BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013321
         (445 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TC9|A Chain A, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
           From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
           Resolution
 pdb|3TC9|B Chain B, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
           From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
           Resolution
          Length = 430

 Score = 38.5 bits (88), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 12/121 (9%)

Query: 55  SRPKLVAGSPEGYYGHVDGRPRGARMNHPK-GLAV--------DDRGNIYIADTMNMAIR 105
           + P +V G  +G    VDG  + AR + P+ G  V         D  + Y  D  N  IR
Sbjct: 307 TTPYIVCGQ-QGAKDWVDGVGKKARXHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR 365

Query: 106 KISDTGVTTIAGGKWSRGV-GHVDGP-SEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIRE 163
            ++  G  T   G+ S G  G+ DG   ++A+F++   +VY        + DR N+ IR+
Sbjct: 366 ILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRK 425

Query: 164 I 164
           I
Sbjct: 426 I 426



 Score = 36.6 bits (83), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 51  LSPYSRPKLVAG-SPEGYYGHVDGRPRG-ARMNHPKGLAVD-DRGNIYIADTMNMAIRKI 107
           L+P  R    AG    G  G+ DG  R  AR NHP+G+  D +R   +I D  N  IRKI
Sbjct: 367 LTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426


>pdb|1RWI|B Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
 pdb|1RWI|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
 pdb|1RWL|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
          Length = 270

 Score = 36.6 bits (83), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 35/170 (20%)

Query: 1   MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLV 60
           ++K   G T  TV   +    +P  +AV  +G + V D  N  +              L 
Sbjct: 48  VVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDFNNRVV-------------TLA 93

Query: 61  AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKW 120
           AGS        DG      +N+P+GLAVD +G +Y+AD  N  + K        +A G  
Sbjct: 94  AGSNNQTVLPFDG------LNYPEGLAVDTQGAVYVADRGNNRVVK--------LAAGSK 139

Query: 121 SRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD 170
           ++ V    G        ND D V V +S ++ V D  N  + +++   ++
Sbjct: 140 TQTVLPFTG-------LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 182



 Score = 33.1 bits (74), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 61/152 (40%), Gaps = 35/152 (23%)

Query: 14  FEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSR-PKLVAGSPEGYYGHVD 72
           F G  F + P  VAV  +G          N+Y  S  +  Y R  KL  GS        +
Sbjct: 17  FTGIDFRLSPSGVAVDSAG----------NVYVTSEGM--YGRVVKLATGSTGTTVLPFN 64

Query: 73  GRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSE 132
           G      +  P+GLAVD  G +Y+ D  N          V T+A G  ++ V   DG + 
Sbjct: 65  G------LYQPQGLAVDGAGTVYVTDFNNR---------VVTLAAGSNNQTVLPFDGLNY 109

Query: 133 DAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 164
               + D       +  ++ V DRGN  + ++
Sbjct: 110 PEGLAVD-------TQGAVYVADRGNNRVVKL 134



 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 20/116 (17%)

Query: 1   MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLV 60
           ++K   G   +TV   +    +P  VAV  SG + V D++N+ + K    L   S  ++V
Sbjct: 131 VVKLAAGSKTQTVLPFTGLN-DPDGVAVDNSGNVYVTDTDNNRVVK----LEAESNNQVV 185

Query: 61  AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD-TMNMAIRKISDTGVTTI 115
               +              +  P G+AVD+ G +Y+ +   N  ++ ++ +  +T+
Sbjct: 186 LPFTD--------------ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV 227


>pdb|4HW6|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
           From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
 pdb|4HW6|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
           From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
 pdb|4HW6|C Chain C, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
           From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
 pdb|4HW6|D Chain D, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
           From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
          Length = 433

 Score = 35.8 bits (81), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 21/158 (13%)

Query: 24  FSVAVSPSGELL-VLDSENSNIYKI--STSLSPYSRPKLVAG---SPEGYYGHVDGRPRG 77
           F +   P+G+   ++ +    IY++  +      + P +V G   SP    G VDG   G
Sbjct: 276 FHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSP----GWVDGXGTG 331

Query: 78  ARMNHP-KGLAV--------DDRGNIYIADTMNMAIRKISDTG-VTTIAGGKWSRGVGHV 127
           AR+  P +G+ V        +D  + Y  D  +  +R ++  G VTT AG   SR  G+V
Sbjct: 332 ARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYV 391

Query: 128 DGP-SEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 164
           DG     A F++   + Y        + D  N  +R+I
Sbjct: 392 DGELRSQALFNHPTSIAYDXKRKCFYIGDCDNHRVRKI 429


>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
          Length = 503

 Score = 33.5 bits (75), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 230 PPKSARPPLVPTEDDFEKP-EEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPV 283
           PP     P+     + EKP +EGFF  + R +L T   +G    G  S+FR K +
Sbjct: 172 PPAEEEQPVEEIAQEQEKPTKEGFFARLKRSLLKTKENLG---SGFISLFRGKKI 223


>pdb|3HRP|A Chain A, Crystal Structure Of Structural Genomics Protein Of
           Unknown Function (np_812590.1) From Bacteroides
           Thetaiotaomicron Vpi-5482 At 1.70 A Resolution
          Length = 409

 Score = 32.7 bits (73), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 4   FEGGYTVETVFEGSK---FGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLV 60
           F G  T +TV +G +      +P    V   G   ++D       +    L  Y     V
Sbjct: 303 FCGSATQKTVQDGLREEALFAQPNGXTVDEDGNFYIVDGFKGYCLRKLDILDGYV--STV 360

Query: 61  AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRK 106
           AG  +     +DG P  A  N+P  +  D  G  +IA+    AIRK
Sbjct: 361 AGQVD-VASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRK 405


>pdb|3BWS|A Chain A, Crystal Structure Of The Leptospiral Antigen Lp49
 pdb|3BWS|B Chain B, Crystal Structure Of The Leptospiral Antigen Lp49
          Length = 433

 Score = 32.3 bits (72), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 13/72 (18%)

Query: 46  KISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHP------KGLAVDDRGNIYIADT 99
           K+  S+  + +P  +A SP+G Y +V  R      NHP      KGL +   G +Y+ DT
Sbjct: 336 KVQKSIPVFDKPNTIALSPDGKYLYVSCRGP----NHPTEGYLKKGLVL---GKVYVIDT 388

Query: 100 MNMAIRKISDTG 111
               +++  + G
Sbjct: 389 TTDTVKEFWEAG 400


>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of
           Complement Protease C1r
 pdb|1GPZ|B Chain B, The Crystal Structure Of The Zymogen Catalytic Domain Of
           Complement Protease C1r
          Length = 399

 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 53/163 (32%), Gaps = 23/163 (14%)

Query: 30  PSGELLVLDSENSNIYKISTSL---SPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGL 86
           P+G+     +   N YK         PY + +  AGS E   G      +G   N  KG 
Sbjct: 77  PNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGE 136

Query: 87  A--------------VDDRGNIYIADTMNMA------IRKISDTGVTTIAGGKWSRGVGH 126
                          V+ R  I       M          I   G   + G +W     H
Sbjct: 137 KIPRCLPVCGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNIHGRGGGALLGDRWILTAAH 196

Query: 127 VDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD 169
              P E    SN    V++G +    ++  GN  IR + +H D
Sbjct: 197 TLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPD 239


>pdb|2DG0|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
          Protein From Staphylococcus Aureus
 pdb|2DG0|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
          Protein From Staphylococcus Aureus
 pdb|2DG0|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
          Protein From Staphylococcus Aureus
 pdb|2DG0|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
          Protein From Staphylococcus Aureus
 pdb|2DG0|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
          Protein From Staphylococcus Aureus
 pdb|2DG0|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
          Protein From Staphylococcus Aureus
 pdb|2DG0|G Chain G, Crystal Structure Of Drp35, A 35kda Drug Responsive
          Protein From Staphylococcus Aureus
 pdb|2DG0|H Chain H, Crystal Structure Of Drp35, A 35kda Drug Responsive
          Protein From Staphylococcus Aureus
 pdb|2DG0|I Chain I, Crystal Structure Of Drp35, A 35kda Drug Responsive
          Protein From Staphylococcus Aureus
 pdb|2DG0|J Chain J, Crystal Structure Of Drp35, A 35kda Drug Responsive
          Protein From Staphylococcus Aureus
 pdb|2DG0|K Chain K, Crystal Structure Of Drp35, A 35kda Drug Responsive
          Protein From Staphylococcus Aureus
 pdb|2DG0|L Chain L, Crystal Structure Of Drp35, A 35kda Drug Responsive
          Protein From Staphylococcus Aureus
          Length = 333

 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 9  TVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLV-AGSPEGY 67
          T E   E SK G++   +     G+L +LD    NI+KI+       RP +    +P   
Sbjct: 33 TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAI 92

Query: 68 YGHVDGR 74
            H DGR
Sbjct: 93 KIHKDGR 99


>pdb|2DG1|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
          Protein From Staphylococcus Aureus, Complexed With Ca2+
 pdb|2DG1|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
          Protein From Staphylococcus Aureus, Complexed With Ca2+
 pdb|2DG1|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
          Protein From Staphylococcus Aureus, Complexed With Ca2+
 pdb|2DG1|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
          Protein From Staphylococcus Aureus, Complexed With Ca2+
 pdb|2DG1|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
          Protein From Staphylococcus Aureus, Complexed With Ca2+
 pdb|2DG1|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
          Protein From Staphylococcus Aureus, Complexed With Ca2+
          Length = 333

 Score = 30.8 bits (68), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 9  TVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLV-AGSPEGY 67
          T E   E SK G++   +     G+L +LD    NI+KI+       RP +    +P   
Sbjct: 33 TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAI 92

Query: 68 YGHVDGR 74
            H DGR
Sbjct: 93 KIHKDGR 99


>pdb|2DSO|A Chain A, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
          Responsive Protein From Staphylococcus Aureus
 pdb|2DSO|B Chain B, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
          Responsive Protein From Staphylococcus Aureus
 pdb|2DSO|C Chain C, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
          Responsive Protein From Staphylococcus Aureus
 pdb|2DSO|D Chain D, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
          Responsive Protein From Staphylococcus Aureus
 pdb|2DSO|E Chain E, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
          Responsive Protein From Staphylococcus Aureus
 pdb|2DSO|F Chain F, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
          Responsive Protein From Staphylococcus Aureus
          Length = 333

 Score = 30.8 bits (68), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 9  TVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLV-AGSPEGY 67
          T E   E SK G++   +     G+L +LD    NI+KI+       RP +    +P   
Sbjct: 33 TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAI 92

Query: 68 YGHVDGR 74
            H DGR
Sbjct: 93 KIHKDGR 99


>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of
           Complement Protease C1r
          Length = 329

 Score = 30.4 bits (67), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 53/163 (32%), Gaps = 23/163 (14%)

Query: 30  PSGELLVLDSENSNIYKISTSL---SPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGL 86
           P+G+     +   N YK         PY + +  AGS E   G      +G   N  KG 
Sbjct: 9   PNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGE 68

Query: 87  A--------------VDDRGNIYIADTMNMA------IRKISDTGVTTIAGGKWSRGVGH 126
                          V+ R  I       M          I   G   + G +W     H
Sbjct: 69  KIPRCLPVCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIHGRGGGALLGDRWILTAAH 128

Query: 127 VDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD 169
              P E    SN    V++G +    ++  GN  IR + +H D
Sbjct: 129 TLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPD 171


>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease
           C1r
          Length = 328

 Score = 30.4 bits (67), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 53/163 (32%), Gaps = 23/163 (14%)

Query: 30  PSGELLVLDSENSNIYKISTSL---SPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGL 86
           P+G+     +   N YK         PY + +  AGS E   G      +G   N  KG 
Sbjct: 9   PNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGE 68

Query: 87  A--------------VDDRGNIYIADTMNMA------IRKISDTGVTTIAGGKWSRGVGH 126
                          V+ R  I       M          I   G   + G +W     H
Sbjct: 69  KIPRCLPVCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIHGRGGGALLGDRWILTAAH 128

Query: 127 VDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD 169
              P E    SN    V++G +    ++  GN  IR + +H D
Sbjct: 129 TLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPD 171


>pdb|1Q7F|A Chain A, Brain Tumor Nhl Domain
 pdb|1Q7F|B Chain B, Brain Tumor Nhl Domain
          Length = 286

 Score = 29.6 bits (65), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 52  SPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG 111
           S   R +++     G +G ++G+        P G+AV+ + +I +ADT N  I+     G
Sbjct: 6   SQIKRQRMIYHCKFGEFGVMEGQ-----FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG 60

Query: 112 VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVV 143
                 G+  +    +  P+  A   N  D++
Sbjct: 61  RFKFQFGECGKRDSQLLYPNRVAVVRNSGDII 92


>pdb|4EQY|A Chain A, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
           Acetylglucosamine O-Acyltransferase From Burkholderia
           Thailandensis
 pdb|4EQY|B Chain B, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
           Acetylglucosamine O-Acyltransferase From Burkholderia
           Thailandensis
 pdb|4EQY|C Chain C, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
           Acetylglucosamine O-Acyltransferase From Burkholderia
           Thailandensis
 pdb|4EQY|E Chain E, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
           Acetylglucosamine O-Acyltransferase From Burkholderia
           Thailandensis
 pdb|4EQY|F Chain F, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
           Acetylglucosamine O-Acyltransferase From Burkholderia
           Thailandensis
 pdb|4EQY|G Chain G, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
           Acetylglucosamine O-Acyltransferase From Burkholderia
           Thailandensis
          Length = 283

 Score = 29.3 bits (64), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 66  GYYGHVDGRPRGAR-MNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKW 120
           G+Y  V GRP+  +  + P  L + DR  I    T++     + D GVTT+    W
Sbjct: 80  GHYASVGGRPQDMKYKDEPTRLVIGDRNTIREFTTIHTG--TVQDAGVTTLGDDNW 133


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.136    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,043,713
Number of Sequences: 62578
Number of extensions: 522702
Number of successful extensions: 1105
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1087
Number of HSP's gapped (non-prelim): 28
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)