 26 KAKTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN----KAAQEKFAEINNAYDILSDEEKRKNYDLY 94 (445)
Q Consensus 26 ~~~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~----~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~ 94 (445)
....+|||+||||.++|+..||.+|||+++.+||||-..+ +.++.+|..|..|-+||+||++|+.+|.-
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG 462 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG 462 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence 3467999999999999999999999999999999998775 35888999999999999999999999973
No 61
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.68 E-value=1.4e-15 Score=141.44 Aligned_cols=192 Identities=14% Similarity=0.144 Sum_probs=125.3
Q ss_pred ccChhhHHHHhhcCCcEEEEEEEC---CCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCccchhhHhHhCCccCCCcEEE
Q 013319 203 ALNLQVFKKEIVEKGMTWLLFFYS---PSSNRDGY-ESVIEEVANSMEG-ALKVGSINCETEASLCKELGVHRPRSPRIF 277 (445)
Q Consensus 203 ~Lt~~~f~~~v~~~~~~~lV~Fya---p~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~ 277 (445)
......|.+.+ .+...++.|++ +||++|+. .|.++++++++.. .+.++.||.+++++++++|+|.++ ||++
T Consensus 7 ~~~~~~~~~~~--~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~--Pt~~ 82 (215)
T TIGR02187 7 EILKELFLKEL--KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERV--PTTI 82 (215)
T ss_pred HHHHHHHHHhc--CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCcc--CEEE
Confidence 33445544444 23456778999 99999999 9999999999854 355666677799999999999999 9999
Q ss_pred EeccCCCCCCCe--eeecCcccHHHHHHHHHhhCCC--CceeccccccchhhhccCCCCEEEEEecCCC-----ChHHHH
Q 013319 278 AYSYKAGDKGSL--VEYNEHLVAKNLKSFCRDHLPR--FSKRISLNRIEFTFDAKARLPSVLLLSTKKE-----TPIIWR 348 (445)
Q Consensus 278 ~f~~~~~~~g~~--~~y~g~~~~~~l~~fi~~~lp~--~~~~i~~~~~~~~~~~~~~~~~vvlF~~~~~-----~~~~~~ 348 (445)
+|. +|.. ..+.|..+.++|.+|+...+.- ....++....+ ..........+++|+..+. +-+.+.
T Consensus 83 ~f~-----~g~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L~~~~~~-~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~ 156 (215)
T TIGR02187 83 ILE-----EGKDGGIRYTGIPAGYEFAALIEDIVRVSQGEPGLSEKTVE-LLQSLDEPVRIEVFVTPTCPYCPYAVLMAH 156 (215)
T ss_pred EEe-----CCeeeEEEEeecCCHHHHHHHHHHHHHhcCCCCCCCHHHHH-HHHhcCCCcEEEEEECCCCCCcHHHHHHHH
Confidence 993 4433 3688988888999999876421 11112211122 1122233334554655432 134556
Q ss_pred HHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccChhhHHHHH
Q 013319 349 VLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGISVKDQKSSI 409 (445)
Q Consensus 349 ~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~~~~~~~~ 409 (445)
.++... +.+.+..+++. .+++++++|+|.++||++++..+. . +.+....+++..++
T Consensus 157 ~l~~~~-~~i~~~~vD~~-~~~~~~~~~~V~~vPtl~i~~~~~-~--~~G~~~~~~l~~~l 212 (215)
T TIGR02187 157 KFALAN-DKILGEMIEAN-ENPDLAEKYGVMSVPKIVINKGVE-E--FVGAYPEEQFLEYI 212 (215)
T ss_pred HHHHhc-CceEEEEEeCC-CCHHHHHHhCCccCCEEEEecCCE-E--EECCCCHHHHHHHH
Confidence 666553 45666555443 678999999999999999764432 1 55555556665544
No 62
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.68 E-value=1.7e-16 Score=129.20 Aligned_cols=98 Identities=18% Similarity=0.318 Sum_probs=87.5
Q ss_pred cChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC--ccEEEEEeCccchhhHhHhCCccCCCcEEEEec
Q 013319 204 LNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG--ALKVGSINCETEASLCKELGVHRPRSPRIFAYS 280 (445)
Q Consensus 204 Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~--~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~ 280 (445)
|++++|++.+. ++.+++|.||++||++|+. .|.|+++++.+++ .+.++.+||++++.+|++++|..+ |++++|+
T Consensus 1 l~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~--P~~~~~~ 77 (102)
T TIGR01126 1 LTASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGF--PTIKFFP 77 (102)
T ss_pred CchhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcC--CEEEEec
Confidence 57889987665 7789999999999999999 9999999999987 699999999999999999999999 9999994
Q ss_pred cCCCCCCCeeeecCcccHHHHHHHHHhh
Q 013319 281 YKAGDKGSLVEYNEHLVAKNLKSFCRDH 308 (445)
Q Consensus 281 ~~~~~~g~~~~y~g~~~~~~l~~fi~~~ 308 (445)
.+ +.+..|.|..+.++|..||.++
T Consensus 78 ~~----~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 78 KG----KKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred CC----CcceeecCCCCHHHHHHHHHhc
Confidence 32 2367899999999999999875
No 63
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.68 E-value=1.4e-16 Score=129.79 Aligned_cols=89 Identities=16% Similarity=0.207 Sum_probs=77.2
Q ss_pred HHHHhh-cCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCc-cchhhHhHhCCccCCCcEEEEeccCCCC
Q 013319 209 FKKEIV-EKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCE-TEASLCKELGVHRPRSPRIFAYSYKAGD 285 (445)
Q Consensus 209 f~~~v~-~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~-~~~~lc~~~~I~~~~~Pti~~f~~~~~~ 285 (445)
+.+.+. .++++++|.|||+||++|+. .|.|+++++.+.+ +.+++||++ +++.+|++++|+++ ||+++|+
T Consensus 9 ~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~~--PT~~lf~----- 80 (100)
T cd02999 9 ALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGF--PTILLFN----- 80 (100)
T ss_pred HHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCeec--CEEEEEc-----
Confidence 334433 45679999999999999999 9999999999975 788999999 78999999999999 9999994
Q ss_pred CCCeeeecCcccHHHHHHHH
Q 013319 286 KGSLVEYNEHLVAKNLKSFC 305 (445)
Q Consensus 286 ~g~~~~y~g~~~~~~l~~fi 305 (445)
+|.+..|.|.++.++|.+|+
T Consensus 81 ~g~~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 81 STPRVRYNGTRTLDSLAAFY 100 (100)
T ss_pred CCceeEecCCCCHHHHHhhC
Confidence 34567899999999999985
No 64
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.67 E-value=1.9e-16 Score=129.61 Aligned_cols=100 Identities=18% Similarity=0.269 Sum_probs=88.4
Q ss_pred ccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhc--CccEEEEEeCcc-chhhHhHhCCccCCCcEE
Q 013319 201 IRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSME--GALKVGSINCET-EASLCKELGVHRPRSPRI 276 (445)
Q Consensus 201 V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~--~~v~~~~Vdc~~-~~~lc~~~~I~~~~~Pti 276 (445)
|.+|++++|+..+.+.+.+++|.||++||++|+. .|.|+++++.++ +.+.++.+||+. ++.+|++++|.++ |++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~--P~~ 79 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGF--PTL 79 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCc--CEE
Confidence 6788999998877666668999999999999999 999999999997 469999999999 8999999999999 999
Q ss_pred EEeccCCCCCCCeeeecCcccHHHHHHHH
Q 013319 277 FAYSYKAGDKGSLVEYNEHLVAKNLKSFC 305 (445)
Q Consensus 277 ~~f~~~~~~~g~~~~y~g~~~~~~l~~fi 305 (445)
++|..+. .....|.|.++.++|.+|+
T Consensus 80 ~~~~~~~---~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 80 KFFPKGS---TEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEeCCC---CCccccCCccCHHHHHhhC
Confidence 9995432 2456799999999999885
No 65
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=9.1e-17 Score=161.87 Aligned_cols=68 Identities=49% Similarity=0.948 Sum_probs=64.6
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC-hHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 30 VDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN-KAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 30 ~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
.|||+||||+++|+.+|||+|||+|+++||||+++. +.++++|++|++||++|+||.+|+.||+||+.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 69 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKD 69 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence 489999999999999999999999999999999984 67889999999999999999999999999975
No 66
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.66 E-value=4.3e-16 Score=130.01 Aligned_cols=102 Identities=15% Similarity=0.351 Sum_probs=84.2
Q ss_pred cccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC---ccEEEEEeCcc--chhhHhHhCCccCCC
Q 013319 200 NIRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG---ALKVGSINCET--EASLCKELGVHRPRS 273 (445)
Q Consensus 200 ~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~---~v~~~~Vdc~~--~~~lc~~~~I~~~~~ 273 (445)
.|++|+.++|++.|.+.+.++||.||++||++|+. .|.|+++++.++. .+.+++|||+. +..+|++++|+++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~-- 79 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGY-- 79 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCC--
Confidence 48899999999988887789999999999999999 9999999999864 59999999974 5789999999999
Q ss_pred cEEEEeccCCCCCCCeeeecCc-ccHHHHHH
Q 013319 274 PRIFAYSYKAGDKGSLVEYNEH-LVAKNLKS 303 (445)
Q Consensus 274 Pti~~f~~~~~~~g~~~~y~g~-~~~~~l~~ 303 (445)
||+++|+.+....-....|.|. +..+++.+
T Consensus 80 Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 80 PTLRYFPPFSKEATDGLKQEGPERDVNELRE 110 (114)
T ss_pred CEEEEECCCCccCCCCCcccCCccCHHHHHH
Confidence 9999997665222234567776 55566544
No 67
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.2e-16 Score=155.68 Aligned_cols=82 Identities=43% Similarity=0.807 Sum_probs=73.1
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC----hHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCCCCC-CC
Q 013319 28 KTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN----KAAQEKFAEINNAYDILSDEEKRKNYDLYGDEKGS-PG 102 (445)
Q Consensus 28 ~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~----~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~-~~ 102 (445)
.+.|||.+|+|+++||.+||++|||++++.+||||..+ +.|++.|++|.+|||+|+||.+|.+||.||++++. .+
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t~g 86 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKTEG 86 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccccC
Confidence 35699999999999999999999999999999999874 35789999999999999999999999999999877 66
Q ss_pred CCCCCCC
Q 013319 103 FDAGHPG 109 (445)
Q Consensus 103 ~~~~~~~ 109 (445)
+..++++
T Consensus 87 wEl~~r~ 93 (546)
T KOG0718|consen 87 WELGFRG 93 (546)
T ss_pred ceeecCC
Confidence 6665544
No 68
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.65 E-value=5e-16 Score=127.05 Aligned_cols=97 Identities=20% Similarity=0.351 Sum_probs=85.3
Q ss_pred ccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhc--CccEEEEEeCcc--chhhHhHhCCccCCCcE
Q 013319 201 IRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSME--GALKVGSINCET--EASLCKELGVHRPRSPR 275 (445)
Q Consensus 201 V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~--~~v~~~~Vdc~~--~~~lc~~~~I~~~~~Pt 275 (445)
|.+|++.+|+..+. .+++++|.||++||++|+. .|.++++++.+. +.+.++.|||+. +..+|++++|.++ ||
T Consensus 2 ~~~l~~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~--Pt 78 (104)
T cd02997 2 VVHLTDEDFRKFLK-KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGF--PT 78 (104)
T ss_pred eEEechHhHHHHHh-hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccc--cE
Confidence 78899999987664 4558999999999999999 999999999997 578999999999 8999999999999 99
Q ss_pred EEEeccCCCCCCC-eeeecCcccHHHHHHHH
Q 013319 276 IFAYSYKAGDKGS-LVEYNEHLVAKNLKSFC 305 (445)
Q Consensus 276 i~~f~~~~~~~g~-~~~y~g~~~~~~l~~fi 305 (445)
+++|+ +|+ ...|.|..+.++|.+|+
T Consensus 79 ~~~~~-----~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 79 FKYFE-----NGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEEEe-----CCCeeEEeCCCCCHHHHHhhC
Confidence 99994 333 56799999999998885
No 69
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.6e-16 Score=149.58 Aligned_cols=69 Identities=48% Similarity=0.826 Sum_probs=66.5
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
..|||+||||+.+|+..||++|||+.+++||||||+ +|.|.++|+.|.+||++|+|+..|.+||.+|..
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~ 73 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKS 73 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 689999999999999999999999999999999999 588999999999999999999999999999876
No 70
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.63 E-value=1.5e-15 Score=124.55 Aligned_cols=97 Identities=24% Similarity=0.398 Sum_probs=82.6
Q ss_pred cccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC---ccEEEEEeCccchhhHhHhCCccCCCcEEE
Q 013319 202 RALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG---ALKVGSINCETEASLCKELGVHRPRSPRIF 277 (445)
Q Consensus 202 ~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~---~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~ 277 (445)
.++. ++|++ +. ++.+++|.||++||++|+. .|.|+++++.++. .+.++.+||+.++.+|++++|.++ ||++
T Consensus 3 ~~~~-~~~~~-~~-~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~--Pt~~ 77 (104)
T cd03000 3 LDLD-DSFKD-VR-KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGY--PTIK 77 (104)
T ss_pred eech-hhhhh-hc-cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccc--cEEE
Confidence 3443 67865 43 3568999999999999999 9999999999853 599999999999999999999999 9999
Q ss_pred EeccCCCCCCCeeeecCcccHHHHHHHHHhh
Q 013319 278 AYSYKAGDKGSLVEYNEHLVAKNLKSFCRDH 308 (445)
Q Consensus 278 ~f~~~~~~~g~~~~y~g~~~~~~l~~fi~~~ 308 (445)
+|. ++....|.|.++.++|.+|+++.
T Consensus 78 l~~-----~~~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 78 LLK-----GDLAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred EEc-----CCCceeecCCCCHHHHHHHHHhh
Confidence 993 34557799999999999999763
No 71
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.1e-16 Score=150.55 Aligned_cols=69 Identities=62% Similarity=0.977 Sum_probs=66.2
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
..|||+||||+++|+..|||+||++|++++|||.+..+.+.++|++|.+||++|+|+++|..||.++..
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~ 110 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLE 110 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence 349999999999999999999999999999999999999999999999999999999999999998765
No 72
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2e-16 Score=154.15 Aligned_cols=74 Identities=45% Similarity=0.691 Sum_probs=67.8
Q ss_pred cCCCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--hHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCCCC
Q 013319 26 KAKTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN--KAAQEKFAEINNAYDILSDEEKRKNYDLYGDEKG 99 (445)
Q Consensus 26 ~~~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 99 (445)
+...+.||+||||.++|++.+||++||+||++||||+|+. ..++++|+.|+.||+|||||..|..||.+.++.+
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil 79 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQIL 79 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHh
Confidence 4457899999999999999999999999999999999885 5789999999999999999999999998876543
No 73
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=3.8e-16 Score=156.60 Aligned_cols=68 Identities=46% Similarity=0.920 Sum_probs=65.5
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 30 VDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 30 ~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
.|||+||||+++|+.+|||+|||+|+++||||+++.+.++++|++|++||++|+||.+|+.||.||+.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~ 70 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEA 70 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence 69999999999999999999999999999999998888899999999999999999999999999865
No 74
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.62 E-value=4.2e-16 Score=152.21 Aligned_cols=68 Identities=34% Similarity=0.692 Sum_probs=65.0
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGD 96 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~ 96 (445)
..|||+||||+++|+.+|||+|||+|+++||||+++.+.++++|++|++||++|+||.+|+.||.||.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 37999999999999999999999999999999999877899999999999999999999999999875
No 75
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.62 E-value=5.6e-16 Score=163.75 Aligned_cols=71 Identities=37% Similarity=0.625 Sum_probs=67.2
Q ss_pred CCCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 27 AKTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 27 ~~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
....+||+||||+++|+..+||+|||+||++||||+++.+.+.++|++|++||++|+||.+|+.||.||..
T Consensus 570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~ 640 (1136)
T PTZ00341 570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYD 640 (1136)
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhcccc
Confidence 35689999999999999999999999999999999998777889999999999999999999999999876
No 76
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.62 E-value=1.3e-15 Score=123.03 Aligned_cols=98 Identities=22% Similarity=0.390 Sum_probs=85.1
Q ss_pred cccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHh--cCccEEEEEeCccchhhHhHhCCccCCCcEEEE
Q 013319 202 RALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSM--EGALKVGSINCETEASLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 202 ~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l--~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~ 278 (445)
++|+.++|.+.+.+.+ +++|.||++||++|+. .|.|+++++.+ ...+.++.|||+++..+|++++|..+ ||+++
T Consensus 1 ~~l~~~~~~~~i~~~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~--Pt~~~ 77 (101)
T cd02961 1 VELTDDNFDELVKDSK-DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGY--PTIKL 77 (101)
T ss_pred CcccHHHHHHHHhCCC-cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCC--CEEEE
Confidence 3678899987665554 8999999999999999 99999999999 46899999999999999999999999 99999
Q ss_pred eccCCCCCCCeeeecCcccHHHHHHHH
Q 013319 279 YSYKAGDKGSLVEYNEHLVAKNLKSFC 305 (445)
Q Consensus 279 f~~~~~~~g~~~~y~g~~~~~~l~~fi 305 (445)
|+.+. .....|.|..+.++|.+|+
T Consensus 78 ~~~~~---~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 78 FPNGS---KEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred EcCCC---cccccCCCCcCHHHHHhhC
Confidence 94321 3567799998999998874
No 77
>PRK10996 thioredoxin 2; Provisional
Probab=99.62 E-value=2.3e-15 Score=130.09 Aligned_cols=102 Identities=18% Similarity=0.328 Sum_probs=89.9
Q ss_pred cccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEE
Q 013319 200 NIRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 200 ~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~ 278 (445)
.+++++.++|++. .+.+++++|.||++||++|+. .|.++++++++.+.+.+++||+++++.++++++|.++ ||+++
T Consensus 36 ~~i~~~~~~~~~~-i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~--Ptlii 112 (139)
T PRK10996 36 EVINATGETLDKL-LQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSI--PTIMI 112 (139)
T ss_pred CCEEcCHHHHHHH-HhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCcc--CEEEE
Confidence 3678999999775 466789999999999999999 9999999999988899999999999999999999999 99999
Q ss_pred eccCCCCCCCee-eecCcccHHHHHHHHHhhC
Q 013319 279 YSYKAGDKGSLV-EYNEHLVAKNLKSFCRDHL 309 (445)
Q Consensus 279 f~~~~~~~g~~~-~y~g~~~~~~l~~fi~~~l 309 (445)
|+ +|+.+ .+.|..+.+.|.+|+.+.+
T Consensus 113 ~~-----~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 113 FK-----NGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EE-----CCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 93 45444 4789889999999998753
No 78
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.4e-16 Score=156.15 Aligned_cols=105 Identities=19% Similarity=0.318 Sum_probs=92.4
Q ss_pred CcccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC--ccEEEEEeCccchhhHhHhCCccCCCcE
Q 013319 199 GNIRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG--ALKVGSINCETEASLCKELGVHRPRSPR 275 (445)
Q Consensus 199 ~~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~--~v~~~~Vdc~~~~~lc~~~~I~~~~~Pt 275 (445)
.+|..|-.+||++.|.+.++-+||+||||||+||++ +|+|++||+.+++ .|.|+++|.+.|.-.. ..|.+| ||
T Consensus 366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~~--~~~~~f--PT 441 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVPS--LKVDGF--PT 441 (493)
T ss_pred CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCcc--cccccc--ce
Confidence 579999999999999999999999999999999999 9999999999997 7999999999875333 356679 99
Q ss_pred EEEeccCCCCCCCeeeecCcccHHHHHHHHHhhC
Q 013319 276 IFAYSYKAGDKGSLVEYNEHLVAKNLKSFCRDHL 309 (445)
Q Consensus 276 i~~f~~~~~~~g~~~~y~g~~~~~~l~~fi~~~l 309 (445)
|++||.+. +.+++.|.|.|+.++|..|+.+.-
T Consensus 442 I~~~pag~--k~~pv~y~g~R~le~~~~fi~~~a 473 (493)
T KOG0190|consen 442 ILFFPAGH--KSNPVIYNGDRTLEDLKKFIKKSA 473 (493)
T ss_pred EEEecCCC--CCCCcccCCCcchHHHHhhhccCC
Confidence 99998764 346899999999999999998654
No 79
>PLN02309 5'-adenylylsulfate reductase
Probab=99.61 E-value=2.1e-15 Score=152.89 Aligned_cols=107 Identities=22% Similarity=0.369 Sum_probs=93.2
Q ss_pred CCCcccccChhhHHHHhh--cCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCc-cchhhHh-HhCCcc
Q 013319 197 SSGNIRALNLQVFKKEIV--EKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCE-TEASLCK-ELGVHR 270 (445)
Q Consensus 197 ~~~~V~~Lt~~~f~~~v~--~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~-~~~~lc~-~~~I~~ 270 (445)
++..|++|+.++|++.+. +.+++|||.||||||++|+. .|.|+++|+++.+ .+.|++|||+ .+..+|. +++|++
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCce
Confidence 556899999999988764 56779999999999999999 9999999999976 5999999999 8889997 599999
Q ss_pred CCCcEEEEeccCCCCCCCeeeecC-cccHHHHHHHHHhh
Q 013319 271 PRSPRIFAYSYKAGDKGSLVEYNE-HLVAKNLKSFCRDH 308 (445)
Q Consensus 271 ~~~Pti~~f~~~~~~~g~~~~y~g-~~~~~~l~~fi~~~ 308 (445)
+ |||++|+++. ..++.|.| .++.++|+.||...
T Consensus 423 ~--PTil~f~~g~---~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 423 F--PTILLFPKNS---SRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred e--eEEEEEeCCC---CCeeecCCCCcCHHHHHHHHHHh
Confidence 9 9999996542 35688985 79999999999753
No 80
>PHA02278 thioredoxin-like protein
Probab=99.61 E-value=2.4e-15 Score=122.73 Aligned_cols=92 Identities=17% Similarity=0.300 Sum_probs=77.5
Q ss_pred ChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccc----hhhHhHhCCccCCCcEEEEe
Q 013319 205 NLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETE----ASLCKELGVHRPRSPRIFAY 279 (445)
Q Consensus 205 t~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~----~~lc~~~~I~~~~~Pti~~f 279 (445)
+.++|.+.+ .++.+++|.||||||++|+. .|.++++++++...+.|.+||++.+ +.++++++|+++ ||+++|
T Consensus 3 ~~~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~i--PT~i~f 79 (103)
T PHA02278 3 SLVDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMST--PVLIGY 79 (103)
T ss_pred CHHHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccc--cEEEEE
Confidence 356787766 56779999999999999999 9999999998766788999999986 689999999999 999999
Q ss_pred ccCCCCCCCee-eecCcccHHHHHHH
Q 013319 280 SYKAGDKGSLV-EYNEHLVAKNLKSF 304 (445)
Q Consensus 280 ~~~~~~~g~~~-~y~g~~~~~~l~~f 304 (445)
++|+.+ ...|..+.+.|.++
T Consensus 80 -----k~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 80 -----KDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred -----ECCEEEEEEeCCCCHHHHHhh
Confidence 455444 46787788888765
No 81
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.61 E-value=2.2e-15 Score=152.71 Aligned_cols=108 Identities=21% Similarity=0.336 Sum_probs=91.8
Q ss_pred CCCCCCcccccChhhHHHHhh--cCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCccch-hhH-hHhC
Q 013319 194 SRSSSGNIRALNLQVFKKEIV--EKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCETEA-SLC-KELG 267 (445)
Q Consensus 194 ~~~~~~~V~~Lt~~~f~~~v~--~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~~~-~lc-~~~~ 267 (445)
++ .+..|++||.+||++.|. +.+++|||.||||||++|+. .|.|+++|+++.+ .+.|++|||+.+. .+| ++++
T Consensus 347 l~-~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~ 425 (463)
T TIGR00424 347 IF-DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQ 425 (463)
T ss_pred cc-CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcC
Confidence 45 566899999999998874 46779999999999999999 9999999999987 4999999999864 455 7899
Q ss_pred CccCCCcEEEEeccCCCCCCCeeeec-CcccHHHHHHHHHh
Q 013319 268 VHRPRSPRIFAYSYKAGDKGSLVEYN-EHLVAKNLKSFCRD 307 (445)
Q Consensus 268 I~~~~~Pti~~f~~~~~~~g~~~~y~-g~~~~~~l~~fi~~ 307 (445)
|+++ |||++|+++. ..++.|. |.++.++|+.||+.
T Consensus 426 I~~~--PTii~Fk~g~---~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 426 LGSF--PTILFFPKHS---SRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred CCcc--ceEEEEECCC---CCceeCCCCCCCHHHHHHHHHh
Confidence 9999 9999996542 2467898 58999999999964
No 82
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.61 E-value=4.9e-15 Score=120.16 Aligned_cols=99 Identities=20% Similarity=0.341 Sum_probs=86.3
Q ss_pred cChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEeccC
Q 013319 204 LNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYSYK 282 (445)
Q Consensus 204 Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~~ 282 (445)
++.++|.+.+.+.+.+++|.||++||++|+. .|.++++++++.+.+.++.|||+++..++++++|..+ |++++|+
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~--P~~~~~~-- 76 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSI--PTLLLFK-- 76 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcC--CEEEEEe--
Confidence 4677888887776679999999999999999 9999999999988899999999999999999999999 9999994
Q ss_pred CCCCCCe-eeecCcccHHHHHHHHHhhC
Q 013319 283 AGDKGSL-VEYNEHLVAKNLKSFCRDHL 309 (445)
Q Consensus 283 ~~~~g~~-~~y~g~~~~~~l~~fi~~~l 309 (445)
+|+. ..+.|..+.+.|.+|+.+.+
T Consensus 77 ---~g~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 77 ---NGKEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred ---CCcEeeeecCCCCHHHHHHHHHhhC
Confidence 3433 45678888899999998753
No 83
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.59 E-value=3.7e-15 Score=129.88 Aligned_cols=84 Identities=19% Similarity=0.338 Sum_probs=74.6
Q ss_pred CCCCCcccccChhhHHHHhhcC-CcEEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCccchhhHhHhCCcc-
Q 013319 195 RSSSGNIRALNLQVFKKEIVEK-GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCETEASLCKELGVHR- 270 (445)
Q Consensus 195 ~~~~~~V~~Lt~~~f~~~v~~~-~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~~~~lc~~~~I~~- 270 (445)
+.....|.++++++|++.+... +.+|+|.||+|||++|+. .|.|+++++++.+ .+.|++|||++++++|++++|..
T Consensus 24 ~~~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~ 103 (152)
T cd02962 24 YMGPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTS 103 (152)
T ss_pred cCCCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceec
Confidence 3345678999999998877544 469999999999999999 9999999999975 59999999999999999999988
Q ss_pred -----CCCcEEEEec
Q 013319 271 -----PRSPRIFAYS 280 (445)
Q Consensus 271 -----~~~Pti~~f~ 280 (445)
+ ||+++|+
T Consensus 104 ~~v~~~--PT~ilf~ 116 (152)
T cd02962 104 PLSKQL--PTIILFQ 116 (152)
T ss_pred CCcCCC--CEEEEEE
Confidence 9 9999994
No 84
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.59 E-value=2.9e-15 Score=123.35 Aligned_cols=73 Identities=10% Similarity=0.109 Sum_probs=66.9
Q ss_pred hhhHHHHhhc-CCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEec
Q 013319 206 LQVFKKEIVE-KGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYS 280 (445)
Q Consensus 206 ~~~f~~~v~~-~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~ 280 (445)
.++|++.+.. .+.++||.|||+||++|+. .|.++++|.++.+.+.|++||+++++.++++|+|.++ ||+++|+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~i--PTf~~fk 76 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDP--PTVMFFF 76 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCC--CEEEEEE
Confidence 4678777764 5669999999999999999 9999999999988899999999999999999999999 9999994
No 85
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.1e-15 Score=134.92 Aligned_cols=69 Identities=58% Similarity=0.912 Sum_probs=63.5
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC---hHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN---KAAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
..|+|+||||.++|+..+|++|||++++++|||+++. .++.++|+.|+.||.+|+|.++|+.||.-|.-
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 4699999999999999999999999999999999963 46889999999999999999999999986543
No 86
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.57 E-value=1.4e-14 Score=118.67 Aligned_cols=93 Identities=13% Similarity=0.172 Sum_probs=77.2
Q ss_pred ChhhHHHHhhcC-CcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccch---hhHhHhCCccCCCcEEEEe
Q 013319 205 NLQVFKKEIVEK-GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEA---SLCKELGVHRPRSPRIFAY 279 (445)
Q Consensus 205 t~~~f~~~v~~~-~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~---~lc~~~~I~~~~~Pti~~f 279 (445)
|.++|++.+.+. ++++||.|||+||++|+. .|.++++++++ ..+.|+.||++++. .++++++|+++ ||+++|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~--Pt~~~~ 78 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEV--PHFLFY 78 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcC--CEEEEE
Confidence 467888877654 679999999999999999 99999999999 67899999999874 89999999999 999999
Q ss_pred ccCCCCCCC-eeeecCcccHHHHHHHHH
Q 013319 280 SYKAGDKGS-LVEYNEHLVAKNLKSFCR 306 (445)
Q Consensus 280 ~~~~~~~g~-~~~y~g~~~~~~l~~fi~ 306 (445)
++|+ +..+.|. ..++|.+-+.
T Consensus 79 -----~~G~~v~~~~G~-~~~~l~~~~~ 100 (103)
T cd02985 79 -----KDGEKIHEEEGI-GPDELIGDVL 100 (103)
T ss_pred -----eCCeEEEEEeCC-CHHHHHHHHH
Confidence 3454 4457775 5677766554
No 87
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.57 E-value=1.2e-14 Score=121.10 Aligned_cols=77 Identities=25% Similarity=0.404 Sum_probs=70.6
Q ss_pred cccccChhhHHHHhhcCC--cEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEE
Q 013319 200 NIRALNLQVFKKEIVEKG--MTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRI 276 (445)
Q Consensus 200 ~V~~Lt~~~f~~~v~~~~--~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti 276 (445)
.|.+++.++|.+.|.+.+ .+++|.||+|||++|+. .|.++++|+++. .++|++||++++ .++++++|.++ ||+
T Consensus 5 ~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~-~l~~~~~i~~~--Pt~ 80 (113)
T cd02957 5 EVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA-FLVNYLDIKVL--PTL 80 (113)
T ss_pred eEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh-HHHHhcCCCcC--CEE
Confidence 378899999999887763 79999999999999999 999999999986 489999999999 99999999999 999
Q ss_pred EEec
Q 013319 277 FAYS 280 (445)
Q Consensus 277 ~~f~ 280 (445)
++|.
T Consensus 81 ~~f~ 84 (113)
T cd02957 81 LVYK 84 (113)
T ss_pred EEEE
Confidence 9993
No 88
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.57 E-value=1.2e-13 Score=130.93 Aligned_cols=218 Identities=17% Similarity=0.258 Sum_probs=141.0
Q ss_pred CCCCCcccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHH------HHH-HHHhcC-ccEEEEEeCccchhhHhH
Q 013319 195 RSSSGNIRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVI------EEV-ANSMEG-ALKVGSINCETEASLCKE 265 (445)
Q Consensus 195 ~~~~~~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~------~~~-a~~l~~-~v~~~~Vdc~~~~~lc~~ 265 (445)
|+..+.|++||.+||++.+ ++.+..+|.||.|--.+ +. ...| -++ |+.+.. .|.||.||..++..++++
T Consensus 30 YDGkDRVi~LneKNfk~~l-Kkyd~l~l~yh~p~~~d-k~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKK 107 (383)
T PF01216_consen 30 YDGKDRVIDLNEKNFKRAL-KKYDVLVLYYHEPVESD-KVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKK 107 (383)
T ss_dssp -SSS--CEEE-TTTHHHHH-HH-SEEEEEEE--STSS-HHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHH
T ss_pred CCCccceEEcchhHHHHHH-HhhcEEEEEEecCCccC-HHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHh
Confidence 5556779999999998854 55557888888887432 22 2233 233 444443 799999999999999999
Q ss_pred hCCccCCCcEEEEeccCCCCCCCeeeecCcccHHHHHHHHHhhCCCCceeccccc-cchhhhccCCCCEEEE-EecCCC-
Q 013319 266 LGVHRPRSPRIFAYSYKAGDKGSLVEYNEHLVAKNLKSFCRDHLPRFSKRISLNR-IEFTFDAKARLPSVLL-LSTKKE- 342 (445)
Q Consensus 266 ~~I~~~~~Pti~~f~~~~~~~g~~~~y~g~~~~~~l~~fi~~~lp~~~~~i~~~~-~~~~~~~~~~~~~vvl-F~~~~~- 342 (445)
+|+... ++|.+| .++..+.|.|.++++.|++||...+...+.+++.+. ...+....+ .+++|- |....+
T Consensus 108 Lgv~E~--~SiyVf-----kd~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied-~~klIGyFk~~~s~ 179 (383)
T PF01216_consen 108 LGVEEE--GSIYVF-----KDGEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIED-DIKLIGYFKSEDSE 179 (383)
T ss_dssp HT--ST--TEEEEE-----ETTEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--S-S-EEEEE-SSTTSH
T ss_pred cCcccc--CcEEEE-----ECCcEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhccc-ceeEEEEeCCCCcH
Confidence 999999 999999 678899999999999999999999998888887654 332333333 366665 444333
Q ss_pred ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEcc-CCccccccccc-ChhhHHHHHHHHHhhhhhhh
Q 013319 343 TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLS-NGEKDVLKTGI-SVKDQKSSIHELSKLLDGLK 420 (445)
Q Consensus 343 ~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~ 420 (445)
....|..+|..|...++|..+ .++.++++++++ .-.+-.|.+ -.++..+.+.. +..++ ..|+
T Consensus 180 ~yk~FeeAAe~F~p~IkFfAt----fd~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e~e~-----------~~fi 243 (383)
T PF01216_consen 180 HYKEFEEAAEHFQPYIKFFAT----FDKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTEEEL-----------VEFI 243 (383)
T ss_dssp HHHHHHHHHHHCTTTSEEEEE-----SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--HHHH-----------HHHH
T ss_pred HHHHHHHHHHhhcCceeEEEE----ecchhhhhcCcc-ccceeeeccccCCCccCCCCCCCHHHH-----------HHHH
Confidence 467788999999999998544 579999999997 777887777 34444444432 23444 5566
Q ss_pred hcccccccCCCccchhcc
Q 013319 421 KRTKRQLPHGLANHIVIQ 438 (445)
Q Consensus 421 ~~n~~~~~~~l~~~~~~~ 438 (445)
..++++..-+|+.+.+++
T Consensus 244 ~~h~rptlrkl~~~~m~e 261 (383)
T PF01216_consen 244 EEHKRPTLRKLRPEDMFE 261 (383)
T ss_dssp HHT-S-SEEE--GGGHHH
T ss_pred HHhchhHhhhCChhhhhh
Confidence 678888888888888774
No 89
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.57 E-value=1.4e-14 Score=118.50 Aligned_cols=94 Identities=14% Similarity=0.144 Sum_probs=79.5
Q ss_pred cChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCccchhhHhHhCCccCCCcEEEEecc
Q 013319 204 LNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCETEASLCKELGVHRPRSPRIFAYSY 281 (445)
Q Consensus 204 Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~ 281 (445)
-|.++|+..+ +++.+++|.|||+||++|+. .|.++++++.+++ .+.|+.||++ +..++++|+|+.+ ||+++|
T Consensus 5 ~~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~--Pt~~~~-- 78 (102)
T cd02948 5 NNQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCE--PTFLFY-- 78 (102)
T ss_pred cCHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcC--cEEEEE--
Confidence 4678897754 66789999999999999999 9999999999985 5899999999 7889999999999 999999
Q ss_pred CCCCCCCeee-ecCcccHHHHHHHHHh
Q 013319 282 KAGDKGSLVE-YNEHLVAKNLKSFCRD 307 (445)
Q Consensus 282 ~~~~~g~~~~-y~g~~~~~~l~~fi~~ 307 (445)
.+|+.+. ..| .+.+.|.++|.+
T Consensus 79 ---~~g~~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 79 ---KNGELVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred ---ECCEEEEEEec-CChHHHHHHHhh
Confidence 4565554 445 478888888864
No 90
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.56 E-value=4.4e-15 Score=109.01 Aligned_cols=57 Identities=60% Similarity=0.984 Sum_probs=53.9
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCC--ChHHHHHHHHHHHHHHHcCCHH
Q 013319 30 VDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNK--NKAAQEKFAEINNAYDILSDEE 86 (445)
Q Consensus 30 ~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~~~f~~i~~Ay~~L~d~~ 86 (445)
.|||+||||+++++.++|+++|+++++.+|||++. .+.+.+.|.+|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 48999999999999999999999999999999998 5788999999999999999974
No 91
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.56 E-value=1.8e-14 Score=117.74 Aligned_cols=94 Identities=14% Similarity=0.197 Sum_probs=82.2
Q ss_pred ccccChhhHHHHhhcCCcEEEEEEECCC--CccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEE
Q 013319 201 IRALNLQVFKKEIVEKGMTWLLFFYSPS--SNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIF 277 (445)
Q Consensus 201 V~~Lt~~~f~~~v~~~~~~~lV~Fyap~--C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~ 277 (445)
..+++..||++.+ ..+.+.+|.||++| |++|+. .|+++++|+++.+.+.|++||+++++.++.+|+|+++ ||++
T Consensus 12 ~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sI--PTli 88 (111)
T cd02965 12 WPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRT--PALL 88 (111)
T ss_pred CcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcC--CEEE
Confidence 5678999998655 67778999999997 999999 9999999999999999999999999999999999999 9999
Q ss_pred EeccCCCCCCCee-eecCcccHHHHH
Q 013319 278 AYSYKAGDKGSLV-EYNEHLVAKNLK 302 (445)
Q Consensus 278 ~f~~~~~~~g~~~-~y~g~~~~~~l~ 302 (445)
+| ++|+.+ ...|..+.+++.
T Consensus 89 ~f-----kdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 89 FF-----RDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EE-----ECCEEEEEEeCccCHHHHh
Confidence 99 455444 467877777664
No 92
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.54 E-value=1.2e-14 Score=104.67 Aligned_cols=54 Identities=59% Similarity=0.998 Sum_probs=51.7
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC-hHHHHHHHHHHHHHHHcCC
Q 013319 31 DLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN-KAAQEKFAEINNAYDILSD 84 (445)
Q Consensus 31 d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~-~~~~~~f~~i~~Ay~~L~d 84 (445)
|||+||||+++++.++|+++|+++++++|||++.. +.+.+.|.+|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999987 7789999999999999986
No 93
>PTZ00102 disulphide isomerase; Provisional
Probab=99.51 E-value=4.7e-14 Score=146.92 Aligned_cols=109 Identities=17% Similarity=0.269 Sum_probs=97.0
Q ss_pred CCcccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC--ccEEEEEeCccchhhHhHhCCccCCCc
Q 013319 198 SGNIRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG--ALKVGSINCETEASLCKELGVHRPRSP 274 (445)
Q Consensus 198 ~~~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~--~v~~~~Vdc~~~~~lc~~~~I~~~~~P 274 (445)
+..|..|+.++|++.|.+.++++||.||||||++|+. .|.|+++|+.+.. .+.++.|||+.+..+|++++|+++ |
T Consensus 356 ~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~--P 433 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAF--P 433 (477)
T ss_pred CCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCccc--C
Confidence 4568899999999988888899999999999999999 9999999999875 689999999999999999999999 9
Q ss_pred EEEEeccCCCCCCCeeeecCcccHHHHHHHHHhhCCC
Q 013319 275 RIFAYSYKAGDKGSLVEYNEHLVAKNLKSFCRDHLPR 311 (445)
Q Consensus 275 ti~~f~~~~~~~g~~~~y~g~~~~~~l~~fi~~~lp~ 311 (445)
|+++|+.+. ..++.|.|.++.+.|.+||.++...
T Consensus 434 t~~~~~~~~---~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 434 TILFVKAGE---RTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred eEEEEECCC---cceeEecCcCCHHHHHHHHHHcCCC
Confidence 999995432 2356799999999999999988763
No 94
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.51 E-value=6.4e-14 Score=113.12 Aligned_cols=93 Identities=17% Similarity=0.265 Sum_probs=77.5
Q ss_pred ChhhHHHHhhcC-CcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEeccC
Q 013319 205 NLQVFKKEIVEK-GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYSYK 282 (445)
Q Consensus 205 t~~~f~~~v~~~-~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~~ 282 (445)
+.++|++.+... +++++|.||++||++|+. .|.++++++++...+.+++||+++++.++++++|..+ ||+++|
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~--Pt~~~~--- 75 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAV--PTFVFF--- 75 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccc--cEEEEE---
Confidence 356787776655 479999999999999999 9999999999877899999999999999999999999 999999
Q ss_pred CCCCCCeee-ecCcccHHHHHHHH
Q 013319 283 AGDKGSLVE-YNEHLVAKNLKSFC 305 (445)
Q Consensus 283 ~~~~g~~~~-y~g~~~~~~l~~fi 305 (445)
.+|+.+. ..|. +.++|.+.|
T Consensus 76 --~~g~~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 76 --RNGTIVDRVSGA-DPKELAKKV 96 (97)
T ss_pred --ECCEEEEEEeCC-CHHHHHHhh
Confidence 3455554 4453 667777655
No 95
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.4e-13 Score=112.52 Aligned_cols=86 Identities=14% Similarity=0.138 Sum_probs=72.4
Q ss_pred hhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEeccCCCCCCC-ee
Q 013319 213 IVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYSYKAGDKGS-LV 290 (445)
Q Consensus 213 v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~~~~~~g~-~~ 290 (445)
....+++++|.|||+||++|+. +|.++++|.++.+ +.|.+||+++...+|++++|+.. ||+++| ++|+ ..
T Consensus 17 ~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~--PTf~f~-----k~g~~~~ 88 (106)
T KOG0907|consen 17 AEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAM--PTFVFY-----KGGEEVD 88 (106)
T ss_pred hhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEe--eEEEEE-----ECCEEEE
Confidence 3344579999999999999999 9999999999988 99999999999999999999999 999999 4453 44
Q ss_pred eecCcccHHHHHHHHHh
Q 013319 291 EYNEHLVAKNLKSFCRD 307 (445)
Q Consensus 291 ~y~g~~~~~~l~~fi~~ 307 (445)
.+.|. +.+.|.+.+.+
T Consensus 89 ~~vGa-~~~~l~~~i~~ 104 (106)
T KOG0907|consen 89 EVVGA-NKAELEKKIAK 104 (106)
T ss_pred EEecC-CHHHHHHHHHh
Confidence 56666 55577776654
No 96
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.5e-14 Score=129.30 Aligned_cols=70 Identities=39% Similarity=0.682 Sum_probs=66.3
Q ss_pred hcCCCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhhhc
Q 013319 25 AKAKTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLY 94 (445)
Q Consensus 25 ~~~~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~ 94 (445)
.-+...|+|+||||+++++..||.+|||+|++++|||++.++...+.|+.|.+||++|.|.+.|..||-+
T Consensus 28 LYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 28 LYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred hcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence 3567899999999999999999999999999999999999988889999999999999999999999964
No 97
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.50 E-value=3.3e-14 Score=147.35 Aligned_cols=69 Identities=54% Similarity=0.903 Sum_probs=65.6
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCCC
Q 013319 30 VDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDEK 98 (445)
Q Consensus 30 ~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~ 98 (445)
.|||+||||+++|+.++||+|||+|++++|||++..+.+.++|++|++||++|+||.+|+.||.||...
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG 70 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDG 70 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence 699999999999999999999999999999999988788889999999999999999999999998753
No 98
>PHA03102 Small T antigen; Reviewed
Probab=99.50 E-value=2.9e-14 Score=122.90 Aligned_cols=67 Identities=27% Similarity=0.452 Sum_probs=61.5
Q ss_pred CcCcccccCCCCCC--CHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCCC
Q 013319 29 TVDLYKVLGVERNA--SQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDEK 98 (445)
Q Consensus 29 ~~d~y~vLgv~~~a--~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~ 98 (445)
...+|+||||+++| |.++||+|||++++++|||++++ .++|++|++||++|+|+.+|..||.+|...
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~---~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~ 72 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD---EEKMKELNTLYKKFRESVKSLRDLDGEEDS 72 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch---hHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence 35689999999999 99999999999999999999754 579999999999999999999999998663
No 99
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.1e-13 Score=139.94 Aligned_cols=185 Identities=14% Similarity=0.192 Sum_probs=130.4
Q ss_pred cccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhc--CccEEEEEeCccchhhHhHhCCccCCCcEE
Q 013319 200 NIRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSME--GALKVGSINCETEASLCKELGVHRPRSPRI 276 (445)
Q Consensus 200 ~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~--~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti 276 (445)
.|.+|+..+|...+.+.+..|+|.||+|||+||+. +|+|++++..++ ..+.++++||+.+..+|.+++|..| ||+
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~--Pt~ 222 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGY--PTL 222 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCC--ceE
Confidence 48999999999989999999999999999999999 999999999996 5899999999999999999999999 999
Q ss_pred EEeccCCCCCCCeeeecCcccHHHHHHHHHhhCCCC---ceeccccccc-----------hhhhccCCCCEEEEEec---
Q 013319 277 FAYSYKAGDKGSLVEYNEHLVAKNLKSFCRDHLPRF---SKRISLNRIE-----------FTFDAKARLPSVLLLST--- 339 (445)
Q Consensus 277 ~~f~~~~~~~g~~~~y~g~~~~~~l~~fi~~~lp~~---~~~i~~~~~~-----------~~~~~~~~~~~vvlF~~--- 339 (445)
++|+.+.. -...|.+.++.+.|++|+.+..... ..+.+..+.+ ++........+++-|..
T Consensus 223 ~~f~~~~~---~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 299 (383)
T KOG0191|consen 223 KLFPPGEE---DIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSLEKKKNKFVKFYAPWC 299 (383)
T ss_pred EEecCCCc---ccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhhHHhhhhHhhhhcchh
Confidence 99954321 2466889999999999999876652 1111111100 00000011112222221
Q ss_pred --CCCChHHHHHHHHH---hhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccC
Q 013319 340 --KKETPIIWRVLSGM---YHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSN 390 (445)
Q Consensus 340 --~~~~~~~~~~lA~~---~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~ 390 (445)
.....+.|...|.. ....+.+..+... .-..+|.+..++.+|++.++...
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 354 (383)
T KOG0191|consen 300 GHCGGFAPVYEDKAELGYPDLSKIKAAKLDCA-LLKSLCQKAIVRGYPTIKLYNYG 354 (383)
T ss_pred hcccccchhHHHHHhccccccccceeeccccc-cccchhhHhhhhcCceeEeeccc
Confidence 22346777777776 3344444332211 22448999999999999965543
No 100
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.48 E-value=1.8e-13 Score=113.86 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=68.6
Q ss_pred ccccCh-hhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEE
Q 013319 201 IRALNL-QVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 201 V~~Lt~-~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~ 278 (445)
|.+++. ++|.+.+. ++.+++|.||+|||++|+. .|.++++++++. .++|.+||+++++.++++++|..+ ||+++
T Consensus 6 v~~i~~~~~~~~~i~-~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~~l~~~~~v~~v--Pt~l~ 81 (113)
T cd02989 6 YREVSDEKEFFEIVK-SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAPFLVEKLNIKVL--PTVIL 81 (113)
T ss_pred eEEeCCHHHHHHHHh-CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCHHHHHHCCCccC--CEEEE
Confidence 677766 88977764 4568999999999999999 999999999985 489999999999999999999999 99999
Q ss_pred ecc
Q 013319 279 YSY 281 (445)
Q Consensus 279 f~~ 281 (445)
|.+
T Consensus 82 fk~ 84 (113)
T cd02989 82 FKN 84 (113)
T ss_pred EEC
Confidence 943
No 101
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=7.4e-14 Score=135.06 Aligned_cols=68 Identities=54% Similarity=0.821 Sum_probs=63.8
Q ss_pred cCCCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--hHHHHHHHHHHHHHHHcCCHHHHHHhhh
Q 013319 26 KAKTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN--KAAQEKFAEINNAYDILSDEEKRKNYDL 93 (445)
Q Consensus 26 ~~~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~yd~ 93 (445)
.++..|||.|||+.+.++..||++|||++++.||||++.. .+++.+|+++.+||.+|+||.+|.+||.
T Consensus 369 kSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds 438 (486)
T KOG0550|consen 369 KSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS 438 (486)
T ss_pred HhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc
Confidence 4568999999999999999999999999999999999984 5788899999999999999999999996
No 102
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.46 E-value=3.2e-13 Score=115.55 Aligned_cols=102 Identities=7% Similarity=0.061 Sum_probs=79.7
Q ss_pred cccc-ChhhHHHHhhcC-CcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEE
Q 013319 201 IRAL-NLQVFKKEIVEK-GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIF 277 (445)
Q Consensus 201 V~~L-t~~~f~~~v~~~-~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~ 277 (445)
|.+| +.++|++.|... +++++|.|||+||++|+. .|.++++|+++.+.+.|++||++++++++.+|+|++. |+++
T Consensus 5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~--~t~~ 82 (142)
T PLN00410 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDP--CTVM 82 (142)
T ss_pred HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCC--CcEE
Confidence 3344 467898888744 569999999999999999 9999999999998999999999999999999999966 6666
Q ss_pred -EeccCCCCCCC-eee-ecC--------cccHHHHHHHHHhhC
Q 013319 278 -AYSYKAGDKGS-LVE-YNE--------HLVAKNLKSFCRDHL 309 (445)
Q Consensus 278 -~f~~~~~~~g~-~~~-y~g--------~~~~~~l~~fi~~~l 309 (445)
+|. +|+ .+. ..| ..+.++|.+-+...+
T Consensus 83 ~ffk-----~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 83 FFFR-----NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred EEEE-----CCeEEEEEecccccccccccCCHHHHHHHHHHHH
Confidence 773 444 333 455 345566766665443
No 103
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.46 E-value=3e-13 Score=109.41 Aligned_cols=90 Identities=14% Similarity=0.320 Sum_probs=79.0
Q ss_pred HHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEeccCCCCCC
Q 013319 209 FKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYSYKAGDKG 287 (445)
Q Consensus 209 f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~~~~~~g 287 (445)
.+..+.+.+++++|.||++||+.|+. .|.++++++++.+.+.+..||++++++++++++|.++ |++++|+ +|
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~v--Pt~~i~~-----~g 77 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGT--PTVQFFK-----DK 77 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeec--cEEEEEE-----CC
Confidence 34556778889999999999999999 9999999999988899999999999999999999999 9999993 34
Q ss_pred C-eeeecCcccHHHHHHHH
Q 013319 288 S-LVEYNEHLVAKNLKSFC 305 (445)
Q Consensus 288 ~-~~~y~g~~~~~~l~~fi 305 (445)
+ ...+.|..+.++|.+|+
T Consensus 78 ~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 78 ELVKEISGVKMKSEYREFI 96 (97)
T ss_pred eEEEEEeCCccHHHHHHhh
Confidence 3 44588888889998886
No 104
>PTZ00051 thioredoxin; Provisional
Probab=99.46 E-value=2.9e-13 Score=109.56 Aligned_cols=92 Identities=12% Similarity=0.200 Sum_probs=74.3
Q ss_pred ccccC-hhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEE
Q 013319 201 IRALN-LQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 201 V~~Lt-~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~ 278 (445)
|.+++ .++|++ +++.+.+++|.||++||++|+. .|.|+++++++. .+.++.|||+++..++++++|.++ ||+++
T Consensus 2 v~~i~~~~~~~~-~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~--Pt~~~ 77 (98)
T PTZ00051 2 VHIVTSQAEFES-TLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEVAEKENITSM--PTFKV 77 (98)
T ss_pred eEEecCHHHHHH-HHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHHHHHHCCCcee--eEEEE
Confidence 44554 456655 5677789999999999999999 999999999875 489999999999999999999999 99999
Q ss_pred eccCCCCCCCee-eecCcccHHHHH
Q 013319 279 YSYKAGDKGSLV-EYNEHLVAKNLK 302 (445)
Q Consensus 279 f~~~~~~~g~~~-~y~g~~~~~~l~ 302 (445)
| .+|+.+ .+.|. ..++|.
T Consensus 78 ~-----~~g~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 78 F-----KNGSVVDTLLGA-NDEALK 96 (98)
T ss_pred E-----eCCeEEEEEeCC-CHHHhh
Confidence 9 345444 46664 555554
No 105
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.43 E-value=3.6e-13 Score=110.41 Aligned_cols=93 Identities=16% Similarity=0.199 Sum_probs=77.6
Q ss_pred hhHHHHhhcCCcEEEEEEECCCCccCCC-hhHH---HHHHHHhcCccEEEEEeCcc----chhhHhHhCCccCCCcEEEE
Q 013319 207 QVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVI---EEVANSMEGALKVGSINCET----EASLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 207 ~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~---~~~a~~l~~~v~~~~Vdc~~----~~~lc~~~~I~~~~~Pti~~ 278 (445)
+.|++. .++++++||.||++||++|+. .|.+ +++++.+.+.+.++.||+++ ...++++++|.++ ||+++
T Consensus 2 ~~~~~~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~--Pti~~ 78 (104)
T cd02953 2 AALAQA-LAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGP--PTYLF 78 (104)
T ss_pred HHHHHH-HHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCC--CEEEE
Confidence 456554 466789999999999999999 9888 68888888789999999987 5789999999999 99999
Q ss_pred eccCCCCCC-CeeeecCcccHHHHHHHH
Q 013319 279 YSYKAGDKG-SLVEYNEHLVAKNLKSFC 305 (445)
Q Consensus 279 f~~~~~~~g-~~~~y~g~~~~~~l~~fi 305 (445)
|..+ +| .+..+.|..+.++|.+++
T Consensus 79 ~~~~---~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 79 YGPG---GEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred ECCC---CCCCCcccccccCHHHHHHHh
Confidence 9421 23 456688999999998876
No 106
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.43 E-value=6.7e-13 Score=115.08 Aligned_cols=98 Identities=9% Similarity=0.025 Sum_probs=80.4
Q ss_pred hhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccc--hhhHhHhCCccCCCcEEEEeccC
Q 013319 206 LQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETE--ASLCKELGVHRPRSPRIFAYSYK 282 (445)
Q Consensus 206 ~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~--~~lc~~~~I~~~~~Pti~~f~~~ 282 (445)
...|+. ++..++++||.|||+||++|+. .|.++++++++.+.+.|+.||++.+ ..++++|+|.++ ||+++|.
T Consensus 10 ~~~~~~-a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~i--Pt~v~~~-- 84 (142)
T cd02950 10 STPPEV-ALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGI--PHFVFLD-- 84 (142)
T ss_pred cCCHHH-HHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCC--CEEEEEC--
Confidence 344644 4567789999999999999999 9999999999987788888887765 588999999999 9999993
Q ss_pred CCCCCCee-eecCcccHHHHHHHHHhhCC
Q 013319 283 AGDKGSLV-EYNEHLVAKNLKSFCRDHLP 310 (445)
Q Consensus 283 ~~~~g~~~-~y~g~~~~~~l~~fi~~~lp 310 (445)
.+|+.+ .+.|....++|.+++...+.
T Consensus 85 --~~G~~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 85 --REGNEEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred --CCCCEEEEEeCCCCHHHHHHHHHHHHc
Confidence 245544 47788888889998887664
No 107
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.41 E-value=8.8e-13 Score=118.23 Aligned_cols=98 Identities=21% Similarity=0.351 Sum_probs=80.0
Q ss_pred ccccCh-hhHHHHhhcCC--cEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEE
Q 013319 201 IRALNL-QVFKKEIVEKG--MTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRI 276 (445)
Q Consensus 201 V~~Lt~-~~f~~~v~~~~--~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti 276 (445)
|.+++. ++|.+.|.+.+ .+++|.||+|||++|+. .|.++++|.++. .++|++||+++. .++.+|+|..+ |||
T Consensus 64 v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~v--PTl 139 (175)
T cd02987 64 VYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDAL--PAL 139 (175)
T ss_pred EEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCC--CEE
Confidence 788888 99988887654 38999999999999999 999999999985 699999999987 89999999999 999
Q ss_pred EEeccCCCCCCCeee-ecC-------cccHHHHHHHHHh
Q 013319 277 FAYSYKAGDKGSLVE-YNE-------HLVAKNLKSFCRD 307 (445)
Q Consensus 277 ~~f~~~~~~~g~~~~-y~g-------~~~~~~l~~fi~~ 307 (445)
++|. +|+.+. +.| ..+.+.|..++.+
T Consensus 140 llyk-----~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 140 LVYK-----GGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred EEEE-----CCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 9993 454332 222 3456777776654
No 108
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.39 E-value=1e-12 Score=107.42 Aligned_cols=73 Identities=5% Similarity=0.074 Sum_probs=66.2
Q ss_pred hhhHHHHhhcC-CcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEec
Q 013319 206 LQVFKKEIVEK-GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYS 280 (445)
Q Consensus 206 ~~~f~~~v~~~-~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~ 280 (445)
.+.|++.+.+. +++++|.|+|+||++|+. .|.++++|++++..+.|++||+++.++++++|+|... ||+++|.
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~am--Ptfvffk 76 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYI--PSTIFFF 76 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeC--cEEEEEE
Confidence 35677777655 679999999999999999 9999999999987799999999999999999999999 9999983
No 109
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=5.6e-13 Score=124.22 Aligned_cols=68 Identities=56% Similarity=0.930 Sum_probs=63.5
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChH--HHHHHHHHHHHHHHcCCHHHHHHhhhcC
Q 013319 28 KTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKA--AQEKFAEINNAYDILSDEEKRKNYDLYG 95 (445)
Q Consensus 28 ~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~--~~~~f~~i~~Ay~~L~d~~~r~~yd~~g 95 (445)
...+||+||||+++|+..||++|||++++++|||+++... +.++|+.|++||++|+|+.+|..||..+
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 4689999999999999999999999999999999998543 8999999999999999999999999874
No 110
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.38 E-value=1.1e-12 Score=135.79 Aligned_cols=107 Identities=16% Similarity=0.257 Sum_probs=92.9
Q ss_pred CCcccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC---ccEEEEEeCccchhhHhHhCCccCCC
Q 013319 198 SGNIRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG---ALKVGSINCETEASLCKELGVHRPRS 273 (445)
Q Consensus 198 ~~~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~---~v~~~~Vdc~~~~~lc~~~~I~~~~~ 273 (445)
...|..|+.++|++.+.+.+.++||.||+|||++|+. .|.|+++|+.+.+ .+.++.|||+.+... . ++|.++
T Consensus 345 ~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~-~-~~i~~~-- 420 (462)
T TIGR01130 345 EGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVP-P-FEVEGF-- 420 (462)
T ss_pred CCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccC-C-CCcccc--
Confidence 4568899999999988888889999999999999999 9999999999997 799999999987533 3 999999
Q ss_pred cEEEEeccCCCCCCCeeeecCcccHHHHHHHHHhhCC
Q 013319 274 PRIFAYSYKAGDKGSLVEYNEHLVAKNLKSFCRDHLP 310 (445)
Q Consensus 274 Pti~~f~~~~~~~g~~~~y~g~~~~~~l~~fi~~~lp 310 (445)
||+++|+.+.. ..+..|.|.++.++|.+|+.++..
T Consensus 421 Pt~~~~~~~~~--~~~~~~~g~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 421 PTIKFVPAGKK--SEPVPYDGDRTLEDFSKFIAKHAT 455 (462)
T ss_pred CEEEEEeCCCC--cCceEecCcCCHHHHHHHHHhcCC
Confidence 99999965431 145789999999999999988764
No 111
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.37 E-value=2.7e-12 Score=101.43 Aligned_cols=89 Identities=19% Similarity=0.287 Sum_probs=75.6
Q ss_pred hHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEeccCCCCC
Q 013319 208 VFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYSYKAGDK 286 (445)
Q Consensus 208 ~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~~~~~~ 286 (445)
+|++.+.+. .+++|.||++||++|+. .+.++++++. .+.+.++.|||+.+..+++++++.++ |++++|. +
T Consensus 2 ~~~~~~~~~-~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~--P~~~~~~-----~ 72 (93)
T cd02947 2 EFEELIKSA-KPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSI--PTFLFFK-----N 72 (93)
T ss_pred chHHHHhcC-CcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccc--cEEEEEE-----C
Confidence 465544444 78999999999999999 9999999998 67899999999999999999999999 9999993 3
Q ss_pred CC-eeeecCcccHHHHHHHH
Q 013319 287 GS-LVEYNEHLVAKNLKSFC 305 (445)
Q Consensus 287 g~-~~~y~g~~~~~~l~~fi 305 (445)
|. ...+.|..+.+.|.+|+
T Consensus 73 g~~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 73 GKEVDRVVGADPKEELEEFL 92 (93)
T ss_pred CEEEEEEecCCCHHHHHHHh
Confidence 33 45577877778898886
No 112
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=7.9e-13 Score=129.43 Aligned_cols=68 Identities=34% Similarity=0.631 Sum_probs=65.3
Q ss_pred CCCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhhhc
Q 013319 27 AKTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLY 94 (445)
Q Consensus 27 ~~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~ 94 (445)
....|+|.+|||++++++++||+.||++|...|||||..+.|+|.|+.++.||++|+|+++|+.||.-
T Consensus 232 ~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 232 LNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred hcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 34799999999999999999999999999999999999999999999999999999999999999974
No 113
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.35 E-value=5.3e-12 Score=105.07 Aligned_cols=97 Identities=15% Similarity=0.224 Sum_probs=78.6
Q ss_pred hhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEeccCCCC
Q 013319 207 QVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYSYKAGD 285 (445)
Q Consensus 207 ~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~~~~~ 285 (445)
++|.+.+ .++...+|.||++||++|+. .|.+++++..+ +.+.+..||+++++.++++|+|.++ ||+++|..+..
T Consensus 13 ~~~~~~l-~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~v--Pt~~i~~~g~~- 87 (113)
T cd02975 13 EEFFKEM-KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERV--PTTIFLQDGGK- 87 (113)
T ss_pred HHHHHHh-CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcC--CEEEEEeCCee-
Confidence 3354544 44556888999999999999 99999999887 6799999999999999999999999 99999954321
Q ss_pred CCCeeeecCcccHHHHHHHHHhhC
Q 013319 286 KGSLVEYNEHLVAKNLKSFCRDHL 309 (445)
Q Consensus 286 ~g~~~~y~g~~~~~~l~~fi~~~l 309 (445)
. ..+.+.|.....++.+||...+
T Consensus 88 ~-~~~~~~G~~~~~el~~~i~~i~ 110 (113)
T cd02975 88 D-GGIRYYGLPAGYEFASLIEDIV 110 (113)
T ss_pred c-ceEEEEecCchHHHHHHHHHHH
Confidence 1 2346888878889999987654
No 114
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.35 E-value=2.1e-12 Score=114.17 Aligned_cols=65 Identities=31% Similarity=0.563 Sum_probs=57.3
Q ss_pred cCcccccCCCCC--CCHHHHHHHHHHHHHhhCCCCCCChH----HHHHHHHHHHHHHHcCCHHHHHHhhhc
Q 013319 30 VDLYKVLGVERN--ASQREIQKAFHKLSLQYHPDKNKNKA----AQEKFAEINNAYDILSDEEKRKNYDLY 94 (445)
Q Consensus 30 ~d~y~vLgv~~~--a~~~~ik~ayr~l~~~~hPd~~~~~~----~~~~f~~i~~Ay~~L~d~~~r~~yd~~ 94 (445)
.|||+||||++. ++..+|+++||++++++|||++.... +.+.+..|++||++|+||.+|..|+..
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~ 72 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL 72 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 689999999996 78999999999999999999987532 234588999999999999999999863
No 115
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.34 E-value=2.9e-12 Score=124.61 Aligned_cols=79 Identities=33% Similarity=0.677 Sum_probs=70.6
Q ss_pred cCCCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC------hHHHHHHHHHHHHHHHcCCHHHHHHhhhcCCCCC
Q 013319 26 KAKTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN------KAAQEKFAEINNAYDILSDEEKRKNYDLYGDEKG 99 (445)
Q Consensus 26 ~~~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~------~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 99 (445)
.....|||+||||+.+++..+||++||+|+.++||||-++ ...++.++.|++||+.|+|...|..|-.||+++.
T Consensus 94 ~~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~ 173 (610)
T COG5407 94 YRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDS 173 (610)
T ss_pred HHcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCC
Confidence 3467899999999999999999999999999999999775 3568899999999999999999999999999876
Q ss_pred CCCCC
Q 013319 100 SPGFD 104 (445)
Q Consensus 100 ~~~~~ 104 (445)
.++.+
T Consensus 174 pQhts 178 (610)
T COG5407 174 PQHTS 178 (610)
T ss_pred Ccccc
Confidence 65443
No 116
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=3.2e-12 Score=116.00 Aligned_cols=102 Identities=12% Similarity=0.153 Sum_probs=85.2
Q ss_pred cccc-ChhhHHHHhhcCC-cEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEE
Q 013319 201 IRAL-NLQVFKKEIVEKG-MTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIF 277 (445)
Q Consensus 201 V~~L-t~~~f~~~v~~~~-~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~ 277 (445)
|+.+ ++.+|..++...+ +.++|.|||.||++|++ +|+|+.+|.+|. ...|.+||+++.+..+..+||+.. ||++
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c~~taa~~gV~am--PTFi 79 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDECRGTAATNGVNAM--PTFI 79 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHhhchhhhcCcccC--ceEE
Confidence 4555 4567888776655 58999999999999999 999999999995 466999999999999999999999 9999
Q ss_pred EeccCCCCCCCeee-ecCcccHHHHHHHHHhhCCC
Q 013319 278 AYSYKAGDKGSLVE-YNEHLVAKNLKSFCRDHLPR 311 (445)
Q Consensus 278 ~f~~~~~~~g~~~~-y~g~~~~~~l~~fi~~~lp~ 311 (445)
+| .+|..+. ++|. ++..|.+-+.+++..
T Consensus 80 ff-----~ng~kid~~qGA-d~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 80 FF-----RNGVKIDQIQGA-DASGLEEKVAKYAST 108 (288)
T ss_pred EE-----ecCeEeeeecCC-CHHHHHHHHHHHhcc
Confidence 99 5564454 7776 888899888887653
No 117
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.33 E-value=2.5e-12 Score=114.44 Aligned_cols=64 Identities=31% Similarity=0.537 Sum_probs=57.1
Q ss_pred cCcccccCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCh------HHHHHHHHHHHHHHHcCCHHHHHHhhh
Q 013319 30 VDLYKVLGVERN--ASQREIQKAFHKLSLQYHPDKNKNK------AAQEKFAEINNAYDILSDEEKRKNYDL 93 (445)
Q Consensus 30 ~d~y~vLgv~~~--a~~~~ik~ayr~l~~~~hPd~~~~~------~~~~~f~~i~~Ay~~L~d~~~r~~yd~ 93 (445)
.|||+||||++. ++..+|+++||++++++|||+.... .+.+.+..|++||++|+||.+|..|+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 489999999996 6889999999999999999997632 256789999999999999999999985
No 118
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.32 E-value=4.8e-12 Score=103.29 Aligned_cols=87 Identities=22% Similarity=0.345 Sum_probs=74.9
Q ss_pred CcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCc--cCCCcEEEEeccCCCCCCCeeeec
Q 013319 217 GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVH--RPRSPRIFAYSYKAGDKGSLVEYN 293 (445)
Q Consensus 217 ~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~--~~~~Pti~~f~~~~~~~g~~~~y~ 293 (445)
+.+++|.|+++||++|+. .|.++++|+++++.+.|+.||++++..+++.++|. .+ |+++++... ++..+.+.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~--P~~~~~~~~---~~~k~~~~ 86 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDL--PVIAIINLS---DGKKYLMP 86 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhC--CEEEEEecc---cccccCCC
Confidence 568999999999999999 99999999999999999999999999999999999 88 999999542 24344454
Q ss_pred C-cccHHHHHHHHHhh
Q 013319 294 E-HLVAKNLKSFCRDH 308 (445)
Q Consensus 294 g-~~~~~~l~~fi~~~ 308 (445)
+ ..+.++|.+|+.+.
T Consensus 87 ~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 87 EEELTAESLEEFVEDF 102 (103)
T ss_pred ccccCHHHHHHHHHhh
Confidence 4 44889999999764
No 119
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.29 E-value=6.5e-12 Score=111.45 Aligned_cols=66 Identities=23% Similarity=0.405 Sum_probs=59.1
Q ss_pred CCcCcccccCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCh------HHHHHHHHHHHHHHHcCCHHHHHHhhh
Q 013319 28 KTVDLYKVLGVERN--ASQREIQKAFHKLSLQYHPDKNKNK------AAQEKFAEINNAYDILSDEEKRKNYDL 93 (445)
Q Consensus 28 ~~~d~y~vLgv~~~--a~~~~ik~ayr~l~~~~hPd~~~~~------~~~~~f~~i~~Ay~~L~d~~~r~~yd~ 93 (445)
+..|||++|||++. .+..+|+++||++++++|||++... .+.+.+..|++||++|+||.+|..|+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 46899999999997 6789999999999999999998642 256779999999999999999999996
No 120
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.29 E-value=1.8e-11 Score=95.42 Aligned_cols=79 Identities=27% Similarity=0.332 Sum_probs=70.0
Q ss_pred EEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEeccCCCCCCCeeeecCcccH
Q 013319 220 WLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYSYKAGDKGSLVEYNEHLVA 298 (445)
Q Consensus 220 ~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g~~~~ 298 (445)
.++.||++||++|+. .|.+++++++++..+.+..||++++++++++++|.++ ||+++ +|. ..+.|..+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~v--Pt~~~-------~g~-~~~~G~~~~ 71 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAV--PAIVI-------NGD-VEFIGAPTK 71 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccC--CEEEE-------CCE-EEEecCCCH
Confidence 478899999999999 9999999999987899999999999999999999999 99986 232 478888888
Q ss_pred HHHHHHHHhh
Q 013319 299 KNLKSFCRDH 308 (445)
Q Consensus 299 ~~l~~fi~~~ 308 (445)
++|.+++.+.
T Consensus 72 ~~l~~~l~~~ 81 (82)
T TIGR00411 72 EELVEAIKKR 81 (82)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 121
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.28 E-value=1.3e-11 Score=112.24 Aligned_cols=96 Identities=14% Similarity=0.198 Sum_probs=77.4
Q ss_pred ccccChhhHHHHhhcCC--cEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEE
Q 013319 201 IRALNLQVFKKEIVEKG--MTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIF 277 (445)
Q Consensus 201 V~~Lt~~~f~~~v~~~~--~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~ 277 (445)
|.+++.++|...|.+.+ .++||.||++||++|+. .|.|+++|.++. .++|++||++.. +.+|+|+.+ |||+
T Consensus 84 v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~---~~~~~i~~l--PTll 157 (192)
T cd02988 84 VYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQC---IPNYPDKNL--PTIL 157 (192)
T ss_pred EEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HhhCCCCCC--CEEE
Confidence 78999999998887664 38999999999999999 999999999985 689999999753 588999999 9999
Q ss_pred EeccCCCCCCCeee-ecC-------cccHHHHHHHHHh
Q 013319 278 AYSYKAGDKGSLVE-YNE-------HLVAKNLKSFCRD 307 (445)
Q Consensus 278 ~f~~~~~~~g~~~~-y~g-------~~~~~~l~~fi~~ 307 (445)
+| .+|..+. +.| ..+.+.|..++.+
T Consensus 158 iy-----k~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 158 VY-----RNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EE-----ECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 99 4454332 333 3456777766653
No 122
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.27 E-value=1.1e-11 Score=110.59 Aligned_cols=66 Identities=26% Similarity=0.399 Sum_probs=57.5
Q ss_pred CCcCcccccCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCh-H-----HHHHHHHHHHHHHHcCCHHHHHHhhh
Q 013319 28 KTVDLYKVLGVERN--ASQREIQKAFHKLSLQYHPDKNKNK-A-----AQEKFAEINNAYDILSDEEKRKNYDL 93 (445)
Q Consensus 28 ~~~d~y~vLgv~~~--a~~~~ik~ayr~l~~~~hPd~~~~~-~-----~~~~f~~i~~Ay~~L~d~~~r~~yd~ 93 (445)
...|||+||||++. ++..+|+++||++++++|||++... . +.+.+..||+||++|+||.+|..|+.
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 45899999999995 6899999999999999999998642 2 34457899999999999999999995
No 123
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.26 E-value=3.2e-11 Score=101.66 Aligned_cols=96 Identities=13% Similarity=0.153 Sum_probs=74.3
Q ss_pred ccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccch-----------hhHhHhCC
Q 013319 201 IRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEA-----------SLCKELGV 268 (445)
Q Consensus 201 V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~-----------~lc~~~~I 268 (445)
+..++.++|.+.+ .++...+|.|+++||++|+. .|.+++++++ ..+.+..||.+.+. ++.+++++
T Consensus 8 ~~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 8 LEVTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred ceecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence 5778889997765 45566899999999999999 9999999998 45778999988543 45566654
Q ss_pred ----ccCCCcEEEEeccCCCCCCCeee-ecC-cccHHHHHHHHH
Q 013319 269 ----HRPRSPRIFAYSYKAGDKGSLVE-YNE-HLVAKNLKSFCR 306 (445)
Q Consensus 269 ----~~~~~Pti~~f~~~~~~~g~~~~-y~g-~~~~~~l~~fi~ 306 (445)
.++ ||+++| .+|+.+. ..| ..+.++|.+|+.
T Consensus 85 ~~~i~~~--PT~v~~-----k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 85 PTSFMGT--PTFVHI-----TDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cccCCCC--CEEEEE-----eCCeEEEEEeCCCCCHHHHHHHhh
Confidence 458 999999 5565444 557 446889988863
No 124
>PTZ00062 glutaredoxin; Provisional
Probab=99.21 E-value=4.4e-10 Score=102.57 Aligned_cols=159 Identities=12% Similarity=0.063 Sum_probs=101.1
Q ss_pred ChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEeccCC
Q 013319 205 NLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYSYKA 283 (445)
Q Consensus 205 t~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~~~ 283 (445)
+.++|.+.+.......++.|+|+||+.|+. .|++.++++++ +.++|+.||.+ ++|.++ ||+++|
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~~d--------~~V~~v--Ptfv~~---- 69 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVNLA--------DANNEY--GVFEFY---- 69 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEccc--------cCcccc--eEEEEE----
Confidence 466787766544356899999999999999 99999999998 46999999977 999999 999999
Q ss_pred CCCCCeee-ecCcccHHHHHHHHHhhCCCCceeccccccchhhhccCCCCEEEEEecC----CCChHHHHHHHHHhhccc
Q 013319 284 GDKGSLVE-YNEHLVAKNLKSFCRDHLPRFSKRISLNRIEFTFDAKARLPSVLLLSTK----KETPIIWRVLSGMYHERL 358 (445)
Q Consensus 284 ~~~g~~~~-y~g~~~~~~l~~fi~~~lp~~~~~i~~~~~~~~~~~~~~~~~vvlF~~~----~~~~~~~~~lA~~~~~~~ 358 (445)
.+|+.+. +.|. ++.+|..++.++....... ...++........+ |++|... ..++.--++...--...+
T Consensus 70 -~~g~~i~r~~G~-~~~~~~~~~~~~~~~~~~~---~~~~~v~~li~~~~-Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i 143 (204)
T PTZ00062 70 -QNSQLINSLEGC-NTSTLVSFIRGWAQKGSSE---DTVEKIERLIRNHK-ILLFMKGSKTFPFCRFSNAVVNMLNSSGV 143 (204)
T ss_pred -ECCEEEeeeeCC-CHHHHHHHHHHHcCCCCHH---HHHHHHHHHHhcCC-EEEEEccCCCCCCChhHHHHHHHHHHcCC
Confidence 4555554 5665 7889999998876532110 11122222233344 5555542 233322222111112245
Q ss_pred eEEEEeecCCChH----HHHHcCCCCCCeEE
Q 013319 359 NFYDTEVHDVSDP----AVKKLGVDALPAIV 385 (445)
Q Consensus 359 ~f~~~~v~~~~~~----l~~~f~V~~~Ptlv 385 (445)
.|...++.. +++ +.+.-+-..+|.|.
T Consensus 144 ~y~~~DI~~-d~~~~~~l~~~sg~~TvPqVf 173 (204)
T PTZ00062 144 KYETYNIFE-DPDLREELKVYSNWPTYPQLY 173 (204)
T ss_pred CEEEEEcCC-CHHHHHHHHHHhCCCCCCeEE
Confidence 665555543 333 34445666789887
No 125
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.20 E-value=9.4e-11 Score=97.72 Aligned_cols=73 Identities=12% Similarity=0.179 Sum_probs=64.4
Q ss_pred ChhhHHHHhhcC-CcEEEEEEEC-------CCCccCCC-hhHHHHHHHHhcCccEEEEEeCcc-------chhhHhHhCC
Q 013319 205 NLQVFKKEIVEK-GMTWLLFFYS-------PSSNRDGY-ESVIEEVANSMEGALKVGSINCET-------EASLCKELGV 268 (445)
Q Consensus 205 t~~~f~~~v~~~-~~~~lV~Fya-------p~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~-------~~~lc~~~~I 268 (445)
+.++|.+.|... +.+++|.||| +||++|+. .|.+++++.++.+.+.|..||+++ +..+..+++|
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I 87 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL 87 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc
Confidence 456787777654 4799999999 99999999 999999999998779999999976 4589999999
Q ss_pred c-cCCCcEEEEe
Q 013319 269 H-RPRSPRIFAY 279 (445)
Q Consensus 269 ~-~~~~Pti~~f 279 (445)
. ++ ||+++|
T Consensus 88 ~~~i--PT~~~~ 97 (119)
T cd02952 88 TTGV--PTLLRW 97 (119)
T ss_pred ccCC--CEEEEE
Confidence 8 99 999999
No 126
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.20 E-value=5.5e-11 Score=100.78 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=75.7
Q ss_pred hHHHHhhcCC-cEEEEEEECCCCccCCC-hhHHH---HHHHHhcCccEEEEEeCccc-------------hhhHhHhCCc
Q 013319 208 VFKKEIVEKG-MTWLLFFYSPSSNRDGY-ESVIE---EVANSMEGALKVGSINCETE-------------ASLCKELGVH 269 (445)
Q Consensus 208 ~f~~~v~~~~-~~~lV~Fyap~C~~C~~-~p~~~---~~a~~l~~~v~~~~Vdc~~~-------------~~lc~~~~I~ 269 (445)
.+++ +++.+ ++++|.||++||++|+. .|.+. ++.+.+...+.+..||.+.+ ..++.+++|.
T Consensus 5 ~~~~-a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 5 DLAE-AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHH-HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 3433 45566 89999999999999999 88885 56667766788899998864 6899999999
Q ss_pred cCCCcEEEEeccCCCCC-CC-eeeecCcccHHHHHHHHHhhCC
Q 013319 270 RPRSPRIFAYSYKAGDK-GS-LVEYNEHLVAKNLKSFCRDHLP 310 (445)
Q Consensus 270 ~~~~Pti~~f~~~~~~~-g~-~~~y~g~~~~~~l~~fi~~~lp 310 (445)
++ ||+++|.. + |+ ...+.|..+.+.+.+++...+.
T Consensus 84 ~~--Pt~~~~~~----~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 84 FT--PTVIFLDP----EGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred cc--cEEEEEcC----CCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 99 99999942 3 33 3468888888888888876544
No 127
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.18 E-value=2.7e-11 Score=99.00 Aligned_cols=53 Identities=30% Similarity=0.496 Sum_probs=47.9
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcC
Q 013319 28 KTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILS 83 (445)
Q Consensus 28 ~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~ 83 (445)
...++|+||||+++++.+||+++||++++++|||++.+ .+.|++|++||++|.
T Consensus 63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs---~~~~~kIneAyevL~ 115 (116)
T PTZ00100 63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS---TYIASKVNEAKDLLL 115 (116)
T ss_pred CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHHh
Confidence 45799999999999999999999999999999999643 568899999999985
No 128
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.4e-11 Score=118.26 Aligned_cols=69 Identities=55% Similarity=0.955 Sum_probs=63.9
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCh--HHHHHHHHHHHHHHHcCCHHHHHHhhhcCCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNK--AAQEKFAEINNAYDILSDEEKRKNYDLYGDE 97 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 97 (445)
..|+|+||+|.++|+..+|++||++++++||||+++.. .+.++|.+|.+||++|+|+.+|..||++|+.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~ 72 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEE 72 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCcc
Confidence 47999999999999999999999999999999998866 5566899999999999999999999999984
No 129
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.9e-11 Score=109.17 Aligned_cols=123 Identities=28% Similarity=0.488 Sum_probs=90.9
Q ss_pred HHHHHhhhcCCCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHH-HcCCHHHHHHhh-hcC
Q 013319 18 STLLILNAKAKTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYD-ILSDEEKRKNYD-LYG 95 (445)
Q Consensus 18 ~~~~~~~~~~~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~-~L~d~~~r~~yd-~~g 95 (445)
.++.+..+..+-+.+|.||||..+|+.++++.||++|++++|||...+....++|.+|.+||. +|+..-....-. .-|
T Consensus 35 rll~~~kske~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~~~ktn~~qn~~ 114 (342)
T KOG0568|consen 35 RLLHLHKSKEKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEKFAKTNARQNIG 114 (342)
T ss_pred HHHHHhhhHHHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 344444455667899999999999999999999999999999999998888999999999999 776433221111 112
Q ss_pred C-CCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCcccccCCCC
Q 013319 96 D-EKGSPGFDAGHPGNQGGYTYFTSGGPGQSQFTSRPGEWQNMGGQG 141 (445)
Q Consensus 96 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (445)
+ ++....++..+..+++. +|.+..|.|.++..+++.+|+++++.-
T Consensus 115 edee~~~efdik~kapqhr-hyls~egig~gtp~qrekhyqq~ra~k 160 (342)
T KOG0568|consen 115 EDEEDAEEFDIKHKAPQHR-HYLSFEGIGFGTPFQREKHYQQFRADK 160 (342)
T ss_pred cchhhHHHhhhccCCchhh-hhhcccCcccCCchHHHHHHHHHHHHH
Confidence 2 22334566666666665 667777888888888888888776553
No 130
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.11 E-value=6.1e-09 Score=93.99 Aligned_cols=164 Identities=21% Similarity=0.324 Sum_probs=120.7
Q ss_pred hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEeccCCCCCCCeeeecCc-ccHHHHHHHHHhhCCCCc
Q 013319 235 ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYSYKAGDKGSLVEYNEH-LVAKNLKSFCRDHLPRFS 313 (445)
Q Consensus 235 ~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g~-~~~~~l~~fi~~~lp~~~ 313 (445)
...|.++|+.+.+.+.|+.++ +..+|+++++.. |+|++|.. ..++...|.|. .+.+.|.+||..+.-+.+
T Consensus 9 ~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~---p~i~~~k~---~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v 79 (184)
T PF13848_consen 9 FEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE---PTIVVYKK---FDEKPVVYDGDKFTPEELKKFIKKNSFPLV 79 (184)
T ss_dssp HHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS---SEEEEEEC---TTTSEEEESSSTTSHHHHHHHHHHHSSTSC
T ss_pred HHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC---CcEEEecc---CCCCceecccccCCHHHHHHHHHHhccccc
Confidence 678999999999889999987 777999998877 99999953 23567899998 799999999998766666
Q ss_pred eeccccccchhhhccCCCC-EEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCC--CCCeEE
Q 013319 314 KRISLNRIEFTFDAKARLP-SVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVD--ALPAIV 385 (445)
Q Consensus 314 ~~i~~~~~~~~~~~~~~~~-~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~--~~Ptlv 385 (445)
..++..+..... ....+ .+++|..+.. ....+..+|..+++++.|+.+... ..+.+++.++++ .+|+++
T Consensus 80 ~~~t~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~-~~~~~~~~~~i~~~~~P~~v 156 (184)
T PF13848_consen 80 PELTPENFEKLF--SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDAD-DFPRLLKYFGIDEDDLPALV 156 (184)
T ss_dssp EEESTTHHHHHH--STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETT-TTHHHHHHTTTTTSSSSEEE
T ss_pred cccchhhHHHHh--cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehH-HhHHHHHHcCCCCccCCEEE
Confidence 667766544333 23334 6666665432 245678899999999999766544 467899999999 699999
Q ss_pred EEccCCcccc--cccccChhhHHHHHH
Q 013319 386 GWLSNGEKDV--LKTGISVKDQKSSIH 410 (445)
Q Consensus 386 ~~~~~~~~~~--~~~~~~~~~~~~~~~ 410 (445)
++........ +.+.++.++|..|+.
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 157 IFDSNKGKYYYLPEGEITPESIEKFLN 183 (184)
T ss_dssp EEETTTSEEEE--SSCGCHHHHHHHHH
T ss_pred EEECCCCcEEcCCCCCCCHHHHHHHhc
Confidence 8886544322 355566677766654
No 131
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.09 E-value=9.5e-11 Score=111.87 Aligned_cols=56 Identities=41% Similarity=0.644 Sum_probs=50.9
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--------hHHHHHHHHHHHHHHHcCC
Q 013319 29 TVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN--------KAAQEKFAEINNAYDILSD 84 (445)
Q Consensus 29 ~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~--------~~~~~~f~~i~~Ay~~L~d 84 (445)
..++|+||||++++|.+|||++||+|++++|||+... +.++++|++|++||++|+.
T Consensus 199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999999999999642 3578999999999999975
No 132
>PHA02624 large T antigen; Provisional
Probab=99.06 E-value=4.1e-10 Score=116.15 Aligned_cols=61 Identities=28% Similarity=0.490 Sum_probs=57.1
Q ss_pred CCcCcccccCCCCCC--CHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHh
Q 013319 28 KTVDLYKVLGVERNA--SQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNY 91 (445)
Q Consensus 28 ~~~d~y~vLgv~~~a--~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~y 91 (445)
...++|++|||+++| +.++||+|||++++++|||++.+ .++|++|++||++|+|+.+|..|
T Consensus 9 e~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd---eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 9 ESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD---EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc---HHHHHHHHHHHHHHhcHHHhhhc
Confidence 357899999999999 99999999999999999999754 67999999999999999999999
No 133
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.05 E-value=1.4e-09 Score=101.25 Aligned_cols=95 Identities=13% Similarity=0.158 Sum_probs=75.6
Q ss_pred cccChhhHHHHhhcCCc-EEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEe
Q 013319 202 RALNLQVFKKEIVEKGM-TWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAY 279 (445)
Q Consensus 202 ~~Lt~~~f~~~v~~~~~-~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f 279 (445)
..|+.++.+. +...+. +.++.||++||++|+. .|.+++++.+. +.+.+..||.++++.++++++|.++ ||++++
T Consensus 118 ~~L~~~~~~~-l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~~~~~~~~~~~V~~v--Ptl~i~ 193 (215)
T TIGR02187 118 PGLSEKTVEL-LQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEANENPDLAEKYGVMSV--PKIVIN 193 (215)
T ss_pred CCCCHHHHHH-HHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCCCCHHHHHHhCCccC--CEEEEe
Confidence 3555555533 333344 4566699999999999 99999999884 6788999999999999999999999 999998
Q ss_pred ccCCCCCCCeeeecCcccHHHHHHHHHh
Q 013319 280 SYKAGDKGSLVEYNEHLVAKNLKSFCRD 307 (445)
Q Consensus 280 ~~~~~~~g~~~~y~g~~~~~~l~~fi~~ 307 (445)
.++. .+.|....++|.+|+.+
T Consensus 194 -----~~~~--~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 194 -----KGVE--EFVGAYPEEQFLEYILS 214 (215)
T ss_pred -----cCCE--EEECCCCHHHHHHHHHh
Confidence 2332 38888888999999875
No 134
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.98 E-value=1.3e-09 Score=83.84 Aligned_cols=71 Identities=14% Similarity=0.217 Sum_probs=57.6
Q ss_pred EEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEeccCCCCCCCeeeecCc-ccHH
Q 013319 222 LFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYSYKAGDKGSLVEYNEH-LVAK 299 (445)
Q Consensus 222 V~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g~-~~~~ 299 (445)
|.||++||++|+. .|.++++++++...+.+..|| +...+.+++|.+. |||++ +|+.+ +.|. .+.+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~v--Pti~i-------~G~~~-~~G~~~~~~ 69 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTAT--PGVAV-------DGELV-IMGKIPSKE 69 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcC--CEEEE-------CCEEE-EEeccCCHH
Confidence 7899999999999 999999999998788888887 4555888999999 99998 34434 6674 3447
Q ss_pred HHHHHH
Q 013319 300 NLKSFC 305 (445)
Q Consensus 300 ~l~~fi 305 (445)
+|.+++
T Consensus 70 ~l~~~l 75 (76)
T TIGR00412 70 EIKEIL 75 (76)
T ss_pred HHHHHh
Confidence 777765
No 135
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.95 E-value=8.6e-10 Score=92.28 Aligned_cols=68 Identities=18% Similarity=0.152 Sum_probs=53.9
Q ss_pred HHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccch-hhHhHhCCcc--CCCcEEEEec
Q 013319 211 KEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEA-SLCKELGVHR--PRSPRIFAYS 280 (445)
Q Consensus 211 ~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~-~lc~~~~I~~--~~~Pti~~f~ 280 (445)
+....+++++||.|||+||++|+. .|.+.+.+........|..||.+.+. .+...+++.+ + ||+++|.
T Consensus 13 ~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~v--Pt~~f~~ 84 (117)
T cd02959 13 KEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYI--PRILFLD 84 (117)
T ss_pred HHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCcc--ceEEEEC
Confidence 345567789999999999999999 99999987765444567777777664 4557888876 8 9999994
No 136
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.95 E-value=2e-09 Score=95.59 Aligned_cols=64 Identities=23% Similarity=0.328 Sum_probs=57.1
Q ss_pred cCcccccCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCh------HHHHHHHHHHHHHHHcCCHHHHHHhhh
Q 013319 30 VDLYKVLGVERN--ASQREIQKAFHKLSLQYHPDKNKNK------AAQEKFAEINNAYDILSDEEKRKNYDL 93 (445)
Q Consensus 30 ~d~y~vLgv~~~--a~~~~ik~ayr~l~~~~hPd~~~~~------~~~~~f~~i~~Ay~~L~d~~~r~~yd~ 93 (445)
.|||++|||++. .+..+++++|+++.+++|||+.... .+.+.-..||+||.+|+||.+|..|=.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 699999999996 8999999999999999999997642 245568999999999999999999975
No 137
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.7e-09 Score=94.86 Aligned_cols=76 Identities=29% Similarity=0.516 Sum_probs=65.6
Q ss_pred HHHHHHhhhcCCCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--hHHHHHHHHHHHHHHHcCCHHHHHHhh
Q 013319 17 FSTLLILNAKAKTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN--KAAQEKFAEINNAYDILSDEEKRKNYD 92 (445)
Q Consensus 17 ~~~~~~~~~~~~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~yd 92 (445)
|-.++...+.+.+.|+|+||.|.|..+.++||+.||+|+...|||+|++ +.|+..|.-+.+||..|-|+..|..-+
T Consensus 40 IeRllrpgstyfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 40 IERLLRPGSTYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred HHHHhcCCccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 3344445567789999999999999999999999999999999999995 578899999999999999998665543
No 138
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.90 E-value=5.5e-09 Score=110.56 Aligned_cols=101 Identities=14% Similarity=0.192 Sum_probs=79.0
Q ss_pred cccc-ChhhHHHHhh---cCCcEEEEEEECCCCccCCC-hhHH---HHHHHHhcCccEEEEEeCccc----hhhHhHhCC
Q 013319 201 IRAL-NLQVFKKEIV---EKGMTWLLFFYSPSSNRDGY-ESVI---EEVANSMEGALKVGSINCETE----ASLCKELGV 268 (445)
Q Consensus 201 V~~L-t~~~f~~~v~---~~~~~~lV~Fyap~C~~C~~-~p~~---~~~a~~l~~~v~~~~Vdc~~~----~~lc~~~~I 268 (445)
...+ +.+++++.+. .++++++|.|||+||++|+. ++.. .++.+.++ .+.+.+||++++ .+++++++|
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v 532 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNV 532 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCC
Confidence 3444 4567766654 34579999999999999999 7764 67778776 478999999864 688999999
Q ss_pred ccCCCcEEEEeccCCCCCCCe---eeecCcccHHHHHHHHHhh
Q 013319 269 HRPRSPRIFAYSYKAGDKGSL---VEYNEHLVAKNLKSFCRDH 308 (445)
Q Consensus 269 ~~~~~Pti~~f~~~~~~~g~~---~~y~g~~~~~~l~~fi~~~ 308 (445)
.++ ||+++|+ .+|+. ..+.|..+.+++.+++++.
T Consensus 533 ~g~--Pt~~~~~----~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 533 LGL--PTILFFD----AQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCC--CEEEEEC----CCCCCcccccccCCCCHHHHHHHHHHh
Confidence 999 9999994 24443 4578988999999998864
No 139
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.87 E-value=1.6e-08 Score=90.49 Aligned_cols=102 Identities=14% Similarity=0.203 Sum_probs=79.2
Q ss_pred cccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCcc-------------------
Q 013319 200 NIRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCET------------------- 258 (445)
Q Consensus 200 ~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~------------------- 258 (445)
.+..++.+.+.-.. -.+++++|.||++||++|+. .+.+.++++++.+ .+.+..|+++.
T Consensus 45 ~~~~~~g~~~~l~~-~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~ 123 (173)
T PRK03147 45 VLTDLEGKKIELKD-LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVA 123 (173)
T ss_pred EeecCCCCEEeHHH-cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEE
Confidence 34455555442211 24578999999999999999 9999999999976 58899999863
Q ss_pred ---chhhHhHhCCccCCCcEEEEeccCCCCCCCee-eecCcccHHHHHHHHHhh
Q 013319 259 ---EASLCKELGVHRPRSPRIFAYSYKAGDKGSLV-EYNEHLVAKNLKSFCRDH 308 (445)
Q Consensus 259 ---~~~lc~~~~I~~~~~Pti~~f~~~~~~~g~~~-~y~g~~~~~~l~~fi~~~ 308 (445)
+..+++.++|..+ |+++++. .+|+++ .+.|..+.++|.+++.+.
T Consensus 124 ~d~~~~~~~~~~v~~~--P~~~lid----~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 124 IDKGRQVIDAYGVGPL--PTTFLID----KDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred ECCcchHHHHcCCCCc--CeEEEEC----CCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 3577899999999 9999983 456655 578988999999988754
No 140
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.83 E-value=8.1e-10 Score=99.82 Aligned_cols=98 Identities=17% Similarity=0.301 Sum_probs=87.0
Q ss_pred cccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCccchhhHhHhCCccCCCcEEE
Q 013319 200 NIRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCETEASLCKELGVHRPRSPRIF 277 (445)
Q Consensus 200 ~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~ 277 (445)
.+..++++|+.. ++... |+|+|+||||+.|+. .|+|+..|.--.+ .|+++.||++.++-|.-+|=|... |||+
T Consensus 25 ~~~~~~eenw~~-~l~ge--wmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaL--ptIY 99 (248)
T KOG0913|consen 25 KLTRIDEENWKE-LLTGE--WMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTAL--PTIY 99 (248)
T ss_pred eeEEecccchhh-hhchH--HHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEec--ceEE
Confidence 689999999965 44444 999999999999999 9999999988777 799999999999999999999999 9998
Q ss_pred EeccCCCCCCCeeeecCcccHHHHHHHHHh
Q 013319 278 AYSYKAGDKGSLVEYNEHLVAKNLKSFCRD 307 (445)
Q Consensus 278 ~f~~~~~~~g~~~~y~g~~~~~~l~~fi~~ 307 (445)
-. .+|.--.|.|+|+..++++|+..
T Consensus 100 Hv-----kDGeFrrysgaRdk~dfisf~~~ 124 (248)
T KOG0913|consen 100 HV-----KDGEFRRYSGARDKNDFISFEEH 124 (248)
T ss_pred Ee-----eccccccccCcccchhHHHHHHh
Confidence 76 56666779999999999999984
No 141
>PHA02125 thioredoxin-like protein
Probab=98.82 E-value=4.1e-09 Score=80.88 Aligned_cols=49 Identities=8% Similarity=0.183 Sum_probs=44.5
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEE
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIF 277 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~ 277 (445)
+|.||++||++|+. .|.+++++ +.++.||++++.+++++|+|.++ ||++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~--PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSL--PTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCcee--CeEE
Confidence 68999999999999 99987653 46889999999999999999999 9987
No 142
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.82 E-value=9.7e-09 Score=76.79 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=50.8
Q ss_pred EEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEE
Q 013319 220 WLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 220 ~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~ 278 (445)
-++.||++||++|+. .+.+++++... +.+.+..+|.+++++++++++|.++ |||++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~l~~~~~i~~v--Pti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPDLADEYGVMSV--PAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHhHHHHcCCccc--CEEEE
Confidence 478899999999999 99999998753 5699999999999999999999999 99977
No 143
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.77 E-value=8.9e-09 Score=85.24 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=61.3
Q ss_pred cCCcEEEEEEECCCCccCCC-hhHHHH---HHHHhcCccEEEEEeCccc--------------------hhhHhHhCCcc
Q 013319 215 EKGMTWLLFFYSPSSNRDGY-ESVIEE---VANSMEGALKVGSINCETE--------------------ASLCKELGVHR 270 (445)
Q Consensus 215 ~~~~~~lV~Fyap~C~~C~~-~p~~~~---~a~~l~~~v~~~~Vdc~~~--------------------~~lc~~~~I~~ 270 (445)
.++++.+|.|++|||++|+. .+...+ +...++..+.+..++++.. .++.++++|.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 45678999999999999999 777764 4555555688888888753 35889999999
Q ss_pred CCCcEEEEeccCCCCCCCee-eecCcccHHHHHHHH
Q 013319 271 PRSPRIFAYSYKAGDKGSLV-EYNEHLVAKNLKSFC 305 (445)
Q Consensus 271 ~~~Pti~~f~~~~~~~g~~~-~y~g~~~~~~l~~fi 305 (445)
+ ||++++. .+|+.+ .+.|..+.++|.+++
T Consensus 83 t--Pt~~~~d----~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 T--PTIVFLD----KDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp S--SEEEECT----TTSCEEEEEESS--HHHHHHHH
T ss_pred c--CEEEEEc----CCCCEEEEecCCCCHHHHHhhC
Confidence 9 9999983 356544 588999999998764
No 144
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.77 E-value=1.3e-08 Score=89.34 Aligned_cols=53 Identities=32% Similarity=0.481 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCCh------HHHHHHHHHHHHHHHcCCHHHHHHhhhc
Q 013319 42 ASQREIQKAFHKLSLQYHPDKNKNK------AAQEKFAEINNAYDILSDEEKRKNYDLY 94 (445)
Q Consensus 42 a~~~~ik~ayr~l~~~~hPd~~~~~------~~~~~f~~i~~Ay~~L~d~~~r~~yd~~ 94 (445)
.+..+|+++||++++++|||+.... .+.+.+..|++||++|+||.+|..|+..
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 4678999999999999999986532 2567899999999999999999999974
No 145
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.71 E-value=6.8e-08 Score=81.40 Aligned_cols=80 Identities=14% Similarity=0.034 Sum_probs=61.2
Q ss_pred cChhhHHHHhhcCCcEEEEEEECCCCccCCC-hh-HHH--HHHHHhcCccEEEEEeCccchhhHhH--------hCCccC
Q 013319 204 LNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ES-VIE--EVANSMEGALKVGSINCETEASLCKE--------LGVHRP 271 (445)
Q Consensus 204 Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p-~~~--~~a~~l~~~v~~~~Vdc~~~~~lc~~--------~~I~~~ 271 (445)
.+++.+. ...++++++||.||++||+.|+. .+ +|. ++++.+...+.+++||.++.+++++. +++.++
T Consensus 3 ~~~eal~-~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~ 81 (124)
T cd02955 3 WGEEAFE-KARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGW 81 (124)
T ss_pred CCHHHHH-HHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCC
Confidence 3456664 45677889999999999999999 65 453 57777776788889999988777653 488999
Q ss_pred CCcEEEEeccCCCCCCCee
Q 013319 272 RSPRIFAYSYKAGDKGSLV 290 (445)
Q Consensus 272 ~~Pti~~f~~~~~~~g~~~ 290 (445)
|+++++. .+|+++
T Consensus 82 --Pt~vfl~----~~G~~~ 94 (124)
T cd02955 82 --PLNVFLT----PDLKPF 94 (124)
T ss_pred --CEEEEEC----CCCCEE
Confidence 9999993 345544
No 146
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.71 E-value=3.8e-08 Score=101.66 Aligned_cols=87 Identities=11% Similarity=0.087 Sum_probs=70.3
Q ss_pred hcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEE----------------------------eCccchhhH
Q 013319 214 VEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSI----------------------------NCETEASLC 263 (445)
Q Consensus 214 ~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~V----------------------------dc~~~~~lc 263 (445)
+..++++||.|||+||++|+. .|.+++++++++. .+.|..| .++.+..++
T Consensus 53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la 132 (521)
T PRK14018 53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA 132 (521)
T ss_pred ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence 446789999999999999999 9999999999873 4555444 344566789
Q ss_pred hHhCCccCCCcEEEEeccCCCCCCCee-eecCcccHHHHHHHHH
Q 013319 264 KELGVHRPRSPRIFAYSYKAGDKGSLV-EYNEHLVAKNLKSFCR 306 (445)
Q Consensus 264 ~~~~I~~~~~Pti~~f~~~~~~~g~~~-~y~g~~~~~~l~~fi~ 306 (445)
+.++|.++ ||++++. ++|+++ .+.|..+.++|..+|.
T Consensus 133 k~fgV~gi--PTt~IID----kdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 133 QSLNISVY--PSWAIIG----KDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHcCCCCc--CeEEEEc----CCCeEEEEEeCCCCHHHHHHHHH
Confidence 99999999 9998772 456554 4789999999999998
No 147
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.71 E-value=6.3e-08 Score=92.93 Aligned_cols=86 Identities=12% Similarity=0.163 Sum_probs=67.9
Q ss_pred CcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCcc-----------chhhHhHhCCccCCCcEEEEeccCCC
Q 013319 217 GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCET-----------EASLCKELGVHRPRSPRIFAYSYKAG 284 (445)
Q Consensus 217 ~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~-----------~~~lc~~~~I~~~~~Pti~~f~~~~~ 284 (445)
+++.||.||++||++|+. .|+++++++++. +.|..|+.+. +..++++++|..+ |+++++..+
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~v--Ptl~Lv~~~-- 239 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTV--PAVFLADPD-- 239 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcC--CeEEEEECC--
Confidence 568999999999999999 999999999984 6666666654 3568899999999 999999421
Q ss_pred CCCCeee-ecCcccHHHHHHHHHhhC
Q 013319 285 DKGSLVE-YNEHLVAKNLKSFCRDHL 309 (445)
Q Consensus 285 ~~g~~~~-y~g~~~~~~l~~fi~~~l 309 (445)
.+.+.. ..|..+.++|.+.+....
T Consensus 240 -~~~v~~v~~G~~s~~eL~~~i~~~a 264 (271)
T TIGR02740 240 -PNQFTPIGFGVMSADELVDRILLAA 264 (271)
T ss_pred -CCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 233333 558888899988887543
No 148
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.70 E-value=6.7e-08 Score=84.57 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=61.7
Q ss_pred EEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccc------------hhhH-hHh---CCccCCCcEEEEecc
Q 013319 219 TWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETE------------ASLC-KEL---GVHRPRSPRIFAYSY 281 (445)
Q Consensus 219 ~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~------------~~lc-~~~---~I~~~~~Pti~~f~~ 281 (445)
..+|.|||+||++|+. .|.+++++++++ +.+..|+.+.. .... ..+ +|.++ ||.+++.
T Consensus 52 ~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~i--PTt~LID- 126 (153)
T TIGR02738 52 YALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVT--PATFLVN- 126 (153)
T ss_pred CEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCC--CeEEEEe-
Confidence 4599999999999999 999999999883 56666666642 2233 334 78899 9999993
Q ss_pred CCCCCCC-ee-eecCcccHHHHHHHHHhh
Q 013319 282 KAGDKGS-LV-EYNEHLVAKNLKSFCRDH 308 (445)
Q Consensus 282 ~~~~~g~-~~-~y~g~~~~~~l~~fi~~~ 308 (445)
++|. .. .+.|..+.++|.+.+.+.
T Consensus 127 ---~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 127 ---VNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred ---CCCCEEEEEeecccCHHHHHHHHHHh
Confidence 3443 23 478998999888887654
No 149
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.66 E-value=7.5e-08 Score=82.14 Aligned_cols=71 Identities=14% Similarity=0.227 Sum_probs=56.3
Q ss_pred CCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC---ccEEEEEeCccc------------------------hhhHhHhC
Q 013319 216 KGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG---ALKVGSINCETE------------------------ASLCKELG 267 (445)
Q Consensus 216 ~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~---~v~~~~Vdc~~~------------------------~~lc~~~~ 267 (445)
.++++||.||++||++|+. .|.+.++.+++.. .+.+..|+.+.+ ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 3568999999999999999 9999999988863 467777776643 35778899
Q ss_pred CccCCCcEEEEeccCCCCCCCeeee
Q 013319 268 VHRPRSPRIFAYSYKAGDKGSLVEY 292 (445)
Q Consensus 268 I~~~~~Pti~~f~~~~~~~g~~~~y 292 (445)
|..+ |+++++. .+|+++..
T Consensus 97 v~~~--P~~~lid----~~G~i~~~ 115 (131)
T cd03009 97 IEGI--PTLIILD----ADGEVVTT 115 (131)
T ss_pred CCCC--CEEEEEC----CCCCEEcc
Confidence 9999 9999993 35655443
No 150
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.65 E-value=7.1e-08 Score=82.48 Aligned_cols=72 Identities=17% Similarity=0.205 Sum_probs=57.2
Q ss_pred CcEEEEEEECCCCccCCC-hhHHHHHHHHhcC---ccEEEEEeCccch-------------------------hhHhHhC
Q 013319 217 GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG---ALKVGSINCETEA-------------------------SLCKELG 267 (445)
Q Consensus 217 ~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~---~v~~~~Vdc~~~~-------------------------~lc~~~~ 267 (445)
++++||.||++||++|+. .|.+++++++++. .+.+..|+++.+. .+.+.|+
T Consensus 17 Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 96 (132)
T cd02964 17 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFK 96 (132)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcC
Confidence 578999999999999999 9999999998875 4778888876542 3556799
Q ss_pred CccCCCcEEEEeccCCCCCCCeeeecC
Q 013319 268 VHRPRSPRIFAYSYKAGDKGSLVEYNE 294 (445)
Q Consensus 268 I~~~~~Pti~~f~~~~~~~g~~~~y~g 294 (445)
|.++ |+++++. .+|+++...+
T Consensus 97 v~~i--Pt~~lid----~~G~iv~~~~ 117 (132)
T cd02964 97 VEGI--PTLVVLK----PDGDVVTTNA 117 (132)
T ss_pred CCCC--CEEEEEC----CCCCEEchhH
Confidence 9999 9999983 3566554444
No 151
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.65 E-value=1e-07 Score=78.19 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=55.8
Q ss_pred CcEEEEEEECCCCccCCC-hhHHHHHHHHhc-CccEEEEEeCccc-----------------------hhhHhHhCCccC
Q 013319 217 GMTWLLFFYSPSSNRDGY-ESVIEEVANSME-GALKVGSINCETE-----------------------ASLCKELGVHRP 271 (445)
Q Consensus 217 ~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~-~~v~~~~Vdc~~~-----------------------~~lc~~~~I~~~ 271 (445)
+++++|.||++||++|+. .+.+.++.+++. ..+.++.|+++.+ ..+++.|++..+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 568999999999999999 999999999987 4799999999986 788999999999
Q ss_pred CCcEEEEe
Q 013319 272 RSPRIFAY 279 (445)
Q Consensus 272 ~~Pti~~f 279 (445)
|+++++
T Consensus 99 --P~~~l~ 104 (116)
T cd02966 99 --PTTFLI 104 (116)
T ss_pred --ceEEEE
Confidence 999998
No 152
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.63 E-value=8.6e-08 Score=81.25 Aligned_cols=77 Identities=18% Similarity=0.238 Sum_probs=58.7
Q ss_pred CcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEe-----------------------CccchhhHhHhCCccCC
Q 013319 217 GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSIN-----------------------CETEASLCKELGVHRPR 272 (445)
Q Consensus 217 ~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vd-----------------------c~~~~~lc~~~~I~~~~ 272 (445)
+++++|.||++||++|+. .|.++++++.+. +.+..|+ ++.+..+++.|+|.++
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~- 101 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV- 101 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC-
Confidence 568999999999999999 999999988762 6666665 3445577888999999
Q ss_pred CcEEEEeccCCCCCCCee-eecCcccHHHH
Q 013319 273 SPRIFAYSYKAGDKGSLV-EYNEHLVAKNL 301 (445)
Q Consensus 273 ~Pti~~f~~~~~~~g~~~-~y~g~~~~~~l 301 (445)
|+.+++ .++|+++ .+.|..+.+.|
T Consensus 102 -P~~~~l----d~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 -PETFLI----DGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred -CeEEEE----CCCceEEEEEeccCChHhc
Confidence 976666 2456543 47788776654
No 153
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.63 E-value=1.2e-07 Score=86.04 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=66.3
Q ss_pred cCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccch-----------------------hhHhHhCCcc
Q 013319 215 EKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEA-----------------------SLCKELGVHR 270 (445)
Q Consensus 215 ~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~-----------------------~lc~~~~I~~ 270 (445)
..+++++|.||++||++|+. .|.+.+++++ .+.+..|+.+++. .+++.|+|.+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 35678999999999999999 9999988653 4777888765432 2455789999
Q ss_pred CCCcEEEEeccCCCCCCCe-eeecCcccHHHHHHHHHhhCC
Q 013319 271 PRSPRIFAYSYKAGDKGSL-VEYNEHLVAKNLKSFCRDHLP 310 (445)
Q Consensus 271 ~~~Pti~~f~~~~~~~g~~-~~y~g~~~~~~l~~fi~~~lp 310 (445)
+ |+.+++. ++|++ ..+.|..+.++|.+++...++
T Consensus 143 ~--P~t~vid----~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 143 A--PETFLID----GNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred C--CeEEEEC----CCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 9 9877772 45653 447888888889888887654
No 154
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=7.8e-08 Score=88.27 Aligned_cols=71 Identities=39% Similarity=0.583 Sum_probs=63.2
Q ss_pred hcCCCcCcccccCCCC---CCCHHHHHHHHHHHHHhhCCCCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHhhhcC
Q 013319 25 AKAKTVDLYKVLGVER---NASQREIQKAFHKLSLQYHPDKNK---NKAAQEKFAEINNAYDILSDEEKRKNYDLYG 95 (445)
Q Consensus 25 ~~~~~~d~y~vLgv~~---~a~~~~ik~ayr~l~~~~hPd~~~---~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g 95 (445)
..++..|+|.+|||+. .+++.+|.++.++.+.+||||+.. +..+.+.|..|++||++|+|+.+|..||.-.
T Consensus 38 k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 38 KNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 3577899999999987 588999999999999999999973 4567899999999999999999999999643
No 155
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.61 E-value=1.8e-07 Score=78.70 Aligned_cols=81 Identities=14% Similarity=0.232 Sum_probs=59.4
Q ss_pred CCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEE--------------------EeCccchhhHhHhCCccCCCc
Q 013319 216 KGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGS--------------------INCETEASLCKELGVHRPRSP 274 (445)
Q Consensus 216 ~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~--------------------Vdc~~~~~lc~~~~I~~~~~P 274 (445)
.+++++|.||++||++|+. .|.+.++++.+. .+.+.. +-++.+..+++.|+|.++ |
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~--P 95 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVT--P 95 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcc--c
Confidence 3478999999999999999 999999988742 111111 112345679999999999 9
Q ss_pred EEEEeccCCCCCCCeeeecCcccHHHHHH
Q 013319 275 RIFAYSYKAGDKGSLVEYNEHLVAKNLKS 303 (445)
Q Consensus 275 ti~~f~~~~~~~g~~~~y~g~~~~~~l~~ 303 (445)
+++++. .+|....+.|..+.+.|.+
T Consensus 96 ~~~vid----~~gi~~~~~g~~~~~~~~~ 120 (123)
T cd03011 96 AIVIVD----PGGIVFVTTGVTSEWGLRL 120 (123)
T ss_pred EEEEEc----CCCeEEEEeccCCHHHHHh
Confidence 999993 3344445778878887764
No 156
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.60 E-value=4.8e-07 Score=76.43 Aligned_cols=102 Identities=13% Similarity=0.157 Sum_probs=77.9
Q ss_pred cccChhhHHHHhhcCCcEEEEEEECC--CCccCCC-hhHHHHHHHHhcC-ccEEEEEeCccchhhHhHhCCccCCCcEEE
Q 013319 202 RALNLQVFKKEIVEKGMTWLLFFYSP--SSNRDGY-ESVIEEVANSMEG-ALKVGSINCETEASLCKELGVHRPRSPRIF 277 (445)
Q Consensus 202 ~~Lt~~~f~~~v~~~~~~~lV~Fyap--~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~ 277 (445)
..++..+++..+...+ .+++.|-.+ -++.+.. +-+.+++++++.+ .+++++||+++++.++.+|||.++ ||++
T Consensus 20 ~~~~~~~~~~~~~~~~-~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~si--PTLl 96 (132)
T PRK11509 20 TPVSESRLDDWLTQAP-DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRF--PATL 96 (132)
T ss_pred CccccccHHHHHhCCC-cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccC--CEEE
Confidence 3445566666554333 344444332 2556777 8899999999975 599999999999999999999999 9999
Q ss_pred EeccCCCCCCCee-eecCcccHHHHHHHHHhhCCC
Q 013319 278 AYSYKAGDKGSLV-EYNEHLVAKNLKSFCRDHLPR 311 (445)
Q Consensus 278 ~f~~~~~~~g~~~-~y~g~~~~~~l~~fi~~~lp~ 311 (445)
+| ++|+.+ ...|.++.+++.++|.+.+..
T Consensus 97 ~F-----kdGk~v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 97 VF-----TGGNYRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred EE-----ECCEEEEEEeCcCCHHHHHHHHHHHhcC
Confidence 99 556555 477988999999999987754
No 157
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.58 E-value=2.3e-07 Score=83.19 Aligned_cols=85 Identities=16% Similarity=0.213 Sum_probs=64.2
Q ss_pred CCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCc-----------------------cchhhHhHhCCccC
Q 013319 216 KGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCE-----------------------TEASLCKELGVHRP 271 (445)
Q Consensus 216 ~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~-----------------------~~~~lc~~~~I~~~ 271 (445)
.+++++|.||++||++|+. .|.+++++++ .+.+..|+.+ .+..+.+.|++.++
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 4678999999999999999 9999988764 3556666542 23355677898888
Q ss_pred CCcEEEEeccCCCCCCCee-eecCcccHHHHHHHHHhhC
Q 013319 272 RSPRIFAYSYKAGDKGSLV-EYNEHLVAKNLKSFCRDHL 309 (445)
Q Consensus 272 ~~Pti~~f~~~~~~~g~~~-~y~g~~~~~~l~~fi~~~l 309 (445)
|+.+++ .++|++. .+.|..+.+++.+++.+.+
T Consensus 139 --P~~~~i----d~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 139 --PETFLV----DGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred --CeEEEE----cCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 977776 2456544 4778888999999988765
No 158
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.56 E-value=3.8e-07 Score=72.32 Aligned_cols=75 Identities=15% Similarity=0.076 Sum_probs=61.4
Q ss_pred CcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEeccCCCCCCCeeeecCc
Q 013319 217 GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYSYKAGDKGSLVEYNEH 295 (445)
Q Consensus 217 ~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g~ 295 (445)
+.+-+..|+++||++|.. .+.+++++.+. +.+.+..+|.++.++++++|+|.++ ||+++ +|+ ..+.|.
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~~~~e~a~~~~V~~v--Pt~vi-------dG~-~~~~G~ 80 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGALFQDEVEERGIMSV--PAIFL-------NGE-LFGFGR 80 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhHhCHHHHHHcCCccC--CEEEE-------CCE-EEEeCC
Confidence 346788999999999999 99999999875 4699999999999999999999999 99975 243 445675
Q ss_pred ccHHHHH
Q 013319 296 LVAKNLK 302 (445)
Q Consensus 296 ~~~~~l~ 302 (445)
.+.++|.
T Consensus 81 ~~~~e~~ 87 (89)
T cd03026 81 MTLEEIL 87 (89)
T ss_pred CCHHHHh
Confidence 5555543
No 159
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.2e-07 Score=84.85 Aligned_cols=83 Identities=18% Similarity=0.300 Sum_probs=66.1
Q ss_pred ccccc-ChhhHHHHhh-cCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCccchhhHhHhCCcc----C
Q 013319 200 NIRAL-NLQVFKKEIV-EKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCETEASLCKELGVHR----P 271 (445)
Q Consensus 200 ~V~~L-t~~~f~~~v~-~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~~~~lc~~~~I~~----~ 271 (445)
.|.-+ +.+.+++++. +....|+|+||+-|.+.|+. +|.|.++..+|.. .++||+||....++.+.+|+|.. -
T Consensus 125 ~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~sr 204 (265)
T KOG0914|consen 125 TIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSR 204 (265)
T ss_pred heeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccc
Confidence 35666 4444444432 23349999999999999999 9999999999986 89999999999999999999863 1
Q ss_pred CCcEEEEeccC
Q 013319 272 RSPRIFAYSYK 282 (445)
Q Consensus 272 ~~Pti~~f~~~ 282 (445)
..||+++|..+
T Consensus 205 QLPT~ilFq~g 215 (265)
T KOG0914|consen 205 QLPTYILFQKG 215 (265)
T ss_pred cCCeEEEEccc
Confidence 34999999543
No 160
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.55 E-value=2.4e-07 Score=80.24 Aligned_cols=74 Identities=15% Similarity=0.225 Sum_probs=58.3
Q ss_pred CCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC--------ccEEEEEeCccc-------------------------hh
Q 013319 216 KGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG--------ALKVGSINCETE-------------------------AS 261 (445)
Q Consensus 216 ~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~--------~v~~~~Vdc~~~-------------------------~~ 261 (445)
++++++|.|+|+||++|+. .|.++++.+++++ .+.+..|+.+.+ ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 3578999999999999999 9999998877653 478888887753 14
Q ss_pred hHhHhCCccCCCcEEEEeccCCCCCCCeeeecCc
Q 013319 262 LCKELGVHRPRSPRIFAYSYKAGDKGSLVEYNEH 295 (445)
Q Consensus 262 lc~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g~ 295 (445)
++++|+|.++ |+++++ ..+|+++...|.
T Consensus 104 l~~~y~v~~i--Pt~vlI----d~~G~Vv~~~~~ 131 (146)
T cd03008 104 LEAQFSVEEL--PTVVVL----KPDGDVLAANAV 131 (146)
T ss_pred HHHHcCCCCC--CEEEEE----CCCCcEEeeChH
Confidence 6778899999 999998 346766665543
No 161
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.52 E-value=1.8e-07 Score=74.92 Aligned_cols=61 Identities=15% Similarity=0.281 Sum_probs=50.0
Q ss_pred CcEEEEEEECCCCccCCC-hhHHHHHHHHhc--CccEEEEEeCccc-------------------------hhhHhHhCC
Q 013319 217 GMTWLLFFYSPSSNRDGY-ESVIEEVANSME--GALKVGSINCETE-------------------------ASLCKELGV 268 (445)
Q Consensus 217 ~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~--~~v~~~~Vdc~~~-------------------------~~lc~~~~I 268 (445)
+++++|.|||+||++|+. .|...++.++++ ..+.+..|+++++ ..+.+.++|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 468999999999999999 999999999999 6899999999875 246677788
Q ss_pred ccCCCcEEEEe
Q 013319 269 HRPRSPRIFAY 279 (445)
Q Consensus 269 ~~~~~Pti~~f 279 (445)
..+ |+++++
T Consensus 81 ~~i--P~~~ll 89 (95)
T PF13905_consen 81 NGI--PTLVLL 89 (95)
T ss_dssp TSS--SEEEEE
T ss_pred CcC--CEEEEE
Confidence 888 888877
No 162
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.49 E-value=2.1e-07 Score=77.14 Aligned_cols=59 Identities=25% Similarity=0.273 Sum_probs=46.1
Q ss_pred CCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEe---CccchhhHhHhCCccCCCcEE
Q 013319 216 KGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSIN---CETEASLCKELGVHRPRSPRI 276 (445)
Q Consensus 216 ~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vd---c~~~~~lc~~~~I~~~~~Pti 276 (445)
.+++++|.||++||++|+. .|.++++++++.+.+.+..|. .++...+++++++..+ |++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~--p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAF--PYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCC--cEE
Confidence 3568999999999999999 999999999887666666662 2233567788888777 764
No 163
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.46 E-value=1.2e-06 Score=73.40 Aligned_cols=84 Identities=13% Similarity=0.116 Sum_probs=62.9
Q ss_pred ccCCCCEEEEEecCCC---------ChHHHHHHHHHh--hccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccc
Q 013319 327 AKARLPSVLLLSTKKE---------TPIIWRVLSGMY--HERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDV 395 (445)
Q Consensus 327 ~~~~~~~vvlF~~~~~---------~~~~~~~lA~~~--~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~ 395 (445)
.....+.|++|...+. +.+.+.++|.++ .+.+.|+.++++ .+.+++++|+|.++|||++|++++...
T Consensus 24 ~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d-~~~~La~~~~I~~iPTl~lfk~G~~v~- 101 (120)
T cd03065 24 KKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSK-KDAKVAKKLGLDEEDSIYVFKDDEVIE- 101 (120)
T ss_pred HhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCC-CCHHHHHHcCCccccEEEEEECCEEEE-
Confidence 3455678888865543 235567777777 677888777665 679999999999999999888766555
Q ss_pred cccccChhhHHHHHHHH
Q 013319 396 LKTGISVKDQKSSIHEL 412 (445)
Q Consensus 396 ~~~~~~~~~~~~~~~~~ 412 (445)
|.+..+.+.++.++..+
T Consensus 102 ~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 102 YDGEFAADTLVEFLLDL 118 (120)
T ss_pred eeCCCCHHHHHHHHHHH
Confidence 88888888887776644
No 164
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.45 E-value=6.8e-07 Score=79.84 Aligned_cols=82 Identities=10% Similarity=0.039 Sum_probs=65.6
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccc-------------hhhHhHhCC--ccCCCcEEEEeccCCC
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETE-------------ASLCKELGV--HRPRSPRIFAYSYKAG 284 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~-------------~~lc~~~~I--~~~~~Pti~~f~~~~~ 284 (445)
||.||++||++|+. .|.+++++++++ +.+..|+.+.. ..+.+.|++ ..+ |+.+++ .
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~i--PttfLI----d 144 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVAT--PTTFLV----N 144 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCC--CeEEEE----e
Confidence 77899999999999 999999999984 67777777643 235667885 588 999998 3
Q ss_pred CCCCee--eecCcccHHHHHHHHHhhCC
Q 013319 285 DKGSLV--EYNEHLVAKNLKSFCRDHLP 310 (445)
Q Consensus 285 ~~g~~~--~y~g~~~~~~l~~fi~~~lp 310 (445)
++|+.. .+.|..+.++|.+.+...++
T Consensus 145 ~~G~i~~~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 145 VNTLEALPLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred CCCcEEEEEEECCCCHHHHHHHHHHHHh
Confidence 566653 48999999999888887765
No 165
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.43 E-value=2e-06 Score=69.45 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=71.8
Q ss_pred ccccccchhhhccCCCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccC
Q 013319 316 ISLNRIEFTFDAKARLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSN 390 (445)
Q Consensus 316 i~~~~~~~~~~~~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~ 390 (445)
++.++++..... .+.+++|+|+.... ..+.|..++..+.+.+.|+.++.. .++.++++|+|+.+|++++|..+
T Consensus 4 lt~~~f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~-~~~~l~~~~~v~~~Pt~~~~~~g 81 (103)
T PF00085_consen 4 LTDENFEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD-ENKELCKKYGVKSVPTIIFFKNG 81 (103)
T ss_dssp ESTTTHHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT-TSHHHHHHTTCSSSSEEEEEETT
T ss_pred CCHHHHHHHHHc-cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhh-ccchhhhccCCCCCCEEEEEECC
Confidence 444444433322 46788888887653 267899999999988888666544 67899999999999999988888
Q ss_pred CcccccccccChhhHHHHHHH
Q 013319 391 GEKDVLKTGISVKDQKSSIHE 411 (445)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~ 411 (445)
+....|.+..+.++|++++++
T Consensus 82 ~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 82 KEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp EEEEEEESSSSHHHHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHc
Confidence 777788888888888888765
No 166
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.42 E-value=1.8e-06 Score=69.94 Aligned_cols=80 Identities=9% Similarity=0.040 Sum_probs=62.8
Q ss_pred cCCCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccCh
Q 013319 328 KARLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGISV 402 (445)
Q Consensus 328 ~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~ 402 (445)
....+++|.|+..+. ..+.|.++|..+++.+.|+.++++ .++.++++++|+.+||+++|..+.....|.+..+.
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~-~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~ 94 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCG-DDRMLCRSQGVNSYPSLYVFPSGMNPEKYYGDRSK 94 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCC-ccHHHHHHcCCCccCEEEEEcCCCCcccCCCCCCH
Confidence 345788888876543 368999999999988888666554 56899999999999999999766667778888888
Q ss_pred hhHHHH
Q 013319 403 KDQKSS 408 (445)
Q Consensus 403 ~~~~~~ 408 (445)
++|+.+
T Consensus 95 ~~l~~f 100 (101)
T cd03003 95 ESLVKF 100 (101)
T ss_pred HHHHhh
Confidence 776553
No 167
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.35 E-value=1.3e-06 Score=98.68 Aligned_cols=89 Identities=20% Similarity=0.250 Sum_probs=70.5
Q ss_pred CCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeC---------------------------ccchhhHhHh
Q 013319 216 KGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINC---------------------------ETEASLCKEL 266 (445)
Q Consensus 216 ~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc---------------------------~~~~~lc~~~ 266 (445)
.++++||.|||+||++|+. .|.++++.+++++ .+.|..|.+ +.+..+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 4679999999999999999 9999999999976 477777743 1234567889
Q ss_pred CCccCCCcEEEEeccCCCCCCCee-eecCcccHHHHHHHHHhhCC
Q 013319 267 GVHRPRSPRIFAYSYKAGDKGSLV-EYNEHLVAKNLKSFCRDHLP 310 (445)
Q Consensus 267 ~I~~~~~Pti~~f~~~~~~~g~~~-~y~g~~~~~~l~~fi~~~lp 310 (445)
+|.++ |+++++. ++|+++ .+.|+...+.|.+++...+.
T Consensus 499 ~V~~i--Pt~ilid----~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSW--PTFAVVS----PNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCcc--ceEEEEC----CCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 99999 9999993 355544 47788888888888886543
No 168
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.30 E-value=3.6e-06 Score=69.78 Aligned_cols=81 Identities=7% Similarity=-0.005 Sum_probs=63.5
Q ss_pred ccCCCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHH-HHcCCCCCCeEEEEccCCccccccccc
Q 013319 327 AKARLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAV-KKLGVDALPAIVGWLSNGEKDVLKTGI 400 (445)
Q Consensus 327 ~~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~-~~f~V~~~Ptlv~~~~~~~~~~~~~~~ 400 (445)
...+.+++|.|+..+. ..+.|.++|..+++.+.|+.+++. .+..+| ++|+|.++|||++|+.++....|.+..
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d-~~~~l~~~~~~I~~~PTl~lf~~g~~~~~y~G~~ 104 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCW-WPQGKCRKQKHFFYFPVIHLYYRSRGPIEYKGPM 104 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECC-CChHHHHHhcCCcccCEEEEEECCccceEEeCCC
Confidence 4567788888876543 368899999999988888655433 567788 589999999999997766677898888
Q ss_pred ChhhHHHH
Q 013319 401 SVKDQKSS 408 (445)
Q Consensus 401 ~~~~~~~~ 408 (445)
+.++|+.+
T Consensus 105 ~~~~i~~~ 112 (113)
T cd03006 105 RAPYMEKF 112 (113)
T ss_pred CHHHHHhh
Confidence 88777654
No 169
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.29 E-value=4.7e-06 Score=69.27 Aligned_cols=94 Identities=13% Similarity=0.158 Sum_probs=70.4
Q ss_pred HHhhcCCcEEEEEEECCCCccCCC--hhHH--HHHHHHhcCccEEEEEeCcc--chhhHhHhCCccCCCcEEEEeccCCC
Q 013319 211 KEIVEKGMTWLLFFYSPSSNRDGY--ESVI--EEVANSMEGALKVGSINCET--EASLCKELGVHRPRSPRIFAYSYKAG 284 (445)
Q Consensus 211 ~~v~~~~~~~lV~Fyap~C~~C~~--~p~~--~~~a~~l~~~v~~~~Vdc~~--~~~lc~~~~I~~~~~Pti~~f~~~~~ 284 (445)
+...+++++++|.|+++||..|+. ..+| +++.+.++....+.++|.+. ...++..+++.++ |+++++..
T Consensus 11 ~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~--P~~~~i~~--- 85 (114)
T cd02958 11 QEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKY--PHIAIIDP--- 85 (114)
T ss_pred HHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCC--CeEEEEeC---
Confidence 334566789999999999999998 4456 55677776656666777763 4678999999999 99999932
Q ss_pred CCCCe-eeecCcccHHHHHHHHHhhC
Q 013319 285 DKGSL-VEYNEHLVAKNLKSFCRDHL 309 (445)
Q Consensus 285 ~~g~~-~~y~g~~~~~~l~~fi~~~l 309 (445)
.+|+. ....|..+.+++.+.+.+.+
T Consensus 86 ~~g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 86 RTGEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred ccCcEeEEEcCCCCHHHHHHHHHHHH
Confidence 14544 45789888898888776643
No 170
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.24 E-value=8.2e-06 Score=67.60 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=63.5
Q ss_pred cccccchhhhccCCCCEEEEEec--C-CCChHHHHHHHHHhhc---cceEEEEeecC----CChHHHHHcCCC--CCCeE
Q 013319 317 SLNRIEFTFDAKARLPSVLLLST--K-KETPIIWRVLSGMYHE---RLNFYDTEVHD----VSDPAVKKLGVD--ALPAI 384 (445)
Q Consensus 317 ~~~~~~~~~~~~~~~~~vvlF~~--~-~~~~~~~~~lA~~~~~---~~~f~~~~v~~----~~~~l~~~f~V~--~~Ptl 384 (445)
+++..+|......+..++|-|.. . ..-.+.++.||.++.. .+.++.+...+ .+.+||++|+|+ +||||
T Consensus 5 ~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl 84 (116)
T cd03007 5 DLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVI 84 (116)
T ss_pred ECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEE
Confidence 33344433333455566777765 2 2224789999988844 34554444321 358899999999 99999
Q ss_pred EEEccCC--cccccccc-cChhhHHHHHHH
Q 013319 385 VGWLSNG--EKDVLKTG-ISVKDQKSSIHE 411 (445)
Q Consensus 385 v~~~~~~--~~~~~~~~-~~~~~~~~~~~~ 411 (445)
++|..++ ....|+++ ++.++|+.++..
T Consensus 85 ~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 85 YLFHGGDFENPVPYSGADVTVDALQRFLKG 114 (116)
T ss_pred EEEeCCCcCCCccCCCCcccHHHHHHHHHh
Confidence 9888764 45689996 999888877654
No 171
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.24 E-value=5.4e-06 Score=70.16 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=48.9
Q ss_pred CCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCcc-----c----------------------hhhHhHh
Q 013319 216 KGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCET-----E----------------------ASLCKEL 266 (445)
Q Consensus 216 ~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~-----~----------------------~~lc~~~ 266 (445)
++++++|.||+.||+.|+. .|.++++.++++. .+.+..|++.+ . ..+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 3568999999999999999 9999999999985 68888886521 1 2455667
Q ss_pred CCccCCCcEEEEe
Q 013319 267 GVHRPRSPRIFAY 279 (445)
Q Consensus 267 ~I~~~~~Pti~~f 279 (445)
++..+ |+.+++
T Consensus 102 ~v~~~--P~~~vi 112 (126)
T cd03012 102 GNQYW--PALYLI 112 (126)
T ss_pred CCCcC--CeEEEE
Confidence 77777 887777
No 172
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.20 E-value=1.3e-05 Score=65.81 Aligned_cols=100 Identities=15% Similarity=0.072 Sum_probs=68.8
Q ss_pred HHHHHHhhCCCCceeccccccchhhhccCCCCEEEEEecCC-------CChHHHHHHHHHhhccceEEEEeecCCChHHH
Q 013319 301 LKSFCRDHLPRFSKRISLNRIEFTFDAKARLPSVLLLSTKK-------ETPIIWRVLSGMYHERLNFYDTEVHDVSDPAV 373 (445)
Q Consensus 301 l~~fi~~~lp~~~~~i~~~~~~~~~~~~~~~~~vvlF~~~~-------~~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~ 373 (445)
+++++..... ...++..+++.. ...+.+.||+|+... ...+.+.++|.+|.+.+.|+.+++. .+++++
T Consensus 2 ~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid-~~~~la 76 (111)
T cd02965 2 LVARLQTRHG--WPRVDAATLDDW--LAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRA-DEQALA 76 (111)
T ss_pred HhHHHHHhcC--CcccccccHHHH--HhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECC-CCHHHH
Confidence 3445544333 123444444422 256678899987763 2368999999999998888777655 568999
Q ss_pred HHcCCCCCCeEEEEccCCcccccccccChhhH
Q 013319 374 KKLGVDALPAIVGWLSNGEKDVLKTGISVKDQ 405 (445)
Q Consensus 374 ~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~~~~ 405 (445)
.+|+|.+.||+++|..++....+.+..+.+++
T Consensus 77 ~~f~V~sIPTli~fkdGk~v~~~~G~~~~~e~ 108 (111)
T cd02965 77 ARFGVLRTPALLFFRDGRYVGVLAGIRDWDEY 108 (111)
T ss_pred HHcCCCcCCEEEEEECCEEEEEEeCccCHHHH
Confidence 99999999999988877665566555555444
No 173
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.20 E-value=1.1e-05 Score=75.53 Aligned_cols=88 Identities=13% Similarity=0.185 Sum_probs=63.8
Q ss_pred CCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCcc-------c----hhhH-hHhCCc------------
Q 013319 216 KGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCET-------E----ASLC-KELGVH------------ 269 (445)
Q Consensus 216 ~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~-------~----~~lc-~~~~I~------------ 269 (445)
.++++||.||++||+.|.. .|.+.++.++++. .+.|..|+|+. . .+.+ +++++.
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 3578999999999999999 9999999999986 69999999852 1 2232 343332
Q ss_pred ----------------------cCCCcEEEEeccCCCCCCCeee-ecCcccHHHHHHHHHhhC
Q 013319 270 ----------------------RPRSPRIFAYSYKAGDKGSLVE-YNEHLVAKNLKSFCRDHL 309 (445)
Q Consensus 270 ----------------------~~~~Pti~~f~~~~~~~g~~~~-y~g~~~~~~l~~fi~~~l 309 (445)
.. |+.+++ .++|+++. |.|..+.++|...|++.+
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~--PttfLI----Dk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWN--FEKFLV----DKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccC--ceEEEE----CCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 12 555555 24565544 788888888888887765
No 174
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.18 E-value=9.6e-06 Score=66.02 Aligned_cols=80 Identities=8% Similarity=-0.002 Sum_probs=61.4
Q ss_pred cCCCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccC-CcccccccccC
Q 013319 328 KARLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSN-GEKDVLKTGIS 401 (445)
Q Consensus 328 ~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~-~~~~~~~~~~~ 401 (445)
....+++|.|+.... ..+.|..+|..+.+.+.|+.++.. .+++++++++|.++||+++|..+ +....|.+..+
T Consensus 17 ~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~~ 95 (104)
T cd03004 17 NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ-KYESLCQQANIRAYPTIRLYPGNASKYHSYNGWHR 95 (104)
T ss_pred cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECC-chHHHHHHcCCCcccEEEEEcCCCCCceEccCCCC
Confidence 345588888876543 368899999999888888665544 56889999999999999999887 66667877766
Q ss_pred -hhhHHHH
Q 013319 402 -VKDQKSS 408 (445)
Q Consensus 402 -~~~~~~~ 408 (445)
.+++..+
T Consensus 96 ~~~~l~~~ 103 (104)
T cd03004 96 DADSILEF 103 (104)
T ss_pred CHHHHHhh
Confidence 6666544
No 175
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.12 E-value=1.4e-05 Score=73.22 Aligned_cols=42 Identities=5% Similarity=0.039 Sum_probs=38.1
Q ss_pred CCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCc
Q 013319 216 KGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCE 257 (445)
Q Consensus 216 ~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~ 257 (445)
.++++||.|+|+||+.|+. .|.+.++.+++++ .+.|..|+|+
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 3578999999999999999 9999999999986 6999999984
No 176
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.11 E-value=1.8e-05 Score=71.97 Aligned_cols=82 Identities=22% Similarity=0.228 Sum_probs=56.4
Q ss_pred CCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCcc--------------------chhhHhHhCCccCCCc
Q 013319 216 KGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCET--------------------EASLCKELGVHRPRSP 274 (445)
Q Consensus 216 ~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~--------------------~~~lc~~~~I~~~~~P 274 (445)
.+++++|.||++||+.|+. .|.+.++.+... +.+..|+.+. ..++++.|++... |
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~--P 148 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKI--P 148 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCcc--c
Confidence 4568999999999999999 999999887653 4444444221 2366788899888 9
Q ss_pred EEEEeccCCCCCCCeeeecCcc-cHHHHHHHHH
Q 013319 275 RIFAYSYKAGDKGSLVEYNEHL-VAKNLKSFCR 306 (445)
Q Consensus 275 ti~~f~~~~~~~g~~~~y~g~~-~~~~l~~fi~ 306 (445)
+.+++. ++|+ +.+.|.. ..+.+.+.+.
T Consensus 149 ~~~lID----~~G~-I~~~g~~~~~~~le~ll~ 176 (189)
T TIGR02661 149 YGVLLD----QDGK-IRAKGLTNTREHLESLLE 176 (189)
T ss_pred eEEEEC----CCCe-EEEccCCCCHHHHHHHHH
Confidence 988872 3454 3445543 3355655554
No 177
>smart00594 UAS UAS domain.
Probab=98.10 E-value=1.8e-05 Score=66.60 Aligned_cols=93 Identities=13% Similarity=0.174 Sum_probs=66.5
Q ss_pred HHhhcCCcEEEEEEECCCCccCCC--hhHH--HHHHHHhcCccEEEEEeCcc--chhhHhHhCCccCCCcEEEEeccCCC
Q 013319 211 KEIVEKGMTWLLFFYSPSSNRDGY--ESVI--EEVANSMEGALKVGSINCET--EASLCKELGVHRPRSPRIFAYSYKAG 284 (445)
Q Consensus 211 ~~v~~~~~~~lV~Fyap~C~~C~~--~p~~--~~~a~~l~~~v~~~~Vdc~~--~~~lc~~~~I~~~~~Pti~~f~~~~~ 284 (445)
+.....++..+|.|+++||..|+. ..+| .++.+.++..+-+..+|.+. ...++..+++.++ |++.++....+
T Consensus 21 ~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~--P~~~~l~~~~g 98 (122)
T smart00594 21 QEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSF--PYVAIVDPRTG 98 (122)
T ss_pred HHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCC--CEEEEEecCCC
Confidence 445566778999999999999998 5556 45666666666666677654 4578999999999 99999943211
Q ss_pred CC-CC-eeeecCcccHHHHHHHH
Q 013319 285 DK-GS-LVEYNEHLVAKNLKSFC 305 (445)
Q Consensus 285 ~~-g~-~~~y~g~~~~~~l~~fi 305 (445)
.. .. .....|..+.++|++++
T Consensus 99 ~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 99 QRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred ceeEEEeccccCCCCHHHHHHhh
Confidence 00 01 22477888889988775
No 178
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.08 E-value=2.3e-05 Score=64.32 Aligned_cols=80 Identities=8% Similarity=0.037 Sum_probs=56.7
Q ss_pred cCCCCEEEEEecCCC-----ChHHHHHHHHHhhc------cceEEEEeecCCChHHHHHcCCCCCCeEEEEccCC-cccc
Q 013319 328 KARLPSVLLLSTKKE-----TPIIWRVLSGMYHE------RLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNG-EKDV 395 (445)
Q Consensus 328 ~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~------~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~-~~~~ 395 (445)
....+++|.|+.... ..+.|..+|..+++ .+.|+.++.. .+.+++++|+|+++||+++|..+. ....
T Consensus 16 ~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d-~~~~l~~~~~v~~~Ptl~~~~~g~~~~~~ 94 (108)
T cd02996 16 QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD-KESDIADRYRINKYPTLKLFRNGMMMKRE 94 (108)
T ss_pred hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC-CCHHHHHhCCCCcCCEEEEEeCCcCccee
Confidence 445677888876543 36778888887643 3556444333 578999999999999999887655 3467
Q ss_pred cccccChhhHHHH
Q 013319 396 LKTGISVKDQKSS 408 (445)
Q Consensus 396 ~~~~~~~~~~~~~ 408 (445)
|.+..+.++|+.+
T Consensus 95 ~~g~~~~~~l~~f 107 (108)
T cd02996 95 YRGQRSVEALAEF 107 (108)
T ss_pred cCCCCCHHHHHhh
Confidence 7787777777654
No 179
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.7e-05 Score=67.81 Aligned_cols=84 Identities=12% Similarity=0.230 Sum_probs=66.7
Q ss_pred ccCCCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccC
Q 013319 327 AKARLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGIS 401 (445)
Q Consensus 327 ~~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~ 401 (445)
.+.+.|++|.|+..+- ..+.+..++.+|.++++|+.++++ ++.+++.+|+|+.+||+++|+++++.+-+-+..+
T Consensus 58 i~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD-~~~ela~~Y~I~avPtvlvfknGe~~d~~vG~~~ 136 (150)
T KOG0910|consen 58 INSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTD-EHPELAEDYEISAVPTVLVFKNGEKVDRFVGAVP 136 (150)
T ss_pred HccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccc-cccchHhhcceeeeeEEEEEECCEEeeeecccCC
Confidence 5677899999976543 478999999999999999776654 6789999999999999999888877766666666
Q ss_pred hhhHHHHHHH
Q 013319 402 VKDQKSSIHE 411 (445)
Q Consensus 402 ~~~~~~~~~~ 411 (445)
.+.+.+++++
T Consensus 137 ~~~l~~~i~k 146 (150)
T KOG0910|consen 137 KEQLRSLIKK 146 (150)
T ss_pred HHHHHHHHHH
Confidence 6566555544
No 180
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.07 E-value=9.7e-06 Score=83.45 Aligned_cols=102 Identities=13% Similarity=0.124 Sum_probs=73.2
Q ss_pred cccChh-hHHHHhhcCC-cEEEEEEECCCCccCCC-hh-HHHHHHHHhc-CccEEEEEeCccc----hhhHhHhCCccCC
Q 013319 202 RALNLQ-VFKKEIVEKG-MTWLLFFYSPSSNRDGY-ES-VIEEVANSME-GALKVGSINCETE----ASLCKELGVHRPR 272 (445)
Q Consensus 202 ~~Lt~~-~f~~~v~~~~-~~~lV~Fyap~C~~C~~-~p-~~~~~a~~l~-~~v~~~~Vdc~~~----~~lc~~~~I~~~~ 272 (445)
..++.. ..++.+.+.. ++++|.|||+||-.||. ++ ++.+.....+ ..+...++|.+++ .++-+++++-+.
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~- 535 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGV- 535 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCC-
Confidence 455544 6655544333 39999999999999999 54 5533333332 2678889998876 477899999999
Q ss_pred CcEEEEeccCCCCCCCeeeecCcccHHHHHHHHHhh
Q 013319 273 SPRIFAYSYKAGDKGSLVEYNEHLVAKNLKSFCRDH 308 (445)
Q Consensus 273 ~Pti~~f~~~~~~~g~~~~y~g~~~~~~l~~fi~~~ 308 (445)
|++++|+.+ +.++..-.|..+.+.+.+++++.
T Consensus 536 -P~~~ff~~~---g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 536 -PTYLFFGPQ---GSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred -CEEEEECCC---CCcCcCCcceecHHHHHHHHHHh
Confidence 999999532 12333478888999999999764
No 181
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.07 E-value=3.1e-05 Score=63.41 Aligned_cols=82 Identities=9% Similarity=0.071 Sum_probs=62.2
Q ss_pred cCCCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecC-CChHHHHHcCCCCCCeEEEEccCC-----ccccc
Q 013319 328 KARLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHD-VSDPAVKKLGVDALPAIVGWLSNG-----EKDVL 396 (445)
Q Consensus 328 ~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~-~~~~l~~~f~V~~~Ptlv~~~~~~-----~~~~~ 396 (445)
..+.+++|.|+.... ..+.|.++|..+.+.+.|+.++... .+.+++++|+|.++||+++|.+++ ....|
T Consensus 16 ~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~ 95 (109)
T cd03002 16 NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDY 95 (109)
T ss_pred cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCcccccccccc
Confidence 446678888876542 3578999999998888776555443 267899999999999999998875 34578
Q ss_pred ccccChhhHHHHH
Q 013319 397 KTGISVKDQKSSI 409 (445)
Q Consensus 397 ~~~~~~~~~~~~~ 409 (445)
.+..+.+++++++
T Consensus 96 ~G~~~~~~l~~fi 108 (109)
T cd03002 96 NGERSAKAIVDFV 108 (109)
T ss_pred cCccCHHHHHHHh
Confidence 8888887776665
No 182
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.06 E-value=1e-05 Score=60.96 Aligned_cols=67 Identities=13% Similarity=0.190 Sum_probs=50.8
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchh----hHhHhCCccCCCcEEEEeccCCCCCCCeeeecCc
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEAS----LCKELGVHRPRSPRIFAYSYKAGDKGSLVEYNEH 295 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~----lc~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g~ 295 (445)
+..|+++||++|+. .+.+++ ..+.+..+|++.++. +++.+++.++ |+|++. |+. ..|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~v--P~~~~~-------~~~--~~g- 63 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGV--PVIVIG-------HKI--IVG- 63 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcc--cEEEEC-------CEE--Eee-
Confidence 56899999999999 877764 247888999987754 5677999999 999985 222 444
Q ss_pred ccHHHHHHHH
Q 013319 296 LVAKNLKSFC 305 (445)
Q Consensus 296 ~~~~~l~~fi 305 (445)
.+.++|.+++
T Consensus 64 ~~~~~i~~~i 73 (74)
T TIGR02196 64 FDPEKLDQLL 73 (74)
T ss_pred CCHHHHHHHh
Confidence 3667887776
No 183
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.04 E-value=3e-05 Score=69.23 Aligned_cols=89 Identities=19% Similarity=0.343 Sum_probs=67.0
Q ss_pred CCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCcc-----------------------------chhhHh
Q 013319 216 KGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCET-----------------------------EASLCK 264 (445)
Q Consensus 216 ~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~-----------------------------~~~lc~ 264 (445)
.++++||.||++||+.|.. .+.+.++.+++.. .+.|..|+++. +..+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 4568999999999999999 9999999999974 78999998753 124577
Q ss_pred HhCCccCCCcEEEEeccCCCCCCCeeeecC-----------cccHHHHHHHHHhhCCC
Q 013319 265 ELGVHRPRSPRIFAYSYKAGDKGSLVEYNE-----------HLVAKNLKSFCRDHLPR 311 (445)
Q Consensus 265 ~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g-----------~~~~~~l~~fi~~~lp~ 311 (445)
.|+|... |+++++. ++|+++ |.+ ..+..+|.+.|...+..
T Consensus 104 ~~~v~~~--P~~~lid----~~G~v~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 104 AYGAACT--PDFFLFD----PDGKLV-YRGRIDDSRPGNDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred HcCCCcC--CcEEEEC----CCCeEE-EeecccCCcccccccccHHHHHHHHHHHHcC
Confidence 8899888 9999983 345433 332 23457788877776654
No 184
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.04 E-value=4.3e-06 Score=65.16 Aligned_cols=65 Identities=15% Similarity=0.133 Sum_probs=48.4
Q ss_pred HhhcCCcEEEEEEECCCCccCCC-hhHH---HHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEe
Q 013319 212 EIVEKGMTWLLFFYSPSSNRDGY-ESVI---EEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAY 279 (445)
Q Consensus 212 ~v~~~~~~~lV~Fyap~C~~C~~-~p~~---~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f 279 (445)
...+.++++||.|+++||+.|+. .... .++.+.+...+....||.+.........+ .++ |+++++
T Consensus 12 ~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~--P~~~~l 80 (82)
T PF13899_consen 12 EAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGY--PTFFFL 80 (82)
T ss_dssp HHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSS--SEEEEE
T ss_pred HHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccC--CEEEEe
Confidence 35667889999999999999999 6555 45555466678899999987654432222 567 999987
No 185
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.01 E-value=4.2e-05 Score=61.14 Aligned_cols=81 Identities=12% Similarity=0.225 Sum_probs=59.8
Q ss_pred cCCCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccCh
Q 013319 328 KARLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGISV 402 (445)
Q Consensus 328 ~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~ 402 (445)
..+.+++|.|+..+. ..+.+..++..+.+.+.|+.+++. .++.++++|+|.++|++++|..++....+.+..+.
T Consensus 10 ~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~ 88 (96)
T cd02956 10 STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCD-AQPQIAQQFGVQALPTVYLFAAGQPVDGFQGAQPE 88 (96)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEecc-CCHHHHHHcCCCCCCEEEEEeCCEEeeeecCCCCH
Confidence 345688888876543 367789999999887777655544 67899999999999999988755455567776667
Q ss_pred hhHHHHH
Q 013319 403 KDQKSSI 409 (445)
Q Consensus 403 ~~~~~~~ 409 (445)
++++.++
T Consensus 89 ~~l~~~l 95 (96)
T cd02956 89 EQLRQML 95 (96)
T ss_pred HHHHHHh
Confidence 6665543
No 186
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=1.2e-05 Score=63.75 Aligned_cols=55 Identities=25% Similarity=0.416 Sum_probs=46.7
Q ss_pred CCCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCC
Q 013319 27 AKTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSD 84 (445)
Q Consensus 27 ~~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d 84 (445)
...+..-.||||+++++.+.||+|+||+....|||+..++-... +|+||+++|..
T Consensus 53 Msr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAs---KINEAKdlLe~ 107 (112)
T KOG0723|consen 53 MSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLAS---KINEAKDLLEG 107 (112)
T ss_pred cchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHH---HHHHHHHHHhc
Confidence 33444457999999999999999999999999999999876554 49999999975
No 187
>PLN02412 probable glutathione peroxidase
Probab=98.00 E-value=2.7e-05 Score=69.36 Aligned_cols=41 Identities=7% Similarity=0.160 Sum_probs=37.6
Q ss_pred CcEEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCc
Q 013319 217 GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCE 257 (445)
Q Consensus 217 ~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~ 257 (445)
++++||.||++||+.|+. .|.+.++.+++++ .+.|..|+|+
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 478999999999999998 9999999999986 6999999985
No 188
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.00 E-value=1.5e-05 Score=57.19 Aligned_cols=57 Identities=21% Similarity=0.436 Sum_probs=49.5
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHh---HhCCccCCCcEEEEec
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCK---ELGVHRPRSPRIFAYS 280 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~---~~~I~~~~~Pti~~f~ 280 (445)
++.|+++||++|+. .+.+.++ +.....+.+..++++.....+. .+++..+ |+++++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGV--PTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccc--cEEEEEe
Confidence 57899999999999 9999988 5555689999999999887765 7888999 9999983
No 189
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.99 E-value=2e-05 Score=68.34 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=58.2
Q ss_pred CCcEEEEEEECC-CCccCCC-hhHHHHHHHHhcC-ccEEEEEeCccc---------------------hhhHhHhCCc--
Q 013319 216 KGMTWLLFFYSP-SSNRDGY-ESVIEEVANSMEG-ALKVGSINCETE---------------------ASLCKELGVH-- 269 (445)
Q Consensus 216 ~~~~~lV~Fyap-~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~~---------------------~~lc~~~~I~-- 269 (445)
.+++++|.||+. ||++|+. .|.+.++++.++. .+.+..|+.+.+ ..+.+++++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 466899999999 9999999 9999999998776 588888877654 3678888988
Q ss_pred -------cCCCcEEEEeccCCCCCCCeee-ecCcc
Q 013319 270 -------RPRSPRIFAYSYKAGDKGSLVE-YNEHL 296 (445)
Q Consensus 270 -------~~~~Pti~~f~~~~~~~g~~~~-y~g~~ 296 (445)
.+ |+++++. .+|++.. ..|..
T Consensus 107 ~~~~~~~~~--P~~~lId----~~G~V~~~~~g~~ 135 (146)
T PF08534_consen 107 EDPGNGFGI--PTTFLID----KDGKVVYRHVGPD 135 (146)
T ss_dssp CCTTTTSSS--SEEEEEE----TTSBEEEEEESSB
T ss_pred cccccCCee--cEEEEEE----CCCEEEEEEeCCC
Confidence 88 9998883 4565443 34443
No 190
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.98 E-value=4.6e-05 Score=66.79 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=37.0
Q ss_pred CcEEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeC
Q 013319 217 GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINC 256 (445)
Q Consensus 217 ~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc 256 (445)
++++||.|+++||+.|+. .|.+.++.++++. .+.|..|+|
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 567899999999999999 9999999999986 799999998
No 191
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.96 E-value=0.00023 Score=75.70 Aligned_cols=179 Identities=14% Similarity=0.123 Sum_probs=112.2
Q ss_pred cEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEeccCCCCCCCeeeecCcc
Q 013319 218 MTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYSYKAGDKGSLVEYNEHL 296 (445)
Q Consensus 218 ~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g~~ 296 (445)
.+.|+.|+.+.|..|.. ....++++ .+.+.+++-..|..++..++++|+|... |++.++..+. +...+.|.|-.
T Consensus 367 ~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~~~~~~~~~~v~~~--P~~~i~~~~~--~~~~i~f~g~P 441 (555)
T TIGR03143 367 PVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGEEPESETLPKITKL--PTVALLDDDG--NYTGLKFHGVP 441 (555)
T ss_pred CEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEeccccchhhHhhcCCCcC--CEEEEEeCCC--cccceEEEecC
Confidence 35788899999999999 88888887 5567899988999999999999999999 9999983221 11348899877
Q ss_pred cHHHHHHHHHhhCCC--CceeccccccchhhhccCCCCEEEEE-ecC-CCChHHHH---HHHHHhhccceEEEEeecCCC
Q 013319 297 VAKNLKSFCRDHLPR--FSKRISLNRIEFTFDAKARLPSVLLL-STK-KETPIIWR---VLSGMYHERLNFYDTEVHDVS 369 (445)
Q Consensus 297 ~~~~l~~fi~~~lp~--~~~~i~~~~~~~~~~~~~~~~~vvlF-~~~-~~~~~~~~---~lA~~~~~~~~f~~~~v~~~~ 369 (445)
.-.++..||...+.- ....++.+..+..... +....+-+| +.. ..+|.... .+|.... .+..-.+.+. ..
T Consensus 442 ~G~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~-~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~-~~ 518 (555)
T TIGR03143 442 SGHELNSFILALYNAAGPGQPLGEELLEKIKKI-TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVS-HF 518 (555)
T ss_pred ccHhHHHHHHHHHHhcCCCCCCCHHHHHHHHhc-CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECc-cc
Confidence 777888888765432 1222222222222222 222223343 333 34554333 3333321 3433222222 56
Q ss_pred hHHHHHcCCCCCCeEEEEccCCcccccccccChhhHHHH
Q 013319 370 DPAVKKLGVDALPAIVGWLSNGEKDVLKTGISVKDQKSS 408 (445)
Q Consensus 370 ~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~~~~~~~ 408 (445)
++++++|+|...|++++ |++ .++.+..+.++++..
T Consensus 519 ~~~~~~~~v~~vP~~~i---~~~-~~~~G~~~~~~~~~~ 553 (555)
T TIGR03143 519 PDLKDEYGIMSVPAIVV---DDQ-QVYFGKKTIEEMLEL 553 (555)
T ss_pred HHHHHhCCceecCEEEE---CCE-EEEeeCCCHHHHHHh
Confidence 89999999999999984 333 245555666666543
No 192
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.96 E-value=6.5e-05 Score=60.70 Aligned_cols=80 Identities=11% Similarity=0.105 Sum_probs=60.5
Q ss_pred CCCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccC-CcccccccccCh
Q 013319 329 ARLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSN-GEKDVLKTGISV 402 (445)
Q Consensus 329 ~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~-~~~~~~~~~~~~ 402 (445)
...+++|+|..... ..+.|..+|..+.+.+.|+.++.. .+.+++++|+|.++|++++|..+ .....|.++.+.
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~-~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~ 95 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDAD-VHQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTA 95 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECc-chHHHHHHCCCCccCEEEEECCCCcceeecCCCCCH
Confidence 34567777776532 257789999999888888666543 67889999999999999988776 345578888888
Q ss_pred hhHHHHH
Q 013319 403 KDQKSSI 409 (445)
Q Consensus 403 ~~~~~~~ 409 (445)
++++.|+
T Consensus 96 ~~l~~~~ 102 (103)
T cd03001 96 KAIVSAA 102 (103)
T ss_pred HHHHHHh
Confidence 7776654
No 193
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.95 E-value=7.3e-05 Score=63.24 Aligned_cols=93 Identities=16% Similarity=0.213 Sum_probs=65.8
Q ss_pred ccccccchhhhccCCCCEEEEEecCC-------CChHHHHHHHHHhhc-cceEEEEeecCCChHHHHHcCCCCCCeEEEE
Q 013319 316 ISLNRIEFTFDAKARLPSVLLLSTKK-------ETPIIWRVLSGMYHE-RLNFYDTEVHDVSDPAVKKLGVDALPAIVGW 387 (445)
Q Consensus 316 i~~~~~~~~~~~~~~~~~vvlF~~~~-------~~~~~~~~lA~~~~~-~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~ 387 (445)
++..+++.+.. .....|++|.... ..+.++.+||.+|.+ +++|+.+++. .+++++.+|||.++||+++|
T Consensus 22 ~~~~~~~~~~~--~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD-~~~~LA~~fgV~siPTLl~F 98 (132)
T PRK11509 22 VSESRLDDWLT--QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE-QSEAIGDRFGVFRFPATLVF 98 (132)
T ss_pred cccccHHHHHh--CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECC-CCHHHHHHcCCccCCEEEEE
Confidence 34444444442 3335677775433 247889999999974 5888777665 77999999999999999988
Q ss_pred ccCCcccccccccChhhHHHHHHH
Q 013319 388 LSNGEKDVLKTGISVKDQKSSIHE 411 (445)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~ 411 (445)
+.++....+.+-.+.+++.+++..
T Consensus 99 kdGk~v~~i~G~~~k~~l~~~I~~ 122 (132)
T PRK11509 99 TGGNYRGVLNGIHPWAELINLMRG 122 (132)
T ss_pred ECCEEEEEEeCcCCHHHHHHHHHH
Confidence 888777777666666666555443
No 194
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.95 E-value=3.9e-05 Score=69.02 Aligned_cols=105 Identities=14% Similarity=0.304 Sum_probs=81.3
Q ss_pred CcccccChhhHHHHhhcCCc-EEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEE
Q 013319 199 GNIRALNLQVFKKEIVEKGM-TWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRI 276 (445)
Q Consensus 199 ~~V~~Lt~~~f~~~v~~~~~-~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti 276 (445)
+.|.++|.+++.. +...+. ++++.|+......... ...++++|+++++.+.|+.+||+..+.+++.+++.....|++
T Consensus 77 P~v~~~t~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~ 155 (184)
T PF13848_consen 77 PLVPELTPENFEK-LFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPAL 155 (184)
T ss_dssp TSCEEESTTHHHH-HHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEE
T ss_pred ccccccchhhHHH-HhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEE
Confidence 3489999999966 455554 4788888776666677 888999999999999999999999999999999984333999
Q ss_pred EEeccCCCCCCC-eeeecCcccHHHHHHHHHh
Q 013319 277 FAYSYKAGDKGS-LVEYNEHLVAKNLKSFCRD 307 (445)
Q Consensus 277 ~~f~~~~~~~g~-~~~y~g~~~~~~l~~fi~~ 307 (445)
+++... .+. ...+.+..+.+.|.+|+.+
T Consensus 156 vi~~~~---~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 156 VIFDSN---KGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEEETT---TSEEEE--SSCGCHHHHHHHHHH
T ss_pred EEEECC---CCcEEcCCCCCCCHHHHHHHhcC
Confidence 998421 222 1224788899999999964
No 195
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.94 E-value=4e-05 Score=58.75 Aligned_cols=72 Identities=21% Similarity=0.335 Sum_probs=55.3
Q ss_pred EEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEeccCCCCCCCeeeecC-cccHH
Q 013319 222 LFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYSYKAGDKGSLVEYNE-HLVAK 299 (445)
Q Consensus 222 V~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g-~~~~~ 299 (445)
|.+++++|++|.. ...+++++..+ + +.+-.++..+.+.+ .+|||.++ |++++ +|+ +.+.| ..+.+
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~~~~~-~~ygv~~v--PalvI-------ng~-~~~~G~~p~~~ 69 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIEDFEEI-EKYGVMSV--PALVI-------NGK-VVFVGRVPSKE 69 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTTHHHH-HHTT-SSS--SEEEE-------TTE-EEEESS--HHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccCHHHH-HHcCCCCC--CEEEE-------CCE-EEEEecCCCHH
Confidence 4457999999999 99999999998 3 77777777555556 99999999 99976 343 67888 66778
Q ss_pred HHHHHHH
Q 013319 300 NLKSFCR 306 (445)
Q Consensus 300 ~l~~fi~ 306 (445)
+|.+|++
T Consensus 70 el~~~l~ 76 (76)
T PF13192_consen 70 ELKELLE 76 (76)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 8998874
No 196
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.93 E-value=1.7e-05 Score=65.53 Aligned_cols=68 Identities=7% Similarity=0.031 Sum_probs=54.6
Q ss_pred cCCCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCccccc
Q 013319 328 KARLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVL 396 (445)
Q Consensus 328 ~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~ 396 (445)
+.+.+++|.|+..+. ..+.+.++|.++.+.+.|+.+++. .+++++++|+|.+.||+++|++++.....
T Consensus 12 ~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD-~~~~la~~~~V~~iPTf~~fk~G~~v~~~ 84 (114)
T cd02954 12 EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDID-EVPDFNKMYELYDPPTVMFFFRNKHMKID 84 (114)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECC-CCHHHHHHcCCCCCCEEEEEECCEEEEEE
Confidence 356678888876654 368899999999988888777766 67999999999999999988876654443
No 197
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.93 E-value=4.5e-05 Score=61.84 Aligned_cols=80 Identities=13% Similarity=0.138 Sum_probs=60.2
Q ss_pred ccCCCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccC
Q 013319 327 AKARLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGIS 401 (445)
Q Consensus 327 ~~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~ 401 (445)
...+++++|.|+.... ..+.|.++|..+++ +.|+.+.....++.++++|+|.++||+++|..+ ....|.+..+
T Consensus 15 ~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~ 92 (100)
T cd02999 15 FNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRT 92 (100)
T ss_pred hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCC
Confidence 3456788998886543 36889999999875 666554333246889999999999999988776 6667888887
Q ss_pred hhhHHHH
Q 013319 402 VKDQKSS 408 (445)
Q Consensus 402 ~~~~~~~ 408 (445)
.+++++|
T Consensus 93 ~~~l~~f 99 (100)
T cd02999 93 LDSLAAF 99 (100)
T ss_pred HHHHHhh
Confidence 7777655
No 198
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.90 E-value=2.7e-05 Score=63.22 Aligned_cols=61 Identities=25% Similarity=0.461 Sum_probs=55.9
Q ss_pred CcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCc-cchhhHhHhC--CccCCCcEEEEe
Q 013319 217 GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCE-TEASLCKELG--VHRPRSPRIFAY 279 (445)
Q Consensus 217 ~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~-~~~~lc~~~~--I~~~~~Pti~~f 279 (445)
+.+.+|.||++||++|+. .|.+.++++++...+.+..+|.. ..+.+...++ +..+ |++.++
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--p~~~~~ 96 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSI--PTLLLF 96 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccC--CeEEEE
Confidence 568899999999999999 99999999999877999999997 7899999999 8999 999877
No 199
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.90 E-value=4.8e-05 Score=66.59 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=36.2
Q ss_pred CcEEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCc
Q 013319 217 GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCE 257 (445)
Q Consensus 217 ~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~ 257 (445)
+++++|.||+.||+ |+. .|.++++.++++. .+.+..|+++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 57899999999999 999 9999999999975 6899999874
No 200
>PRK10996 thioredoxin 2; Provisional
Probab=97.89 E-value=8.6e-05 Score=64.04 Aligned_cols=83 Identities=13% Similarity=0.199 Sum_probs=61.5
Q ss_pred cCCCCEEEEEecCCCC-----hHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccCh
Q 013319 328 KARLPSVLLLSTKKET-----PIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGISV 402 (445)
Q Consensus 328 ~~~~~~vvlF~~~~~~-----~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~ 402 (445)
..+++++|.|+..+.. .+.+..++..+.+.+.|+.+++. .+++++++|+|.++|++++|..++....+.+..+.
T Consensus 50 ~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~-~~~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~ 128 (139)
T PRK10996 50 QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE-AERELSARFRIRSIPTIMIFKNGQVVDMLNGAVPK 128 (139)
T ss_pred hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC-CCHHHHHhcCCCccCEEEEEECCEEEEEEcCCCCH
Confidence 3456888888876543 46788899888888888666544 67899999999999999988755555566676666
Q ss_pred hhHHHHHHH
Q 013319 403 KDQKSSIHE 411 (445)
Q Consensus 403 ~~~~~~~~~ 411 (445)
++++.++..
T Consensus 129 e~l~~~l~~ 137 (139)
T PRK10996 129 APFDSWLNE 137 (139)
T ss_pred HHHHHHHHH
Confidence 667666553
No 201
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.89 E-value=6.5e-05 Score=62.11 Aligned_cols=83 Identities=12% Similarity=0.217 Sum_probs=59.3
Q ss_pred cCCCCEEEEEecCCC-----ChHHHHHHHHHhhc-cceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccC
Q 013319 328 KARLPSVLLLSTKKE-----TPIIWRVLSGMYHE-RLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGIS 401 (445)
Q Consensus 328 ~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~-~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~ 401 (445)
..++|++|.|+.... ..+.+.+++..+++ .+.|+.+++. .++.++++++|.++||+++|..++....+.+..+
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d-~~~~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~~~ 100 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG-HERRLARKLGAHSVPAIVGIINGQVTFYHDSSFT 100 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc-ccHHHHHHcCCccCCEEEEEECCEEEEEecCCCC
Confidence 356789999976543 25788999999976 3667555433 5688999999999999998875544444555566
Q ss_pred hhhHHHHHHH
Q 013319 402 VKDQKSSIHE 411 (445)
Q Consensus 402 ~~~~~~~~~~ 411 (445)
.+++++++++
T Consensus 101 ~~~l~~~i~~ 110 (111)
T cd02963 101 KQHVVDFVRK 110 (111)
T ss_pred HHHHHHHHhc
Confidence 6777666553
No 202
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.86 E-value=0.00011 Score=59.09 Aligned_cols=82 Identities=9% Similarity=0.084 Sum_probs=61.1
Q ss_pred CCCCEEEEEecCCC-----ChHHHHHHHHHhhc--cceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccC
Q 013319 329 ARLPSVLLLSTKKE-----TPIIWRVLSGMYHE--RLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGIS 401 (445)
Q Consensus 329 ~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~--~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~ 401 (445)
...+++|.|+.... ..+.+..+|..+.+ .+.|+.+... .+..++++|+|..+|++++|..++....|.+..+
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~ 90 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT-AEKDLASRFGVSGFPTIKFFPKGKKPVDYEGGRD 90 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc-chHHHHHhCCCCcCCEEEEecCCCcceeecCCCC
Confidence 56788888876543 24678888988877 4666443322 6789999999999999998888876667888777
Q ss_pred hhhHHHHHHH
Q 013319 402 VKDQKSSIHE 411 (445)
Q Consensus 402 ~~~~~~~~~~ 411 (445)
.++++.++++
T Consensus 91 ~~~l~~~i~~ 100 (102)
T TIGR01126 91 LEAIVEFVNE 100 (102)
T ss_pred HHHHHHHHHh
Confidence 7777666654
No 203
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.86 E-value=0.00014 Score=58.27 Aligned_cols=93 Identities=19% Similarity=0.318 Sum_probs=69.5
Q ss_pred ccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEecc
Q 013319 203 ALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYSY 281 (445)
Q Consensus 203 ~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~ 281 (445)
+++..+..+.++....+++|-|+.++|. . ...|.++|..+...+.|+.++ +..+.+++++. . |++++|..
T Consensus 3 ~i~s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~--~~i~l~~~ 73 (97)
T cd02981 3 ELTSKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-P--GSVVLFKP 73 (97)
T ss_pred ecCCHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-C--CceEEeCC
Confidence 4443333233456777899999998876 5 889999999998888998876 56777777664 3 88999843
Q ss_pred CCCCCCCeeeecCcccHHHHHHHHHh
Q 013319 282 KAGDKGSLVEYNEHLVAKNLKSFCRD 307 (445)
Q Consensus 282 ~~~~~g~~~~y~g~~~~~~l~~fi~~ 307 (445)
. ......|.|..+.++|.+||..
T Consensus 74 ~---~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 74 F---EEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred c---ccCCccCCCCCCHHHHHHHHHh
Confidence 2 2345779999888999999964
No 204
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.83 E-value=4e-05 Score=64.76 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=41.5
Q ss_pred HHhhcCCcEEEEEEECCCCccCCC-hh-HH--HHHHHHhcCccEEEEEeCccc-hhhHhHhCCccCCCcEEEEec
Q 013319 211 KEIVEKGMTWLLFFYSPSSNRDGY-ES-VI--EEVANSMEGALKVGSINCETE-ASLCKELGVHRPRSPRIFAYS 280 (445)
Q Consensus 211 ~~v~~~~~~~lV~Fyap~C~~C~~-~p-~~--~~~a~~l~~~v~~~~Vdc~~~-~~lc~~~~I~~~~~Pti~~f~ 280 (445)
+...+++++++|.||++||++|+. .. .| .++++.++..+....++.+.. ..+. ..+ ..+ ||++++.
T Consensus 17 ~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~v--PtivFld 87 (130)
T cd02960 17 YKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYV--PRIMFVD 87 (130)
T ss_pred HHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-ccc--CeEEEEC
Confidence 335667889999999999999999 44 44 345555543343344554321 1111 233 567 9999994
No 205
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.82 E-value=0.00014 Score=58.92 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=57.4
Q ss_pred CCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCC--CCCeEEEEccC-Cccccccccc-
Q 013319 330 RLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVD--ALPAIVGWLSN-GEKDVLKTGI- 400 (445)
Q Consensus 330 ~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~--~~Ptlv~~~~~-~~~~~~~~~~- 400 (445)
+.|++++|...+. ..+.++.+|.+|++++.|+.+++. .+..+++.|+|. ++|+++++..+ +..-.+..+.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~-~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~ 90 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDAD-DFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEEL 90 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchH-hhHHHHHHcCCChhhCCEEEEEecccccccCCCcccc
Confidence 5688888875433 378899999999999999776554 457799999999 89999988884 2222233333
Q ss_pred ChhhHHHHHH
Q 013319 401 SVKDQKSSIH 410 (445)
Q Consensus 401 ~~~~~~~~~~ 410 (445)
+.++|.++++
T Consensus 91 ~~~~l~~fi~ 100 (103)
T cd02982 91 TAESLEEFVE 100 (103)
T ss_pred CHHHHHHHHH
Confidence 5555655544
No 206
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.81 E-value=0.00012 Score=58.33 Aligned_cols=78 Identities=8% Similarity=0.037 Sum_probs=57.5
Q ss_pred CCCCEEEEEecCCC-----ChHHHHHHHHHh--hccceEEEEeecCCChHHHHHcCCCCCCeEEEEccC-Cccccccccc
Q 013319 329 ARLPSVLLLSTKKE-----TPIIWRVLSGMY--HERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSN-GEKDVLKTGI 400 (445)
Q Consensus 329 ~~~~~vvlF~~~~~-----~~~~~~~lA~~~--~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~-~~~~~~~~~~ 400 (445)
...+++|+|+.... ..+.|..++..+ ...+.|+.++.. .+..++++|+|..+|+++++.++ .....|.+..
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~ 92 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT-ANNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPR 92 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc-chHHHHHhCCCCCCCEEEEEcCCCcccccCCCCc
Confidence 33488888877642 367788888888 467777555433 46899999999999999988877 5666777777
Q ss_pred ChhhHHH
Q 013319 401 SVKDQKS 407 (445)
Q Consensus 401 ~~~~~~~ 407 (445)
+.+++.+
T Consensus 93 ~~~~i~~ 99 (101)
T cd02961 93 TLESLVE 99 (101)
T ss_pred CHHHHHh
Confidence 6666644
No 207
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.81 E-value=6.4e-05 Score=71.69 Aligned_cols=99 Identities=16% Similarity=0.294 Sum_probs=70.4
Q ss_pred ccccC-hhhHHHHhhcCC--cEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEE
Q 013319 201 IRALN-LQVFKKEIVEKG--MTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRI 276 (445)
Q Consensus 201 V~~Lt-~~~f~~~v~~~~--~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti 276 (445)
|.+|+ .+.|.+.|.+.. ..+||.||.|.++.|.. ...+..||.++. .++|.+|....-+ ++.+|.+... |||
T Consensus 127 v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-~vKFvkI~a~~~~-~~~~f~~~~L--Ptl 202 (265)
T PF02114_consen 127 VYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-EVKFVKIRASKCP-ASENFPDKNL--PTL 202 (265)
T ss_dssp EEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-TSEEEEEEECGCC-TTTTS-TTC---SEE
T ss_pred EEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEEehhccC-cccCCcccCC--CEE
Confidence 78885 578877765443 36899999999999999 999999999984 6999999987655 7889999999 999
Q ss_pred EEeccCCCCCCCeee-ecC-------cccHHHHHHHHHhh
Q 013319 277 FAYSYKAGDKGSLVE-YNE-------HLVAKNLKSFCRDH 308 (445)
Q Consensus 277 ~~f~~~~~~~g~~~~-y~g-------~~~~~~l~~fi~~~ 308 (445)
++|. +|..+. +.+ ..+.++|..|+.++
T Consensus 203 lvYk-----~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 203 LVYK-----NGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEE-----TTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEEE-----CCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 9994 443322 222 44668899998853
No 208
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00012 Score=69.50 Aligned_cols=86 Identities=8% Similarity=0.168 Sum_probs=71.7
Q ss_pred ccCCCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccC
Q 013319 327 AKARLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGIS 401 (445)
Q Consensus 327 ~~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~ 401 (445)
....+|++|+|+.... ..+.+..++..|++++.++.++++ .++.++.+|||.+.||+++|..+.-..-|.+...
T Consensus 40 ~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D-~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qP 118 (304)
T COG3118 40 SSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCD-AEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQP 118 (304)
T ss_pred HccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCC-cchhHHHHhCcCcCCeEEEeeCCcCccccCCCCc
Confidence 4566699999987654 368899999999999999777655 6799999999999999999998888888888888
Q ss_pred hhhHHHHHHHHH
Q 013319 402 VKDQKSSIHELS 413 (445)
Q Consensus 402 ~~~~~~~~~~~~ 413 (445)
...+++++..+.
T Consensus 119 esqlr~~ld~~~ 130 (304)
T COG3118 119 ESQLRQFLDKVL 130 (304)
T ss_pred HHHHHHHHHHhc
Confidence 878888877654
No 209
>PRK09381 trxA thioredoxin; Provisional
Probab=97.79 E-value=0.00025 Score=58.09 Aligned_cols=83 Identities=12% Similarity=0.130 Sum_probs=59.8
Q ss_pred cCCCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccCh
Q 013319 328 KARLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGISV 402 (445)
Q Consensus 328 ~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~ 402 (445)
..+.+++|.|+.... ..+.+..++..+.+.+.|+.+.+. .+..++++|+|..+||+++|..+.....+.+..+.
T Consensus 19 ~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~-~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~ 97 (109)
T PRK09381 19 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID-QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSK 97 (109)
T ss_pred cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECC-CChhHHHhCCCCcCCEEEEEeCCeEEEEecCCCCH
Confidence 346678888876543 367889999999888877665544 56889999999999999988645444456565666
Q ss_pred hhHHHHHHH
Q 013319 403 KDQKSSIHE 411 (445)
Q Consensus 403 ~~~~~~~~~ 411 (445)
++++.++..
T Consensus 98 ~~l~~~i~~ 106 (109)
T PRK09381 98 GQLKEFLDA 106 (109)
T ss_pred HHHHHHHHH
Confidence 666555543
No 210
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=2.5e-05 Score=83.81 Aligned_cols=55 Identities=33% Similarity=0.590 Sum_probs=46.8
Q ss_pred CCcCcccccCCCCC----CCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCC
Q 013319 28 KTVDLYKVLGVERN----ASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSD 84 (445)
Q Consensus 28 ~~~d~y~vLgv~~~----a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d 84 (445)
...+.|+||.|+-+ -..+.||++|+||+.+||||||+ +-.+.|.++++||+.|..
T Consensus 1279 S~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP--EGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1279 SVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP--EGREMFERVNKAYELLSS 1337 (2235)
T ss_pred chHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHHH
Confidence 34578999999864 23588999999999999999996 457899999999999983
No 211
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.78 E-value=0.00017 Score=67.12 Aligned_cols=82 Identities=10% Similarity=0.043 Sum_probs=60.6
Q ss_pred CCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccChhh
Q 013319 330 RLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGISVKD 404 (445)
Q Consensus 330 ~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~~~ 404 (445)
..+++|.|+..+. ..+.|.++|..+++.+.|+.+++. .+++++++|+|+++||+++|..+.....+.+..+.++
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~-~~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~ 130 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDAT-RALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEK 130 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCc-ccHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHH
Confidence 5688999987653 257799999999988888555433 6789999999999999998885544444444567777
Q ss_pred HHHHHHHH
Q 013319 405 QKSSIHEL 412 (445)
Q Consensus 405 ~~~~~~~~ 412 (445)
+++++...
T Consensus 131 L~~fi~~~ 138 (224)
T PTZ00443 131 LAAFALGD 138 (224)
T ss_pred HHHHHHHH
Confidence 76665544
No 212
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.75 E-value=0.00014 Score=65.39 Aligned_cols=78 Identities=9% Similarity=0.189 Sum_probs=57.4
Q ss_pred CcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEE------EEEeCccc-----------------------------h
Q 013319 217 GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKV------GSINCETE-----------------------------A 260 (445)
Q Consensus 217 ~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~------~~Vdc~~~-----------------------------~ 260 (445)
++++||.|+|.||+.|+. .|.+++++.. .+.+ ..||.++. .
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g 135 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKG 135 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcc
Confidence 789999999999999999 9999999653 2444 56665542 2
Q ss_pred hhHhHhCCccCCCcEE-EEeccCCCCCCCee-eecCcccHHHHHH
Q 013319 261 SLCKELGVHRPRSPRI-FAYSYKAGDKGSLV-EYNEHLVAKNLKS 303 (445)
Q Consensus 261 ~lc~~~~I~~~~~Pti-~~f~~~~~~~g~~~-~y~g~~~~~~l~~ 303 (445)
.+...+++.++ |+- +++ .++|++. .+.|..+.+++.+
T Consensus 136 ~v~~~~gv~~~--P~T~fVI----Dk~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 136 AVKNAWQLNSE--DSAIIVL----DKTGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred hHHHhcCCCCC--CceEEEE----CCCCcEEEEEeCCCCHHHHHH
Confidence 34567888888 887 676 3466544 4788888777766
No 213
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.74 E-value=0.00017 Score=58.10 Aligned_cols=76 Identities=9% Similarity=0.133 Sum_probs=55.6
Q ss_pred CEEEEEecCCC-----ChHHHHHHHHHhhc---cceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccChh
Q 013319 332 PSVLLLSTKKE-----TPIIWRVLSGMYHE---RLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGISVK 403 (445)
Q Consensus 332 ~~vvlF~~~~~-----~~~~~~~lA~~~~~---~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~~ 403 (445)
+++|.|+.... ..+.+..++..+++ .+.|+.++.. .+..++++|+|..+||+++|..++....|.+..+.+
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~ 96 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT-QHRELCSEFQVRGYPTLLLFKDGEKVDKYKGTRDLD 96 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC-CChhhHhhcCCCcCCEEEEEeCCCeeeEeeCCCCHH
Confidence 47777776542 25679999999976 5666554433 567899999999999999996666566787877776
Q ss_pred hHHHH
Q 013319 404 DQKSS 408 (445)
Q Consensus 404 ~~~~~ 408 (445)
+++++
T Consensus 97 ~l~~~ 101 (102)
T cd03005 97 SLKEF 101 (102)
T ss_pred HHHhh
Confidence 66544
No 214
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.74 E-value=0.00021 Score=57.68 Aligned_cols=80 Identities=10% Similarity=0.060 Sum_probs=57.1
Q ss_pred CCCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCC--cccccccccC
Q 013319 329 ARLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNG--EKDVLKTGIS 401 (445)
Q Consensus 329 ~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~--~~~~~~~~~~ 401 (445)
.+++++|+|+.... ..+.|..+|..+.+...+..+.++.+..+++..+++.++|++++|..++ ....|.+..+
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~~ 96 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILFFPAGDKSNPIKYEGDRT 96 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEEEcCCCcCCceEccCCcC
Confidence 34678888876542 3678999999887743333344455445788999999999999998876 4556788877
Q ss_pred hhhHHHH
Q 013319 402 VKDQKSS 408 (445)
Q Consensus 402 ~~~~~~~ 408 (445)
.+++..|
T Consensus 97 ~~~l~~f 103 (104)
T cd02995 97 LEDLIKF 103 (104)
T ss_pred HHHHHhh
Confidence 7777654
No 215
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.74 E-value=0.00018 Score=59.17 Aligned_cols=81 Identities=10% Similarity=0.071 Sum_probs=57.2
Q ss_pred cCCCCEEEEEecCCC-----ChHHHHHHHHHhhcc-ceEEEEeecCCChHHHH-HcCCCCCCeEEEEccCC-cccccccc
Q 013319 328 KARLPSVLLLSTKKE-----TPIIWRVLSGMYHER-LNFYDTEVHDVSDPAVK-KLGVDALPAIVGWLSNG-EKDVLKTG 399 (445)
Q Consensus 328 ~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~-~~f~~~~v~~~~~~l~~-~f~V~~~Ptlv~~~~~~-~~~~~~~~ 399 (445)
..+++++|.|+.... ..+.|..+|..+++. +.|+.+++..++..+++ .++|..+||+++|..++ ....|.++
T Consensus 19 ~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~~~~~~~~y~g~ 98 (109)
T cd02993 19 RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFPKNSRQPIKYPSE 98 (109)
T ss_pred hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcCCCCCceeccCC
Confidence 456788888876543 256789999999864 66755544433467776 49999999999887754 45578774
Q ss_pred -cChhhHHHH
Q 013319 400 -ISVKDQKSS 408 (445)
Q Consensus 400 -~~~~~~~~~ 408 (445)
++.++|+.|
T Consensus 99 ~~~~~~l~~f 108 (109)
T cd02993 99 QRDVDSLLMF 108 (109)
T ss_pred CCCHHHHHhh
Confidence 677666554
No 216
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.73 E-value=0.00029 Score=59.92 Aligned_cols=109 Identities=14% Similarity=0.146 Sum_probs=79.3
Q ss_pred cccccChhhHHHHhhcCCcEEEEEEECCC---Ccc-CCC--hhHHHHHHHHhcCc-cEEEEEeCccchhhHhHhCCccCC
Q 013319 200 NIRALNLQVFKKEIVEKGMTWLLFFYSPS---SNR-DGY--ESVIEEVANSMEGA-LKVGSINCETEASLCKELGVHRPR 272 (445)
Q Consensus 200 ~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~---C~~-C~~--~p~~~~~a~~l~~~-v~~~~Vdc~~~~~lc~~~~I~~~~ 272 (445)
.|++|+.+++.+..=..+...+|.| -|. |.. +.. ...++++|+++++. +.|+-+|.++...+.+.+||....
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~-l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~ 81 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAF-LPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFG 81 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEE-cCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccC
Confidence 5788887776443333344555555 443 332 433 78899999999998 999999999999999999997633
Q ss_pred CcEEEEeccCCCCCCCeeeecCcccHHHHHHHHHhhCCCC
Q 013319 273 SPRIFAYSYKAGDKGSLVEYNEHLVAKNLKSFCRDHLPRF 312 (445)
Q Consensus 273 ~Pti~~f~~~~~~~g~~~~y~g~~~~~~l~~fi~~~lp~~ 312 (445)
+|+++++... +++...+.|+.+.++|.+|+.+.+...
T Consensus 82 ~P~v~i~~~~---~~KY~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 82 YPAMVAINFR---KMKFATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred CCEEEEEecc---cCccccccCccCHHHHHHHHHHHHcCC
Confidence 4999998431 223333779999999999999887653
No 217
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.71 E-value=0.00022 Score=57.57 Aligned_cols=80 Identities=5% Similarity=-0.027 Sum_probs=56.9
Q ss_pred CCCCEEEEEecCCC-----ChHHHHHHHHHhh--ccceEEEEeecC-CChHHHHHcCCCCCCeEEEEccCCccccccccc
Q 013319 329 ARLPSVLLLSTKKE-----TPIIWRVLSGMYH--ERLNFYDTEVHD-VSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGI 400 (445)
Q Consensus 329 ~~~~~vvlF~~~~~-----~~~~~~~lA~~~~--~~~~f~~~~v~~-~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~ 400 (445)
...+++|+|+.... .-+.+..++..+. +.+.|+.+.+.. .+..++++++|..+|++++|..++....|.+..
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~ 95 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGKFVEKYEGER 95 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCCeeEEeCCCC
Confidence 44588888876543 2566788888886 455565544442 278999999999999999887666566788877
Q ss_pred ChhhHHHH
Q 013319 401 SVKDQKSS 408 (445)
Q Consensus 401 ~~~~~~~~ 408 (445)
+.+++..+
T Consensus 96 ~~~~l~~~ 103 (104)
T cd02997 96 TAEDIIEF 103 (104)
T ss_pred CHHHHHhh
Confidence 77666543
No 218
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.65 E-value=0.00039 Score=56.13 Aligned_cols=79 Identities=11% Similarity=0.138 Sum_probs=57.1
Q ss_pred CCCCEEEEEecCCC-----ChHHHHHHHHHhh--ccceEEEEeecCC-ChHHHHHcCCCCCCeEEEEccC-Ccccccccc
Q 013319 329 ARLPSVLLLSTKKE-----TPIIWRVLSGMYH--ERLNFYDTEVHDV-SDPAVKKLGVDALPAIVGWLSN-GEKDVLKTG 399 (445)
Q Consensus 329 ~~~~~vvlF~~~~~-----~~~~~~~lA~~~~--~~~~f~~~~v~~~-~~~l~~~f~V~~~Ptlv~~~~~-~~~~~~~~~ 399 (445)
..+++++.|+.... ..+.|..++..+. +.+.|+.++.. . +..++++|+|.++|++++|..+ .....|.+.
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~ 95 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDAD-EANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGG 95 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECC-CcchhhHHhCCCCCcCEEEEEeCCCCCccccCCc
Confidence 45578888876543 2578999999887 34556444433 4 6899999999999999988876 356677777
Q ss_pred cChhhHHHH
Q 013319 400 ISVKDQKSS 408 (445)
Q Consensus 400 ~~~~~~~~~ 408 (445)
.+.+++..+
T Consensus 96 ~~~~~l~~~ 104 (105)
T cd02998 96 RDLEDLVKF 104 (105)
T ss_pred cCHHHHHhh
Confidence 777666544
No 219
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.64 E-value=0.00042 Score=55.88 Aligned_cols=76 Identities=16% Similarity=0.082 Sum_probs=54.6
Q ss_pred EEEEEecCCC-----ChHHHHHHHHHhhc-cceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccChhhHH
Q 013319 333 SVLLLSTKKE-----TPIIWRVLSGMYHE-RLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGISVKDQK 406 (445)
Q Consensus 333 ~vvlF~~~~~-----~~~~~~~lA~~~~~-~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~~~~~ 406 (445)
++|.|+.... ..+.|..++..+++ .+.|+.+++. .+..++++|+|+++||++++.. +....|.+..+.++|+
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~-~~~~~~~~~~i~~~Pt~~~~~~-g~~~~~~G~~~~~~l~ 96 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVT-QEPGLSGRFFVTALPTIYHAKD-GVFRRYQGPRDKEDLI 96 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc-CCHhHHHHcCCcccCEEEEeCC-CCEEEecCCCCHHHHH
Confidence 6777776542 36789999987764 4666554433 5688999999999999998754 4456777777777776
Q ss_pred HHHH
Q 013319 407 SSIH 410 (445)
Q Consensus 407 ~~~~ 410 (445)
.++.
T Consensus 97 ~~i~ 100 (101)
T cd02994 97 SFIE 100 (101)
T ss_pred HHHh
Confidence 6553
No 220
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.64 E-value=0.00051 Score=54.87 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=57.3
Q ss_pred CCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccChhh
Q 013319 330 RLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGISVKD 404 (445)
Q Consensus 330 ~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~~~ 404 (445)
..+++|+|+.... ..+.+..++..+.+++.|+.+... .++.++++|+|..+|++++|..++....+.+..+.++
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~ 92 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVD-ENPDIAAKYGIRSIPTLLLFKNGKEVDRSVGALPKAA 92 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECC-CCHHHHHHcCCCcCCEEEEEeCCcEeeeecCCCCHHH
Confidence 4577888876543 256788888888878888666544 5688999999999999998865554455555566666
Q ss_pred HHHHHH
Q 013319 405 QKSSIH 410 (445)
Q Consensus 405 ~~~~~~ 410 (445)
+..++.
T Consensus 93 l~~~l~ 98 (101)
T TIGR01068 93 LKQLIN 98 (101)
T ss_pred HHHHHH
Confidence 655554
No 221
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.64 E-value=0.00022 Score=66.11 Aligned_cols=81 Identities=16% Similarity=0.265 Sum_probs=63.4
Q ss_pred CcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCc-----------cchhhHhHhCCccCCCcEEEEeccCCC
Q 013319 217 GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCE-----------TEASLCKELGVHRPRSPRIFAYSYKAG 284 (445)
Q Consensus 217 ~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~-----------~~~~lc~~~~I~~~~~Pti~~f~~~~~ 284 (445)
++.-||.||.+.|++|+. +|+...+++++ .+.+..|+.| .+..++++++|..+ |++++....
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~y--g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~--Pal~Lv~~~-- 193 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKY--GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVT--PALFLVNPN-- 193 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHh--CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcC--CEEEEEECC--
Confidence 456799999999999999 99999999998 4677777776 35789999999999 999998432
Q ss_pred CCCCeee-ecCcccHHHHHHH
Q 013319 285 DKGSLVE-YNEHLVAKNLKSF 304 (445)
Q Consensus 285 ~~g~~~~-y~g~~~~~~l~~f 304 (445)
.++... -.|..+.++|.+=
T Consensus 194 -~~~~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 194 -TKKWYPVSQGFMSLDELEDR 213 (215)
T ss_pred -CCeEEEEeeecCCHHHHHHh
Confidence 123333 4577788888653
No 222
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.59 E-value=0.00019 Score=54.62 Aligned_cols=50 Identities=6% Similarity=0.096 Sum_probs=38.0
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHh-----CCccCCCcEEEE
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKEL-----GVHRPRSPRIFA 278 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~-----~I~~~~~Pti~~ 278 (445)
++.|+++||++|+. .+.++++. +.+-.||++++......+ ++..+ |+|++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~v--P~i~~ 57 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTV--PTVKF 57 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCcee--CEEEE
Confidence 67899999999999 88776553 445578888776655553 88889 99853
No 223
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.59 E-value=0.00056 Score=59.16 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=59.7
Q ss_pred ccCCCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecC-CChHHHHHcCCCCCCeEEEEccCCc-ccccccc
Q 013319 327 AKARLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHD-VSDPAVKKLGVDALPAIVGWLSNGE-KDVLKTG 399 (445)
Q Consensus 327 ~~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~-~~~~l~~~f~V~~~Ptlv~~~~~~~-~~~~~~~ 399 (445)
...+++++|.|+..+. ..+.+.+++..+.+.+.|+.+.++. ....++++|+|..+|++++|.++++ ...+.+.
T Consensus 17 ~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~ 96 (142)
T cd02950 17 LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGL 96 (142)
T ss_pred HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCC
Confidence 3566788888876543 3577888998898888887777664 2357899999999999998876554 3345555
Q ss_pred cChhhHHHHHHH
Q 013319 400 ISVKDQKSSIHE 411 (445)
Q Consensus 400 ~~~~~~~~~~~~ 411 (445)
...++++..+..
T Consensus 97 ~~~~~l~~~l~~ 108 (142)
T cd02950 97 QPKQVLAQNLDA 108 (142)
T ss_pred CCHHHHHHHHHH
Confidence 555555444443
No 224
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.58 E-value=0.00018 Score=63.66 Aligned_cols=79 Identities=20% Similarity=0.316 Sum_probs=67.2
Q ss_pred ChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEeccCC
Q 013319 205 NLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYSYKA 283 (445)
Q Consensus 205 t~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~~~ 283 (445)
++.+|-+.+..+. -+++.||-|.-..|+. ...++.+|+..- ..+|.+||+...|-||.+++|+.. |+|.+|
T Consensus 73 ~Ekdf~~~~~kS~-kVVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~~PFlv~kL~IkVL--P~v~l~---- 144 (211)
T KOG1672|consen 73 SEKDFFEEVKKSE-KVVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEKAPFLVTKLNIKVL--PTVALF---- 144 (211)
T ss_pred cHHHHHHHhhcCc-eEEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEecccCceeeeeeeeeEe--eeEEEE----
Confidence 4778877765555 4899999999999999 999999999864 589999999999999999999999 999999
Q ss_pred CCCCCeeee
Q 013319 284 GDKGSLVEY 292 (445)
Q Consensus 284 ~~~g~~~~y 292 (445)
.+|..+.|
T Consensus 145 -k~g~~~D~ 152 (211)
T KOG1672|consen 145 -KNGKTVDY 152 (211)
T ss_pred -EcCEEEEE
Confidence 45554543
No 225
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.56 E-value=0.00032 Score=63.47 Aligned_cols=41 Identities=10% Similarity=0.167 Sum_probs=34.8
Q ss_pred Cc-EEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCc
Q 013319 217 GM-TWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCE 257 (445)
Q Consensus 217 ~~-~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~ 257 (445)
++ ++||.++|.||+.|+. .|.++++.+++++ .+.|..|+|+
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 44 4456669999999999 9999999999986 6999999985
No 226
>PHA02278 thioredoxin-like protein
Probab=97.56 E-value=0.00049 Score=56.06 Aligned_cols=78 Identities=6% Similarity=0.139 Sum_probs=56.9
Q ss_pred cCCCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCC---ChHHHHHcCCCCCCeEEEEccCCcccccccc
Q 013319 328 KARLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDV---SDPAVKKLGVDALPAIVGWLSNGEKDVLKTG 399 (445)
Q Consensus 328 ~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~---~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~ 399 (445)
..+.+++|.|+..+. ..+.+.+++..+...+.|+.++++.. .++++++|+|.+.||+++|+.++....+.+.
T Consensus 12 ~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v~~~~G~ 91 (103)
T PHA02278 12 RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLVKKYEDQ 91 (103)
T ss_pred hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEEEEEeCC
Confidence 456788888876653 36788889887666667777766642 2689999999999999988877666556555
Q ss_pred cChhhH
Q 013319 400 ISVKDQ 405 (445)
Q Consensus 400 ~~~~~~ 405 (445)
.+.+++
T Consensus 92 ~~~~~l 97 (103)
T PHA02278 92 VTPMQL 97 (103)
T ss_pred CCHHHH
Confidence 555444
No 227
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.55 E-value=0.0015 Score=53.80 Aligned_cols=104 Identities=21% Similarity=0.282 Sum_probs=74.7
Q ss_pred ccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHH-hc--CccEEEEEeCcc-----chhhHhHhCCccC
Q 013319 201 IRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANS-ME--GALKVGSINCET-----EASLCKELGVHRP 271 (445)
Q Consensus 201 V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~-l~--~~v~~~~Vdc~~-----~~~lc~~~~I~~~ 271 (445)
...|++-+|++.| .+.+.+||.|-.-. +-=. ..+|.++|++ .. ..+.++.|.+.+ |.+|+++|+|..-
T Consensus 6 ~v~LD~~tFdKvi-~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke 82 (126)
T PF07912_consen 6 CVPLDELTFDKVI-PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKE 82 (126)
T ss_dssp SEEESTTHHHHHG-GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCC
T ss_pred eeeccceehhhee-ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcc
Confidence 5889999997754 56678999997543 2223 7899999944 33 378999998765 5799999999432
Q ss_pred CCcEEEEeccCCCCCCCeeee--cCcccHHHHHHHHHhhCC
Q 013319 272 RSPRIFAYSYKAGDKGSLVEY--NEHLVAKNLKSFCRDHLP 310 (445)
Q Consensus 272 ~~Pti~~f~~~~~~~g~~~~y--~g~~~~~~l~~fi~~~lp 310 (445)
..|.+++|.. ....++.| .|+.+.++|..|+..+-.
T Consensus 83 ~fPv~~LF~~---~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 83 DFPVIYLFVG---DKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp C-SEEEEEES---STTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred cCCEEEEecC---CCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 2399999962 23468888 889999999999997643
No 228
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.53 E-value=0.00056 Score=55.63 Aligned_cols=79 Identities=10% Similarity=0.003 Sum_probs=53.5
Q ss_pred cCCCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCC--hHHHHHcCCCCCCeEEEEccCCccccccccc
Q 013319 328 KARLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVS--DPAVKKLGVDALPAIVGWLSNGEKDVLKTGI 400 (445)
Q Consensus 328 ~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~--~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~ 400 (445)
..+++++|.|+..+. ..+.+..++..+ ..+.|+.++++... .+++++|+|+++||+++|+.++....+.+ .
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G-~ 90 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKIHEEEG-I 90 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEEEEEeC-C
Confidence 346788888876543 257888899988 56778666544321 47999999999999997754444444433 4
Q ss_pred ChhhHHHH
Q 013319 401 SVKDQKSS 408 (445)
Q Consensus 401 ~~~~~~~~ 408 (445)
..++++..
T Consensus 91 ~~~~l~~~ 98 (103)
T cd02985 91 GPDELIGD 98 (103)
T ss_pred CHHHHHHH
Confidence 55555443
No 229
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00055 Score=65.07 Aligned_cols=111 Identities=17% Similarity=0.204 Sum_probs=83.5
Q ss_pred CCCCcccccChhhHHHHhhcCCc--EEEEEEECC----CCccCCC-hhHHHHHHHHhcC--------ccEEEEEeCccch
Q 013319 196 SSSGNIRALNLQVFKKEIVEKGM--TWLLFFYSP----SSNRDGY-ESVIEEVANSMEG--------ALKVGSINCETEA 260 (445)
Q Consensus 196 ~~~~~V~~Lt~~~f~~~v~~~~~--~~lV~Fyap----~C~~C~~-~p~~~~~a~~l~~--------~v~~~~Vdc~~~~ 260 (445)
.++..|+.+++++|...+....+ ..+|+|.|- .|.-|+. ..+|.-+|..... .+-|+.||.++-+
T Consensus 37 ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p 116 (331)
T KOG2603|consen 37 TSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP 116 (331)
T ss_pred cCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence 45667999999999888775443 567778764 4888999 9999999887742 5889999999999
Q ss_pred hhHhHhCCccCCCcEEEEec-cCCCCCCCeee---ecCcccHHHHHHHHHhhC
Q 013319 261 SLCKELGVHRPRSPRIFAYS-YKAGDKGSLVE---YNEHLVAKNLKSFCRDHL 309 (445)
Q Consensus 261 ~lc~~~~I~~~~~Pti~~f~-~~~~~~g~~~~---y~g~~~~~~l~~fi~~~l 309 (445)
++-+.++++.. |+|++|+ ..++.. +... +.-...+|++.+|+.+..
T Consensus 117 ~~Fq~l~ln~~--P~l~~f~P~~~n~~-~s~~~d~~~~g~~Ae~iaqfv~~~t 166 (331)
T KOG2603|consen 117 QVFQQLNLNNV--PHLVLFSPAKGNKK-RSDQMDQQDLGFEAEQIAQFVADRT 166 (331)
T ss_pred HHHHHhcccCC--CeEEEeCCCccccc-cCccchhhhcchhHHHHHHHHHHhh
Confidence 99999999999 9999993 332222 2222 222235799999998653
No 230
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.51 E-value=0.00057 Score=54.82 Aligned_cols=81 Identities=7% Similarity=0.095 Sum_probs=57.7
Q ss_pred cCCCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccCh
Q 013319 328 KARLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGISV 402 (445)
Q Consensus 328 ~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~ 402 (445)
..+++++++|+.... ..+.+..++..+.+.+.+..+++. .+++++++++|.++|+++++..++....+.+..+.
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d-~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~ 89 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID-EDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMK 89 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC-CCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccH
Confidence 356678888876543 246677888888877777666544 56889999999999999988655445556666666
Q ss_pred hhHHHHH
Q 013319 403 KDQKSSI 409 (445)
Q Consensus 403 ~~~~~~~ 409 (445)
+++++++
T Consensus 90 ~~~~~~l 96 (97)
T cd02949 90 SEYREFI 96 (97)
T ss_pred HHHHHhh
Confidence 6665443
No 231
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.49 E-value=0.00063 Score=69.81 Aligned_cols=98 Identities=11% Similarity=0.058 Sum_probs=67.5
Q ss_pred eccccccchhhh-ccCCCCEEEEEecCCC-----ChHHHHHHHHHhhcc-ceEEEEeecCCChHH-HHHcCCCCCCeEEE
Q 013319 315 RISLNRIEFTFD-AKARLPSVLLLSTKKE-----TPIIWRVLSGMYHER-LNFYDTEVHDVSDPA-VKKLGVDALPAIVG 386 (445)
Q Consensus 315 ~i~~~~~~~~~~-~~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~-~~f~~~~v~~~~~~l-~~~f~V~~~Ptlv~ 386 (445)
.++..+++.... .+.+.+++|.|+.... ..+.|.++|.++++. +.|+.++++.....+ +++|+|.++|||++
T Consensus 355 ~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~ 434 (463)
T TIGR00424 355 SLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILF 434 (463)
T ss_pred ECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEE
Confidence 344444443333 4567788888876543 257899999999765 677666555433344 47899999999999
Q ss_pred EccCC-ccccccc-ccChhhHHHHHHHH
Q 013319 387 WLSNG-EKDVLKT-GISVKDQKSSIHEL 412 (445)
Q Consensus 387 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 412 (445)
|.++. ....|++ .++.++|..|+..+
T Consensus 435 Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 435 FPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred EECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 98865 4556874 68888887776643
No 232
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.49 E-value=0.00047 Score=56.98 Aligned_cols=104 Identities=20% Similarity=0.299 Sum_probs=77.5
Q ss_pred ccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHH---hcCccEEEEEeCccchhhHhHhCCccCCCcEE
Q 013319 201 IRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANS---MEGALKVGSINCETEASLCKELGVHRPRSPRI 276 (445)
Q Consensus 201 V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~---l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti 276 (445)
|.++|.+++. .+.+++-+..+.|+++. .-.. .+.++++|++ +++.+.|+.+|.++.....+.+|++.-..|.|
T Consensus 1 ~~e~t~e~~~-~~~~~~~~~~~l~f~~~--~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i 77 (111)
T cd03072 1 VREITFENAE-ELTEEGLPFLILFHDKD--DLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVI 77 (111)
T ss_pred CcccccccHH-HHhcCCCCeEEEEecch--HHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEE
Confidence 4677888885 46677766767777221 2244 8899999999 99999999999999888999999987233999
Q ss_pred EEeccCCCCCCCeee-ecCcccHHHHHHHHHhhCC
Q 013319 277 FAYSYKAGDKGSLVE-YNEHLVAKNLKSFCRDHLP 310 (445)
Q Consensus 277 ~~f~~~~~~~g~~~~-y~g~~~~~~l~~fi~~~lp 310 (445)
.+.... ++.... +.+..+.++|.+|+.+.+.
T Consensus 78 ~i~~~~---~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 78 AIDSFR---HMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEcch---hcCcCCCCccccCHHHHHHHHHHHhc
Confidence 997321 112333 5578889999999988654
No 233
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.47 E-value=0.00012 Score=56.79 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=40.7
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccch-----hhHhHhCCccCCCcEEEE
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEA-----SLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~-----~lc~~~~I~~~~~Pti~~ 278 (445)
++.|+++||++|+. .+.++++. ..+.+.+..||-+.+. .+.+..++..+ |++++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~v--P~v~i 60 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTV--PNIFI 60 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCC--CeEEE
Confidence 57899999999999 98888876 3334667777765443 25566788899 99865
No 234
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.47 E-value=0.0003 Score=60.78 Aligned_cols=72 Identities=13% Similarity=0.231 Sum_probs=57.5
Q ss_pred CcEEEEEEECCCCccCCC-hhHHHHHHHHhcCc---cEEEEEeCccc-------------------------hhhHhHhC
Q 013319 217 GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGA---LKVGSINCETE-------------------------ASLCKELG 267 (445)
Q Consensus 217 ~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~---v~~~~Vdc~~~-------------------------~~lc~~~~ 267 (445)
++++.++|-|.||++|+. .|+..++-++++.. +.+.-|+-+.+ .+++++|+
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~ 112 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYE 112 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcc
Confidence 478999999999999999 99999998888764 77777776654 47888999
Q ss_pred CccCCCcEEEEeccCCCCCCCeeeecC
Q 013319 268 VHRPRSPRIFAYSYKAGDKGSLVEYNE 294 (445)
Q Consensus 268 I~~~~~Pti~~f~~~~~~~g~~~~y~g 294 (445)
|.+. |++++. ..+|..+.-.+
T Consensus 113 v~~i--P~l~i~----~~dG~~v~~d~ 133 (157)
T KOG2501|consen 113 VKGI--PALVIL----KPDGTVVTEDA 133 (157)
T ss_pred cCcC--ceeEEe----cCCCCEehHhh
Confidence 9999 999987 34565555443
No 235
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.46 E-value=0.00051 Score=60.01 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=51.7
Q ss_pred cCCCCEEEEEecCCC-----ChHHHHHHHHHhhc-cceEEEEeecCCChHHHHHcCCCC------CCeEEEEccCCcccc
Q 013319 328 KARLPSVLLLSTKKE-----TPIIWRVLSGMYHE-RLNFYDTEVHDVSDPAVKKLGVDA------LPAIVGWLSNGEKDV 395 (445)
Q Consensus 328 ~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~-~~~f~~~~v~~~~~~l~~~f~V~~------~Ptlv~~~~~~~~~~ 395 (445)
....+++|.|+..+. ..+.+..+|..+.+ .+.|+.+++. .+++++++|+|+. +||+++|..++....
T Consensus 45 ~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd-~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r 123 (152)
T cd02962 45 DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIG-RFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVAR 123 (152)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECC-CCHHHHHHcCceecCCcCCCCEEEEEECCEEEEE
Confidence 345678888877643 36789999999874 4788766654 6789999999988 999998886665544
Q ss_pred cc
Q 013319 396 LK 397 (445)
Q Consensus 396 ~~ 397 (445)
+.
T Consensus 124 ~~ 125 (152)
T cd02962 124 RP 125 (152)
T ss_pred Ee
Confidence 43
No 236
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.40 E-value=0.00031 Score=58.73 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=38.6
Q ss_pred CCcEEEEEEECC-CCccCCC-hhHHHHHHHHhcC-ccEEEEEeCccc
Q 013319 216 KGMTWLLFFYSP-SSNRDGY-ESVIEEVANSMEG-ALKVGSINCETE 259 (445)
Q Consensus 216 ~~~~~lV~Fyap-~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~~ 259 (445)
.+++.+|.||+. ||++|+. .+.+.++..+++. .+.+..|+.+..
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~ 70 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP 70 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc
Confidence 447899999999 9999999 9999999999986 689998888654
No 237
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.40 E-value=0.00072 Score=63.99 Aligned_cols=85 Identities=21% Similarity=0.255 Sum_probs=65.7
Q ss_pred cEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccc-----------hhhHhHhCCccCCCcEEEEeccCCCC
Q 013319 218 MTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETE-----------ASLCKELGVHRPRSPRIFAYSYKAGD 285 (445)
Q Consensus 218 ~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~-----------~~lc~~~~I~~~~~Pti~~f~~~~~~ 285 (445)
+.-||.||...|++|+. +|+.+.++++++ +.+..|++|.. ..++++++|..+ |++++...+
T Consensus 151 ~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~--Pal~Lv~~~--- 223 (256)
T TIGR02739 151 SYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYF--PALYLVNPK--- 223 (256)
T ss_pred ceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccC--ceEEEEECC---
Confidence 36799999999999999 999999999984 77777777654 458899999999 999998432
Q ss_pred CCCeee-ecCcccHHHHHHHHHhhC
Q 013319 286 KGSLVE-YNEHLVAKNLKSFCRDHL 309 (445)
Q Consensus 286 ~g~~~~-y~g~~~~~~l~~fi~~~l 309 (445)
.++..+ -.|..+.++|.+=+...+
T Consensus 224 t~~~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 224 SQKMSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred CCcEEEEeeccCCHHHHHHHHHHHH
Confidence 133333 347888888887665443
No 238
>PLN02309 5'-adenylylsulfate reductase
Probab=97.35 E-value=0.00096 Score=68.45 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=68.3
Q ss_pred ccccccchhhh-ccCCCCEEEEEecCCC-----ChHHHHHHHHHhhcc-ceEEEEeecCCChHHHH-HcCCCCCCeEEEE
Q 013319 316 ISLNRIEFTFD-AKARLPSVLLLSTKKE-----TPIIWRVLSGMYHER-LNFYDTEVHDVSDPAVK-KLGVDALPAIVGW 387 (445)
Q Consensus 316 i~~~~~~~~~~-~~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~-~~f~~~~v~~~~~~l~~-~f~V~~~Ptlv~~ 387 (445)
++.++++.... .+.+++++|.|+.... ..+.|..+|..|.+. +.|+.+++...+..+++ +|+|+++|||++|
T Consensus 350 Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f 429 (457)
T PLN02309 350 LSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILLF 429 (457)
T ss_pred CCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEEE
Confidence 34444443332 4567788998886653 357899999998754 77766655434567886 6999999999999
Q ss_pred ccCC-ccccccc-ccChhhHHHHHHHH
Q 013319 388 LSNG-EKDVLKT-GISVKDQKSSIHEL 412 (445)
Q Consensus 388 ~~~~-~~~~~~~-~~~~~~~~~~~~~~ 412 (445)
.++. ....|++ .++.++|+.|+..+
T Consensus 430 ~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 430 PKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 8754 4557875 57888888887654
No 239
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0012 Score=53.90 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=54.4
Q ss_pred cCCCCEEEEEecCC-----CChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCccccc
Q 013319 328 KARLPSVLLLSTKK-----ETPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVL 396 (445)
Q Consensus 328 ~~~~~~vvlF~~~~-----~~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~ 396 (445)
..++++|+.|+..+ ...|.+.+||.+|.+ +.|..++++. +.+++++++|...||+++++.+.....+
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde-~~~~~~~~~V~~~PTf~f~k~g~~~~~~ 90 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE-LEEVAKEFNVKAMPTFVFYKGGEEVDEV 90 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc-CHhHHHhcCceEeeEEEEEECCEEEEEE
Confidence 44578889887654 347999999999998 9998888776 8999999999999999977665554444
No 240
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.31 E-value=0.0015 Score=59.28 Aligned_cols=84 Identities=17% Similarity=0.174 Sum_probs=58.8
Q ss_pred CcEEEEEEE-CCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCcc-------------------------chhhHhHhCC
Q 013319 217 GMTWLLFFY-SPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCET-------------------------EASLCKELGV 268 (445)
Q Consensus 217 ~~~~lV~Fy-ap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~-------------------------~~~lc~~~~I 268 (445)
++++||.|| +.||+.|.. .|.+.++.+++.. .+.+..|+++. ...+++.|+|
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv 110 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV 110 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence 457899999 999999999 9999999999874 67777777653 1256777887
Q ss_pred c------cCCCcEEEEeccCCCCCCCeee-ec--C--cccHHHHHHHHH
Q 013319 269 H------RPRSPRIFAYSYKAGDKGSLVE-YN--E--HLVAKNLKSFCR 306 (445)
Q Consensus 269 ~------~~~~Pti~~f~~~~~~~g~~~~-y~--g--~~~~~~l~~fi~ 306 (445)
. .. |+.+++. .+|.+.. +. . .+..++|.+.|.
T Consensus 111 ~~~~~g~~~--p~tfiID----~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 111 LIEEAGLAD--RGTFVID----PEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred cccCCCcee--eEEEEEC----CCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 5 34 8777772 3454332 21 1 236677776664
No 241
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00031 Score=59.83 Aligned_cols=66 Identities=29% Similarity=0.524 Sum_probs=54.8
Q ss_pred CCcCcccccCCCC--CCCHHHHHHHHHHHHHhhCCCCCCC------hHHHHHHHHHHHHHHHcCCHHHHHHhhh
Q 013319 28 KTVDLYKVLGVER--NASQREIQKAFHKLSLQYHPDKNKN------KAAQEKFAEINNAYDILSDEEKRKNYDL 93 (445)
Q Consensus 28 ~~~d~y~vLgv~~--~a~~~~ik~ayr~l~~~~hPd~~~~------~~~~~~f~~i~~Ay~~L~d~~~r~~yd~ 93 (445)
...+||.++|... ..+++.+..-|.-..++.|||+... ..+.+...++++||.+|+||-+|..|=.
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4578999997654 4677778879999999999998542 3577889999999999999999999963
No 242
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.29 E-value=0.0018 Score=57.66 Aligned_cols=52 Identities=13% Similarity=0.196 Sum_probs=40.7
Q ss_pred CcEEEEEEECCC-CccCCC-hhHHHHHHHHhcCccEEEEEeCccc---hhhHhHhCCc
Q 013319 217 GMTWLLFFYSPS-SNRDGY-ESVIEEVANSMEGALKVGSINCETE---ASLCKELGVH 269 (445)
Q Consensus 217 ~~~~lV~Fyap~-C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~---~~lc~~~~I~ 269 (445)
+++++|.||+.| |+.|.. .|.+.++++++. .+.+..|+++.. .+.++++++.
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~ 100 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLE 100 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCC
Confidence 457999999999 999999 999999999984 688888888753 2334444443
No 243
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.28 E-value=0.0016 Score=69.33 Aligned_cols=92 Identities=13% Similarity=0.091 Sum_probs=71.9
Q ss_pred cccChhhHHHHhhcCCcEE-EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEe
Q 013319 202 RALNLQVFKKEIVEKGMTW-LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAY 279 (445)
Q Consensus 202 ~~Lt~~~f~~~v~~~~~~~-lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f 279 (445)
..|+++.. +.|..-+.+. +-.|++++|++|.. ...+.++|.+.. .|..-.||+.+.++++++|+|.++ |++++
T Consensus 461 ~~l~~~~~-~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~~~~~~~v~~v--P~~~i- 535 (555)
T TIGR03143 461 QPLGEELL-EKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSV--PAIVV- 535 (555)
T ss_pred CCCCHHHH-HHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHHHHHhCCceec--CEEEE-
Confidence 45555544 3355544444 55568999999999 889999988854 688999999999999999999999 99998
Q ss_pred ccCCCCCCCeeeecCcccHHHHHHHH
Q 013319 280 SYKAGDKGSLVEYNEHLVAKNLKSFC 305 (445)
Q Consensus 280 ~~~~~~~g~~~~y~g~~~~~~l~~fi 305 (445)
+++ +.+.|..+.++|.+|+
T Consensus 536 ------~~~-~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 536 ------DDQ-QVYFGKKTIEEMLELI 554 (555)
T ss_pred ------CCE-EEEeeCCCHHHHHHhh
Confidence 343 4577888889998876
No 244
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.27 E-value=0.0028 Score=51.41 Aligned_cols=81 Identities=7% Similarity=0.005 Sum_probs=55.3
Q ss_pred CCCCEEEEEecCCC-----ChHHHHHHHHHhhcc---ceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCccccccccc
Q 013319 329 ARLPSVLLLSTKKE-----TPIIWRVLSGMYHER---LNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGI 400 (445)
Q Consensus 329 ~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~---~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~ 400 (445)
...+++|.|+.... ..+.+..++..+++. +.++.+++. ....++++|+|.++||+++|.. +....+.+..
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~I~~~Pt~~l~~~-~~~~~~~G~~ 91 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT-AYSSIASEFGVRGYPTIKLLKG-DLAYNYRGPR 91 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc-cCHhHHhhcCCccccEEEEEcC-CCceeecCCC
Confidence 35577888876543 256788999988542 445333322 5688999999999999998854 4445577777
Q ss_pred ChhhHHHHHHH
Q 013319 401 SVKDQKSSIHE 411 (445)
Q Consensus 401 ~~~~~~~~~~~ 411 (445)
+.+++..++..
T Consensus 92 ~~~~l~~~~~~ 102 (104)
T cd03000 92 TKDDIVEFANR 102 (104)
T ss_pred CHHHHHHHHHh
Confidence 77777666543
No 245
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.26 E-value=0.0018 Score=52.54 Aligned_cols=80 Identities=10% Similarity=0.104 Sum_probs=54.7
Q ss_pred cCCCCEEEEEecCCC-----ChHHHHHHHHHhhcc-ceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccC
Q 013319 328 KARLPSVLLLSTKKE-----TPIIWRVLSGMYHER-LNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGIS 401 (445)
Q Consensus 328 ~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~-~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~ 401 (445)
..+.+++|.|+.... ..+.+..++..+.+. +.|+.++++ +.+++++|+|+.+||+++|..++......+ .+
T Consensus 15 ~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G-~~ 91 (102)
T cd02948 15 SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--TIDTLKRYRGKCEPTFLFYKNGELVAVIRG-AN 91 (102)
T ss_pred ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--CHHHHHHcCCCcCcEEEEEECCEEEEEEec-CC
Confidence 356688888876553 256788888888753 567555443 678999999999999998875544444433 45
Q ss_pred hhhHHHHHH
Q 013319 402 VKDQKSSIH 410 (445)
Q Consensus 402 ~~~~~~~~~ 410 (445)
.+.+.+++.
T Consensus 92 ~~~~~~~i~ 100 (102)
T cd02948 92 APLLNKTIT 100 (102)
T ss_pred hHHHHHHHh
Confidence 556655544
No 246
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.26 E-value=0.0021 Score=57.48 Aligned_cols=42 Identities=14% Similarity=0.127 Sum_probs=35.7
Q ss_pred CcEEEEEEE-CCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCcc
Q 013319 217 GMTWLLFFY-SPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCET 258 (445)
Q Consensus 217 ~~~~lV~Fy-ap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~ 258 (445)
++++||.|| +.||+.|.. .+.+.++++++.. .+.+..|+++.
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS 73 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 467899999 899999999 9999999999975 57777787654
No 247
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.24 E-value=0.0018 Score=51.60 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=51.1
Q ss_pred CCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccChhh
Q 013319 330 RLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGISVKD 404 (445)
Q Consensus 330 ~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~~~ 404 (445)
+++++|.|+.... ..+.+..++..+...+.|+.++.. ...+++++|+|+.+||+++|..++....+ .|...++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~-~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~-~g~~~~~ 91 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE-ELPEISEKFEITAVPTFVFFRNGTIVDRV-SGADPKE 91 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc-cCHHHHHhcCCccccEEEEEECCEEEEEE-eCCCHHH
Confidence 5678888876543 256788888887666777555433 56789999999999999988644333222 3445555
Q ss_pred HHH
Q 013319 405 QKS 407 (445)
Q Consensus 405 ~~~ 407 (445)
|.+
T Consensus 92 l~~ 94 (97)
T cd02984 92 LAK 94 (97)
T ss_pred HHH
Confidence 543
No 248
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.21 E-value=0.0017 Score=51.36 Aligned_cols=95 Identities=26% Similarity=0.499 Sum_probs=69.2
Q ss_pred ChhhHHHHhhcCCcEEEEEEECCCCccCCChhHHHHHHHHhcCccEEEEEeCcc--chhhHhHhCCc----cCCCcE-EE
Q 013319 205 NLQVFKKEIVEKGMTWLLFFYSPSSNRDGYESVIEEVANSMEGALKVGSINCET--EASLCKELGVH----RPRSPR-IF 277 (445)
Q Consensus 205 t~~~f~~~v~~~~~~~lV~Fyap~C~~C~~~p~~~~~a~~l~~~v~~~~Vdc~~--~~~lc~~~~I~----~~~~Pt-i~ 277 (445)
+-++|++++...++ +||.|..+--..-.....+.++|..++|.-.++-|||.. .+.||+++.|. .- |. |.
T Consensus 8 d~KdfKKLLRTr~N-VLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~--~~~Lk 84 (112)
T cd03067 8 DHKDFKKLLRTRNN-VLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPK--PVELK 84 (112)
T ss_pred chHHHHHHHhhcCc-EEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCC--cchhh
Confidence 35779877655554 777776654333333779999999999999999999997 67999999998 33 43 33
Q ss_pred EeccCCCCCCC-eeeecCcccHHHHHHHHHh
Q 013319 278 AYSYKAGDKGS-LVEYNEHLVAKNLKSFCRD 307 (445)
Q Consensus 278 ~f~~~~~~~g~-~~~y~g~~~~~~l~~fi~~ 307 (445)
-| .+|. ...|.-..+..+|+.|+++
T Consensus 85 HY-----KdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 85 HY-----KDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred cc-----cCCCccccccchhhHHHHHHHhhC
Confidence 44 3342 3458888888999999864
No 249
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.19 E-value=0.0035 Score=51.92 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=54.3
Q ss_pred CCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCccc--ccccccCh
Q 013319 330 RLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKD--VLKTGISV 402 (445)
Q Consensus 330 ~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~--~~~~~~~~ 402 (445)
....+++|+..+. ..+.+..++..+ +.+.|..+++. .+++++++|+|...||++++..++... .|.+-...
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d-~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~ 99 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFD-EDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAG 99 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCC-cCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCch
Confidence 3345666654332 257788888776 56778666655 678999999999999999888654322 35454444
Q ss_pred hhHHHHHHHHH
Q 013319 403 KDQKSSIHELS 413 (445)
Q Consensus 403 ~~~~~~~~~~~ 413 (445)
.++.+++..+.
T Consensus 100 ~el~~~i~~i~ 110 (113)
T cd02975 100 YEFASLIEDIV 110 (113)
T ss_pred HHHHHHHHHHH
Confidence 66666655543
No 250
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.15 E-value=0.0024 Score=51.82 Aligned_cols=82 Identities=7% Similarity=0.038 Sum_probs=54.3
Q ss_pred cCCCCEEEEEecCCCC-----hHHH---HHHHHHhhccceEEEEeecCC---ChHHHHHcCCCCCCeEEEEcc-CCc-cc
Q 013319 328 KARLPSVLLLSTKKET-----PIIW---RVLSGMYHERLNFYDTEVHDV---SDPAVKKLGVDALPAIVGWLS-NGE-KD 394 (445)
Q Consensus 328 ~~~~~~vvlF~~~~~~-----~~~~---~~lA~~~~~~~~f~~~~v~~~---~~~l~~~f~V~~~Ptlv~~~~-~~~-~~ 394 (445)
..+++++|.|+..+.. .+.+ ..++..+.+++.++.+++... ..+++++|+|.++||+++|.+ +++ ..
T Consensus 9 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~~~ 88 (104)
T cd02953 9 AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPEPL 88 (104)
T ss_pred HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCCCc
Confidence 4567888888765432 1222 356677776677766655432 468999999999999999986 444 44
Q ss_pred ccccccChhhHHHHH
Q 013319 395 VLKTGISVKDQKSSI 409 (445)
Q Consensus 395 ~~~~~~~~~~~~~~~ 409 (445)
.+.+..+.+++.+++
T Consensus 89 ~~~G~~~~~~l~~~l 103 (104)
T cd02953 89 RLPGFLTADEFLEAL 103 (104)
T ss_pred ccccccCHHHHHHHh
Confidence 566667776665443
No 251
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.14 E-value=0.0018 Score=53.48 Aligned_cols=100 Identities=15% Similarity=0.184 Sum_probs=69.5
Q ss_pred cccChhhHHHHhhcCCcEEEEEEEC----CCCccCCC-hhHHHHHHHHhc-CccEEEEEeCccchhhHhHhCCccCC--C
Q 013319 202 RALNLQVFKKEIVEKGMTWLLFFYS----PSSNRDGY-ESVIEEVANSME-GALKVGSINCETEASLCKELGVHRPR--S 273 (445)
Q Consensus 202 ~~Lt~~~f~~~v~~~~~~~lV~Fya----p~C~~C~~-~p~~~~~a~~l~-~~v~~~~Vdc~~~~~lc~~~~I~~~~--~ 273 (445)
.++|.+|.... . ..+.+|.||+ ..-..-.. ...+.++|++++ +.+.|+.+|.++.....+.+|+..-. .
T Consensus 2 ~~~~~en~~~~-~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~ 78 (111)
T cd03073 2 GHRTKDNRAQF-T--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEK 78 (111)
T ss_pred CeeccchHHHh-c--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCC
Confidence 35566676543 2 2234555542 22222344 888999999999 69999999999988889999998522 3
Q ss_pred cEEEEeccCCCCCCCeeeecCcc-cHHHHHHHHHhh
Q 013319 274 PRIFAYSYKAGDKGSLVEYNEHL-VAKNLKSFCRDH 308 (445)
Q Consensus 274 Pti~~f~~~~~~~g~~~~y~g~~-~~~~l~~fi~~~ 308 (445)
|++.+... ++......+.. +.++|.+|+.+.
T Consensus 79 P~~~i~~~----~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 79 PVVAIRTA----KGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CEEEEEeC----CCCccCCCcccCCHHHHHHHHHHh
Confidence 99999832 22223346677 889999999864
No 252
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.14 E-value=0.0032 Score=50.27 Aligned_cols=74 Identities=15% Similarity=0.107 Sum_probs=54.9
Q ss_pred CEEEEEecCC-CChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccC-CcccccccccChhhHHHHH
Q 013319 332 PSVLLLSTKK-ETPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSN-GEKDVLKTGISVKDQKSSI 409 (445)
Q Consensus 332 ~~vvlF~~~~-~~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~-~~~~~~~~~~~~~~~~~~~ 409 (445)
.+|.+|.+.. .....|..+|..+++.+.|+.+ .+.+++++++++. |++++|++. .....|.+..+.++|..|+
T Consensus 20 ~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~----~~~~~~~~~~~~~-~~i~l~~~~~~~~~~y~g~~~~~~l~~fi 94 (97)
T cd02981 20 VVVGFFKDEESEEYKTFEKVAESLRDDYGFGHT----SDKEVAKKLKVKP-GSVVLFKPFEEEPVEYDGEFTEESLVEFI 94 (97)
T ss_pred EEEEEECCCCcHHHHHHHHHHHhcccCCeEEEE----ChHHHHHHcCCCC-CceEEeCCcccCCccCCCCCCHHHHHHHH
Confidence 3444554433 3478999999999998999776 4688999998875 999999884 5556688877777776665
Q ss_pred H
Q 013319 410 H 410 (445)
Q Consensus 410 ~ 410 (445)
.
T Consensus 95 ~ 95 (97)
T cd02981 95 K 95 (97)
T ss_pred H
Confidence 4
No 253
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.14 E-value=0.0035 Score=53.87 Aligned_cols=65 Identities=6% Similarity=-0.005 Sum_probs=50.6
Q ss_pred ccCCCCEEEEEecCCCC-----hHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCc
Q 013319 327 AKARLPSVLLLSTKKET-----PIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGE 392 (445)
Q Consensus 327 ~~~~~~~vvlF~~~~~~-----~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~ 392 (445)
...++++||.|+..+.. .+.+.++|.++.+.+.|+.++++ .+++++++|+|...|++++|.+++.
T Consensus 20 ~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVD-e~~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 20 AEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDIT-EVPDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred hcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECC-CCHHHHHHcCccCCCcEEEEEECCe
Confidence 34567888888876543 57899999999988888777766 6789999999998777775555543
No 254
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.11 E-value=0.0016 Score=54.25 Aligned_cols=71 Identities=15% Similarity=0.241 Sum_probs=46.8
Q ss_pred hhHHHHhhc---CCcEEEEEEEC-------CCCccCCC-hhHHHHHHHHhcCccEEEEEeCccch-------hhHh--Hh
Q 013319 207 QVFKKEIVE---KGMTWLLFFYS-------PSSNRDGY-ESVIEEVANSMEGALKVGSINCETEA-------SLCK--EL 266 (445)
Q Consensus 207 ~~f~~~v~~---~~~~~lV~Fya-------p~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~-------~lc~--~~ 266 (445)
++|.+.+.. ++.+.+|.|++ +||+.|.. .|..+++-........+..|.+...+ ..-. ++
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~ 85 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDL 85 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEccee
Confidence 345555543 45689999995 49999999 99999988886667777777764321 2222 48
Q ss_pred CCccCCCcEEEEe
Q 013319 267 GVHRPRSPRIFAY 279 (445)
Q Consensus 267 ~I~~~~~Pti~~f 279 (445)
+|+++ |||+-+
T Consensus 86 ~l~~I--PTLi~~ 96 (119)
T PF06110_consen 86 KLKGI--PTLIRW 96 (119)
T ss_dssp ---SS--SEEEEC
T ss_pred eeeec--ceEEEE
Confidence 99999 999998
No 255
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.10 E-value=0.0025 Score=52.86 Aligned_cols=63 Identities=10% Similarity=0.121 Sum_probs=46.0
Q ss_pred CCCCEEEEEecCCC-----ChHHHHHHHHHhhc---cceEEEEeecC-CChHHHHHcCCCCCCeEEEEccCC
Q 013319 329 ARLPSVLLLSTKKE-----TPIIWRVLSGMYHE---RLNFYDTEVHD-VSDPAVKKLGVDALPAIVGWLSNG 391 (445)
Q Consensus 329 ~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~---~~~f~~~~v~~-~~~~l~~~f~V~~~Ptlv~~~~~~ 391 (445)
..++++|.|+..+. ..+.|..+|..+++ .+.|+.++... .+.+++++|+|..+||+++|.++.
T Consensus 18 ~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~~ 89 (114)
T cd02992 18 SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPPFS 89 (114)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECCCC
Confidence 34688888876543 35789999998864 35665444322 467899999999999999887765
No 256
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.10 E-value=0.0022 Score=53.44 Aligned_cols=94 Identities=6% Similarity=-0.011 Sum_probs=66.6
Q ss_pred HHhhcCCcEEEEEEECC----CCccCCC---hhHHHHHHHHhcCccEEEEEeCccc--hhhHhHhCCccCCCcEEEEecc
Q 013319 211 KEIVEKGMTWLLFFYSP----SSNRDGY---ESVIEEVANSMEGALKVGSINCETE--ASLCKELGVHRPRSPRIFAYSY 281 (445)
Q Consensus 211 ~~v~~~~~~~lV~Fyap----~C~~C~~---~p~~~~~a~~l~~~v~~~~Vdc~~~--~~lc~~~~I~~~~~Pti~~f~~ 281 (445)
+..++..+..+|.+|+| ||..|+. .|. +.+-++..+-+...|++.. .+++..+++..| |++.++..
T Consensus 11 ~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~---v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~--P~~~~l~~ 85 (116)
T cd02991 11 NDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPE---VIEYINTRMLFWACSVAKPEGYRVSQALRERTY--PFLAMIML 85 (116)
T ss_pred HHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHH---HHHHHHcCEEEEEEecCChHHHHHHHHhCCCCC--CEEEEEEe
Confidence 33456778999999999 7777866 444 4444455567777777654 578999999999 99998832
Q ss_pred CCCCCC-CeeeecCcccHHHHHHHHHhhCC
Q 013319 282 KAGDKG-SLVEYNEHLVAKNLKSFCRDHLP 310 (445)
Q Consensus 282 ~~~~~g-~~~~y~g~~~~~~l~~fi~~~lp 310 (445)
... +. ......|..++++|...+...+.
T Consensus 86 ~~~-~~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 86 KDN-RMTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred cCC-ceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 211 22 23458899999999988876543
No 257
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0031 Score=57.44 Aligned_cols=62 Identities=15% Similarity=0.241 Sum_probs=56.8
Q ss_pred cCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEe
Q 013319 215 EKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAY 279 (445)
Q Consensus 215 ~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f 279 (445)
+.....++.|+++||..|+. ..+++.+++.. ..+.+.+++.++.+.+|..+.|... |.+..+
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~v--p~~~~~ 77 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAV--PYFVFF 77 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcC--ceeeee
Confidence 36667899999999999999 88999999888 6799999999999999999999999 998887
No 258
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.08 E-value=0.0021 Score=60.86 Aligned_cols=94 Identities=10% Similarity=0.051 Sum_probs=70.1
Q ss_pred CCCEEEEEecCCC-----ChHHHHHHHHHhhccc---eEEEEeecC-CChHHHHHcCCCCCCeEEEEccCCccc-ccccc
Q 013319 330 RLPSVLLLSTKKE-----TPIIWRVLSGMYHERL---NFYDTEVHD-VSDPAVKKLGVDALPAIVGWLSNGEKD-VLKTG 399 (445)
Q Consensus 330 ~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~---~f~~~~v~~-~~~~l~~~f~V~~~Ptlv~~~~~~~~~-~~~~~ 399 (445)
...++|-|+..+. ..++|..+|..++.+. +++.+.|++ .+..++.+|.|++|||+-+|+++.-.. -|.+.
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg~ 92 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYRGQ 92 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhhccc
Confidence 4456677766553 3688999998887554 355577777 678899999999999999888865433 79999
Q ss_pred cChhhHHHHHHHH-Hhhhhhhhhcc
Q 013319 400 ISVKDQKSSIHEL-SKLLDGLKKRT 423 (445)
Q Consensus 400 ~~~~~~~~~~~~~-~~~l~~~~~~n 423 (445)
++++.+..+++.. ...|++|...+
T Consensus 93 RsVeaL~efi~kq~s~~i~Ef~sl~ 117 (375)
T KOG0912|consen 93 RSVEALIEFIEKQLSDPINEFESLD 117 (375)
T ss_pred hhHHHHHHHHHHHhccHHHHHHhHH
Confidence 9999888887654 46677776554
No 259
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.05 E-value=0.0042 Score=48.07 Aligned_cols=76 Identities=13% Similarity=0.150 Sum_probs=52.9
Q ss_pred CCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccChhhH
Q 013319 331 LPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGISVKDQ 405 (445)
Q Consensus 331 ~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~~~~ 405 (445)
.+.+|+|+.... ..+.+.+++.. .+.+.|+.+++. .+..++++|+|..+|+++++..++....+.+..+.+++
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~-~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l 88 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVD-ENPELAEEYGVRSIPTFLFFKNGKEVDRVVGADPKEEL 88 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECC-CChhHHHhcCcccccEEEEEECCEEEEEEecCCCHHHH
Confidence 677888876532 24567777766 556777655544 46889999999999999988776656666666555555
Q ss_pred HHH
Q 013319 406 KSS 408 (445)
Q Consensus 406 ~~~ 408 (445)
..+
T Consensus 89 ~~~ 91 (93)
T cd02947 89 EEF 91 (93)
T ss_pred HHH
Confidence 443
No 260
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.05 E-value=0.0019 Score=58.24 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=56.9
Q ss_pred CCcEEEEEEECCCCccCCChhHHHHHHHHhcC-ccEEEEEeCcc--------c---hhhHh-HhCCccCCCcEEEEeccC
Q 013319 216 KGMTWLLFFYSPSSNRDGYESVIEEVANSMEG-ALKVGSINCET--------E---ASLCK-ELGVHRPRSPRIFAYSYK 282 (445)
Q Consensus 216 ~~~~~lV~Fyap~C~~C~~~p~~~~~a~~l~~-~v~~~~Vdc~~--------~---~~lc~-~~~I~~~~~Pti~~f~~~ 282 (445)
.++++||.|+|.||+.|+..|.++++.+++++ .+.|..|.|++ . .+.|+ ++++. + |.+-=
T Consensus 24 ~GKvvLVvf~AS~C~~~~q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-F--pv~~k---- 96 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-F--PMFSK---- 96 (183)
T ss_pred CCCEEEEEEEeCCCCCcHHHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-c--eeEEE----
Confidence 35789999999999999668899999999986 79999999953 1 34565 56653 4 53321
Q ss_pred CCCCCCeeeecCcccHHHHHHHHHhhCC
Q 013319 283 AGDKGSLVEYNEHLVAKNLKSFCRDHLP 310 (445)
Q Consensus 283 ~~~~g~~~~y~g~~~~~~l~~fi~~~lp 310 (445)
+.-+|. .+..|-+|+....|
T Consensus 97 -------~dvnG~-~~~pl~~~Lk~~~~ 116 (183)
T PRK10606 97 -------IEVNGE-GRHPLYQKLIAAAP 116 (183)
T ss_pred -------EccCCC-CCCHHHHHHHHhCC
Confidence 223343 44568888887666
No 261
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.04 E-value=0.0035 Score=51.94 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=47.8
Q ss_pred CCCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCccc
Q 013319 329 ARLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKD 394 (445)
Q Consensus 329 ~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~ 394 (445)
.+.+++|.|+.... ..+.+..++..+.+ +.|+.+++. .+++++++|+|..+||+++|+.++...
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~-~~~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAE-KAPFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcc-cCHHHHHHCCCccCCEEEEEECCEEEE
Confidence 34577888875543 26788899988864 788666544 568899999999999999888765443
No 262
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.04 E-value=0.0042 Score=65.59 Aligned_cols=96 Identities=10% Similarity=0.030 Sum_probs=75.2
Q ss_pred cccChhhHHHHhhcCC-cEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEe
Q 013319 202 RALNLQVFKKEIVEKG-MTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAY 279 (445)
Q Consensus 202 ~~Lt~~~f~~~v~~~~-~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f 279 (445)
..|+++.- +.+..-+ ..-+..|+++.|++|.. ...+.++|.. .+.|..-.||..++++++++|+|.++ |++++
T Consensus 101 ~~l~~~~~-~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-~~~i~~~~id~~~~~~~~~~~~v~~V--P~~~i- 175 (517)
T PRK15317 101 PKLDQEVI-EQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVL-NPNITHTMIDGALFQDEVEARNIMAV--PTVFL- 175 (517)
T ss_pred CCCCHHHH-HHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh-CCCceEEEEEchhCHhHHHhcCCccc--CEEEE-
Confidence 45555554 3344433 45688999999999999 8888888885 45789999999999999999999999 99976
Q ss_pred ccCCCCCCCeeeecCcccHHHHHHHHHhhC
Q 013319 280 SYKAGDKGSLVEYNEHLVAKNLKSFCRDHL 309 (445)
Q Consensus 280 ~~~~~~~g~~~~y~g~~~~~~l~~fi~~~l 309 (445)
++. ..+.|..+.++|.+.+.+..
T Consensus 176 ------~~~-~~~~g~~~~~~~~~~~~~~~ 198 (517)
T PRK15317 176 ------NGE-EFGQGRMTLEEILAKLDTGA 198 (517)
T ss_pred ------CCc-EEEecCCCHHHHHHHHhccc
Confidence 232 45778888888888887543
No 263
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.01 E-value=0.0054 Score=52.16 Aligned_cols=80 Identities=13% Similarity=0.124 Sum_probs=56.5
Q ss_pred CCCEEEEEecCC---------CChHHHHHHHHHhhcc-ceEEEEeecCCChHHHHHcCCCC--CCeEEEEccCC-ccccc
Q 013319 330 RLPSVLLLSTKK---------ETPIIWRVLSGMYHER-LNFYDTEVHDVSDPAVKKLGVDA--LPAIVGWLSNG-EKDVL 396 (445)
Q Consensus 330 ~~~~vvlF~~~~---------~~~~~~~~lA~~~~~~-~~f~~~~v~~~~~~l~~~f~V~~--~Ptlv~~~~~~-~~~~~ 396 (445)
...++|.|-+.. .....++.+|..|+++ +.|++++... ...+.+.|||+. +|+++++..++ +...+
T Consensus 20 ~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~-~~~~~~~fgl~~~~~P~v~i~~~~~~KY~~~ 98 (130)
T cd02983 20 KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA-QLDLEEALNIGGFGYPAMVAINFRKMKFATL 98 (130)
T ss_pred CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc-cHHHHHHcCCCccCCCEEEEEecccCccccc
Confidence 456777775431 2367899999999999 8998876553 355999999965 99999888854 33336
Q ss_pred ccccChhhHHHHHH
Q 013319 397 KTGISVKDQKSSIH 410 (445)
Q Consensus 397 ~~~~~~~~~~~~~~ 410 (445)
++..+.++|.+|+.
T Consensus 99 ~~~~t~e~i~~Fv~ 112 (130)
T cd02983 99 KGSFSEDGINEFLR 112 (130)
T ss_pred cCccCHHHHHHHHH
Confidence 66777766544443
No 264
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=96.99 E-value=0.0025 Score=52.65 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=46.9
Q ss_pred CCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCccccc
Q 013319 330 RLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVL 396 (445)
Q Consensus 330 ~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~ 396 (445)
+.+++|.|+.... ..+.+..+|..+.+ +.|+.+++. .+ .++++|+|+.+||+++|+.++....+
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~-~~-~l~~~~~i~~~Pt~~~f~~G~~v~~~ 92 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAE-KA-FLVNYLDIKVLPTLLVYKNGELIDNI 92 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEch-hh-HHHHhcCCCcCCEEEEEECCEEEEEE
Confidence 3677888876543 26788999998864 778666544 33 99999999999999988776544443
No 265
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.98 E-value=0.0015 Score=55.47 Aligned_cols=87 Identities=13% Similarity=0.060 Sum_probs=49.5
Q ss_pred ccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhH---hCCccCCCcEEEE
Q 013319 203 ALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKE---LGVHRPRSPRIFA 278 (445)
Q Consensus 203 ~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~---~~I~~~~~Pti~~ 278 (445)
.++++.............++.|..+||+.|.. .|.+.++|+.. +.+.+--+.-+++.++-.+ .|...+ |++++
T Consensus 27 ~l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-p~i~~~~i~rd~~~el~~~~lt~g~~~I--P~~I~ 103 (129)
T PF14595_consen 27 QLSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEAN-PNIEVRIILRDENKELMDQYLTNGGRSI--PTFIF 103 (129)
T ss_dssp H--HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH--TTEEEEEE-HHHHHHHTTTTTT-SS--S--SEEEE
T ss_pred CCCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhC-CCCeEEEEEecCChhHHHHHHhCCCeec--CEEEE
Confidence 44444443322223446788899999999999 99999999975 4667766766777766554 467888 99999
Q ss_pred eccCCCCCCCeeeecCcc
Q 013319 279 YSYKAGDKGSLVEYNEHL 296 (445)
Q Consensus 279 f~~~~~~~g~~~~y~g~~ 296 (445)
+. .+++.+.--|++
T Consensus 104 ~d----~~~~~lg~wger 117 (129)
T PF14595_consen 104 LD----KDGKELGRWGER 117 (129)
T ss_dssp E-----TT--EEEEEESS
T ss_pred Ec----CCCCEeEEEcCC
Confidence 93 234555444443
No 266
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.95 E-value=0.0029 Score=59.61 Aligned_cols=84 Identities=21% Similarity=0.312 Sum_probs=62.3
Q ss_pred cEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCcc-----------chhhHhHhCCccCCCcEEEEeccCCCC
Q 013319 218 MTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCET-----------EASLCKELGVHRPRSPRIFAYSYKAGD 285 (445)
Q Consensus 218 ~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~-----------~~~lc~~~~I~~~~~Pti~~f~~~~~~ 285 (445)
+.-||.||...|++|+. +|+.+.++++++ +.+..|++|- +...+++++|..+ |++++...+
T Consensus 144 ~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~--PAl~Lv~~~--- 216 (248)
T PRK13703 144 HYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYF--PALMLVDPK--- 216 (248)
T ss_pred cceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCccc--ceEEEEECC---
Confidence 35799999999999999 999999999984 5565555543 2346788999999 999998432
Q ss_pred CCCeee-ecCcccHHHHHHHHHhh
Q 013319 286 KGSLVE-YNEHLVAKNLKSFCRDH 308 (445)
Q Consensus 286 ~g~~~~-y~g~~~~~~l~~fi~~~ 308 (445)
.+...+ -.|..+.++|.+=+...
T Consensus 217 t~~~~pv~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 217 SGSVRPLSYGFITQDDLAKRFLNV 240 (248)
T ss_pred CCcEEEEeeccCCHHHHHHHHHHH
Confidence 233333 34777888887766543
No 267
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=96.92 E-value=0.0036 Score=51.51 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=51.7
Q ss_pred cCCCCEEEEEecCCCC-----hHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCC
Q 013319 328 KARLPSVLLLSTKKET-----PIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNG 391 (445)
Q Consensus 328 ~~~~~~vvlF~~~~~~-----~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~ 391 (445)
..++++||-|+..+.. .+.+.++|.++.+.+.|+.+.++ +.++++++|+|+.-||.++|++++
T Consensus 12 ~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVD-ev~dva~~y~I~amPtfvffkngk 79 (114)
T cd02986 12 TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVD-KVPVYTQYFDISYIPSTIFFFNGQ 79 (114)
T ss_pred cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecc-ccHHHHHhcCceeCcEEEEEECCc
Confidence 3578899999877654 58899999999876888777766 678999999999999999776654
No 268
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=96.88 E-value=0.0044 Score=52.96 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=36.2
Q ss_pred CcEEEEEEE-CCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCccc
Q 013319 217 GMTWLLFFY-SPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCETE 259 (445)
Q Consensus 217 ~~~~lV~Fy-ap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~~ 259 (445)
+++++|.|| +.||+.|.. .+.+.++..++.. .+.+..|..+..
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~ 68 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSV 68 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 567899999 589999999 9999999998875 688888877654
No 269
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.86 E-value=0.0024 Score=47.53 Aligned_cols=51 Identities=12% Similarity=0.254 Sum_probs=37.5
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHh----CCccCCCcEEEEe
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKEL----GVHRPRSPRIFAY 279 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~----~I~~~~~Pti~~f 279 (445)
++.|+++||++|.. ...+++. .+.+..+|++.+....+++ ++..+ |+|++.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~v--P~i~~~ 57 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSV--PVVVIG 57 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCccc--CEEEEC
Confidence 57899999999998 7666642 4667778887765544433 67888 999873
No 270
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=96.86 E-value=0.0019 Score=55.71 Aligned_cols=46 Identities=9% Similarity=0.154 Sum_probs=36.3
Q ss_pred CcEEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCccchhh
Q 013319 217 GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCETEASL 262 (445)
Q Consensus 217 ~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~~~~l 262 (445)
+.++|+.|.+.||+.|+. .|.+.++.+++.. .+.+..|+.+.....
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~ 71 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKL 71 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHH
Confidence 334444445999999999 9999999999974 689999998876543
No 271
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.77 E-value=0.0021 Score=50.19 Aligned_cols=75 Identities=16% Similarity=0.329 Sum_probs=52.8
Q ss_pred EEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccch----hhHhHhC--CccCCCcEEEEeccCCCCCCCeeee
Q 013319 220 WLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEA----SLCKELG--VHRPRSPRIFAYSYKAGDKGSLVEY 292 (445)
Q Consensus 220 ~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~----~lc~~~~--I~~~~~Pti~~f~~~~~~~g~~~~y 292 (445)
-++.|+.+||++|+. ...+++++.++ ..+.+..+|.+.+. .+.+..+ +..+ |+|++ +|+.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~~~~v--P~ifi-------~g~~--- 68 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKPVETV--PQIFV-------DQKH--- 68 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCCCCcC--CEEEE-------CCEE---
Confidence 478899999999999 99999988765 46788888888753 3444444 4677 99875 2322
Q ss_pred cCcccHHHHHHHHHhhC
Q 013319 293 NEHLVAKNLKSFCRDHL 309 (445)
Q Consensus 293 ~g~~~~~~l~~fi~~~l 309 (445)
.| ..++|.+++..++
T Consensus 69 ig--g~~~~~~~~~~~~ 83 (85)
T PRK11200 69 IG--GCTDFEAYVKENL 83 (85)
T ss_pred Ec--CHHHHHHHHHHhc
Confidence 22 2367777776654
No 272
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=96.77 E-value=0.0022 Score=60.54 Aligned_cols=95 Identities=9% Similarity=0.067 Sum_probs=70.0
Q ss_pred cCCCCEEEEEecC-----CCChHHHHHHHHHhhcc---ceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccc
Q 013319 328 KARLPSVLLLSTK-----KETPIIWRVLSGMYHER---LNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTG 399 (445)
Q Consensus 328 ~~~~~~vvlF~~~-----~~~~~~~~~lA~~~~~~---~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~ 399 (445)
.++..|+|-|+.. +...++|..+...+++. ++++..... .-++++.+|+|.+||||.+| +++-..-|.++
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT-~f~aiAnefgiqGYPTIk~~-kgd~a~dYRG~ 118 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDAT-RFPAIANEFGIQGYPTIKFF-KGDHAIDYRGG 118 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccc-cchhhHhhhccCCCceEEEe-cCCeeeecCCC
Confidence 3445688888643 34688999998887653 234332221 45889999999999999954 55556679999
Q ss_pred cChhhHHHHHHHHHhhhhhhhhccc
Q 013319 400 ISVKDQKSSIHELSKLLDGLKKRTK 424 (445)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~~~~n~ 424 (445)
+++++|+++-+.-+..|..-|..|+
T Consensus 119 R~Kd~iieFAhR~a~aiI~pi~enQ 143 (468)
T KOG4277|consen 119 REKDAIIEFAHRCAAAIIEPINENQ 143 (468)
T ss_pred ccHHHHHHHHHhcccceeeecChhH
Confidence 9999999999988888877776653
No 273
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.73 E-value=0.0037 Score=53.82 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=41.9
Q ss_pred CcEEEEEEECCC-CccCCC-hhHHHHHHHHhcCccEEEEEeCccch---hhHhHhCCccC
Q 013319 217 GMTWLLFFYSPS-SNRDGY-ESVIEEVANSMEGALKVGSINCETEA---SLCKELGVHRP 271 (445)
Q Consensus 217 ~~~~lV~Fyap~-C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~---~lc~~~~I~~~ 271 (445)
+++++|.||+.| |++|+. .|.+.++.+++. .+.+..|+.+... +..+++++..+
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~ 84 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNV 84 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCc
Confidence 457999999998 699999 999999999985 6889999987642 33445554444
No 274
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=96.73 E-value=0.016 Score=52.49 Aligned_cols=96 Identities=13% Similarity=0.105 Sum_probs=63.6
Q ss_pred ccccChhhHHHHhhcCCcEEEEEEE-CCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCcc-------------------
Q 013319 201 IRALNLQVFKKEIVEKGMTWLLFFY-SPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCET------------------- 258 (445)
Q Consensus 201 V~~Lt~~~f~~~v~~~~~~~lV~Fy-ap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~------------------- 258 (445)
..+++.++| .++++++.|| +.||+.|.. .+.+.++..++.. .+.+..|+++.
T Consensus 21 ~~~v~L~d~------~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~f 94 (187)
T PRK10382 21 FIEVTEKDT------EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKY 94 (187)
T ss_pred ceEEEHHHh------CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCce
Confidence 355554455 2346888889 999999999 9999999999964 57777777654
Q ss_pred ------chhhHhHhCCc----cCCCcEEEEeccCCCCCCCeee---e--cCcccHHHHHHHHH
Q 013319 259 ------EASLCKELGVH----RPRSPRIFAYSYKAGDKGSLVE---Y--NEHLVAKNLKSFCR 306 (445)
Q Consensus 259 ------~~~lc~~~~I~----~~~~Pti~~f~~~~~~~g~~~~---y--~g~~~~~~l~~fi~ 306 (445)
+..+++.|++. +...|+.++.. ++|.+.. + ...++.+++...+.
T Consensus 95 pllsD~~~~ia~~ygv~~~~~g~~~r~tfIID----~~G~I~~~~~~~~~~~~~~~eil~~l~ 153 (187)
T PRK10382 95 AMIGDPTGALTRNFDNMREDEGLADRATFVVD----PQGIIQAIEVTAEGIGRDASDLLRKIK 153 (187)
T ss_pred eEEEcCchHHHHHcCCCcccCCceeeEEEEEC----CCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 23567778873 22227777772 3453322 1 12356777777775
No 275
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.70 E-value=0.011 Score=47.91 Aligned_cols=78 Identities=12% Similarity=0.187 Sum_probs=55.2
Q ss_pred cCCCCEEEEEecCCC-ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEcc-CCccccc-ccccChhh
Q 013319 328 KARLPSVLLLSTKKE-TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLS-NGEKDVL-KTGISVKD 404 (445)
Q Consensus 328 ~~~~~~vvlF~~~~~-~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~-~~~~~~~-~~~~~~~~ 404 (445)
....+++.+|.+... ....|.++|..++..+.|+.+ .+.++.+++++. .|+|+++++ +.....| .+..+.++
T Consensus 18 ~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~----~~~~~~~~~~~~-~~~i~l~~~~~e~~~~y~~g~~~~~~ 92 (102)
T cd03066 18 EDDIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFAT----FDSKVAKKLGLK-MNEVDFYEPFMEEPVTIPDKPYSEEE 92 (102)
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEE----CcHHHHHHcCCC-CCcEEEeCCCCCCCcccCCCCCCHHH
Confidence 344555666665443 467999999999999999665 567888999887 599998876 4444557 55556666
Q ss_pred HHHHHH
Q 013319 405 QKSSIH 410 (445)
Q Consensus 405 ~~~~~~ 410 (445)
|..|+.
T Consensus 93 l~~fi~ 98 (102)
T cd03066 93 LVDFVE 98 (102)
T ss_pred HHHHHH
Confidence 655554
No 276
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.66 E-value=0.0029 Score=55.55 Aligned_cols=84 Identities=12% Similarity=0.035 Sum_probs=55.0
Q ss_pred ccccChhhHHHHhhcCCcEEEEEEECCCCccCCC--hhHH--HHHHHHhcCccEEEEEeCccchhhHhHh--------CC
Q 013319 201 IRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY--ESVI--EEVANSMEGALKVGSINCETEASLCKEL--------GV 268 (445)
Q Consensus 201 V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~--~p~~--~~~a~~l~~~v~~~~Vdc~~~~~lc~~~--------~I 268 (445)
-...+++.|+. ....+++++|.++.+||.-|+. ...| .++|+.++..+.-++||.++.+.+...| +.
T Consensus 22 W~~w~~ea~~~-Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~ 100 (163)
T PF03190_consen 22 WQPWGEEALEK-AKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGS 100 (163)
T ss_dssp -B-SSHHHHHH-HHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS-
T ss_pred cccCCHHHHHH-HHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCC
Confidence 34566777854 5777889999999999999998 4455 4578888776777789999989887777 77
Q ss_pred ccCCCcEEEEeccCCCCCCCeee
Q 013319 269 HRPRSPRIFAYSYKAGDKGSLVE 291 (445)
Q Consensus 269 ~~~~~Pti~~f~~~~~~~g~~~~ 291 (445)
.++ |+.++.. ++|+++.
T Consensus 101 gGw--Pl~vflt----Pdg~p~~ 117 (163)
T PF03190_consen 101 GGW--PLTVFLT----PDGKPFF 117 (163)
T ss_dssp --S--SEEEEE-----TTS-EEE
T ss_pred CCC--CceEEEC----CCCCeee
Confidence 899 9988872 4555443
No 277
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.62 E-value=0.022 Score=43.60 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=49.2
Q ss_pred EEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccChhhHHH
Q 013319 333 SVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGISVKDQKS 407 (445)
Q Consensus 333 ~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~~~~~~ 407 (445)
.+.+|+.... ..+.+..++..+...+.+..+++. .+++++++|+|...|++++ ++. ..+.+..+.+++..
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~-~~~~~~~~~~v~~vPt~~~---~g~-~~~~G~~~~~~l~~ 76 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVM-ENPQKAMEYGIMAVPAIVI---NGD-VEFIGAPTKEELVE 76 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCc-cCHHHHHHcCCccCCEEEE---CCE-EEEecCCCHHHHHH
Confidence 3555654332 256778888888777777666554 6788999999999999984 443 25556556666655
Q ss_pred HHH
Q 013319 408 SIH 410 (445)
Q Consensus 408 ~~~ 410 (445)
.+.
T Consensus 77 ~l~ 79 (82)
T TIGR00411 77 AIK 79 (82)
T ss_pred HHH
Confidence 544
No 278
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.61 E-value=0.012 Score=47.80 Aligned_cols=76 Identities=12% Similarity=0.098 Sum_probs=54.2
Q ss_pred CCCCEEEEEecCCC-ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEcc-------CCccccccccc
Q 013319 329 ARLPSVLLLSTKKE-TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLS-------NGEKDVLKTGI 400 (445)
Q Consensus 329 ~~~~~vvlF~~~~~-~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~-------~~~~~~~~~~~ 400 (445)
...+++.+|.+... ....|.++|..+++.+.|+.+ .+.++.+++++ .|++++|++ ......|.+..
T Consensus 18 ~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~----~~~~~~~~~~~--~~~ivl~~p~~~~~k~de~~~~y~g~~ 91 (104)
T cd03069 18 DDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHT----SDKQLLEKYGY--GEGVVLFRPPRLSNKFEDSSVKFDGDL 91 (104)
T ss_pred CCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEE----ChHHHHHhcCC--CCceEEEechhhhcccCcccccccCcC
Confidence 44455556666443 578999999999999999665 56788999999 589998954 22334577766
Q ss_pred ChhhHHHHHH
Q 013319 401 SVKDQKSSIH 410 (445)
Q Consensus 401 ~~~~~~~~~~ 410 (445)
+.++|..|+.
T Consensus 92 ~~~~l~~fi~ 101 (104)
T cd03069 92 DSSKIKKFIR 101 (104)
T ss_pred CHHHHHHHHH
Confidence 6666666654
No 279
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.0068 Score=49.61 Aligned_cols=71 Identities=15% Similarity=0.280 Sum_probs=52.9
Q ss_pred hhHHHHhhc--CCcEEEEEEEC--------CCCccCCC-hhHHHHHHHHhcCccEEEEEeCccc-------hhhHhHhCC
Q 013319 207 QVFKKEIVE--KGMTWLLFFYS--------PSSNRDGY-ESVIEEVANSMEGALKVGSINCETE-------ASLCKELGV 268 (445)
Q Consensus 207 ~~f~~~v~~--~~~~~lV~Fya--------p~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~-------~~lc~~~~I 268 (445)
+.|++.+.+ +++..+|.|++ +||+.|.+ +|++.++-+.....+.|..|++..- ...-+..++
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~ 92 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGI 92 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCc
Confidence 445444432 33458999996 59999999 9999999997777899999998763 234455666
Q ss_pred -ccCCCcEEEEe
Q 013319 269 -HRPRSPRIFAY 279 (445)
Q Consensus 269 -~~~~~Pti~~f 279 (445)
.++ |||+=+
T Consensus 93 lt~v--PTLlrw 102 (128)
T KOG3425|consen 93 LTAV--PTLLRW 102 (128)
T ss_pred eeec--ceeeEE
Confidence 788 999887
No 280
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=96.59 E-value=0.012 Score=51.40 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=35.4
Q ss_pred CcEEEEEEECC-CCccCCC-hhHHHHHHHHhcC-ccEEEEEeCccc
Q 013319 217 GMTWLLFFYSP-SSNRDGY-ESVIEEVANSMEG-ALKVGSINCETE 259 (445)
Q Consensus 217 ~~~~lV~Fyap-~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~~ 259 (445)
++++||.||+. ||+.|.. .+.+.++.++++. .+.+..|+.+..
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~ 75 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKP 75 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 45789999975 6888999 9999999999875 688888887654
No 281
>PRK15000 peroxidase; Provisional
Probab=96.59 E-value=0.014 Score=53.56 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=36.0
Q ss_pred CcEEEEEEEC-CCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCcc
Q 013319 217 GMTWLLFFYS-PSSNRDGY-ESVIEEVANSMEG-ALKVGSINCET 258 (445)
Q Consensus 217 ~~~~lV~Fya-p~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~ 258 (445)
+++++|.||+ .||+.|.. .+.+.+++.+++. .+.+..|+++.
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~ 78 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDS 78 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4678999999 58999999 9999999999975 68888888774
No 282
>PTZ00051 thioredoxin; Provisional
Probab=96.53 E-value=0.012 Score=46.80 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=47.6
Q ss_pred cCCCCEEEEEecCCCC-----hHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCccccccc
Q 013319 328 KARLPSVLLLSTKKET-----PIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKT 398 (445)
Q Consensus 328 ~~~~~~vvlF~~~~~~-----~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~ 398 (445)
..+.+++|.|+..... .+.+.+++..+.+ +.|+.+++. .+..++++|+|.++||++++..++....+.+
T Consensus 16 ~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~-~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G 89 (98)
T PTZ00051 16 SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVD-ELSEVAEKENITSMPTFKVFKNGSVVDTLLG 89 (98)
T ss_pred hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECc-chHHHHHHCCCceeeEEEEEeCCeEEEEEeC
Confidence 4556778888765432 4667888887653 666554433 5688999999999999998865554444444
No 283
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=96.47 E-value=0.027 Score=47.22 Aligned_cols=84 Identities=11% Similarity=0.064 Sum_probs=52.0
Q ss_pred cCC-CCEEEEEecCCCC-h----HHH---HHHHHHhhccceEEEEeecCC------------ChHHHHHcCCCCCCeEEE
Q 013319 328 KAR-LPSVLLLSTKKET-P----IIW---RVLSGMYHERLNFYDTEVHDV------------SDPAVKKLGVDALPAIVG 386 (445)
Q Consensus 328 ~~~-~~~vvlF~~~~~~-~----~~~---~~lA~~~~~~~~f~~~~v~~~------------~~~l~~~f~V~~~Ptlv~ 386 (445)
..+ ++++|.|+..+.. . +.+ ..+...+.+.+.++.+++... ..+++.+|+|..+||+++
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~ 90 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIF 90 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEE
Confidence 445 7888888765432 1 111 145555555566655555432 368999999999999998
Q ss_pred EccC-Cc-ccccccccChhhHHHHHHH
Q 013319 387 WLSN-GE-KDVLKTGISVKDQKSSIHE 411 (445)
Q Consensus 387 ~~~~-~~-~~~~~~~~~~~~~~~~~~~ 411 (445)
+.++ ++ ...+.+..+.+++.+.+..
T Consensus 91 ~~~~gg~~~~~~~G~~~~~~~~~~l~~ 117 (125)
T cd02951 91 LDPEGGKEIARLPGYLPPDEFLAYLEY 117 (125)
T ss_pred EcCCCCceeEEecCCCCHHHHHHHHHH
Confidence 9887 44 3345455555555444443
No 284
>PRK13190 putative peroxiredoxin; Provisional
Probab=96.42 E-value=0.018 Score=52.84 Aligned_cols=83 Identities=6% Similarity=0.045 Sum_probs=58.0
Q ss_pred EEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCcc---------------------------chhhHhHhCCc-
Q 013319 220 WLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCET---------------------------EASLCKELGVH- 269 (445)
Q Consensus 220 ~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~---------------------------~~~lc~~~~I~- 269 (445)
+|+.|.+.||+.|.. .+.+.++..+++. .+.+..|+++. +..+++.|++.
T Consensus 31 vL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~ 110 (202)
T PRK13190 31 LLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLID 110 (202)
T ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCcc
Confidence 344678999999999 9999999999875 57777777763 13566777774
Q ss_pred -----cCCCcEEEEeccCCCCCCCeee---e--cCcccHHHHHHHHHhh
Q 013319 270 -----RPRSPRIFAYSYKAGDKGSLVE---Y--NEHLVAKNLKSFCRDH 308 (445)
Q Consensus 270 -----~~~~Pti~~f~~~~~~~g~~~~---y--~g~~~~~~l~~fi~~~ 308 (445)
.+ |+.+++. ++|.+.. | ...++.++|...+...
T Consensus 111 ~~~g~~~--p~~fiId----~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 111 ENSGATV--RGVFIID----PNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred ccCCcEE--eEEEEEC----CCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 35 8888872 3453322 1 3356888888877653
No 285
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.40 E-value=0.022 Score=60.06 Aligned_cols=95 Identities=14% Similarity=0.098 Sum_probs=73.0
Q ss_pred cccChhhHHHHhhcC-CcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEe
Q 013319 202 RALNLQVFKKEIVEK-GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAY 279 (445)
Q Consensus 202 ~~Lt~~~f~~~v~~~-~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f 279 (445)
..|+++.-+ .+..- +..-+-.|+++.|++|.. ...+.+++..- +.|..-.||+.+.++++++|+|.++ |++++=
T Consensus 102 ~~l~~~~~~-~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-p~i~~~~id~~~~~~~~~~~~v~~V--P~~~i~ 177 (515)
T TIGR03140 102 PKLDEGIID-RIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN-PNISHTMIDGALFQDEVEALGIQGV--PAVFLN 177 (515)
T ss_pred CCCCHHHHH-HHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCceEEEEEchhCHHHHHhcCCccc--CEEEEC
Confidence 456655553 34443 345688899999999999 88888888774 4788888999999999999999999 999872
Q ss_pred ccCCCCCCCeeeecCcccHHHHHHHHHhh
Q 013319 280 SYKAGDKGSLVEYNEHLVAKNLKSFCRDH 308 (445)
Q Consensus 280 ~~~~~~~g~~~~y~g~~~~~~l~~fi~~~ 308 (445)
+. ..+.|..+.+++.+.+.+.
T Consensus 178 -------~~-~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 178 -------GE-EFHNGRMDLAELLEKLEET 198 (515)
T ss_pred -------Cc-EEEecCCCHHHHHHHHhhc
Confidence 22 4577887888887777654
No 286
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=96.38 E-value=0.0069 Score=52.37 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=35.9
Q ss_pred cEEEEEEE-CCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCccc
Q 013319 218 MTWLLFFY-SPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCETE 259 (445)
Q Consensus 218 ~~~lV~Fy-ap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~~ 259 (445)
++++|.|| +.||+.|.. .|.+.++.+++.. .+.+..|+.+..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~ 73 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSP 73 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCH
Confidence 56777777 999999999 9999999999975 688999987754
No 287
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.028 Score=48.31 Aligned_cols=86 Identities=14% Similarity=0.215 Sum_probs=59.3
Q ss_pred HHhhcCCcEEEEEEECCCCccCCC-hhHH---HHHHHHhcCccEEEEEeCccc----------------hhhHhHhCCcc
Q 013319 211 KEIVEKGMTWLLFFYSPSSNRDGY-ESVI---EEVANSMEGALKVGSINCETE----------------ASLCKELGVHR 270 (445)
Q Consensus 211 ~~v~~~~~~~lV~Fyap~C~~C~~-~p~~---~~~a~~l~~~v~~~~Vdc~~~----------------~~lc~~~~I~~ 270 (445)
+.+...++..+++|-++.|..|.. .... +++-+-+.+.+.+..+|.... .+|++.++|++
T Consensus 36 ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrs 115 (182)
T COG2143 36 KSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRS 115 (182)
T ss_pred HhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcccc
Confidence 335566778999999999999977 4332 334444555566666665432 58999999999
Q ss_pred CCCcEEEEeccCCCCCCCee-eecCcccHHHHH
Q 013319 271 PRSPRIFAYSYKAGDKGSLV-EYNEHLVAKNLK 302 (445)
Q Consensus 271 ~~~Pti~~f~~~~~~~g~~~-~y~g~~~~~~l~ 302 (445)
. ||+++|. .+|+.+ ...|-...+++.
T Consensus 116 t--PtfvFfd----k~Gk~Il~lPGY~ppe~Fl 142 (182)
T COG2143 116 T--PTFVFFD----KTGKTILELPGYMPPEQFL 142 (182)
T ss_pred C--ceEEEEc----CCCCEEEecCCCCCHHHHH
Confidence 9 9999994 345444 456766666543
No 288
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=96.32 E-value=0.0072 Score=51.75 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=36.6
Q ss_pred CCcEEEEEEECCCCcc-CCC-hhHHHHHHHHhcC----ccEEEEEeCcc
Q 013319 216 KGMTWLLFFYSPSSNR-DGY-ESVIEEVANSMEG----ALKVGSINCET 258 (445)
Q Consensus 216 ~~~~~lV~Fyap~C~~-C~~-~p~~~~~a~~l~~----~v~~~~Vdc~~ 258 (445)
.+++++|.||++||+. |.. .+.+.++.++++. .+.+..|+++.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 3568999999999997 999 9999999999975 38888888754
No 289
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.08 E-value=0.18 Score=53.26 Aligned_cols=168 Identities=12% Similarity=0.098 Sum_probs=90.6
Q ss_pred cEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEeccCCCCCCCeeeecCcc
Q 013319 218 MTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYSYKAGDKGSLVEYNEHL 296 (445)
Q Consensus 218 ~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g~~ 296 (445)
+++-+.++.+.|..|.. ....+++++. .+.+++-..+- . ... |++.+...+ +...+.|.|-.
T Consensus 19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~-s~~i~~~~~~~------~-----~~~--p~~~~~~~~---~~~~i~f~g~P 81 (517)
T PRK15317 19 RPIELVASLDDSEKSAELKELLEEIASL-SDKITVEEDSL------D-----VRK--PSFSITRPG---EDTGVRFAGIP 81 (517)
T ss_pred CCEEEEEEeCCCchHHHHHHHHHHHHHh-CCceEEEEccC------C-----CCC--CEEEEEcCC---ccceEEEEecC
Confidence 34444444557999988 7777777665 45666533221 0 235 999997321 12358899987
Q ss_pred cHHHHHHHHHhhCCC--CceeccccccchhhhccCCCCEEEEEe-cCCC-ChHH---HHHHHHHhhccceEEEEeecCCC
Q 013319 297 VAKNLKSFCRDHLPR--FSKRISLNRIEFTFDAKARLPSVLLLS-TKKE-TPII---WRVLSGMYHERLNFYDTEVHDVS 369 (445)
Q Consensus 297 ~~~~l~~fi~~~lp~--~~~~i~~~~~~~~~~~~~~~~~vvlF~-~~~~-~~~~---~~~lA~~~~~~~~f~~~~v~~~~ 369 (445)
.-.++..||...+.- ....++....+..... +....+.+|. ..+. +|.. ...+|.. ...+.+-.++.. ..
T Consensus 82 ~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~-~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-~~~i~~~~id~~-~~ 158 (517)
T PRK15317 82 MGHEFTSLVLALLQVGGHPPKLDQEVIEQIKAL-DGDFHFETYVSLSCHNCPDVVQALNLMAVL-NPNITHTMIDGA-LF 158 (517)
T ss_pred ccHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhc-CCCeEEEEEEcCCCCCcHHHHHHHHHHHHh-CCCceEEEEEch-hC
Confidence 778888888865432 1222222222222222 2223344443 3322 3432 2333332 234444222221 67
Q ss_pred hHHHHHcCCCCCCeEEEEccCCcccccccccChhhHHHHH
Q 013319 370 DPAVKKLGVDALPAIVGWLSNGEKDVLKTGISVKDQKSSI 409 (445)
Q Consensus 370 ~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~~~~~~~~ 409 (445)
++++++|+|...|++++ |++ .++.+..+.+++...+
T Consensus 159 ~~~~~~~~v~~VP~~~i---~~~-~~~~g~~~~~~~~~~~ 194 (517)
T PRK15317 159 QDEVEARNIMAVPTVFL---NGE-EFGQGRMTLEEILAKL 194 (517)
T ss_pred HhHHHhcCCcccCEEEE---CCc-EEEecCCCHHHHHHHH
Confidence 99999999999999974 332 3455555555554443
No 290
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=96.07 E-value=0.039 Score=50.70 Aligned_cols=40 Identities=8% Similarity=0.023 Sum_probs=34.3
Q ss_pred EEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCcc
Q 013319 219 TWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCET 258 (445)
Q Consensus 219 ~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~ 258 (445)
++|+.|++.||+.|.. .+.+.+++++++. .+.+..|+++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 4566788999999999 9999999999975 68888888774
No 291
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.06 E-value=0.007 Score=46.54 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=37.4
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccch-----hhHhHhCCccCCCcEEEE
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEA-----SLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~-----~lc~~~~I~~~~~Pti~~ 278 (445)
++.|+++||++|+. .+.++++.. ...+..|+.+.+. .+-+..++..+ |++++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~--P~v~~ 59 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTV--PNVFI 59 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCC--CeEEE
Confidence 58899999999999 888877655 3456666665542 24455688888 99855
No 292
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=96.06 E-value=0.045 Score=52.19 Aligned_cols=84 Identities=14% Similarity=0.098 Sum_probs=58.4
Q ss_pred CcEEEEEEE-CCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCccc----------------------------hhhHhH
Q 013319 217 GMTWLLFFY-SPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCETE----------------------------ASLCKE 265 (445)
Q Consensus 217 ~~~~lV~Fy-ap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~~----------------------------~~lc~~ 265 (445)
++++|+.|| +.||+.|.. .+.+.++.++++. .+.+..|.++.. ..+|+.
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iaka 177 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKS 177 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHH
Confidence 345677777 899999999 9999999999975 577777777641 356778
Q ss_pred hCCc-----cCCCcEEEEeccCCCCCCCeee---e--cCcccHHHHHHHHH
Q 013319 266 LGVH-----RPRSPRIFAYSYKAGDKGSLVE---Y--NEHLVAKNLKSFCR 306 (445)
Q Consensus 266 ~~I~-----~~~~Pti~~f~~~~~~~g~~~~---y--~g~~~~~~l~~fi~ 306 (445)
||+. .. |+.+++. ++|.+.. + ...++.+++...|.
T Consensus 178 yGv~~~~g~a~--R~tFIID----~dG~I~~~~~~~~~~gr~v~eiLr~l~ 222 (261)
T PTZ00137 178 FGLLRDEGFSH--RASVLVD----KAGVVKHVAVYDLGLGRSVDETLRLFD 222 (261)
T ss_pred cCCCCcCCcee--cEEEEEC----CCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 8874 35 8888872 3453322 2 22456777777665
No 293
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=96.05 E-value=0.016 Score=49.31 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=37.7
Q ss_pred CCcEEEEEEE-CCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCccch
Q 013319 216 KGMTWLLFFY-SPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCETEA 260 (445)
Q Consensus 216 ~~~~~lV~Fy-ap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~~~ 260 (445)
.+++++|.|| +.||+.|.. .|.+.++..+++. .+.+..|+.+...
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~ 68 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPF 68 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 4567888988 789999999 9999999999853 7889999876543
No 294
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.99 E-value=0.026 Score=50.62 Aligned_cols=60 Identities=17% Similarity=0.188 Sum_probs=45.1
Q ss_pred CCEEEEEecCCCC-----hHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcc
Q 013319 331 LPSVLLLSTKKET-----PIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEK 393 (445)
Q Consensus 331 ~~~vvlF~~~~~~-----~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~ 393 (445)
.++||.|+..+.. .+.+..||..+. .++|+.+++.. . .++.+|+|..+||+++|+.++..
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~-~-~l~~~f~v~~vPTlllyk~G~~v 148 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASA-T-GASDEFDTDALPALLVYKGGELI 148 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccc-h-hhHHhCCCCCCCEEEEEECCEEE
Confidence 4788888765432 578999999885 58886665542 2 79999999999999988876533
No 295
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.0047 Score=55.32 Aligned_cols=53 Identities=45% Similarity=0.633 Sum_probs=47.0
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--------hHHHHHHHHHHHHHHHc
Q 013319 30 VDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN--------KAAQEKFAEINNAYDIL 82 (445)
Q Consensus 30 ~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~--------~~~~~~f~~i~~Ay~~L 82 (445)
.+.|.+|++...++..+|+++|+++....|||+-.. ..+.+++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999998432 35788899999999854
No 296
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=95.95 E-value=0.012 Score=42.45 Aligned_cols=50 Identities=10% Similarity=0.290 Sum_probs=37.5
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhh----HhHhCCccCCCcEEEE
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASL----CKELGVHRPRSPRIFA 278 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~l----c~~~~I~~~~~Pti~~ 278 (445)
++.|..+||++|+. ...++ . ..+.+-.+|++.+++. .+..+...+ |+|++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~----~--~~i~y~~~dv~~~~~~~~~l~~~~g~~~~--P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLD----E--KGIPYEEVDVDEDEEAREELKELSGVRTV--PQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHH----H--TTBEEEEEEGGGSHHHHHHHHHHHSSSSS--SEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHH----H--cCCeeeEcccccchhHHHHHHHHcCCCcc--CEEEE
Confidence 57899999999998 65553 2 2588888998887533 333488999 99987
No 297
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=95.93 E-value=0.038 Score=45.65 Aligned_cols=71 Identities=8% Similarity=0.127 Sum_probs=61.9
Q ss_pred hhHHHHhhcC-CcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEe
Q 013319 207 QVFKKEIVEK-GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAY 279 (445)
Q Consensus 207 ~~f~~~v~~~-~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f 279 (445)
...++.|... .++++|-|-..|.+.|.. .....++|+.+...+.++-||.++-+.+.+-|++... ||+++|
T Consensus 12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p--~tvmfF 84 (142)
T KOG3414|consen 12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDP--PTVMFF 84 (142)
T ss_pred HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCC--ceEEEE
Confidence 3455555544 458899999999999999 9999999999999999999999999999999999999 998887
No 298
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=95.90 E-value=0.051 Score=44.81 Aligned_cols=80 Identities=15% Similarity=0.129 Sum_probs=52.4
Q ss_pred CCCEEEEEecCC---CChHHHHHHHHH---hhccceEEEEeecCCChHHHHHcCCCC--CCeEEEEccCCcccc---ccc
Q 013319 330 RLPSVLLLSTKK---ETPIIWRVLSGM---YHERLNFYDTEVHDVSDPAVKKLGVDA--LPAIVGWLSNGEKDV---LKT 398 (445)
Q Consensus 330 ~~~~vvlF~~~~---~~~~~~~~lA~~---~~~~~~f~~~~v~~~~~~l~~~f~V~~--~Ptlv~~~~~~~~~~---~~~ 398 (445)
..|..++|.... .....++.+|.. +++++.|+.+.... .....+.||++. +|.+++...++ ... +.+
T Consensus 16 ~~~~~~l~f~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~-~~~~~~~fgl~~~~~P~i~i~~~~~-~~Ky~~~~~ 93 (111)
T cd03072 16 GLPFLILFHDKDDLESLKEFKQAVARQLISEKGAINFLTADGDK-FRHPLLHLGKTPADLPVIAIDSFRH-MYLFPDFED 93 (111)
T ss_pred CCCeEEEEecchHHHHHHHHHHHHHHHHHhcCceEEEEEEechH-hhhHHHHcCCCHhHCCEEEEEcchh-cCcCCCCcc
Confidence 344454444332 247789999999 99999997776543 234899999998 99998766633 123 345
Q ss_pred ccChhhHHHHHHH
Q 013319 399 GISVKDQKSSIHE 411 (445)
Q Consensus 399 ~~~~~~~~~~~~~ 411 (445)
..+.++|++|+.+
T Consensus 94 ~~t~~~i~~Fv~~ 106 (111)
T cd03072 94 VYVPGKLKQFVLD 106 (111)
T ss_pred ccCHHHHHHHHHH
Confidence 5555566555544
No 299
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=95.87 E-value=0.056 Score=49.50 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=35.3
Q ss_pred CcEEEEEEEC-CCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCcc
Q 013319 217 GMTWLLFFYS-PSSNRDGY-ESVIEEVANSMEG-ALKVGSINCET 258 (445)
Q Consensus 217 ~~~~lV~Fya-p~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~ 258 (445)
+++.+|.||+ .||+.|.. .+.+.++++++.. .+.+..|+++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~ 80 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDS 80 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 4567788995 88999999 9999999999986 68888888874
No 300
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=95.76 E-value=0.043 Score=51.52 Aligned_cols=80 Identities=21% Similarity=0.331 Sum_probs=56.0
Q ss_pred CCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEE------------------EE----------------------
Q 013319 216 KGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVG------------------SI---------------------- 254 (445)
Q Consensus 216 ~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~------------------~V---------------------- 254 (445)
+.+..++.|..|.|++|++ .+.++++.+. + |.+. .|
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~-v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--G-ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--C-eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 3457899999999999999 8888776431 1 1110 01
Q ss_pred eC----ccchhhHhHhCCccCCCcEEEEeccCCCCCCCeeeecCcccHHHHHHHHHhh
Q 013319 255 NC----ETEASLCKELGVHRPRSPRIFAYSYKAGDKGSLVEYNEHLVAKNLKSFCRDH 308 (445)
Q Consensus 255 dc----~~~~~lc~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g~~~~~~l~~fi~~~ 308 (445)
.| .++..+++++||++. |+|++ .+|+. ..|..+.++|.+++.+.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gT--Ptiv~------~~G~~--~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGT--PAIVL------SNGTL--VPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccc--cEEEE------cCCeE--eeCCCCHHHHHHHHHHc
Confidence 12 223578999999999 99995 34543 47888889999988753
No 301
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.72 E-value=0.014 Score=43.03 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=36.2
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhH----hHhCCccCCCcEEEE
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLC----KELGVHRPRSPRIFA 278 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc----~~~~I~~~~~Pti~~ 278 (445)
++.|+++||++|+. ...+++.. +.+-.+|+..+..+. +..+...+ |++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~--P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTV--PQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCc--CEEEE
Confidence 57899999999999 77666543 677788888766433 33466677 88754
No 302
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.72 E-value=0.014 Score=45.78 Aligned_cols=75 Identities=16% Similarity=0.294 Sum_probs=49.3
Q ss_pred EEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccch----hhHhHhCC--ccCCCcEEEEeccCCCCCCCeeee
Q 013319 220 WLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEA----SLCKELGV--HRPRSPRIFAYSYKAGDKGSLVEY 292 (445)
Q Consensus 220 ~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~----~lc~~~~I--~~~~~Pti~~f~~~~~~~g~~~~y 292 (445)
+++.|..+||++|.. ...++++..+. ..+.+-.+|.+.+. .+.+..+- ..+ |+|++ +++ +
T Consensus 1 ~V~vys~~~Cp~C~~ak~~L~~~~~~~-~~i~~~~idi~~~~~~~~~l~~~~g~~~~tV--P~ifi-------~g~---~ 67 (86)
T TIGR02183 1 FVVIFGRPGCPYCVRAKQLAEKLAIER-ADFEFRYIDIHAEGISKADLEKTVGKPVETV--PQIFV-------DEK---H 67 (86)
T ss_pred CEEEEeCCCCccHHHHHHHHHHhCccc-CCCcEEEEECCCCHHHHHHHHHHhCCCCCCc--CeEEE-------CCE---E
Confidence 368899999999999 77777665443 24667778877532 45555553 678 99865 222 2
Q ss_pred cCcccHHHHHHHHHhhC
Q 013319 293 NEHLVAKNLKSFCRDHL 309 (445)
Q Consensus 293 ~g~~~~~~l~~fi~~~l 309 (445)
.|. .++|.+++.+..
T Consensus 68 igG--~~dl~~~~~~~~ 82 (86)
T TIGR02183 68 VGG--CTDFEQLVKENF 82 (86)
T ss_pred ecC--HHHHHHHHHhcc
Confidence 232 477888877654
No 303
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.66 E-value=0.41 Score=50.58 Aligned_cols=163 Identities=12% Similarity=0.130 Sum_probs=87.5
Q ss_pred EEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEeccCCCCCCCeeeecCccc
Q 013319 219 TWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYSYKAGDKGSLVEYNEHLV 297 (445)
Q Consensus 219 ~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g~~~ 297 (445)
+.|+.|.. .|..|.. ....+++++. .+.+.+-..+-. .... |++.++..+. ...+.|.|-..
T Consensus 21 v~~~~~~~-~~~~~~~~~~~~~~~~~~-s~ki~~~~~~~~----------~~~~--p~~~~~~~~~---~~~i~f~g~P~ 83 (515)
T TIGR03140 21 VTLVLSAG-SHEKSKELLELLDEIASL-SDKISLTQNTAD----------TLRK--PSFTILRDGA---DTGIRFAGIPG 83 (515)
T ss_pred EEEEEEeC-CCchhHHHHHHHHHHHHh-CCCeEEEEecCC----------cCCC--CeEEEecCCc---ccceEEEecCC
Confidence 44555555 6888988 7777777664 456666433311 1345 9998873221 13488999777
Q ss_pred HHHHHHHHHhhCCC--CceeccccccchhhhccCCCCEEEEE-ecCCC-ChHHHHHHHHHhh---ccceEEEEeecC-CC
Q 013319 298 AKNLKSFCRDHLPR--FSKRISLNRIEFTFDAKARLPSVLLL-STKKE-TPIIWRVLSGMYH---ERLNFYDTEVHD-VS 369 (445)
Q Consensus 298 ~~~l~~fi~~~lp~--~~~~i~~~~~~~~~~~~~~~~~vvlF-~~~~~-~~~~~~~lA~~~~---~~~~f~~~~v~~-~~ 369 (445)
-.++..|+...+.- ....++.+..+..... +....+.+| +..+. +|.. ..++..+. ..+..-. ++. ..
T Consensus 84 g~Ef~s~i~~i~~~~~~~~~l~~~~~~~~~~~-~~~~~i~~f~~~~Cp~Cp~~-v~~~~~~a~~~p~i~~~~--id~~~~ 159 (515)
T TIGR03140 84 GHEFTSLVLAILQVGGHGPKLDEGIIDRIRRL-NGPLHFETYVSLTCQNCPDV-VQALNQMALLNPNISHTM--IDGALF 159 (515)
T ss_pred cHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhc-CCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhCCCceEEE--EEchhC
Confidence 78888888765432 1222222222222222 222334444 33333 3432 22223322 2343322 222 67
Q ss_pred hHHHHHcCCCCCCeEEEEccCCcccccccccChhhHH
Q 013319 370 DPAVKKLGVDALPAIVGWLSNGEKDVLKTGISVKDQK 406 (445)
Q Consensus 370 ~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~~~~~ 406 (445)
++++++|+|..+|++++ |++ .++.+..+.+++.
T Consensus 160 ~~~~~~~~v~~VP~~~i---~~~-~~~~g~~~~~~~~ 192 (515)
T TIGR03140 160 QDEVEALGIQGVPAVFL---NGE-EFHNGRMDLAELL 192 (515)
T ss_pred HHHHHhcCCcccCEEEE---CCc-EEEecCCCHHHHH
Confidence 89999999999999984 322 3454555555553
No 304
>PRK13599 putative peroxiredoxin; Provisional
Probab=95.61 E-value=0.047 Score=50.68 Aligned_cols=83 Identities=12% Similarity=0.093 Sum_probs=57.9
Q ss_pred EEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCccc---------------------------hhhHhHhCCc
Q 013319 219 TWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCETE---------------------------ASLCKELGVH 269 (445)
Q Consensus 219 ~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~~---------------------------~~lc~~~~I~ 269 (445)
++|+.|.+.||+.|.. .+.+.++..++.. .+.+..|+++.. ..+++.||+.
T Consensus 31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~ 110 (215)
T PRK13599 31 FVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMI 110 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCC
Confidence 3567889999999999 9999999999975 688888888752 2456677763
Q ss_pred -------cCCCcEEEEeccCCCCCCCeee---ec--CcccHHHHHHHHHh
Q 013319 270 -------RPRSPRIFAYSYKAGDKGSLVE---YN--EHLVAKNLKSFCRD 307 (445)
Q Consensus 270 -------~~~~Pti~~f~~~~~~~g~~~~---y~--g~~~~~~l~~fi~~ 307 (445)
.. |+.+++. .+|++.. |. ..++.++|...+..
T Consensus 111 ~~~~~~~~~--R~tfIID----~dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 111 HPGKGTNTV--RAVFIVD----DKGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred ccCCCCcee--eEEEEEC----CCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 45 8888872 3443221 22 23466777777754
No 305
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=95.58 E-value=0.033 Score=45.39 Aligned_cols=75 Identities=15% Similarity=0.309 Sum_probs=54.9
Q ss_pred ccccChhhHHHHhhcCCcEEEEEEECCCCccCCC-hh---HHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEE
Q 013319 201 IRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ES---VIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRI 276 (445)
Q Consensus 201 V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p---~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti 276 (445)
...++.++++..+.... ..|.|.+..|..+.+ .. +.-|+.+.+.+.+..+.|.-..+..|..+|++..+ |++
T Consensus 11 ~~~vd~~~ld~~l~~~~--~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~--PaL 86 (107)
T PF07449_consen 11 WPRVDADTLDAFLAAPG--DAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRW--PAL 86 (107)
T ss_dssp EEEE-CCCHHHHHHCCS--CEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSS--SEE
T ss_pred CeeechhhHHHHHhCCC--cEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccC--CeE
Confidence 45677777877665544 455666666655555 44 67777777878888888998888999999999999 999
Q ss_pred EEe
Q 013319 277 FAY 279 (445)
Q Consensus 277 ~~f 279 (445)
++|
T Consensus 87 vf~ 89 (107)
T PF07449_consen 87 VFF 89 (107)
T ss_dssp EEE
T ss_pred EEE
Confidence 999
No 306
>PRK13189 peroxiredoxin; Provisional
Probab=95.55 E-value=0.078 Score=49.45 Aligned_cols=40 Identities=3% Similarity=-0.111 Sum_probs=32.8
Q ss_pred EEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCcc
Q 013319 219 TWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCET 258 (445)
Q Consensus 219 ~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~ 258 (445)
++|+.|.+.||+.|.. .+.+.+++.+++. .+.+..|+++.
T Consensus 38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~ 79 (222)
T PRK13189 38 FVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQ 79 (222)
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 4455677999999999 9999999999975 57788887764
No 307
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=95.54 E-value=0.057 Score=44.53 Aligned_cols=66 Identities=12% Similarity=0.150 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHhh-ccceEEEEeecCCChHHHHHcCCCC----CCeEEEEccCCccccc--cccc-ChhhHHHHHHH
Q 013319 343 TPIIWRVLSGMYH-ERLNFYDTEVHDVSDPAVKKLGVDA----LPAIVGWLSNGEKDVL--KTGI-SVKDQKSSIHE 411 (445)
Q Consensus 343 ~~~~~~~lA~~~~-~~~~f~~~~v~~~~~~l~~~f~V~~----~Ptlv~~~~~~~~~~~--~~~~-~~~~~~~~~~~ 411 (445)
....++.+|..|+ +++.|+.+.+. ....+.+.||++. +|++++...++ ..| .+.. +.+.|+.|+++
T Consensus 36 ~~~~~~~vAk~fk~gki~Fv~~D~~-~~~~~l~~fgl~~~~~~~P~~~i~~~~~--~KY~~~~~~~t~e~i~~F~~~ 109 (111)
T cd03073 36 WRNRVLKVAKDFPDRKLNFAVADKE-DFSHELEEFGLDFSGGEKPVVAIRTAKG--KKYVMEEEFSDVDALEEFLED 109 (111)
T ss_pred HHHHHHHHHHHCcCCeEEEEEEcHH-HHHHHHHHcCCCcccCCCCEEEEEeCCC--CccCCCcccCCHHHHHHHHHH
Confidence 4778999999999 79999776544 2344888999985 89999766543 334 4445 55666555543
No 308
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.48 E-value=0.076 Score=43.46 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=42.8
Q ss_pred CCCEEEEEecCCC-ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccC
Q 013319 330 RLPSVLLLSTKKE-TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSN 390 (445)
Q Consensus 330 ~~~~vvlF~~~~~-~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~ 390 (445)
..++|.+|.+... ....|.++|..+++.+.|+.+ .+.++.+++++.. |++++|++.
T Consensus 20 ~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t----~~~~~~~~~~~~~-~~vvl~rp~ 76 (107)
T cd03068 20 DVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHT----FDSEIFKSLKVSP-GQLVVFQPE 76 (107)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEE----ChHHHHHhcCCCC-CceEEECcH
Confidence 4555666766544 578899999999999999665 4678889999874 888888653
No 309
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=95.43 E-value=0.055 Score=49.40 Aligned_cols=79 Identities=19% Similarity=0.260 Sum_probs=50.5
Q ss_pred CcEEEEEEECCCCccCCC-hhHHHHHHHHh------------------------------------cC-c----cEEEEE
Q 013319 217 GMTWLLFFYSPSSNRDGY-ESVIEEVANSM------------------------------------EG-A----LKVGSI 254 (445)
Q Consensus 217 ~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l------------------------------------~~-~----v~~~~V 254 (445)
.++.++.|+.|.|++|+. .+.+.+....+ .+ . ......
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~~~ 156 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASCDN 156 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccccCc
Confidence 468999999999999999 87776410000 00 0 011122
Q ss_pred eCccchhhHhHhCCccCCCcEEEEeccCCCCCCCeeeecCcccHHHHHHHH
Q 013319 255 NCETEASLCKELGVHRPRSPRIFAYSYKAGDKGSLVEYNEHLVAKNLKSFC 305 (445)
Q Consensus 255 dc~~~~~lc~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g~~~~~~l~~fi 305 (445)
+.+++..+++++||++. |+|+ + .+|.. ..|..+.++|.+++
T Consensus 157 ~i~~~~~l~~~~gi~gt--Ptii-~-----~~G~~--~~G~~~~~~l~~~L 197 (197)
T cd03020 157 PVAANLALGRQLGVNGT--PTIV-L-----ADGRV--VPGAPPAAQLEALL 197 (197)
T ss_pred hHHHHHHHHHHcCCCcc--cEEE-E-----CCCeE--ecCCCCHHHHHhhC
Confidence 22334678999999999 9998 4 34433 56777777787663
No 310
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.26 E-value=0.054 Score=43.92 Aligned_cols=81 Identities=15% Similarity=0.196 Sum_probs=53.9
Q ss_pred ChhhHHHHhhcC-CcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccch----hhHhHhCCccCCCcEEEE
Q 013319 205 NLQVFKKEIVEK-GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEA----SLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 205 t~~~f~~~v~~~-~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~----~lc~~~~I~~~~~Pti~~ 278 (445)
|.+++++.+..+ ..+++|.=.+..|+-+.. ...|++......+.+.++.+|+-+++ .+++++||+. ..|.+++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~H-eSPQ~il 84 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKH-ESPQVIL 84 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT-----SSEEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCc-CCCcEEE
Confidence 456776655543 457777778888999888 88888888887666999999999986 5688999976 4599999
Q ss_pred eccCCCCCCCeee
Q 013319 279 YSYKAGDKGSLVE 291 (445)
Q Consensus 279 f~~~~~~~g~~~~ 291 (445)
+ .+|+++-
T Consensus 85 i-----~~g~~v~ 92 (105)
T PF11009_consen 85 I-----KNGKVVW 92 (105)
T ss_dssp E-----ETTEEEE
T ss_pred E-----ECCEEEE
Confidence 9 4565444
No 311
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.22 E-value=0.027 Score=43.26 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=37.3
Q ss_pred EEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccc---hhhHhHhCCccCCCcEEEE
Q 013319 220 WLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETE---ASLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 220 ~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~---~~lc~~~~I~~~~~Pti~~ 278 (445)
-++.|..+||++|+. ...+++. .+.+-.+|++++ ..+.+..+...+ |+|++
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~v--P~i~i 63 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTV--PQVFI 63 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCc--CeEEE
Confidence 578999999999999 6555422 466667888766 344455688888 99865
No 312
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.18 E-value=0.13 Score=46.73 Aligned_cols=59 Identities=12% Similarity=0.037 Sum_probs=43.5
Q ss_pred CCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcc
Q 013319 330 RLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEK 393 (445)
Q Consensus 330 ~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~ 393 (445)
+.++||.|+..+. ..+.+..||..|. .++|+.+++. ..+.+|+|..+|||++|+++...
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad----~~~~~~~i~~lPTlliyk~G~~v 165 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIIST----QCIPNYPDKNLPTILVYRNGDIV 165 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhH----HhHhhCCCCCCCEEEEEECCEEE
Confidence 3567787876543 2678999999986 5889666532 24689999999999988876543
No 313
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=95.14 E-value=0.24 Score=40.13 Aligned_cols=93 Identities=14% Similarity=0.238 Sum_probs=62.7
Q ss_pred ChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEeccCC
Q 013319 205 NLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYSYKA 283 (445)
Q Consensus 205 t~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~~~ 283 (445)
+.++.++.+ ..+++.+|-|+..--. . ...|.++|..+...+.|+... ...+.+.+++ . |++++|....
T Consensus 7 s~~~l~~f~-~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~--~~ivl~~p~~ 75 (104)
T cd03069 7 TEAEFEKFL-SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--G--EGVVLFRPPR 75 (104)
T ss_pred CHHHHHHHh-ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--C--CceEEEechh
Confidence 445565544 4556677777755322 4 789999999998778887654 4567788888 5 8888882210
Q ss_pred ---CCCCCeeeecCcccHHHHHHHHHhh
Q 013319 284 ---GDKGSLVEYNEHLVAKNLKSFCRDH 308 (445)
Q Consensus 284 ---~~~g~~~~y~g~~~~~~l~~fi~~~ 308 (445)
.-......|.|..+.+.|.+||..+
T Consensus 76 ~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 76 LSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hhcccCcccccccCcCCHHHHHHHHHhh
Confidence 0112335699988889999999754
No 314
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=95.13 E-value=0.083 Score=44.11 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=46.7
Q ss_pred CCCCEEEEEec-------CCC-----ChHHHHHHHHHhhccceEEEEeecC------CChHHHHHcCCC-CCCeEEEEcc
Q 013319 329 ARLPSVLLLST-------KKE-----TPIIWRVLSGMYHERLNFYDTEVHD------VSDPAVKKLGVD-ALPAIVGWLS 389 (445)
Q Consensus 329 ~~~~~vvlF~~-------~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~------~~~~l~~~f~V~-~~Ptlv~~~~ 389 (445)
.+.+++|.|+. ... .-+.+.+++..+.+.+.|+.+.+.. .+.++.++++|. ..||+++|..
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~ 99 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKT 99 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcC
Confidence 35688888877 332 2578888999998778898777653 246899999998 9999997743
No 315
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=95.06 E-value=0.12 Score=44.94 Aligned_cols=41 Identities=10% Similarity=0.028 Sum_probs=33.5
Q ss_pred CcEEEEEEECCCCccCCC-hhHHHHHHHHh--cCccEEEEEeCc
Q 013319 217 GMTWLLFFYSPSSNRDGY-ESVIEEVANSM--EGALKVGSINCE 257 (445)
Q Consensus 217 ~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l--~~~v~~~~Vdc~ 257 (445)
..+.|++|+.+.|++|.. .+...++.+++ .+.|.+.-++..
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence 357899999999999999 89998998988 677888777663
No 316
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.04 E-value=0.048 Score=42.65 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=43.0
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccc--------------------------------hhhHhHhC
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETE--------------------------------ASLCKELG 267 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~--------------------------------~~lc~~~~ 267 (445)
++.|+.+.|++|.. .+..+++.....+.+.+..+.+.-. ..+..+.|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 46899999999999 9999999866666666655543211 23566789
Q ss_pred CccCCCcEEEEe
Q 013319 268 VHRPRSPRIFAY 279 (445)
Q Consensus 268 I~~~~~Pti~~f 279 (445)
|.+. |++++.
T Consensus 81 ~~g~--Pt~v~~ 90 (98)
T cd02972 81 VTGT--PTFVVN 90 (98)
T ss_pred CCCC--CEEEEC
Confidence 9999 999985
No 317
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=95.01 E-value=0.26 Score=43.59 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=53.0
Q ss_pred CCCEEEEEecCCCC-----hHHHHHHHHHhhcc-ceEEEEeec---------------------CCChHHHHHcCCCCCC
Q 013319 330 RLPSVLLLSTKKET-----PIIWRVLSGMYHER-LNFYDTEVH---------------------DVSDPAVKKLGVDALP 382 (445)
Q Consensus 330 ~~~~vvlF~~~~~~-----~~~~~~lA~~~~~~-~~f~~~~v~---------------------~~~~~l~~~f~V~~~P 382 (445)
.++++|.|...... .+.+..++.++.+. +.++.+..+ +.+..+++.|+|..+|
T Consensus 61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 140 (173)
T PRK03147 61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLP 140 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcC
Confidence 45677777643321 34556666666543 555444332 1346788999999999
Q ss_pred eEEEEccCCccc-ccccccChhhHHHHHHHH
Q 013319 383 AIVGWLSNGEKD-VLKTGISVKDQKSSIHEL 412 (445)
Q Consensus 383 tlv~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 412 (445)
+++++.++++.. .+.+..+.+++.+.+.++
T Consensus 141 ~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 141 TTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred eEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 999898877644 556666777776665544
No 318
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=94.95 E-value=0.075 Score=57.58 Aligned_cols=9 Identities=33% Similarity=0.368 Sum_probs=5.2
Q ss_pred HHHHHHhhh
Q 013319 85 EEKRKNYDL 93 (445)
Q Consensus 85 ~~~r~~yd~ 93 (445)
|-++..||.
T Consensus 1165 PPKmaryDn 1173 (1282)
T KOG0921|consen 1165 PPKMARYDN 1173 (1282)
T ss_pred CcccccccC
Confidence 455666664
No 319
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=94.89 E-value=0.42 Score=38.51 Aligned_cols=96 Identities=14% Similarity=0.159 Sum_probs=64.7
Q ss_pred cccc-ChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEE
Q 013319 201 IRAL-NLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 201 V~~L-t~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~ 278 (445)
|..| +.++.+..+...+.+.+|-|+..--. . ...|.++|..+...+.|+... ...+.+.+++. . |++++
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~--~~i~l 72 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-M--NEVDF 72 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-C--CcEEE
Confidence 3445 45557665531566677777654222 4 679999999998878886654 45667777765 4 99999
Q ss_pred eccCCCCCCCeeee-cCcccHHHHHHHHHhh
Q 013319 279 YSYKAGDKGSLVEY-NEHLVAKNLKSFCRDH 308 (445)
Q Consensus 279 f~~~~~~~g~~~~y-~g~~~~~~l~~fi~~~ 308 (445)
+++. ......| .|..+.+.|.+||...
T Consensus 73 ~~~~---~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 73 YEPF---MEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred eCCC---CCCCcccCCCCCCHHHHHHHHHHh
Confidence 9542 1234568 7788889999999753
No 320
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=94.88 E-value=0.039 Score=41.44 Aligned_cols=50 Identities=16% Similarity=0.269 Sum_probs=36.9
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHh---CCccCCCcEEEE
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKEL---GVHRPRSPRIFA 278 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~---~I~~~~~Pti~~ 278 (445)
++.|..++|++|+. ...+++ ..+.+-.+|+++++....++ |...+ |++++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g~~~v--P~v~~ 54 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQGFRQV--PVIVA 54 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCccc--CEEEE
Confidence 35688899999999 555542 25778888998887655544 77788 99876
No 321
>PRK13191 putative peroxiredoxin; Provisional
Probab=94.86 E-value=0.16 Score=47.06 Aligned_cols=40 Identities=3% Similarity=-0.130 Sum_probs=33.5
Q ss_pred EEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCcc
Q 013319 219 TWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCET 258 (445)
Q Consensus 219 ~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~ 258 (445)
++|+.|.++||+.|.. .+.+.+++.+++. .+.+..|+++.
T Consensus 36 vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds 77 (215)
T PRK13191 36 FVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDS 77 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3445778999999999 9999999999975 68888888874
No 322
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=94.80 E-value=0.055 Score=41.81 Aligned_cols=79 Identities=15% Similarity=0.298 Sum_probs=55.2
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEeccCCCCCCCeeeecCcccHH
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYSYKAGDKGSLVEYNEHLVAK 299 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g~~~~~ 299 (445)
|+.|..|.|.-|.. ....++++... .+.+-.||.++++.+-.+|+. .+ |.+.+=.... ........+..+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~l~~~Y~~-~I--PVl~~~~~~~--~~~~~~~~~~~d~~ 74 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPELFEKYGY-RI--PVLHIDGIRQ--FKEQEELKWRFDEE 74 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHHHHHHSCT-ST--SEEEETT-GG--GCTSEEEESSB-HH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHHHHHHhcC-CC--CEEEEcCccc--ccccceeCCCCCHH
Confidence 78899999999988 76666654433 589999999999999999996 56 9877631000 00134455677889
Q ss_pred HHHHHHH
Q 013319 300 NLKSFCR 306 (445)
Q Consensus 300 ~l~~fi~ 306 (445)
.|.+|++
T Consensus 75 ~L~~~L~ 81 (81)
T PF05768_consen 75 QLRAWLE 81 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9998874
No 323
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=94.79 E-value=0.061 Score=43.89 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=45.1
Q ss_pred cCCCCEEEEEecCCCC--hHHHHHHH------HHhhccceEEEEeecCC-------------------ChHHHHHcCCCC
Q 013319 328 KARLPSVLLLSTKKET--PIIWRVLS------GMYHERLNFYDTEVHDV-------------------SDPAVKKLGVDA 380 (445)
Q Consensus 328 ~~~~~~vvlF~~~~~~--~~~~~~lA------~~~~~~~~f~~~~v~~~-------------------~~~l~~~f~V~~ 380 (445)
...++.+++|++..-+ ..+.+.+. ..++.++.++.+.+.+. +.++++.++|.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 3466788888765432 22333332 33444455555555431 135899999999
Q ss_pred CCeEEEEccCCc-ccccccccChhhHHH
Q 013319 381 LPAIVGWLSNGE-KDVLKTGISVKDQKS 407 (445)
Q Consensus 381 ~Ptlv~~~~~~~-~~~~~~~~~~~~~~~ 407 (445)
+||++++..+++ ...+.|-.+.+++..
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~ 110 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLK 110 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHh
Confidence 999998876655 445667677766654
No 324
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=94.77 E-value=0.24 Score=41.52 Aligned_cols=79 Identities=8% Similarity=0.086 Sum_probs=49.7
Q ss_pred cCCCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCC----------hHHHHHcCCC----CCCeEEEEc
Q 013319 328 KARLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVS----------DPAVKKLGVD----ALPAIVGWL 388 (445)
Q Consensus 328 ~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~----------~~l~~~f~V~----~~Ptlv~~~ 388 (445)
......+|+|+..+. ..|.+..++.+.+ +.|..++++... .++.++|++. +.||+++|.
T Consensus 21 ~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~--~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k 98 (122)
T TIGR01295 21 DKKETATFFIGRKTCPYCRKFSGTLSGVVAQTK--APIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHIT 98 (122)
T ss_pred HcCCcEEEEEECCCChhHHHHhHHHHHHHHhcC--CcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEe
Confidence 445566777765543 3678888888743 555556655211 2456777655 499999888
Q ss_pred cCCccccccccc-ChhhHHHH
Q 013319 389 SNGEKDVLKTGI-SVKDQKSS 408 (445)
Q Consensus 389 ~~~~~~~~~~~~-~~~~~~~~ 408 (445)
.++......++. +.+++..+
T Consensus 99 ~Gk~v~~~~G~~~~~~~l~~~ 119 (122)
T TIGR01295 99 DGKQVSVRCGSSTTAQELQDI 119 (122)
T ss_pred CCeEEEEEeCCCCCHHHHHHH
Confidence 887777776644 34555443
No 325
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.12 Score=48.04 Aligned_cols=86 Identities=14% Similarity=0.185 Sum_probs=61.3
Q ss_pred hhccCCCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccc
Q 013319 325 FDAKARLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTG 399 (445)
Q Consensus 325 ~~~~~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~ 399 (445)
+.....+.++|-|+..+. ..++|..||.+|.+ ..|..+.|+ ..+..+..+||+..||.++|.+...++.+.+
T Consensus 16 ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd-~c~~taa~~gV~amPTFiff~ng~kid~~qG- 92 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVD-ECRGTAATNGVNAMPTFIFFRNGVKIDQIQG- 92 (288)
T ss_pred hhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHH-HhhchhhhcCcccCceEEEEecCeEeeeecC-
Confidence 334555678888886543 58999999999964 457666655 5577889999999999998887777777744
Q ss_pred cChhhHHHHHHHHH
Q 013319 400 ISVKDQKSSIHELS 413 (445)
Q Consensus 400 ~~~~~~~~~~~~~~ 413 (445)
-+...+++.+..+.
T Consensus 93 Ad~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 93 ADASGLEEKVAKYA 106 (288)
T ss_pred CCHHHHHHHHHHHh
Confidence 45555555555443
No 326
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=94.66 E-value=0.062 Score=55.31 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=26.4
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCh
Q 013319 35 VLGVERNASQREIQKAFHKLSLQYHPDKNKNK 66 (445)
Q Consensus 35 vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~ 66 (445)
=+++..=.+.++||++|||.++..||||.+..
T Consensus 393 pVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~ 424 (453)
T KOG0431|consen 393 PVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQK 424 (453)
T ss_pred cCchhhccCHHHHHHHHHhhhheeCcccccCC
Confidence 34555557999999999999999999997753
No 327
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=94.64 E-value=0.28 Score=40.64 Aligned_cols=95 Identities=11% Similarity=0.140 Sum_probs=53.2
Q ss_pred cccccchhhhccCCCCEEEEEec---CCCChHHHHHHHHHh---hccceEEEEeecC----CChHHHHHcCCCC--CCeE
Q 013319 317 SLNRIEFTFDAKARLPSVLLLST---KKETPIIWRVLSGMY---HERLNFYDTEVHD----VSDPAVKKLGVDA--LPAI 384 (445)
Q Consensus 317 ~~~~~~~~~~~~~~~~~vvlF~~---~~~~~~~~~~lA~~~---~~~~~f~~~~v~~----~~~~l~~~f~V~~--~Ptl 384 (445)
++++..|.......+..+|-|-- -..-...|.++|.+- .+.+-++.+-+.+ .|.+|+++|+|.. ||.+
T Consensus 8 ~LD~~tFdKvi~kf~~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~ 87 (126)
T PF07912_consen 8 PLDELTFDKVIPKFKYVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVI 87 (126)
T ss_dssp EESTTHHHHHGGGSSEEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEE
T ss_pred eccceehhheeccCceEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEE
Confidence 44444544333333444555532 122367899999443 2334455555555 7889999999954 9999
Q ss_pred EEEccCCc-cccc--ccccChhhHHHHHHH
Q 013319 385 VGWLSNGE-KDVL--KTGISVKDQKSSIHE 411 (445)
Q Consensus 385 v~~~~~~~-~~~~--~~~~~~~~~~~~~~~ 411 (445)
++|..+.+ +..| .+..+.+.|+.|++.
T Consensus 88 ~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~ 117 (126)
T PF07912_consen 88 YLFVGDKEEPVRYPFDGDVTADNLQRFVKS 117 (126)
T ss_dssp EEEESSTTSEEEE-TCS-S-HHHHHHHHHH
T ss_pred EEecCCCCCCccCCccCCccHHHHHHHHHh
Confidence 99996554 4445 555666666555543
No 328
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=94.62 E-value=0.068 Score=40.19 Aligned_cols=50 Identities=18% Similarity=0.180 Sum_probs=36.6
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchh----hHhHhCCccCCCcEEEE
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEAS----LCKELGVHRPRSPRIFA 278 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~----lc~~~~I~~~~~Pti~~ 278 (445)
++.|+.+||++|+. ...+++ ..+.+-.+|+.+++. +.+..+-..+ |+|++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~------~gi~~~~~di~~~~~~~~el~~~~g~~~v--P~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE------KGLPYVEINIDIFPERKAELEERTGSSVV--PQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHHhCCCCc--CEEEE
Confidence 67899999999999 555553 257788889988764 4444566777 98866
No 329
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.034 Score=49.76 Aligned_cols=63 Identities=30% Similarity=0.485 Sum_probs=49.8
Q ss_pred CcccccCCCCCC--CHHHHHHHHHHHHHhhCCCCCCCh------HHHHHHHHHHHHHHHcCCHHHHHHhhh
Q 013319 31 DLYKVLGVERNA--SQREIQKAFHKLSLQYHPDKNKNK------AAQEKFAEINNAYDILSDEEKRKNYDL 93 (445)
Q Consensus 31 d~y~vLgv~~~a--~~~~ik~ayr~l~~~~hPd~~~~~------~~~~~f~~i~~Ay~~L~d~~~r~~yd~ 93 (445)
|+...++..+.+ ..+.++..|+.+.+.+|||+.... .+.+.+..++.||.+|.||.+|..|=.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 345555666543 456789999999999999997642 245678999999999999999999975
No 330
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=94.47 E-value=0.073 Score=40.03 Aligned_cols=50 Identities=14% Similarity=0.309 Sum_probs=35.4
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHh----HhCCc-cCCCcEEEE
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCK----ELGVH-RPRSPRIFA 278 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~----~~~I~-~~~~Pti~~ 278 (445)
++.|..+||++|+. ...+++ ..+.+-.+|++.+++..+ ..+.. .+ |+|++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~------~~i~~~~i~i~~~~~~~~~~~~~~~~~~~v--P~v~i 57 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK------KGVDYEEIDVDGDPALREEMINRSGGRRTV--PQIFI 57 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH------CCCcEEEEECCCCHHHHHHHHHHhCCCCcc--CEEEE
Confidence 57888999999999 655553 246777888887654433 34655 77 98866
No 331
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=94.37 E-value=0.052 Score=41.44 Aligned_cols=50 Identities=14% Similarity=0.289 Sum_probs=35.3
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhH----hHhCCccCCCcEEEE
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLC----KELGVHRPRSPRIFA 278 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc----~~~~I~~~~~Pti~~ 278 (445)
++.|..+||++|.. ...+++. .+.+-.+|++.++... +..+...+ |+|++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~v--P~i~i 55 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTV--PQIFI 55 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCc--CEEEE
Confidence 46788999999999 7666642 3566677777765443 33467778 99866
No 332
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=94.11 E-value=0.2 Score=41.68 Aligned_cols=66 Identities=17% Similarity=0.208 Sum_probs=43.3
Q ss_pred ccCCCCEEEEEecCCCC-----hHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCC--CCeEEEEccCCc
Q 013319 327 AKARLPSVLLLSTKKET-----PIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDA--LPAIVGWLSNGE 392 (445)
Q Consensus 327 ~~~~~~~vvlF~~~~~~-----~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~--~Ptlv~~~~~~~ 392 (445)
...++|++|.|+..... -+.+..++........|+.+.++.....+...|++.+ +||++++.++++
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGD 88 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCC
Confidence 45677889988765432 2345555444333446766766654445678899987 999998887654
No 333
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=93.96 E-value=0.29 Score=47.76 Aligned_cols=71 Identities=15% Similarity=-0.018 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhccceEEEEeecC-CChHHHHHcCCCCCCeEEEEccCCcccccccccChhhHHHHHHHHHhhh
Q 013319 345 IIWRVLSGMYHERLNFYDTEVHD-VSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGISVKDQKSSIHELSKLL 416 (445)
Q Consensus 345 ~~~~~lA~~~~~~~~f~~~~v~~-~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 416 (445)
.....||.....+-.++++.|+. .+..+++++|+...++|.+|+.+..+ -|.|.++.+.++.|+.++...-
T Consensus 76 E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E~~SiyVfkd~~~I-EydG~~saDtLVeFl~dl~edP 147 (383)
T PF01216_consen 76 ELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEEEGSIYVFKDGEVI-EYDGERSADTLVEFLLDLLEDP 147 (383)
T ss_dssp HHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--STTEEEEEETTEEE-EE-S--SHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccccCcEEEEECCcEE-EecCccCHHHHHHHHHHhcccc
Confidence 33555666554444455565665 77899999999999999987766555 4568888889988887776533
No 334
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=93.94 E-value=0.2 Score=41.98 Aligned_cols=71 Identities=6% Similarity=0.052 Sum_probs=57.3
Q ss_pred hhhHHHHhhcC-CcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcE-EEEe
Q 013319 206 LQVFKKEIVEK-GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPR-IFAY 279 (445)
Q Consensus 206 ~~~f~~~v~~~-~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pt-i~~f 279 (445)
....++.|+.. +++++|-|-.+|.+.|.. ..+..++|++++....++.||.++-+.+.+-|.+. - |. +++|
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-d--P~tvmFF 81 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-D--PCTVMFF 81 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--S--SEEEEEE
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-C--CeEEEEE
Confidence 34455666554 568999999999999999 99999999999999999999999999999999998 4 65 4444
No 335
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=93.94 E-value=0.029 Score=53.65 Aligned_cols=86 Identities=13% Similarity=0.193 Sum_probs=67.6
Q ss_pred CcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEe-CccchhhHhHhCCccCCCcEEEEeccCCCCCCCeeeecC
Q 013319 217 GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSIN-CETEASLCKELGVHRPRSPRIFAYSYKAGDKGSLVEYNE 294 (445)
Q Consensus 217 ~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vd-c~~~~~lc~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g 294 (445)
..++-+.||+.||+..+. .|.+.-....+.. +....|+ -...+.+..++++.+. |++.+. ...-+..|.|
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~~--ps~~~~-----n~t~~~~~~~ 147 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHSE--PSNLML-----NQTCPASYRG 147 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhccccccC--Ccceee-----ccccchhhcc
Confidence 446788999999999999 9999987777653 3333332 3345778899999999 999987 3334678999
Q ss_pred cccHHHHHHHHHhhCC
Q 013319 295 HLVAKNLKSFCRDHLP 310 (445)
Q Consensus 295 ~~~~~~l~~fi~~~lp 310 (445)
.++..+|++|..+.+|
T Consensus 148 ~r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 148 ERDLASLVNFYTEITP 163 (319)
T ss_pred cccHHHHHHHHHhhcc
Confidence 9999999999998887
No 336
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=93.79 E-value=0.4 Score=45.58 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=30.4
Q ss_pred hhHhHhCCccCCCcEEEEeccCCCCCCCeeeecCcccHHHHHHHHH
Q 013319 261 SLCKELGVHRPRSPRIFAYSYKAGDKGSLVEYNEHLVAKNLKSFCR 306 (445)
Q Consensus 261 ~lc~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g~~~~~~l~~fi~ 306 (445)
.+.+++||++. |+|++-. .+|.+....|....++|.+.+.
T Consensus 210 ~l~~~lGv~GT--Paiv~~d----~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 210 KLMDDLGANAT--PAIYYMD----KDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred HHHHHcCCCCC--CEEEEEC----CCCCEEEecCCCCHHHHHHHhC
Confidence 46777999999 9999862 2466667788888888887764
No 337
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=93.74 E-value=0.07 Score=42.99 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=33.7
Q ss_pred EEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchh-------hHhHhCCccCCCcEEEE
Q 013319 220 WLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEAS-------LCKELGVHRPRSPRIFA 278 (445)
Q Consensus 220 ~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~-------lc~~~~I~~~~~Pti~~ 278 (445)
-++.|..|||++|++ ...+++. .+.+-.+|+++++. +.+..|...+ |.|++
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tv--P~Vfi 67 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPAV--PAVFV 67 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCc--CeEEE
Confidence 378899999999998 6555433 35555677765532 2223356788 99865
No 338
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=93.64 E-value=1 Score=36.72 Aligned_cols=94 Identities=14% Similarity=0.186 Sum_probs=60.8
Q ss_pred ChhhHHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEeccCC
Q 013319 205 NLQVFKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYSYKA 283 (445)
Q Consensus 205 t~~~f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~~~ 283 (445)
+.++.+..+...+.+.+|-|+..--. . ...|.++|..+...+.|+... ...+.+++++.. |.+++|....
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~~---~~vvl~rp~~ 77 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVSP---GQLVVFQPEK 77 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCCC---CceEEECcHH
Confidence 44556665544436677777765322 4 778999999998888886654 356777887764 6677772111
Q ss_pred C---CCCCeeeecCc-ccHHH-HHHHHHh
Q 013319 284 G---DKGSLVEYNEH-LVAKN-LKSFCRD 307 (445)
Q Consensus 284 ~---~~g~~~~y~g~-~~~~~-l~~fi~~ 307 (445)
- -......|.|. .+.++ |..|+..
T Consensus 78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 78 FQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred HhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 1 12345668877 56655 9999975
No 339
>PRK10329 glutaredoxin-like protein; Provisional
Probab=93.58 E-value=0.14 Score=39.65 Aligned_cols=69 Identities=9% Similarity=0.158 Sum_probs=45.9
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhH---hHhCCccCCCcEEEEeccCCCCCCCeeeecCcc
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLC---KELGVHRPRSPRIFAYSYKAGDKGSLVEYNEHL 296 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc---~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g~~ 296 (445)
++.|..+||++|+. ...+++ ..|.+-.+|++++++.. +..|...+ |++++= +. ... ..
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~v--Pvv~i~-------~~--~~~-Gf 64 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQL--PVVIAG-------DL--SWS-GF 64 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCc--CEEEEC-------CE--EEe-cC
Confidence 67888999999998 555532 25788889998876543 34566788 998761 21 222 33
Q ss_pred cHHHHHHHHHh
Q 013319 297 VAKNLKSFCRD 307 (445)
Q Consensus 297 ~~~~l~~fi~~ 307 (445)
+.+.|.+.+..
T Consensus 65 ~~~~l~~~~~~ 75 (81)
T PRK10329 65 RPDMINRLHPA 75 (81)
T ss_pred CHHHHHHHHHh
Confidence 66777776654
No 340
>PTZ00062 glutaredoxin; Provisional
Probab=93.45 E-value=0.6 Score=42.84 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=56.3
Q ss_pred CCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccChhhH
Q 013319 331 LPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGISVKDQ 405 (445)
Q Consensus 331 ~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~~~~ 405 (445)
...|++|+..+. .-+.+.+|+.+|. .+.|+.++. + |+|...||+++|..++....+.+ -+..++
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~--d-------~~V~~vPtfv~~~~g~~i~r~~G-~~~~~~ 86 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNL--A-------DANNEYGVFEFYQNSQLINSLEG-CNTSTL 86 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEcc--c-------cCcccceEEEEEECCEEEeeeeC-CCHHHH
Confidence 456778865543 3678899999884 588865531 1 99999999998887776666643 345566
Q ss_pred HHHHHH---------HHhhhhhhhhccc
Q 013319 406 KSSIHE---------LSKLLDGLKKRTK 424 (445)
Q Consensus 406 ~~~~~~---------~~~~l~~~~~~n~ 424 (445)
.+.+.. +.+.++..++.++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~li~~~~ 114 (204)
T PTZ00062 87 VSFIRGWAQKGSSEDTVEKIERLIRNHK 114 (204)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCC
Confidence 555444 4556677666655
No 341
>PHA03050 glutaredoxin; Provisional
Probab=93.34 E-value=0.11 Score=42.64 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=39.0
Q ss_pred HHHHhhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCcc---ch----hhHhHhCCccCCCcEEEE
Q 013319 209 FKKEIVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCET---EA----SLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 209 f~~~v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~---~~----~lc~~~~I~~~~~Pti~~ 278 (445)
|-+.+.+++ -++.|..+|||+|++ ...+++...+.. .+-.+|+++ .. .+-+.-|...+ |+|++
T Consensus 5 ~v~~~i~~~--~V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tV--P~IfI 75 (108)
T PHA03050 5 FVQQRLANN--KVTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTV--PRIFF 75 (108)
T ss_pred HHHHHhccC--CEEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCc--CEEEE
Confidence 333344444 378899999999998 766665432211 355566664 22 34444577788 99976
No 342
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=93.24 E-value=0.16 Score=45.48 Aligned_cols=102 Identities=12% Similarity=0.143 Sum_probs=68.6
Q ss_pred ccccChhhHHHHhhcCCc-E-EEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEE
Q 013319 201 IRALNLQVFKKEIVEKGM-T-WLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIF 277 (445)
Q Consensus 201 V~~Lt~~~f~~~v~~~~~-~-~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~ 277 (445)
|..++..+|.++|.+.+. + ++|..|...-+.|+- .-.+..+|..+. .++|+++=.+.. ...|.=... |||+
T Consensus 93 V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp-~iKFVki~at~c---IpNYPe~nl--PTl~ 166 (240)
T KOG3170|consen 93 VFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP-QIKFVKIPATTC---IPNYPESNL--PTLL 166 (240)
T ss_pred eeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC-cceEEecccccc---cCCCcccCC--CeEE
Confidence 788999999888877654 4 466789999999999 999999999985 466666533221 112443455 9999
Q ss_pred EeccCCCCCCCee---eecCcc-cHHHHHHHHHhhC
Q 013319 278 AYSYKAGDKGSLV---EYNEHL-VAKNLKSFCRDHL 309 (445)
Q Consensus 278 ~f~~~~~~~g~~~---~y~g~~-~~~~l~~fi~~~l 309 (445)
+|..|... ++.+ .+-|.. +.+++..++-+.-
T Consensus 167 VY~~G~lk-~q~igll~lgG~n~t~ed~e~~L~qag 201 (240)
T KOG3170|consen 167 VYHHGALK-KQMIGLLELGGMNLTMEDVEDFLVQAG 201 (240)
T ss_pred EeecchHH-hheehhhhhcCCcCCHHHHHHHHHhcc
Confidence 99555432 2222 244443 5577777776543
No 343
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=93.09 E-value=0.93 Score=37.19 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=50.8
Q ss_pred ccCCCCEEEEEecCCCC-hHHH-------HHHHHHhhccceEEEEeecC-CChHHHHHcCCCCCCeEEEEcc-CCc-ccc
Q 013319 327 AKARLPSVLLLSTKKET-PIIW-------RVLSGMYHERLNFYDTEVHD-VSDPAVKKLGVDALPAIVGWLS-NGE-KDV 395 (445)
Q Consensus 327 ~~~~~~~vvlF~~~~~~-~~~~-------~~lA~~~~~~~~f~~~~v~~-~~~~l~~~f~V~~~Ptlv~~~~-~~~-~~~ 395 (445)
...+++.+|+|+..... ...+ ..+...+..+..+..+.+.. +...++..|++.++|+++++.+ +++ ...
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEE
Confidence 45567888888765542 1111 22333344444443444433 3457899999999999999987 554 445
Q ss_pred cccccChhhHHHHHH
Q 013319 396 LKTGISVKDQKSSIH 410 (445)
Q Consensus 396 ~~~~~~~~~~~~~~~ 410 (445)
+.+..+++++.+.+.
T Consensus 94 ~~G~~~~~~f~~~L~ 108 (114)
T cd02958 94 WSGNITPEDLLSQLI 108 (114)
T ss_pred EcCCCCHHHHHHHHH
Confidence 667777766644433
No 344
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=92.95 E-value=0.18 Score=42.36 Aligned_cols=54 Identities=26% Similarity=0.299 Sum_probs=38.2
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHH
Q 013319 31 DLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEK 87 (445)
Q Consensus 31 d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~ 87 (445)
....||+|++..+.++|.+.|.+|-...+|++..+.. .-.+|..|.+.|..+.+
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfY---LQSKV~rAKErl~~El~ 112 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFY---LQSKVFRAKERLEQELK 112 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHH---HHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999987644 34457778887765543
No 345
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=92.81 E-value=0.52 Score=50.38 Aligned_cols=83 Identities=12% Similarity=0.112 Sum_probs=53.0
Q ss_pred cCCCCEEEEEecCCCC------hHHH--HHHHHHhhccceEEEEeecC---CChHHHHHcCCCCCCeEEEEccCCcc---
Q 013319 328 KARLPSVLLLSTKKET------PIIW--RVLSGMYHERLNFYDTEVHD---VSDPAVKKLGVDALPAIVGWLSNGEK--- 393 (445)
Q Consensus 328 ~~~~~~vvlF~~~~~~------~~~~--~~lA~~~~~~~~f~~~~v~~---~~~~l~~~f~V~~~Ptlv~~~~~~~~--- 393 (445)
..+++++|.|+..... +..+ .++...++ .+.++.+++++ ++.+++++|+|.++||+++|.++++.
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~ 550 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPD 550 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCccc
Confidence 3467899999865432 1111 34444554 35665555543 24689999999999999988876654
Q ss_pred cccccccChhhHHHHHHH
Q 013319 394 DVLKTGISVKDQKSSIHE 411 (445)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~ 411 (445)
..+.+..+.+++.+.+++
T Consensus 551 ~r~~G~~~~~~f~~~L~~ 568 (571)
T PRK00293 551 ARVTGFMDAAAFAAHLRQ 568 (571)
T ss_pred ccccCCCCHHHHHHHHHH
Confidence 344555677776655554
No 346
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=92.60 E-value=0.19 Score=43.21 Aligned_cols=38 Identities=11% Similarity=0.063 Sum_probs=29.8
Q ss_pred CcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEe
Q 013319 217 GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSIN 255 (445)
Q Consensus 217 ~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vd 255 (445)
..+.+++|+.++|++|+. .|.++++...+ +.+.+..++
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~ 43 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKED-PDVRVVFKE 43 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHC-CCceEEEEe
Confidence 457899999999999999 99999987766 345554443
No 347
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=92.49 E-value=0.2 Score=38.64 Aligned_cols=50 Identities=14% Similarity=0.332 Sum_probs=35.1
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccch-----hhHhHh-CCccCCCcEEEE
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEA-----SLCKEL-GVHRPRSPRIFA 278 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~-----~lc~~~-~I~~~~~Pti~~ 278 (445)
++.|..++|++|++ ...+. ...+.+-.|+.+.+. +..++. |.+.+ |+|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~------~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tv--P~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD------RKGVDYEEIDVDDDEPEEAREMVKRGKGQRTV--PQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHH------HcCCCcEEEEecCCcHHHHHHHHHHhCCCCCc--CEEEE
Confidence 67788999999998 54444 235667777766654 334444 67888 99988
No 348
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=92.47 E-value=1.1 Score=43.12 Aligned_cols=81 Identities=10% Similarity=0.101 Sum_probs=52.3
Q ss_pred CCCEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCC----------ChHHHHHcCCCCCCeEEEEccC-Ccc
Q 013319 330 RLPSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDV----------SDPAVKKLGVDALPAIVGWLSN-GEK 393 (445)
Q Consensus 330 ~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~----------~~~l~~~f~V~~~Ptlv~~~~~-~~~ 393 (445)
.++.+|+|+.... ..+.+..++.++. +.+..++++.. +..++++|+|..+|+++++.++ +..
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence 4567777765432 2578888888875 44444444431 3578999999999999999884 444
Q ss_pred c-ccccccChhhHHHHHHHH
Q 013319 394 D-VLKTGISVKDQKSSIHEL 412 (445)
Q Consensus 394 ~-~~~~~~~~~~~~~~~~~~ 412 (445)
. +..+..+.++|...+...
T Consensus 244 ~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 244 TPIGFGVMSADELVDRILLA 263 (271)
T ss_pred EEEEeCCCCHHHHHHHHHHH
Confidence 3 333445666665544433
No 349
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=92.32 E-value=0.22 Score=37.21 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=34.8
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchh---hHhHhCCccCCCcEEEE
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEAS---LCKELGVHRPRSPRIFA 278 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~---lc~~~~I~~~~~Pti~~ 278 (445)
++.|..+||+.|.. ...+++ ..+.+-.+|++++.. +-...+...+ |.|++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~------~~i~~~~~~v~~~~~~~~~~~~~g~~~v--P~ifi 56 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE------NGISYEEIPLGKDITGRSLRAVTGAMTV--PQVFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH------cCCCcEEEECCCChhHHHHHHHhCCCCc--CeEEE
Confidence 68899999999998 555542 246677778776542 2233477888 99865
No 350
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=92.03 E-value=0.93 Score=33.05 Aligned_cols=52 Identities=12% Similarity=0.081 Sum_probs=33.5
Q ss_pred EEEEEecCCCC-----hHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEE
Q 013319 333 SVLLLSTKKET-----PIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVG 386 (445)
Q Consensus 333 ~vvlF~~~~~~-----~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~ 386 (445)
.+.+|+...-. .+.+..++... ..+.|..+++. ++++++++++|...|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~-~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAA-EFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcc-cCHhHHHHcCCcccCEEEE
Confidence 35566554322 34555565443 35677555544 5688999999999999974
No 351
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=91.55 E-value=0.97 Score=35.42 Aligned_cols=58 Identities=19% Similarity=0.379 Sum_probs=33.9
Q ss_pred CEEEEEecCCCChHHHHHHHHHhhccceEEEEeecC-CChHHHHHcCCCCCCeEEEEccCCc
Q 013319 332 PSVLLLSTKKETPIIWRVLSGMYHERLNFYDTEVHD-VSDPAVKKLGVDALPAIVGWLSNGE 392 (445)
Q Consensus 332 ~~vvlF~~~~~~~~~~~~lA~~~~~~~~f~~~~v~~-~~~~l~~~f~V~~~Ptlv~~~~~~~ 392 (445)
..+|..+.. .....|++....+.. .+..+.+.+ ....+.+.|+|..+|+++++.++++
T Consensus 36 v~~v~Vs~d-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~i~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 36 VEFVFVSLD-EDEEEWKKFLKKNNF--PWYNVPFDDDNNSELLKKYGINGIPTLVLLDPDGK 94 (95)
T ss_dssp EEEEEEE-S-SSHHHHHHHHHTCTT--SSEEEETTTHHHHHHHHHTT-TSSSEEEEEETTSB
T ss_pred EEEEEEEeC-CCHHHHHHHHHhcCC--CceEEeeCcchHHHHHHHCCCCcCCEEEEECCCCC
Confidence 334443433 455666666555522 222232332 3467999999999999998887764
No 352
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=91.35 E-value=1.7 Score=36.53 Aligned_cols=88 Identities=9% Similarity=0.037 Sum_probs=47.5
Q ss_pred hccCCCCEEEEEecCCCC-hHHH-------HHHHHHhhccceEEEEeecCCChHHHH--------HcCCCCCCeEEEEcc
Q 013319 326 DAKARLPSVLLLSTKKET-PIIW-------RVLSGMYHERLNFYDTEVHDVSDPAVK--------KLGVDALPAIVGWLS 389 (445)
Q Consensus 326 ~~~~~~~~vvlF~~~~~~-~~~~-------~~lA~~~~~~~~f~~~~v~~~~~~l~~--------~f~V~~~Ptlv~~~~ 389 (445)
....++|++|.|+..... ...+ ..++..+.....++.+++. .++++++ .|++.++|+++++.+
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~-~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~ 89 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDRE-ERPDVDKIYMNAAQAMTGQGGWPLNVFLTP 89 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCC-cCcHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 356778888888665432 1111 1233334444444444433 3455544 368999999999988
Q ss_pred CCcccc----cccc--cChhhHHHHHHHHHh
Q 013319 390 NGEKDV----LKTG--ISVKDQKSSIHELSK 414 (445)
Q Consensus 390 ~~~~~~----~~~~--~~~~~~~~~~~~~~~ 414 (445)
+++... +... .+...++..++.+++
T Consensus 90 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (124)
T cd02955 90 DLKPFFGGTYFPPEDRYGRPGFKTVLEKIRE 120 (124)
T ss_pred CCCEEeeeeecCCCCcCCCcCHHHHHHHHHH
Confidence 775432 2111 222455555555543
No 353
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=91.20 E-value=0.29 Score=43.39 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=32.9
Q ss_pred CCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEe
Q 013319 216 KGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSIN 255 (445)
Q Consensus 216 ~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vd 255 (445)
...+.|+.|+.+.|++|+. .+.+.++.+++.+.+.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcC
Confidence 3457899999999999999 999999999886666665443
No 354
>smart00594 UAS UAS domain.
Probab=90.93 E-value=1.2 Score=37.08 Aligned_cols=80 Identities=14% Similarity=0.219 Sum_probs=45.5
Q ss_pred cCCCCEEEEEecCCCC-hHHHH-------HHHHHhhccceEEEEeecC-CChHHHHHcCCCCCCeEEEEccCCc------
Q 013319 328 KARLPSVLLLSTKKET-PIIWR-------VLSGMYHERLNFYDTEVHD-VSDPAVKKLGVDALPAIVGWLSNGE------ 392 (445)
Q Consensus 328 ~~~~~~vvlF~~~~~~-~~~~~-------~lA~~~~~~~~f~~~~v~~-~~~~l~~~f~V~~~Ptlv~~~~~~~------ 392 (445)
...++.+|+|...... ...+. .+...+..+..+..+.+.. +...++++|+++++|+++++.+++.
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~ 104 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEW 104 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEE
Confidence 4455677777655422 11111 1222233333343344444 4567999999999999999987651
Q ss_pred ccccccccChhhHHH
Q 013319 393 KDVLKTGISVKDQKS 407 (445)
Q Consensus 393 ~~~~~~~~~~~~~~~ 407 (445)
...+.+..+.+++..
T Consensus 105 ~~~~~G~~~~~~l~~ 119 (122)
T smart00594 105 VGVVEGEISPEELMT 119 (122)
T ss_pred eccccCCCCHHHHHH
Confidence 224556666666643
No 355
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=90.81 E-value=0.79 Score=41.65 Aligned_cols=98 Identities=18% Similarity=0.295 Sum_probs=70.2
Q ss_pred cccc-ChhhHHHHhhcC--CcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEE
Q 013319 201 IRAL-NLQVFKKEIVEK--GMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRI 276 (445)
Q Consensus 201 V~~L-t~~~f~~~v~~~--~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti 276 (445)
|.+| +.+.|.+.|-.. ..+.+|..|-|...-|-. .....=+|.++ +.++|.+|-.. +-....+|..+.+ |+|
T Consensus 140 V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss-~~gas~~F~~n~l--P~L 215 (273)
T KOG3171|consen 140 VYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSS-NTGASDRFSLNVL--PTL 215 (273)
T ss_pred EEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeec-cccchhhhcccCC--ceE
Confidence 6777 457787777554 237788999999999999 88888888887 57999988654 3445678888999 999
Q ss_pred EEeccCCCCCCCeee--------ecCcccHHHHHHHHHh
Q 013319 277 FAYSYKAGDKGSLVE--------YNEHLVAKNLKSFCRD 307 (445)
Q Consensus 277 ~~f~~~~~~~g~~~~--------y~g~~~~~~l~~fi~~ 307 (445)
.+|+ +|+.+- +-.+..+.+|..|++.
T Consensus 216 liYk-----gGeLIgNFv~va~qlgedffa~dle~FL~e 249 (273)
T KOG3171|consen 216 LIYK-----GGELIGNFVSVAEQLGEDFFAGDLESFLNE 249 (273)
T ss_pred EEee-----CCchhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 9994 343321 2223445667777774
No 356
>PRK10638 glutaredoxin 3; Provisional
Probab=90.77 E-value=0.4 Score=36.97 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=34.5
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchh----hHhHhCCccCCCcEEEE
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEAS----LCKELGVHRPRSPRIFA 278 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~----lc~~~~I~~~~~Pti~~ 278 (445)
++.|..+||++|+. ...+++. .+.+..+|++.+.. +.+..+...+ |+|++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~v--P~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTV--PQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCc--CEEEE
Confidence 56778899999999 5555532 46677788877653 3344566778 98865
No 357
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=90.66 E-value=2.2 Score=32.28 Aligned_cols=39 Identities=13% Similarity=0.041 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEE
Q 013319 344 PIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVG 386 (445)
Q Consensus 344 ~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~ 386 (445)
.+.+++++.++...+.|+.+ + +.+.+.+++|.+.|||++
T Consensus 17 ~~~~~~~~~e~~~~~~~~~v--~--~~~~a~~~~v~~vPti~i 55 (76)
T TIGR00412 17 EKNVKKAVEELGIDAEFEKV--T--DMNEILEAGVTATPGVAV 55 (76)
T ss_pred HHHHHHHHHHcCCCeEEEEe--C--CHHHHHHcCCCcCCEEEE
Confidence 56778888888777777444 2 455688899999999996
No 358
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=90.31 E-value=1.7 Score=36.43 Aligned_cols=64 Identities=9% Similarity=0.036 Sum_probs=39.8
Q ss_pred CCCEEEEEecCCCC-----hHHHHHHHHHhhc---cceEEEEeecCC-----------------------ChHHHHHcCC
Q 013319 330 RLPSVLLLSTKKET-----PIIWRVLSGMYHE---RLNFYDTEVHDV-----------------------SDPAVKKLGV 378 (445)
Q Consensus 330 ~~~~vvlF~~~~~~-----~~~~~~lA~~~~~---~~~f~~~~v~~~-----------------------~~~l~~~f~V 378 (445)
+++++|.|...... .+.+.++..++++ .+.++.+.++.. +..+++.|+|
T Consensus 18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 97 (131)
T cd03009 18 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKI 97 (131)
T ss_pred CcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCC
Confidence 45677777654321 3445555556653 244444444322 1457889999
Q ss_pred CCCCeEEEEccCCcc
Q 013319 379 DALPAIVGWLSNGEK 393 (445)
Q Consensus 379 ~~~Ptlv~~~~~~~~ 393 (445)
..+|+++++.++++.
T Consensus 98 ~~~P~~~lid~~G~i 112 (131)
T cd03009 98 EGIPTLIILDADGEV 112 (131)
T ss_pred CCCCEEEEECCCCCE
Confidence 999999988877764
No 359
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=89.98 E-value=0.56 Score=37.53 Aligned_cols=44 Identities=7% Similarity=0.189 Sum_probs=30.7
Q ss_pred CCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhh----HhHhCCccCCCcEEEE
Q 013319 227 PSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASL----CKELGVHRPRSPRIFA 278 (445)
Q Consensus 227 p~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~l----c~~~~I~~~~~Pti~~ 278 (445)
|||++|+. ...+.+. .+.+-.+|+.+++.+ .+.-|...+ |.|++
T Consensus 25 ~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tv--P~vfi 73 (97)
T TIGR00365 25 PQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTI--PQLYV 73 (97)
T ss_pred CCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCC--CEEEE
Confidence 99999998 6565543 356778888776543 344566678 98876
No 360
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=89.70 E-value=0.89 Score=37.07 Aligned_cols=74 Identities=16% Similarity=0.227 Sum_probs=46.5
Q ss_pred eccccccchhhhccCCCCEEEEEecCCC-------ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEE
Q 013319 315 RISLNRIEFTFDAKARLPSVLLLSTKKE-------TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGW 387 (445)
Q Consensus 315 ~i~~~~~~~~~~~~~~~~~vvlF~~~~~-------~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~ 387 (445)
.++.++++.+... ....|++|..+.. ...++-+|.+.|.++...+.+. ...+.+|..+|+|..+|+++++
T Consensus 13 ~vd~~~ld~~l~~--~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~-~~~e~~L~~r~gv~~~PaLvf~ 89 (107)
T PF07449_consen 13 RVDADTLDAFLAA--PGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVA-RAAERALAARFGVRRWPALVFF 89 (107)
T ss_dssp EE-CCCHHHHHHC--CSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEE-HHHHHHHHHHHT-TSSSEEEEE
T ss_pred eechhhHHHHHhC--CCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEEC-chhHHHHHHHhCCccCCeEEEE
Confidence 3444444433332 4456777765432 2456777777788887764443 3367899999999999999966
Q ss_pred ccCC
Q 013319 388 LSNG 391 (445)
Q Consensus 388 ~~~~ 391 (445)
+.+.
T Consensus 90 R~g~ 93 (107)
T PF07449_consen 90 RDGR 93 (107)
T ss_dssp ETTE
T ss_pred ECCE
Confidence 6554
No 361
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=89.69 E-value=0.51 Score=37.13 Aligned_cols=44 Identities=7% Similarity=0.222 Sum_probs=30.5
Q ss_pred CCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhh----HhHhCCccCCCcEEEE
Q 013319 227 PSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASL----CKELGVHRPRSPRIFA 278 (445)
Q Consensus 227 p~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~l----c~~~~I~~~~~Pti~~ 278 (445)
|||++|+. ...+++. .+.+-.+|+.++.++ .+..|-..+ |+|++
T Consensus 21 ~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tv--P~vfi 69 (90)
T cd03028 21 PRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTF--PQLYV 69 (90)
T ss_pred CCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCC--CEEEE
Confidence 79999988 6555543 367788888776543 344566788 99865
No 362
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=89.37 E-value=2.9 Score=43.94 Aligned_cols=86 Identities=12% Similarity=0.045 Sum_probs=55.8
Q ss_pred CCCCEEEEEecCCCC-----hHHHHHHHHHhhc-cceEEEEee---------------------------cCCChHHHHH
Q 013319 329 ARLPSVLLLSTKKET-----PIIWRVLSGMYHE-RLNFYDTEV---------------------------HDVSDPAVKK 375 (445)
Q Consensus 329 ~~~~~vvlF~~~~~~-----~~~~~~lA~~~~~-~~~f~~~~v---------------------------~~~~~~l~~~ 375 (445)
..++++|.|+..+-. -+.+.+++.+++. .+.|+.+.+ .+.+..+++.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 456777777655432 4566667776652 243322211 1245678999
Q ss_pred cCCCCCCeEEEEccCCcc-cccccccChhhHHHHHHHHHh
Q 013319 376 LGVDALPAIVGWLSNGEK-DVLKTGISVKDQKSSIHELSK 414 (445)
Q Consensus 376 f~V~~~Ptlv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 414 (445)
|+|..+|+++++.+++.. ..+.+..+.++|+.+++..+.
T Consensus 135 fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~~~ 174 (521)
T PRK14018 135 LNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNPNA 174 (521)
T ss_pred cCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHhhh
Confidence 999999999888877654 456666777888888885443
No 363
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=89.00 E-value=3.3 Score=32.49 Aligned_cols=53 Identities=9% Similarity=0.040 Sum_probs=34.5
Q ss_pred CEEEEEecCCC-----ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEE
Q 013319 332 PSVLLLSTKKE-----TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVG 386 (445)
Q Consensus 332 ~~vvlF~~~~~-----~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~ 386 (445)
+.+.+|....- +...+..++..+. ++.+..+.+. ..++++++|+|.+.|++++
T Consensus 14 v~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~-~~~e~a~~~~V~~vPt~vi 71 (89)
T cd03026 14 INFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGA-LFQDEVEERGIMSVPAIFL 71 (89)
T ss_pred EEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhH-hCHHHHHHcCCccCCEEEE
Confidence 35666654321 2355666665543 4666555443 5678999999999999974
No 364
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.81 E-value=0.66 Score=42.34 Aligned_cols=67 Identities=16% Similarity=0.177 Sum_probs=50.4
Q ss_pred hhccCCCCEEEEEecCC-----CChHHHHHHHHHhhc-cceEEEEeecCCChHHHHHcCCCC------CCeEEEEccCCc
Q 013319 325 FDAKARLPSVLLLSTKK-----ETPIIWRVLSGMYHE-RLNFYDTEVHDVSDPAVKKLGVDA------LPAIVGWLSNGE 392 (445)
Q Consensus 325 ~~~~~~~~~vvlF~~~~-----~~~~~~~~lA~~~~~-~~~f~~~~v~~~~~~l~~~f~V~~------~Ptlv~~~~~~~ 392 (445)
...+..+.|+|-|.... ..++.|..|+.+|.. .++|+.+.+. .-++++++|+|+. +||+++|..+++
T Consensus 139 l~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiG-rfpd~a~kfris~s~~srQLPT~ilFq~gkE 217 (265)
T KOG0914|consen 139 LDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIG-RFPDVAAKFRISLSPGSRQLPTYILFQKGKE 217 (265)
T ss_pred hccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeec-cCcChHHheeeccCcccccCCeEEEEccchh
Confidence 33456677888775433 358999999999954 5689877666 4477899999874 899999998764
No 365
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=88.75 E-value=2.2 Score=35.08 Aligned_cols=61 Identities=18% Similarity=-0.022 Sum_probs=40.3
Q ss_pred CChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccChhhHH
Q 013319 342 ETPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGISVKDQK 406 (445)
Q Consensus 342 ~~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~~~~~ 406 (445)
..+..+.+.+.++. +.|... .+.+..+++.|+|.+.|+++++.+++-...+.+-.+.+++.
T Consensus 59 ~~~~~~~~~~~~~~--~~~~~~--~d~~~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~ 119 (123)
T cd03011 59 GDDGAVARFMQKKG--YGFPVI--NDPDGVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLR 119 (123)
T ss_pred CCHHHHHHHHHHcC--CCccEE--ECCCcHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHH
Confidence 34666777776665 334222 23557899999999999999998877333444445555553
No 366
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=87.31 E-value=3.5 Score=34.63 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=18.7
Q ss_pred HHHHHcCCCCCCeEEEEccCCcc
Q 013319 371 PAVKKLGVDALPAIVGWLSNGEK 393 (445)
Q Consensus 371 ~l~~~f~V~~~Ptlv~~~~~~~~ 393 (445)
.+.+.|+|..+|+++++.++++.
T Consensus 90 ~~~~~~~v~~iPt~~lid~~G~i 112 (132)
T cd02964 90 LLEKQFKVEGIPTLVVLKPDGDV 112 (132)
T ss_pred HHHHHcCCCCCCEEEEECCCCCE
Confidence 46678999999999988777653
No 367
>PRK10824 glutaredoxin-4; Provisional
Probab=87.14 E-value=0.86 Score=37.73 Aligned_cols=44 Identities=7% Similarity=0.113 Sum_probs=29.0
Q ss_pred CCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHh----HhCCccCCCcEEEE
Q 013319 227 PSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCK----ELGVHRPRSPRIFA 278 (445)
Q Consensus 227 p~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~----~~~I~~~~~Pti~~ 278 (445)
|||++|++ ...+.++ .+.+..+|.+++..+.. .-|...+ |.|++
T Consensus 28 p~Cpyc~~ak~lL~~~------~i~~~~idi~~d~~~~~~l~~~sg~~TV--PQIFI 76 (115)
T PRK10824 28 PSCGFSAQAVQALSAC------GERFAYVDILQNPDIRAELPKYANWPTF--PQLWV 76 (115)
T ss_pred CCCchHHHHHHHHHHc------CCCceEEEecCCHHHHHHHHHHhCCCCC--CeEEE
Confidence 69999998 7666654 24455667766654433 3356677 98887
No 368
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=86.46 E-value=1.5 Score=39.97 Aligned_cols=40 Identities=38% Similarity=0.430 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCH
Q 013319 39 ERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDE 85 (445)
Q Consensus 39 ~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~ 85 (445)
+++|+.+||.+|+.++..+|--| ++.-.+|..||+.+.-.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAILME 40 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHH
Confidence 47899999999999999998544 45566799999976543
No 369
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=86.45 E-value=5.3 Score=46.06 Aligned_cols=85 Identities=16% Similarity=0.077 Sum_probs=54.2
Q ss_pred CCCCEEEEEecCCC-----ChHHHHHHHHHhhcc-ceEEEEe---ec-----------------------CCChHHHHHc
Q 013319 329 ARLPSVLLLSTKKE-----TPIIWRVLSGMYHER-LNFYDTE---VH-----------------------DVSDPAVKKL 376 (445)
Q Consensus 329 ~~~~~vvlF~~~~~-----~~~~~~~lA~~~~~~-~~f~~~~---v~-----------------------~~~~~l~~~f 376 (445)
..++++|.|+..+. ..+.+.+++.+|+++ +.++-+. ++ +.+..+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 46788888876543 257788888888765 3332221 01 1234577899
Q ss_pred CCCCCCeEEEEccCCcc-cccccccChhhHHHHHHHHH
Q 013319 377 GVDALPAIVGWLSNGEK-DVLKTGISVKDQKSSIHELS 413 (445)
Q Consensus 377 ~V~~~Ptlv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 413 (445)
+|..+|+++++.++++. ..+.+....+++...+....
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHH
Confidence 99999999999877654 34555555566655555443
No 370
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=85.74 E-value=15 Score=31.93 Aligned_cols=79 Identities=11% Similarity=0.107 Sum_probs=46.9
Q ss_pred CCCEEEEEecCCCC-----hHHHHHHHHHhhccceEEEEeecCC-----------ChHHH-HHc---CCCCCCeEEEEcc
Q 013319 330 RLPSVLLLSTKKET-----PIIWRVLSGMYHERLNFYDTEVHDV-----------SDPAV-KKL---GVDALPAIVGWLS 389 (445)
Q Consensus 330 ~~~~vvlF~~~~~~-----~~~~~~lA~~~~~~~~f~~~~v~~~-----------~~~l~-~~f---~V~~~Ptlv~~~~ 389 (445)
....+|.|...... .+.+.+++.+++ +.++.++++.. +..+. +.| +|..+|+.+++.+
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 34557777765432 567777887774 44433444431 12333 445 7889999999988
Q ss_pred CCcc--cccccccChhhHHHHHH
Q 013319 390 NGEK--DVLKTGISVKDQKSSIH 410 (445)
Q Consensus 390 ~~~~--~~~~~~~~~~~~~~~~~ 410 (445)
++.. .+..+..+.+++...+.
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~ 150 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMD 150 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHH
Confidence 7553 24556666666644443
No 371
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=85.61 E-value=3.5 Score=33.06 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=48.4
Q ss_pred CCCCEEEEEecCCC----ChHHHHHHHHHhhccc--eEEEEeecCCChHHHHHcCCC----CCCeEEEEccCCc-ccccc
Q 013319 329 ARLPSVLLLSTKKE----TPIIWRVLSGMYHERL--NFYDTEVHDVSDPAVKKLGVD----ALPAIVGWLSNGE-KDVLK 397 (445)
Q Consensus 329 ~~~~~vvlF~~~~~----~~~~~~~lA~~~~~~~--~f~~~~v~~~~~~l~~~f~V~----~~Ptlv~~~~~~~-~~~~~ 397 (445)
....++++|+.... .-.++..+|...++.- .+++|. +.+.+.||+++.|. .-|..+.-..+++ ..-|+
T Consensus 18 Tr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCg-d~e~kKLCKKlKv~~~~kp~~~~LkHYKdG~fHkdYd 96 (112)
T cd03067 18 TRNNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCG-DSESRKLCKKLKVDPSSKPKPVELKHYKDGDFHTEYN 96 (112)
T ss_pred hcCcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecC-ChHHHHHHHHHccCCCCCCCcchhhcccCCCcccccc
Confidence 34456777765433 2456788888887654 455553 11468899999999 5565443333443 34555
Q ss_pred cccChhhHHHHHH
Q 013319 398 TGISVKDQKSSIH 410 (445)
Q Consensus 398 ~~~~~~~~~~~~~ 410 (445)
-..+...|+.|++
T Consensus 97 R~~t~kSmv~Flr 109 (112)
T cd03067 97 RQLTFKSMVAFLR 109 (112)
T ss_pred chhhHHHHHHHhh
Confidence 5555555555543
No 372
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=85.14 E-value=0.96 Score=41.56 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=31.7
Q ss_pred cEEEEEEECCCCccCCC-hhHH---HHHHHHhcCccEEEEEeC
Q 013319 218 MTWLLFFYSPSSNRDGY-ESVI---EEVANSMEGALKVGSINC 256 (445)
Q Consensus 218 ~~~lV~Fyap~C~~C~~-~p~~---~~~a~~l~~~v~~~~Vdc 256 (445)
.+-+|+|++-.|+||.. .+.+ +.+.+.+.+.+.+..+.+
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 45699999999999999 8765 778888877777777654
No 373
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=84.44 E-value=3.3 Score=45.55 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=11.4
Q ss_pred cCCCCCC--CHHHHHHHHHHHHHhh
Q 013319 36 LGVERNA--SQREIQKAFHKLSLQY 58 (445)
Q Consensus 36 Lgv~~~a--~~~~ik~ayr~l~~~~ 58 (445)
|.+++.| -..-+|.|-..|+.+.
T Consensus 1088 lqIshEaAAcItgLr~AmEaLvvev 1112 (1282)
T KOG0921|consen 1088 LQISHEAAACITGLRPAMEALVVEV 1112 (1282)
T ss_pred EeccHHHHHHHhhhHHHHHHHHHHH
Confidence 4444432 2334566666665543
No 374
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=84.35 E-value=3.5 Score=43.05 Aligned_cols=49 Identities=6% Similarity=0.047 Sum_probs=36.3
Q ss_pred CChHHHHHHHHHhhccceEE-EEeecC---CChHHHHHcCCCCCCeEEEEccC
Q 013319 342 ETPIIWRVLSGMYHERLNFY-DTEVHD---VSDPAVKKLGVDALPAIVGWLSN 390 (445)
Q Consensus 342 ~~~~~~~~lA~~~~~~~~f~-~~~v~~---~~~~l~~~f~V~~~Ptlv~~~~~ 390 (445)
...+.|+++|.++.+=-.++ .+.|++ .|..+|.+|+|+.||+|..|.++
T Consensus 74 ~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~ 126 (606)
T KOG1731|consen 74 AFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPD 126 (606)
T ss_pred hcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCc
Confidence 35899999999876533221 122333 78899999999999999988775
No 375
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=84.19 E-value=6.4 Score=31.05 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=19.8
Q ss_pred hHHHHHcCCCCCCeEEEEccCCc
Q 013319 370 DPAVKKLGVDALPAIVGWLSNGE 392 (445)
Q Consensus 370 ~~l~~~f~V~~~Ptlv~~~~~~~ 392 (445)
..+.+.|++.+.|+++++.+++.
T Consensus 87 ~~~~~~~~~~~~P~~~l~d~~g~ 109 (116)
T cd02966 87 GELAKAYGVRGLPTTFLIDRDGR 109 (116)
T ss_pred chHHHhcCcCccceEEEECCCCc
Confidence 77899999999999998877664
No 376
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.18 E-value=23 Score=34.44 Aligned_cols=80 Identities=9% Similarity=0.157 Sum_probs=46.3
Q ss_pred hHHHHHHHHHhhccc------eEEEEeecC-CChHHHHHcCCCCCCeEEEEccCCccccccccc-ChhhHHHHHHHHHhh
Q 013319 344 PIIWRVLSGMYHERL------NFYDTEVHD-VSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGI-SVKDQKSSIHELSKL 415 (445)
Q Consensus 344 ~~~~~~lA~~~~~~~------~f~~~~v~~-~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 415 (445)
-.+|..+|..++..- +..+|.|+- +.+++.+.+++++.|++++|.++..... +.+. +-.+.-...+.+.++
T Consensus 83 ~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~l~ln~~P~l~~f~P~~~n~~-~s~~~d~~~~g~~Ae~iaqf 161 (331)
T KOG2603|consen 83 EEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQLNLNNVPHLVLFSPAKGNKK-RSDQMDQQDLGFEAEQIAQF 161 (331)
T ss_pred HHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHHhcccCCCeEEEeCCCccccc-cCccchhhhcchhHHHHHHH
Confidence 467888888765322 222344443 5689999999999999999977543221 1111 112332234445555
Q ss_pred hhhhhhccc
Q 013319 416 LDGLKKRTK 424 (445)
Q Consensus 416 l~~~~~~n~ 424 (445)
+++.-+-|.
T Consensus 162 v~~~tkv~v 170 (331)
T KOG2603|consen 162 VADRTKVNV 170 (331)
T ss_pred HHHhhhhee
Confidence 555544443
No 377
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=83.66 E-value=5.2 Score=33.96 Aligned_cols=76 Identities=13% Similarity=0.194 Sum_probs=50.8
Q ss_pred EEEEEEECCCCccCCChhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccC--CCcEEEEeccCCCCCCCeeeecCcc
Q 013319 219 TWLLFFYSPSSNRDGYESVIEEVANSMEGALKVGSINCETEASLCKELGVHRP--RSPRIFAYSYKAGDKGSLVEYNEHL 296 (445)
Q Consensus 219 ~~lV~Fyap~C~~C~~~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~--~~Pti~~f~~~~~~~g~~~~y~g~~ 296 (445)
.-++.+|+|.|+.|.. |.+.-+ ...+.+..+..++...+-++++|..- .+=|.++ +| ....|..
T Consensus 26 ~~~~vyksPnCGCC~~---w~~~mk--~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI-------~G--y~vEGHV 91 (149)
T COG3019 26 TEMVVYKSPNCGCCDE---WAQHMK--ANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI-------NG--YYVEGHV 91 (149)
T ss_pred eeEEEEeCCCCccHHH---HHHHHH--hCCcEEEEeecCcHHHHHHhcCCChhhccccEEEE-------cC--EEEeccC
Confidence 3578899999999975 333333 23577777777777777788888532 1133443 23 3456888
Q ss_pred cHHHHHHHHHhh
Q 013319 297 VAKNLKSFCRDH 308 (445)
Q Consensus 297 ~~~~l~~fi~~~ 308 (445)
.+++|..++.+.
T Consensus 92 Pa~aI~~ll~~~ 103 (149)
T COG3019 92 PAEAIARLLAEK 103 (149)
T ss_pred CHHHHHHHHhCC
Confidence 889999888754
No 378
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=83.49 E-value=2.3 Score=34.55 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=35.8
Q ss_pred EEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccch-hh----HhHhCCccCCCcEEEEe
Q 013319 220 WLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEA-SL----CKELGVHRPRSPRIFAY 279 (445)
Q Consensus 220 ~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~-~l----c~~~~I~~~~~Pti~~f 279 (445)
-+|.|..+||+.|+. ...|.+ +.....+..+|-..+. ++ .+--+-+.+ |.+++-
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tv--P~vFI~ 74 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTV--PNVFIG 74 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCC--CEEEEC
Confidence 368899999999999 767766 4445666666655443 22 222334577 998883
No 379
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=82.95 E-value=1.4 Score=45.01 Aligned_cols=50 Identities=12% Similarity=0.192 Sum_probs=35.4
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhH---hH---------hCCccCCCcEEEE
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLC---KE---------LGVHRPRSPRIFA 278 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc---~~---------~~I~~~~~Pti~~ 278 (445)
++.|..|||++|+. ...+.+ ..|.+-.||+++++... ++ .|.+.+ |+|++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~------~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tv--P~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA------NDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTV--PQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH------CCCCeEEEECCCChhHHHHHHHHhhccccccCCCCcc--CeEEE
Confidence 78899999999998 544443 25778888988765322 22 356778 99977
No 380
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=82.16 E-value=2.3 Score=40.75 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=35.5
Q ss_pred CEEEEEecCCCC-----hHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCC
Q 013319 332 PSVLLLSTKKET-----PIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNG 391 (445)
Q Consensus 332 ~~vvlF~~~~~~-----~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~ 391 (445)
.+||.|+..... -..+..||.+|.. ++|+.+.+. ...+..+|.+..+|||++|+.+.
T Consensus 148 ~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~--~~~~~~~f~~~~LPtllvYk~G~ 209 (265)
T PF02114_consen 148 WVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRAS--KCPASENFPDKNLPTLLVYKNGD 209 (265)
T ss_dssp EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEEC--GCCTTTTS-TTC-SEEEEEETTE
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehh--ccCcccCCcccCCCEEEEEECCE
Confidence 345555554332 4668889998874 789554432 22378899999999999888654
No 381
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=82.13 E-value=3 Score=34.75 Aligned_cols=70 Identities=9% Similarity=0.077 Sum_probs=49.4
Q ss_pred cchhhhccCCCCEEEEEecCCCC-----hHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCC
Q 013319 321 IEFTFDAKARLPSVLLLSTKKET-----PIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNG 391 (445)
Q Consensus 321 ~~~~~~~~~~~~~vvlF~~~~~~-----~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~ 391 (445)
.+........+.+||-|..+..+ -..+..+|....+-+.++.|.+. +-++..+-|++...||++.|.+++
T Consensus 14 VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~Iylvdid-eV~~~~~~~~l~~p~tvmfFfn~k 88 (142)
T KOG3414|consen 14 VDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDID-EVPDFVKMYELYDPPTVMFFFNNK 88 (142)
T ss_pred HHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecc-hhhhhhhhhcccCCceEEEEEcCc
Confidence 33333345566778888776553 45667777777766666666655 447889999999999999888875
No 382
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=80.64 E-value=12 Score=30.95 Aligned_cols=35 Identities=14% Similarity=0.044 Sum_probs=24.4
Q ss_pred CChHHHHHcCCCCCCeEEEEccCCc-ccccccccCh
Q 013319 368 VSDPAVKKLGVDALPAIVGWLSNGE-KDVLKTGISV 402 (445)
Q Consensus 368 ~~~~l~~~f~V~~~Ptlv~~~~~~~-~~~~~~~~~~ 402 (445)
.+..+++.|+|..+|+.+++.+++. ...+.+..+.
T Consensus 88 ~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~ 123 (127)
T cd03010 88 PDGRVGIDLGVYGVPETFLIDGDGIIRYKHVGPLTP 123 (127)
T ss_pred CcchHHHhcCCCCCCeEEEECCCceEEEEEeccCCh
Confidence 4567888999999998777777665 3344454444
No 383
>PF13728 TraF: F plasmid transfer operon protein
Probab=78.69 E-value=13 Score=34.32 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhhccceEEEEeecC----------CChHHHHHcCCCCCCeEEEEccCC-ccccccccc-ChhhH
Q 013319 344 PIIWRVLSGMYHERLNFYDTEVHD----------VSDPAVKKLGVDALPAIVGWLSNG-EKDVLKTGI-SVKDQ 405 (445)
Q Consensus 344 ~~~~~~lA~~~~~~~~f~~~~v~~----------~~~~l~~~f~V~~~Ptlv~~~~~~-~~~~~~~~~-~~~~~ 405 (445)
.+++..++..+.=. +..++++. .+..++++++|+.+|+++++.+++ ....+..|. +..+|
T Consensus 139 ~pil~~~~~~yg~~--v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L 210 (215)
T PF13728_consen 139 APILQQFADKYGFS--VIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWYPVSQGFMSLDEL 210 (215)
T ss_pred HHHHHHHHHHhCCE--EEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEEEEeeecCCHHHH
Confidence 67888888887533 33344431 357899999999999999998865 444444454 44444
No 384
>PHA02125 thioredoxin-like protein
Probab=78.67 E-value=10 Score=28.38 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=19.6
Q ss_pred eEEEEeecCCChHHHHHcCCCCCCeEE
Q 013319 359 NFYDTEVHDVSDPAVKKLGVDALPAIV 385 (445)
Q Consensus 359 ~f~~~~v~~~~~~l~~~f~V~~~Ptlv 385 (445)
.++.++.. .+.+++++|+|.++||++
T Consensus 26 ~~~~vd~~-~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 26 TYVDVDTD-EGVELTAKHHIRSLPTLV 51 (75)
T ss_pred eEEeeeCC-CCHHHHHHcCCceeCeEE
Confidence 34444332 568999999999999998
No 385
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=77.38 E-value=20 Score=31.67 Aligned_cols=44 Identities=14% Similarity=-0.063 Sum_probs=29.6
Q ss_pred CChHHHHHcCCCCCCeEEEEccCCccc-ccccccChhhHHHHHHH
Q 013319 368 VSDPAVKKLGVDALPAIVGWLSNGEKD-VLKTGISVKDQKSSIHE 411 (445)
Q Consensus 368 ~~~~l~~~f~V~~~Ptlv~~~~~~~~~-~~~~~~~~~~~~~~~~~ 411 (445)
.+..+.+.|+|.++|+.+++.++++.. .+.+..+.+++...+..
T Consensus 125 ~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~ 169 (173)
T TIGR00385 125 PNGKLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLP 169 (173)
T ss_pred CCCchHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHH
Confidence 345678889999999888788777643 44455666666544443
No 386
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=76.41 E-value=23 Score=26.56 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=21.7
Q ss_pred CChHHHHHcCCCCCCeEEEEccCCccccccccc-ChhhHHHHH
Q 013319 368 VSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGI-SVKDQKSSI 409 (445)
Q Consensus 368 ~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~-~~~~~~~~~ 409 (445)
.+..-.++|||...|++++ |++ .+|.+.. +.+++++++
T Consensus 37 ~~~~~~~~ygv~~vPalvI---ng~-~~~~G~~p~~~el~~~l 75 (76)
T PF13192_consen 37 EDFEEIEKYGVMSVPALVI---NGK-VVFVGRVPSKEELKELL 75 (76)
T ss_dssp TTHHHHHHTT-SSSSEEEE---TTE-EEEESS--HHHHHHHHH
T ss_pred cCHHHHHHcCCCCCCEEEE---CCE-EEEEecCCCHHHHHHHh
Confidence 3444449999999999974 333 2444523 335665544
No 387
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=76.00 E-value=15 Score=31.79 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.1
Q ss_pred hHHHHHcCCCCCCeEEEEccCCccc
Q 013319 370 DPAVKKLGVDALPAIVGWLSNGEKD 394 (445)
Q Consensus 370 ~~l~~~f~V~~~Ptlv~~~~~~~~~ 394 (445)
..++++|+|.++|+++++.++++..
T Consensus 102 ~~l~~~y~v~~iPt~vlId~~G~Vv 126 (146)
T cd03008 102 RELEAQFSVEELPTVVVLKPDGDVL 126 (146)
T ss_pred HHHHHHcCCCCCCEEEEECCCCcEE
Confidence 4789999999999999888876643
No 388
>PF13446 RPT: A repeated domain in UCH-protein
Probab=74.01 E-value=6.2 Score=28.51 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=24.4
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHH
Q 013319 30 VDLYKVLGVERNASQREIQKAFHKLSL 56 (445)
Q Consensus 30 ~d~y~vLgv~~~a~~~~ik~ayr~l~~ 56 (445)
.+.|++|||+++.+++.|-.+|+....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998876
No 389
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=73.28 E-value=3.2 Score=41.20 Aligned_cols=53 Identities=34% Similarity=0.612 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCC-----ChHHHHHHHHHHHHHHHcCCHHHHHHhhhc
Q 013319 42 ASQREIQKAFHKLSLQYHPDKNK-----NKAAQEKFAEINNAYDILSDEEKRKNYDLY 94 (445)
Q Consensus 42 a~~~~ik~ayr~l~~~~hPd~~~-----~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~ 94 (445)
++..+|+.+|+..+...||++.. .....+.+++|.+||++|++...|...|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 56788999999999999999874 234577899999999999986555555543
No 390
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=72.18 E-value=42 Score=30.15 Aligned_cols=70 Identities=10% Similarity=0.084 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhhccceEEEEeecC------------CChHHHHHcCC--CCCCeEEEEccCCcc--cccccccChhhHHH
Q 013319 344 PIIWRVLSGMYHERLNFYDTEVHD------------VSDPAVKKLGV--DALPAIVGWLSNGEK--DVLKTGISVKDQKS 407 (445)
Q Consensus 344 ~~~~~~lA~~~~~~~~f~~~~v~~------------~~~~l~~~f~V--~~~Ptlv~~~~~~~~--~~~~~~~~~~~~~~ 407 (445)
-+.+.+++.++. +.++-++++. ....+.+.|++ ..+|+.+++.+++.. .++-|..+.+++..
T Consensus 88 ~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~ 165 (181)
T PRK13728 88 DPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMA 165 (181)
T ss_pred HHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHH
Confidence 456777888774 4433333332 12346778995 589999999888865 46778888777766
Q ss_pred HHHHHHhh
Q 013319 408 SIHELSKL 415 (445)
Q Consensus 408 ~~~~~~~~ 415 (445)
.+..+.+.
T Consensus 166 ~I~~ll~~ 173 (181)
T PRK13728 166 RMDTVLQM 173 (181)
T ss_pred HHHHHHhh
Confidence 55555443
No 391
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=70.58 E-value=35 Score=32.51 Aligned_cols=71 Identities=17% Similarity=0.212 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhhccceEEEEeecC----------CChHHHHHcCCCCCCeEEEEccC-Ccccccccc-cChhhHHHHHHH
Q 013319 344 PIIWRVLSGMYHERLNFYDTEVHD----------VSDPAVKKLGVDALPAIVGWLSN-GEKDVLKTG-ISVKDQKSSIHE 411 (445)
Q Consensus 344 ~~~~~~lA~~~~~~~~f~~~~v~~----------~~~~l~~~f~V~~~Ptlv~~~~~-~~~~~~~~~-~~~~~~~~~~~~ 411 (445)
.+..+.+|..|.=.+ ..++++. .+..+++++||+.+|+++++.++ ++.....-| ++.++| .+.
T Consensus 169 apil~~fa~~ygi~v--~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL---~~R 243 (256)
T TIGR02739 169 APVIQAFAKEYGISV--IPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSPLAYGFISQDEL---KER 243 (256)
T ss_pred HHHHHHHHHHhCCeE--EEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEEEeeccCCHHHH---HHH
Confidence 678888888876333 3344432 13568999999999999988886 443333444 455666 344
Q ss_pred HHhhhhhh
Q 013319 412 LSKLLDGL 419 (445)
Q Consensus 412 ~~~~l~~~ 419 (445)
+...+.+|
T Consensus 244 i~~v~~~f 251 (256)
T TIGR02739 244 ILNVLTQF 251 (256)
T ss_pred HHHHHhcc
Confidence 44444443
No 392
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=70.25 E-value=12 Score=32.75 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=40.8
Q ss_pred CcEEEEEEE-CCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCcc---chhhHhHhCCc
Q 013319 217 GMTWLLFFY-SPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCET---EASLCKELGVH 269 (445)
Q Consensus 217 ~~~~lV~Fy-ap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~---~~~lc~~~~I~ 269 (445)
++++++.|| ..+++-|.. +-.|++...+++. .+.+.-|..+. +...+++++++
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~ 88 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT 88 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 346778888 467888999 9999999998886 67777777665 35678888776
No 393
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=70.19 E-value=38 Score=29.65 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=35.3
Q ss_pred CChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCccc
Q 013319 342 ETPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKD 394 (445)
Q Consensus 342 ~~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~ 394 (445)
..+..++..+..+.-...+ +.+.+..+++.|+|...|+++++.+++...
T Consensus 75 d~~~~~~~~~~~~~~~~~~----l~D~~~~~~~~~~v~~~P~~~lid~~G~v~ 123 (171)
T cd02969 75 DSPENMKAKAKEHGYPFPY----LLDETQEVAKAYGAACTPDFFLFDPDGKLV 123 (171)
T ss_pred cCHHHHHHHHHHCCCCceE----EECCchHHHHHcCCCcCCcEEEECCCCeEE
Confidence 3577888877766543332 234567899999999999999888877643
No 394
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=69.65 E-value=23 Score=29.18 Aligned_cols=52 Identities=15% Similarity=0.147 Sum_probs=33.4
Q ss_pred ccceEEEEeecC-CChHHHHHcCCCCCCeEEEEcc-CCc---ccccccccChhhHHH
Q 013319 356 ERLNFYDTEVHD-VSDPAVKKLGVDALPAIVGWLS-NGE---KDVLKTGISVKDQKS 407 (445)
Q Consensus 356 ~~~~f~~~~v~~-~~~~l~~~f~V~~~Ptlv~~~~-~~~---~~~~~~~~~~~~~~~ 407 (445)
.+..+.-+++.. +...++..+++.++|+++++.. +++ ...+.|..+++++..
T Consensus 51 ~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~ 107 (116)
T cd02991 51 TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLIN 107 (116)
T ss_pred cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHH
Confidence 334444444443 3366999999999999998754 332 334667777777643
No 395
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=69.44 E-value=18 Score=29.07 Aligned_cols=56 Identities=16% Similarity=0.238 Sum_probs=29.3
Q ss_pred CCCEEEEEecCCCC-----hHHHHHHHHHhhccceEEEEeecC--CChHHHHHcCCCCCCeEE
Q 013319 330 RLPSVLLLSTKKET-----PIIWRVLSGMYHERLNFYDTEVHD--VSDPAVKKLGVDALPAIV 385 (445)
Q Consensus 330 ~~~~vvlF~~~~~~-----~~~~~~lA~~~~~~~~f~~~~v~~--~~~~l~~~f~V~~~Ptlv 385 (445)
.++++|.|...... .+.+..++..+.+.+.++.+...+ ....+++++++..+|+++
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEe
Confidence 45677777644321 345666666665555554332111 223456667776666653
No 396
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=68.51 E-value=10 Score=32.95 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=30.4
Q ss_pred CChHHHHHcCCCCCCeEEEEccCCccc-ccccccChhhHHHHH
Q 013319 368 VSDPAVKKLGVDALPAIVGWLSNGEKD-VLKTGISVKDQKSSI 409 (445)
Q Consensus 368 ~~~~l~~~f~V~~~Ptlv~~~~~~~~~-~~~~~~~~~~~~~~~ 409 (445)
+.++|+++|+|+++|+++.|..+|+.. .+.|-..++++...+
T Consensus 103 s~~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vl 145 (182)
T COG2143 103 STEELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVL 145 (182)
T ss_pred cHHHHHHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHH
Confidence 346899999999999999888876544 344445666655443
No 397
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=68.33 E-value=11 Score=39.71 Aligned_cols=84 Identities=14% Similarity=0.177 Sum_probs=48.0
Q ss_pred ccCCCCEEEEEecCCC-C-----hHHH--HHHHHHhhccceE-EEEeecC-CChHHHHHcCCCCCCeEEEEccC-Ccccc
Q 013319 327 AKARLPSVLLLSTKKE-T-----PIIW--RVLSGMYHERLNF-YDTEVHD-VSDPAVKKLGVDALPAIVGWLSN-GEKDV 395 (445)
Q Consensus 327 ~~~~~~~vvlF~~~~~-~-----~~~~--~~lA~~~~~~~~f-~~~~v~~-~~~~l~~~f~V~~~Ptlv~~~~~-~~~~~ 395 (445)
.+..+|+++.|+.+.. + +..+ .+.+.++.+.+-. ++.+.++ .+.++.++||+-+.|++++|..+ ++...
T Consensus 471 ~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~ 550 (569)
T COG4232 471 EAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQGSEPEI 550 (569)
T ss_pred hCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCCCCcCcC
Confidence 4445699999986542 1 2222 1222233332222 3443333 45678899999999999988864 45555
Q ss_pred cccccChhhHHHHHH
Q 013319 396 LKTGISVKDQKSSIH 410 (445)
Q Consensus 396 ~~~~~~~~~~~~~~~ 410 (445)
.-+-++.+.+.+.++
T Consensus 551 l~gf~~a~~~~~~l~ 565 (569)
T COG4232 551 LTGFLTADAFLEHLE 565 (569)
T ss_pred CcceecHHHHHHHHH
Confidence 555555555544443
No 398
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=67.34 E-value=23 Score=26.46 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=39.1
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhhhc
Q 013319 30 VDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLY 94 (445)
Q Consensus 30 ~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~ 94 (445)
+|.-++++++|-|++.||+.|-++.+++..--..++....+.|..--++.. ...|...|..
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~AV~~ia----A~areLLDaL 63 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAAVAEIA----ATARELLDAL 63 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHH----HHHHHHHHhc
Confidence 455578999999999999999988888775444444444555554433322 2335555543
No 399
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=64.83 E-value=21 Score=30.96 Aligned_cols=51 Identities=12% Similarity=0.049 Sum_probs=37.4
Q ss_pred cEEEEEEECCCCccCCC--hhHHHHHHHHhcC-cc-EEEEEeCccc---hhhHhHhCC
Q 013319 218 MTWLLFFYSPSSNRDGY--ESVIEEVANSMEG-AL-KVGSINCETE---ASLCKELGV 268 (445)
Q Consensus 218 ~~~lV~Fyap~C~~C~~--~p~~~~~a~~l~~-~v-~~~~Vdc~~~---~~lc~~~~I 268 (445)
.++|+.|-+.||+.|.. .+.|.+...++.. .+ .+..|.++.. .+.|+++++
T Consensus 31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 34455555789999986 7889998888874 45 5888888764 456777776
No 400
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=64.22 E-value=14 Score=27.82 Aligned_cols=56 Identities=11% Similarity=0.248 Sum_probs=39.5
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHh-cCccEEEEEeCccchhhHhHhCCccCCCcEEEE
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSM-EGALKVGSINCETEASLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l-~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~ 278 (445)
|..|-+...+.++. .....++-+++ .+.+.+-.||..+++.+++.++|-.. ||++-
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAt--PtLvk 61 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVAT--PTLVK 61 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEe--chhhh
Confidence 34444444455555 44444444444 45788999999999999999999999 99654
No 401
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=63.88 E-value=14 Score=30.06 Aligned_cols=60 Identities=17% Similarity=0.275 Sum_probs=31.6
Q ss_pred CEEEEEecCCCCh------HHHHHHHHHhhccceEEEEeecC---CChHHHHHcCCCC-CCeEEEEccCC
Q 013319 332 PSVLLLSTKKETP------IIWRVLSGMYHERLNFYDTEVHD---VSDPAVKKLGVDA-LPAIVGWLSNG 391 (445)
Q Consensus 332 ~~vvlF~~~~~~~------~~~~~lA~~~~~~~~f~~~~v~~---~~~~l~~~f~V~~-~Ptlv~~~~~~ 391 (445)
..+++|--...++ ..|.+......+.+.++++.|-. .+..++.+|||+. -|.++++++++
T Consensus 20 ~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~ 89 (105)
T PF11009_consen 20 KPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGK 89 (105)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTE
T ss_pred CcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCE
Confidence 3466665555443 23444444444446666666554 4567999999998 89999776544
No 402
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=63.26 E-value=52 Score=27.36 Aligned_cols=60 Identities=23% Similarity=0.462 Sum_probs=29.7
Q ss_pred CCCCEEEEEecCCC-C------------hHHHHHHHHHhhccceEEEEeecCC----C--hHHHH--HcCCCCCCeEEEE
Q 013319 329 ARLPSVLLLSTKKE-T------------PIIWRVLSGMYHERLNFYDTEVHDV----S--DPAVK--KLGVDALPAIVGW 387 (445)
Q Consensus 329 ~~~~~vvlF~~~~~-~------------~~~~~~lA~~~~~~~~f~~~~v~~~----~--~~l~~--~f~V~~~Ptlv~~ 387 (445)
...+.+|+|+.... + |.+.++++. ..+...|+.|.|.+. + -...+ +++|+.+|||+-+
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~-~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~ 96 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKK-APENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRW 96 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH--STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEEC
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHh-CCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEE
Confidence 44577788864321 1 455555544 455677877777551 1 12333 4999999999955
Q ss_pred cc
Q 013319 388 LS 389 (445)
Q Consensus 388 ~~ 389 (445)
..
T Consensus 97 ~~ 98 (119)
T PF06110_consen 97 ET 98 (119)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 403
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=61.39 E-value=41 Score=31.86 Aligned_cols=93 Identities=22% Similarity=0.279 Sum_probs=57.1
Q ss_pred CcEEEEEEECCCCcc-CCC-hhHHHHHHHHhcC--cc----EEEEEeCccc--------------------------hhh
Q 013319 217 GMTWLLFFYSPSSNR-DGY-ESVIEEVANSMEG--AL----KVGSINCETE--------------------------ASL 262 (445)
Q Consensus 217 ~~~~lV~Fyap~C~~-C~~-~p~~~~~a~~l~~--~v----~~~~Vdc~~~--------------------------~~l 262 (445)
++.+|++|-=..|+. |-. ...+..+..+++. .+ .|..||=..+ +++
T Consensus 139 Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~v 218 (280)
T KOG2792|consen 139 GKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQV 218 (280)
T ss_pred cceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHH
Confidence 445677787888988 876 5555556665553 11 3455554222 467
Q ss_pred HhHhCCccCCCc-----------EEEEeccCCCCCCCeeeecC-cccHHHHHHHHHhhCCC
Q 013319 263 CKELGVHRPRSP-----------RIFAYSYKAGDKGSLVEYNE-HLVAKNLKSFCRDHLPR 311 (445)
Q Consensus 263 c~~~~I~~~~~P-----------ti~~f~~~~~~~g~~~~y~g-~~~~~~l~~fi~~~lp~ 311 (445)
|++|.|..-..| ||++|=- .++|+-+.|-| .+++++|.+-|.+++.+
T Consensus 219 ak~yRVYfs~gp~d~~~DYlVDHSi~mYLi--dPeg~Fvd~~GrN~~~~~~~~~I~~~v~~ 277 (280)
T KOG2792|consen 219 AKKYRVYFSTGPKDEDQDYLVDHSIFMYLI--DPEGEFVDYYGRNYDADELADSILKHVAS 277 (280)
T ss_pred HHHhEEeeccCCCCCCCCeeeeeeEEEEEE--CCCcceehhhcccCCHHHHHHHHHHHHHh
Confidence 888877544112 3555521 24677778776 56888898888877653
No 404
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=60.88 E-value=15 Score=28.71 Aligned_cols=57 Identities=11% Similarity=0.201 Sum_probs=42.4
Q ss_pred EEEEEECCCCccCCC-hhHHHHH-HHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEE
Q 013319 220 WLLFFYSPSSNRDGY-ESVIEEV-ANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 220 ~lV~Fyap~C~~C~~-~p~~~~~-a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~ 278 (445)
.|=.|.+...+.++. .....++ .+.+.+.+.+-.||..+++.+++.+.|-+. ||++=
T Consensus 5 ~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvAT--PtLIK 63 (87)
T TIGR02654 5 VLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILAT--PTLSK 63 (87)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEe--cHHhh
Confidence 445566666666666 4445554 445556788899999999999999999999 99654
No 405
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=59.64 E-value=73 Score=30.19 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhhccceEEEEeecC----------CChHHHHHcCCCCCCeEEEEccCC-ccccc-ccccChhhH
Q 013319 344 PIIWRVLSGMYHERLNFYDTEVHD----------VSDPAVKKLGVDALPAIVGWLSNG-EKDVL-KTGISVKDQ 405 (445)
Q Consensus 344 ~~~~~~lA~~~~~~~~f~~~~v~~----------~~~~l~~~f~V~~~Ptlv~~~~~~-~~~~~-~~~~~~~~~ 405 (445)
.+..+.+|..+.=.+. -++++. .+...+++++|+.+|+++++.++. +.... .|-++.+++
T Consensus 162 aPil~~fa~~yg~~v~--~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL 233 (248)
T PRK13703 162 AQVINDFRDTYGLSVI--PVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRPLSYGFITQDDL 233 (248)
T ss_pred HHHHHHHHHHhCCeEE--EEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEEEeeccCCHHHH
Confidence 6888888888764332 233332 234577899999999999888854 43333 344455666
No 406
>COG4907 Predicted membrane protein [Function unknown]
Probab=58.90 E-value=18 Score=36.84 Aligned_cols=22 Identities=23% Similarity=-0.003 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHH
Q 013319 68 AQEKFAEINNAYDILSDEEKRK 89 (445)
Q Consensus 68 ~~~~f~~i~~Ay~~L~d~~~r~ 89 (445)
|.---.++-+|++.+-+.+.-+
T Consensus 521 ALGV~dkVvkam~~~~~~e~ik 542 (595)
T COG4907 521 ALGVSDKVVKAMRKALDMEIIK 542 (595)
T ss_pred hhccHHHHHHHHHHhCcHhHhc
Confidence 3334556778888766655444
No 407
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=58.59 E-value=15 Score=31.05 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=26.6
Q ss_pred CChHHHHHcCCCCCCeEEEEccCC-----------cccccccccCh
Q 013319 368 VSDPAVKKLGVDALPAIVGWLSNG-----------EKDVLKTGISV 402 (445)
Q Consensus 368 ~~~~l~~~f~V~~~Ptlv~~~~~~-----------~~~~~~~~~~~ 402 (445)
.|+.+.++|+|+..|++++...+. ...+..|..+.
T Consensus 59 IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl 104 (130)
T TIGR02742 59 IDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSL 104 (130)
T ss_pred EChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccH
Confidence 369999999999999999776653 34455666665
No 408
>PRK09301 circadian clock protein KaiB; Provisional
Probab=58.13 E-value=17 Score=29.29 Aligned_cols=58 Identities=10% Similarity=0.192 Sum_probs=43.8
Q ss_pred EEEEEEECCCCccCCC-hhHHHHH-HHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEE
Q 013319 219 TWLLFFYSPSSNRDGY-ESVIEEV-ANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 219 ~~lV~Fyap~C~~C~~-~p~~~~~-a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~ 278 (445)
..|=.|.+...+.++. .....++ .+.+.+.+.+-.||..+++.+++.+.|-+. ||++=
T Consensus 7 ~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvAT--PTLIK 66 (103)
T PRK09301 7 YILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILAT--PTLAK 66 (103)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEe--cHHhh
Confidence 4555677777766666 5555555 445556788899999999999999999999 99654
No 409
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=55.68 E-value=7.5 Score=36.32 Aligned_cols=60 Identities=8% Similarity=-0.038 Sum_probs=46.7
Q ss_pred CCCcccccChhhHHHH--hhcCCcEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeC
Q 013319 197 SSGNIRALNLQVFKKE--IVEKGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINC 256 (445)
Q Consensus 197 ~~~~V~~Lt~~~f~~~--v~~~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc 256 (445)
++++|..++.++..+. -.+.++|.++.|-|=.|+.-.. .+.|+++++++.+.+.|..|-+
T Consensus 80 Pns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI 142 (237)
T PF00837_consen 80 PNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYI 142 (237)
T ss_pred CCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhH
Confidence 4667888887762121 2356789999999999999888 9999999999988777766653
No 410
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=54.41 E-value=95 Score=27.66 Aligned_cols=45 Identities=20% Similarity=0.038 Sum_probs=31.1
Q ss_pred CChHHHHHcCCCCCCeEEEEccCCcc-cccccccChhhHHHHHHHH
Q 013319 368 VSDPAVKKLGVDALPAIVGWLSNGEK-DVLKTGISVKDQKSSIHEL 412 (445)
Q Consensus 368 ~~~~l~~~f~V~~~Ptlv~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 412 (445)
.+..+.+.|+|...|+.+++.+++.. ..+.+..+.+++.+.+..+
T Consensus 130 ~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~ 175 (185)
T PRK15412 130 GDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPL 175 (185)
T ss_pred CCccHHHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHH
Confidence 44567789999999988888887763 3455556666665555444
No 411
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=53.98 E-value=1e+02 Score=27.56 Aligned_cols=25 Identities=20% Similarity=0.078 Sum_probs=20.6
Q ss_pred ChHHHHHcCCCCCCeEEEEccCCcc
Q 013319 369 SDPAVKKLGVDALPAIVGWLSNGEK 393 (445)
Q Consensus 369 ~~~l~~~f~V~~~Ptlv~~~~~~~~ 393 (445)
+.++.+.|+|...|+.+++.+++..
T Consensus 135 ~~~i~~~y~v~~~P~~~lID~~G~I 159 (189)
T TIGR02661 135 SAEIGMAFQVGKIPYGVLLDQDGKI 159 (189)
T ss_pred hhHHHHhccCCccceEEEECCCCeE
Confidence 4678889999999999888877754
No 412
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=53.87 E-value=27 Score=28.72 Aligned_cols=44 Identities=25% Similarity=0.375 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCC-hH----HHHHHHHHHHHHHHcC
Q 013319 40 RNASQREIQKAFHKLSLQYHPDKNKN-KA----AQEKFAEINNAYDILS 83 (445)
Q Consensus 40 ~~a~~~~ik~ayr~l~~~~hPd~~~~-~~----~~~~f~~i~~Ay~~L~ 83 (445)
+..+..+++.|.|.+-++.|||.... |. .++-++.++.-.+.|.
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~ 52 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLK 52 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHh
Confidence 34567899999999999999997653 22 2333555555555544
No 413
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=53.74 E-value=75 Score=29.27 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEc
Q 013319 344 PIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWL 388 (445)
Q Consensus 344 ~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~ 388 (445)
.....-||.+|. .++| |.+..++...-.+|....+|+|++|.
T Consensus 178 n~~~~cLAAeyP-~vKF--ckikss~~gas~~F~~n~lP~LliYk 219 (273)
T KOG3171|consen 178 NSSLTCLAAEYP-IVKF--CKIKSSNTGASDRFSLNVLPTLLIYK 219 (273)
T ss_pred hhhHHHhhccCC-ceeE--EEeeeccccchhhhcccCCceEEEee
Confidence 455666777664 4677 66677777888999999999999443
No 414
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=53.59 E-value=25 Score=30.46 Aligned_cols=50 Identities=14% Similarity=0.351 Sum_probs=33.8
Q ss_pred EEEEECC------CCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhH----hHhCC----ccCCCcEEEE
Q 013319 221 LLFFYSP------SSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLC----KELGV----HRPRSPRIFA 278 (445)
Q Consensus 221 lV~Fyap------~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc----~~~~I----~~~~~Pti~~ 278 (445)
+|.|.++ +|++|+. ...++.. .|.+-.+|++.+..+. +..+- ..+ |.|++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tv--PqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSL--PRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCC--CEEEE
Confidence 4667777 8999988 6555532 5778889998765443 33343 456 98877
No 415
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=52.75 E-value=97 Score=23.60 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=42.3
Q ss_pred CCCEEEEEecCC-----CChHHHHHHHHHhhccceEEEEeecCCChHHHHHcC--CCCCCeEEEEccCCc
Q 013319 330 RLPSVLLLSTKK-----ETPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLG--VDALPAIVGWLSNGE 392 (445)
Q Consensus 330 ~~~~vvlF~~~~-----~~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~--V~~~Ptlv~~~~~~~ 392 (445)
..+.++.|.... ...+.+..++..+...+.+..+++.+.++.+...|+ +..+|+++++.....
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence 445566543222 135777888888876667766655434688999999 899999986666544
No 416
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=52.58 E-value=38 Score=27.81 Aligned_cols=45 Identities=9% Similarity=0.096 Sum_probs=28.9
Q ss_pred CChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEcc
Q 013319 342 ETPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLS 389 (445)
Q Consensus 342 ~~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~ 389 (445)
+..++.+++..-..+.-.-.-+. -|+.+.++|+|+..|++++...
T Consensus 36 ~~~~t~~~~~~l~~~~~~~~~v~---IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPCPGVQ---IDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCCccee---EChhHHhhCCceEcCEEEEEcC
Confidence 45555555555444332211122 4699999999999999996665
No 417
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=51.72 E-value=65 Score=24.35 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=32.7
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCChHHHHHHHH
Q 013319 30 VDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAE 74 (445)
Q Consensus 30 ~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~ 74 (445)
+|--.+.++.|-++++||+.|-.+.+++..=-..+.....+.|.+
T Consensus 3 RnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~ 47 (78)
T PF10041_consen 3 RNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDR 47 (78)
T ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHH
Confidence 344467788999999999999998888886655555444455543
No 418
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=46.63 E-value=12 Score=33.42 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=25.4
Q ss_pred EEECCCCccCCC-hhHHHHHHHHhcCccEEEEEe
Q 013319 223 FFYSPSSNRDGY-ESVIEEVANSMEGALKVGSIN 255 (445)
Q Consensus 223 ~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vd 255 (445)
.|..|.|+.|-. +|.|.++..++...+.+--|=
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~ 35 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIP 35 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEE
Confidence 589999999999 999999999999876654443
No 419
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=46.14 E-value=12 Score=30.09 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=21.9
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccc
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETE 259 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~ 259 (445)
++.|+.|+|+.|+. ...+++ ..+.+-.+|..++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~ 34 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEE------HGIEYEFIDYLKE 34 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHH------cCCCcEEEeeccC
Confidence 35789999999998 433332 2456667776554
No 420
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=44.40 E-value=1.2e+02 Score=25.38 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=41.7
Q ss_pred cCCC--hhHHHHHHHHhc----CccEEEEEeCccch----------hhHhHhCCccCCCcEEEEeccCCCCCCCeeeecC
Q 013319 231 RDGY--ESVIEEVANSME----GALKVGSINCETEA----------SLCKELGVHRPRSPRIFAYSYKAGDKGSLVEYNE 294 (445)
Q Consensus 231 ~C~~--~p~~~~~a~~l~----~~v~~~~Vdc~~~~----------~lc~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g 294 (445)
-|-. .|++..++..++ ..+.+.+-|...++ ++.++.|.... |-+++ +|+++..-.
T Consensus 17 vCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~L--PitlV-------dGeiv~~G~ 87 (123)
T PF06953_consen 17 VCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEAL--PITLV-------DGEIVKTGR 87 (123)
T ss_dssp -SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG---SEEEE-------TTEEEEESS
T ss_pred ccCCCCCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccC--CEEEE-------CCEEEEecC
Confidence 3655 666666665554 27999999999874 45566788999 97666 566666555
Q ss_pred cccHHHHHHHHHh
Q 013319 295 HLVAKNLKSFCRD 307 (445)
Q Consensus 295 ~~~~~~l~~fi~~ 307 (445)
-.+.++|.+|+.-
T Consensus 88 YPt~eEl~~~~~i 100 (123)
T PF06953_consen 88 YPTNEELAEWLGI 100 (123)
T ss_dssp ---HHHHHHHHT-
T ss_pred CCCHHHHHHHhCC
Confidence 5578999999963
No 421
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=43.39 E-value=1.1e+02 Score=25.12 Aligned_cols=47 Identities=13% Similarity=0.048 Sum_probs=31.0
Q ss_pred ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcc
Q 013319 343 TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEK 393 (445)
Q Consensus 343 ~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~ 393 (445)
.+...++.+.++. +.|-. +.+.+..+.+.|++..+|+.+++.++++.
T Consensus 72 ~~~~~~~~~~~~~--~~~p~--~~D~~~~~~~~~~v~~~P~~~vid~~G~v 118 (126)
T cd03012 72 DLANVKSAVLRYG--ITYPV--ANDNDYATWRAYGNQYWPALYLIDPTGNV 118 (126)
T ss_pred CHHHHHHHHHHcC--CCCCE--EECCchHHHHHhCCCcCCeEEEECCCCcE
Confidence 3555555555543 33321 22355789999999999999988777653
No 422
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=43.38 E-value=17 Score=32.33 Aligned_cols=22 Identities=14% Similarity=0.422 Sum_probs=16.4
Q ss_pred CChHHHHHcCCCCCCeEEEEcc
Q 013319 368 VSDPAVKKLGVDALPAIVGWLS 389 (445)
Q Consensus 368 ~~~~l~~~f~V~~~Ptlv~~~~ 389 (445)
.+..++++.+|+++||+|++..
T Consensus 135 ~D~~la~~m~I~~~Ptlvi~~~ 156 (176)
T PF13743_consen 135 EDQQLAREMGITGFPTLVIFNE 156 (176)
T ss_dssp HHHHHHHHTT-SSSSEEEEE--
T ss_pred HHHHHHHHcCCCCCCEEEEEec
Confidence 3467899999999999998874
No 423
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=43.31 E-value=39 Score=30.83 Aligned_cols=35 Identities=17% Similarity=0.448 Sum_probs=28.7
Q ss_pred CChHHHHHcCCCCCCeEEEEccCCcccccccccChh
Q 013319 368 VSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGISVK 403 (445)
Q Consensus 368 ~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~~ 403 (445)
.++.+.++|+|+.+|++|+. +....++..+.++..
T Consensus 150 IDP~lF~~F~I~~VPafVv~-C~~~yD~I~GNIsl~ 184 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVF-CSQGYDIIRGNLRVG 184 (212)
T ss_pred ECHHHHHhcCCccccEEEEE-cCCCCCEEEecccHH
Confidence 36999999999999999964 666677777888773
No 424
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=42.11 E-value=17 Score=18.01 Aligned_cols=13 Identities=54% Similarity=0.930 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHcC
Q 013319 71 KFAEINNAYDILS 83 (445)
Q Consensus 71 ~f~~i~~Ay~~L~ 83 (445)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888888774
No 425
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=42.06 E-value=40 Score=30.54 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=44.0
Q ss_pred cchhhhccCCCCEEEEEecCCC--C---hHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccc
Q 013319 321 IEFTFDAKARLPSVLLLSTKKE--T---PIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDV 395 (445)
Q Consensus 321 ~~~~~~~~~~~~~vvlF~~~~~--~---~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~ 395 (445)
-+|+.......-+|+.|+.+.. + -.-++.||..+-+ .+|+.+++. ..+=++.+++|+-+|+|++|.++.....
T Consensus 75 kdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae-~~PFlv~kL~IkVLP~v~l~k~g~~~D~ 152 (211)
T KOG1672|consen 75 KDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAE-KAPFLVTKLNIKVLPTVALFKNGKTVDY 152 (211)
T ss_pred HHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecc-cCceeeeeeeeeEeeeEEEEEcCEEEEE
Confidence 3444333233344556654432 2 3445566665543 478665544 3477999999999999998887765443
No 426
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=41.51 E-value=63 Score=34.93 Aligned_cols=78 Identities=12% Similarity=0.054 Sum_probs=57.3
Q ss_pred CcccccChhhHHHHhhcCCcEEEEEEECCCCccCCC--hhHH--HHHHHHhcCccEEEEEeCccchhh-------HhHhC
Q 013319 199 GNIRALNLQVFKKEIVEKGMTWLLFFYSPSSNRDGY--ESVI--EEVANSMEGALKVGSINCETEASL-------CKELG 267 (445)
Q Consensus 199 ~~V~~Lt~~~f~~~v~~~~~~~lV~Fyap~C~~C~~--~p~~--~~~a~~l~~~v~~~~Vdc~~~~~l-------c~~~~ 267 (445)
.+-....++.|.+ ....++|+|+-.-..||.=|+. ...| .++|..++..+.-++||-++-|.+ |+-..
T Consensus 26 V~W~pW~~eAf~~-A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~t 104 (667)
T COG1331 26 VDWYPWGEEAFAK-AKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAIT 104 (667)
T ss_pred ccccccCHHHHHH-HHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhc
Confidence 3445778999955 6778889999999999999998 4555 578999988777789998876544 54444
Q ss_pred Cc-cCCCcEEEEe
Q 013319 268 VH-RPRSPRIFAY 279 (445)
Q Consensus 268 I~-~~~~Pti~~f 279 (445)
.+ ++ |--++.
T Consensus 105 G~GGW--PLtVfL 115 (667)
T COG1331 105 GQGGW--PLTVFL 115 (667)
T ss_pred cCCCC--ceeEEE
Confidence 43 45 865554
No 427
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=40.79 E-value=96 Score=28.44 Aligned_cols=53 Identities=19% Similarity=0.232 Sum_probs=40.0
Q ss_pred CCcEEEEEEECCCCcc-CCC-hhHHHHHHHHhc-C---ccEEEEEeCccc---hhhHhHhCC
Q 013319 216 KGMTWLLFFYSPSSNR-DGY-ESVIEEVANSME-G---ALKVGSINCETE---ASLCKELGV 268 (445)
Q Consensus 216 ~~~~~lV~Fyap~C~~-C~~-~p~~~~~a~~l~-~---~v~~~~Vdc~~~---~~lc~~~~I 268 (445)
.+++++|.|-=..|+. |.. ...+..+-+++. + .+++.-|.+|-+ ++..++|..
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 5678999998889988 999 888888888887 3 577777776655 455566655
No 428
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=40.55 E-value=65 Score=23.36 Aligned_cols=51 Identities=4% Similarity=-0.004 Sum_probs=29.5
Q ss_pred EEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccc-hhhHhHhCCccCCCcEEEE
Q 013319 222 LFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETE-ASLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 222 V~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~-~~lc~~~~I~~~~~Pti~~ 278 (445)
+.|+.+||+.|++ .-..++. +-.+.+..||-... .++.+......+ |+|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~----gl~~e~~~v~~~~~~~~~~~~np~~~v--P~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA----GITVELREVELKNKPAEMLAASPKGTV--PVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc----CCCcEEEEeCCCCCCHHHHHHCCCCCC--CEEEE
Confidence 4677899999987 4333322 11355556665432 344444455667 98864
No 429
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=40.02 E-value=1.9e+02 Score=22.88 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=44.4
Q ss_pred cEEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEeccCCCCCCCeeeecCcc
Q 013319 218 MTWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYSYKAGDKGSLVEYNEHL 296 (445)
Q Consensus 218 ~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g~~ 296 (445)
.+.++.|..+. ..|.. ....+++|.. .+.+.+-..+-.+ .. |++.+...+ +...+.|.|-.
T Consensus 20 pV~l~~f~~~~-~~~~e~~~ll~e~a~l-SdkI~~~~~~~~~-----------~~--P~~~i~~~~---~~~gIrF~GiP 81 (94)
T cd02974 20 PVELVASLDDS-EKSAELLELLEEIASL-SDKITLEEDNDDE-----------RK--PSFSINRPG---EDTGIRFAGIP 81 (94)
T ss_pred CEEEEEEeCCC-cchHHHHHHHHHHHHh-CCceEEEEecCCC-----------CC--CEEEEecCC---CcccEEEEecC
Confidence 35566776655 77888 7777777664 3555553322111 35 999997332 11348888876
Q ss_pred cHHHHHHHHHh
Q 013319 297 VAKNLKSFCRD 307 (445)
Q Consensus 297 ~~~~l~~fi~~ 307 (445)
.=.++..||..
T Consensus 82 ~GhEf~Slila 92 (94)
T cd02974 82 MGHEFTSLVLA 92 (94)
T ss_pred CchhHHHHHHH
Confidence 66777777754
No 430
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=39.37 E-value=1e+02 Score=22.67 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=43.0
Q ss_pred EEECCCCccCCChhHHHHHHHHhcC-ccEEEEEeCccc-hhhHhHhCCccCCCcEEEEeccCCCCCCCeeeecCcccHHH
Q 013319 223 FFYSPSSNRDGYESVIEEVANSMEG-ALKVGSINCETE-ASLCKELGVHRPRSPRIFAYSYKAGDKGSLVEYNEHLVAKN 300 (445)
Q Consensus 223 ~Fyap~C~~C~~~p~~~~~a~~l~~-~v~~~~Vdc~~~-~~lc~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g~~~~~~ 300 (445)
.++.++|+.|++.- ++-.+++ .+.+..|+..+. ..+.+...-..+ |+|. . +|. .. .+...
T Consensus 1 Ly~~~~Sp~~~kv~----~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~v--PvL~-~------~g~--~l---~dS~~ 62 (75)
T PF13417_consen 1 LYGFPGSPYSQKVR----LALEEKGIPYELVPVDPEEKRPEFLKLNPKGKV--PVLV-D------DGE--VL---TDSAA 62 (75)
T ss_dssp EEEETTSHHHHHHH----HHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBS--SEEE-E------TTE--EE---ESHHH
T ss_pred CCCcCCChHHHHHH----HHHHHcCCeEEEeccCcccchhHHHhhcccccc--eEEE-E------CCE--EE---eCHHH
Confidence 36778899987721 2233334 466666665553 455555555677 9887 4 122 11 14578
Q ss_pred HHHHHHhhCCC
Q 013319 301 LKSFCRDHLPR 311 (445)
Q Consensus 301 l~~fi~~~lp~ 311 (445)
|.+++.+..+.
T Consensus 63 I~~yL~~~~~~ 73 (75)
T PF13417_consen 63 IIEYLEERYPG 73 (75)
T ss_dssp HHHHHHHHSTS
T ss_pred HHHHHHHHcCC
Confidence 99999887664
No 431
>COG4371 Predicted membrane protein [Function unknown]
Probab=38.51 E-value=62 Score=30.41 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=8.1
Q ss_pred hhHHHHHHHHhc
Q 013319 235 ESVIEEVANSME 246 (445)
Q Consensus 235 ~p~~~~~a~~l~ 246 (445)
.++..++|..-+
T Consensus 161 k~eL~~iA~~aD 172 (334)
T COG4371 161 KSELQRIAQQAD 172 (334)
T ss_pred HHHHHHHHHhcC
Confidence 667777777654
No 432
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=38.12 E-value=1.4e+02 Score=26.81 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=41.3
Q ss_pred HHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeE-EEEccCCccccc-ccccChhhHHHHHHHHHhhh
Q 013319 346 IWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAI-VGWLSNGEKDVL-KTGISVKDQKSSIHELSKLL 416 (445)
Q Consensus 346 ~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptl-v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 416 (445)
..+..+.+.+....+..+ +.+.+..+...|+|.+.|+- +++.++|..... .+..+.+++.+.+..+.+.|
T Consensus 112 fVk~fie~~~~~~P~~~v-llD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~li~~ll 183 (184)
T TIGR01626 112 FVKSSAKKGKKENPWSQV-VLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVISLVNGLL 183 (184)
T ss_pred HHHHHHHHhcccCCcceE-EECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHHHh
Confidence 344444444434432112 22345678889999999766 678888875544 44456677766555555543
No 433
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=37.99 E-value=1.2e+02 Score=19.90 Aligned_cols=37 Identities=19% Similarity=0.360 Sum_probs=23.1
Q ss_pred hhccceEEEEeecCCChHHH--HHcCCCCCCeEEEEccC
Q 013319 354 YHERLNFYDTEVHDVSDPAV--KKLGVDALPAIVGWLSN 390 (445)
Q Consensus 354 ~~~~~~f~~~~v~~~~~~l~--~~f~V~~~Ptlv~~~~~ 390 (445)
....+.+..+.+........ ..+++..+|+++++..+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 25 LNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred hCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 34556676665554322222 48899999999966544
No 434
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=36.40 E-value=2.1e+02 Score=22.51 Aligned_cols=65 Identities=11% Similarity=0.081 Sum_probs=37.9
Q ss_pred CEEEEEecCCC-ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEEccC-Cc-ccccccccCh
Q 013319 332 PSVLLLSTKKE-TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSN-GE-KDVLKTGISV 402 (445)
Q Consensus 332 ~~vvlF~~~~~-~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~-~~-~~~~~~~~~~ 402 (445)
.++.+|.++.+ ....|+.+|..+++.+.|... +.+ .+ ....-.+ +.+++|++. .. ...|.++.+.
T Consensus 19 ~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~-~G~---~~-~~~~~~~-~~~i~frp~~~~~~~~y~G~~tn 86 (91)
T cd03070 19 NIIGYFESKDSDEYDNFRKVANILRDDCSFLVG-FGD---VT-KPERPPG-DNIIYFPPGHNAPDMVYLGSLTN 86 (91)
T ss_pred eEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEE-ecc---cc-ccccCCC-CCeEEECCCCCCCceEEccCCCC
Confidence 34446655543 478999999999999998544 221 11 1222223 344457775 33 3577777643
No 435
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.39 E-value=69 Score=24.29 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=29.6
Q ss_pred EEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccch----------------hhHhHhCCccCCCcEEEE
Q 013319 222 LFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEA----------------SLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 222 V~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~----------------~lc~~~~I~~~~~Pti~~ 278 (445)
++|+|..|+.|.. ...++.+ .+.+-.|+..... +-.+..|--+. |.|.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl------~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGI--Pall~ 70 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL------NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGI--PALLT 70 (85)
T ss_pred eeeccccCcchHHHHHHHHHc------CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccc--eEEEe
Confidence 7899999999966 4333332 3455555655431 22444555567 88776
No 436
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=36.30 E-value=30 Score=28.46 Aligned_cols=34 Identities=12% Similarity=0.082 Sum_probs=22.5
Q ss_pred EEEECCCCccCCChhHHHHHHHHhcCccEEEEEeCccch
Q 013319 222 LFFYSPSSNRDGYESVIEEVANSMEGALKVGSINCETEA 260 (445)
Q Consensus 222 V~Fyap~C~~C~~~p~~~~~a~~l~~~v~~~~Vdc~~~~ 260 (445)
..|+.++|+.|+.+-.|-+- ..+.+-.+|..+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-----NGIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----cCCceEEEecCCCh
Confidence 46889999999983333321 24667777776654
No 437
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=36.24 E-value=1.3e+02 Score=26.33 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=22.0
Q ss_pred CChHHHHHcCCCCCCeEEEEccCCcc
Q 013319 368 VSDPAVKKLGVDALPAIVGWLSNGEK 393 (445)
Q Consensus 368 ~~~~l~~~f~V~~~Ptlv~~~~~~~~ 393 (445)
..+++..+|.|+..|+++++.++++.
T Consensus 103 ~~~~l~~ky~v~~iP~l~i~~~dG~~ 128 (157)
T KOG2501|consen 103 LIQKLSEKYEVKGIPALVILKPDGTV 128 (157)
T ss_pred HHHHHHHhcccCcCceeEEecCCCCE
Confidence 34789999999999999998887753
No 438
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=35.22 E-value=46 Score=29.51 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=23.9
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcC
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEG 247 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~ 247 (445)
|..|+.+.|+.|-. .+.++++++.+..
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 66889999999999 9999999999843
No 439
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=34.69 E-value=2.7e+02 Score=23.53 Aligned_cols=14 Identities=14% Similarity=-0.043 Sum_probs=11.0
Q ss_pred CCCCeEEEEccCCc
Q 013319 379 DALPAIVGWLSNGE 392 (445)
Q Consensus 379 ~~~Ptlv~~~~~~~ 392 (445)
..+|+++++.++++
T Consensus 78 ~~vPtivFld~~g~ 91 (130)
T cd02960 78 QYVPRIMFVDPSLT 91 (130)
T ss_pred cccCeEEEECCCCC
Confidence 45899998888764
No 440
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=34.65 E-value=2.6e+02 Score=22.93 Aligned_cols=107 Identities=17% Similarity=0.183 Sum_probs=69.4
Q ss_pred ccccChhhHHHHhhc-CCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC--ccEEEEEeCccchhhH----hHhCCccCC
Q 013319 201 IRALNLQVFKKEIVE-KGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG--ALKVGSINCETEASLC----KELGVHRPR 272 (445)
Q Consensus 201 V~~Lt~~~f~~~v~~-~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~--~v~~~~Vdc~~~~~lc----~~~~I~~~~ 272 (445)
+..|+.++.-+.=.+ -+...+|.|--+-.+.-.. .++.+++|+.... .+.|.=||-++.+-+. +-|+|.-.
T Consensus 3 lrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~- 81 (120)
T cd03074 3 LRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLF- 81 (120)
T ss_pred hhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccC-
Confidence 445666664333211 1235777777777777777 8999999999875 7999999999887664 34677543
Q ss_pred CcEEEEeccCCCCCCCeeeecCc---ccHHHHHHHHHhhC
Q 013319 273 SPRIFAYSYKAGDKGSLVEYNEH---LVAKNLKSFCRDHL 309 (445)
Q Consensus 273 ~Pti~~f~~~~~~~g~~~~y~g~---~~~~~l~~fi~~~l 309 (445)
.|.|=+..... ..+.-..-.+. .++++|.+||...|
T Consensus 82 ~PqIGVV~vtd-adSvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 82 RPQIGVVNVTD-ADSVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred CCceeeEeccc-ccceeEecccccccCcHHHHHHHHHhhC
Confidence 38887774322 22323333333 47799999998643
No 441
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=34.14 E-value=78 Score=31.20 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=41.0
Q ss_pred hcCCCcCcccccCCCC-CCCHHHHHHHHHHHHHh-------hCCCCCC----ChHHHHHHHHHHHHHHHcCC
Q 013319 25 AKAKTVDLYKVLGVER-NASQREIQKAFHKLSLQ-------YHPDKNK----NKAAQEKFAEINNAYDILSD 84 (445)
Q Consensus 25 ~~~~~~d~y~vLgv~~-~a~~~~ik~ayr~l~~~-------~hPd~~~----~~~~~~~f~~i~~Ay~~L~d 84 (445)
......+.++-||++. ..+.+|+.+--++++.+ .++|.+. +..-.+.++++.+||+.|.+
T Consensus 77 lNY~R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~ 148 (318)
T PF12725_consen 77 LNYYRPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAE 148 (318)
T ss_pred hhcCCcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 3456778888999998 67888877766555443 3343331 11347789999999998864
No 442
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=33.01 E-value=35 Score=28.77 Aligned_cols=34 Identities=18% Similarity=0.088 Sum_probs=20.0
Q ss_pred EEEEECCCCccCCChhHHHHHHHHhcCccEEEEEeCccc
Q 013319 221 LLFFYSPSSNRDGYESVIEEVANSMEGALKVGSINCETE 259 (445)
Q Consensus 221 lV~Fyap~C~~C~~~p~~~~~a~~l~~~v~~~~Vdc~~~ 259 (445)
+..|+.|+|+.|+.+-.|-+- ..+.+-.+|..++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~-----~gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE-----HDIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-----cCCCcEEeeccCC
Confidence 457889999999883333211 1345555554443
No 443
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=32.59 E-value=89 Score=30.66 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=40.1
Q ss_pred cCCCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCC--ChHHHHHHHHHHHHHHHcC
Q 013319 26 KAKTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNK--NKAAQEKFAEINNAYDILS 83 (445)
Q Consensus 26 ~~~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~~~f~~i~~Ay~~L~ 83 (445)
.....++|+.|||++..-+.+|-+.=...+.+.-|-.-. +|.-.+...++.++...|.
T Consensus 246 d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~a~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l~ 305 (351)
T CHL00185 246 DLQRSDFYAAIGLDARQFDMHVIRKTNESAARLFPVVLDVDNPKFFKYLDQCACANLKLI 305 (351)
T ss_pred hcchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCCHHHHHHHHHHHHHHHHHH
Confidence 356789999999999876666666666677777776532 4555556666666666554
No 444
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=31.61 E-value=29 Score=28.01 Aligned_cols=34 Identities=3% Similarity=-0.047 Sum_probs=21.7
Q ss_pred EEEEECCCCccCCChhHHHHHHHHhcCccEEEEEeCccc
Q 013319 221 LLFFYSPSSNRDGYESVIEEVANSMEGALKVGSINCETE 259 (445)
Q Consensus 221 lV~Fyap~C~~C~~~p~~~~~a~~l~~~v~~~~Vdc~~~ 259 (445)
+..|+.|+|+.|+.+-.|-+. ..+.+-.+|..++
T Consensus 1 i~iy~~~~C~~crka~~~L~~-----~~i~~~~~di~~~ 34 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEA-----RGVAYTFHDYRKD 34 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHH-----cCCCeEEEecccC
Confidence 357889999999984444322 1455556665554
No 445
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=31.14 E-value=2.4e+02 Score=23.00 Aligned_cols=43 Identities=5% Similarity=0.122 Sum_probs=28.7
Q ss_pred hhHHHHHHHHhcCccEEEEEeCccchhhHhHhCCccCCCcEEEEecc
Q 013319 235 ESVIEEVANSMEGALKVGSINCETEASLCKELGVHRPRSPRIFAYSY 281 (445)
Q Consensus 235 ~p~~~~~a~~l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~ 281 (445)
.+.+..+.+.+...-.. .+..-++.+-++|+|+.+ |++++-+.
T Consensus 38 ~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~V--Pa~V~~~~ 80 (113)
T PF09673_consen 38 KPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAV--PAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEc--CEEEEEcC
Confidence 55555555555432111 344457999999999999 99999743
No 446
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=30.17 E-value=63 Score=27.09 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=27.3
Q ss_pred chhhHhHhCCccCCCcEEEEeccCCCCCCCeeeecCcccHHHHHHHH
Q 013319 259 EASLCKELGVHRPRSPRIFAYSYKAGDKGSLVEYNEHLVAKNLKSFC 305 (445)
Q Consensus 259 ~~~lc~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g~~~~~~l~~fi 305 (445)
+..++++++|.++ ||+++- | ..+.|..+.+.|.+.|
T Consensus 118 ~~~~~~~~gi~gt--Pt~~v~-------g--~~~~G~~~~~~l~~~i 153 (154)
T cd03023 118 NRQLARALGITGT--PAFIIG-------D--TVIPGAVPADTLKEAI 153 (154)
T ss_pred HHHHHHHcCCCcC--CeEEEC-------C--EEecCCCCHHHHHHHh
Confidence 4567889999999 998872 3 3577887778877655
No 447
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=30.05 E-value=33 Score=27.95 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=22.0
Q ss_pred EEEECCCCccCCChhHHHHHHHHhcCccEEEEEeCccc
Q 013319 222 LFFYSPSSNRDGYESVIEEVANSMEGALKVGSINCETE 259 (445)
Q Consensus 222 V~Fyap~C~~C~~~p~~~~~a~~l~~~v~~~~Vdc~~~ 259 (445)
..|..|+|+.|+.+-.|-+- ..+.+-.+|..++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~ 34 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-----HGVDYTAIDIVEE 34 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-----cCCceEEecccCC
Confidence 56889999999984343321 2466777776655
No 448
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=30.02 E-value=50 Score=30.83 Aligned_cols=55 Identities=18% Similarity=0.026 Sum_probs=41.5
Q ss_pred ceEEEEeecCCChHHHHHcCCCCCCeEEEEccCCcccccccccChhhHHHHHHHHHhhh
Q 013319 358 LNFYDTEVHDVSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGISVKDQKSSIHELSKLL 416 (445)
Q Consensus 358 ~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 416 (445)
+.+++++ +++.|.-+|-|+.+|||+..+ ++...-|.+.+++.++++++...+.-.
T Consensus 75 va~VDvt---~npgLsGRF~vtaLptIYHvk-DGeFrrysgaRdk~dfisf~~~r~w~~ 129 (248)
T KOG0913|consen 75 VAKVDVT---TNPGLSGRFLVTALPTIYHVK-DGEFRRYSGARDKNDFISFEEHREWQS 129 (248)
T ss_pred EEEEEEE---eccccceeeEEEecceEEEee-ccccccccCcccchhHHHHHHhhhhhc
Confidence 3444443 668899999999999998544 666778899999999988877665433
No 449
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=29.48 E-value=2.3e+02 Score=20.84 Aligned_cols=69 Identities=13% Similarity=0.176 Sum_probs=35.0
Q ss_pred EEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccc----hhhHhHhCCccCCCcEEEEeccCCCCCCCeeeecCcc
Q 013319 222 LFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETE----ASLCKELGVHRPRSPRIFAYSYKAGDKGSLVEYNEHL 296 (445)
Q Consensus 222 V~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~----~~lc~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g~~ 296 (445)
..++.++|+.|.+ .-..++. .+.+-.+++... .++-+..+-..+ |+|+.- .++ ..-+
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~------gi~y~~~~v~~~~~~~~~~~~~~p~~~v--P~l~~~-----~~~-~~l~---- 64 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL------ELDVILYPCPKGSPKRDKFLEKGGKVQV--PYLVDP-----NTG-VQMF---- 64 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc------CCcEEEEECCCChHHHHHHHHhCCCCcc--cEEEeC-----CCC-eEEE----
Confidence 4677789999987 4333322 233333454432 223232344566 987541 112 1112
Q ss_pred cHHHHHHHHHhh
Q 013319 297 VAKNLKSFCRDH 308 (445)
Q Consensus 297 ~~~~l~~fi~~~ 308 (445)
....|.+|+.+.
T Consensus 65 es~~I~~yL~~~ 76 (77)
T cd03041 65 ESADIVKYLFKT 76 (77)
T ss_pred cHHHHHHHHHHh
Confidence 346788887653
No 450
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=29.32 E-value=1.3e+02 Score=29.44 Aligned_cols=57 Identities=9% Similarity=0.160 Sum_probs=37.4
Q ss_pred cCCCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCC--ChHHHHHHHHHHHHHHHc
Q 013319 26 KAKTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNK--NKAAQEKFAEINNAYDIL 82 (445)
Q Consensus 26 ~~~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~~~f~~i~~Ay~~L 82 (445)
.....++|+.|||++..-+.+|-+.=...+.+.-|-.-. +|.-.+...++.++...|
T Consensus 240 d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l 298 (337)
T TIGR02029 240 DHQRPGFYEALGLDATDFDLQVFRNTNETSGRIFPMTLNTEHPRFRRLLDRMAGYSEKI 298 (337)
T ss_pred hcccHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCCHHHHHHHHHHHHHHHHH
Confidence 356789999999999776666655566667777776532 344445555555555544
No 451
>PHA03075 glutaredoxin-like protein; Provisional
Probab=29.31 E-value=42 Score=27.66 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=24.7
Q ss_pred EEEEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEe
Q 013319 219 TWLLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSIN 255 (445)
Q Consensus 219 ~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vd 255 (445)
.+||.|-.|.|+-|.. ....+++..+| .+.+||
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY----~ilrVN 36 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEY----DILRVN 36 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccc----cEEEEE
Confidence 3799999999999999 77776665554 355555
No 452
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=29.11 E-value=1.2e+02 Score=24.66 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=33.5
Q ss_pred CCcEEEEEEECCCCccCCChhHHHHHHHHhcC-ccEEEEEeCccc
Q 013319 216 KGMTWLLFFYSPSSNRDGYESVIEEVANSMEG-ALKVGSINCETE 259 (445)
Q Consensus 216 ~~~~~lV~Fyap~C~~C~~~p~~~~~a~~l~~-~v~~~~Vdc~~~ 259 (445)
++++.||.=-|..|+.-..-..++++.++++. .+.|.++=|.+.
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~qy~~L~~L~~ky~~~gl~ILaFPcnqF 64 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTKQYKQLNELYEKYKDKGLEILAFPCNQF 64 (108)
T ss_dssp TTSEEEEEEEESSSTTHHHHHHHHHHHHHHGGGTEEEEEEEBSTT
T ss_pred CCCEEEEEecccccCCccccHHHHHHHHHHhcCCeEEEeeehHHh
Confidence 46788888889988865455577777788874 788999989863
No 453
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=28.96 E-value=91 Score=21.47 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=27.3
Q ss_pred EEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccchh--hHhHhCCccCCCcEEEE
Q 013319 222 LFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETEAS--LCKELGVHRPRSPRIFA 278 (445)
Q Consensus 222 V~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~~~--lc~~~~I~~~~~Pti~~ 278 (445)
..|+.++|+.|.+ .-.++.. +-.+.+..++-..... +-+..+-..+ |++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~--P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEK----GLPYELVPVDLGEGEQEEFLALNPLGKV--PVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHc----CCCcEEEEeCCCCCCCHHHHhcCCCCCC--CEEEE
Confidence 3678899999987 4433332 1134444444333222 3333445566 87765
No 454
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=28.17 E-value=1.2e+02 Score=27.60 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=40.1
Q ss_pred eeccccccchhhhccCCCCEEEEEecCCCC------hHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEEEE
Q 013319 314 KRISLNRIEFTFDAKARLPSVLLLSTKKET------PIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIVGW 387 (445)
Q Consensus 314 ~~i~~~~~~~~~~~~~~~~~vvlF~~~~~~------~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv~~ 387 (445)
..|+..+............|||+---+... ...+..||..|.. ++|+.+.. ..-...|-=.++|||+||
T Consensus 94 ~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~a----t~cIpNYPe~nlPTl~VY 168 (240)
T KOG3170|consen 94 FPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPA----TTCIPNYPESNLPTLLVY 168 (240)
T ss_pred eeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEeccc----ccccCCCcccCCCeEEEe
Confidence 334444333233334445677765433333 4557777777763 67855421 222334555568999988
Q ss_pred ccCC
Q 013319 388 LSNG 391 (445)
Q Consensus 388 ~~~~ 391 (445)
..+.
T Consensus 169 ~~G~ 172 (240)
T KOG3170|consen 169 HHGA 172 (240)
T ss_pred ecch
Confidence 8754
No 455
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=28.12 E-value=83 Score=29.77 Aligned_cols=41 Identities=17% Similarity=0.094 Sum_probs=28.2
Q ss_pred CChHHHHHcCCCCCCeEEEEccCCcccccccccChhhHHHH
Q 013319 368 VSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGISVKDQKSS 408 (445)
Q Consensus 368 ~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~~~~~~~ 408 (445)
.+..+.+++||++.|+|++-..++...+..+-.+.++|.+.
T Consensus 207 ~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~ 247 (251)
T PRK11657 207 DNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEI 247 (251)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHH
Confidence 35678999999999999955545655556555555555433
No 456
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=28.09 E-value=1.5e+02 Score=28.78 Aligned_cols=57 Identities=12% Similarity=0.208 Sum_probs=37.7
Q ss_pred cCCCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCC--ChHHHHHHHHHHHHHHHc
Q 013319 26 KAKTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNK--NKAAQEKFAEINNAYDIL 82 (445)
Q Consensus 26 ~~~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~~~f~~i~~Ay~~L 82 (445)
.....++|+.|||++..-+.+|-+.=...+.+.-|-.-. +|.-.+...++.++...|
T Consensus 230 d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l 288 (323)
T cd01047 230 DHQRPDFYEALGLDTTEFDMHVIRETNETAARVFPAVLDVDNPEFRRGLDRLVDLNLKL 288 (323)
T ss_pred ccchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCChHHHHHHHHHHHHHHHH
Confidence 456789999999999876666666666677777776532 344444555555555444
No 457
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=27.35 E-value=61 Score=29.69 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=26.5
Q ss_pred HHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEE
Q 013319 347 WRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIV 385 (445)
Q Consensus 347 ~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv 385 (445)
+..++..++..+.| +....|.++|+|+..|+++
T Consensus 158 ~~~l~~~l~~~vYf------dQ~g~Lt~rF~I~~VPavV 190 (202)
T TIGR02743 158 VNELEKRLDSRIYF------DQHGKLTQKFGIKHVPARV 190 (202)
T ss_pred HHHHHHHhCCceEE------cCCchHhhccCceeeceEE
Confidence 77778888766666 1357799999999999998
No 458
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=27.35 E-value=80 Score=27.93 Aligned_cols=42 Identities=14% Similarity=0.141 Sum_probs=29.0
Q ss_pred CCcEEEEEEECCCCcc-CCC-hhHHHHHHHHhcC---ccEEEEEeCc
Q 013319 216 KGMTWLLFFYSPSSNR-DGY-ESVIEEVANSMEG---ALKVGSINCE 257 (445)
Q Consensus 216 ~~~~~lV~Fyap~C~~-C~~-~p~~~~~a~~l~~---~v~~~~Vdc~ 257 (445)
.++++||.|.=..|+. |.. ...+.++.+.+.. .+.+..|.++
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 4678899998889987 887 7777777776653 4555555554
No 459
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=27.25 E-value=1e+02 Score=26.14 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=23.8
Q ss_pred hHHHHHcCCCCCCeEEEEccCCcccccccccChhhHHHHHH
Q 013319 370 DPAVKKLGVDALPAIVGWLSNGEKDVLKTGISVKDQKSSIH 410 (445)
Q Consensus 370 ~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (445)
...+++.+|++.||+++ |+.. +.+..+.+++...|.
T Consensus 126 ~~~~~~~~i~~tPt~~i---nG~~--~~~~~~~~~l~~~Id 161 (162)
T PF13462_consen 126 SQLARQLGITGTPTFFI---NGKY--VVGPYTIEELKELID 161 (162)
T ss_dssp HHHHHHHT-SSSSEEEE---TTCE--EETTTSHHHHHHHHH
T ss_pred HHHHHHcCCccccEEEE---CCEE--eCCCCCHHHHHHHHc
Confidence 45778999999999996 4432 455566666655543
No 460
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=26.86 E-value=2.1e+02 Score=23.87 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=24.0
Q ss_pred CChHHHHHcCCC---------CCCeEEEEccCCccccc
Q 013319 368 VSDPAVKKLGVD---------ALPAIVGWLSNGEKDVL 396 (445)
Q Consensus 368 ~~~~l~~~f~V~---------~~Ptlv~~~~~~~~~~~ 396 (445)
.+..+.+.|++. .+|+++++.+++.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~ 130 (146)
T PF08534_consen 93 PDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYR 130 (146)
T ss_dssp TTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEE
T ss_pred hHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEE
Confidence 557899999998 99999999998875543
No 461
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=26.77 E-value=68 Score=29.54 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=25.8
Q ss_pred HHHHHHHhhccceEEEEeecCCChHHHHHcCCCCCCeEE
Q 013319 347 WRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDALPAIV 385 (445)
Q Consensus 347 ~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~Ptlv 385 (445)
+.+++..++..+.| +....|.++|+|+..|+++
T Consensus 156 ~~~~~~~l~~~vYf------dQ~G~Lt~rF~I~~VPAvV 188 (209)
T PRK13738 156 IPEMSKALDSRIYF------DQNGVLCQRFGIDQVPARV 188 (209)
T ss_pred HHHHHHHhCCceEE------cCcchHHHhcCCeeeceEE
Confidence 56777777766666 1346799999999999998
No 462
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=26.24 E-value=48 Score=30.93 Aligned_cols=42 Identities=14% Similarity=0.140 Sum_probs=34.3
Q ss_pred CCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC----ccEEEEEeCc
Q 013319 216 KGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG----ALKVGSINCE 257 (445)
Q Consensus 216 ~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~----~v~~~~Vdc~ 257 (445)
.+.+.||-+-..+|..|.. +..++.|-.+|.. .|.|..||-.
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 4578999999999999999 9999999888863 5777777743
No 463
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=26.16 E-value=93 Score=22.44 Aligned_cols=18 Identities=0% Similarity=-0.190 Sum_probs=12.7
Q ss_pred EEEECCCCccCCC-hhHHH
Q 013319 222 LFFYSPSSNRDGY-ESVIE 239 (445)
Q Consensus 222 V~Fyap~C~~C~~-~p~~~ 239 (445)
..++.++|++|++ .-.+.
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~ 20 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAG 20 (71)
T ss_pred ceEecCCCcHhHHHHHHHH
Confidence 3577889999988 54433
No 464
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=26.04 E-value=95 Score=27.37 Aligned_cols=35 Identities=6% Similarity=0.086 Sum_probs=27.5
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEe
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSIN 255 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vd 255 (445)
|+.||...|+.|-. .+.++++.+.+.+ .|.+--+.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 67899999999999 9999999999844 34444443
No 465
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=26.04 E-value=1.5e+02 Score=21.31 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=28.6
Q ss_pred EEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCcc----chhhHhHhCCccCCCcEEEE
Q 013319 222 LFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCET----EASLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 222 V~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~----~~~lc~~~~I~~~~~Pti~~ 278 (445)
..|+.++|+.|++ .-..++. +-.+....|+..+ .+++.+......+ |++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~----gi~~e~~~i~~~~~~~~~~~~~~~~p~~~v--P~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL----GLELNLKEVNLMKGEHLKPEFLKLNPQHTV--PTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc----CCCCEEEEecCccCCcCCHHHHhhCcCCCC--CEEEE
Confidence 4688999999976 4333322 2134455555322 2445554445567 98853
No 466
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=25.87 E-value=80 Score=29.52 Aligned_cols=39 Identities=26% Similarity=0.266 Sum_probs=27.3
Q ss_pred CChHHHHHcCCCCCCeEEEEccCCcccccccccChhhHHHHHH
Q 013319 368 VSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGISVKDQKSSIH 410 (445)
Q Consensus 368 ~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (445)
.+.++++++||++.|+++ +. |+. .+.+-.+.+++..++.
T Consensus 190 ~~~~la~~lgi~gTPtiv-~~-~G~--~~~G~~~~~~L~~~l~ 228 (232)
T PRK10877 190 DHYALGVQFGVQGTPAIV-LS-NGT--LVPGYQGPKEMKAFLD 228 (232)
T ss_pred HhHHHHHHcCCccccEEE-Ec-CCe--EeeCCCCHHHHHHHHH
Confidence 568899999999999998 43 332 3445556666665554
No 467
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=25.77 E-value=1.1e+02 Score=30.04 Aligned_cols=58 Identities=14% Similarity=0.233 Sum_probs=38.9
Q ss_pred cCCCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCC--ChHHHHHHHHHHHHHHHcC
Q 013319 26 KAKTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNK--NKAAQEKFAEINNAYDILS 83 (445)
Q Consensus 26 ~~~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~~~f~~i~~Ay~~L~ 83 (445)
.....++|+.|||++..-+.+|-+.=...+.+.-|-.-. +|.-.+...++.++...|.
T Consensus 250 d~~R~~Fy~alGlD~~~yD~~Vi~~Tne~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l~ 309 (355)
T PRK13654 250 DHERPDFYEALGLDAREYDQEVIRKTNETSARVFPVVLDVDDPRFYARLERCVENNEKLR 309 (355)
T ss_pred cccchHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCChHHHHHHHHHHHHHHHHH
Confidence 456789999999999876666666666777777776532 3444455555555555443
No 468
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=25.68 E-value=2.1e+02 Score=26.18 Aligned_cols=54 Identities=11% Similarity=0.237 Sum_probs=33.0
Q ss_pred EEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCcc--c----------------hhhHhHhCCccCCCcEEEE
Q 013319 223 FFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCET--E----------------ASLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 223 ~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~--~----------------~~lc~~~~I~~~~~Pti~~ 278 (445)
+|.|-.|..|-. ...+.+++.+ . .|...+..++- . +..++.++...+.||.+++
T Consensus 4 LFTSQGCsSCPpAD~~L~~l~~~-~-~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV 76 (202)
T PF06764_consen 4 LFTSQGCSSCPPADRLLSELAAR-P-DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV 76 (202)
T ss_dssp EEE-TT-TT-HHHHHHHHHHHHH-T-SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE
T ss_pred EecCCCCCCCcHHHHHHHHhhcC-C-CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE
Confidence 477778999999 8888888887 3 44454555443 1 4567778888888999988
No 469
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=25.38 E-value=1.5e+02 Score=21.11 Aligned_cols=51 Identities=8% Similarity=0.076 Sum_probs=28.3
Q ss_pred EEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCcc----chhhHhHhCCccCCCcEEEE
Q 013319 222 LFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCET----EASLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 222 V~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~----~~~lc~~~~I~~~~~Pti~~ 278 (445)
..|+.++|+.|++ .-..++. +-.+....|+... .+.+.+...-..+ |++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~----~l~~~~~~v~~~~~~~~~~~~~~~~p~~~v--P~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEK----GIDVPLVTVDLAAGEQRSPEFLAKNPAGTV--PVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHc----CCCceEEEeecccCccCCHHHHhhCCCCCC--CEEEe
Confidence 4678899999988 5443332 1134444555322 2334444444566 98875
No 470
>PRK12559 transcriptional regulator Spx; Provisional
Probab=25.33 E-value=55 Score=27.63 Aligned_cols=18 Identities=6% Similarity=0.086 Sum_probs=13.7
Q ss_pred EEEEECCCCccCCChhHH
Q 013319 221 LLFFYSPSSNRDGYESVI 238 (445)
Q Consensus 221 lV~Fyap~C~~C~~~p~~ 238 (445)
++.|+.|+|+.|+.+-.|
T Consensus 2 i~iY~~~~C~~crkA~~~ 19 (131)
T PRK12559 2 VVLYTTASCASCRKAKAW 19 (131)
T ss_pred EEEEeCCCChHHHHHHHH
Confidence 467889999999884333
No 471
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=25.01 E-value=1e+02 Score=26.67 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=15.4
Q ss_pred ChHHHHHcCCCCCCeEEE
Q 013319 369 SDPAVKKLGVDALPAIVG 386 (445)
Q Consensus 369 ~~~l~~~f~V~~~Ptlv~ 386 (445)
+..+++++||.+.||+++
T Consensus 132 ~~~~~~~~gi~gTPt~iI 149 (178)
T cd03019 132 AEKLAKKYKITGVPAFVV 149 (178)
T ss_pred HHHHHHHcCCCCCCeEEE
Confidence 456788999999999996
No 472
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=25.00 E-value=2e+02 Score=24.31 Aligned_cols=26 Identities=8% Similarity=0.171 Sum_probs=21.2
Q ss_pred EeCccchhhHhHhCCccCCCcEEEEecc
Q 013319 254 INCETEASLCKELGVHRPRSPRIFAYSY 281 (445)
Q Consensus 254 Vdc~~~~~lc~~~~I~~~~~Pti~~f~~ 281 (445)
.+..-++.+-++|+|+.+ |++++-+.
T Consensus 55 ~~v~IdP~lF~~f~I~~V--Pa~V~~~~ 80 (130)
T TIGR02742 55 SGVQIDPQWFKQFDITAV--PAFVVVKD 80 (130)
T ss_pred CcEEEChHHHhhcCceEc--CEEEEECC
Confidence 344457999999999999 99999843
No 473
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=24.75 E-value=4.4e+02 Score=23.42 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=18.2
Q ss_pred ccccccChhhHHHHHHHHHhhhhhh
Q 013319 395 VLKTGISVKDQKSSIHELSKLLDGL 419 (445)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (445)
+..+..+.+|+..++..+...|.+|
T Consensus 150 vitGaks~~~~~~a~~~i~p~L~~~ 174 (174)
T cd04516 150 VLTGAKSREEIYQAFENIYPILLQF 174 (174)
T ss_pred EEEecCCHHHHHHHHHHHHHHHhhC
Confidence 4456677789988888887776543
No 474
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=24.69 E-value=2.3e+02 Score=22.86 Aligned_cols=50 Identities=14% Similarity=0.255 Sum_probs=24.7
Q ss_pred CccchhHHHHHHHHHHHHHHHhhhcC-CCcCcccccCCCCCCCHHHHHHHH
Q 013319 2 QSSKMKVRFALSIFLFSTLLILNAKA-KTVDLYKVLGVERNASQREIQKAF 51 (445)
Q Consensus 2 ~~~~~k~~~~~~~~~~~~~~~~~~~~-~~~d~y~vLgv~~~a~~~~ik~ay 51 (445)
.|+++++.++++++++.+........ .....|..--|.++-|.-.|-+.|
T Consensus 4 ~~~~~~~~ii~~~l~~~~~~~~~~~~~~~~~~~~~~tV~~GDTLW~IA~~y 54 (103)
T PRK14125 4 KESKIHVSIFFVLTALVLLIFVYATVPVDKNQYVEITVQEGDTLWALADQY 54 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccCCCCcEEEEECCCCCHHHHHHHh
Confidence 35555554444333333333322222 233445555688887877665544
No 475
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=24.44 E-value=1.1e+02 Score=27.92 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=15.2
Q ss_pred ChHHHHHcCCCCCCeEEE
Q 013319 369 SDPAVKKLGVDALPAIVG 386 (445)
Q Consensus 369 ~~~l~~~f~V~~~Ptlv~ 386 (445)
+....+++||++.|++++
T Consensus 156 ~~~~a~~~gI~gtPtfiI 173 (207)
T PRK10954 156 QEKAAADLQLRGVPAMFV 173 (207)
T ss_pred HHHHHHHcCCCCCCEEEE
Confidence 356788999999999995
No 476
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.79 E-value=1e+02 Score=25.71 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=29.8
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 013319 32 LYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN 65 (445)
Q Consensus 32 ~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~~ 65 (445)
.-.||+|++..+.++|.+.|..|-....+.+...
T Consensus 61 a~qILnV~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 61 AQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred HhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 3479999999999999999999999988887754
No 477
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=23.51 E-value=2.2e+02 Score=22.88 Aligned_cols=52 Identities=21% Similarity=0.413 Sum_probs=35.3
Q ss_pred CCCCCC-CHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHcCCHHHHHHhh-hcCC
Q 013319 37 GVERNA-SQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYD-LYGD 96 (445)
Q Consensus 37 gv~~~a-~~~~ik~ayr~l~~~~hPd~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd-~~g~ 96 (445)
|++|+. ...+|-+.+..++..+++. ..+.+..|.+.| +.||.-+..|| .++.
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~~------~~~~~~~l~~~y--~~~~~~~~~~~~~~~~ 104 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTGG------DPELLRGLAQMY--VEDPRFAAMYDKKFGP 104 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS---------HHHHHHHHHHT--TSTHHHHHHHG-GGST
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCC------CHHHHHHHHHHH--HcCHHHHhhccccCCH
Confidence 555554 3556777888888877761 256888899988 78999999999 5543
No 478
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=23.32 E-value=88 Score=29.07 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=26.6
Q ss_pred CChHHHHHcCCCCCCeEEEEccCCcccccccccChhhHHHHHHH
Q 013319 368 VSDPAVKKLGVDALPAIVGWLSNGEKDVLKTGISVKDQKSSIHE 411 (445)
Q Consensus 368 ~~~~l~~~f~V~~~Ptlv~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (445)
.+..+..++||++.||+++- ++ .+.+..+.+++...+..
T Consensus 203 ~~~~~a~~~gv~gTPt~~v~--~~---~~~g~~~~~~l~~~i~~ 241 (244)
T COG1651 203 KNYKLAQQLGVNGTPTFIVN--GK---LVPGLPDLDELKAIIDE 241 (244)
T ss_pred HHHHHHHhcCCCcCCeEEEC--Ce---eecCCCCHHHHHHHHHH
Confidence 45678999999999999842 22 55565666666555543
No 479
>KOG3499 consensus 60S ribosomal protein L38 [Translation, ribosomal structure and biogenesis]
Probab=22.98 E-value=53 Score=23.65 Aligned_cols=11 Identities=45% Similarity=0.797 Sum_probs=7.5
Q ss_pred chhcc-cccccc
Q 013319 434 HIVIQ-RRSRYL 444 (445)
Q Consensus 434 ~~~~~-~~~~~~ 444 (445)
+.-|+ ||||+|
T Consensus 31 ~~KFKvRcsryL 42 (69)
T KOG3499|consen 31 NVKFKVRCSRYL 42 (69)
T ss_pred ceeEEEEeeeee
Confidence 34444 999987
No 480
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=22.97 E-value=2.9e+02 Score=28.21 Aligned_cols=87 Identities=14% Similarity=0.160 Sum_probs=53.0
Q ss_pred cCCcEEEEEEECCCCccCCC-h-hHHHHHH--HHhcCccEEEEEeCccc--hhhHhHhCCccCCCcEEEEeccCCCCCCC
Q 013319 215 EKGMTWLLFFYSPSSNRDGY-E-SVIEEVA--NSMEGALKVGSINCETE--ASLCKELGVHRPRSPRIFAYSYKAGDKGS 288 (445)
Q Consensus 215 ~~~~~~lV~Fyap~C~~C~~-~-p~~~~~a--~~l~~~v~~~~Vdc~~~--~~lc~~~~I~~~~~Pti~~f~~~~~~~g~ 288 (445)
+.+..+||.|.+-....... . -.|.+.. +.+...+.-.+|+.... ..+..-|.+..+ |+++++ ...|.
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~v--Ps~ffI----g~sGt 89 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSV--PSIFFI----GFSGT 89 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccc--cceeee----cCCCc
Confidence 34456888888877777666 3 3555432 22222333344443322 345556788888 999998 34676
Q ss_pred eee-ecCcccHHHHHHHHHh
Q 013319 289 LVE-YNEHLVAKNLKSFCRD 307 (445)
Q Consensus 289 ~~~-y~g~~~~~~l~~fi~~ 307 (445)
++. -.|-.++++|..-|.+
T Consensus 90 pLevitg~v~adeL~~~i~K 109 (506)
T KOG2507|consen 90 PLEVITGFVTADELASSIEK 109 (506)
T ss_pred eeEEeeccccHHHHHHHHHH
Confidence 665 5677777888776654
No 481
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=22.89 E-value=1e+02 Score=27.10 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=28.1
Q ss_pred chhhHhHhCCccCCCcEEEEeccCCCCCCCeeeecCcccHHHHHHHH
Q 013319 259 EASLCKELGVHRPRSPRIFAYSYKAGDKGSLVEYNEHLVAKNLKSFC 305 (445)
Q Consensus 259 ~~~lc~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g~~~~~~l~~fi 305 (445)
+...+.++||.++ |++++ +|+ ..+.|....+.|.+.|
T Consensus 156 ~~~~a~~~gv~Gv--P~~vv-------~g~-~~~~G~~~~~~l~~~l 192 (193)
T PF01323_consen 156 DTAEARQLGVFGV--PTFVV-------NGK-YRFFGADRLDELEDAL 192 (193)
T ss_dssp HHHHHHHTTCSSS--SEEEE-------TTT-EEEESCSSHHHHHHHH
T ss_pred HHHHHHHcCCccc--CEEEE-------CCE-EEEECCCCHHHHHHHh
Confidence 4567888999999 99998 233 5677877777777665
No 482
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=22.89 E-value=1.1e+02 Score=22.39 Aligned_cols=73 Identities=12% Similarity=0.066 Sum_probs=36.7
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCccchhhHhHhCCccCCCcEEEEeccCCCCCCCeeeecCcccH
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCETEASLCKELGVHRPRSPRIFAYSYKAGDKGSLVEYNEHLVA 298 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~f~~~~~~~g~~~~y~g~~~~ 298 (445)
+..|+.+.|+.|++ .-...+ ++ .+.+..+|-.....+ +.-+-..+ |+|..=.. .++. +-+ ..
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~-----~gi~y~~~~~~~~~~~~~-~~~~~~~v--P~l~~~~~---~~~~-~l~----eS 65 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDY-----HGIPYEVVEVNPVSRKEI-KWSSYKKV--PILRVESG---GDGQ-QLV----DS 65 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHH-----CCCceEEEECCchhHHHH-HHhCCCcc--CEEEECCC---CCcc-EEE----cH
Confidence 45688899999988 522222 22 233333332222233 33344567 98875210 0121 111 34
Q ss_pred HHHHHHHHhhC
Q 013319 299 KNLKSFCRDHL 309 (445)
Q Consensus 299 ~~l~~fi~~~l 309 (445)
..|.+|+.+.+
T Consensus 66 ~~I~~yL~~~~ 76 (77)
T cd03040 66 SVIISTLKTYL 76 (77)
T ss_pred HHHHHHHHHHc
Confidence 67888887654
No 483
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=22.84 E-value=78 Score=25.83 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=20.6
Q ss_pred EEEEECCCCccCCC-hhHHHHHHHHhcCccEEEEEeCccc
Q 013319 221 LLFFYSPSSNRDGY-ESVIEEVANSMEGALKVGSINCETE 259 (445)
Q Consensus 221 lV~Fyap~C~~C~~-~p~~~~~a~~l~~~v~~~~Vdc~~~ 259 (445)
+..|+.|+|+.|+. ...+++ ..+.+-.+|..++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~------~gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEE------HQIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHH------CCCceEEEecCCC
Confidence 34678899999998 433332 1355656665544
No 484
>PLN00062 TATA-box-binding protein; Provisional
Probab=22.53 E-value=3.7e+02 Score=24.09 Aligned_cols=28 Identities=14% Similarity=0.279 Sum_probs=22.3
Q ss_pred ccccccChhhHHHHHHHHHhhhhhhhhc
Q 013319 395 VLKTGISVKDQKSSIHELSKLLDGLKKR 422 (445)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (445)
+..+..+.+|+..++..+...|.++-+.
T Consensus 150 vitGaks~~~~~~ai~~i~p~L~~~~~~ 177 (179)
T PLN00062 150 VITGAKVREEIYTAFENIYPVLTEFRKR 177 (179)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHHhccC
Confidence 4456777899999999999998887744
No 485
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=22.15 E-value=1.7e+02 Score=28.75 Aligned_cols=57 Identities=11% Similarity=0.165 Sum_probs=36.2
Q ss_pred cCCCcCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCC--ChHHHHHHHHHHHHHHHc
Q 013319 26 KAKTVDLYKVLGVERNASQREIQKAFHKLSLQYHPDKNK--NKAAQEKFAEINNAYDIL 82 (445)
Q Consensus 26 ~~~~~d~y~vLgv~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~~~f~~i~~Ay~~L 82 (445)
.....++|+.|||++..-+.+|-+.=...+.+.-|-.-. +|.-.+...++.++...|
T Consensus 246 d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l 304 (357)
T PLN02508 246 DHQRTAFYEGIGLNTKQFNMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVVINQKL 304 (357)
T ss_pred ccchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCCHHHHHHHHHHHHHHHHH
Confidence 356789999999999776666655566667777776532 344444444444444444
No 486
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=21.88 E-value=2.8e+02 Score=22.07 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=19.6
Q ss_pred CChHHHHHcCCC------CCCeEEEEccCCcc
Q 013319 368 VSDPAVKKLGVD------ALPAIVGWLSNGEK 393 (445)
Q Consensus 368 ~~~~l~~~f~V~------~~Ptlv~~~~~~~~ 393 (445)
.+..+++.|++. .+|+++++.+++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I 121 (124)
T PF00578_consen 90 PDGELAKAFGIEDEKDTLALPAVFLIDPDGKI 121 (124)
T ss_dssp TTSHHHHHTTCEETTTSEESEEEEEEETTSBE
T ss_pred cchHHHHHcCCccccCCceEeEEEEECCCCEE
Confidence 456788888888 78888877776653
No 487
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=21.83 E-value=5.8e+02 Score=22.81 Aligned_cols=44 Identities=18% Similarity=0.153 Sum_probs=28.4
Q ss_pred CCChHHHHHcCC----CCC--CeEEEEccCCccc---cc--ccccChhhHHHHHH
Q 013319 367 DVSDPAVKKLGV----DAL--PAIVGWLSNGEKD---VL--KTGISVKDQKSSIH 410 (445)
Q Consensus 367 ~~~~~l~~~f~V----~~~--Ptlv~~~~~~~~~---~~--~~~~~~~~~~~~~~ 410 (445)
+.+..+++.|+| .++ |+.+++.+++.+. ++ ..+.+.+++...++
T Consensus 99 D~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~ 153 (187)
T PRK10382 99 DPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIK 153 (187)
T ss_pred cCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 356889999998 345 9999888887643 22 23345556644443
No 488
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=21.31 E-value=15 Score=28.44 Aligned_cols=42 Identities=12% Similarity=0.261 Sum_probs=32.5
Q ss_pred hhHHHHHHHH-hcCccEEEEEeCccchhhHhHhCCccCCCcEEEE
Q 013319 235 ESVIEEVANS-MEGALKVGSINCETEASLCKELGVHRPRSPRIFA 278 (445)
Q Consensus 235 ~p~~~~~a~~-l~~~v~~~~Vdc~~~~~lc~~~~I~~~~~Pti~~ 278 (445)
......+.+. +.+.+.+-.||+.+++.+++.++|-.. ||++-
T Consensus 15 ~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAt--PtLik 57 (82)
T PF07689_consen 15 IENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVAT--PTLIK 57 (82)
T ss_dssp HHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECH--HHHHT
T ss_pred HHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeec--ceEee
Confidence 3344445444 344799999999999999999999999 99754
No 489
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=21.15 E-value=3.1e+02 Score=27.22 Aligned_cols=10 Identities=40% Similarity=0.654 Sum_probs=4.6
Q ss_pred HHHhhCCCCC
Q 013319 54 LSLQYHPDKN 63 (445)
Q Consensus 54 l~~~~hPd~~ 63 (445)
++.---||+.
T Consensus 297 ~~igrvPDRG 306 (465)
T KOG3973|consen 297 LSIGRVPDRG 306 (465)
T ss_pred cccccCCCCC
Confidence 3333346664
No 490
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=20.88 E-value=4.7e+02 Score=21.34 Aligned_cols=48 Identities=17% Similarity=0.044 Sum_probs=30.7
Q ss_pred ChHHHHHHHHHhhccceEEEEeecCCChHHHHHcCCCCC---------CeEEEEccCCccc
Q 013319 343 TPIIWRVLSGMYHERLNFYDTEVHDVSDPAVKKLGVDAL---------PAIVGWLSNGEKD 394 (445)
Q Consensus 343 ~~~~~~~lA~~~~~~~~f~~~~v~~~~~~l~~~f~V~~~---------Ptlv~~~~~~~~~ 394 (445)
.+....+.+..+. +.|.. +.+.+..+.+.|++... |+.+++.+++...
T Consensus 67 ~~~~~~~~~~~~~--~~~~~--l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~ 123 (140)
T cd03017 67 SVESHAKFAEKYG--LPFPL--LSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIV 123 (140)
T ss_pred CHHHHHHHHHHhC--CCceE--EECCccHHHHHhCCccccccccCCcceeEEEECCCCEEE
Confidence 3455555555443 34422 33456789999999987 8988888877543
No 491
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.47 E-value=4.8e+02 Score=23.14 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=57.8
Q ss_pred CCcEEEEEEECCCCccCCC-hhHHHHHHHHhcC-ccEEEEEeCccc--------h----hhHhHhCCccCCCcEEEEecc
Q 013319 216 KGMTWLLFFYSPSSNRDGY-ESVIEEVANSMEG-ALKVGSINCETE--------A----SLCKELGVHRPRSPRIFAYSY 281 (445)
Q Consensus 216 ~~~~~lV~Fyap~C~~C~~-~p~~~~~a~~l~~-~v~~~~Vdc~~~--------~----~lc~~~~I~~~~~Pti~~f~~ 281 (445)
.++++||.=-|+.|+.-.. -..+.++-++|+. .+.|.+.=|.+. . -+|.+++. .+-+|.
T Consensus 33 rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~~~------~f~if~- 105 (171)
T KOG1651|consen 33 RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKVRYGA------EFPIFQ- 105 (171)
T ss_pred CCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHhccCC------CCccEe-
Confidence 5678888888999999886 7799999999976 789999999763 1 23444543 233442
Q ss_pred CCCCCCCeeeecCcccHHHHHHHHHhhCCC
Q 013319 282 KAGDKGSLVEYNEHLVAKNLKSFCRDHLPR 311 (445)
Q Consensus 282 ~~~~~g~~~~y~g~~~~~~l~~fi~~~lp~ 311 (445)
.+.-+|. .++-|-+|+.+.-+.
T Consensus 106 -------KidVNG~-~~~PlykfLK~~~~~ 127 (171)
T KOG1651|consen 106 -------KIDVNGD-NADPLYKFLKKVKGG 127 (171)
T ss_pred -------EEecCCC-CCchHHHHHhhcCCC
Confidence 1455565 677888999876653
Done!