Query 013320
Match_columns 445
No_of_seqs 105 out of 117
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 08:22:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013320.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013320hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nc8a_ g.40.1.1 (A:) HIV nucl 50.0 3.1 0.00022 26.8 1.4 20 338-362 8-27 (29)
2 d1a6bb_ g.40.1.1 (B:) Zinc fin 25.6 13 0.00094 25.3 1.4 19 337-360 11-29 (40)
3 d2bs2a3 d.168.1.1 (A:251-371) 24.6 13 0.00091 30.0 1.4 21 233-253 90-111 (121)
4 d1yuza2 g.41.5.1 (A:167-202) N 20.2 36 0.0027 22.3 2.8 29 163-191 4-32 (36)
5 d1nnqa2 g.41.5.1 (A:135-171) R 17.0 48 0.0035 21.8 2.9 29 163-191 4-32 (37)
6 d1szha_ a.226.1.1 (A:) Her-1 { 15.3 17 0.0012 30.4 0.2 40 392-433 30-69 (147)
7 d1chua3 d.168.1.1 (A:238-353) 13.6 30 0.0022 27.3 1.3 20 234-253 87-106 (116)
8 d1kf6c_ f.21.2.2 (C:) Fumarate 13.3 20 0.0015 29.8 0.1 12 94-105 2-13 (130)
9 d1neka3 d.168.1.1 (A:236-355) 10.4 47 0.0034 26.4 1.5 22 232-253 89-111 (120)
10 d2ghfa2 g.37.1.1 (A:9-44) Zinc 9.8 38 0.0028 22.4 0.6 7 337-343 11-17 (36)
No 1
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=49.97 E-value=3.1 Score=26.84 Aligned_cols=20 Identities=35% Similarity=0.763 Sum_probs=15.9
Q ss_pred ccCCCCCeeecCCCCcccccCCCcc
Q 013320 338 ACGYCPEVHIGPWGHNVKLCGAFKH 362 (445)
Q Consensus 338 ~C~yC~EVHVG~~GHkir~C~~~k~ 362 (445)
.|=.| |-.||.+|+|.++..
T Consensus 8 kCfNC-----GkeGH~ar~CrAPRk 27 (29)
T d1nc8a_ 8 RCWNC-----GKEGHSARQCRAPRR 27 (29)
T ss_dssp BCTTT-----SCBSSCGGGCCSSSS
T ss_pred EeecC-----CccchhhhhccCccc
Confidence 46666 678999999999854
No 2
>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=25.60 E-value=13 Score=25.33 Aligned_cols=19 Identities=42% Similarity=0.800 Sum_probs=15.7
Q ss_pred cccCCCCCeeecCCCCcccccCCC
Q 013320 337 KACGYCPEVHIGPWGHNVKLCGAF 360 (445)
Q Consensus 337 ~~C~yC~EVHVG~~GHkir~C~~~ 360 (445)
--|-||-| .||-+++|--.
T Consensus 11 DQCAyCke-----~GHW~~dCPkk 29 (40)
T d1a6bb_ 11 DQCAYCKE-----KGHWAKDCPKK 29 (40)
T ss_dssp SSCSSSCC-----TTCCTTSCSSS
T ss_pred hhhHHHhh-----cCchhhhCccC
Confidence 35999998 79999999743
No 3
>d2bs2a3 d.168.1.1 (A:251-371) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}
Probab=24.56 E-value=13 Score=30.05 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=17.6
Q ss_pred CCcchhhhHHHH-hCCCCCCCC
Q 013320 233 DRIPAVVELCIQ-AGVDIPEYP 253 (445)
Q Consensus 233 ~riPAVVELCiQ-AGvdiPeyp 253 (445)
.|.|.|.|+|.+ +|+|+.+.|
T Consensus 90 ~rfp~i~~~~~~~~GiD~~k~p 111 (121)
T d2bs2a3 90 TNLRDVQEICEYFAGIDPAEKW 111 (121)
T ss_dssp HHSHHHHHHHHHTSCCCTTTSC
T ss_pred hhhHHHHHHHHHhcCCCCCCCc
Confidence 367999999999 799987655
No 4
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=20.16 E-value=36 Score=22.35 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=23.4
Q ss_pred eeeccCCCCCceecCCCCccccccCCccc
Q 013320 163 PVYGCSECSEVHVAHSGHHIQNCQGATAA 191 (445)
Q Consensus 163 pV~~C~~C~EVHVG~~GH~irtC~g~k~~ 191 (445)
.++.|.-|.-+|.|...-+=-.|++.++.
T Consensus 4 ~~~vC~vCGyi~~g~~Pe~CPvCg~~~~~ 32 (36)
T d1yuza2 4 KFHLCPICGYIHKGEDFEKCPICFRPKDT 32 (36)
T ss_dssp CEEECSSSCCEEESSCCSBCTTTCCBGGG
T ss_pred CEEECCCCCCEeeCCCCCcCCCCCCcHHH
Confidence 46889999999999877777777776654
No 5
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=17.03 E-value=48 Score=21.77 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=23.3
Q ss_pred eeeccCCCCCceecCCCCccccccCCccc
Q 013320 163 PVYGCSECSEVHVAHSGHHIQNCQGATAA 191 (445)
Q Consensus 163 pV~~C~~C~EVHVG~~GH~irtC~g~k~~ 191 (445)
.++.|.-|.-+|.|...-+=--|++.++.
T Consensus 4 ~~~~C~vCG~i~~g~~P~~CPvCg~~~~~ 32 (37)
T d1nnqa2 4 KVYICPICGYTAVDEAPEYCPVCGAPKEK 32 (37)
T ss_dssp CEEECTTTCCEEESCCCSBCTTTCCBGGG
T ss_pred cEEECCCCCCEecCCCCCcCCCCCCcHHH
Confidence 57899999999999877777777776654
No 6
>d1szha_ a.226.1.1 (A:) Her-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=15.27 E-value=17 Score=30.40 Aligned_cols=40 Identities=28% Similarity=0.305 Sum_probs=28.9
Q ss_pred CCCccccchhhhcCCCchhhhhHHHcCCCCCCCCcccccccc
Q 013320 392 KGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDI 433 (445)
Q Consensus 392 ~g~~l~~e~R~~ygr~PAVVELCiQAGa~vP~~y~~~mr~d~ 433 (445)
||.||+- +-.-=.+|||.|-+|+|--. .-.+|+.||.||-
T Consensus 30 FgtPirC-Gy~rd~kip~~Vy~C~Q~eL-fa~Ep~k~~NLdD 69 (147)
T d1szha_ 30 FGTPIRC-GYDRDPKLPGYVYKCLQNVL-FAKEPKKKINLDD 69 (147)
T ss_dssp HTCCCCT-TCCSCTTHHHHHHHHHHHHH-TSSCGGGCCCGGG
T ss_pred cCCCeec-ccccCCCccHHHHHHHHHHH-hccCcccccCCCc
Confidence 5677766 33334689999999999743 2347999999984
No 7
>d1chua3 d.168.1.1 (A:238-353) L-aspartate oxidase {Escherichia coli [TaxId: 562]}
Probab=13.56 E-value=30 Score=27.32 Aligned_cols=20 Identities=25% Similarity=0.584 Sum_probs=16.7
Q ss_pred CcchhhhHHHHhCCCCCCCC
Q 013320 234 RIPAVVELCIQAGVDIPEYP 253 (445)
Q Consensus 234 riPAVVELCiQAGvdiPeyp 253 (445)
|.|.|.+.|.+.|+|+-+.|
T Consensus 87 rfP~i~~~~~~~GiD~~~~~ 106 (116)
T d1chua3 87 HFPMIYEKLLGLGIDLTQEP 106 (116)
T ss_dssp HCHHHHHHHHTTTCCTTTSC
T ss_pred hHHHHHHHHHHcCCCCCCCc
Confidence 45999999999999986543
No 8
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=13.27 E-value=20 Score=29.76 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=9.2
Q ss_pred CCCCCCCccHHH
Q 013320 94 KKKKPYPIPIEK 105 (445)
Q Consensus 94 ~~rKP~~~P~k~ 105 (445)
+|||||++||+-
T Consensus 2 skRkpYvR~m~~ 13 (130)
T d1kf6c_ 2 TKRKPYVRPMTS 13 (130)
T ss_dssp CCCCCBCCCCCT
T ss_pred CCCCCccCCCCc
Confidence 578899888753
No 9
>d1neka3 d.168.1.1 (A:236-355) Succinate dehydogenase {Escherichia coli [TaxId: 562]}
Probab=10.36 E-value=47 Score=26.43 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=17.5
Q ss_pred CCCcchhhhHHHH-hCCCCCCCC
Q 013320 232 YDRIPAVVELCIQ-AGVDIPEYP 253 (445)
Q Consensus 232 y~riPAVVELCiQ-AGvdiPeyp 253 (445)
..|.|+|+++|.+ +|+|+-+.|
T Consensus 89 ~~rfP~i~~~~~~~~giD~~~ep 111 (120)
T d1neka3 89 ESRLPGILELSRTFAHVDPVKEP 111 (120)
T ss_dssp HHHCHHHHHHHHHHHCCCTTTSC
T ss_pred HHHCHHHHHHHHHhcCCCCCCCc
Confidence 3467999999999 699986543
No 10
>d2ghfa2 g.37.1.1 (A:9-44) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.83 E-value=38 Score=22.36 Aligned_cols=7 Identities=43% Similarity=1.317 Sum_probs=5.6
Q ss_pred cccCCCC
Q 013320 337 KACGYCP 343 (445)
Q Consensus 337 ~~C~yC~ 343 (445)
+-|+|||
T Consensus 11 yECKYC~ 17 (36)
T d2ghfa2 11 YECKYCT 17 (36)
T ss_dssp EECSSCS
T ss_pred eeeeecC
Confidence 4699997
Done!