Query 013321
Match_columns 445
No_of_seqs 214 out of 1639
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 02:40:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013321.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013321hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02919 haloacid dehalogenase 99.7 6.5E-16 1.4E-20 177.7 20.8 223 20-259 739-984 (1057)
2 PLN02919 haloacid dehalogenase 99.6 1.8E-14 3.9E-19 165.9 20.9 144 21-171 568-717 (1057)
3 KOG4659 Uncharacterized conser 99.5 1.1E-12 2.3E-17 147.2 16.9 167 4-173 390-576 (1899)
4 PF08450 SGL: SMP-30/Gluconola 99.3 1.1E-10 2.4E-15 112.3 18.7 143 8-185 70-232 (246)
5 KOG4659 Uncharacterized conser 99.3 7.1E-12 1.5E-16 140.7 10.5 141 21-168 533-692 (1899)
6 PF08450 SGL: SMP-30/Gluconola 99.0 4.6E-09 1E-13 101.1 14.9 137 23-190 42-196 (246)
7 COG3386 Gluconolactonase [Carb 98.8 3E-07 6.5E-12 93.2 19.0 124 21-171 111-247 (307)
8 TIGR02604 Piru_Ver_Nterm putat 98.7 1.4E-06 3.1E-11 89.7 18.7 150 7-187 1-193 (367)
9 PF01436 NHL: NHL repeat; Int 98.5 1E-07 2.2E-12 63.1 4.1 28 80-107 1-28 (28)
10 COG4257 Vgb Streptogramin lyas 98.4 1E-05 2.2E-10 80.5 16.2 152 20-187 103-285 (353)
11 COG4257 Vgb Streptogramin lyas 98.4 4.4E-06 9.5E-11 83.0 13.5 136 19-188 60-199 (353)
12 COG3391 Uncharacterized conser 98.4 1E-05 2.3E-10 83.9 16.8 140 20-189 115-264 (381)
13 COG3386 Gluconolactonase [Carb 98.4 1.8E-05 3.8E-10 80.4 16.9 152 23-211 69-243 (307)
14 TIGR02604 Piru_Ver_Nterm putat 98.3 2.2E-05 4.9E-10 80.9 16.5 129 21-168 124-301 (367)
15 COG3391 Uncharacterized conser 98.3 2.8E-05 6.1E-10 80.8 16.8 135 21-190 74-219 (381)
16 PF03088 Str_synth: Strictosid 98.2 4.5E-06 9.7E-11 70.1 7.6 69 24-111 1-88 (89)
17 PF01436 NHL: NHL repeat; Int 98.1 3.7E-06 8.1E-11 55.6 4.4 27 21-47 2-28 (28)
18 KOG1520 Predicted alkaloid syn 98.1 3.1E-05 6.7E-10 80.0 12.7 140 21-191 115-278 (376)
19 PF10282 Lactonase: Lactonase, 98.0 0.00019 4.2E-09 73.2 16.5 150 19-189 142-303 (345)
20 KOG1214 Nidogen and related ba 98.0 5E-05 1.1E-09 84.0 11.3 117 21-170 1068-1189(1289)
21 PRK11028 6-phosphogluconolacto 97.9 0.00041 8.9E-09 69.5 17.0 143 20-185 174-327 (330)
22 PF10282 Lactonase: Lactonase, 97.9 0.00032 7E-09 71.6 16.0 128 18-168 189-323 (345)
23 PRK11028 6-phosphogluconolacto 97.9 0.0004 8.8E-09 69.5 15.8 121 21-167 80-205 (330)
24 KOG1214 Nidogen and related ba 97.6 0.00044 9.5E-09 76.9 12.2 140 21-193 1025-1171(1289)
25 PF03088 Str_synth: Strictosid 97.5 0.00051 1.1E-08 57.8 8.1 68 84-168 1-88 (89)
26 PF06977 SdiA-regulated: SdiA- 97.3 0.0013 2.8E-08 65.0 9.6 76 21-107 171-247 (248)
27 KOG1520 Predicted alkaloid syn 97.3 0.0039 8.4E-08 64.7 13.1 98 82-193 116-234 (376)
28 TIGR03606 non_repeat_PQQ dehyd 97.3 0.024 5.3E-07 60.7 19.6 92 3-108 15-122 (454)
29 TIGR03866 PQQ_ABC_repeats PQQ- 97.2 0.019 4E-07 54.8 16.6 137 21-185 157-298 (300)
30 PF07995 GSDH: Glucose / Sorbo 96.9 0.025 5.4E-07 57.8 14.7 124 21-169 2-158 (331)
31 PF13449 Phytase-like: Esteras 96.8 0.028 6.1E-07 57.3 14.7 135 21-168 85-252 (326)
32 TIGR03118 PEPCTERM_chp_1 conse 96.8 0.047 1E-06 55.6 15.6 160 24-212 141-323 (336)
33 PF05787 DUF839: Bacterial pro 96.8 0.017 3.6E-07 63.0 13.3 80 19-98 348-453 (524)
34 PF07995 GSDH: Glucose / Sorbo 96.8 0.034 7.3E-07 56.9 14.7 136 21-169 114-291 (331)
35 KOG4499 Ca2+-binding protein R 96.7 0.015 3.2E-07 57.3 10.9 80 23-111 160-243 (310)
36 COG2706 3-carboxymuconate cycl 96.5 0.084 1.8E-06 54.4 15.1 126 18-168 188-322 (346)
37 PF06977 SdiA-regulated: SdiA- 96.5 0.035 7.7E-07 54.9 12.1 122 22-164 119-247 (248)
38 TIGR03866 PQQ_ABC_repeats PQQ- 96.5 0.22 4.8E-06 47.4 17.2 103 32-170 1-106 (300)
39 PF02239 Cytochrom_D1: Cytochr 96.3 0.18 3.9E-06 52.5 17.0 135 23-188 39-182 (369)
40 COG2706 3-carboxymuconate cycl 96.1 0.47 1E-05 49.0 18.1 166 22-214 146-324 (346)
41 KOG4499 Ca2+-binding protein R 96.0 0.24 5.1E-06 49.1 14.4 82 79-171 156-245 (310)
42 PF13449 Phytase-like: Esteras 95.9 1.6 3.4E-05 44.6 20.9 30 82-111 86-121 (326)
43 PF01731 Arylesterase: Arylest 95.8 0.071 1.5E-06 44.6 8.8 31 79-109 52-83 (86)
44 TIGR02658 TTQ_MADH_Hv methylam 95.7 0.42 9.1E-06 49.8 16.1 114 32-173 13-142 (352)
45 TIGR03606 non_repeat_PQQ dehyd 95.6 0.24 5.2E-06 53.2 14.3 118 21-158 79-250 (454)
46 TIGR02658 TTQ_MADH_Hv methylam 95.6 0.53 1.2E-05 49.0 16.1 65 86-169 253-332 (352)
47 PF03022 MRJP: Major royal jel 95.6 0.043 9.2E-07 55.3 7.9 64 22-98 187-253 (287)
48 COG3211 PhoX Predicted phospha 95.4 0.064 1.4E-06 58.4 8.8 81 21-101 417-520 (616)
49 COG2133 Glucose/sorbosone dehy 95.2 0.31 6.7E-06 51.5 13.2 134 21-168 239-398 (399)
50 TIGR03118 PEPCTERM_chp_1 conse 95.2 1.2 2.6E-05 45.7 16.7 162 21-196 23-207 (336)
51 smart00135 LY Low-density lipo 95.0 0.049 1.1E-06 37.7 4.6 33 79-111 7-40 (43)
52 PF00058 Ldl_recept_b: Low-den 95.0 0.082 1.8E-06 38.0 5.8 41 32-90 1-42 (42)
53 COG3204 Uncharacterized protei 94.8 0.094 2E-06 53.1 7.7 77 22-109 234-311 (316)
54 KOG1215 Low-density lipoprotei 94.2 0.47 1E-05 54.7 12.5 134 21-188 480-621 (877)
55 smart00135 LY Low-density lipo 93.6 0.15 3.2E-06 35.2 4.6 31 21-51 9-40 (43)
56 PF05787 DUF839: Bacterial pro 93.0 0.97 2.1E-05 49.5 11.8 80 78-158 347-456 (524)
57 PF14269 Arylsulfotran_2: Aryl 92.6 3.7 8.1E-05 41.7 14.6 134 21-170 144-292 (299)
58 PF03022 MRJP: Major royal jel 92.5 0.2 4.4E-06 50.4 5.4 59 82-155 187-253 (287)
59 PF02239 Cytochrom_D1: Cytochr 92.3 1.1 2.5E-05 46.6 10.7 98 34-169 8-110 (369)
60 TIGR03032 conserved hypothetic 92.2 3.2 7E-05 42.8 13.5 142 21-186 103-251 (335)
61 COG3204 Uncharacterized protei 89.8 19 0.00041 37.0 16.1 148 21-189 129-295 (316)
62 KOG0266 WD40 repeat-containing 89.4 9.4 0.0002 40.7 14.7 113 22-170 205-321 (456)
63 COG2133 Glucose/sorbosone dehy 89.3 1.6 3.5E-05 46.2 8.6 77 21-111 314-398 (399)
64 PF01731 Arylesterase: Arylest 88.8 1.4 3.1E-05 36.8 6.2 42 6-50 42-84 (86)
65 PF06739 SBBP: Beta-propeller 88.6 0.82 1.8E-05 32.3 4.0 28 15-42 7-34 (38)
66 KOG0266 WD40 repeat-containing 88.6 24 0.00052 37.7 17.1 126 8-171 237-368 (456)
67 KOG3567 Peptidylglycine alpha- 88.6 3.6 7.7E-05 44.2 10.4 129 21-167 168-298 (501)
68 KOG0318 WD40 repeat stress pro 88.3 32 0.00069 37.8 17.3 112 21-170 364-476 (603)
69 PF05096 Glu_cyclase_2: Glutam 87.5 6.6 0.00014 39.5 11.1 72 22-111 46-119 (264)
70 cd00200 WD40 WD40 domain, foun 86.3 25 0.00054 31.7 14.9 70 23-110 96-165 (289)
71 PRK02888 nitrous-oxide reducta 85.8 10 0.00022 42.6 12.4 82 81-168 321-405 (635)
72 PF14269 Arylsulfotran_2: Aryl 85.7 44 0.00095 34.0 18.2 73 78-156 141-219 (299)
73 PF14517 Tachylectin: Tachylec 85.2 13 0.00028 36.7 11.6 114 25-172 85-211 (229)
74 PF06739 SBBP: Beta-propeller 85.2 0.73 1.6E-05 32.5 2.2 21 81-101 13-33 (38)
75 COG3211 PhoX Predicted phospha 85.1 18 0.00039 40.1 13.7 80 77-158 413-520 (616)
76 KOG1446 Histone H3 (Lys4) meth 85.0 27 0.00058 35.9 14.0 66 23-108 103-168 (311)
77 KOG0291 WD40-repeat-containing 84.9 28 0.0006 39.8 15.1 124 22-166 352-507 (893)
78 PF05096 Glu_cyclase_2: Glutam 84.8 47 0.001 33.5 17.2 115 22-172 91-208 (264)
79 TIGR03032 conserved hypothetic 84.3 3.1 6.7E-05 42.9 7.1 55 21-97 203-257 (335)
80 KOG1446 Histone H3 (Lys4) meth 84.2 38 0.00082 34.8 14.7 120 22-169 142-264 (311)
81 cd00200 WD40 WD40 domain, foun 83.1 35 0.00076 30.7 15.4 111 23-168 138-250 (289)
82 PRK02888 nitrous-oxide reducta 81.8 5 0.00011 44.9 8.0 78 20-110 320-404 (635)
83 COG1520 FOG: WD40-like repeat 81.2 51 0.0011 33.8 14.9 70 28-115 65-135 (370)
84 KOG0318 WD40 repeat stress pro 80.5 44 0.00095 36.8 14.2 119 18-171 403-521 (603)
85 PF02333 Phytase: Phytase; In 80.2 15 0.00033 38.8 10.6 79 20-111 207-291 (381)
86 KOG0282 mRNA splicing factor [ 78.9 30 0.00066 37.4 12.3 90 21-111 300-416 (503)
87 KOG1215 Low-density lipoprotei 78.6 21 0.00046 41.3 12.2 134 22-189 438-578 (877)
88 PF00058 Ldl_recept_b: Low-den 78.0 9.8 0.00021 27.1 6.0 38 149-186 1-41 (42)
89 KOG0283 WD40 repeat-containing 77.1 29 0.00064 39.4 12.2 122 21-168 410-533 (712)
90 KOG0316 Conserved WD40 repeat- 76.6 28 0.00061 34.9 10.5 84 77-167 179-268 (307)
91 PF13360 PQQ_2: PQQ-like domai 76.1 52 0.0011 30.5 12.2 68 27-115 32-100 (238)
92 KOG1274 WD40 repeat protein [G 75.3 94 0.002 36.3 15.5 85 23-109 16-125 (933)
93 KOG0289 mRNA splicing factor [ 74.9 1.3E+02 0.0028 32.6 15.8 129 4-168 332-463 (506)
94 PTZ00421 coronin; Provisional 73.9 1.4E+02 0.003 32.6 16.2 72 23-110 78-156 (493)
95 KOG3567 Peptidylglycine alpha- 73.5 5.3 0.00012 43.0 5.1 34 78-111 464-497 (501)
96 PF05935 Arylsulfotrans: Aryls 73.4 1.1E+02 0.0025 32.9 15.4 86 83-168 192-302 (477)
97 smart00284 OLF Olfactomedin-li 73.0 64 0.0014 32.3 12.3 76 31-111 83-162 (255)
98 COG3823 Glutamine cyclotransfe 72.4 11 0.00023 37.2 6.4 62 31-98 185-247 (262)
99 KOG0271 Notchless-like WD40 re 71.3 71 0.0015 34.0 12.5 69 23-109 118-186 (480)
100 KOG0291 WD40-repeat-containing 71.3 58 0.0013 37.3 12.5 77 21-116 436-518 (893)
101 TIGR02276 beta_rpt_yvtn 40-res 70.6 15 0.00033 25.0 5.4 39 147-185 2-41 (42)
102 PRK04792 tolB translocation pr 69.6 1.6E+02 0.0035 31.4 16.8 27 84-110 309-338 (448)
103 TIGR02276 beta_rpt_yvtn 40-res 69.5 17 0.00036 24.8 5.4 20 92-111 4-23 (42)
104 PF05935 Arylsulfotrans: Aryls 68.9 82 0.0018 34.0 13.1 84 24-111 193-303 (477)
105 KOG3881 Uncharacterized conser 68.3 62 0.0013 34.3 11.3 76 21-115 203-282 (412)
106 PRK02889 tolB translocation pr 67.8 1.7E+02 0.0036 30.8 18.0 68 25-111 200-273 (427)
107 TIGR03300 assembly_YfgL outer 67.0 1E+02 0.0022 31.4 12.8 28 85-114 274-302 (377)
108 PF06433 Me-amine-dh_H: Methyl 66.5 74 0.0016 33.3 11.5 109 33-170 4-129 (342)
109 PRK11138 outer membrane biogen 66.0 89 0.0019 32.3 12.3 60 31-113 256-316 (394)
110 KOG0281 Beta-TrCP (transducin 65.8 42 0.00092 35.3 9.4 125 26-173 241-394 (499)
111 PF14517 Tachylectin: Tachylec 65.6 50 0.0011 32.6 9.6 111 24-164 37-155 (229)
112 PF13360 PQQ_2: PQQ-like domai 65.4 45 0.00098 30.9 9.2 25 87-112 32-57 (238)
113 PRK03629 tolB translocation pr 64.6 1.9E+02 0.0042 30.5 18.9 69 24-111 202-276 (429)
114 KOG0272 U4/U6 small nuclear ri 63.8 1.8E+02 0.0038 31.4 13.7 113 21-171 304-422 (459)
115 KOG0303 Actin-binding protein 63.4 1.3E+02 0.0029 32.2 12.6 116 23-170 176-297 (472)
116 PRK05137 tolB translocation pr 63.2 2E+02 0.0043 30.2 16.8 27 85-111 294-323 (435)
117 TIGR03300 assembly_YfgL outer 62.7 1.2E+02 0.0026 30.8 12.4 67 25-113 60-127 (377)
118 KOG2055 WD40 repeat protein [G 62.0 97 0.0021 33.7 11.5 56 86-167 360-417 (514)
119 KOG0772 Uncharacterized conser 61.4 76 0.0017 35.0 10.7 131 21-171 318-460 (641)
120 PF02333 Phytase: Phytase; In 61.2 2.3E+02 0.0049 30.2 18.1 119 79-211 154-290 (381)
121 PRK11138 outer membrane biogen 60.7 1.2E+02 0.0025 31.4 12.0 72 31-112 69-141 (394)
122 smart00108 B_lectin Bulb-type 59.8 1.1E+02 0.0024 26.0 10.0 18 83-100 87-104 (114)
123 PRK03629 tolB translocation pr 57.7 2.5E+02 0.0055 29.6 17.3 68 25-111 247-320 (429)
124 PTZ00421 coronin; Provisional 55.9 3.1E+02 0.0066 30.0 19.1 70 23-110 128-198 (493)
125 KOG0772 Uncharacterized conser 54.9 1.5E+02 0.0033 32.8 11.6 80 23-115 170-249 (641)
126 KOG0263 Transcription initiati 54.9 71 0.0015 36.3 9.5 82 7-110 567-649 (707)
127 KOG0319 WD40-repeat-containing 54.7 2.4E+02 0.0053 32.4 13.5 113 26-172 25-140 (775)
128 PTZ00420 coronin; Provisional 54.4 3.5E+02 0.0076 30.2 16.2 71 22-111 127-198 (568)
129 KOG0293 WD40 repeat-containing 53.3 1.7E+02 0.0037 31.6 11.5 115 19-168 311-426 (519)
130 cd00028 B_lectin Bulb-type man 52.6 1.5E+02 0.0032 25.3 9.8 16 84-99 89-104 (116)
131 KOG0308 Conserved WD40 repeat- 51.5 1.9E+02 0.004 32.9 11.8 127 22-173 119-249 (735)
132 PTZ00420 coronin; Provisional 51.2 3.9E+02 0.0085 29.8 15.8 118 22-170 76-200 (568)
133 smart00108 B_lectin Bulb-type 50.8 1.3E+02 0.0028 25.6 8.7 56 82-162 54-109 (114)
134 COG4946 Uncharacterized protei 49.7 4E+02 0.0087 29.5 15.9 65 90-168 421-488 (668)
135 KOG0640 mRNA cleavage stimulat 48.6 1.1E+02 0.0024 31.9 8.9 121 23-173 175-297 (430)
136 PLN00181 protein SPA1-RELATED; 48.4 4.7E+02 0.01 29.9 16.5 120 22-170 485-609 (793)
137 PRK04922 tolB translocation pr 48.0 3.5E+02 0.0076 28.4 15.5 68 25-111 208-281 (433)
138 KOG1273 WD40 repeat protein [G 47.8 3.6E+02 0.0077 28.4 12.8 27 24-50 69-95 (405)
139 KOG0292 Vesicle coat complex C 47.6 3.8E+02 0.0082 31.9 13.7 130 21-165 251-397 (1202)
140 KOG4649 PQQ (pyrrolo-quinoline 46.7 2.1E+02 0.0045 29.4 10.4 71 91-169 147-219 (354)
141 KOG0289 mRNA splicing factor [ 46.0 4.3E+02 0.0093 28.8 13.7 69 84-168 351-420 (506)
142 KOG0649 WD40 repeat protein [G 45.7 3.4E+02 0.0074 27.6 14.5 34 24-61 118-152 (325)
143 PRK04043 tolB translocation pr 45.6 4E+02 0.0086 28.3 16.3 34 25-61 192-229 (419)
144 PRK05137 tolB translocation pr 45.2 3.9E+02 0.0084 28.0 17.8 69 24-111 205-279 (435)
145 KOG0316 Conserved WD40 repeat- 44.7 3.5E+02 0.0075 27.4 11.5 35 135-169 181-215 (307)
146 PF00400 WD40: WD domain, G-be 43.4 93 0.002 20.4 5.7 27 22-48 13-39 (39)
147 KOG4378 Nuclear protein COP1 [ 42.2 2.4E+02 0.0052 31.3 10.7 68 82-168 209-281 (673)
148 KOG2106 Uncharacterized conser 41.9 5.3E+02 0.012 28.7 13.7 40 5-48 357-396 (626)
149 KOG1517 Guanine nucleotide bin 41.6 4.5E+02 0.0097 31.9 13.3 142 4-167 1093-1239(1387)
150 TIGR02608 delta_60_rpt delta-6 41.0 46 0.001 25.6 3.9 30 24-53 4-40 (55)
151 KOG1036 Mitotic spindle checkp 40.6 4.4E+02 0.0095 27.4 14.9 107 85-211 99-209 (323)
152 PRK00178 tolB translocation pr 40.4 4.4E+02 0.0096 27.3 18.5 69 24-111 202-276 (430)
153 PF02191 OLF: Olfactomedin-lik 39.9 3.9E+02 0.0084 26.5 12.5 76 30-111 77-157 (250)
154 COG4247 Phy 3-phytase (myo-ino 39.7 3.6E+02 0.0078 27.7 10.8 79 21-111 205-289 (364)
155 cd00028 B_lectin Bulb-type man 39.7 1.6E+02 0.0035 25.1 7.7 56 82-162 55-110 (116)
156 PF04762 IKI3: IKI3 family; I 39.4 2.6E+02 0.0055 33.2 11.4 90 22-112 122-247 (928)
157 PRK04922 tolB translocation pr 39.3 4.8E+02 0.01 27.4 19.5 27 85-111 296-325 (433)
158 KOG0263 Transcription initiati 38.6 6.7E+02 0.015 28.9 15.3 45 4-51 438-482 (707)
159 PF07433 DUF1513: Protein of u 38.5 1.6E+02 0.0034 30.4 8.4 69 21-111 217-286 (305)
160 KOG0286 G-protein beta subunit 38.0 4.8E+02 0.01 27.1 16.8 110 22-165 188-301 (343)
161 PRK04792 tolB translocation pr 38.0 5.2E+02 0.011 27.5 19.9 68 25-111 222-295 (448)
162 TIGR03075 PQQ_enz_alc_DH PQQ-d 37.3 6E+02 0.013 27.9 16.2 22 24-45 317-338 (527)
163 KOG0310 Conserved WD40 repeat- 36.8 4.8E+02 0.011 28.6 11.9 26 144-169 161-186 (487)
164 KOG1408 WD40 repeat protein [F 36.7 2.7E+02 0.0058 32.3 10.3 71 22-108 598-669 (1080)
165 KOG1274 WD40 repeat protein [G 36.5 7.9E+02 0.017 29.1 15.4 77 22-111 140-219 (933)
166 PRK01742 tolB translocation pr 36.3 5.3E+02 0.011 27.0 18.0 69 24-111 207-281 (429)
167 PRK01029 tolB translocation pr 35.9 5.5E+02 0.012 27.1 14.9 71 24-111 284-360 (428)
168 PF07494 Reg_prop: Two compone 35.8 41 0.00089 21.1 2.4 17 82-98 6-22 (24)
169 KOG4378 Nuclear protein COP1 [ 35.7 1.4E+02 0.003 33.0 7.7 68 24-111 212-281 (673)
170 KOG0279 G protein beta subunit 35.5 5.2E+02 0.011 26.7 14.8 112 23-168 66-181 (315)
171 PRK01742 tolB translocation pr 35.1 5.5E+02 0.012 26.9 16.0 28 84-111 295-325 (429)
172 KOG0973 Histone transcription 33.7 8E+02 0.017 29.3 13.8 115 23-165 72-199 (942)
173 PRK00178 tolB translocation pr 33.6 5.6E+02 0.012 26.5 17.4 26 85-110 291-319 (430)
174 TIGR02800 propeller_TolB tol-p 32.9 5.4E+02 0.012 26.2 18.8 68 25-111 194-267 (417)
175 PRK12690 flgF flagellar basal 32.8 1.2E+02 0.0027 29.8 6.5 29 21-52 76-104 (238)
176 KOG2110 Uncharacterized conser 32.5 6.4E+02 0.014 26.9 13.4 73 84-170 177-251 (391)
177 KOG1408 WD40 repeat protein [F 31.3 2E+02 0.0043 33.3 8.3 75 84-173 600-677 (1080)
178 KOG0272 U4/U6 small nuclear ri 31.0 4.2E+02 0.0092 28.6 10.3 79 21-117 346-428 (459)
179 PF11768 DUF3312: Protein of u 30.7 2.5E+02 0.0055 31.2 8.9 71 21-111 260-330 (545)
180 KOG0315 G-protein beta subunit 30.6 6E+02 0.013 26.0 13.3 70 85-172 220-293 (311)
181 KOG0273 Beta-transducin family 30.1 5.5E+02 0.012 28.3 11.0 68 21-108 236-304 (524)
182 TIGR02800 propeller_TolB tol-p 29.7 6.1E+02 0.013 25.8 19.8 27 85-111 282-311 (417)
183 KOG0640 mRNA cleavage stimulat 29.6 2.6E+02 0.0057 29.3 8.2 70 24-108 220-289 (430)
184 PF02191 OLF: Olfactomedin-lik 29.2 5.8E+02 0.013 25.3 12.2 69 85-165 174-247 (250)
185 KOG0285 Pleiotropic regulator 29.0 7.4E+02 0.016 26.5 16.9 96 21-117 152-275 (460)
186 KOG0973 Histone transcription 28.9 1.8E+02 0.004 34.3 7.8 69 22-108 131-199 (942)
187 PF08662 eIF2A: Eukaryotic tra 28.5 4.9E+02 0.011 24.3 14.7 72 23-115 62-138 (194)
188 KOG2110 Uncharacterized conser 28.5 2.8E+02 0.0062 29.4 8.4 72 22-108 175-246 (391)
189 PF01453 B_lectin: D-mannose b 27.7 3E+02 0.0066 23.6 7.4 58 23-107 20-77 (114)
190 KOG1407 WD40 repeat protein [F 27.7 6.8E+02 0.015 25.7 12.2 74 82-173 149-225 (313)
191 KOG1445 Tumor-specific antigen 27.5 2.8E+02 0.0062 31.6 8.6 30 21-50 721-750 (1012)
192 PF14870 PSII_BNR: Photosynthe 27.4 6.9E+02 0.015 25.6 11.5 26 82-108 188-213 (302)
193 PRK12817 flgG flagellar basal 27.3 2.6E+02 0.0056 27.7 7.8 30 21-52 86-115 (260)
194 KOG0278 Serine/threonine kinas 27.2 6.9E+02 0.015 25.6 13.5 72 80-166 221-296 (334)
195 KOG0306 WD40-repeat-containing 26.3 6.4E+02 0.014 29.4 11.1 67 84-168 596-665 (888)
196 KOG0271 Notchless-like WD40 re 26.1 8.5E+02 0.019 26.3 11.6 31 21-51 158-188 (480)
197 TIGR03075 PQQ_enz_alc_DH PQQ-d 25.7 9.1E+02 0.02 26.5 13.0 75 31-115 69-144 (527)
198 COG4946 Uncharacterized protei 24.9 9.9E+02 0.021 26.6 19.3 26 25-50 280-305 (668)
199 COG0823 TolB Periplasmic compo 24.8 8.8E+02 0.019 26.0 16.2 23 150-172 307-329 (425)
200 cd00216 PQQ_DH Dehydrogenases 24.7 8.9E+02 0.019 26.0 12.5 72 31-114 61-133 (488)
201 PLN00181 protein SPA1-RELATED; 24.2 1.1E+03 0.024 26.9 17.2 69 24-110 536-606 (793)
202 KOG0282 mRNA splicing factor [ 24.1 2.7E+02 0.0058 30.5 7.4 73 25-111 390-463 (503)
203 PF15492 Nbas_N: Neuroblastoma 24.0 5.7E+02 0.012 26.1 9.4 30 145-174 51-80 (282)
204 PF00930 DPPIV_N: Dipeptidyl p 24.0 92 0.002 31.8 4.0 61 31-111 22-82 (353)
205 PF07433 DUF1513: Protein of u 23.7 8.2E+02 0.018 25.3 19.6 147 19-188 97-268 (305)
206 PRK12818 flgG flagellar basal 23.4 3.4E+02 0.0074 26.9 7.8 30 21-52 90-119 (256)
207 PRK12694 flgG flagellar basal 23.2 7.4E+02 0.016 24.5 10.3 29 21-51 90-118 (260)
208 KOG1273 WD40 repeat protein [G 23.1 9E+02 0.02 25.5 12.0 68 23-108 26-93 (405)
209 KOG2919 Guanine nucleotide-bin 22.3 9.5E+02 0.02 25.4 11.2 30 79-109 157-186 (406)
210 KOG2106 Uncharacterized conser 21.9 1.1E+03 0.025 26.2 16.2 31 138-168 416-447 (626)
211 PF10647 Gmad1: Lipoprotein Lp 21.8 7.3E+02 0.016 24.2 9.7 65 22-107 25-92 (253)
212 KOG0641 WD40 repeat protein [G 21.6 5.7E+02 0.012 25.7 8.6 70 24-111 235-304 (350)
213 KOG0265 U5 snRNP-specific prot 21.6 9.3E+02 0.02 25.1 12.0 71 22-109 49-119 (338)
214 PRK12689 flgF flagellar basal 21.6 2.8E+02 0.0061 27.5 6.8 29 21-52 82-110 (253)
No 1
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.70 E-value=6.5e-16 Score=177.70 Aligned_cols=223 Identities=23% Similarity=0.281 Sum_probs=155.5
Q ss_pred CCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCC------CcccCCCCCccCccCCCcceEEEcCCC
Q 013321 20 GMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPE------GYYGHVDGRPRGARMNHPKGLAVDDRG 92 (445)
Q Consensus 20 g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~------G~~G~~dG~~~~a~Ln~P~GIavD~dG 92 (445)
+.+|.||+++++|. |||+|..+++|++++.++ +....++|... ...|..+|....+.|++|.||+++++|
T Consensus 739 ~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t---g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG 815 (1057)
T PLN02919 739 FAQPSGISLSPDLKELYIADSESSSIRALDLKT---GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG 815 (1057)
T ss_pred ccCccEEEEeCCCCEEEEEECCCCeEEEEECCC---CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC
Confidence 36899999999876 999999999999999874 44555554321 123444565666789999999999999
Q ss_pred CEEEEeCCCCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc
Q 013321 93 NIYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD 170 (445)
Q Consensus 93 ~LYVAD~~N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~ 170 (445)
+|||||+.|++|++||.++ +.+++|. |. .|..++....+.|..|.+|+ ++++|.|||+|++|++|++|++....
T Consensus 816 ~LYVADs~N~rIrviD~~tg~v~tiaG~--G~-~G~~dG~~~~a~l~~P~GIa-vd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 816 QIYVADSYNHKIKKLDPATKRVTTLAGT--GK-AGFKDGKALKAQLSEPAGLA-LGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred cEEEEECCCCEEEEEECCCCeEEEEecc--CC-cCCCCCcccccccCCceEEE-EeCCCCEEEEECCCCEEEEEECCCCc
Confidence 9999999999999999765 5666652 21 34556777788999999997 68899999999999999999997753
Q ss_pred e---eec--CCCCccc-------eEEEE-eccceEEEEEEeecCccceeeeccCCCccccCCCCCCCCCCCCCCCCC-CC
Q 013321 171 C---SDN--YDDTFHL-------GIFVL-VAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSA-RP 236 (445)
Q Consensus 171 ~---~~~--~~~g~P~-------gIav~-~~a~~vg~~~~ll~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 236 (445)
. ... .+...|. -+... ....-+..+..+. ..-+.+.+..+..+ .-+++.++|.+|.++.. .+
T Consensus 892 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 967 (1057)
T PLN02919 892 AAEILTLELKGVQPPRPKSKSLKRLRRRSSADTQVIKVDGVT-SLEGDLQLKISLPP---GYHFSKEARSKFEVEVEPEN 967 (1057)
T ss_pred cceeEeeccccccCCCCcccchhhhhhcccccCceeecCCcc-cccceEEEEEECCC---CCccCcCCCceeEEEeccCC
Confidence 3 111 1111111 11011 1122223334433 45568888888876 88899999999987644 23
Q ss_pred CCcCCCCCCCCCCCCccchhhhh
Q 013321 237 PLVPTEDDFEKPEEGFFGSIGRL 259 (445)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~ 259 (445)
.++ .++-.|++.+=|+-
T Consensus 968 ~~~------~~~~~~~~~~~~~~ 984 (1057)
T PLN02919 968 AVD------IDPDEGTLSPDGRA 984 (1057)
T ss_pred ceE------ecCCCceECCCCeE
Confidence 333 34556776555543
No 2
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.62 E-value=1.8e-14 Score=165.88 Aligned_cols=144 Identities=26% Similarity=0.362 Sum_probs=111.0
Q ss_pred CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEe
Q 013321 21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD 98 (445)
Q Consensus 21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD 98 (445)
..|.+|++|+ +|+|||+|+.|+||++++.+ |.+...+|.. |..|..+|.+..+.|+.|.||++|++|+ |||||
T Consensus 568 ~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~----G~~i~~ig~~-g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaD 642 (1057)
T PLN02919 568 KFPGKLAIDLLNNRLFISDSNHNRIVVTDLD----GNFIVQIGST-GEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVAD 642 (1057)
T ss_pred CCCceEEEECCCCeEEEEECCCCeEEEEeCC----CCEEEEEccC-CCcCCCCCchhccccCCCcEEEEeCCCCEEEEEe
Confidence 6799999998 68899999999999999987 5555555542 4566678888889999999999999876 99999
Q ss_pred CCCCEEEEEcCC-C-cEEEecC-cccCCCCCCCC-CccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321 99 TMNMAIRKISDT-G-VTTIAGG-KWSRGVGHVDG-PSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC 171 (445)
Q Consensus 99 ~~N~rIrkfd~d-G-v~tiaGg-~~G~g~G~~dg-p~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~ 171 (445)
+.|++|++||.. + +.++++. ..|. ....+ ......|+.|++|++.+.++.|||+|.++++|++++.....+
T Consensus 643 t~n~~Ir~id~~~~~V~tlag~G~~g~--~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v 717 (1057)
T PLN02919 643 TENHALREIDFVNETVRTLAGNGTKGS--DYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT 717 (1057)
T ss_pred CCCceEEEEecCCCEEEEEeccCcccC--CCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence 999999999954 4 6677663 1111 01111 122345899999975444889999999999999999866443
No 3
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.46 E-value=1.1e-12 Score=147.16 Aligned_cols=167 Identities=26% Similarity=0.326 Sum_probs=120.9
Q ss_pred ecCCcEEEEEecCCCCCCCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCC--CCCccEEEecCCCCc------ccCCCCC
Q 013321 4 FEGGYTVETVFEGSKFGMEPFSVAVSP-SGELLVLDSENSNIYKISTSLS--PYSRPKLVAGSPEGY------YGHVDGR 74 (445)
Q Consensus 4 ~e~G~~v~tv~~Gs~~g~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~--~~G~v~~vaG~~~G~------~G~~dG~ 74 (445)
+.+|...+++--+.....+-+.||++| +|.|||+|+..++|+|+..--. ..+...+++|.+.-| ||+ ++.
T Consensus 390 ~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGD-Gal 468 (1899)
T KOG4659|consen 390 SQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGD-GAL 468 (1899)
T ss_pred cCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCc-chh
Confidence 456666666655555667889999999 9999999999999999964211 235678899987544 553 556
Q ss_pred ccCccCCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC-cEEEecCcccCC--CCCCCC-CccCcccCCCceEEEECCCCe
Q 013321 75 PRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-VTTIAGGKWSRG--VGHVDG-PSEDAKFSNDFDVVYVGSSCS 150 (445)
Q Consensus 75 ~~~a~Ln~P~GIavD~dG~LYVAD~~N~rIrkfd~dG-v~tiaGg~~G~g--~G~~dg-p~~~a~f~~P~gI~~vd~dG~ 150 (445)
+.+|+|..|.||++|.+|+||+||.. +||++|.+| ++++.|...-.. -.+..+ .-.+.++.||+++++.+-+++
T Consensus 469 A~dA~L~~PkGIa~dk~g~lYfaD~t--~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdns 546 (1899)
T KOG4659|consen 469 AQDAQLIFPKGIAFDKMGNLYFADGT--RIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNS 546 (1899)
T ss_pred cccceeccCCceeEccCCcEEEeccc--EEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCe
Confidence 78999999999999999999999975 599999999 667655322110 001111 133457899999998788899
Q ss_pred EEEEEC-------CCCeEEEEECCCCceee
Q 013321 151 LLVIDR-------GNQAIREIQLHDDDCSD 173 (445)
Q Consensus 151 LyVaD~-------gn~rIr~i~l~~~~~~~ 173 (445)
|||.|. -+++|++|.-....|..
T Consensus 547 l~Vld~nvvlrit~~~rV~Ii~GrP~hC~~ 576 (1899)
T KOG4659|consen 547 LLVLDTNVVLRITVVHRVRIILGRPTHCDL 576 (1899)
T ss_pred EEEeecceEEEEccCccEEEEcCCcccccc
Confidence 999995 35666655555555554
No 4
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.32 E-value=1.1e-10 Score=112.34 Aligned_cols=143 Identities=22% Similarity=0.220 Sum_probs=98.5
Q ss_pred cEEEEEecC---CCCCCCceEEEEcCCCcEEEEeCCC--------CeEEEEeCCCCCCCccEEEecCCCCcccCCCCCcc
Q 013321 8 YTVETVFEG---SKFGMEPFSVAVSPSGELLVLDSEN--------SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPR 76 (445)
Q Consensus 8 ~~v~tv~~G---s~~g~~P~gIAVdpdG~LYVaDs~n--------~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~ 76 (445)
..++.++.. ......|++++++++|+|||+|... ++|++++++ +++..+..
T Consensus 70 g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~----~~~~~~~~-------------- 131 (246)
T PF08450_consen 70 GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD----GKVTVVAD-------------- 131 (246)
T ss_dssp TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT----SEEEEEEE--------------
T ss_pred CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC----CeEEEEec--------------
Confidence 345555553 2245789999999999999999765 579999987 45555443
Q ss_pred CccCCCcceEEEcCCCC-EEEEeCCCCEEEEEcCC--Cc-----EEEecCcccCCCCCCCCCccCcccCCCceEEEECCC
Q 013321 77 GARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDT--GV-----TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSS 148 (445)
Q Consensus 77 ~a~Ln~P~GIavD~dG~-LYVAD~~N~rIrkfd~d--Gv-----~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~d 148 (445)
.|..|+||+++++|. |||+|+.+++|.+|+.+ +. .+++.... ....|-+++ +|.+
T Consensus 132 --~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~pDG~~-vD~~ 194 (246)
T PF08450_consen 132 --GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG--------------GPGYPDGLA-VDSD 194 (246)
T ss_dssp --EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS--------------SSCEEEEEE-EBTT
T ss_pred --CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC--------------CCcCCCcce-EcCC
Confidence 277899999999997 99999999999999953 32 11111000 012467775 7999
Q ss_pred CeEEEEECCCCeEEEEECCCCceeecCC-CCccceEEE
Q 013321 149 CSLLVIDRGNQAIREIQLHDDDCSDNYD-DTFHLGIFV 185 (445)
Q Consensus 149 G~LyVaD~gn~rIr~i~l~~~~~~~~~~-~g~P~gIav 185 (445)
|+|||++.++++|.+|++++........ ...|..+++
T Consensus 195 G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 195 GNLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp S-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEE
T ss_pred CCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEE
Confidence 9999999999999999999765543221 235555544
No 5
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.30 E-value=7.1e-12 Score=140.71 Aligned_cols=141 Identities=25% Similarity=0.413 Sum_probs=116.7
Q ss_pred CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccc-----CCCCCccCccCCCcceEEEcCCCCE
Q 013321 21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYG-----HVDGRPRGARMNHPKGLAVDDRGNI 94 (445)
Q Consensus 21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G-----~~dG~~~~a~Ln~P~GIavD~dG~L 94 (445)
.+|+.+||+| |+.|||.| +|.|++++.+ +++..++|.|..|.- .....+.++.+-.|.+|+|..+|.|
T Consensus 533 eWPT~LaV~Pmdnsl~Vld--~nvvlrit~~----~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~l 606 (1899)
T KOG4659|consen 533 EWPTSLAVDPMDNSLLVLD--TNVVLRITVV----HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGAL 606 (1899)
T ss_pred ecccceeecCCCCeEEEee--cceEEEEccC----ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceE
Confidence 6899999999 99999999 8899999998 899999999865522 1223456778889999999999999
Q ss_pred EEEeCCC---CEEEEEcCCC-cEEEecCcccCCC------C---CCCCCccCcccCCCceEEEECCCCeEEEEECCCCeE
Q 013321 95 YIADTMN---MAIRKISDTG-VTTIAGGKWSRGV------G---HVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAI 161 (445)
Q Consensus 95 YVAD~~N---~rIrkfd~dG-v~tiaGg~~G~g~------G---~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rI 161 (445)
|||++.. +|||++.++| +..++|+++-..| . ..+..+.+|+|+.|..++ +.++|.|||||.+|-||
T Consensus 607 yvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~ala-VsPdg~v~IAD~gN~rI 685 (1899)
T KOG4659|consen 607 YVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALA-VSPDGDVIIADSGNSRI 685 (1899)
T ss_pred EEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEE-ECCCCcEEEecCCchhh
Confidence 9999974 6789999999 7888887764332 1 134468889999999996 89999999999999999
Q ss_pred EEEECCC
Q 013321 162 REIQLHD 168 (445)
Q Consensus 162 r~i~l~~ 168 (445)
+.++..-
T Consensus 686 r~Vs~~~ 692 (1899)
T KOG4659|consen 686 RKVSARM 692 (1899)
T ss_pred hhhhhcc
Confidence 9988543
No 6
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.04 E-value=4.6e-09 Score=101.13 Aligned_cols=137 Identities=24% Similarity=0.350 Sum_probs=92.2
Q ss_pred ceEEEEc-CCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321 23 PFSVAVS-PSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 101 (445)
Q Consensus 23 P~gIAVd-pdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N 101 (445)
|.|++++ ++|.|||++..+ +.+++... +++..++.... ....++.|+++++|++|+|||+|...
T Consensus 42 ~~G~~~~~~~g~l~v~~~~~--~~~~d~~~---g~~~~~~~~~~----------~~~~~~~~ND~~vd~~G~ly~t~~~~ 106 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSGG--IAVVDPDT---GKVTVLADLPD----------GGVPFNRPNDVAVDPDGNLYVTDSGG 106 (246)
T ss_dssp EEEEEEECTTSEEEEEETTC--EEEEETTT---TEEEEEEEEET----------TCSCTEEEEEEEE-TTS-EEEEEECC
T ss_pred CceEEEEccCCEEEEEEcCc--eEEEecCC---CcEEEEeeccC----------CCcccCCCceEEEcCCCCEEEEecCC
Confidence 8888888 688888888543 33446552 55655554321 01247899999999999999999875
Q ss_pred --------CEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce--
Q 013321 102 --------MAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC-- 171 (445)
Q Consensus 102 --------~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~-- 171 (445)
.+|.+++.++...... ..+..|++|++......|||+|+.+++|++++++....
T Consensus 107 ~~~~~~~~g~v~~~~~~~~~~~~~----------------~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~ 170 (246)
T PF08450_consen 107 GGASGIDPGSVYRIDPDGKVTVVA----------------DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL 170 (246)
T ss_dssp BCTTCGGSEEEEEEETTSEEEEEE----------------EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE
T ss_pred CccccccccceEEECCCCeEEEEe----------------cCcccccceEECCcchheeecccccceeEEEeccccccce
Confidence 5799999887433221 23667999986444447999999999999999864322
Q ss_pred ----ee---cCCCCccceEEEEeccc
Q 013321 172 ----SD---NYDDTFHLGIFVLVAAA 190 (445)
Q Consensus 172 ----~~---~~~~g~P~gIav~~~a~ 190 (445)
.. ....+.|.|++++..+.
T Consensus 171 ~~~~~~~~~~~~~g~pDG~~vD~~G~ 196 (246)
T PF08450_consen 171 SNRRVFIDFPGGPGYPDGLAVDSDGN 196 (246)
T ss_dssp EEEEEEEE-SSSSCEEEEEEEBTTS-
T ss_pred eeeeeEEEcCCCCcCCCcceEcCCCC
Confidence 11 22234699999987543
No 7
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.81 E-value=3e-07 Score=93.20 Aligned_cols=124 Identities=20% Similarity=0.243 Sum_probs=83.3
Q ss_pred CCceEEEEcCCCcEEEEeCC-----------CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEc
Q 013321 21 MEPFSVAVSPSGELLVLDSE-----------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD 89 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~-----------n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD 89 (445)
+.|+++.|+++|.+||.|.. .++|+++++. |.+..+... .+..|+|||++
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~----g~~~~l~~~---------------~~~~~NGla~S 171 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD----GGVVRLLDD---------------DLTIPNGLAFS 171 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC----CCEEEeecC---------------cEEecCceEEC
Confidence 78999999999999999987 2578888875 333333221 26789999999
Q ss_pred CCC-CEEEEeCCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCC-CeEEEEECC
Q 013321 90 DRG-NIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-QAIREIQLH 167 (445)
Q Consensus 90 ~dG-~LYVAD~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn-~rIr~i~l~ 167 (445)
+|| .|||+|+..++|.+++-+-.....++... .... ...=..|-++ ++|.+|+||++-..+ .+|.+|+++
T Consensus 172 pDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~----~~~~---~~~~G~PDG~-~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 172 PDGKTLYVADTPANRIHRYDLDPATGPIGGRRG----FVDF---DEEPGLPDGM-AVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred CCCCEEEEEeCCCCeEEEEecCcccCccCCcce----EEEc---cCCCCCCCce-EEeCCCCEEEecccCCceEEEECCC
Confidence 999 59999999999999985520000000000 0000 0000245555 589999999755554 599999998
Q ss_pred CCce
Q 013321 168 DDDC 171 (445)
Q Consensus 168 ~~~~ 171 (445)
+...
T Consensus 244 G~l~ 247 (307)
T COG3386 244 GKLL 247 (307)
T ss_pred CcEE
Confidence 6443
No 8
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.66 E-value=1.4e-06 Score=89.72 Aligned_cols=150 Identities=15% Similarity=0.151 Sum_probs=91.6
Q ss_pred CcEEEEEecCCCCCCCceEEEEcCCCcEEEEeCCC------------CeEEEEeCCCCCCCc---cEEEecCCCCcccCC
Q 013321 7 GYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSEN------------SNIYKISTSLSPYSR---PKLVAGSPEGYYGHV 71 (445)
Q Consensus 7 G~~v~tv~~Gs~~g~~P~gIAVdpdG~LYVaDs~n------------~rI~kid~dg~~~G~---v~~vaG~~~G~~G~~ 71 (445)
|+.++.++..... ..|.+|++|++|+|||++..+ +||++++... -.|. .++++.
T Consensus 1 Gf~~~l~A~~p~~-~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~d-gdG~~d~~~vfa~--------- 69 (367)
T TIGR02604 1 GFKVTLFAAEPLL-RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDAD-GDGKYDKSNVFAE--------- 69 (367)
T ss_pred CcEEEEEECCCcc-CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCC-CCCCcceeEEeec---------
Confidence 5667777765443 689999999999999998522 4888886421 0122 233332
Q ss_pred CCCccCccCCCcceEEEcCCCCEEEEeCCCCEEEEE-cCCC-------cEEEecCcccCCCCCCCCCccCcccCCCceEE
Q 013321 72 DGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKI-SDTG-------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVV 143 (445)
Q Consensus 72 dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~rIrkf-d~dG-------v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~ 143 (445)
.|+.|.||++.++| |||++. .+|.++ +.+| ..++..+. +. + .......+++++
T Consensus 70 -------~l~~p~Gi~~~~~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~-~~--~------~~~~~~~~~~l~ 130 (367)
T TIGR02604 70 -------ELSMVTGLAVAVGG-VYVATP--PDILFLRDKDGDDKADGEREVLLSGF-GG--Q------INNHHHSLNSLA 130 (367)
T ss_pred -------CCCCccceeEecCC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEcc-CC--C------CCcccccccCce
Confidence 27789999999999 999985 468888 4433 12222111 00 0 000123466776
Q ss_pred EECCCCeEEEEECCC-------------------CeEEEEECCCCceee-cCCCCccceEEEEe
Q 013321 144 YVGSSCSLLVIDRGN-------------------QAIREIQLHDDDCSD-NYDDTFHLGIFVLV 187 (445)
Q Consensus 144 ~vd~dG~LyVaD~gn-------------------~rIr~i~l~~~~~~~-~~~~g~P~gIav~~ 187 (445)
.+++|.|||++..+ +.|+++++++..... ..+.-.|.|+++..
T Consensus 131 -~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~ 193 (367)
T TIGR02604 131 -WGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDS 193 (367)
T ss_pred -ECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECC
Confidence 68999999988732 467777776643322 22233455555543
No 9
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.54 E-value=1e-07 Score=63.09 Aligned_cols=28 Identities=46% Similarity=0.794 Sum_probs=26.6
Q ss_pred CCCcceEEEcCCCCEEEEeCCCCEEEEE
Q 013321 80 MNHPKGLAVDDRGNIYIADTMNMAIRKI 107 (445)
Q Consensus 80 Ln~P~GIavD~dG~LYVAD~~N~rIrkf 107 (445)
|+.|.|||++++|+|||||++|+||++|
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 6789999999999999999999999987
No 10
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.41 E-value=1e-05 Score=80.45 Aligned_cols=152 Identities=15% Similarity=0.205 Sum_probs=93.8
Q ss_pred CCCceEEEEcCCCcEEEEeCCCCeEEEEeCCC-CC----------CCccEEEecCCCCc------ccCCCCCcc------
Q 013321 20 GMEPFSVAVSPSGELLVLDSENSNIYKISTSL-SP----------YSRPKLVAGSPEGY------YGHVDGRPR------ 76 (445)
Q Consensus 20 g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg-~~----------~G~v~~vaG~~~G~------~G~~dG~~~------ 76 (445)
|..|++|.++|||..||+|+++ .|.|+++.. .. ++.+.+.+-.+.|. .|. -|.+.
T Consensus 103 Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~-yGrLdPa~~~i 180 (353)
T COG4257 103 GASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGA-YGRLDPARNVI 180 (353)
T ss_pred CCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeecccc-ceecCcccCce
Confidence 4689999999999999999988 999998742 11 11111111111111 111 11111
Q ss_pred ----CccCCCcceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeE
Q 013321 77 ----GARMNHPKGLAVDDRGNIYIADTMNMAIRKISD-TGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSL 151 (445)
Q Consensus 77 ----~a~Ln~P~GIavD~dG~LYVAD~~N~rIrkfd~-dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~L 151 (445)
.-+=-.|.|||+.++|.+|++....+.|-+||+ +|...+.--. ++.-..--. +.+|+-|.+
T Consensus 181 ~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P-------------~~~~~gsRr-iwsdpig~~ 246 (353)
T COG4257 181 SVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQP-------------NALKAGSRR-IWSDPIGRA 246 (353)
T ss_pred eeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCC-------------Ccccccccc-cccCccCcE
Confidence 113347899999999999999999999999995 4422111100 000001112 357899999
Q ss_pred EEEECCCCeEEEEECCCCceee---cCCCCccceEEEEe
Q 013321 152 LVIDRGNQAIREIQLHDDDCSD---NYDDTFHLGIFVLV 187 (445)
Q Consensus 152 yVaD~gn~rIr~i~l~~~~~~~---~~~~g~P~gIav~~ 187 (445)
|+++.++.++.+|++....... ......|..+.++.
T Consensus 247 wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~ 285 (353)
T COG4257 247 WITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDR 285 (353)
T ss_pred EEeccCCceeeEeCcccccceeeeCCCCCCCcceeeecc
Confidence 9999999999999987654332 12223556665543
No 11
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.41 E-value=4.4e-06 Score=83.01 Aligned_cols=136 Identities=20% Similarity=0.185 Sum_probs=93.5
Q ss_pred CCCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEe
Q 013321 19 FGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD 98 (445)
Q Consensus 19 ~g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD 98 (445)
.|..|+.|+.++||.+|+++.+.+.|-++++.+ |++.++.-.. =.+|++|.+++||..||+|
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~t---Gev~~ypLg~---------------Ga~Phgiv~gpdg~~Witd 121 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPAT---GEVETYPLGS---------------GASPHGIVVGPDGSAWITD 121 (353)
T ss_pred CCCCccccccCCCCceEEecCccccceecCCCC---CceEEEecCC---------------CCCCceEEECCCCCeeEec
Confidence 347899999999999999999999999999984 7777665321 1389999999999999999
Q ss_pred CCCCEEEEEcC-CC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--c
Q 013321 99 TMNMAIRKISD-TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--N 174 (445)
Q Consensus 99 ~~N~rIrkfd~-dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~--~ 174 (445)
+++ .|+|+|. ++ ++++.- ......+.|+. ++.|+.|+||++.. ++.--++++....... .
T Consensus 122 ~~~-aI~R~dpkt~evt~f~l----------p~~~a~~nlet----~vfD~~G~lWFt~q-~G~yGrLdPa~~~i~vfpa 185 (353)
T COG4257 122 TGL-AIGRLDPKTLEVTRFPL----------PLEHADANLET----AVFDPWGNLWFTGQ-IGAYGRLDPARNVISVFPA 185 (353)
T ss_pred Ccc-eeEEecCcccceEEeec----------ccccCCCcccc----eeeCCCccEEEeec-cccceecCcccCceeeecc
Confidence 998 9999997 44 443311 11111222322 23699999999876 3333355544433322 2
Q ss_pred CCCCccceEEEEec
Q 013321 175 YDDTFHLGIFVLVA 188 (445)
Q Consensus 175 ~~~g~P~gIav~~~ 188 (445)
...+.|.||.+...
T Consensus 186 PqG~gpyGi~atpd 199 (353)
T COG4257 186 PQGGGPYGICATPD 199 (353)
T ss_pred CCCCCCcceEECCC
Confidence 34556888877543
No 12
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=1e-05 Score=83.93 Aligned_cols=140 Identities=22% Similarity=0.368 Sum_probs=98.8
Q ss_pred CCCceEEEEcCCC-cEEEEeC--CCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EE
Q 013321 20 GMEPFSVAVSPSG-ELLVLDS--ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IY 95 (445)
Q Consensus 20 g~~P~gIAVdpdG-~LYVaDs--~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LY 95 (445)
+..|.+++++++| .+||+|. .++.|.+++..+. .+... .+. | ..|.+++++++|+ +|
T Consensus 115 G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~---~~~~~--~~v-------G-------~~P~~~a~~p~g~~vy 175 (381)
T COG3391 115 GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN---KVTAT--IPV-------G-------NTPTGVAVDPDGNKVY 175 (381)
T ss_pred ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC---eEEEE--Eec-------C-------CCcceEEECCCCCeEE
Confidence 4589999999977 6999999 5799999998742 22222 111 1 1678999999999 99
Q ss_pred EEeCCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCe-EEEEECCC--CeEEEEECCCCcee
Q 013321 96 IADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDRGN--QAIREIQLHDDDCS 172 (445)
Q Consensus 96 VAD~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~-LyVaD~gn--~rIr~i~l~~~~~~ 172 (445)
|+|..+++|..||..+...+- +.. ......+..|.+++ ++++|. +||++..+ ++|.+++.......
T Consensus 176 v~~~~~~~v~vi~~~~~~v~~-~~~---------~~~~~~~~~P~~i~-v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~ 244 (381)
T COG3391 176 VTNSDDNTVSVIDTSGNSVVR-GSV---------GSLVGVGTGPAGIA-VDPDGNRVYVANDGSGSNNVLKIDTATGNVT 244 (381)
T ss_pred EEecCCCeEEEEeCCCcceec-ccc---------ccccccCCCCceEE-ECCCCCEEEEEeccCCCceEEEEeCCCceEE
Confidence 999999999999988865542 111 01233567889987 677775 99999988 79999998775443
Q ss_pred ec--CCCC-ccceEEEEecc
Q 013321 173 DN--YDDT-FHLGIFVLVAA 189 (445)
Q Consensus 173 ~~--~~~g-~P~gIav~~~a 189 (445)
.. .... .|.+++....+
T Consensus 245 ~~~~~~~~~~~~~v~~~p~g 264 (381)
T COG3391 245 ATDLPVGSGAPRGVAVDPAG 264 (381)
T ss_pred EeccccccCCCCceeECCCC
Confidence 32 1112 46666665543
No 13
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.36 E-value=1.8e-05 Score=80.43 Aligned_cols=152 Identities=16% Similarity=0.226 Sum_probs=99.2
Q ss_pred ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC-
Q 013321 23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM- 100 (445)
Q Consensus 23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v-~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~- 100 (445)
+.++.++..|.|++++.+-.++.. +. +.. +.++-... ..+++.|+++.++++|.+||.|..
T Consensus 69 ~~~~~~d~~g~Lv~~~~g~~~~~~-~~-----~~~~t~~~~~~~-----------~~~~~r~ND~~v~pdG~~wfgt~~~ 131 (307)
T COG3386 69 SSGALIDAGGRLIACEHGVRLLDP-DT-----GGKITLLAEPED-----------GLPLNRPNDGVVDPDGRIWFGDMGY 131 (307)
T ss_pred ccceeecCCCeEEEEccccEEEec-cC-----CceeEEeccccC-----------CCCcCCCCceeEcCCCCEEEeCCCc
Confidence 678888888888888865433332 22 233 44443321 125789999999999999999987
Q ss_pred ----------CCEEEEEcCCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCC
Q 013321 101 ----------NMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHD 168 (445)
Q Consensus 101 ----------N~rIrkfd~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~ 168 (445)
..+|.++|++| +..+.. ..+..|++|++ ++++ .||++|+..++|++++.+.
T Consensus 132 ~~~~~~~~~~~G~lyr~~p~g~~~~l~~----------------~~~~~~NGla~-SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 132 FDLGKSEERPTGSLYRVDPDGGVVRLLD----------------DDLTIPNGLAF-SPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred cccCccccCCcceEEEEcCCCCEEEeec----------------CcEEecCceEE-CCCCCEEEEEeCCCCeEEEEecCc
Confidence 24688888655 333311 12667899975 5566 9999999999999999872
Q ss_pred ---Cc-----eee-cCCCCccceEEEEeccceEEEEEEeecCccceeeeccC
Q 013321 169 ---DD-----CSD-NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKD 211 (445)
Q Consensus 169 ---~~-----~~~-~~~~g~P~gIav~~~a~~vg~~~~ll~~~~g~~~~s~~ 211 (445)
.. ... ....|.|.|++++..+.+.. +....+..-..|+.+
T Consensus 195 ~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~---~a~~~g~~v~~~~pd 243 (307)
T COG3386 195 ATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWV---AAVWGGGRVVRFNPD 243 (307)
T ss_pred ccCccCCcceEEEccCCCCCCCceEEeCCCCEEE---ecccCCceEEEECCC
Confidence 11 111 12458999999998765442 222222334455555
No 14
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.30 E-value=2.2e-05 Score=80.90 Aligned_cols=129 Identities=19% Similarity=0.268 Sum_probs=81.7
Q ss_pred CCceEEEEcCCCcEEEEeCCC-------------------CeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCC
Q 013321 21 MEPFSVAVSPSGELLVLDSEN-------------------SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMN 81 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n-------------------~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln 81 (445)
..++++++++||.|||++..+ +.|+++++++ +++..++. .++
T Consensus 124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg---~~~e~~a~----------------G~r 184 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG---GKLRVVAH----------------GFQ 184 (367)
T ss_pred ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC---CeEEEEec----------------CcC
Confidence 348899999999999988732 5688888874 33444432 278
Q ss_pred CcceEEEcCCCCEEEEeCCCCEEEEEcCC------CcEEEecCc-ccCCCC---CC-------------CCCccCcccCC
Q 013321 82 HPKGLAVDDRGNIYIADTMNMAIRKISDT------GVTTIAGGK-WSRGVG---HV-------------DGPSEDAKFSN 138 (445)
Q Consensus 82 ~P~GIavD~dG~LYVAD~~N~rIrkfd~d------Gv~tiaGg~-~G~g~G---~~-------------dgp~~~a~f~~ 138 (445)
+|.||++|++|+||++|..+....+++.- |-..+.+.. .....+ .. ........+..
T Consensus 185 np~Gl~~d~~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a 264 (367)
T TIGR02604 185 NPYGHSVDSWGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTA 264 (367)
T ss_pred CCccceECCCCCEEEEccCCCceeEEcccccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCcc
Confidence 99999999999999999876655555421 100000000 000000 00 00001112347
Q ss_pred CceEEEECC-------CCeEEEEECCCCeEEEEECCC
Q 013321 139 DFDVVYVGS-------SCSLLVIDRGNQAIREIQLHD 168 (445)
Q Consensus 139 P~gI~~vd~-------dG~LyVaD~gn~rIr~i~l~~ 168 (445)
|.++++... .|.++|++...++|.++.++.
T Consensus 265 p~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l~~ 301 (367)
T TIGR02604 265 PCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSLEP 301 (367)
T ss_pred ccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEeec
Confidence 888887643 479999999999999999864
No 15
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=2.8e-05 Score=80.75 Aligned_cols=135 Identities=22% Similarity=0.236 Sum_probs=97.5
Q ss_pred CCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCC-CEEEEe
Q 013321 21 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG-NIYIAD 98 (445)
Q Consensus 21 ~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG-~LYVAD 98 (445)
..|.++++++.|. +||++..+++|.+++.... ++...... | ..|.+++++++| .+||+|
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~---~~~~~~~v-----G-----------~~P~~~~~~~~~~~vYV~n 134 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN---TVLGSIPV-----G-----------LGPVGLAVDPDGKYVYVAN 134 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCccc---ceeeEeee-----c-----------cCCceEEECCCCCEEEEEe
Confidence 6799999999777 9999999999999985421 11111111 1 279999999988 599999
Q ss_pred C--CCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCe-EEEEECCCCeEEEEECCCCceee--
Q 013321 99 T--MNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDRGNQAIREIQLHDDDCSD-- 173 (445)
Q Consensus 99 ~--~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~-LyVaD~gn~rIr~i~l~~~~~~~-- 173 (445)
. .++.|.+||.....+++....|. .|.+++ ++++|. +||+|..+++|..|+..+.....
T Consensus 135 ~~~~~~~vsvid~~t~~~~~~~~vG~---------------~P~~~a-~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~ 198 (381)
T COG3391 135 AGNGNNTVSVIDAATNKVTATIPVGN---------------TPTGVA-VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGS 198 (381)
T ss_pred cccCCceEEEEeCCCCeEEEEEecCC---------------CcceEE-ECCCCCeEEEEecCCCeEEEEeCCCcceeccc
Confidence 9 57999999987744443322111 467776 677776 99999999999999987765552
Q ss_pred ----cCCCCccceEEEEeccc
Q 013321 174 ----NYDDTFHLGIFVLVAAA 190 (445)
Q Consensus 174 ----~~~~g~P~gIav~~~a~ 190 (445)
......|.++++..++.
T Consensus 199 ~~~~~~~~~~P~~i~v~~~g~ 219 (381)
T COG3391 199 VGSLVGVGTGPAGIAVDPDGN 219 (381)
T ss_pred cccccccCCCCceEEECCCCC
Confidence 33344678888866543
No 16
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.22 E-value=4.5e-06 Score=70.10 Aligned_cols=69 Identities=17% Similarity=0.307 Sum_probs=53.0
Q ss_pred eEEEEcCC-CcEEEEeCC-----------------CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcce
Q 013321 24 FSVAVSPS-GELLVLDSE-----------------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKG 85 (445)
Q Consensus 24 ~gIAVdpd-G~LYVaDs~-----------------n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~G 85 (445)
.+|+|+++ |.||++|+. ++|++++++.+ ++.++++.. |..|+|
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t---~~~~vl~~~----------------L~fpNG 61 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPST---KETTVLLDG----------------LYFPNG 61 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTT---TEEEEEEEE----------------ESSEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCC---CeEEEehhC----------------CCccCe
Confidence 37899997 999999963 48999999984 666677653 789999
Q ss_pred EEEcCCCC-EEEEeCCCCEEEEEcCCC
Q 013321 86 LAVDDRGN-IYIADTMNMAIRKISDTG 111 (445)
Q Consensus 86 IavD~dG~-LYVAD~~N~rIrkfd~dG 111 (445)
|++++|+. |+||++..+||.|+=-.|
T Consensus 62 Vals~d~~~vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 62 VALSPDESFVLVAETGRYRILRYWLKG 88 (89)
T ss_dssp EEE-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred EEEcCCCCEEEEEeccCceEEEEEEeC
Confidence 99999998 999999999999985443
No 17
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.14 E-value=3.7e-06 Score=55.55 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=25.3
Q ss_pred CCceEEEEcCCCcEEEEeCCCCeEEEE
Q 013321 21 MEPFSVAVSPSGELLVLDSENSNIYKI 47 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n~rI~ki 47 (445)
..|.|||++++|+|||+|++|+||+++
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 479999999999999999999999986
No 18
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.12 E-value=3.1e-05 Score=79.95 Aligned_cols=140 Identities=15% Similarity=0.176 Sum_probs=96.6
Q ss_pred CCceEEEEcCCC-cEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321 21 MEPFSVAVSPSG-ELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT 99 (445)
Q Consensus 21 ~~P~gIAVdpdG-~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~ 99 (445)
..|.||+++..| +|||||..- -++++++.| +....++... +| ..+...+++.++++|.||++|+
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g---~~a~~l~~~~-------~G----~~~kf~N~ldI~~~g~vyFTDS 179 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYL-GLLKVGPEG---GLAELLADEA-------EG----KPFKFLNDLDIDPEGVVYFTDS 179 (376)
T ss_pred CCcceEEeccCCCeEEEEecce-eeEEECCCC---Ccceeccccc-------cC----eeeeecCceeEcCCCeEEEecc
Confidence 579999999965 999999754 578898885 3334444332 22 2477788999999999999998
Q ss_pred CC-----------------CEEEEEcCCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeE
Q 013321 100 MN-----------------MAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAI 161 (445)
Q Consensus 100 ~N-----------------~rIrkfd~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rI 161 (445)
.. +|+.++|+.. +++ .-...|..|++|+...+...|+|+++...||
T Consensus 180 Ssk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~----------------VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri 243 (376)
T KOG1520|consen 180 SSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTK----------------VLLDGLYFPNGLALSPDGSFVLVAETTTARI 243 (376)
T ss_pred ccccchhheEEeeecCCCccceEEecCcccchh----------------hhhhcccccccccCCCCCCEEEEEeecccee
Confidence 53 3344444322 111 1123477899998655555889999999999
Q ss_pred EEEECCCCcee----e-cCCCCccceEEEEeccce
Q 013321 162 REIQLHDDDCS----D-NYDDTFHLGIFVLVAAAF 191 (445)
Q Consensus 162 r~i~l~~~~~~----~-~~~~g~P~gIav~~~a~~ 191 (445)
+++-+.+.... + ..--|+|..|.....+.|
T Consensus 244 ~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~f 278 (376)
T KOG1520|consen 244 KRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHF 278 (376)
T ss_pred eeeEecCCccCchhhHhhcCCCCCcceeECCCCCE
Confidence 99998875441 1 224678999998865533
No 19
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.02 E-value=0.00019 Score=73.17 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=92.3
Q ss_pred CCCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEE
Q 013321 19 FGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYI 96 (445)
Q Consensus 19 ~g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYV 96 (445)
.+.+|+.+.++|+|. |||+|.+..+|+.++.+... +.+....... -. .-..|..|+++++|. +||
T Consensus 142 ~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~-~~l~~~~~~~-~~-----------~G~GPRh~~f~pdg~~~Yv 208 (345)
T PF10282_consen 142 EGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT-GKLTPVDSIK-VP-----------PGSGPRHLAFSPDGKYAYV 208 (345)
T ss_dssp SSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS--TEEEEEEEE-CS-----------TTSSEEEEEE-TTSSEEEE
T ss_pred ccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC-ceEEEeeccc-cc-----------cCCCCcEEEEcCCcCEEEE
Confidence 347899999999876 99999999999999876321 2232211100 00 124799999999987 999
Q ss_pred EeCCCCEEEEEcC---CCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCC--c
Q 013321 97 ADTMNMAIRKISD---TGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDD--D 170 (445)
Q Consensus 97 AD~~N~rIrkfd~---dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~~--~ 170 (445)
++..++.|.+|+- +|..+......- .+.....-..|.+|++ +++| .|||++++.+.|..|+++.. .
T Consensus 209 ~~e~s~~v~v~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~~~i~i-spdg~~lyvsnr~~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 209 VNELSNTVSVFDYDPSDGSLTEIQTIST-------LPEGFTGENAPAEIAI-SPDGRFLYVSNRGSNSISVFDLDPATGT 280 (345)
T ss_dssp EETTTTEEEEEEEETTTTEEEEEEEEES-------CETTSCSSSSEEEEEE--TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred ecCCCCcEEEEeecccCCceeEEEEeee-------ccccccccCCceeEEE-ecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence 9999999998883 342222111000 0000111147888874 5555 79999999999999998542 2
Q ss_pred eee----cCCCCccceEEEEecc
Q 013321 171 CSD----NYDDTFHLGIFVLVAA 189 (445)
Q Consensus 171 ~~~----~~~~g~P~gIav~~~a 189 (445)
... ......|.++++....
T Consensus 281 l~~~~~~~~~G~~Pr~~~~s~~g 303 (345)
T PF10282_consen 281 LTLVQTVPTGGKFPRHFAFSPDG 303 (345)
T ss_dssp EEEEEEEEESSSSEEEEEE-TTS
T ss_pred eEEEEEEeCCCCCccEEEEeCCC
Confidence 211 1223358888885543
No 20
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=97.96 E-value=5e-05 Score=83.99 Aligned_cols=117 Identities=21% Similarity=0.198 Sum_probs=88.4
Q ss_pred CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321 21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD 98 (445)
Q Consensus 21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD 98 (445)
.+|.|||||- .-++|.+|+.+.+|-+..++|+. -+++.-. .|-+|.+|++|+ .|+||.+|
T Consensus 1068 ~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~---rkvLf~t---------------dLVNPR~iv~D~~rgnLYwtD 1129 (1289)
T KOG1214|consen 1068 ISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSE---RKVLFYT---------------DLVNPRAIVVDPIRGNLYWTD 1129 (1289)
T ss_pred CCccceeeeeccceeeeeccccchhheeecCCce---eeEEEee---------------cccCcceEEeecccCceeecc
Confidence 6899999998 45799999999999999888642 1222211 377999999999 88899999
Q ss_pred CC--CCEEEEEcCCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc
Q 013321 99 TM--NMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD 170 (445)
Q Consensus 99 ~~--N~rIrkfd~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~ 170 (445)
+. |-.|-..+.|| ...|.. ..-+-.|++|.++.-...|-.+|.|++|+-.+..++..
T Consensus 1130 WnRenPkIets~mDG~NrRili---------------n~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~g 1189 (1289)
T KOG1214|consen 1130 WNRENPKIETSSMDGENRRILI---------------NTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTG 1189 (1289)
T ss_pred ccccCCcceeeccCCccceEEe---------------ecccCCCCCceeCcccceeeEEecCCcceeEecCCCCc
Confidence 97 77899999888 222211 11234688887655556788899999999999887744
No 21
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.94 E-value=0.00041 Score=69.47 Aligned_cols=143 Identities=13% Similarity=0.132 Sum_probs=86.8
Q ss_pred CCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEE
Q 013321 20 GMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA 97 (445)
Q Consensus 20 g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA 97 (445)
+..|.+++++|+|. |||++...+.|..++.+.. .+.+..+.-.. ..+....+ -.+|.+|+++++|. |||+
T Consensus 174 g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~~~~~~~~-~~p~~~~~------~~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 174 GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEIECVQTLD-MMPADFSD------TRWAADIHITPDGRHLYAC 245 (330)
T ss_pred CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCEEEEEEEe-cCCCcCCC------CccceeEEECCCCCEEEEe
Confidence 46799999999887 8899988899888876521 12222221100 00000001 13577899999998 9999
Q ss_pred eCCCCEEEEEc--CCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCC--ce
Q 013321 98 DTMNMAIRKIS--DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDD--DC 171 (445)
Q Consensus 98 D~~N~rIrkfd--~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~~--~~ 171 (445)
+...+.|..|+ .++ ..++.+.. . . -..|.++. ++++| .|||+..+++.|..|..+.. ..
T Consensus 246 ~~~~~~I~v~~i~~~~~~~~~~~~~-~--~-----------~~~p~~~~-~~~dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 246 DRTASLISVFSVSEDGSVLSFEGHQ-P--T-----------ETQPRGFN-IDHSGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred cCCCCeEEEEEEeCCCCeEEEeEEE-e--c-----------cccCCceE-ECCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 98888888886 344 33322210 0 0 02577776 45555 89999998899988876532 22
Q ss_pred ee---cCCCCccceEEE
Q 013321 172 SD---NYDDTFHLGIFV 185 (445)
Q Consensus 172 ~~---~~~~g~P~gIav 185 (445)
.. ......|.+|++
T Consensus 311 ~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 311 TELGRYAVGQGPMWVSV 327 (330)
T ss_pred EEccccccCCCceEEEE
Confidence 22 122345666665
No 22
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.92 E-value=0.00032 Score=71.57 Aligned_cols=128 Identities=16% Similarity=0.202 Sum_probs=84.0
Q ss_pred CCCCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EE
Q 013321 18 KFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IY 95 (445)
Q Consensus 18 ~~g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LY 95 (445)
..+..|..|+++++|. +||++..++.|..++.+.. .|.+..+........+. .+ -+.|.+|+++++|+ ||
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~-~g~~~~~~~~~~~~~~~-~~------~~~~~~i~ispdg~~ly 260 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS-DGSLTEIQTISTLPEGF-TG------ENAPAEIAISPDGRFLY 260 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT-TTEEEEEEEEESCETTS-CS------SSSEEEEEE-TTSSEEE
T ss_pred ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc-CCceeEEEEeeeccccc-cc------cCCceeEEEecCCCEEE
Confidence 4567899999999876 8999999999999876521 14443332211000011 11 24899999999998 99
Q ss_pred EEeCCCCEEEEEcC---CC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCC
Q 013321 96 IADTMNMAIRKISD---TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHD 168 (445)
Q Consensus 96 VAD~~N~rIrkfd~---dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~ 168 (445)
|+..+.+.|..|+- +| +..+..-.. .-..|.++.+ +++| .|||++...+.|..|+.+.
T Consensus 261 vsnr~~~sI~vf~~d~~~g~l~~~~~~~~--------------~G~~Pr~~~~-s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 261 VSNRGSNSISVFDLDPATGTLTLVQTVPT--------------GGKFPRHFAF-SPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEECTTTEEEEEEECTTTTTEEEEEEEEE--------------SSSSEEEEEE--TTSSEEEEEETTTTEEEEEEEET
T ss_pred EEeccCCEEEEEEEecCCCceEEEEEEeC--------------CCCCccEEEE-eCCCCEEEEEecCCCeEEEEEEeC
Confidence 99999999888874 34 333211110 1135888875 5555 7899999999999988653
No 23
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.89 E-value=0.0004 Score=69.54 Aligned_cols=121 Identities=11% Similarity=0.071 Sum_probs=78.3
Q ss_pred CCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEe
Q 013321 21 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD 98 (445)
Q Consensus 21 ~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD 98 (445)
..|.+|+++++|+ ||++....+.|..++.+. .|.+....... . ....|++++++++|. |||++
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~--~g~~~~~~~~~-------~------~~~~~~~~~~~p~g~~l~v~~ 144 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDK--DGIPVAPIQII-------E------GLEGCHSANIDPDNRTLWVPC 144 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECC--CCCCCCceeec-------c------CCCcccEeEeCCCCCEEEEee
Confidence 4799999999886 888888888888886641 12111111100 0 134689999999986 88999
Q ss_pred CCCCEEEEEcCC--CcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECC
Q 013321 99 TMNMAIRKISDT--GVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLH 167 (445)
Q Consensus 99 ~~N~rIrkfd~d--Gv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~ 167 (445)
.+.+.|.++|.+ |......... ...+ .-..|.++++ +++| .|||++...+.|..++++
T Consensus 145 ~~~~~v~v~d~~~~g~l~~~~~~~------~~~~----~g~~p~~~~~-~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 145 LKEDRIRLFTLSDDGHLVAQEPAE------VTTV----EGAGPRHMVF-HPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred CCCCEEEEEEECCCCcccccCCCc------eecC----CCCCCceEEE-CCCCCEEEEEecCCCEEEEEEEe
Confidence 999999999843 3211000000 0000 0134777775 5554 789999999999999876
No 24
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=97.64 E-value=0.00044 Score=76.86 Aligned_cols=140 Identities=18% Similarity=0.151 Sum_probs=104.7
Q ss_pred CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321 21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD 98 (445)
Q Consensus 21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD 98 (445)
.-|.||++|= +--||.+|-..+.|.+-+++| ++.++++.+ .|..|.|||||- ..+||.+|
T Consensus 1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G---~Ep~ti~n~---------------~L~SPEGiAVDh~~Rn~ywtD 1086 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEG---AEPETIVNS---------------GLISPEGIAVDHIRRNMYWTD 1086 (1289)
T ss_pred ceeeeeecccccceEEEeecCCCccccccccC---CCCceeecc---------------cCCCccceeeeeccceeeeec
Confidence 3477888886 445999999999999999886 456666554 388999999997 45699999
Q ss_pred CCCCEEEEEcCCCc-EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEEC--CCCeEEEEECCCCceee--
Q 013321 99 TMNMAIRKISDTGV-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR--GNQAIREIQLHDDDCSD-- 173 (445)
Q Consensus 99 ~~N~rIrkfd~dGv-~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~--gn~rIr~i~l~~~~~~~-- 173 (445)
+.+.+|-+..-+|. ..+.+ ..-|.+|.+|+...-.|+||.+|. .|-.|-..++++..-..
T Consensus 1087 S~lD~IevA~LdG~~rkvLf---------------~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRili 1151 (1289)
T KOG1214|consen 1087 SVLDKIEVALLDGSERKVLF---------------YTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILI 1151 (1289)
T ss_pred cccchhheeecCCceeeEEE---------------eecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEe
Confidence 99999998888882 22211 123678999987777789999996 57888888888865433
Q ss_pred cCCCCccceEEEEeccceEE
Q 013321 174 NYDDTFHLGIFVLVAAAFFG 193 (445)
Q Consensus 174 ~~~~g~P~gIav~~~a~~vg 193 (445)
....++|.|+.++.-.-.+-
T Consensus 1152 n~DigLPNGLtfdpfs~~LC 1171 (1289)
T KOG1214|consen 1152 NTDIGLPNGLTFDPFSKLLC 1171 (1289)
T ss_pred ecccCCCCCceeCcccceee
Confidence 56678999988765433333
No 25
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.50 E-value=0.00051 Score=57.75 Aligned_cols=68 Identities=19% Similarity=0.253 Sum_probs=48.5
Q ss_pred ceEEEcCC-CCEEEEeCC-----------------CCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEE
Q 013321 84 KGLAVDDR-GNIYIADTM-----------------NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVV 143 (445)
Q Consensus 84 ~GIavD~d-G~LYVAD~~-----------------N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~ 143 (445)
++|+|+++ |.||++|+. ++|+.++|+.. ..+++. .|..|+||+
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~-----------------~L~fpNGVa 63 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD-----------------GLYFPNGVA 63 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE-----------------EESSEEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh-----------------CCCccCeEE
Confidence 47899998 999999993 57999999765 334432 366899998
Q ss_pred EECCCCeEEEEECCCCeEEEEECCC
Q 013321 144 YVGSSCSLLVIDRGNQAIREIQLHD 168 (445)
Q Consensus 144 ~vd~dG~LyVaD~gn~rIr~i~l~~ 168 (445)
+..+...|+|+++...||.++-+.|
T Consensus 64 ls~d~~~vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 64 LSPDESFVLVAETGRYRILRYWLKG 88 (89)
T ss_dssp E-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred EcCCCCEEEEEeccCceEEEEEEeC
Confidence 5444446999999999999998765
No 26
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.29 E-value=0.0013 Score=65.00 Aligned_cols=76 Identities=24% Similarity=0.458 Sum_probs=46.8
Q ss_pred CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321 21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT 99 (445)
Q Consensus 21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~ 99 (445)
..|.+|+++| .|+|||....+.+|..++.+ |++.-...-..|..| ....+..|.|||+|++|+|||+.-
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d~~----G~~~~~~~L~~g~~g------l~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELDRQ----GRVVSSLSLDRGFHG------LSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE-TT------EEEEEE-STTGGG-------SS---SEEEEEE-TT--EEEEET
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEECCC----CCEEEEEEeCCcccC------cccccCCccEEEECCCCCEEEEcC
Confidence 5799999999 78999999999999999987 554433322222222 223588999999999999999987
Q ss_pred CCCEEEEE
Q 013321 100 MNMAIRKI 107 (445)
Q Consensus 100 ~N~rIrkf 107 (445)
-| +..+|
T Consensus 241 pN-lfy~f 247 (248)
T PF06977_consen 241 PN-LFYRF 247 (248)
T ss_dssp TT-EEEEE
T ss_pred Cc-eEEEe
Confidence 55 55554
No 27
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=97.28 E-value=0.0039 Score=64.73 Aligned_cols=98 Identities=17% Similarity=0.256 Sum_probs=69.5
Q ss_pred CcceEEEcCCC-CEEEEeCCCCEEEEEcCCC-cE-EEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECC-
Q 013321 82 HPKGLAVDDRG-NIYIADTMNMAIRKISDTG-VT-TIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG- 157 (445)
Q Consensus 82 ~P~GIavD~dG-~LYVAD~~N~rIrkfd~dG-v~-tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~g- 157 (445)
.|-||+++..| +|||||.. --+.+++..| .. .++... .-..+...+++. ++++|.||++|++
T Consensus 116 RPLGl~f~~~ggdL~VaDAY-lGL~~V~p~g~~a~~l~~~~------------~G~~~kf~N~ld-I~~~g~vyFTDSSs 181 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVADAY-LGLLKVGPEGGLAELLADEA------------EGKPFKFLNDLD-IDPEGVVYFTDSSS 181 (376)
T ss_pred CcceEEeccCCCeEEEEecc-eeeEEECCCCCcceeccccc------------cCeeeeecCcee-EcCCCeEEEecccc
Confidence 79999999977 89999986 5688999776 32 222211 122344455665 4669999999964
Q ss_pred ----------------CCeEEEEECCCCcee-ecCCCCccceEEEEeccceEE
Q 013321 158 ----------------NQAIREIQLHDDDCS-DNYDDTFHLGIFVLVAAAFFG 193 (445)
Q Consensus 158 ----------------n~rIr~i~l~~~~~~-~~~~~g~P~gIav~~~a~~vg 193 (445)
++|+.++++...... ...+..+|.|+++.....++.
T Consensus 182 k~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl 234 (376)
T KOG1520|consen 182 KYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVL 234 (376)
T ss_pred ccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEE
Confidence 578888887765543 356677899999988777764
No 28
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=97.28 E-value=0.024 Score=60.69 Aligned_cols=92 Identities=21% Similarity=0.294 Sum_probs=62.5
Q ss_pred eecCCcEEEEEecCCCCCCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCC
Q 013321 3 KFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNH 82 (445)
Q Consensus 3 ~~e~G~~v~tv~~Gs~~g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~ 82 (445)
..+.++.++++++| ...|.+|++.|||+|||+....++|++++..+ +....+.+.+.-.. ......
T Consensus 15 ~~p~~f~~~~va~G---L~~Pw~maflPDG~llVtER~~G~I~~v~~~~---~~~~~~~~l~~v~~--------~~ge~G 80 (454)
T TIGR03606 15 AASENFDKKVLLSG---LNKPWALLWGPDNQLWVTERATGKILRVNPET---GEVKVVFTLPEIVN--------DAQHNG 80 (454)
T ss_pred cCCCCcEEEEEECC---CCCceEEEEcCCCeEEEEEecCCEEEEEeCCC---CceeeeecCCceec--------cCCCCc
Confidence 34678888888874 34699999999999999998779999998653 23333433321100 011346
Q ss_pred cceEEEcCCC-------CEEEEeC---------CCCEEEEEc
Q 013321 83 PKGLAVDDRG-------NIYIADT---------MNMAIRKIS 108 (445)
Q Consensus 83 P~GIavD~dG-------~LYVAD~---------~N~rIrkfd 108 (445)
+.|||++|+- .|||+=+ ...+|.|+.
T Consensus 81 Llglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~ 122 (454)
T TIGR03606 81 LLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYT 122 (454)
T ss_pred eeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEE
Confidence 7799998763 5999832 246788876
No 29
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.23 E-value=0.019 Score=54.78 Aligned_cols=137 Identities=12% Similarity=0.108 Sum_probs=82.0
Q ss_pred CCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEE
Q 013321 21 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA 97 (445)
Q Consensus 21 ~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v-~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA 97 (445)
..|..++++++|. ||++....+.|..++... ++. ..+.... .+. ...-..|.+++++++|. +|++
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~---~~~~~~~~~~~---~~~------~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVAT---RKVIKKITFEI---PGV------HPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCc---ceeeeeeeecc---ccc------ccccCCccceEECCCCCEEEEE
Confidence 3578899999887 456655578899898763 222 1111110 000 00112588999999998 5888
Q ss_pred eCCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCceee-cC
Q 013321 98 DTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDDCSD-NY 175 (445)
Q Consensus 98 D~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~~~~~~-~~ 175 (445)
...+++|.++|...-..+..-.. -..+.++.+ .++| .||++....+.|.++++....+.. ..
T Consensus 225 ~~~~~~i~v~d~~~~~~~~~~~~---------------~~~~~~~~~-~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 225 LGPANRVAVVDAKTYEVLDYLLV---------------GQRVWQLAF-TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred cCCCCeEEEEECCCCcEEEEEEe---------------CCCcceEEE-CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 87788899998643111100000 013556654 5555 566666667899999988766533 33
Q ss_pred CCCccceEEE
Q 013321 176 DDTFHLGIFV 185 (445)
Q Consensus 176 ~~g~P~gIav 185 (445)
....|.+|++
T Consensus 289 ~~~~~~~~~~ 298 (300)
T TIGR03866 289 VGRLPWGVVV 298 (300)
T ss_pred cccccceeEe
Confidence 3456777764
No 30
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.89 E-value=0.025 Score=57.81 Aligned_cols=124 Identities=21% Similarity=0.230 Sum_probs=73.6
Q ss_pred CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCcccCCCCCccCccCCCcceEEEcCC----CCEE
Q 013321 21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR----GNIY 95 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v-~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~d----G~LY 95 (445)
..|.+|++.|||.|||++. .++|++++.++ .. ..+.....-. ........|||++++ +.||
T Consensus 2 ~~P~~~a~~pdG~l~v~e~-~G~i~~~~~~g----~~~~~v~~~~~v~---------~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAER-SGRIWVVDKDG----SLKTPVADLPEVF---------ADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SSEEEEEEETTSCEEEEET-TTEEEEEETTT----EECEEEEE-TTTB---------TSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CCceEEEEeCCCcEEEEeC-CceEEEEeCCC----cCcceeccccccc---------ccccCCcccceeccccCCCCEEE
Confidence 4799999999999999998 89999999763 33 3333322100 111346789999994 8899
Q ss_pred EEeCCC--------CEEEEEcCC-C------cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEEC----
Q 013321 96 IADTMN--------MAIRKISDT-G------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR---- 156 (445)
Q Consensus 96 VAD~~N--------~rIrkfd~d-G------v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~---- 156 (445)
|+-+.. .+|.++..+ + ..++.-+.. ......-.-..|+ .+++|.|||+-.
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p----------~~~~~~H~g~~l~-fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLP----------DTSSGNHNGGGLA-FGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEE----------S-CSSSS-EEEEE-E-TTSEEEEEEB-TTT
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeC----------CCCCCCCCCcccc-CCCCCcEEEEeCCCCC
Confidence 987732 467777622 2 112211110 0001112233454 689999998853
Q ss_pred ---------CCCeEEEEECCCC
Q 013321 157 ---------GNQAIREIQLHDD 169 (445)
Q Consensus 157 ---------gn~rIr~i~l~~~ 169 (445)
..+.|.+|++++.
T Consensus 137 ~~~~~~~~~~~G~ilri~~dG~ 158 (331)
T PF07995_consen 137 DDNAQDPNSLRGKILRIDPDGS 158 (331)
T ss_dssp GGGGCSTTSSTTEEEEEETTSS
T ss_pred cccccccccccceEEEecccCc
Confidence 2478999998774
No 31
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.85 E-value=0.028 Score=57.28 Aligned_cols=135 Identities=21% Similarity=0.288 Sum_probs=77.8
Q ss_pred CCceEEEEcCCCcEEEEeCCC------CeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-
Q 013321 21 MEPFSVAVSPSGELLVLDSEN------SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN- 93 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n------~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~- 93 (445)
..+.||++.++|.+||++.+. ++|++++.+|. +....-.|....-...+......=....+||+.++|.
T Consensus 85 ~D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~----~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~ 160 (326)
T PF13449_consen 85 LDPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGR----VIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRT 160 (326)
T ss_pred CChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCc----ccceEccccccccccCccccccCCCCeEEEEECCCCCE
Confidence 378899998899999999999 99999999843 3222111211100000000000012456999999999
Q ss_pred EEEEeCCC---------------CEEEEEcCC--C--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEE
Q 013321 94 IYIADTMN---------------MAIRKISDT--G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVI 154 (445)
Q Consensus 94 LYVAD~~N---------------~rIrkfd~d--G--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVa 154 (445)
||++=... .||.++|.. | ....+. ..+.+.....-..+.++++ -+++.|+|.
T Consensus 161 l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y--------~ld~~~~~~~~~~isd~~a-l~d~~lLvL 231 (326)
T PF13449_consen 161 LFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAY--------PLDPPPTAPGDNGISDIAA-LPDGRLLVL 231 (326)
T ss_pred EEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEE--------eCCccccccCCCCceeEEE-ECCCcEEEE
Confidence 88764432 467777743 3 111111 0111111113356777775 466779999
Q ss_pred ECC-------CCeEEEEECCC
Q 013321 155 DRG-------NQAIREIQLHD 168 (445)
Q Consensus 155 D~g-------n~rIr~i~l~~ 168 (445)
.+. ..+|+++++..
T Consensus 232 ER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 232 ERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred EccCCCCccceEEEEEEEccc
Confidence 987 45677777654
No 32
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.82 E-value=0.047 Score=55.59 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=95.6
Q ss_pred eEEEEcC---CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEe--
Q 013321 24 FSVAVSP---SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD-- 98 (445)
Q Consensus 24 ~gIAVdp---dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD-- 98 (445)
.|+|+.. ...||.+|..+++|-+++..- ..+ .+.|... |- ...+. ..|.+|... .|+|||+=
T Consensus 141 kGLAi~~~~~~~~LYaadF~~g~IDVFd~~f---~~~-~~~g~F~------DP-~iPag-yAPFnIqni-g~~lyVtYA~ 207 (336)
T TIGR03118 141 KGLAVGPTGGGDYLYAANFRQGRIDVFKGSF---RPP-PLPGSFI------DP-ALPAG-YAPFNVQNL-GGTLYVTYAQ 207 (336)
T ss_pred eeeEEeecCCCceEEEeccCCCceEEecCcc---ccc-cCCCCcc------CC-CCCCC-CCCcceEEE-CCeEEEEEEe
Confidence 4667664 245999999999999998652 112 2223211 00 01111 267888665 57888862
Q ss_pred -----------CCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEEC-----CCCeEEEEECCCCeEE
Q 013321 99 -----------TMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVG-----SSCSLLVIDRGNQAIR 162 (445)
Q Consensus 99 -----------~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd-----~dG~LyVaD~gn~rIr 162 (445)
.+++-|-+||.+|..+.-. +....|+.||+|+..+ -.|.|+|-+.+.++|-
T Consensus 208 qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~-------------as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~In 274 (336)
T TIGR03118 208 QDADRNDEVAGAGLGYVNVFTLNGQLLRRV-------------ASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTIN 274 (336)
T ss_pred cCCcccccccCCCcceEEEEcCCCcEEEEe-------------ccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeE
Confidence 2356788888888332211 1233588899997432 3478999999999999
Q ss_pred EEECCCCc-eee-cCCCCccceEEEEeccceEEEEEEeecCccceeeeccCC
Q 013321 163 EIQLHDDD-CSD-NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDD 212 (445)
Q Consensus 163 ~i~l~~~~-~~~-~~~~g~P~gIav~~~a~~vg~~~~ll~~~~g~~~~s~~~ 212 (445)
.|++.... ... ....+.|.-|-.+.+. ..-..........|+|++.-
T Consensus 275 aFD~~sG~~~g~L~~~~G~pi~i~GLWgL---~fGng~~~~~~ntLyFaAGp 323 (336)
T TIGR03118 275 AYDPQSGAQLGQLLDPDNHPVKVDGLWSL---TFGNGVSGGSANYLYFTAGP 323 (336)
T ss_pred EecCCCCceeeeecCCCCCeEEecCeEEe---eeCCCcCCCCcceEEEEeCC
Confidence 99986432 222 3445566555555432 12223344455678887654
No 33
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=96.79 E-value=0.017 Score=62.98 Aligned_cols=80 Identities=26% Similarity=0.378 Sum_probs=54.0
Q ss_pred CCCCceEEEEcC-CCcEEEEeCCCC-------------------eEEEEeCCCCC------CCccEEEecCCCCcccCCC
Q 013321 19 FGMEPFSVAVSP-SGELLVLDSENS-------------------NIYKISTSLSP------YSRPKLVAGSPEGYYGHVD 72 (445)
Q Consensus 19 ~g~~P~gIAVdp-dG~LYVaDs~n~-------------------rI~kid~dg~~------~G~v~~vaG~~~G~~G~~d 72 (445)
.+..|.+|+++| +|.|||+.+.++ +|+++.+.+.- .-.+.+++|.+........
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 347899999999 789999987666 89999876431 1112334444321111112
Q ss_pred CCccCccCCCcceEEEcCCCCEEEEe
Q 013321 73 GRPRGARMNHPKGLAVDDRGNIYIAD 98 (445)
Q Consensus 73 G~~~~a~Ln~P~GIavD~dG~LYVAD 98 (445)
+......|+.|.+|++|++|+|||+.
T Consensus 428 ~~~~~~~f~sPDNL~~d~~G~LwI~e 453 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDPDGNLWIQE 453 (524)
T ss_pred CcccCCCcCCCCceEECCCCCEEEEe
Confidence 33345679999999999999999864
No 34
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.79 E-value=0.034 Score=56.89 Aligned_cols=136 Identities=23% Similarity=0.271 Sum_probs=74.0
Q ss_pred CCceEEEEcCCCcEEEEeC-------------CCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEE
Q 013321 21 MEPFSVAVSPSGELLVLDS-------------ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLA 87 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs-------------~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIa 87 (445)
-.-.+|+++|||.|||+-. ..+.|+|++.+|+. ....+.-.....+...-..-|++|.+++
T Consensus 114 H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~------p~dnP~~~~~~~~~~i~A~GlRN~~~~~ 187 (331)
T PF07995_consen 114 HNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSI------PADNPFVGDDGADSEIYAYGLRNPFGLA 187 (331)
T ss_dssp S-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-------TTSTTTTSTTSTTTEEEE--SEEEEEE
T ss_pred CCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcC------CCCCccccCCCceEEEEEeCCCccccEE
Confidence 4457799999999999842 23789999887531 1111100000001122233489999999
Q ss_pred EcCC-CCEEEEeCCC---CEEEEEcCCCcEEEecCcccCCCCC-------------CCCC---ccCcc---cCCCceEEE
Q 013321 88 VDDR-GNIYIADTMN---MAIRKISDTGVTTIAGGKWSRGVGH-------------VDGP---SEDAK---FSNDFDVVY 144 (445)
Q Consensus 88 vD~d-G~LYVAD~~N---~rIrkfd~dGv~tiaGg~~G~g~G~-------------~dgp---~~~a~---f~~P~gI~~ 144 (445)
+|+. |+||++|.+. ..|.++...+ ..|..... ...+ ..... -..|.++++
T Consensus 188 ~d~~tg~l~~~d~G~~~~dein~i~~G~-------nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~ 260 (331)
T PF07995_consen 188 FDPNTGRLWAADNGPDGWDEINRIEPGG-------NYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIF 260 (331)
T ss_dssp EETTTTEEEEEEE-SSSSEEEEEE-TT--------B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEE
T ss_pred EECCCCcEEEEccCCCCCcEEEEeccCC-------cCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEE
Confidence 9998 9999999874 3455554322 11110000 0000 00001 146778876
Q ss_pred ECC------CCeEEEEECCCCeEEEEECCCC
Q 013321 145 VGS------SCSLLVIDRGNQAIREIQLHDD 169 (445)
Q Consensus 145 vd~------dG~LyVaD~gn~rIr~i~l~~~ 169 (445)
... .|.++|++.+..+|+++.++..
T Consensus 261 y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~ 291 (331)
T PF07995_consen 261 YRGSAFPEYRGDLFVADYGGGRIWRLDLDED 291 (331)
T ss_dssp E-SSSSGGGTTEEEEEETTTTEEEEEEEETT
T ss_pred ECCccCccccCcEEEecCCCCEEEEEeeecC
Confidence 533 5789999999999999998643
No 35
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.73 E-value=0.015 Score=57.34 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=56.3
Q ss_pred ceEEEEcCC-CcEEEEeCCCCeEEEEe--CCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321 23 PFSVAVSPS-GELLVLDSENSNIYKIS--TSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT 99 (445)
Q Consensus 23 P~gIAVdpd-G~LYVaDs~n~rI~kid--~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~ 99 (445)
|+||+.|.+ -.+|+.|+.|..|..++ ..++.......+..... .+...-..|.|+++|.+|+||||-+
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk---------~~~~e~~~PDGm~ID~eG~L~Va~~ 230 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRK---------SQPFESLEPDGMTIDTEGNLYVATF 230 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEecc---------CCCcCCCCCCcceEccCCcEEEEEe
Confidence 789999975 35899999999995555 44433333333333210 0111234689999999999999999
Q ss_pred CCCEEEEEcC-CC
Q 013321 100 MNMAIRKISD-TG 111 (445)
Q Consensus 100 ~N~rIrkfd~-dG 111 (445)
...+|.++|+ +|
T Consensus 231 ng~~V~~~dp~tG 243 (310)
T KOG4499|consen 231 NGGTVQKVDPTTG 243 (310)
T ss_pred cCcEEEEECCCCC
Confidence 9999999995 45
No 36
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.51 E-value=0.084 Score=54.35 Aligned_cols=126 Identities=15% Similarity=0.212 Sum_probs=78.9
Q ss_pred CCCCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccE---EEecCCCCcccCCCCCccCccCCCcceEEEcCCCC
Q 013321 18 KFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPK---LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN 93 (445)
Q Consensus 18 ~~g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~---~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~ 93 (445)
+.|..|.-|++.|+|. .|+...-|+.|.++.-+.. .|++. ++.-.+.+..| -+.-..|.++++|.
T Consensus 188 ~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g----------~~~~aaIhis~dGr 256 (346)
T COG2706 188 KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTG----------TNWAAAIHISPDGR 256 (346)
T ss_pred CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCC----------CCceeEEEECCCCC
Confidence 4567899999999988 6999888999888876542 24443 33333333333 23445899999999
Q ss_pred -EEEEeCCCCEEEEE--cCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321 94 -IYIADTMNMAIRKI--SDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD 168 (445)
Q Consensus 94 -LYVAD~~N~rIrkf--d~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~ 168 (445)
||++|.+.+.|..| |.++ ..++..... .-..|-+..+.....-|+++.-..+.|.+|..+.
T Consensus 257 FLYasNRg~dsI~~f~V~~~~g~L~~~~~~~t--------------eg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 257 FLYASNRGHDSIAVFSVDPDGGKLELVGITPT--------------EGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred EEEEecCCCCeEEEEEEcCCCCEEEEEEEecc--------------CCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 99999998777655 4554 333322111 1124666654334445666666555566666544
No 37
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.50 E-value=0.035 Score=54.94 Aligned_cols=122 Identities=11% Similarity=0.161 Sum_probs=64.2
Q ss_pred CceEEEEcC-CCcEEEEeCCC-CeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321 22 EPFSVAVSP-SGELLVLDSEN-SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD 98 (445)
Q Consensus 22 ~P~gIAVdp-dG~LYVaDs~n-~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD 98 (445)
.-.|||.|+ ++.|||+--.+ .+|+.+..... .......... .... ....+..|.+|++++ .|+|||..
T Consensus 119 G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~-~~~~~~~~~~--~~~~------~~~~~~d~S~l~~~p~t~~lliLS 189 (248)
T PF06977_consen 119 GFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG-GFDLFVSDDQ--DLDD------DKLFVRDLSGLSYDPRTGHLLILS 189 (248)
T ss_dssp --EEEEEETTTTEEEEEEESSSEEEEEEESTT--SS--EEEE-H--HHH-------HT--SS---EEEEETTTTEEEEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCChhhEEEccccC-ccceeecccc--cccc------ccceeccccceEEcCCCCeEEEEE
Confidence 468999999 46688775433 35666654210 0111111110 0000 122466799999998 67799999
Q ss_pred CCCCEEEEEcCCCc--EE--EecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEE
Q 013321 99 TMNMAIRKISDTGV--TT--IAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 164 (445)
Q Consensus 99 ~~N~rIrkfd~dGv--~t--iaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i 164 (445)
..+++|..+|.+|. .. +..+..| -...+..|-||+ .|++|+|||+.-.| +.++|
T Consensus 190 ~es~~l~~~d~~G~~~~~~~L~~g~~g----------l~~~~~QpEGIa-~d~~G~LYIvsEpN-lfy~f 247 (248)
T PF06977_consen 190 DESRLLLELDRQGRVVSSLSLDRGFHG----------LSKDIPQPEGIA-FDPDGNLYIVSEPN-LFYRF 247 (248)
T ss_dssp TTTTEEEEE-TT--EEEEEE-STTGGG-----------SS---SEEEEE-E-TT--EEEEETTT-EEEEE
T ss_pred CCCCeEEEECCCCCEEEEEEeCCcccC----------cccccCCccEEE-ECCCCCEEEEcCCc-eEEEe
Confidence 99999999999993 22 2122111 123577899997 68999999998754 66665
No 38
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.47 E-value=0.22 Score=47.38 Aligned_cols=103 Identities=13% Similarity=0.172 Sum_probs=64.0
Q ss_pred CcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeCCCCEEEEEcCC
Q 013321 32 GELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDT 110 (445)
Q Consensus 32 G~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~N~rIrkfd~d 110 (445)
+.+|++...++.|.+++..+ +........ -..|.+++++++|. ||++....+.|+.+|..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t---~~~~~~~~~----------------~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~ 61 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTAT---LEVTRTFPV----------------GQRPRGITLSKDGKLLYVCASDSDTIQVIDLA 61 (300)
T ss_pred CcEEEEecCCCEEEEEECCC---CceEEEEEC----------------CCCCCceEECCCCCEEEEEECCCCeEEEEECC
Confidence 46888888888999888753 332222111 11367899999987 77888888899999965
Q ss_pred C-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCc
Q 013321 111 G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDD 170 (445)
Q Consensus 111 G-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~~~ 170 (445)
. ..+.... .+ ..+..++ .++++ .||++....+.|+.+++....
T Consensus 62 ~~~~~~~~~-----~~-----------~~~~~~~-~~~~g~~l~~~~~~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 62 TGEVIGTLP-----SG-----------PDPELFA-LHPNGKILYIANEDDNLVTVIDIETRK 106 (300)
T ss_pred CCcEEEecc-----CC-----------CCccEEE-ECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence 4 2211000 00 0133344 45555 467776667789988886543
No 39
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=96.35 E-value=0.18 Score=52.50 Aligned_cols=135 Identities=19% Similarity=0.212 Sum_probs=72.6
Q ss_pred ceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeC
Q 013321 23 PFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT 99 (445)
Q Consensus 23 P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~-~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~ 99 (445)
+.++++++||. +||+.. ++.|.++|+.. +++. .+.-. ..|.||++.+||. |||++.
T Consensus 39 h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~---~~~v~~i~~G-----------------~~~~~i~~s~DG~~~~v~n~ 97 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANR-DGTVSVIDLAT---GKVVATIKVG-----------------GNPRGIAVSPDGKYVYVANY 97 (369)
T ss_dssp EEEEE-TT-SSEEEEEET-TSEEEEEETTS---SSEEEEEE-S-----------------SEEEEEEE--TTTEEEEEEE
T ss_pred eeEEEecCCCCEEEEEcC-CCeEEEEECCc---ccEEEEEecC-----------------CCcceEEEcCCCCEEEEEec
Confidence 45678889887 899874 67999999873 3322 22111 2688999999998 899999
Q ss_pred CCCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc---eee
Q 013321 100 MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD---CSD 173 (445)
Q Consensus 100 ~N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~---~~~ 173 (445)
..+.|..+|... +.++..+.... ++ .-....+|+........+|+-...++|+.++..... ...
T Consensus 98 ~~~~v~v~D~~tle~v~~I~~~~~~~-----~~-----~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~ 167 (369)
T PF02239_consen 98 EPGTVSVIDAETLEPVKTIPTGGMPV-----DG-----PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT 167 (369)
T ss_dssp ETTEEEEEETTT--EEEEEE--EE-T-----TT-----S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE
T ss_pred CCCceeEeccccccceeecccccccc-----cc-----cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee
Confidence 999999999655 44443322110 00 112233444333333344455666777777744321 112
Q ss_pred cCCCCccceEEEEec
Q 013321 174 NYDDTFHLGIFVLVA 188 (445)
Q Consensus 174 ~~~~g~P~gIav~~~ 188 (445)
.....+|.+..+...
T Consensus 168 i~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 168 IKVGRFPHDGGFDPD 182 (369)
T ss_dssp EE--TTEEEEEE-TT
T ss_pred ecccccccccccCcc
Confidence 222335555555443
No 40
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.14 E-value=0.47 Score=49.03 Aligned_cols=166 Identities=14% Similarity=0.204 Sum_probs=105.7
Q ss_pred CceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeC
Q 013321 22 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT 99 (445)
Q Consensus 22 ~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~ 99 (445)
+++..-++|+|+ |+++|-+..||..++.+. |.+.-..-.. -.+| ..|.-|+|.|+|. .|+.--
T Consensus 146 h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d---g~L~~~~~~~-v~~G-----------~GPRHi~FHpn~k~aY~v~E 210 (346)
T COG2706 146 HVHSANFTPDGRYLVVPDLGTDRIFLYDLDD---GKLTPADPAE-VKPG-----------AGPRHIVFHPNGKYAYLVNE 210 (346)
T ss_pred ccceeeeCCCCCEEEEeecCCceEEEEEccc---Cccccccccc-cCCC-----------CCcceEEEcCCCcEEEEEec
Confidence 478899999985 899999999999998762 3332211100 0111 3699999999998 888888
Q ss_pred CCCEEEEEcCC---C-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCc--ee
Q 013321 100 MNMAIRKISDT---G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDD--CS 172 (445)
Q Consensus 100 ~N~rIrkfd~d---G-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~~~--~~ 172 (445)
.|+.|.++.-+ | ...+.--. ..|..-...++...|. +.++| -||++|++-+.|..|..+... ..
T Consensus 211 L~stV~v~~y~~~~g~~~~lQ~i~--------tlP~dF~g~~~~aaIh-is~dGrFLYasNRg~dsI~~f~V~~~~g~L~ 281 (346)
T COG2706 211 LNSTVDVLEYNPAVGKFEELQTID--------TLPEDFTGTNWAAAIH-ISPDGRFLYASNRGHDSIAVFSVDPDGGKLE 281 (346)
T ss_pred cCCEEEEEEEcCCCceEEEeeeec--------cCccccCCCCceeEEE-ECCCCCEEEEecCCCCeEEEEEEcCCCCEEE
Confidence 89998877632 3 22221100 0111111223445555 56666 789999999999998876542 22
Q ss_pred e----cCCCCccceEEEEeccceEEEEEEeecCccceeeeccCCCc
Q 013321 173 D----NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPR 214 (445)
Q Consensus 173 ~----~~~~g~P~gIav~~~a~~vg~~~~ll~~~~g~~~~s~~~~~ 214 (445)
. ....-+|-+..+..++.+ +.+.-|....-.+|..++..
T Consensus 282 ~~~~~~teg~~PR~F~i~~~g~~---Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 282 LVGITPTEGQFPRDFNINPSGRF---LIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEEEeccCCcCCccceeCCCCCE---EEEEccCCCcEEEEEEcCCC
Confidence 1 233335888888776544 44666777777788877644
No 41
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.96 E-value=0.24 Score=49.10 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=55.2
Q ss_pred cCCCcceEEEcCCCC-EEEEeCCCCEEEEEc---CCCc---EEEecC-cccCCCCCCCCCccCcccCCCceEEEECCCCe
Q 013321 79 RMNHPKGLAVDDRGN-IYIADTMNMAIRKIS---DTGV---TTIAGG-KWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS 150 (445)
Q Consensus 79 ~Ln~P~GIavD~dG~-LYVAD~~N~rIrkfd---~dGv---~tiaGg-~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~ 150 (445)
.+--|+||+.|.+-. +|+.|+.|..|..+| ..|. ....+. ...+ .. .-..|-+++ +|.+|.
T Consensus 156 ~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~--------~~--e~~~PDGm~-ID~eG~ 224 (310)
T KOG4499|consen 156 CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ--------PF--ESLEPDGMT-IDTEGN 224 (310)
T ss_pred hccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC--------Cc--CCCCCCcce-EccCCc
Confidence 355788999997655 999999999996666 3441 111110 0000 00 012466775 799999
Q ss_pred EEEEECCCCeEEEEECCCCce
Q 013321 151 LLVIDRGNQAIREIQLHDDDC 171 (445)
Q Consensus 151 LyVaD~gn~rIr~i~l~~~~~ 171 (445)
|||+-..+++|.++++.....
T Consensus 225 L~Va~~ng~~V~~~dp~tGK~ 245 (310)
T KOG4499|consen 225 LYVATFNGGTVQKVDPTTGKI 245 (310)
T ss_pred EEEEEecCcEEEEECCCCCcE
Confidence 999999999999999876443
No 42
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.88 E-value=1.6 Score=44.55 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=28.4
Q ss_pred CcceEEEcCCCCEEEEeCCC------CEEEEEcCCC
Q 013321 82 HPKGLAVDDRGNIYIADTMN------MAIRKISDTG 111 (445)
Q Consensus 82 ~P~GIavD~dG~LYVAD~~N------~rIrkfd~dG 111 (445)
-+.||++.++|.+||++-+. ++|++++.+|
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G 121 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDG 121 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCC
Confidence 68899998899999999999 9999999988
No 43
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=95.80 E-value=0.071 Score=44.58 Aligned_cols=31 Identities=16% Similarity=0.420 Sum_probs=27.4
Q ss_pred cCCCcceEEEcCCCC-EEEEeCCCCEEEEEcC
Q 013321 79 RMNHPKGLAVDDRGN-IYIADTMNMAIRKISD 109 (445)
Q Consensus 79 ~Ln~P~GIavD~dG~-LYVAD~~N~rIrkfd~ 109 (445)
.|..|+||+++++++ ||||+...+.|+++..
T Consensus 52 g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 52 GFSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred cCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 388999999999776 9999999999998763
No 44
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=95.73 E-value=0.42 Score=49.76 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=73.0
Q ss_pred CcEEEEeCC----CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeC-------
Q 013321 32 GELLVLDSE----NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT------- 99 (445)
Q Consensus 32 G~LYVaDs~----n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~------- 99 (445)
.++||.|.. .++|.+||.+. +++...+-. =..|.++ +.+||. ||||.+
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~---~~v~g~i~~----------------G~~P~~~-~spDg~~lyva~~~~~R~~~ 72 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEA---GRVLGMTDG----------------GFLPNPV-VASDGSFFAHASTVYSRIAR 72 (352)
T ss_pred CEEEEECCcccccCceEEEEECCC---CEEEEEEEc----------------cCCCcee-ECCCCCEEEEEecccccccc
Confidence 369999987 38999999763 333221111 1268887 999887 999999
Q ss_pred --CCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECC-CCeEEEEECCCCceee
Q 013321 100 --MNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRG-NQAIREIQLHDDDCSD 173 (445)
Q Consensus 100 --~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~g-n~rIr~i~l~~~~~~~ 173 (445)
..+.|.+||......+.--..+. .| .-.....|..++ +.++| .|||++.. .+.|-+|++.......
T Consensus 73 G~~~d~V~v~D~~t~~~~~~i~~p~------~p-~~~~~~~~~~~~-ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 73 GKRTDYVEVIDPQTHLPIADIELPE------GP-RFLVGTYPWMTS-LTPDNKTLLFYQFSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CCCCCEEEEEECccCcEEeEEccCC------Cc-hhhccCccceEE-ECCCCCEEEEecCCCCCEEEEEECCCCcEEE
Confidence 88999999966533221111100 00 011234566666 56666 68999966 8999999988765544
No 45
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=95.64 E-value=0.24 Score=53.20 Aligned_cols=118 Identities=16% Similarity=0.243 Sum_probs=67.7
Q ss_pred CCceEEEEcCC-------CcEEEEeC---------CCCeEEEEeCCC--CCCC-ccEEEecCCCCcccCCCCCccCccCC
Q 013321 21 MEPFSVAVSPS-------GELLVLDS---------ENSNIYKISTSL--SPYS-RPKLVAGSPEGYYGHVDGRPRGARMN 81 (445)
Q Consensus 21 ~~P~gIAVdpd-------G~LYVaDs---------~n~rI~kid~dg--~~~G-~v~~vaG~~~G~~G~~dG~~~~a~Ln 81 (445)
..+.|||++|+ +.|||+-+ ...+|.|+..+. .... ...++.+.+.+ ..+
T Consensus 79 ~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~-~~H----------- 146 (454)
T TIGR03606 79 NGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAG-NDH----------- 146 (454)
T ss_pred CceeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCC-CCc-----------
Confidence 45799999875 35899842 246898887642 1112 22333343321 112
Q ss_pred CcceEEEcCCCCEEEEeCC--------------------------------CCEEEEEcCCCcEEEecCcccCCCCCCCC
Q 013321 82 HPKGLAVDDRGNIYIADTM--------------------------------NMAIRKISDTGVTTIAGGKWSRGVGHVDG 129 (445)
Q Consensus 82 ~P~GIavD~dG~LYVAD~~--------------------------------N~rIrkfd~dGv~tiaGg~~G~g~G~~dg 129 (445)
.=..|++++||.|||+=.. .+.|.||+.+|.. -+.+. ..++
T Consensus 147 ~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsi-P~dNP------f~~g 219 (454)
T TIGR03606 147 NGGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSI-PKDNP------SING 219 (454)
T ss_pred CCceEEECCCCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCC-CCCCC------ccCC
Confidence 2337889999999984322 2257777777610 00000 0011
Q ss_pred C-cc--CcccCCCceEEEECCCCeEEEEECCC
Q 013321 130 P-SE--DAKFSNDFDVVYVGSSCSLLVIDRGN 158 (445)
Q Consensus 130 p-~~--~a~f~~P~gI~~vd~dG~LyVaD~gn 158 (445)
. .+ ..-+.+|+++++ +++|.||++|-+-
T Consensus 220 ~~~eIyA~G~RNp~Gla~-dp~G~Lw~~e~Gp 250 (454)
T TIGR03606 220 VVSHIFTYGHRNPQGLAF-TPDGTLYASEQGP 250 (454)
T ss_pred CcceEEEEeccccceeEE-CCCCCEEEEecCC
Confidence 0 01 124689999974 7799999999765
No 46
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=95.57 E-value=0.53 Score=49.00 Aligned_cols=65 Identities=12% Similarity=0.179 Sum_probs=44.5
Q ss_pred EEEcCCCC-EEEEe-CC--------CCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC--e
Q 013321 86 LAVDDRGN-IYIAD-TM--------NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC--S 150 (445)
Q Consensus 86 IavD~dG~-LYVAD-~~--------N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG--~ 150 (445)
|+++++|. |||+- .. .+.|.+||... +..+.-| ..|++|+ +++++ .
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG------------------~~~~~ia-vS~Dgkp~ 313 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG------------------HEIDSIN-VSQDAKPL 313 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC------------------CceeeEE-ECCCCCeE
Confidence 99998766 99953 22 26899999655 2333211 1567776 45555 5
Q ss_pred EEEEECCCCeEEEEECCCC
Q 013321 151 LLVIDRGNQAIREIQLHDD 169 (445)
Q Consensus 151 LyVaD~gn~rIr~i~l~~~ 169 (445)
||+++..++.|..|+....
T Consensus 314 lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 314 LYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEEeCCCCCcEEEEECcCC
Confidence 7888888899999997664
No 47
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=95.57 E-value=0.043 Score=55.27 Aligned_cols=64 Identities=22% Similarity=0.387 Sum_probs=48.5
Q ss_pred CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCC-CccEEEecCCCCcccCCCCCccCccCCCcceEEEcC--CCCEEEEe
Q 013321 22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPY-SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD--RGNIYIAD 98 (445)
Q Consensus 22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~-G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~--dG~LYVAD 98 (445)
+-.|+++|++|+||+++..++.|.++++++.+. ....+++-.+ ..|.+|.+++++. +|.|||.-
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~-------------~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDP-------------RTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-C-------------C-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcC-------------ceeeccceeeeccccCceEEEEE
Confidence 457999999999999999999999999985332 1455565443 1389999999999 99999975
No 48
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=95.37 E-value=0.064 Score=58.42 Aligned_cols=81 Identities=23% Similarity=0.291 Sum_probs=53.3
Q ss_pred CCceEEEEcC-CCcEEEEeCCCC----------------eEEEEeCCCC------CCCccEEEecCCCCcccCCCCCccC
Q 013321 21 MEPFSVAVSP-SGELLVLDSENS----------------NIYKISTSLS------PYSRPKLVAGSPEGYYGHVDGRPRG 77 (445)
Q Consensus 21 ~~P~gIAVdp-dG~LYVaDs~n~----------------rI~kid~dg~------~~G~v~~vaG~~~G~~G~~dG~~~~ 77 (445)
..|.+|++.| .|++|++.+.|+ +|+|+-+... ....+-+.+|.+.-..+........
T Consensus 417 dRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~~ 496 (616)
T COG3211 417 DRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANINA 496 (616)
T ss_pred cCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCccc
Confidence 6799999999 688999998765 5777765431 1122344455543222211222333
Q ss_pred ccCCCcceEEEcCCCCEEEEeCCC
Q 013321 78 ARMNHPKGLAVDDRGNIYIADTMN 101 (445)
Q Consensus 78 a~Ln~P~GIavD~dG~LYVAD~~N 101 (445)
.-|+.|.+|+||+.|+|||+-=++
T Consensus 497 ~~f~~PDnl~fD~~GrLWi~TDg~ 520 (616)
T COG3211 497 NWFNSPDNLAFDPWGRLWIQTDGS 520 (616)
T ss_pred ccccCCCceEECCCCCEEEEecCC
Confidence 569999999999999999975443
No 49
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=95.23 E-value=0.31 Score=51.52 Aligned_cols=134 Identities=21% Similarity=0.301 Sum_probs=78.8
Q ss_pred CCceEEEEcC-CCcEEEEeCCCCeE------EEEeCCCCCCCccEEEecCC-CCcccCCCCCcc---------CccCCCc
Q 013321 21 MEPFSVAVSP-SGELLVLDSENSNI------YKISTSLSPYSRPKLVAGSP-EGYYGHVDGRPR---------GARMNHP 83 (445)
Q Consensus 21 ~~P~gIAVdp-dG~LYVaDs~n~rI------~kid~dg~~~G~v~~vaG~~-~G~~G~~dG~~~---------~a~Ln~P 83 (445)
.+|.|++++| +|.||++|.+...+ -.+ ..|..+|=+....|.. .+... .++... -+.-..|
T Consensus 239 RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i-~~G~nYGWP~~~~G~~~~g~~~-~~~~~~~~~~~p~~~~~~h~Ap 316 (399)
T COG2133 239 RNPQGLAWHPVTGALWTTEHGPDALRGPDELNSI-RPGKNYGWPYAYFGQNYDGRAI-PDGTVVAGAIQPVYTWAPHIAP 316 (399)
T ss_pred CCccceeecCCCCcEEEEecCCCcccCccccccc-ccCCccCCceeccCcccCcccc-CCCcccccccCCceeecccccc
Confidence 6799999999 59999999766333 111 2222233333332211 01100 011110 0111356
Q ss_pred ceEEEcCC-------CCEEEEeCCCCEEEEEcCCCc-EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEE
Q 013321 84 KGLAVDDR-------GNIYIADTMNMAIRKISDTGV-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVID 155 (445)
Q Consensus 84 ~GIavD~d-------G~LYVAD~~N~rIrkfd~dGv-~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD 155 (445)
.||+|-.. |.+||+-.+.-.+.+.+.+|. ..+..+ .+.+ + .-..|.||+ +.+||.|||+|
T Consensus 317 sGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~-------fl~~---d-~~gR~~dV~-v~~DGallv~~ 384 (399)
T COG2133 317 SGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTG-------FLSG---D-LGGRPRDVA-VAPDGALLVLT 384 (399)
T ss_pred ceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEE-------EEec---C-CCCcccceE-ECCCCeEEEee
Confidence 89999842 689999998877888888773 222111 1110 0 004678886 79999999998
Q ss_pred CC-CCeEEEEECCC
Q 013321 156 RG-NQAIREIQLHD 168 (445)
Q Consensus 156 ~g-n~rIr~i~l~~ 168 (445)
-. +++|++++..+
T Consensus 385 D~~~g~i~Rv~~~~ 398 (399)
T COG2133 385 DQGDGRILRVSYAG 398 (399)
T ss_pred cCCCCeEEEecCCC
Confidence 86 77999998643
No 50
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.20 E-value=1.2 Score=45.65 Aligned_cols=162 Identities=12% Similarity=0.055 Sum_probs=81.7
Q ss_pred CCceEEEEcCCCcEEEEeCCCCeEEEEeCC-----CCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEE
Q 013321 21 MEPFSVAVSPSGELLVLDSENSNIYKISTS-----LSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIY 95 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~d-----g~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LY 95 (445)
.+|.||++.|.|-+||+|.+++....++.+ +.. +. +++-.+ ...+ ...-..|+||++......-
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~--~~-L~vtiP-~~~~-------~~~~~~PTGiVfN~~~~F~ 91 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQ--DP-LVVVIP-APPP-------LAAEGTPTGQVFNGSDTFV 91 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCc--cc-eEEEec-CCCC-------CCCCCCccEEEEeCCCceE
Confidence 789999999999999999999999888876 221 11 111111 0001 0112358899888644433
Q ss_pred EEeCCCC--EEEEEc-CCC-cEEEecCcccC----CCCCCCCCccCcccCCCceEEEE--CCCCeEEEEECCCCeEEEEE
Q 013321 96 IADTMNM--AIRKIS-DTG-VTTIAGGKWSR----GVGHVDGPSEDAKFSNDFDVVYV--GSSCSLLVIDRGNQAIREIQ 165 (445)
Q Consensus 96 VAD~~N~--rIrkfd-~dG-v~tiaGg~~G~----g~G~~dgp~~~a~f~~P~gI~~v--d~dG~LyVaD~gn~rIr~i~ 165 (445)
|.-.... ....|. .+| +.-+.....-. ..--.|.....+ .. .++++. ...+.||.+|..+++|.+|+
T Consensus 92 vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~ga-vY--kGLAi~~~~~~~~LYaadF~~g~IDVFd 168 (336)
T TIGR03118 92 VSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGN-VY--KGLAVGPTGGGDYLYAANFRQGRIDVFK 168 (336)
T ss_pred EcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcc-ee--eeeEEeecCCCceEEEeccCCCceEEec
Confidence 3332211 111222 233 22221100000 000000000000 00 233322 22468999999999999998
Q ss_pred CCCCceee--------cCCCCccceEEEEeccceEEEEE
Q 013321 166 LHDDDCSD--------NYDDTFHLGIFVLVAAAFFGYML 196 (445)
Q Consensus 166 l~~~~~~~--------~~~~g~P~gIav~~~a~~vg~~~ 196 (445)
........ ....-.|-+|..+.+..++-|+.
T Consensus 169 ~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~ 207 (336)
T TIGR03118 169 GSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQ 207 (336)
T ss_pred CccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEe
Confidence 65432211 11122567787777777776655
No 51
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=95.04 E-value=0.049 Score=37.70 Aligned_cols=33 Identities=36% Similarity=0.442 Sum_probs=29.0
Q ss_pred cCCCcceEEEcCC-CCEEEEeCCCCEEEEEcCCC
Q 013321 79 RMNHPKGLAVDDR-GNIYIADTMNMAIRKISDTG 111 (445)
Q Consensus 79 ~Ln~P~GIavD~d-G~LYVAD~~N~rIrkfd~dG 111 (445)
.+..|.|||+|+. +.||.+|....+|.+.+-+|
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 4789999999985 45999999999999999776
No 52
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=95.01 E-value=0.082 Score=38.01 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=31.8
Q ss_pred CcEEEEeCCCC-eEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC
Q 013321 32 GELLVLDSENS-NIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD 90 (445)
Q Consensus 32 G~LYVaDs~n~-rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~ 90 (445)
|.||.+|...+ .|.+.+.+|+ ...+++.. .+.+|.|||||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs---~~~~vi~~---------------~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGS---NRRTVISD---------------DLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTST---SEEEEEES---------------STSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCC---CeEEEEEC---------------CCCCcCEEEECC
Confidence 57999999999 9999999963 23444332 288999999984
No 53
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.85 E-value=0.094 Score=53.15 Aligned_cols=77 Identities=23% Similarity=0.418 Sum_probs=53.4
Q ss_pred CceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321 22 EPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 100 (445)
Q Consensus 22 ~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~ 100 (445)
.-.|+.+++ +|.|+|...+.++++.++..|...+.+.+..|.. |. ...+..|.|||+|++|+|||+---
T Consensus 234 DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~-gL---------~~dipqaEGiamDd~g~lYIvSEP 303 (316)
T COG3204 234 DVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNH-GL---------SSDIPQAEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred ccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCC-CC---------cccCCCcceeEECCCCCEEEEecC
Confidence 346788887 6789999889999999999865544444443331 22 123668899999999999987654
Q ss_pred CCEEEEEcC
Q 013321 101 NMAIRKISD 109 (445)
Q Consensus 101 N~rIrkfd~ 109 (445)
| .-.+|.+
T Consensus 304 n-lfy~F~~ 311 (316)
T COG3204 304 N-LFYRFTP 311 (316)
T ss_pred C-cceeccc
Confidence 3 3344443
No 54
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=94.19 E-value=0.47 Score=54.67 Aligned_cols=134 Identities=18% Similarity=0.161 Sum_probs=98.4
Q ss_pred CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEe
Q 013321 21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD 98 (445)
Q Consensus 21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD 98 (445)
..|.++++|- .+++|.+|..+..|.+.+.++.. -.+++.. .+..|..+++++ .|.+|.+|
T Consensus 480 ~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~---~~vl~~~---------------~l~~~r~~~v~p~~g~~~wtd 541 (877)
T KOG1215|consen 480 CIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSS---RKVLVSK---------------DLDLPRSIAVDPEKGLMFWTD 541 (877)
T ss_pred cccCcEEEEeccCCceecccCCceeEEEEccCCc---eeEEEec---------------CCCCccceeeccccCeeEEec
Confidence 5689999998 77899999999999999877532 2233322 246899999998 77899999
Q ss_pred CC-CCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCC-eEEEEECCCCcee--
Q 013321 99 TM-NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ-AIREIQLHDDDCS-- 172 (445)
Q Consensus 99 ~~-N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~-rIr~i~l~~~~~~-- 172 (445)
++ ..+|.+-..+| ..++.. ..+.+|.++++.-.+..+|-+|.-.. .|..+..++..-.
T Consensus 542 ~~~~~~i~ra~~dg~~~~~l~~----------------~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~~ 605 (877)
T KOG1215|consen 542 WGQPPRIERASLDGSERAVLVT----------------NGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRRVV 605 (877)
T ss_pred CCCCchhhhhcCCCCCceEEEe----------------CCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceEEe
Confidence 98 55888888888 233211 11568889988778889999999887 7888888875542
Q ss_pred ecCCCCccceEEEEec
Q 013321 173 DNYDDTFHLGIFVLVA 188 (445)
Q Consensus 173 ~~~~~g~P~gIav~~~ 188 (445)
.......|.++++...
T Consensus 606 ~~~~~~~p~~~~~~~~ 621 (877)
T KOG1215|consen 606 DSEDLPHPFGLSVFED 621 (877)
T ss_pred ccccCCCceEEEEecc
Confidence 2344556777776654
No 55
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=93.62 E-value=0.15 Score=35.18 Aligned_cols=31 Identities=23% Similarity=0.030 Sum_probs=27.6
Q ss_pred CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCC
Q 013321 21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSL 51 (445)
Q Consensus 21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg 51 (445)
..|.+||+|+ .+.||.+|...+.|.+.+.+|
T Consensus 9 ~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 9 GHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 5799999999 567999999999999999875
No 56
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=93.00 E-value=0.97 Score=49.48 Aligned_cols=80 Identities=21% Similarity=0.408 Sum_probs=52.2
Q ss_pred ccCCCcceEEEcC-CCCEEEEeCCCC-------------------EEEEEcCCCc----------EEEecCcccCCCCCC
Q 013321 78 ARMNHPKGLAVDD-RGNIYIADTMNM-------------------AIRKISDTGV----------TTIAGGKWSRGVGHV 127 (445)
Q Consensus 78 a~Ln~P~GIavD~-dG~LYVAD~~N~-------------------rIrkfd~dGv----------~tiaGg~~G~g~G~~ 127 (445)
..|+.|.+|++++ +|.||||-+.+. +|.+++..+- ..+.++.........
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 4799999999998 688999988766 7888885431 111122110000111
Q ss_pred CCCccCcccCCCceEEEECCCCeEEEEECCC
Q 013321 128 DGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN 158 (445)
Q Consensus 128 dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn 158 (445)
........|..|-.|+ ++++|.|||+.-++
T Consensus 427 ~~~~~~~~f~sPDNL~-~d~~G~LwI~eD~~ 456 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLA-FDPDGNLWIQEDGG 456 (524)
T ss_pred cCcccCCCcCCCCceE-ECCCCCEEEEeCCC
Confidence 2234456789999997 68899999886543
No 57
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=92.56 E-value=3.7 Score=41.69 Aligned_cols=134 Identities=18% Similarity=0.150 Sum_probs=83.4
Q ss_pred CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEc----CCCCEEE
Q 013321 21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD----DRGNIYI 96 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD----~dG~LYV 96 (445)
.+.++|..+++|+++|+-...+.|++|+.. .|++....|.+.+. +-......|..-++..+- .++.|-|
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~---tG~I~W~lgG~~~~----df~~~~~~f~~QHdar~~~~~~~~~~Isl 216 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRNTSTIYKIDPS---TGKIIWRLGGKRNS----DFTLPATNFSWQHDARFLNESNDDGTISL 216 (299)
T ss_pred cEeeeeeecCCccEEEEecccCEEEEEECC---CCcEEEEeCCCCCC----cccccCCcEeeccCCEEeccCCCCCEEEE
Confidence 566788888999999999888999999976 37777777654211 111133456666666665 6777777
Q ss_pred EeC----------CCCEEEEEcCCCc-EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEE
Q 013321 97 ADT----------MNMAIRKISDTGV-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQ 165 (445)
Q Consensus 97 AD~----------~N~rIrkfd~dGv-~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~ 165 (445)
-|- ...+|..+|.... .++.-..... .+. .++.-.+-+-.-++|+++|....+.++..++
T Consensus 217 FDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~----~~~-----~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~ 287 (299)
T PF14269_consen 217 FDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDH----PDG-----FYSPSQGSAQRLPNGNVLIGWGNNGRISEFT 287 (299)
T ss_pred EcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecC----CCc-----ccccCCCcceECCCCCEEEecCCCceEEEEC
Confidence 776 3567888886652 2221111000 000 0000011122347799999999999999999
Q ss_pred CCCCc
Q 013321 166 LHDDD 170 (445)
Q Consensus 166 l~~~~ 170 (445)
.++..
T Consensus 288 ~~G~v 292 (299)
T PF14269_consen 288 PDGEV 292 (299)
T ss_pred CCCCE
Confidence 88754
No 58
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.48 E-value=0.2 Score=50.41 Aligned_cols=59 Identities=22% Similarity=0.347 Sum_probs=44.6
Q ss_pred CcceEEEcCCCCEEEEeCCCCEEEEEcCCC------cEEEecCcccCCCCCCCCCccCcccCCCceEEEECC--CCeEEE
Q 013321 82 HPKGLAVDDRGNIYIADTMNMAIRKISDTG------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS--SCSLLV 153 (445)
Q Consensus 82 ~P~GIavD~dG~LYVAD~~N~rIrkfd~dG------v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~--dG~LyV 153 (445)
.-.|+++|++|+||++|..++.|.+.++++ ..+++- ..-.+.+|.++. ++. +|.|||
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~--------------d~~~l~~pd~~~-i~~~~~g~L~v 251 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ--------------DPRTLQWPDGLK-IDPEGDGYLWV 251 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE---------------CC-GSSEEEEE-E-T--TS-EEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEE--------------cCceeeccceee-eccccCceEEE
Confidence 346999999999999999999999999887 223321 122488999997 677 899999
Q ss_pred EE
Q 013321 154 ID 155 (445)
Q Consensus 154 aD 155 (445)
.-
T Consensus 252 ~s 253 (287)
T PF03022_consen 252 LS 253 (287)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 59
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=92.26 E-value=1.1 Score=46.62 Aligned_cols=98 Identities=16% Similarity=0.195 Sum_probs=61.2
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeCCCCEEEEEcCCC-
Q 013321 34 LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDTG- 111 (445)
Q Consensus 34 LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~N~rIrkfd~dG- 111 (445)
+||++.+++.|..+|... .++....... -+-+.++++.+||. +||+.. .+.|.+||..-
T Consensus 8 ~~V~~~~~~~v~viD~~t---~~~~~~i~~~---------------~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~ 68 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGAT---NKVVARIPTG---------------GAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATG 68 (369)
T ss_dssp EEEEEGGGTEEEEEETTT----SEEEEEE-S---------------TTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSS
T ss_pred EEEEecCCCEEEEEECCC---CeEEEEEcCC---------------CCceeEEEecCCCCEEEEEcC-CCeEEEEECCcc
Confidence 457888888899888763 2222222110 01245788899998 999986 57999999644
Q ss_pred --cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCC
Q 013321 112 --VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDD 169 (445)
Q Consensus 112 --v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~~ 169 (445)
+.++..|. .|.+++ ++++| .|||++...+.|..++....
T Consensus 69 ~~v~~i~~G~------------------~~~~i~-~s~DG~~~~v~n~~~~~v~v~D~~tl 110 (369)
T PF02239_consen 69 KVVATIKVGG------------------NPRGIA-VSPDGKYVYVANYEPGTVSVIDAETL 110 (369)
T ss_dssp SEEEEEE-SS------------------EEEEEE-E--TTTEEEEEEEETTEEEEEETTT-
T ss_pred cEEEEEecCC------------------CcceEE-EcCCCCEEEEEecCCCceeEeccccc
Confidence 34443322 356666 45565 68889988999999997663
No 60
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=92.21 E-value=3.2 Score=42.79 Aligned_cols=142 Identities=16% Similarity=0.180 Sum_probs=78.3
Q ss_pred CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321 21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 100 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~ 100 (445)
..-+.|++ .++++|++++.-+++..+++.-+.. -.. .|...+. +....=.|-+|+|+....--||+=.+
T Consensus 103 idiHdia~-~~~~l~fVNT~fSCLatl~~~~SF~----P~W-kPpFIs~-----la~eDRCHLNGlA~~~g~p~yVTa~~ 171 (335)
T TIGR03032 103 IDAHDLAL-GAGRLLFVNTLFSCLATVSPDYSFV----PLW-KPPFISK-----LAPEDRCHLNGMALDDGEPRYVTALS 171 (335)
T ss_pred cchhheee-cCCcEEEEECcceeEEEECCCCccc----ccc-CCccccc-----cCccCceeecceeeeCCeEEEEEEee
Confidence 34678999 6779999999989999998863321 110 0111111 01111134569999753337765432
Q ss_pred CC---EEEEEc-CC-C-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECC-CCceee
Q 013321 101 NM---AIRKIS-DT-G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH-DDDCSD 173 (445)
Q Consensus 101 N~---rIrkfd-~d-G-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~-~~~~~~ 173 (445)
.. .=.|=+ .+ | +.-+..+. .....|..|++--. -+|+|||+|.+.+.|..++++ |.....
T Consensus 172 ~sD~~~gWR~~~~~gG~vidv~s~e-----------vl~~GLsmPhSPRW--hdgrLwvldsgtGev~~vD~~~G~~e~V 238 (335)
T TIGR03032 172 QSDVADGWREGRRDGGCVIDIPSGE-----------VVASGLSMPHSPRW--YQGKLWLLNSGRGELGYVDPQAGKFQPV 238 (335)
T ss_pred ccCCcccccccccCCeEEEEeCCCC-----------EEEcCccCCcCCcE--eCCeEEEEECCCCEEEEEcCCCCcEEEE
Confidence 10 001111 11 1 11111100 01123556666543 468999999999999999997 544433
Q ss_pred cCCCCccceEEEE
Q 013321 174 NYDDTFHLGIFVL 186 (445)
Q Consensus 174 ~~~~g~P~gIav~ 186 (445)
..-.|+|.|++..
T Consensus 239 a~vpG~~rGL~f~ 251 (335)
T TIGR03032 239 AFLPGFTRGLAFA 251 (335)
T ss_pred EECCCCCccccee
Confidence 3445677777776
No 61
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.81 E-value=19 Score=36.97 Aligned_cols=148 Identities=17% Similarity=0.252 Sum_probs=79.6
Q ss_pred CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecC--CCCcccC-CCCCccCccCCCcceEEEcC-CCCEEE
Q 013321 21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGS--PEGYYGH-VDGRPRGARMNHPKGLAVDD-RGNIYI 96 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~--~~G~~G~-~dG~~~~a~Ln~P~GIavD~-dG~LYV 96 (445)
..|.+|+.-.+|...++|....+++++..+-. +++..+... +-|.... +.| | .|+|.|+ ++.|||
T Consensus 129 ~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~--t~~~~~~~~~i~L~~~~k~N~G------f---EGlA~d~~~~~l~~ 197 (316)
T COG3204 129 SDPETIEYIGGNQFVIVDERDRALYLFTVDAD--TTVISAKVQKIPLGTTNKKNKG------F---EGLAWDPVDHRLFV 197 (316)
T ss_pred CChhHeEEecCCEEEEEehhcceEEEEEEcCC--ccEEeccceEEeccccCCCCcC------c---eeeecCCCCceEEE
Confidence 67999999888888889988888888765421 122221110 0011110 111 2 4999998 455888
Q ss_pred EeCCC-CEEEEEcC--CCcEEEecCcccCCCCCCCCCccCc--ccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321 97 ADTMN-MAIRKISD--TGVTTIAGGKWSRGVGHVDGPSEDA--KFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC 171 (445)
Q Consensus 97 AD~~N-~rIrkfd~--dGv~tiaGg~~G~g~G~~dgp~~~a--~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~ 171 (445)
|--.| -+|..++. +..+.-+. ..+..+. -+..-.++.+....++|+|..-..++|..++..++..
T Consensus 198 aKEr~P~~I~~~~~~~~~l~~~~~----------~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~ 267 (316)
T COG3204 198 AKERNPIGIFEVTQSPSSLSVHAS----------LDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVI 267 (316)
T ss_pred EEccCCcEEEEEecCCcccccccc----------cCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCee
Confidence 87654 34555541 11111110 1111121 1233344555455667777777777777777766542
Q ss_pred ee----------cCCCCccceEEEEecc
Q 013321 172 SD----------NYDDTFHLGIFVLVAA 189 (445)
Q Consensus 172 ~~----------~~~~g~P~gIav~~~a 189 (445)
.. .....-+.||+++..+
T Consensus 268 ~~lsL~~g~~gL~~dipqaEGiamDd~g 295 (316)
T COG3204 268 ELLSLTKGNHGLSSDIPQAEGIAMDDDG 295 (316)
T ss_pred eeEEeccCCCCCcccCCCcceeEECCCC
Confidence 22 2222346788887653
No 62
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.37 E-value=9.4 Score=40.75 Aligned_cols=113 Identities=20% Similarity=0.220 Sum_probs=74.4
Q ss_pred CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCc-cEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321 22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSR-PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 100 (445)
Q Consensus 22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~-v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~ 100 (445)
.-.++++.++|.+.++-+....|+.++... .+. +.++.|- -+.-.++++.++|+++++=..
T Consensus 205 ~v~~~~fs~d~~~l~s~s~D~tiriwd~~~--~~~~~~~l~gH----------------~~~v~~~~f~p~g~~i~Sgs~ 266 (456)
T KOG0266|consen 205 GVSDVAFSPDGSYLLSGSDDKTLRIWDLKD--DGRNLKTLKGH----------------STYVTSVAFSPDGNLLVSGSD 266 (456)
T ss_pred ceeeeEECCCCcEEEEecCCceEEEeeccC--CCeEEEEecCC----------------CCceEEEEecCCCCEEEEecC
Confidence 357899999999888888888888888721 122 3444332 223479999999998888777
Q ss_pred CCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc
Q 013321 101 NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD 170 (445)
Q Consensus 101 N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~ 170 (445)
.+.|+..|..+ +.++.+.. + .-.+ +....+++++++-...+.|+.++.....
T Consensus 267 D~tvriWd~~~~~~~~~l~~hs--------~---------~is~-~~f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 267 DGTVRIWDVRTGECVRKLKGHS--------D---------GISG-LAFSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred CCcEEEEeccCCeEEEeeeccC--------C---------ceEE-EEECCCCCEEEEcCCCccEEEEECCCCc
Confidence 88888888554 33333221 1 0112 2356677666666667777777777655
No 63
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=89.25 E-value=1.6 Score=46.20 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=53.6
Q ss_pred CCceEEEEcC-C------CcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC
Q 013321 21 MEPFSVAVSP-S------GELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN 93 (445)
Q Consensus 21 ~~P~gIAVdp-d------G~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~ 93 (445)
..|.||++-. + |.+||+-.+...+.+.++++ ...++.... ..+. . --.|.+|++.+||.
T Consensus 314 ~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g----~~~~~~~~f--l~~d--~------~gR~~dV~v~~DGa 379 (399)
T COG2133 314 IAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDG----NYKVVLTGF--LSGD--L------GGRPRDVAVAPDGA 379 (399)
T ss_pred cccceeEEecCCcCccccCcEEEEeecceeEEEeccCC----CcceEEEEE--EecC--C------CCcccceEECCCCe
Confidence 4578999974 2 68999998888888888874 322222110 1110 0 13789999999999
Q ss_pred EEEEeCC-CCEEEEEcCCC
Q 013321 94 IYIADTM-NMAIRKISDTG 111 (445)
Q Consensus 94 LYVAD~~-N~rIrkfd~dG 111 (445)
|||+|-. +.+|.|+...+
T Consensus 380 llv~~D~~~g~i~Rv~~~~ 398 (399)
T COG2133 380 LLVLTDQGDGRILRVSYAG 398 (399)
T ss_pred EEEeecCCCCeEEEecCCC
Confidence 9998877 77999998654
No 64
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=88.76 E-value=1.4 Score=36.83 Aligned_cols=42 Identities=26% Similarity=0.230 Sum_probs=32.2
Q ss_pred CCcEEEEEecCCCCCCCceEEEEcCCCc-EEEEeCCCCeEEEEeCC
Q 013321 6 GGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTS 50 (445)
Q Consensus 6 ~G~~v~tv~~Gs~~g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~d 50 (445)
+|.....+++| ...|.||++++++. |||++...+.|.++...
T Consensus 42 d~~~~~~va~g---~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 42 DGKEVKVVASG---FSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred eCCEeEEeecc---CCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 45556666653 35699999999755 99999999999988753
No 65
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=88.59 E-value=0.82 Score=32.29 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=21.0
Q ss_pred cCCCCCCCceEEEEcCCCcEEEEeCCCC
Q 013321 15 EGSKFGMEPFSVAVSPSGELLVLDSENS 42 (445)
Q Consensus 15 ~Gs~~g~~P~gIAVdpdG~LYVaDs~n~ 42 (445)
++......+.+|++|++|+|||+-..++
T Consensus 7 G~~~~~~~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 7 GGPGAQDYGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred CCCCCceeEEEEEECCCCCEEEEEeecC
Confidence 3333335799999999999999976543
No 66
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.57 E-value=24 Score=37.67 Aligned_cols=126 Identities=20% Similarity=0.250 Sum_probs=79.5
Q ss_pred cEEEEEecCCCCCCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEE-EecCCCCcccCCCCCccCccCCCcceE
Q 013321 8 YTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKL-VAGSPEGYYGHVDGRPRGARMNHPKGL 86 (445)
Q Consensus 8 ~~v~tv~~Gs~~g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~-vaG~~~G~~G~~dG~~~~a~Ln~P~GI 86 (445)
..+.++. |... ..++++++++|+++++-...+.|+.++..+ |++.. +.+.. + .=.++
T Consensus 237 ~~~~~l~-gH~~--~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~---~~~~~~l~~hs-------~---------~is~~ 294 (456)
T KOG0266|consen 237 RNLKTLK-GHST--YVTSVAFSPDGNLLVSGSDDGTVRIWDVRT---GECVRKLKGHS-------D---------GISGL 294 (456)
T ss_pred eEEEEec-CCCC--ceEEEEecCCCCEEEEecCCCcEEEEeccC---CeEEEeeeccC-------C---------ceEEE
Confidence 4444444 3333 458999999999999999899999888763 33322 22211 1 12488
Q ss_pred EEcCCCCEEEEeCCCCEEEEEcCCC-cE----EEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeE
Q 013321 87 AVDDRGNIYIADTMNMAIRKISDTG-VT----TIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAI 161 (445)
Q Consensus 87 avD~dG~LYVAD~~N~rIrkfd~dG-v~----tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rI 161 (445)
++.++|+++++=...+.|+.+|... .. ++.+.. .-. |...+...+++..+++-..++.|
T Consensus 295 ~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~---------------~~~-~~~~~~fsp~~~~ll~~~~d~~~ 358 (456)
T KOG0266|consen 295 AFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAE---------------NSA-PVTSVQFSPNGKYLLSASLDRTL 358 (456)
T ss_pred EECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCC---------------CCC-ceeEEEECCCCcEEEEecCCCeE
Confidence 9999999777667789999999654 32 221110 011 33334556777777676777777
Q ss_pred EEEECCCCce
Q 013321 162 REIQLHDDDC 171 (445)
Q Consensus 162 r~i~l~~~~~ 171 (445)
+..++....+
T Consensus 359 ~~w~l~~~~~ 368 (456)
T KOG0266|consen 359 KLWDLRSGKS 368 (456)
T ss_pred EEEEccCCcc
Confidence 7777665433
No 67
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=88.55 E-value=3.6 Score=44.24 Aligned_cols=129 Identities=15% Similarity=0.098 Sum_probs=82.3
Q ss_pred CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321 21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 100 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~ 100 (445)
.-|+|..+|.+|+.+++|-.-|.+.++.+. .+.+.+..|.. ..+|. ..+-|..|..++|..+|.|+|+|..
T Consensus 168 qvhyg~t~df~~~~d~TgV~mH~t~kp~pk---la~~~L~l~~~-tvp~~-----~~~~f~~~tsc~v~~n~~ihvfa~r 238 (501)
T KOG3567|consen 168 QVHYGLTIDFDGNYDVTGVGMHQTEKPQPK---LAKTMLLLGDG-TVPGE-----GTKHFETPTSCAVEENGPIHVFAYR 238 (501)
T ss_pred EeccccccCCCCCcccccceeeeeccCCch---hhceEEeecCC-ccCCC-----CccccCCCceEEEecCcceeeEEee
Confidence 458999999999999999999999998876 24555555542 11221 1235888999999999999999987
Q ss_pred -CCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEE-EECCCCeEEEEECCCCeEEEEECC
Q 013321 101 -NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVV-YVGSSCSLLVIDRGNQAIREIQLH 167 (445)
Q Consensus 101 -N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~-~vd~dG~LyVaD~gn~rIr~i~l~ 167 (445)
|-+|..++..|-....- ..| -...-+.. .|...- +.+-...+=|+|..+.|++.+...
T Consensus 239 ~hTh~Lgk~vsG~lv~q~-~~g--~w~~ig~r------~Pq~pqlf~~v~~~~~iadgD~~~vrC~~~s 298 (501)
T KOG3567|consen 239 CHTHILGKVVSGYLVAQK-HEG--HWTLIGRR------DPQLPQLFEPVNHIVCVADGDNQRVRCFFQS 298 (501)
T ss_pred eeehhhcceeeeeEeeec-cCc--ceeecccc------CCCchhhhcCCCcceeeecCCceEEEEEEcc
Confidence 66777777666332110 000 01111111 122111 123333667889999999999755
No 68
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=88.27 E-value=32 Score=37.78 Aligned_cols=112 Identities=24% Similarity=0.267 Sum_probs=63.8
Q ss_pred CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321 21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 100 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~ 100 (445)
++-.+++.+..|+|+.+.. ...+++++..+. ++.... ....=.+|.|+|+.++|.+.|+=..
T Consensus 364 nqI~~~~~~~~~~~~t~g~-Dd~l~~~~~~~~-------------~~t~~~----~~~lg~QP~~lav~~d~~~avv~~~ 425 (603)
T KOG0318|consen 364 NQIKGMAASESGELFTIGW-DDTLRVISLKDN-------------GYTKSE----VVKLGSQPKGLAVLSDGGTAVVACI 425 (603)
T ss_pred ceEEEEeecCCCcEEEEec-CCeEEEEecccC-------------cccccc----eeecCCCceeEEEcCCCCEEEEEec
Confidence 4455666666666665543 345666654321 121110 0011248999999999864443333
Q ss_pred CCEEEEEc-CCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc
Q 013321 101 NMAIRKIS-DTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD 170 (445)
Q Consensus 101 N~rIrkfd-~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~ 170 (445)
.+ |..+. ..+++++..+ ..+.+++ +.++++..++-...+.|+.+++.+..
T Consensus 426 ~~-iv~l~~~~~~~~~~~~------------------y~~s~vA-v~~~~~~vaVGG~Dgkvhvysl~g~~ 476 (603)
T KOG0318|consen 426 SD-IVLLQDQTKVSSIPIG------------------YESSAVA-VSPDGSEVAVGGQDGKVHVYSLSGDE 476 (603)
T ss_pred Cc-EEEEecCCcceeeccc------------------cccceEE-EcCCCCEEEEecccceEEEEEecCCc
Confidence 33 44444 4556665321 1344554 68888888777777889999988754
No 69
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=87.52 E-value=6.6 Score=39.50 Aligned_cols=72 Identities=11% Similarity=0.063 Sum_probs=52.6
Q ss_pred CceEEEEcCCCcEEEEeCC--CCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321 22 EPFSVAVSPSGELLVLDSE--NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT 99 (445)
Q Consensus 22 ~P~gIAVdpdG~LYVaDs~--n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~ 99 (445)
.-.|+.+..+|.||.+-.. .++|++++..+ |++....--+... .-.||++-. +.||..-+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~t---g~~~~~~~l~~~~--------------FgEGit~~~-d~l~qLTW 107 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLET---GKVLQSVPLPPRY--------------FGEGITILG-DKLYQLTW 107 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTT---SSEEEEEE-TTT----------------EEEEEEET-TEEEEEES
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCC---CcEEEEEECCccc--------------cceeEEEEC-CEEEEEEe
Confidence 3568999778999999864 46899999884 5554433332222 334999984 57999999
Q ss_pred CCCEEEEEcCCC
Q 013321 100 MNMAIRKISDTG 111 (445)
Q Consensus 100 ~N~rIrkfd~dG 111 (445)
.++...++|.+.
T Consensus 108 k~~~~f~yd~~t 119 (264)
T PF05096_consen 108 KEGTGFVYDPNT 119 (264)
T ss_dssp SSSEEEEEETTT
T ss_pred cCCeEEEEcccc
Confidence 999999999876
No 70
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=86.35 E-value=25 Score=31.72 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=41.2
Q ss_pred ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCC
Q 013321 23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM 102 (445)
Q Consensus 23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~ 102 (445)
..++++++++.++++...++.|..++... ++....... .-.....+++++++.++++-..++
T Consensus 96 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~---------------~~~~i~~~~~~~~~~~l~~~~~~~ 157 (289)
T cd00200 96 VSSVAFSPDGRILSSSSRDKTIKVWDVET---GKCLTTLRG---------------HTDWVNSVAFSPDGTFVASSSQDG 157 (289)
T ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCC---cEEEEEecc---------------CCCcEEEEEEcCcCCEEEEEcCCC
Confidence 45666666666666665566666666541 111111110 112456888998877777666577
Q ss_pred EEEEEcCC
Q 013321 103 AIRKISDT 110 (445)
Q Consensus 103 rIrkfd~d 110 (445)
.|+.+|..
T Consensus 158 ~i~i~d~~ 165 (289)
T cd00200 158 TIKLWDLR 165 (289)
T ss_pred cEEEEEcc
Confidence 88888854
No 71
>PRK02888 nitrous-oxide reductase; Validated
Probab=85.80 E-value=10 Score=42.56 Aligned_cols=82 Identities=9% Similarity=0.115 Sum_probs=53.2
Q ss_pred CCcceEEEcCCCC-EEEEeCCCCEEEEEcCCCcE-EEecCcccCCCCCCCCCccCccc-CCCceEEEECCCCeEEEEECC
Q 013321 81 NHPKGLAVDDRGN-IYIADTMNMAIRKISDTGVT-TIAGGKWSRGVGHVDGPSEDAKF-SNDFDVVYVGSSCSLLVIDRG 157 (445)
Q Consensus 81 n~P~GIavD~dG~-LYVAD~~N~rIrkfd~dGv~-tiaGg~~G~g~G~~dgp~~~a~f-~~P~gI~~vd~dG~LyVaD~g 157 (445)
+.|+||+++|||. +||+......|.+||..... .+++... ..+.-..+..+ ..|.... .|.+|+.|++=.-
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~-----~~~~vvaevevGlGPLHTa-FDg~G~aytslf~ 394 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK-----PRDAVVAEPELGLGPLHTA-FDGRGNAYTTLFL 394 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC-----ccceEEEeeccCCCcceEE-ECCCCCEEEeEee
Confidence 6899999999999 88999889999999965422 1111100 00000001111 3566666 4888889888777
Q ss_pred CCeEEEEECCC
Q 013321 158 NQAIREIQLHD 168 (445)
Q Consensus 158 n~rIr~i~l~~ 168 (445)
...|.+.+++.
T Consensus 395 dsqv~kwn~~~ 405 (635)
T PRK02888 395 DSQIVKWNIEA 405 (635)
T ss_pred cceeEEEehHH
Confidence 77888888765
No 72
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=85.68 E-value=44 Score=33.96 Aligned_cols=73 Identities=23% Similarity=0.351 Sum_probs=48.2
Q ss_pred ccCCCcceEEEcCCCCEEEEeCCCCEEEEEc-CCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEE---CCCCeE
Q 013321 78 ARMNHPKGLAVDDRGNIYIADTMNMAIRKIS-DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV---GSSCSL 151 (445)
Q Consensus 78 a~Ln~P~GIavD~dG~LYVAD~~N~rIrkfd-~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~v---d~dG~L 151 (445)
...-+.++|..+++|+++|+=...+.|.+|+ .+| +..+ +|+.+. .... ....|.+-++.-++ +.++.|
T Consensus 141 ~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~l-gG~~~~--df~~---~~~~f~~QHdar~~~~~~~~~~I 214 (299)
T PF14269_consen 141 WDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRL-GGKRNS--DFTL---PATNFSWQHDARFLNESNDDGTI 214 (299)
T ss_pred CCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEe-CCCCCC--cccc---cCCcEeeccCCEEeccCCCCCEE
Confidence 3456778999999999999999999999999 667 3343 444221 1111 34456666666544 355677
Q ss_pred EEEEC
Q 013321 152 LVIDR 156 (445)
Q Consensus 152 yVaD~ 156 (445)
.|.|-
T Consensus 215 slFDN 219 (299)
T PF14269_consen 215 SLFDN 219 (299)
T ss_pred EEEcC
Confidence 77775
No 73
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=85.18 E-value=13 Score=36.68 Aligned_cols=114 Identities=14% Similarity=0.278 Sum_probs=57.7
Q ss_pred EEEEcCCCcEEEEeCCCCeEEEEeCCCCCC-----CccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321 25 SVAVSPSGELLVLDSENSNIYKISTSLSPY-----SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT 99 (445)
Q Consensus 25 gIAVdpdG~LYVaDs~n~rI~kid~dg~~~-----G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~ 99 (445)
.|+++++|-||..+. ++.|+|........ +..+.+.+. ..+...-|.++++|.||+.+.
T Consensus 85 ~i~~d~~G~LYaV~~-~G~lyR~~~~~~~~~~W~~~~~~~iG~~---------------GW~~f~~vfa~~~GvLY~i~~ 148 (229)
T PF14517_consen 85 FIFFDPTGVLYAVTP-DGKLYRHPRPTNGSDNWIGGSGKKIGGT---------------GWNDFDAVFAGPNGVLYAITP 148 (229)
T ss_dssp EEEE-TTS-EEEEET-T-EEEEES---STT--HHH-HSEEEE-S---------------SGGGEEEEEE-TTS-EEEEET
T ss_pred EEEecCCccEEEecc-ccceeeccCCCccCcchhhccceecccC---------------CCccceEEEeCCCccEEEEcC
Confidence 799999999998876 67888876542210 011222111 244567899999999999996
Q ss_pred CCCEEEEEc-CCC-------cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321 100 MNMAIRKIS-DTG-------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC 171 (445)
Q Consensus 100 ~N~rIrkfd-~dG-------v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~ 171 (445)
. .++.+.. +++ .+.+.++ .+ +..+.-| ...++|.||.+ ..++.|++-......|
T Consensus 149 d-g~~~~~~~p~~~~~~W~~~s~~v~~-----~g----------w~~~~~i-~~~~~g~L~~V-~~~G~lyr~~~p~~~~ 210 (229)
T PF14517_consen 149 D-GRLYRRYRPDGGSDRWLSGSGLVGG-----GG----------WDSFHFI-FFSPDGNLWAV-KSNGKLYRGRPPQNGC 210 (229)
T ss_dssp T-E-EEEE---SSTT--HHHH-EEEES-----SS----------GGGEEEE-EE-TTS-EEEE--ETTEEEEES---STT
T ss_pred C-CceEEeCCCCCCCCccccccceecc-----CC----------cccceEE-eeCCCCcEEEE-ecCCEEeccCCcccCC
Confidence 5 4777663 222 1222111 11 1223334 46889999999 4578898887665444
Q ss_pred e
Q 013321 172 S 172 (445)
Q Consensus 172 ~ 172 (445)
.
T Consensus 211 ~ 211 (229)
T PF14517_consen 211 P 211 (229)
T ss_dssp -
T ss_pred c
Confidence 3
No 74
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=85.16 E-value=0.73 Score=32.53 Aligned_cols=21 Identities=43% Similarity=0.749 Sum_probs=17.6
Q ss_pred CCcceEEEcCCCCEEEEeCCC
Q 013321 81 NHPKGLAVDDRGNIYIADTMN 101 (445)
Q Consensus 81 n~P~GIavD~dG~LYVAD~~N 101 (445)
..+.+|++|++|+|||+=..+
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred eeEEEEEECCCCCEEEEEeec
Confidence 468999999999999985543
No 75
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=85.15 E-value=18 Score=40.10 Aligned_cols=80 Identities=20% Similarity=0.237 Sum_probs=50.5
Q ss_pred CccCCCcceEEEcC-CCCEEEEeCCCC----------------EEEEEcCC-C----------cEEEecCcccCCCCCCC
Q 013321 77 GARMNHPKGLAVDD-RGNIYIADTMNM----------------AIRKISDT-G----------VTTIAGGKWSRGVGHVD 128 (445)
Q Consensus 77 ~a~Ln~P~GIavD~-dG~LYVAD~~N~----------------rIrkfd~d-G----------v~tiaGg~~G~g~G~~d 128 (445)
...|..|.+|++.+ .|.+|++.+.|. .|.++-+. + ++..+|.......+. .
T Consensus 413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~-~ 491 (616)
T COG3211 413 ATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGA-S 491 (616)
T ss_pred CccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccc-c
Confidence 45799999999998 677999999876 35555421 1 233333222111111 1
Q ss_pred CCccCcccCCCceEEEECCCCeEEEEECCC
Q 013321 129 GPSEDAKFSNDFDVVYVGSSCSLLVIDRGN 158 (445)
Q Consensus 129 gp~~~a~f~~P~gI~~vd~dG~LyVaD~gn 158 (445)
..-...-|..|-+|+ +|+.|+|||+.-++
T Consensus 492 ~~~~~~~f~~PDnl~-fD~~GrLWi~TDg~ 520 (616)
T COG3211 492 ANINANWFNSPDNLA-FDPWGRLWIQTDGS 520 (616)
T ss_pred cCcccccccCCCceE-ECCCCCEEEEecCC
Confidence 112225688999996 79999999987553
No 76
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=84.95 E-value=27 Score=35.88 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=44.0
Q ss_pred ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCC
Q 013321 23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM 102 (445)
Q Consensus 23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~ 102 (445)
-.+|+++|-++.|++-+....|+.+|.... .+.|. -.+..+--+|+||+|.||.+=.++.
T Consensus 103 V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~-------------~cqg~-------l~~~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 103 VNSLSVSPKDDTFLSSSLDKTVRLWDLRVK-------------KCQGL-------LNLSGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EEEEEecCCCCeEEecccCCeEEeeEecCC-------------CCceE-------EecCCCcceeECCCCcEEEEecCCC
Confidence 457777776677777776667776665410 11110 1234556789999999988877777
Q ss_pred EEEEEc
Q 013321 103 AIRKIS 108 (445)
Q Consensus 103 rIrkfd 108 (445)
.|..+|
T Consensus 163 ~IkLyD 168 (311)
T KOG1446|consen 163 LIKLYD 168 (311)
T ss_pred eEEEEE
Confidence 999998
No 77
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=84.87 E-value=28 Score=39.81 Aligned_cols=124 Identities=22% Similarity=0.253 Sum_probs=73.6
Q ss_pred CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCC-----------CCc---ccCCCCCccCc---------
Q 013321 22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSP-----------EGY---YGHVDGRPRGA--------- 78 (445)
Q Consensus 22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~-----------~G~---~G~~dG~~~~a--------- 78 (445)
.-..++.+|||.+.++....+.|.+++...+ ...+....+ .|. +-..||..+..
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg---fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR 428 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSG---FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR 428 (893)
T ss_pred ceeeEEECCCCcEEEeccCCCcEEEEeccCc---eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee
Confidence 4578999999999999988888888876532 111111111 011 11234543322
Q ss_pred cCCCcc-----eEEEcCCCCEEEEeC-CCCEEEEEcC-CC-c-EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC
Q 013321 79 RMNHPK-----GLAVDDRGNIYIADT-MNMAIRKISD-TG-V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC 149 (445)
Q Consensus 79 ~Ln~P~-----GIavD~dG~LYVAD~-~N~rIrkfd~-dG-v-~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG 149 (445)
.|..|. .||+|+.|.|.+|=. .+..|.+.+. .| . -++.| .. .|..-++.++.+
T Consensus 429 Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG-HE-----------------gPVs~l~f~~~~ 490 (893)
T KOG0291|consen 429 TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG-HE-----------------GPVSGLSFSPDG 490 (893)
T ss_pred eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC-CC-----------------CcceeeEEcccc
Confidence 233443 899999998666544 4567888883 45 2 33333 21 122212357888
Q ss_pred eEEEEECCCCeEEEEEC
Q 013321 150 SLLVIDRGNQAIREIQL 166 (445)
Q Consensus 150 ~LyVaD~gn~rIr~i~l 166 (445)
++++.-.....|++.+.
T Consensus 491 ~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 491 SLLASGSWDKTVRIWDI 507 (893)
T ss_pred CeEEeccccceEEEEEe
Confidence 88888888888887774
No 78
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=84.79 E-value=47 Score=33.50 Aligned_cols=115 Identities=13% Similarity=0.081 Sum_probs=66.4
Q ss_pred CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321 22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 101 (445)
Q Consensus 22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N 101 (445)
.-.||++-. +.||..-..++...+++.+. ...+..+.-.. .--|||.| ...||++|. +
T Consensus 91 FgEGit~~~-d~l~qLTWk~~~~f~yd~~t--l~~~~~~~y~~-----------------EGWGLt~d-g~~Li~SDG-S 148 (264)
T PF05096_consen 91 FGEGITILG-DKLYQLTWKEGTGFVYDPNT--LKKIGTFPYPG-----------------EGWGLTSD-GKRLIMSDG-S 148 (264)
T ss_dssp -EEEEEEET-TEEEEEESSSSEEEEEETTT--TEEEEEEE-SS-----------------S--EEEEC-SSCEEEE-S-S
T ss_pred cceeEEEEC-CEEEEEEecCCeEEEEcccc--ceEEEEEecCC-----------------cceEEEcC-CCEEEEECC-c
Confidence 357888875 58999999999999999863 11222221111 22399976 346999996 7
Q ss_pred CEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee
Q 013321 102 MAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS 172 (445)
Q Consensus 102 ~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~ 172 (445)
.+|+.+|+.. +.++.-...|. ....-+.+=++ +|.||.-=-..++|.+|++..+.+.
T Consensus 149 ~~L~~~dP~~f~~~~~i~V~~~g~------------pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~ 208 (264)
T PF05096_consen 149 SRLYFLDPETFKEVRTIQVTDNGR------------PVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVV 208 (264)
T ss_dssp SEEEEE-TTT-SEEEEEE-EETTE------------E---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEE
T ss_pred cceEEECCcccceEEEEEEEECCE------------ECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEE
Confidence 8999999765 22222111110 11122334444 5777777677888888888775554
No 79
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=84.34 E-value=3.1 Score=42.91 Aligned_cols=55 Identities=25% Similarity=0.337 Sum_probs=41.7
Q ss_pred CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEE
Q 013321 21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIA 97 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVA 97 (445)
..|++... .+|.|||+|++.+.|.+++++. |+...++--+ | .|.||++. |++.|+
T Consensus 203 smPhSPRW-hdgrLwvldsgtGev~~vD~~~---G~~e~Va~vp----G------------~~rGL~f~--G~llvV 257 (335)
T TIGR03032 203 SMPHSPRW-YQGKLWLLNSGRGELGYVDPQA---GKFQPVAFLP----G------------FTRGLAFA--GDFAFV 257 (335)
T ss_pred cCCcCCcE-eCCeEEEEECCCCEEEEEcCCC---CcEEEEEECC----C------------CCccccee--CCEEEE
Confidence 45666666 3789999999999999999873 6777776543 1 57799998 776665
No 80
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=84.25 E-value=38 Score=34.79 Aligned_cols=120 Identities=13% Similarity=0.056 Sum_probs=71.8
Q ss_pred CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321 22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 101 (445)
Q Consensus 22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N 101 (445)
.+--+|+||+|-|+++-.++..|..+|...-..|=..++. - .+ .....=++|-+.++|...+.-+.+
T Consensus 142 ~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~-i-------~~-----~~~~ew~~l~FS~dGK~iLlsT~~ 208 (311)
T KOG1446|consen 142 GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFS-I-------TD-----NDEAEWTDLEFSPDGKSILLSTNA 208 (311)
T ss_pred CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEc-c-------CC-----CCccceeeeEEcCCCCEEEEEeCC
Confidence 3456799999988888877778888876411001111111 0 01 123344589999999966666667
Q ss_pred CEEEEEcC-CC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC
Q 013321 102 MAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD 169 (445)
Q Consensus 102 ~rIrkfd~-dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~ 169 (445)
+-|..+|. +| ..++.+-.. ....|-+ ++..+++..++.-.++++|....++..
T Consensus 209 s~~~~lDAf~G~~~~tfs~~~~--------------~~~~~~~-a~ftPds~Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 209 SFIYLLDAFDGTVKSTFSGYPN--------------AGNLPLS-ATFTPDSKFVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred CcEEEEEccCCcEeeeEeeccC--------------CCCccee-EEECCCCcEEEEecCCCcEEEEEcCCC
Confidence 88888883 66 334332111 1112222 345677877777777888888887553
No 81
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=83.06 E-value=35 Score=30.73 Aligned_cols=111 Identities=16% Similarity=0.122 Sum_probs=59.2
Q ss_pred ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeCCC
Q 013321 23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMN 101 (445)
Q Consensus 23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~N 101 (445)
...+++++++.++++...++.|..++... ++....... .-.....+++.++|. |+++.. +
T Consensus 138 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~---~~~~~~~~~---------------~~~~i~~~~~~~~~~~l~~~~~-~ 198 (289)
T cd00200 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRT---GKCVATLTG---------------HTGEVNSVAFSPDGEKLLSSSS-D 198 (289)
T ss_pred EEEEEEcCcCCEEEEEcCCCcEEEEEccc---cccceeEec---------------CccccceEEECCCcCEEEEecC-C
Confidence 56666666666555555456666666541 111111100 011356888999885 555554 7
Q ss_pred CEEEEEcCCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321 102 MAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD 168 (445)
Q Consensus 102 ~rIrkfd~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~ 168 (445)
+.|+.+|... ....... + .-.....+. ..+++.++++...++.|+.++...
T Consensus 199 ~~i~i~d~~~~~~~~~~~------~---------~~~~i~~~~-~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 199 GTIKLWDLSTGKCLGTLR------G---------HENGVNSVA-FSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred CcEEEEECCCCceecchh------h---------cCCceEEEE-EcCCCcEEEEEcCCCcEEEEEcCC
Confidence 8888888653 2111100 0 001233444 455566777666677888887664
No 82
>PRK02888 nitrous-oxide reductase; Validated
Probab=81.81 E-value=5 Score=44.89 Aligned_cols=78 Identities=23% Similarity=0.262 Sum_probs=54.2
Q ss_pred CCCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCC---CCc---cEEEecCCCCcccCCCCCccCccCCCcceEEEcCCC
Q 013321 20 GMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSP---YSR---PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG 92 (445)
Q Consensus 20 g~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~---~G~---v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG 92 (445)
+.+|+||+++|||. +||+.-..+.|-+|+...-. .++ -.++++... -=..|...++|.+|
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve-------------vGlGPLHTaFDg~G 386 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE-------------LGLGPLHTAFDGRG 386 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec-------------cCCCcceEEECCCC
Confidence 48999999999998 78888778889999865210 000 011222210 01368899999999
Q ss_pred CEEEEeCCCCEEEEEcCC
Q 013321 93 NIYIADTMNMAIRKISDT 110 (445)
Q Consensus 93 ~LYVAD~~N~rIrkfd~d 110 (445)
+.|++=.....|.+.|-+
T Consensus 387 ~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 387 NAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred CEEEeEeecceeEEEehH
Confidence 999887777788888843
No 83
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=81.21 E-value=51 Score=33.79 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=43.0
Q ss_pred EcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCCEEEEE
Q 013321 28 VSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKI 107 (445)
Q Consensus 28 VdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~rIrkf 107 (445)
+..+|.+|+. ..+++|..+++++ +++... ... .+ ....++.|..++ +|.|||.+... .+..+
T Consensus 65 ~~~dg~v~~~-~~~G~i~A~d~~~---g~~~W~-~~~---~~------~~~~~~~~~~~~---~G~i~~g~~~g-~~y~l 126 (370)
T COG1520 65 ADGDGTVYVG-TRDGNIFALNPDT---GLVKWS-YPL---LG------AVAQLSGPILGS---DGKIYVGSWDG-KLYAL 126 (370)
T ss_pred EeeCCeEEEe-cCCCcEEEEeCCC---CcEEec-ccC---cC------cceeccCceEEe---CCeEEEecccc-eEEEE
Confidence 6668888887 4456888888874 222210 000 00 112355555544 89999999854 89999
Q ss_pred cC-CCcEEE
Q 013321 108 SD-TGVTTI 115 (445)
Q Consensus 108 d~-dGv~ti 115 (445)
|. +|....
T Consensus 127 d~~~G~~~W 135 (370)
T COG1520 127 DASTGTLVW 135 (370)
T ss_pred ECCCCcEEE
Confidence 98 785444
No 84
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=80.53 E-value=44 Score=36.77 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=67.5
Q ss_pred CCCCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEE
Q 013321 18 KFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIA 97 (445)
Q Consensus 18 ~~g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVA 97 (445)
+.+.+|.++|+.++|.+.|+-... .|..+... +.+..+- --..|.++|+.+++.....
T Consensus 403 ~lg~QP~~lav~~d~~~avv~~~~-~iv~l~~~----~~~~~~~-----------------~~y~~s~vAv~~~~~~vaV 460 (603)
T KOG0318|consen 403 KLGSQPKGLAVLSDGGTAVVACIS-DIVLLQDQ----TKVSSIP-----------------IGYESSAVAVSPDGSEVAV 460 (603)
T ss_pred ecCCCceeEEEcCCCCEEEEEecC-cEEEEecC----Ccceeec-----------------cccccceEEEcCCCCEEEE
Confidence 456899999999987654443223 34444322 1111110 1126889999999987776
Q ss_pred eCCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321 98 DTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC 171 (445)
Q Consensus 98 D~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~ 171 (445)
=....+|+.+.-.|-....... ....-..+++|.+ .+++..+++---++.|..++......
T Consensus 461 GG~Dgkvhvysl~g~~l~ee~~------------~~~h~a~iT~vay-Spd~~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 461 GGQDGKVHVYSLSGDELKEEAK------------LLEHRAAITDVAY-SPDGAYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred ecccceEEEEEecCCcccceee------------eecccCCceEEEE-CCCCcEEEEeccCCcEEEEEcccCce
Confidence 6666777777755521111000 0011123456664 66666555555577888888765443
No 85
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=80.18 E-value=15 Score=38.83 Aligned_cols=79 Identities=20% Similarity=0.351 Sum_probs=50.5
Q ss_pred CCCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEec-CCCCcccCCCCCccCccCCCcceEEEc--C--CCC
Q 013321 20 GMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAG-SPEGYYGHVDGRPRGARMNHPKGLAVD--D--RGN 93 (445)
Q Consensus 20 g~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG-~~~G~~G~~dG~~~~a~Ln~P~GIavD--~--dG~ 93 (445)
..+|.|+++|. .|.|||++. +.-|+++..+-........++. ...+. ..-..||++- . .|-
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE-~~GIW~y~Aep~~~~~~~~v~~~~g~~l------------~aDvEGlaly~~~~g~gY 273 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEE-DVGIWRYDAEPEGGNDRTLVASADGDGL------------VADVEGLALYYGSDGKGY 273 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEET-TTEEEEEESSCCC-S--EEEEEBSSSSB-------------S-EEEEEEEE-CCC-EE
T ss_pred CCcceEEEEecccCCEEEecC-ccEEEEEecCCCCCCcceeeeccccccc------------ccCccceEEEecCCCCeE
Confidence 36899999998 789999995 5789999876322111222221 11011 1234588884 3 345
Q ss_pred EEEEeCCCCEEEEEcCCC
Q 013321 94 IYIADTMNMAIRKISDTG 111 (445)
Q Consensus 94 LYVAD~~N~rIrkfd~dG 111 (445)
|+|++.+++...+|+..+
T Consensus 274 LivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 274 LIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEEGGGTEEEEEESST
T ss_pred EEEEcCCCCeEEEEecCC
Confidence 999999999999999765
No 86
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=78.89 E-value=30 Score=37.42 Aligned_cols=90 Identities=14% Similarity=0.154 Sum_probs=57.8
Q ss_pred CCceEEEEcCCC-cEEEEeCCCCeEEEEeCCCCC--------CCccEEE---ecCCCCcccCCCCCcc------------
Q 013321 21 MEPFSVAVSPSG-ELLVLDSENSNIYKISTSLSP--------YSRPKLV---AGSPEGYYGHVDGRPR------------ 76 (445)
Q Consensus 21 ~~P~gIAVdpdG-~LYVaDs~n~rI~kid~dg~~--------~G~v~~v---aG~~~G~~G~~dG~~~------------ 76 (445)
.-|+.+-+.|++ ++|++...+++|+.+|..... .|.+..+ .++.....-..++..+
T Consensus 300 ~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~ 379 (503)
T KOG0282|consen 300 KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKN 379 (503)
T ss_pred CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchh
Confidence 568899999987 899999999999999865321 2222222 1111111222233321
Q ss_pred ---CccCCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC
Q 013321 77 ---GARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG 111 (445)
Q Consensus 77 ---~a~Ln~P~GIavD~dG~LYVAD~~N~rIrkfd~dG 111 (445)
.+....| .|++.|+|..++|.+..++|..|+..-
T Consensus 380 i~~~~~hsmP-~~~~~P~~~~~~aQs~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 380 IADPEMHTMP-CLTLHPNGKWFAAQSMDNYIAIFSTVP 416 (503)
T ss_pred hcchhhccCc-ceecCCCCCeehhhccCceEEEEeccc
Confidence 1222233 678889999999999999999998543
No 87
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=78.64 E-value=21 Score=41.29 Aligned_cols=134 Identities=17% Similarity=0.165 Sum_probs=90.2
Q ss_pred CceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEeC
Q 013321 22 EPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADT 99 (445)
Q Consensus 22 ~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD~ 99 (445)
....+.++. ++.+|.+|.....|.+...++... ..+.+. ....|.++++|- .+++|.+|.
T Consensus 438 ~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~---~~~~~~---------------g~~~~~~lavD~~~~~~y~tDe 499 (877)
T KOG1215|consen 438 NAVALDFDVLNNRIYWADLSDEKICRASQDGSSE---CELCGD---------------GLCIPEGLAVDWIGDNIYWTDE 499 (877)
T ss_pred cceEEEEEecCCEEEEEeccCCeEeeeccCCCcc---ceEecc---------------CccccCcEEEEeccCCceeccc
Confidence 445555554 557899998888888888774321 112221 266789999997 667999999
Q ss_pred CCCEEEEEcCCCc--EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECC-CCeEEEEECCCCceeec--
Q 013321 100 MNMAIRKISDTGV--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-NQAIREIQLHDDDCSDN-- 174 (445)
Q Consensus 100 ~N~rIrkfd~dGv--~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~g-n~rIr~i~l~~~~~~~~-- 174 (445)
.+..|.+.+.+|. .++... .+..|..+++....|.+|..|.+ ..+|.+-.+++......
T Consensus 500 ~~~~i~v~~~~g~~~~vl~~~----------------~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~ 563 (877)
T KOG1215|consen 500 GNCLIEVADLDGSSRKVLVSK----------------DLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVT 563 (877)
T ss_pred CCceeEEEEccCCceeEEEec----------------CCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEe
Confidence 9999999996662 333321 11345556666677889999987 45788888877554432
Q ss_pred CCCCccceEEEEecc
Q 013321 175 YDDTFHLGIFVLVAA 189 (445)
Q Consensus 175 ~~~g~P~gIav~~~a 189 (445)
.+...|.|++.+...
T Consensus 564 ~~~~~p~glt~d~~~ 578 (877)
T KOG1215|consen 564 NGILWPNGLTIDYET 578 (877)
T ss_pred CCccCCCcceEEeec
Confidence 334678888776543
No 88
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=78.01 E-value=9.8 Score=27.15 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=30.9
Q ss_pred CeEEEEECCCC-eEEEEECCCCceee--cCCCCccceEEEE
Q 013321 149 CSLLVIDRGNQ-AIREIQLHDDDCSD--NYDDTFHLGIFVL 186 (445)
Q Consensus 149 G~LyVaD~gn~-rIr~i~l~~~~~~~--~~~~g~P~gIav~ 186 (445)
+.||.+|.+.+ .|.+..++|..... ......|.||+++
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD 41 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVD 41 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEEC
Confidence 57999999999 99999999976443 4556789999875
No 89
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=77.10 E-value=29 Score=39.43 Aligned_cols=122 Identities=13% Similarity=0.035 Sum_probs=73.4
Q ss_pred CCceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321 21 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT 99 (445)
Q Consensus 21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~ 99 (445)
..-++|++.| |++.||+.+-.++|+.++... -+|....... ..-+.||+.|+|...|.=+
T Consensus 410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d---~~Vv~W~Dl~----------------~lITAvcy~PdGk~avIGt 470 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISD---KKVVDWNDLR----------------DLITAVCYSPDGKGAVIGT 470 (712)
T ss_pred CeeEEEEecccCCCcEeecccccceEEeecCc---CeeEeehhhh----------------hhheeEEeccCCceEEEEE
Confidence 3468999999 788999999899888887541 2222222110 1345899999999999999
Q ss_pred CCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCC
Q 013321 100 MNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHD 168 (445)
Q Consensus 100 ~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG-~LyVaD~gn~rIr~i~l~~ 168 (445)
.++.++.++..|.....-.... ......++-..-+|+-+...+- .|+|+ +...|||+|++..
T Consensus 471 ~~G~C~fY~t~~lk~~~~~~I~------~~~~Kk~~~~rITG~Q~~p~~~~~vLVT-SnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 471 FNGYCRFYDTEGLKLVSDFHIR------LHNKKKKQGKRITGLQFFPGDPDEVLVT-SNDSRIRIYDGRD 533 (712)
T ss_pred eccEEEEEEccCCeEEEeeeEe------eccCccccCceeeeeEecCCCCCeEEEe-cCCCceEEEeccc
Confidence 9999999998884332210000 0000001111234444433332 46666 4567999999843
No 90
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=76.59 E-value=28 Score=34.87 Aligned_cols=84 Identities=17% Similarity=0.263 Sum_probs=50.5
Q ss_pred CccCCCc-ceEEEcCCCCEEEEeCCCCEEEEEcCC-C--cEEEecCcccCCCCCCCCCccCcccC-CCceEEEECCCCeE
Q 013321 77 GARMNHP-KGLAVDDRGNIYIADTMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFS-NDFDVVYVGSSCSL 151 (445)
Q Consensus 77 ~a~Ln~P-~GIavD~dG~LYVAD~~N~rIrkfd~d-G--v~tiaGg~~G~g~G~~dgp~~~a~f~-~P~gI~~vd~dG~L 151 (445)
...|-+| +.+.+.++|+.-.+-..+..|+.+|.+ | .....|-+. -....+.+|+ ....++--..+|.+
T Consensus 179 sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn-------~eykldc~l~qsdthV~sgSEDG~V 251 (307)
T KOG0316|consen 179 SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN-------MEYKLDCCLNQSDTHVFSGSEDGKV 251 (307)
T ss_pred hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc-------ceeeeeeeecccceeEEeccCCceE
Confidence 3346677 599999999999999999999999965 4 222222111 1122334443 34444434566788
Q ss_pred EEEECCC-CeEEEEECC
Q 013321 152 LVIDRGN-QAIREIQLH 167 (445)
Q Consensus 152 yVaD~gn-~rIr~i~l~ 167 (445)
|+-|--+ ..|.++...
T Consensus 252 y~wdLvd~~~~sk~~~~ 268 (307)
T KOG0316|consen 252 YFWDLVDETQISKLSVV 268 (307)
T ss_pred EEEEeccceeeeeeccC
Confidence 8888644 334444433
No 91
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=76.15 E-value=52 Score=30.54 Aligned_cols=68 Identities=21% Similarity=0.387 Sum_probs=41.0
Q ss_pred EEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCCEEEE
Q 013321 27 AVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRK 106 (445)
Q Consensus 27 AVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~rIrk 106 (445)
++..+|.||+++ .++.|+.++... |++..-.-.+ + .+..+ .++ .++.|||+...+ +|+.
T Consensus 32 ~~~~~~~v~~~~-~~~~l~~~d~~t---G~~~W~~~~~-~------------~~~~~--~~~-~~~~v~v~~~~~-~l~~ 90 (238)
T PF13360_consen 32 AVPDGGRVYVAS-GDGNLYALDAKT---GKVLWRFDLP-G------------PISGA--PVV-DGGRVYVGTSDG-SLYA 90 (238)
T ss_dssp EEEETTEEEEEE-TTSEEEEEETTT---SEEEEEEECS-S------------CGGSG--EEE-ETTEEEEEETTS-EEEE
T ss_pred EEEeCCEEEEEc-CCCEEEEEECCC---CCEEEEeecc-c------------cccce--eee-ccccccccccee-eeEe
Confidence 554567899985 678999999742 4443222111 0 01111 233 367799988544 9999
Q ss_pred Ec-CCCcEEE
Q 013321 107 IS-DTGVTTI 115 (445)
Q Consensus 107 fd-~dGv~ti 115 (445)
+| .+|....
T Consensus 91 ~d~~tG~~~W 100 (238)
T PF13360_consen 91 LDAKTGKVLW 100 (238)
T ss_dssp EETTTSCEEE
T ss_pred cccCCcceee
Confidence 99 7784433
No 92
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=75.31 E-value=94 Score=36.29 Aligned_cols=85 Identities=21% Similarity=0.264 Sum_probs=48.0
Q ss_pred ceEEEEcCCCcEEEEeCCCCeEEEEeCCCC---C-----CCccEEEecCC---------CCc-------ccCCCCCccCc
Q 013321 23 PFSVAVSPSGELLVLDSENSNIYKISTSLS---P-----YSRPKLVAGSP---------EGY-------YGHVDGRPRGA 78 (445)
Q Consensus 23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~---~-----~G~v~~vaG~~---------~G~-------~G~~dG~~~~a 78 (445)
=..|+.+++|+..++-..++.|++++-... + .|....-++.. .+. .+..++ .-+
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~--iL~ 93 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDT--ILA 93 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccc--eee
Confidence 468999999984444445677777754321 0 12211111111 000 111111 235
Q ss_pred cCCCc-ceEEEcCCCCEEEEeCCCCEEEEEcC
Q 013321 79 RMNHP-KGLAVDDRGNIYIADTMNMAIRKISD 109 (445)
Q Consensus 79 ~Ln~P-~GIavD~dG~LYVAD~~N~rIrkfd~ 109 (445)
+|..| ..++|+.+|+..++=...-.|..++.
T Consensus 94 Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~ 125 (933)
T KOG1274|consen 94 RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNL 125 (933)
T ss_pred eeeccceEEEEecCCcEEEeecCceeEEEEec
Confidence 77788 48889989988887777777777773
No 93
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=74.92 E-value=1.3e+02 Score=32.58 Aligned_cols=129 Identities=15% Similarity=0.106 Sum_probs=76.5
Q ss_pred ecCCcEEEEEecCCCCCCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCc
Q 013321 4 FEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHP 83 (445)
Q Consensus 4 ~e~G~~v~tv~~Gs~~g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P 83 (445)
+.+|+.+..+-+. .....-+..++.|||.||.+.+.++.|..++... +. .++.- +|+ .| --
T Consensus 332 ~~~g~~lt~vs~~-~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks---~~--~~a~F----pgh-t~--------~v 392 (506)
T KOG0289|consen 332 ISSGSQLTVVSDE-TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS---QT--NVAKF----PGH-TG--------PV 392 (506)
T ss_pred ccCCcEEEEEeec-cccceeEEeeEcCCceEEeccCCCceEEEEEcCC---cc--ccccC----CCC-CC--------ce
Confidence 3556666666553 2334567889999999999999999998888752 11 12111 111 11 12
Q ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCe
Q 013321 84 KGLAVDDRGNIYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQA 160 (445)
Q Consensus 84 ~GIavD~dG~LYVAD~~N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~r 160 (445)
..|+|..+|.-.++-....+|+.+|-.- ..++.--. +..-..+ ..|..|..+++-...-+
T Consensus 393 k~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~----------------~~~v~s~-~fD~SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 393 KAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE----------------KKEVNSL-SFDQSGTYLGIAGSDLQ 455 (506)
T ss_pred eEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc----------------cccceeE-EEcCCCCeEEeecceeE
Confidence 4899999997666666666788888332 23332100 0011233 46778877777655556
Q ss_pred EEEEECCC
Q 013321 161 IREIQLHD 168 (445)
Q Consensus 161 Ir~i~l~~ 168 (445)
|+.+....
T Consensus 456 Vy~~~k~~ 463 (506)
T KOG0289|consen 456 VYICKKKT 463 (506)
T ss_pred EEEEeccc
Confidence 66666444
No 94
>PTZ00421 coronin; Provisional
Probab=73.86 E-value=1.4e+02 Score=32.56 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=43.5
Q ss_pred ceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCC----Cc-cEEEecCCCCcccCCCCCccCccCCCcceEEEcCCC-CEE
Q 013321 23 PFSVAVSP-SGELLVLDSENSNIYKISTSLSPY----SR-PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG-NIY 95 (445)
Q Consensus 23 P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~----G~-v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG-~LY 95 (445)
-.+|+++| +++++++-+.++.|..++...... .. +..+. |+ -..-..|++.+++ +++
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~-------gH---------~~~V~~l~f~P~~~~iL 141 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-------GH---------TKKVGIVSFHPSAMNVL 141 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec-------CC---------CCcEEEEEeCcCCCCEE
Confidence 46899998 788888888888888887642100 00 11111 11 0123478888765 566
Q ss_pred EEeCCCCEEEEEcCC
Q 013321 96 IADTMNMAIRKISDT 110 (445)
Q Consensus 96 VAD~~N~rIrkfd~d 110 (445)
++=...+.|+..|..
T Consensus 142 aSgs~DgtVrIWDl~ 156 (493)
T PTZ00421 142 ASAGADMVVNVWDVE 156 (493)
T ss_pred EEEeCCCEEEEEECC
Confidence 655557778888843
No 95
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=73.49 E-value=5.3 Score=42.95 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=30.4
Q ss_pred ccCCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC
Q 013321 78 ARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG 111 (445)
Q Consensus 78 a~Ln~P~GIavD~dG~LYVAD~~N~rIrkfd~dG 111 (445)
..|..|.||.+|.||..|+.|...+.+.+.+..+
T Consensus 464 ~~fylphgl~~dkdgf~~~tdvash~v~k~k~~~ 497 (501)
T KOG3567|consen 464 NLFYLPHGLSIDKDGFYWVTDVASHQVFKLKPNN 497 (501)
T ss_pred CceecCCcceecCCCcEEeecccchhhhhccccc
Confidence 3699999999999999999999999998887654
No 96
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=73.44 E-value=1.1e+02 Score=32.93 Aligned_cols=86 Identities=16% Similarity=0.112 Sum_probs=42.2
Q ss_pred cceEEEcCCCCEEEEeC-------------CCCEEEEEcCCCcEEEe--cCcccCCCCC--------CCCCccCcc--cC
Q 013321 83 PKGLAVDDRGNIYIADT-------------MNMAIRKISDTGVTTIA--GGKWSRGVGH--------VDGPSEDAK--FS 137 (445)
Q Consensus 83 P~GIavD~dG~LYVAD~-------------~N~rIrkfd~dGv~tia--Gg~~G~g~G~--------~dgp~~~a~--f~ 137 (445)
=+++...++|++++.-. ....|..+|.+|..+.. ....--.... .+....... -.
T Consensus 192 HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~ 271 (477)
T PF05935_consen 192 HHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWL 271 (477)
T ss_dssp -S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS-
T ss_pred ccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCcc
Confidence 35888999999554322 25679999988833332 2111000000 000000011 12
Q ss_pred CCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321 138 NDFDVVYVGSSCSLLVIDRGNQAIREIQLHD 168 (445)
Q Consensus 138 ~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~ 168 (445)
.-++|.++..+++|+|.-+....|++|+...
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t 302 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRT 302 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TT
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCC
Confidence 3467777677899999999999999999544
No 97
>smart00284 OLF Olfactomedin-like domains.
Probab=72.98 E-value=64 Score=32.33 Aligned_cols=76 Identities=18% Similarity=0.162 Sum_probs=40.6
Q ss_pred CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC--EEEEeCC--CCEEEE
Q 013321 31 SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN--IYIADTM--NMAIRK 106 (445)
Q Consensus 31 dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~--LYVAD~~--N~rIrk 106 (445)
+|.||..-..+..|.|++... +.+....--+ ..++.+-..-...-..=.++|+|.+|. ||-+... +-.|.|
T Consensus 83 ngslYY~~~~s~~iiKydL~t---~~v~~~~~Lp--~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSk 157 (255)
T smart00284 83 NGSLYFNKFNSHDICRFDLTT---ETYQKEPLLN--GAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISK 157 (255)
T ss_pred CceEEEEecCCccEEEEECCC---CcEEEEEecC--ccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEe
Confidence 578999888888999999874 2332111111 001100000000001224899999884 4444443 344569
Q ss_pred EcCCC
Q 013321 107 ISDTG 111 (445)
Q Consensus 107 fd~dG 111 (445)
+|+..
T Consensus 158 Lnp~t 162 (255)
T smart00284 158 LNPAT 162 (255)
T ss_pred eCccc
Confidence 99766
No 98
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=72.39 E-value=11 Score=37.20 Aligned_cols=62 Identities=19% Similarity=0.173 Sum_probs=40.2
Q ss_pred CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCC-CEEEEe
Q 013321 31 SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG-NIYIAD 98 (445)
Q Consensus 31 dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG-~LYVAD 98 (445)
+|+||.--....+|.|++++. |++...+... +..- .-.......+-++|||.++++ .+|++-
T Consensus 185 dG~lyANVw~t~~I~rI~p~s---GrV~~widlS-~L~~--~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDS---GRVVAWIDLS-GLLK--ELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccEEEEeeeeecceEEEcCCC---CcEEEEEEcc-CCch--hcCccccccccccceeecCcCCeEEEec
Confidence 567777667778999999984 7776655432 1111 001122346789999999977 487764
No 99
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=71.33 E-value=71 Score=34.03 Aligned_cols=69 Identities=23% Similarity=0.258 Sum_probs=53.2
Q ss_pred ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCC
Q 013321 23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM 102 (445)
Q Consensus 23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~ 102 (445)
-..++++|+|...++.++...++..|.++. .+.-. +.|+ -+.-..|+..|||....+-..++
T Consensus 118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te---Tp~~t------~KgH---------~~WVlcvawsPDgk~iASG~~dg 179 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTE---TPLFT------CKGH---------KNWVLCVAWSPDGKKIASGSKDG 179 (480)
T ss_pred EEEEEecCCCceEEecCCCceEEeeccCCC---Cccee------ecCC---------ccEEEEEEECCCcchhhccccCC
Confidence 357889999999999999999999988742 22221 1222 34566899999999999999999
Q ss_pred EEEEEcC
Q 013321 103 AIRKISD 109 (445)
Q Consensus 103 rIrkfd~ 109 (445)
.|+..|+
T Consensus 180 ~I~lwdp 186 (480)
T KOG0271|consen 180 SIRLWDP 186 (480)
T ss_pred eEEEecC
Confidence 9999994
No 100
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=71.28 E-value=58 Score=37.33 Aligned_cols=77 Identities=25% Similarity=0.401 Sum_probs=54.8
Q ss_pred CCceEEEEcCCCcEEEEeCCC-CeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCc-ceEEEcCCCCEEEEe
Q 013321 21 MEPFSVAVSPSGELLVLDSEN-SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHP-KGLAVDDRGNIYIAD 98 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n-~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P-~GIavD~dG~LYVAD 98 (445)
.+=..|||||.|+|.++...+ -.|.+++..+ |+...+..+.+ .| .+|++++.|.+.++=
T Consensus 436 ~QfscvavD~sGelV~AG~~d~F~IfvWS~qT---GqllDiLsGHE----------------gPVs~l~f~~~~~~LaS~ 496 (893)
T KOG0291|consen 436 IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT---GQLLDILSGHE----------------GPVSGLSFSPDGSLLASG 496 (893)
T ss_pred eeeeEEEEcCCCCEEEeeccceEEEEEEEeec---CeeeehhcCCC----------------CcceeeEEccccCeEEec
Confidence 355789999999998887655 4688888763 66555443321 23 389999999999988
Q ss_pred CCCCEEEEEc---CCC-cEEEe
Q 013321 99 TMNMAIRKIS---DTG-VTTIA 116 (445)
Q Consensus 99 ~~N~rIrkfd---~dG-v~tia 116 (445)
+....||..| ..| +.++.
T Consensus 497 SWDkTVRiW~if~s~~~vEtl~ 518 (893)
T KOG0291|consen 497 SWDKTVRIWDIFSSSGTVETLE 518 (893)
T ss_pred cccceEEEEEeeccCceeeeEe
Confidence 8888888665 444 55553
No 101
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=70.59 E-value=15 Score=25.01 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=25.4
Q ss_pred CCCeEEEEECCCCeEEEEECCCCcee-ecCCCCccceEEE
Q 013321 147 SSCSLLVIDRGNQAIREIQLHDDDCS-DNYDDTFHLGIFV 185 (445)
Q Consensus 147 ~dG~LyVaD~gn~rIr~i~l~~~~~~-~~~~~g~P~gIav 185 (445)
....|||++.+.+.|..|++...... ...-...|.++++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 34579999999999999997654332 2222345666553
No 102
>PRK04792 tolB translocation protein TolB; Provisional
Probab=69.60 E-value=1.6e+02 Score=31.35 Aligned_cols=27 Identities=7% Similarity=0.167 Sum_probs=16.8
Q ss_pred ceEEEcCCCC-E-EEEeC-CCCEEEEEcCC
Q 013321 84 KGLAVDDRGN-I-YIADT-MNMAIRKISDT 110 (445)
Q Consensus 84 ~GIavD~dG~-L-YVAD~-~N~rIrkfd~d 110 (445)
...++.+||. | |++|. ++..|.++|.+
T Consensus 309 ~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~ 338 (448)
T PRK04792 309 TEPSWHPDGKSLIFTSERGGKPQIYRVNLA 338 (448)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 3456778876 3 44553 35678888854
No 103
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=69.50 E-value=17 Score=24.80 Aligned_cols=20 Identities=10% Similarity=0.313 Sum_probs=17.1
Q ss_pred CCEEEEeCCCCEEEEEcCCC
Q 013321 92 GNIYIADTMNMAIRKISDTG 111 (445)
Q Consensus 92 G~LYVAD~~N~rIrkfd~dG 111 (445)
+.|||++...+.|..||...
T Consensus 4 ~~lyv~~~~~~~v~~id~~~ 23 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTAT 23 (42)
T ss_pred CEEEEEeCCCCEEEEEECCC
Confidence 34999999999999999654
No 104
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=68.91 E-value=82 Score=34.03 Aligned_cols=84 Identities=21% Similarity=0.296 Sum_probs=44.0
Q ss_pred eEEEEcCCCcEEEEeC-------------CCCeEEEEeCCCCCCCccEEEecCCCCc----c--------cCCCCCccCc
Q 013321 24 FSVAVSPSGELLVLDS-------------ENSNIYKISTSLSPYSRPKLVAGSPEGY----Y--------GHVDGRPRGA 78 (445)
Q Consensus 24 ~gIAVdpdG~LYVaDs-------------~n~rI~kid~dg~~~G~v~~vaG~~~G~----~--------G~~dG~~~~a 78 (445)
+++...++|+++++-. -...|+.++.+ |++........-. . +...+.....
T Consensus 193 HD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~t----G~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~ 268 (477)
T PF05935_consen 193 HDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPT----GEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR 268 (477)
T ss_dssp S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TT----S-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred cccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCC----CCEEEEEehHHhCCcccccccccccccccccCCCCC
Confidence 7888889998665443 13578888855 5555443211000 0 0111111122
Q ss_pred cCCCcceEEEcC-CCCEEEEeCCCCEEEEEc-CCC
Q 013321 79 RMNHPKGLAVDD-RGNIYIADTMNMAIRKIS-DTG 111 (445)
Q Consensus 79 ~Ln~P~GIavD~-dG~LYVAD~~N~rIrkfd-~dG 111 (445)
.--|-++|..|+ ++.|+|+=...+.|.+|| .++
T Consensus 269 DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~ 303 (477)
T PF05935_consen 269 DWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTG 303 (477)
T ss_dssp BS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred CccccCccEEeCCCCeEEEEcCcceEEEEEECCCC
Confidence 234667999998 667888888788999999 566
No 105
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.25 E-value=62 Score=34.35 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=51.5
Q ss_pred CCceEEEEcCC--CcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCc-ceEEEcCCCC-EEE
Q 013321 21 MEPFSVAVSPS--GELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHP-KGLAVDDRGN-IYI 96 (445)
Q Consensus 21 ~~P~gIAVdpd--G~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P-~GIavD~dG~-LYV 96 (445)
.++.+|.+-+. ..-|++-+..|.|+.+|..-. .++..-.. -+.+| ..++.++.|+ ||+
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q--RRPV~~fd----------------~~E~~is~~~l~p~gn~Iy~ 264 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ--RRPVAQFD----------------FLENPISSTGLTPSGNFIYT 264 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCccc--CcceeEec----------------cccCcceeeeecCCCcEEEE
Confidence 67788888774 568888888899999987521 11111110 12334 4788889998 899
Q ss_pred EeCCCCEEEEEcCCCcEEE
Q 013321 97 ADTMNMAIRKISDTGVTTI 115 (445)
Q Consensus 97 AD~~N~rIrkfd~dGv~ti 115 (445)
+|+ ...+..||..+..++
T Consensus 265 gn~-~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 265 GNT-KGQLAKFDLRGGKLL 282 (412)
T ss_pred ecc-cchhheecccCceee
Confidence 997 467999997764443
No 106
>PRK02889 tolB translocation protein TolB; Provisional
Probab=67.78 E-value=1.7e+02 Score=30.85 Aligned_cols=68 Identities=24% Similarity=0.268 Sum_probs=38.3
Q ss_pred EEEEcCCCc-EEE-EeC-CCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEE-Ee-
Q 013321 25 SVAVSPSGE-LLV-LDS-ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYI-AD- 98 (445)
Q Consensus 25 gIAVdpdG~-LYV-aDs-~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYV-AD- 98 (445)
..+++|||+ |++ ++. ++..|+.++..+ |+...+.... | .-...++.+||. |++ ++
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~---g~~~~l~~~~----g------------~~~~~~~SPDG~~la~~~~~ 260 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLAT---GRRRVVANFK----G------------SNSAPAWSPDGRTLAVALSR 260 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCC---CCEEEeecCC----C------------CccceEECCCCCEEEEEEcc
Confidence 568888886 433 332 345688888763 4444443221 1 112567788886 443 23
Q ss_pred CCCCEEEEEcCCC
Q 013321 99 TMNMAIRKISDTG 111 (445)
Q Consensus 99 ~~N~rIrkfd~dG 111 (445)
.++.+|..+|.++
T Consensus 261 ~g~~~Iy~~d~~~ 273 (427)
T PRK02889 261 DGNSQIYTVNADG 273 (427)
T ss_pred CCCceEEEEECCC
Confidence 3456788887554
No 107
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=66.99 E-value=1e+02 Score=31.37 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=18.7
Q ss_pred eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE
Q 013321 85 GLAVDDRGNIYIADTMNMAIRKISD-TGVTT 114 (445)
Q Consensus 85 GIavD~dG~LYVAD~~N~rIrkfd~-dGv~t 114 (445)
..+++ ++.|||++ .+++|..+|. +|...
T Consensus 274 ~p~~~-~~~vyv~~-~~G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 274 GPAVD-DNRLYVTD-ADGVVVALDRRSGSEL 302 (377)
T ss_pred CceEe-CCEEEEEC-CCCeEEEEECCCCcEE
Confidence 34454 57799987 4678999985 45433
No 108
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=66.48 E-value=74 Score=33.28 Aligned_cols=109 Identities=15% Similarity=0.213 Sum_probs=56.2
Q ss_pred cEEEEeC----CCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeCC-------
Q 013321 33 ELLVLDS----ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTM------- 100 (445)
Q Consensus 33 ~LYVaDs----~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~------- 100 (445)
++||.|. ..+||+.+|.+. +++.-.+-. | |. | .++++++|. +|+|++.
T Consensus 4 rvyV~D~~~~~~~~rv~viD~d~---~k~lGmi~~--g-------------~~-~-~~~~spdgk~~y~a~T~~sR~~rG 63 (342)
T PF06433_consen 4 RVYVQDPVFFHMTSRVYVIDADS---GKLLGMIDT--G-------------FL-G-NVALSPDGKTIYVAETFYSRGTRG 63 (342)
T ss_dssp EEEEEE-GGGGSSEEEEEEETTT---TEEEEEEEE--E-------------SS-E-EEEE-TTSSEEEEEEEEEEETTEE
T ss_pred EEEEECCccccccceEEEEECCC---CcEEEEeec--c-------------cC-C-ceeECCCCCEEEEEEEEEeccccc
Confidence 6888886 246888888762 333221111 1 11 2 367788887 9999985
Q ss_pred --CCEEEEEcCCCcEEEecCcccCCCCCCCCCcc--CcccCCCceEEEECCCCeEEEEEC-CCCeEEEEECCCCc
Q 013321 101 --NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSE--DAKFSNDFDVVYVGSSCSLLVIDR-GNQAIREIQLHDDD 170 (445)
Q Consensus 101 --N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~--~a~f~~P~gI~~vd~dG~LyVaD~-gn~rIr~i~l~~~~ 170 (445)
..-|..+|........- ...|.. ...+..++.+.+.+.+..+||.+. -...|-++++....
T Consensus 64 ~RtDvv~~~D~~TL~~~~E---------I~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k 129 (342)
T PF06433_consen 64 ERTDVVEIWDTQTLSPTGE---------IEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKK 129 (342)
T ss_dssp EEEEEEEEEETTTTEEEEE---------EEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTE
T ss_pred cceeEEEEEecCcCcccce---------EecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCc
Confidence 23467788766332210 001111 112345555554455557777774 35667777766543
No 109
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=65.98 E-value=89 Score=32.27 Aligned_cols=60 Identities=23% Similarity=0.344 Sum_probs=36.0
Q ss_pred CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCCEEEEEcC-
Q 013321 31 SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD- 109 (445)
Q Consensus 31 dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~rIrkfd~- 109 (445)
+|.||+++. ++.++.++... |+...-.. +..+..++++ +|.|||++. ++.|..+|.
T Consensus 256 ~~~vy~~~~-~g~l~ald~~t---G~~~W~~~-----------------~~~~~~~~~~-~~~vy~~~~-~g~l~ald~~ 312 (394)
T PRK11138 256 GGVVYALAY-NGNLVALDLRS---GQIVWKRE-----------------YGSVNDFAVD-GGRIYLVDQ-NDRVYALDTR 312 (394)
T ss_pred CCEEEEEEc-CCeEEEEECCC---CCEEEeec-----------------CCCccCcEEE-CCEEEEEcC-CCeEEEEECC
Confidence 567888774 57888888762 43322110 1112234454 578999875 578999985
Q ss_pred CCcE
Q 013321 110 TGVT 113 (445)
Q Consensus 110 dGv~ 113 (445)
+|..
T Consensus 313 tG~~ 316 (394)
T PRK11138 313 GGVE 316 (394)
T ss_pred CCcE
Confidence 4543
No 110
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=65.81 E-value=42 Score=35.30 Aligned_cols=125 Identities=18% Similarity=0.222 Sum_probs=72.3
Q ss_pred EEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCC---------CCc--ccCCCCCccCccCCCcceEE------
Q 013321 26 VAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSP---------EGY--YGHVDGRPRGARMNHPKGLA------ 87 (445)
Q Consensus 26 IAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v-~~vaG~~---------~G~--~G~~dG~~~~a~Ln~P~GIa------ 87 (445)
++.+-+..+.|+.+..+.|++++-+. |++ .++++-- +|+ .-..|-.++...|..|..++
T Consensus 241 LCLqyd~rviisGSSDsTvrvWDv~t---ge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLv 317 (499)
T KOG0281|consen 241 LCLQYDERVIVSGSSDSTVRVWDVNT---GEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLV 317 (499)
T ss_pred EeeeccceEEEecCCCceEEEEeccC---CchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHh
Confidence 34444556777777777888777653 221 1111110 011 11224444445566665443
Q ss_pred --------EcCCCCEEEEeCCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEEC
Q 013321 88 --------VDDRGNIYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR 156 (445)
Q Consensus 88 --------vD~dG~LYVAD~~N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~ 156 (445)
||-+..+.|+-++...|+..+.+. +.++.|-. -||+|.--.|.|.|...
T Consensus 318 GHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHk--------------------RGIAClQYr~rlvVSGS 377 (499)
T KOG0281|consen 318 GHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHK--------------------RGIACLQYRDRLVVSGS 377 (499)
T ss_pred hhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhccc--------------------ccceehhccCeEEEecC
Confidence 222344666666677777777543 44554432 23466667889999999
Q ss_pred CCCeEEEEECCCCceee
Q 013321 157 GNQAIREIQLHDDDCSD 173 (445)
Q Consensus 157 gn~rIr~i~l~~~~~~~ 173 (445)
..+.||.++.+.+.|..
T Consensus 378 SDntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 378 SDNTIRLWDIECGACLR 394 (499)
T ss_pred CCceEEEEeccccHHHH
Confidence 99999999988776654
No 111
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=65.62 E-value=50 Score=32.64 Aligned_cols=111 Identities=23% Similarity=0.376 Sum_probs=53.0
Q ss_pred eEEEEcCCCcEEEEeCCCCeEEEEeCCCC---CCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321 24 FSVAVSPSGELLVLDSENSNIYKISTSLS---PYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 100 (445)
Q Consensus 24 ~gIAVdpdG~LYVaDs~n~rI~kid~dg~---~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~ 100 (445)
.-|+..|+|.||+.. ++.+++.++... ..-.....+|.. +. ..|. .|++|++|.||..+.
T Consensus 37 ~~i~~~P~g~lY~I~--~~~lY~~~~~~~~~~~~~~~~~~Ig~g----~W-------~~F~---~i~~d~~G~LYaV~~- 99 (229)
T PF14517_consen 37 RDIAAGPNGRLYAIR--NDGLYRGSPSSSGGNTWDSGSKQIGDG----GW-------NSFK---FIFFDPTGVLYAVTP- 99 (229)
T ss_dssp SEEEE-TTS-EEEEE--TTEEEEES---STT--HHHH-EEEE-S-----G-------GG-S---EEEE-TTS-EEEEET-
T ss_pred ceEEEcCCceEEEEE--CCceEEecCCccCcccccccCcccccC----cc-------ccee---EEEecCCccEEEecc-
Confidence 468888999999998 458888743210 000111112211 00 1243 899999999998876
Q ss_pred CCEEEEEcC--CCcEEEec---CcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEE
Q 013321 101 NMAIRKISD--TGVTTIAG---GKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 164 (445)
Q Consensus 101 N~rIrkfd~--dGv~tiaG---g~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i 164 (445)
+..|.+... ++-...++ ...|. .|+ ..+..++.+++|.||+++..+ ++.+.
T Consensus 100 ~G~lyR~~~~~~~~~~W~~~~~~~iG~-~GW-----------~~f~~vfa~~~GvLY~i~~dg-~~~~~ 155 (229)
T PF14517_consen 100 DGKLYRHPRPTNGSDNWIGGSGKKIGG-TGW-----------NDFDAVFAGPNGVLYAITPDG-RLYRR 155 (229)
T ss_dssp T-EEEEES---STT--HHH-HSEEEE--SSG-----------GGEEEEEE-TTS-EEEEETTE--EEEE
T ss_pred ccceeeccCCCccCcchhhccceeccc-CCC-----------ccceEEEeCCCccEEEEcCCC-ceEEe
Confidence 466766652 22111111 11100 111 113345679999999999755 66666
No 112
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=65.39 E-value=45 Score=30.94 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=19.7
Q ss_pred EEcCCCCEEEEeCCCCEEEEEcC-CCc
Q 013321 87 AVDDRGNIYIADTMNMAIRKISD-TGV 112 (445)
Q Consensus 87 avD~dG~LYVAD~~N~rIrkfd~-dGv 112 (445)
++..+|.||+++ .++.|..+|. +|.
T Consensus 32 ~~~~~~~v~~~~-~~~~l~~~d~~tG~ 57 (238)
T PF13360_consen 32 AVPDGGRVYVAS-GDGNLYALDAKTGK 57 (238)
T ss_dssp EEEETTEEEEEE-TTSEEEEEETTTSE
T ss_pred EEEeCCEEEEEc-CCCEEEEEECCCCC
Confidence 565678899996 5789999995 783
No 113
>PRK03629 tolB translocation protein TolB; Provisional
Probab=64.63 E-value=1.9e+02 Score=30.46 Aligned_cols=69 Identities=25% Similarity=0.229 Sum_probs=37.9
Q ss_pred eEEEEcCCCc-E-EEEe-CCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEE-e
Q 013321 24 FSVAVSPSGE-L-LVLD-SENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA-D 98 (445)
Q Consensus 24 ~gIAVdpdG~-L-YVaD-s~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA-D 98 (445)
...+++|||. | |++. .+...|+.++..+ |+...+.... + .-..+++.+||. |+++ +
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~---G~~~~l~~~~----~------------~~~~~~~SPDG~~La~~~~ 262 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLAN---GAVRQVASFP----R------------HNGAPAFSPDGSKLAFALS 262 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCC---CCeEEccCCC----C------------CcCCeEECCCCCEEEEEEc
Confidence 4678888876 3 3333 2345677777653 3333332211 0 112467888887 5544 3
Q ss_pred -CCCCEEEEEcCCC
Q 013321 99 -TMNMAIRKISDTG 111 (445)
Q Consensus 99 -~~N~rIrkfd~dG 111 (445)
.++..|..+|.++
T Consensus 263 ~~g~~~I~~~d~~t 276 (429)
T PRK03629 263 KTGSLNLYVMDLAS 276 (429)
T ss_pred CCCCcEEEEEECCC
Confidence 2345788888654
No 114
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=63.81 E-value=1.8e+02 Score=31.41 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=72.4
Q ss_pred CCceEEEEcCCCcEEEEeCCC--CeEEEEeCCCCCCCc-cEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEE
Q 013321 21 MEPFSVAVSPSGELLVLDSEN--SNIYKISTSLSPYSR-PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIA 97 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n--~rI~kid~dg~~~G~-v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVA 97 (445)
..-++|++.+||.|.++.... +||+-+.. |+ +..++|- +..-.+|+++|+|....+
T Consensus 304 ~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt-----gr~im~L~gH----------------~k~I~~V~fsPNGy~lAT 362 (459)
T KOG0272|consen 304 KGVFSIAFQPDGSLAATGGLDSLGRVWDLRT-----GRCIMFLAGH----------------IKEILSVAFSPNGYHLAT 362 (459)
T ss_pred cccceeEecCCCceeeccCccchhheeeccc-----CcEEEEeccc----------------ccceeeEeECCCceEEee
Confidence 456899999999998876544 44443332 44 3444442 334469999999988887
Q ss_pred eCCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 013321 98 DTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC 171 (445)
Q Consensus 98 D~~N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~ 171 (445)
-...+.+++.|-.+ +.++.+-. +--+.|.+....|..+|+-...+.+...+..+..+
T Consensus 363 gs~Dnt~kVWDLR~r~~ly~ipAH~-----------------nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~ 422 (459)
T KOG0272|consen 363 GSSDNTCKVWDLRMRSELYTIPAHS-----------------NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP 422 (459)
T ss_pred cCCCCcEEEeeecccccceeccccc-----------------chhhheEecccCCeEEEEcccCcceeeecCCCccc
Confidence 77777777777444 55553311 12234445445778888888888888888665443
No 115
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=63.42 E-value=1.3e+02 Score=32.17 Aligned_cols=116 Identities=15% Similarity=0.243 Sum_probs=66.2
Q ss_pred ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCC
Q 013321 23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM 102 (445)
Q Consensus 23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~ 102 (445)
-+.+.++.||.++++-....+|+++++.. |++.... .+..| . .|.-+.+-.+|.|+.+-....
T Consensus 176 i~S~sfn~dGs~l~TtckDKkvRv~dpr~---~~~v~e~---~~heG----------~-k~~Raifl~~g~i~tTGfsr~ 238 (472)
T KOG0303|consen 176 VYSMSFNRDGSLLCTTCKDKKVRVIDPRR---GTVVSEG---VAHEG----------A-KPARAIFLASGKIFTTGFSRM 238 (472)
T ss_pred EEEEEeccCCceeeeecccceeEEEcCCC---CcEeeec---ccccC----------C-CcceeEEeccCceeeeccccc
Confidence 47888989999999988889999999862 3333222 12222 1 344444445777665544322
Q ss_pred ---EEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEE---EECCCCeEEEEECCCCeEEEEECCCCc
Q 013321 103 ---AIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVV---YVGSSCSLLVIDRGNQAIREIQLHDDD 170 (445)
Q Consensus 103 ---rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~---~vd~dG~LyVaD~gn~rIr~i~l~~~~ 170 (445)
.|-..|.+.+.. |.....+..-+|++ +++..+-||++-.|...||-|....+.
T Consensus 239 seRq~aLwdp~nl~e---------------P~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 239 SERQIALWDPNNLEE---------------PIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cccceeccCcccccC---------------cceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 233333332111 00011111122221 456667889999999999999876544
No 116
>PRK05137 tolB translocation protein TolB; Provisional
Probab=63.23 E-value=2e+02 Score=30.18 Aligned_cols=27 Identities=11% Similarity=0.249 Sum_probs=16.5
Q ss_pred eEEEcCCCC--EEEEeC-CCCEEEEEcCCC
Q 013321 85 GLAVDDRGN--IYIADT-MNMAIRKISDTG 111 (445)
Q Consensus 85 GIavD~dG~--LYVAD~-~N~rIrkfd~dG 111 (445)
..++.+||. +|++|. +...|.++|.++
T Consensus 294 ~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g 323 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRSGSPQLYVMNADG 323 (435)
T ss_pred ceeEcCCCCEEEEEECCCCCCeEEEEECCC
Confidence 456777876 344543 245788888655
No 117
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=62.69 E-value=1.2e+02 Score=30.83 Aligned_cols=67 Identities=13% Similarity=0.302 Sum_probs=37.7
Q ss_pred EEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCCEE
Q 013321 25 SVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAI 104 (445)
Q Consensus 25 gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~rI 104 (445)
+++++ ++.||+.+. ++.|+.++... |++..-...... + -.+++++ ++.|||++. ++.|
T Consensus 60 ~p~v~-~~~v~v~~~-~g~v~a~d~~t---G~~~W~~~~~~~-------------~--~~~p~v~-~~~v~v~~~-~g~l 117 (377)
T TIGR03300 60 QPAVA-GGKVYAADA-DGTVVALDAET---GKRLWRVDLDER-------------L--SGGVGAD-GGLVFVGTE-KGEV 117 (377)
T ss_pred ceEEE-CCEEEEECC-CCeEEEEEccC---CcEeeeecCCCC-------------c--ccceEEc-CCEEEEEcC-CCEE
Confidence 34454 567888764 57899998642 443322111100 0 0134454 567888764 5788
Q ss_pred EEEcC-CCcE
Q 013321 105 RKISD-TGVT 113 (445)
Q Consensus 105 rkfd~-dGv~ 113 (445)
..+|. +|..
T Consensus 118 ~ald~~tG~~ 127 (377)
T TIGR03300 118 IALDAEDGKE 127 (377)
T ss_pred EEEECCCCcE
Confidence 99985 5643
No 118
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=62.01 E-value=97 Score=33.69 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=32.7
Q ss_pred EEEcCCCCEEEEeCC-CCEEEEEcCCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEE
Q 013321 86 LAVDDRGNIYIADTM-NMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIRE 163 (445)
Q Consensus 86 IavD~dG~LYVAD~~-N~rIrkfd~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~ 163 (445)
++...+|.+||.|.. |.+++++-.+| +. | +. +|...+++++.+-+..+-|-.
T Consensus 360 ~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~-------g------------------ts-~~~S~ng~ylA~GS~~GiVNI 413 (514)
T KOG2055|consen 360 LASGGTGEVYVWNLRQNSCLHRFVDDGSVH-------G------------------TS-LCISLNGSYLATGSDSGIVNI 413 (514)
T ss_pred EEEcCCceEEEEecCCcceEEEEeecCccc-------e------------------ee-eeecCCCceEEeccCcceEEE
Confidence 334446666666665 55666665555 21 1 11 245677776666667777777
Q ss_pred EECC
Q 013321 164 IQLH 167 (445)
Q Consensus 164 i~l~ 167 (445)
++.+
T Consensus 414 Yd~~ 417 (514)
T KOG2055|consen 414 YDGN 417 (514)
T ss_pred eccc
Confidence 7744
No 119
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=61.37 E-value=76 Score=35.00 Aligned_cols=131 Identities=17% Similarity=0.210 Sum_probs=73.4
Q ss_pred CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321 21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 100 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~ 100 (445)
..|..-+++++|.++.+--.++.|+.++. ++..-++...++.. +.+| ..-+.|+|..+|++..+-..
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~-~~~~v~p~~~vk~A-----H~~g-------~~Itsi~FS~dg~~LlSRg~ 384 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDK-GSRTVRPVMKVKDA-----HLPG-------QDITSISFSYDGNYLLSRGF 384 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeec-CCcccccceEeeec-----cCCC-------CceeEEEeccccchhhhccC
Confidence 45777788888888777767888888875 33223333333322 1111 13458999999999998888
Q ss_pred CCEEEEEcCCC----cEEEecCcccCCCCCCCCCccCcccCCCceEEEE-------CCCCeEEEEECC-CCeEEEEECCC
Q 013321 101 NMAIRKISDTG----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV-------GSSCSLLVIDRG-NQAIREIQLHD 168 (445)
Q Consensus 101 N~rIrkfd~dG----v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~v-------d~dG~LyVaD~g-n~rIr~i~l~~ 168 (445)
...++..|-.. +.+..|-..- -+..+++|+-..-|++. ...|.|+|.|+- -.+|.+|+..+
T Consensus 385 D~tLKvWDLrq~kkpL~~~tgL~t~-------~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~ 457 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKKPLNVRTGLPTP-------FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIST 457 (641)
T ss_pred CCceeeeeccccccchhhhcCCCcc-------CCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCC
Confidence 77777777333 2222121110 12334444332222221 223568888864 36677777665
Q ss_pred Cce
Q 013321 169 DDC 171 (445)
Q Consensus 169 ~~~ 171 (445)
..|
T Consensus 458 aSv 460 (641)
T KOG0772|consen 458 ASV 460 (641)
T ss_pred ceE
Confidence 433
No 120
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=61.16 E-value=2.3e+02 Score=30.16 Aligned_cols=119 Identities=14% Similarity=0.161 Sum_probs=66.5
Q ss_pred cCCCcceEEEc---CCCCEEE-EeCCCCEEEEEc----CCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCC
Q 013321 79 RMNHPKGLAVD---DRGNIYI-ADTMNMAIRKIS----DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC 149 (445)
Q Consensus 79 ~Ln~P~GIavD---~dG~LYV-AD~~N~rIrkfd----~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG 149 (445)
.+..|.|+|+- .+|.+|+ +...++++.++- .+| +....-.... .-+.+-++++.+..+
T Consensus 154 ~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~-------------~~sQ~EGCVVDDe~g 220 (381)
T PF02333_consen 154 DLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK-------------VGSQPEGCVVDDETG 220 (381)
T ss_dssp SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--------------SS-EEEEEEETTTT
T ss_pred ccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec-------------CCCcceEEEEecccC
Confidence 46778999985 2566553 333456665443 334 2111000000 012466778888899
Q ss_pred eEEEEECCCCeEEEEECCCCcee------ecCCCC---ccceEEEEeccceEEEEEEeecCccceeeeccC
Q 013321 150 SLLVIDRGNQAIREIQLHDDDCS------DNYDDT---FHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKD 211 (445)
Q Consensus 150 ~LyVaD~gn~rIr~i~l~~~~~~------~~~~~g---~P~gIav~~~a~~vg~~~~ll~~~~g~~~~s~~ 211 (445)
.|||++-. .-||++..+..... ...+.+ -..||++.-+..--||+++..|..-.-.+|...
T Consensus 221 ~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~ 290 (381)
T PF02333_consen 221 RLYVGEED-VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDRE 290 (381)
T ss_dssp EEEEEETT-TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESS
T ss_pred CEEEecCc-cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecC
Confidence 99999985 79999998753221 111222 346777776555567888887776666666544
No 121
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=60.74 E-value=1.2e+02 Score=31.41 Aligned_cols=72 Identities=13% Similarity=0.222 Sum_probs=37.5
Q ss_pred CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCCEEEEEcC-
Q 013321 31 SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD- 109 (445)
Q Consensus 31 dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~rIrkfd~- 109 (445)
+|.||+++. ++.|+.++... |++..-.... +..+.... ...+.+ -.+++++ ++.|||.+. ++.|..+|.
T Consensus 69 ~~~vy~~~~-~g~l~ald~~t---G~~~W~~~~~-~~~~~~~~-~~~~~~--~~~~~v~-~~~v~v~~~-~g~l~ald~~ 138 (394)
T PRK11138 69 YNKVYAADR-AGLVKALDADT---GKEIWSVDLS-EKDGWFSK-NKSALL--SGGVTVA-GGKVYIGSE-KGQVYALNAE 138 (394)
T ss_pred CCEEEEECC-CCeEEEEECCC---CcEeeEEcCC-Cccccccc-cccccc--ccccEEE-CCEEEEEcC-CCEEEEEECC
Confidence 568888874 56888898752 4443322211 00000000 000001 1245555 578999874 567999995
Q ss_pred CCc
Q 013321 110 TGV 112 (445)
Q Consensus 110 dGv 112 (445)
+|.
T Consensus 139 tG~ 141 (394)
T PRK11138 139 DGE 141 (394)
T ss_pred CCC
Confidence 563
No 122
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=59.81 E-value=1.1e+02 Score=26.00 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=11.2
Q ss_pred cceEEEcCCCCEEEEeCC
Q 013321 83 PKGLAVDDRGNIYIADTM 100 (445)
Q Consensus 83 P~GIavD~dG~LYVAD~~ 100 (445)
+..+.+.++|+|.+-|..
T Consensus 87 ~~~~~L~ddGnlvl~~~~ 104 (114)
T smart00108 87 NYVLVLLDDGNLVIYDSD 104 (114)
T ss_pred ceEEEEeCCCCEEEECCC
Confidence 345666677776666653
No 123
>PRK03629 tolB translocation protein TolB; Provisional
Probab=57.74 E-value=2.5e+02 Score=29.57 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=37.8
Q ss_pred EEEEcCCCc-EEEE-e-CCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC--EEEEeC
Q 013321 25 SVAVSPSGE-LLVL-D-SENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN--IYIADT 99 (445)
Q Consensus 25 gIAVdpdG~-LYVa-D-s~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~--LYVAD~ 99 (445)
.++++|||. |+++ + .++.+|+.++.++ +.+..+.... ......++.++|. +|++|.
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~t---g~~~~lt~~~----------------~~~~~~~wSPDG~~I~f~s~~ 307 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLAS---GQIRQVTDGR----------------SNNTEPTWFPDSQNLAYTSDQ 307 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCC---CCEEEccCCC----------------CCcCceEECCCCCEEEEEeCC
Confidence 457777776 4443 2 2334677777653 3333332110 0123567888887 456665
Q ss_pred C-CCEEEEEcCCC
Q 013321 100 M-NMAIRKISDTG 111 (445)
Q Consensus 100 ~-N~rIrkfd~dG 111 (445)
. ..+|.+++.++
T Consensus 308 ~g~~~Iy~~d~~~ 320 (429)
T PRK03629 308 AGRPQVYKVNING 320 (429)
T ss_pred CCCceEEEEECCC
Confidence 3 45788888654
No 124
>PTZ00421 coronin; Provisional
Probab=55.87 E-value=3.1e+02 Score=29.96 Aligned_cols=70 Identities=13% Similarity=0.129 Sum_probs=45.5
Q ss_pred ceEEEEcCCC-cEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321 23 PFSVAVSPSG-ELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 101 (445)
Q Consensus 23 P~gIAVdpdG-~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N 101 (445)
...|++.|++ +++++-..++.|..++... +........ + -..-.+|++.++|.++++=..+
T Consensus 128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t---g~~~~~l~~------h---------~~~V~sla~spdG~lLatgs~D 189 (493)
T PTZ00421 128 VGIVSFHPSAMNVLASAGADMVVNVWDVER---GKAVEVIKC------H---------SDQITSLEWNLDGSLLCTTSKD 189 (493)
T ss_pred EEEEEeCcCCCCEEEEEeCCCEEEEEECCC---CeEEEEEcC------C---------CCceEEEEEECCCCEEEEecCC
Confidence 4567787754 5777666677777777652 222211111 0 1123588999999988887788
Q ss_pred CEEEEEcCC
Q 013321 102 MAIRKISDT 110 (445)
Q Consensus 102 ~rIrkfd~d 110 (445)
+.|+.+|..
T Consensus 190 g~IrIwD~r 198 (493)
T PTZ00421 190 KKLNIIDPR 198 (493)
T ss_pred CEEEEEECC
Confidence 999999953
No 125
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=54.94 E-value=1.5e+02 Score=32.76 Aligned_cols=80 Identities=14% Similarity=0.084 Sum_probs=54.1
Q ss_pred ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCC
Q 013321 23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM 102 (445)
Q Consensus 23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~ 102 (445)
-..+++||.|.-+++.+...-|..++..|--.. ..- ...+..+.-+.-+.+.+.+.|+.+++=+++.
T Consensus 170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas-~~~------------fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS-MRS------------FRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred EEEeeecCCCceeeeccccceEEEEeccccccc-chh------------hhccCcccccccceeeecCCCCeEEEEecCc
Confidence 467899999999999888888888887632100 000 1112222233345788888999888778899
Q ss_pred EEEEEcCCCcEEE
Q 013321 103 AIRKISDTGVTTI 115 (445)
Q Consensus 103 rIrkfd~dGv~ti 115 (445)
.++.+|.+|...+
T Consensus 237 qakl~DRdG~~~~ 249 (641)
T KOG0772|consen 237 QAKLLDRDGFEIV 249 (641)
T ss_pred ceeEEccCCceee
Confidence 9999999994433
No 126
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=54.88 E-value=71 Score=36.34 Aligned_cols=82 Identities=24% Similarity=0.283 Sum_probs=56.1
Q ss_pred CcEEEEEecCCCCCCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCc-cEEEecCCCCcccCCCCCccCccCCCcce
Q 013321 7 GYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSR-PKLVAGSPEGYYGHVDGRPRGARMNHPKG 85 (445)
Q Consensus 7 G~~v~tv~~Gs~~g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~-v~~vaG~~~G~~G~~dG~~~~a~Ln~P~G 85 (445)
|..+.. |.|... --..|+++|+|...++-...++|..+|..+ |+ +..+.|. .| .-..
T Consensus 567 G~~VRi-F~GH~~--~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~---~~~v~~l~~H----t~------------ti~S 624 (707)
T KOG0263|consen 567 GNSVRI-FTGHKG--PVTALAFSPCGRYLASGDEDGLIKIWDLAN---GSLVKQLKGH----TG------------TIYS 624 (707)
T ss_pred CcEEEE-ecCCCC--ceEEEEEcCCCceEeecccCCcEEEEEcCC---Ccchhhhhcc----cC------------ceeE
Confidence 444444 344333 347899999998888888888999888753 22 2222221 11 2237
Q ss_pred EEEcCCCCEEEEeCCCCEEEEEcCC
Q 013321 86 LAVDDRGNIYIADTMNMAIRKISDT 110 (445)
Q Consensus 86 IavD~dG~LYVAD~~N~rIrkfd~d 110 (445)
|.+..+|+++|++.+++.|+..|-.
T Consensus 625 lsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 625 LSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred EEEecCCCEEEecCCCCeEEEEEch
Confidence 8889999999999999999999843
No 127
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=54.73 E-value=2.4e+02 Score=32.37 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=64.8
Q ss_pred EEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCCEEE
Q 013321 26 VAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIR 105 (445)
Q Consensus 26 IAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~rIr 105 (445)
++++++|.+.++- ++++|..++..+ ++...-.+.. .....-+.+++++|+...++=..+.-|+
T Consensus 25 ~~~s~nG~~L~t~-~~d~Vi~idv~t---~~~~l~s~~~-------------ed~d~ita~~l~~d~~~L~~a~rs~llr 87 (775)
T KOG0319|consen 25 VAWSSNGQHLYTA-CGDRVIIIDVAT---GSIALPSGSN-------------EDEDEITALALTPDEEVLVTASRSQLLR 87 (775)
T ss_pred eeECCCCCEEEEe-cCceEEEEEccC---CceecccCCc-------------cchhhhheeeecCCccEEEEeeccceEE
Confidence 8999999966554 467888887653 3333222211 1244556899999988666656677777
Q ss_pred EEc-CCCc--EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee
Q 013321 106 KIS-DTGV--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS 172 (445)
Q Consensus 106 kfd-~dGv--~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~ 172 (445)
.++ +.|. ..+.. .-..|.-++.+++.+.|+-.-.-.++|+..+.....|+
T Consensus 88 v~~L~tgk~irswKa-----------------~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 88 VWSLPTGKLIRSWKA-----------------IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred EEEcccchHhHhHhh-----------------ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEE
Confidence 777 3442 22211 11234444455565544444444566666666665554
No 128
>PTZ00420 coronin; Provisional
Probab=54.39 E-value=3.5e+02 Score=30.22 Aligned_cols=71 Identities=8% Similarity=0.049 Sum_probs=47.2
Q ss_pred CceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321 22 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 100 (445)
Q Consensus 22 ~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~ 100 (445)
.-..|+++|++. ++++-..++.|..++... ++....... -.....|+++++|.++++-..
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t---g~~~~~i~~----------------~~~V~SlswspdG~lLat~s~ 187 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIEN---EKRAFQINM----------------PKKLSSLKWNIKGNLLSGTCV 187 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCC---CcEEEEEec----------------CCcEEEEEECCCCCEEEEEec
Confidence 346788888776 445656678888888752 222111110 012468999999999988777
Q ss_pred CCEEEEEcCCC
Q 013321 101 NMAIRKISDTG 111 (445)
Q Consensus 101 N~rIrkfd~dG 111 (445)
.+.|+.+|...
T Consensus 188 D~~IrIwD~Rs 198 (568)
T PTZ00420 188 GKHMHIIDPRK 198 (568)
T ss_pred CCEEEEEECCC
Confidence 78899999543
No 129
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=53.32 E-value=1.7e+02 Score=31.58 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=74.1
Q ss_pred CCCCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEE
Q 013321 19 FGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA 97 (445)
Q Consensus 19 ~g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA 97 (445)
.+.++...|..|||.=+|+.+....|...+.+|...+....+ +...-.+|++.+||. ++..
T Consensus 311 ~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gv------------------r~~~v~dlait~Dgk~vl~v 372 (519)
T KOG0293|consen 311 LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGV------------------RDPKVHDLAITYDGKYVLLV 372 (519)
T ss_pred cCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccc------------------ccceeEEEEEcCCCcEEEEE
Confidence 356788889999999899988888899999885432111111 112335999999998 4444
Q ss_pred eCCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321 98 DTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD 168 (445)
Q Consensus 98 D~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~ 168 (445)
+ ...+|+.++.....-+ + ......|..-..+..++.+.+++-.++.|+..++..
T Consensus 373 ~-~d~~i~l~~~e~~~dr--~--------------lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 373 T-VDKKIRLYNREARVDR--G--------------LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEE 426 (519)
T ss_pred e-cccceeeechhhhhhh--c--------------cccccCceeEEEEcCCCcEEEEEcccCeeEEeecch
Confidence 4 4567888874331110 0 000112222235788899999999899998888874
No 130
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=52.56 E-value=1.5e+02 Score=25.30 Aligned_cols=16 Identities=31% Similarity=0.414 Sum_probs=8.2
Q ss_pred ceEEEcCCCCEEEEeC
Q 013321 84 KGLAVDDRGNIYIADT 99 (445)
Q Consensus 84 ~GIavD~dG~LYVAD~ 99 (445)
..+.+.++|+|.+-|.
T Consensus 89 ~~~~L~ddGnlvl~~~ 104 (116)
T cd00028 89 YVLVLLDDGNLVLYDS 104 (116)
T ss_pred eEEEEeCCCCEEEECC
Confidence 3444555565555543
No 131
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=51.53 E-value=1.9e+02 Score=32.90 Aligned_cols=127 Identities=19% Similarity=0.219 Sum_probs=73.7
Q ss_pred CceEEEE-cCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321 22 EPFSVAV-SPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 100 (445)
Q Consensus 22 ~P~gIAV-dpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~ 100 (445)
.-..||+ .++.+++++..-.++|..++.+.. ..++++ +.....-...+ ...-..-..+|..+.|.++|+=..
T Consensus 119 YVkcla~~ak~~~lvaSgGLD~~IflWDin~~---~~~l~~-s~n~~t~~sl~---sG~k~siYSLA~N~t~t~ivsGgt 191 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVASGGLDRKIFLWDINTG---TATLVA-SFNNVTVNSLG---SGPKDSIYSLAMNQTGTIIVSGGT 191 (735)
T ss_pred hheeeeecccCceeEEecCCCccEEEEEccCc---chhhhh-hccccccccCC---CCCccceeeeecCCcceEEEecCc
Confidence 4567888 567789888888899999998732 111221 11000000000 001112347888888889998888
Q ss_pred CCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee
Q 013321 101 NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD 173 (445)
Q Consensus 101 N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~ 173 (445)
+..||.+|... +..+.| ..+ +--. +.+.++|.-.+.-...+.|+..++...-|..
T Consensus 192 ek~lr~wDprt~~kimkLrG--------HTd---------NVr~-ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~ 249 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKKIMKLRG--------HTD---------NVRV-LLVNDDGTRLLSASSDGTIRLWDLGQQRCLA 249 (735)
T ss_pred ccceEEeccccccceeeeec--------ccc---------ceEE-EEEcCCCCeEeecCCCceEEeeeccccceee
Confidence 88899998543 233322 111 1112 2456777666666777777777777665543
No 132
>PTZ00420 coronin; Provisional
Probab=51.19 E-value=3.9e+02 Score=29.84 Aligned_cols=118 Identities=12% Similarity=0.049 Sum_probs=64.2
Q ss_pred CceEEEEcCC-CcEEEEeCCCCeEEEEeCCCCCCCc-cEEEecCCC-CcccCCCCCccCccCCCcceEEEcCCCCE-EEE
Q 013321 22 EPFSVAVSPS-GELLVLDSENSNIYKISTSLSPYSR-PKLVAGSPE-GYYGHVDGRPRGARMNHPKGLAVDDRGNI-YIA 97 (445)
Q Consensus 22 ~P~gIAVdpd-G~LYVaDs~n~rI~kid~dg~~~G~-v~~vaG~~~-G~~G~~dG~~~~a~Ln~P~GIavD~dG~L-YVA 97 (445)
...+|+++|+ ++++++-..++.|..++.... +. +..+ ..+. -..++ -..-..|++.+++.. +++
T Consensus 76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~--~~~~~~i-~~p~~~L~gH---------~~~V~sVaf~P~g~~iLaS 143 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHN--DESVKEI-KDPQCILKGH---------KKKISIIDWNPMNYYIMCS 143 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC--Ccccccc-ccceEEeecC---------CCcEEEEEECCCCCeEEEE
Confidence 4578999985 788888888888888886421 11 0000 0000 00111 112358888888764 344
Q ss_pred eCCCCEEEEEcCC-Cc--EEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc
Q 013321 98 DTMNMAIRKISDT-GV--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD 170 (445)
Q Consensus 98 D~~N~rIrkfd~d-Gv--~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~ 170 (445)
=...+.|+.+|.. +. ..+... ....++. ..++|.++++-...+.|+.+++....
T Consensus 144 gS~DgtIrIWDl~tg~~~~~i~~~------------------~~V~Sls-wspdG~lLat~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 144 SGFDSFVNIWDIENEKRAFQINMP------------------KKLSSLK-WNIKGNLLSGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred EeCCCeEEEEECCCCcEEEEEecC------------------CcEEEEE-ECCCCCEEEEEecCCEEEEEECCCCc
Confidence 3446778888853 32 222110 0123333 35667777666556677777776543
No 133
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=50.84 E-value=1.3e+02 Score=25.56 Aligned_cols=56 Identities=14% Similarity=0.263 Sum_probs=33.8
Q ss_pred CcceEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeE
Q 013321 82 HPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAI 161 (445)
Q Consensus 82 ~P~GIavD~dG~LYVAD~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rI 161 (445)
.+..+.++.+|+|++.|..+..|..=+.. . + ..+.. +.+.++|+|.+.|..+..|
T Consensus 54 ~~~~l~l~~dGnLvl~~~~g~~vW~S~t~------~---~---------------~~~~~-~~L~ddGnlvl~~~~~~~~ 108 (114)
T smart00108 54 DSCTLTLQSDGNLVLYDGDGRVVWSSNTT------G---A---------------NGNYV-LVLLDDGNLVIYDSDGNFL 108 (114)
T ss_pred CCEEEEEeCCCCEEEEeCCCCEEEEeccc------C---C---------------CCceE-EEEeCCCCEEEECCCCCEE
Confidence 34678888899999988765444332111 0 0 01122 3467889998888766554
Q ss_pred E
Q 013321 162 R 162 (445)
Q Consensus 162 r 162 (445)
|
T Consensus 109 W 109 (114)
T smart00108 109 W 109 (114)
T ss_pred e
Confidence 4
No 134
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=49.72 E-value=4e+02 Score=29.49 Aligned_cols=65 Identities=18% Similarity=0.149 Sum_probs=39.0
Q ss_pred CCCCEEEEeCCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEEC
Q 013321 90 DRGNIYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL 166 (445)
Q Consensus 90 ~dG~LYVAD~~N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l 166 (445)
.++.|||.|-.|+.++.+|... ++-+.....++ --....|.+.+ . -+|-+.|..+++|..++.
T Consensus 421 dr~el~vididngnv~~idkS~~~lItdf~~~~nsr----------~iAYafP~gy~--t--q~Iklydm~~~Kiy~vTT 486 (668)
T COG4946 421 DRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR----------WIAYAFPEGYY--T--QSIKLYDMDGGKIYDVTT 486 (668)
T ss_pred CceEEEEEEecCCCeeEecccccceeEEEEEcCCce----------eEEEecCccee--e--eeEEEEecCCCeEEEecC
Confidence 4566888888888888888543 33333322211 01123454443 1 367888888888888875
Q ss_pred CC
Q 013321 167 HD 168 (445)
Q Consensus 167 ~~ 168 (445)
..
T Consensus 487 ~t 488 (668)
T COG4946 487 PT 488 (668)
T ss_pred Cc
Confidence 44
No 135
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=48.56 E-value=1.1e+02 Score=31.94 Aligned_cols=121 Identities=17% Similarity=0.221 Sum_probs=74.9
Q ss_pred ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCc-cEEEecCCCCcccCCCCCccCccCCCc-ceEEEcCCCCEEEEeCC
Q 013321 23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSR-PKLVAGSPEGYYGHVDGRPRGARMNHP-KGLAVDDRGNIYIADTM 100 (445)
Q Consensus 23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~-v~~vaG~~~G~~G~~dG~~~~a~Ln~P-~GIavD~dG~LYVAD~~ 100 (445)
-+.+.+.|...|+++.+..+.|..||-.-....+ ..++ +=..| ..|.+.|.|....+-+.
T Consensus 175 vn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~------------------qd~~~vrsiSfHPsGefllvgTd 236 (430)
T KOG0640|consen 175 VNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF------------------QDTEPVRSISFHPSGEFLLVGTD 236 (430)
T ss_pred ccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh------------------hccceeeeEeecCCCceEEEecC
Confidence 4578888887899998888888888754110000 0000 00123 48999999997777777
Q ss_pred CCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee
Q 013321 101 NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD 173 (445)
Q Consensus 101 N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~~~~ 173 (445)
...++.+|-+.-...+.. . | .+..-..-+++- -.+.|+|||+-...+.|..++-...-|..
T Consensus 237 Hp~~rlYdv~T~Qcfvsa--n--------P-d~qht~ai~~V~-Ys~t~~lYvTaSkDG~IklwDGVS~rCv~ 297 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVSA--N--------P-DDQHTGAITQVR-YSSTGSLYVTASKDGAIKLWDGVSNRCVR 297 (430)
T ss_pred CCceeEEeccceeEeeec--C--------c-ccccccceeEEE-ecCCccEEEEeccCCcEEeeccccHHHHH
Confidence 777888886652222110 0 0 011111223343 37889999999999999999876666654
No 136
>PLN00181 protein SPA1-RELATED; Provisional
Probab=48.36 E-value=4.7e+02 Score=29.89 Aligned_cols=120 Identities=11% Similarity=0.128 Sum_probs=62.1
Q ss_pred CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCC-CCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEeC
Q 013321 22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSP-YSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADT 99 (445)
Q Consensus 22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~-~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD~ 99 (445)
.-.+|+++++|+++++-..++.|..++..... .+.... .+ .....+ -....++++.+ .+.++++=.
T Consensus 485 ~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~---~~---~~~~~~------~~~v~~l~~~~~~~~~las~~ 552 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIH---YP---VVELAS------RSKLSGICWNSYIKSQVASSN 552 (793)
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccc---cc---eEEecc------cCceeeEEeccCCCCEEEEEe
Confidence 35789999999998888888889888754210 000000 00 000000 01234677765 345444444
Q ss_pred CCCEEEEEcCC-C--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc
Q 013321 100 MNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD 170 (445)
Q Consensus 100 ~N~rIrkfd~d-G--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~~ 170 (445)
..+.|+.+|.. + +..+.+ .. ..-+++.+...++.++++-...+.|+.+++....
T Consensus 553 ~Dg~v~lWd~~~~~~~~~~~~--------H~---------~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~ 609 (793)
T PLN00181 553 FEGVVQVWDVARSQLVTEMKE--------HE---------KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609 (793)
T ss_pred CCCeEEEEECCCCeEEEEecC--------CC---------CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence 56778888844 3 222211 00 0112344333456666666666777777765433
No 137
>PRK04922 tolB translocation protein TolB; Provisional
Probab=48.00 E-value=3.5e+02 Score=28.36 Aligned_cols=68 Identities=24% Similarity=0.256 Sum_probs=36.7
Q ss_pred EEEEcCCCc-EEEEe-C-CCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEE-EeC
Q 013321 25 SVAVSPSGE-LLVLD-S-ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYI-ADT 99 (445)
Q Consensus 25 gIAVdpdG~-LYVaD-s-~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYV-AD~ 99 (445)
+.+++|||+ |+++. . ++..|++++..+ |+...+.... | . -..+++.++|. |++ ++.
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~---g~~~~l~~~~----g----------~--~~~~~~SpDG~~l~~~~s~ 268 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLAT---GQRELVASFR----G----------I--NGAPSFSPDGRRLALTLSR 268 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCC---CCEEEeccCC----C----------C--ccCceECCCCCEEEEEEeC
Confidence 557778876 44333 2 345688888763 4444443221 1 0 12457778886 443 333
Q ss_pred -CCCEEEEEcCCC
Q 013321 100 -MNMAIRKISDTG 111 (445)
Q Consensus 100 -~N~rIrkfd~dG 111 (445)
++..|..+|.++
T Consensus 269 ~g~~~Iy~~d~~~ 281 (433)
T PRK04922 269 DGNPEIYVMDLGS 281 (433)
T ss_pred CCCceEEEEECCC
Confidence 345788887543
No 138
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=47.77 E-value=3.6e+02 Score=28.36 Aligned_cols=27 Identities=22% Similarity=0.112 Sum_probs=22.9
Q ss_pred eEEEEcCCCcEEEEeCCCCeEEEEeCC
Q 013321 24 FSVAVSPSGELLVLDSENSNIYKISTS 50 (445)
Q Consensus 24 ~gIAVdpdG~LYVaDs~n~rI~kid~d 50 (445)
..|+.+++|...++-+..+.|..++..
T Consensus 69 ~sl~WS~dgr~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 69 TSLCWSRDGRKLLTSSRDWSIKLWDLL 95 (405)
T ss_pred eEEEecCCCCEeeeecCCceeEEEecc
Confidence 689999999999998888888888753
No 139
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.63 E-value=3.8e+02 Score=31.87 Aligned_cols=130 Identities=22% Similarity=0.272 Sum_probs=74.8
Q ss_pred CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCC--------CCccEEEecCCCCc---ccCCCCCccCccCC-CcceEEE
Q 013321 21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSP--------YSRPKLVAGSPEGY---YGHVDGRPRGARMN-HPKGLAV 88 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~--------~G~v~~vaG~~~G~---~G~~dG~~~~a~Ln-~P~GIav 88 (445)
++-.++-+.|.-+|.++.+....|++++++-.. .++...++-.|... .|+..|- ..-++. .+-..|+
T Consensus 251 nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm-~VFkleRErpa~~v 329 (1202)
T KOG0292|consen 251 NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGM-IVFKLERERPAYAV 329 (1202)
T ss_pred CCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCce-EEEEEcccCceEEE
Confidence 566789999987899999999999988876211 24444455444211 3443332 122232 5667888
Q ss_pred cCCCCEEEEeCCCCEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEE---ECCCCeEEE
Q 013321 89 DDRGNIYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVI---DRGNQAIRE 163 (445)
Q Consensus 89 D~dG~LYVAD~~N~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVa---D~gn~rIr~ 163 (445)
..++.+||-| .+|+.+|-.. -+.++--.. .|. .-..|..+.+.+..+.++++ |.+.-.+..
T Consensus 330 ~~n~LfYvkd---~~i~~~d~~t~~d~~v~~lr~---~g~--------~~~~~~smsYNpae~~vlics~~~n~~y~L~~ 395 (1202)
T KOG0292|consen 330 NGNGLFYVKD---RFIRSYDLRTQKDTAVASLRR---PGT--------LWQPPRSLSYNPAENAVLICSNLDNGEYELVQ 395 (1202)
T ss_pred cCCEEEEEcc---ceEEeeeccccccceeEeccC---CCc--------ccCCcceeeeccccCeEEEEeccCCCeEEEEE
Confidence 8777777775 6799888433 222221111 110 11235566777777878777 433334444
Q ss_pred EE
Q 013321 164 IQ 165 (445)
Q Consensus 164 i~ 165 (445)
+.
T Consensus 396 ip 397 (1202)
T KOG0292|consen 396 IP 397 (1202)
T ss_pred ec
Confidence 44
No 140
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=46.71 E-value=2.1e+02 Score=29.35 Aligned_cols=71 Identities=15% Similarity=0.074 Sum_probs=38.2
Q ss_pred CCCEEEEeCCCCEEEEEcCC-CcEEEecCcccCCCCCCCCCccCc-ccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 013321 91 RGNIYIADTMNMAIRKISDT-GVTTIAGGKWSRGVGHVDGPSEDA-KFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD 168 (445)
Q Consensus 91 dG~LYVAD~~N~rIrkfd~d-Gv~tiaGg~~G~g~G~~dgp~~~a-~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~ 168 (445)
++.||+|-+. +++...+.+ +.++..+... . -+|--.. .+..+.-+ .-.-+|.|.-.|..+..||++...|
T Consensus 147 ~~sly~a~t~-G~vlavt~~~~~~~~~w~~~-~-----~~PiF~splcv~~sv~-i~~VdG~l~~f~~sG~qvwr~~t~G 218 (354)
T KOG4649|consen 147 DGSLYAAITA-GAVLAVTKNPYSSTEFWAAT-R-----FGPIFASPLCVGSSVI-ITTVDGVLTSFDESGRQVWRPATKG 218 (354)
T ss_pred CceEEEEecc-ceEEEEccCCCCcceehhhh-c-----CCccccCceeccceEE-EEEeccEEEEEcCCCcEEEeecCCC
Confidence 6778888764 566666643 3222221110 0 0111111 12233322 2356789998998889999998776
Q ss_pred C
Q 013321 169 D 169 (445)
Q Consensus 169 ~ 169 (445)
.
T Consensus 219 p 219 (354)
T KOG4649|consen 219 P 219 (354)
T ss_pred c
Confidence 4
No 141
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=46.03 E-value=4.3e+02 Score=28.79 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=43.6
Q ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcCCCcEEE-ecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEE
Q 013321 84 KGLAVDDRGNIYIADTMNMAIRKISDTGVTTI-AGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIR 162 (445)
Q Consensus 84 ~GIavD~dG~LYVAD~~N~rIrkfd~dGv~ti-aGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr 162 (445)
+.+++.|||.||.+=+.+..|+.+|..-..-+ .+. |. .++. ..| ....+|..+++....+.|.
T Consensus 351 ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp------gh-t~~v--------k~i-~FsENGY~Lat~add~~V~ 414 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP------GH-TGPV--------KAI-SFSENGYWLATAADDGSVK 414 (506)
T ss_pred EEeeEcCCceEEeccCCCceEEEEEcCCccccccCC------CC-CCce--------eEE-EeccCceEEEEEecCCeEE
Confidence 47789999999999999999999984331111 111 10 1111 123 3467777777777666688
Q ss_pred EEECCC
Q 013321 163 EIQLHD 168 (445)
Q Consensus 163 ~i~l~~ 168 (445)
.+++..
T Consensus 415 lwDLRK 420 (506)
T KOG0289|consen 415 LWDLRK 420 (506)
T ss_pred EEEehh
Confidence 887765
No 142
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=45.70 E-value=3.4e+02 Score=27.57 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=22.2
Q ss_pred eEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEe
Q 013321 24 FSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVA 61 (445)
Q Consensus 24 ~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~va 61 (445)
+.+.+|| .|.|+++. +.+.|+.++.. .|++....
T Consensus 118 Nam~ldP~enSi~~Ag-GD~~~y~~dlE---~G~i~r~~ 152 (325)
T KOG0649|consen 118 NAMWLDPSENSILFAG-GDGVIYQVDLE---DGRIQREY 152 (325)
T ss_pred ceeEeccCCCcEEEec-CCeEEEEEEec---CCEEEEEE
Confidence 5677886 56677666 67788888776 35554433
No 143
>PRK04043 tolB translocation protein TolB; Provisional
Probab=45.65 E-value=4e+02 Score=28.29 Aligned_cols=34 Identities=9% Similarity=0.093 Sum_probs=21.5
Q ss_pred EEEEcCCCc--EEEEeCC--CCeEEEEeCCCCCCCccEEEe
Q 013321 25 SVAVSPSGE--LLVLDSE--NSNIYKISTSLSPYSRPKLVA 61 (445)
Q Consensus 25 gIAVdpdG~--LYVaDs~--n~rI~kid~dg~~~G~v~~va 61 (445)
..+++|||+ +|++... +..|++++..+ |+...+.
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t---g~~~~lt 229 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYT---GKKEKIA 229 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCC---CcEEEEe
Confidence 457778875 5654443 46788888764 5555554
No 144
>PRK05137 tolB translocation protein TolB; Provisional
Probab=45.18 E-value=3.9e+02 Score=28.03 Aligned_cols=69 Identities=14% Similarity=0.240 Sum_probs=37.1
Q ss_pred eEEEEcCCCc-E-EEEeC-CCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEE-Ee
Q 013321 24 FSVAVSPSGE-L-LVLDS-ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYI-AD 98 (445)
Q Consensus 24 ~gIAVdpdG~-L-YVaDs-~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYV-AD 98 (445)
...+++|||. | |+++. ++..|+.++..+ |+...+.... + .-...++.+||. |++ ++
T Consensus 205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~---g~~~~l~~~~--------g--------~~~~~~~SPDG~~la~~~~ 265 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYANGRPRVYLLDLET---GQRELVGNFP--------G--------MTFAPRFSPDGRKVVMSLS 265 (435)
T ss_pred EeeEECCCCCEEEEEEecCCCCEEEEEECCC---CcEEEeecCC--------C--------cccCcEECCCCCEEEEEEe
Confidence 4567888887 3 44443 346788888764 4444443221 0 012445677776 333 33
Q ss_pred C-CCCEEEEEcCCC
Q 013321 99 T-MNMAIRKISDTG 111 (445)
Q Consensus 99 ~-~N~rIrkfd~dG 111 (445)
. ++..|..+|.++
T Consensus 266 ~~g~~~Iy~~d~~~ 279 (435)
T PRK05137 266 QGGNTDIYTMDLRS 279 (435)
T ss_pred cCCCceEEEEECCC
Confidence 2 245677777543
No 145
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=44.75 E-value=3.5e+02 Score=27.40 Aligned_cols=35 Identities=9% Similarity=0.101 Sum_probs=22.5
Q ss_pred ccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC
Q 013321 135 KFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD 169 (445)
Q Consensus 135 ~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~l~~~ 169 (445)
.|..|..-+...++++...+..-+..|+-++....
T Consensus 181 y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 181 YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred hcCCcceeEEecCCCCEEEEeeccceeeecccchh
Confidence 45556554556777777777676777777776543
No 146
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=43.40 E-value=93 Score=20.40 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=22.8
Q ss_pred CceEEEEcCCCcEEEEeCCCCeEEEEe
Q 013321 22 EPFSVAVSPSGELLVLDSENSNIYKIS 48 (445)
Q Consensus 22 ~P~gIAVdpdG~LYVaDs~n~rI~kid 48 (445)
...+|+++|++.++++-..++.|..++
T Consensus 13 ~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 13 SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cEEEEEEecccccceeeCCCCEEEEEC
Confidence 468999999999888888888888764
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=42.20 E-value=2.4e+02 Score=31.27 Aligned_cols=68 Identities=9% Similarity=0.215 Sum_probs=50.1
Q ss_pred Cc-ceEEEcC-CCCEEEEeCCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEEC
Q 013321 82 HP-KGLAVDD-RGNIYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR 156 (445)
Q Consensus 82 ~P-~GIavD~-dG~LYVAD~~N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~ 156 (445)
.| .|||+.+ +..|+|+=....+|..||..- ..+++ ...|..-+...++|.++++..
T Consensus 209 AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-------------------y~~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 209 APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-------------------YSHPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred CCcCcceecCCccceEEEecccceEEEeecccccccceee-------------------ecCCcceeeecCCceEEEeec
Confidence 45 4999998 445777777788999999653 22221 234554456788999999999
Q ss_pred CCCeEEEEECCC
Q 013321 157 GNQAIREIQLHD 168 (445)
Q Consensus 157 gn~rIr~i~l~~ 168 (445)
.+++|..+++.+
T Consensus 270 s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 270 SKGELIAYDMRS 281 (673)
T ss_pred CCceEEEEeccc
Confidence 999999999866
No 148
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=41.92 E-value=5.3e+02 Score=28.70 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=26.6
Q ss_pred cCCcEEEEEecCCCCCCCceEEEEcCCCcEEEEeCCCCeEEEEe
Q 013321 5 EGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKIS 48 (445)
Q Consensus 5 e~G~~v~tv~~Gs~~g~~P~gIAVdpdG~LYVaDs~n~rI~kid 48 (445)
+++++.....-|. +-.|+|..|+.++|++-.....+..++
T Consensus 357 ~~~f~~~v~gh~d----elwgla~hps~~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 357 ENGFTLTVQGHGD----ELWGLATHPSKNQLLTCGQDKHVRLWN 396 (626)
T ss_pred cCCceEEEEeccc----ceeeEEcCCChhheeeccCcceEEEcc
Confidence 4455544443332 456899999888999887776666665
No 149
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=41.58 E-value=4.5e+02 Score=31.92 Aligned_cols=142 Identities=14% Similarity=0.163 Sum_probs=74.0
Q ss_pred ecCCcEEEEEecCCCCCCCceEEEEcC--CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCC
Q 013321 4 FEGGYTVETVFEGSKFGMEPFSVAVSP--SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMN 81 (445)
Q Consensus 4 ~e~G~~v~tv~~Gs~~g~~P~gIAVdp--dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln 81 (445)
++.|..+..+-.|......-..+..-. |..|.++-+.++.|+.+..--..-+++.+|.+.. +..+...+ .
T Consensus 1093 ~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~-~Ls~~~~~-------~ 1164 (1387)
T KOG1517|consen 1093 WEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWS-SLSDQLPG-------A 1164 (1387)
T ss_pred cccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeec-cccccCcc-------C
Confidence 344444444333333333334444433 4567788888887777754321114556665542 22221111 0
Q ss_pred CcceEEEc---CCCCEEEEeCCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCC
Q 013321 82 HPKGLAVD---DRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN 158 (445)
Q Consensus 82 ~P~GIavD---~dG~LYVAD~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn 158 (445)
.=.|+.+| ..|.|+++=- -.-||..|.+-...++--..+.. ..++.+-+.-..|+++++....
T Consensus 1165 r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~-------------t~vTaLS~~~~~gn~i~AGfaD 1230 (1387)
T KOG1517|consen 1165 RGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSS-------------TLVTALSADLVHGNIIAAGFAD 1230 (1387)
T ss_pred CCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCC-------------ccceeecccccCCceEEEeecC
Confidence 11256666 4777877632 45577777666444332222211 1233333333458999999999
Q ss_pred CeEEEEECC
Q 013321 159 QAIREIQLH 167 (445)
Q Consensus 159 ~rIr~i~l~ 167 (445)
++||.++..
T Consensus 1231 GsvRvyD~R 1239 (1387)
T KOG1517|consen 1231 GSVRVYDRR 1239 (1387)
T ss_pred CceEEeecc
Confidence 999999954
No 150
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=41.01 E-value=46 Score=25.57 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=22.5
Q ss_pred eEEEEcCCCcEEEEeCC-------CCeEEEEeCCCCC
Q 013321 24 FSVAVSPSGELLVLDSE-------NSNIYKISTSLSP 53 (445)
Q Consensus 24 ~gIAVdpdG~LYVaDs~-------n~rI~kid~dg~~ 53 (445)
++|++.+||.|+++-.. ...|.|++++|+.
T Consensus 4 ~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGsL 40 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGSL 40 (55)
T ss_pred EEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCCc
Confidence 68999999999988642 2348888888543
No 151
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=40.60 E-value=4.4e+02 Score=27.36 Aligned_cols=107 Identities=12% Similarity=0.153 Sum_probs=62.6
Q ss_pred eEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEE
Q 013321 85 GLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 164 (445)
Q Consensus 85 GIavD~dG~LYVAD~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i 164 (445)
+|.....-+..|+=....+|..+|......+ ..+..+..|.+++..|+.+|+-+.+..|..+
T Consensus 99 ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~------------------~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iy 160 (323)
T KOG1036|consen 99 CIEYSYEVGCVISGSWDKTIKFWDPRNKVVV------------------GTFDQGKKVYCMDVSGNRLVVGTSDRKVLIY 160 (323)
T ss_pred EEEeeccCCeEEEcccCccEEEEeccccccc------------------cccccCceEEEEeccCCEEEEeecCceEEEE
Confidence 5555555557777777778888886652111 1123344566778888888888889999999
Q ss_pred ECCCCceeec-CCCCcc---ceEEEEeccceEEEEEEeecCccceeeeccC
Q 013321 165 QLHDDDCSDN-YDDTFH---LGIFVLVAAAFFGYMLALLQRRVQAMFSSKD 211 (445)
Q Consensus 165 ~l~~~~~~~~-~~~g~P---~gIav~~~a~~vg~~~~ll~~~~g~~~~s~~ 211 (445)
++.......+ ..+++- -.++... ..-||+++..-.|+--=+|..+
T Consensus 161 DLRn~~~~~q~reS~lkyqtR~v~~~p--n~eGy~~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 161 DLRNLDEPFQRRESSLKYQTRCVALVP--NGEGYVVSSIEGRVAVEYFDDS 209 (323)
T ss_pred EcccccchhhhccccceeEEEEEEEec--CCCceEEEeecceEEEEccCCc
Confidence 9876444432 222221 1233332 2336666666666644444444
No 152
>PRK00178 tolB translocation protein TolB; Provisional
Probab=40.40 E-value=4.4e+02 Score=27.32 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=37.8
Q ss_pred eEEEEcCCCc-E-EEEeC-CCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEE-Ee
Q 013321 24 FSVAVSPSGE-L-LVLDS-ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYI-AD 98 (445)
Q Consensus 24 ~gIAVdpdG~-L-YVaDs-~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYV-AD 98 (445)
...+++|||+ | |+++. ++..|++++.++ |+...+.... | .-...++.++|. |++ ++
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~---g~~~~l~~~~----g------------~~~~~~~SpDG~~la~~~~ 262 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT---GRREQITNFE----G------------LNGAPAWSPDGSKLAFVLS 262 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCC---CCEEEccCCC----C------------CcCCeEECCCCCEEEEEEc
Confidence 5668888886 4 44443 345788888764 3333332211 1 011456777776 433 33
Q ss_pred C-CCCEEEEEcCCC
Q 013321 99 T-MNMAIRKISDTG 111 (445)
Q Consensus 99 ~-~N~rIrkfd~dG 111 (445)
. ++..|.++|.++
T Consensus 263 ~~g~~~Iy~~d~~~ 276 (430)
T PRK00178 263 KDGNPEIYVMDLAS 276 (430)
T ss_pred cCCCceEEEEECCC
Confidence 2 345788887554
No 153
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=39.94 E-value=3.9e+02 Score=26.54 Aligned_cols=76 Identities=22% Similarity=0.249 Sum_probs=40.6
Q ss_pred CCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCC-CCcccCCCCCccCccCCCcceEEEcCCCC--EEEEeCC--CCEE
Q 013321 30 PSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSP-EGYYGHVDGRPRGARMNHPKGLAVDDRGN--IYIADTM--NMAI 104 (445)
Q Consensus 30 pdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~-~G~~G~~dG~~~~a~Ln~P~GIavD~dG~--LYVAD~~--N~rI 104 (445)
-+|.||.--.+...|+|++... +.+....--+ .+.. +-..-...=..=.++|+|.+|. ||-+... +-.|
T Consensus 77 YngslYY~~~~s~~IvkydL~t---~~v~~~~~L~~A~~~---n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivv 150 (250)
T PF02191_consen 77 YNGSLYYNKYNSRNIVKYDLTT---RSVVARRELPGAGYN---NRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVV 150 (250)
T ss_pred ECCcEEEEecCCceEEEEECcC---CcEEEEEECCccccc---cccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEE
Confidence 3678888888889999999874 3333111111 0110 0000000001123899998884 3333443 4567
Q ss_pred EEEcCCC
Q 013321 105 RKISDTG 111 (445)
Q Consensus 105 rkfd~dG 111 (445)
.|+|++-
T Consensus 151 skld~~t 157 (250)
T PF02191_consen 151 SKLDPET 157 (250)
T ss_pred EeeCccc
Confidence 7898765
No 154
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=39.73 E-value=3.6e+02 Score=27.66 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=43.6
Q ss_pred CCceEEEEcC-CCcEEEEeCCCCeEEEEeCC--CCCCCccEE-EecCCCCcccCCCCCccCccCCCcceEEEcCCCC--E
Q 013321 21 MEPFSVAVSP-SGELLVLDSENSNIYKISTS--LSPYSRPKL-VAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN--I 94 (445)
Q Consensus 21 ~~P~gIAVdp-dG~LYVaDs~n~rI~kid~d--g~~~G~v~~-vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~--L 94 (445)
.+-.|+.+|. .|.|||+. .+-.|+++..+ ++..|++.. +.+.+ -...+..| .+|-..++|. |
T Consensus 205 tQTEG~VaDdEtG~LYIae-EdvaiWK~~Aep~~G~~g~~idr~~d~~-~LtdDvEG----------ltiYy~pnGkGYL 272 (364)
T COG4247 205 TQTEGMVADDETGFLYIAE-EDVAIWKYEAEPNRGNTGRLIDRIKDLS-YLTDDVEG----------LTIYYGPNGKGYL 272 (364)
T ss_pred CcccceeeccccceEEEee-ccceeeecccCCCCCCccchhhhhcCch-hhcccccc----------cEEEEcCCCcEEE
Confidence 5677888876 79999998 46689998754 222233221 11111 00000011 1444556555 5
Q ss_pred EEEeCCCCEEEEEcCCC
Q 013321 95 YIADTMNMAIRKISDTG 111 (445)
Q Consensus 95 YVAD~~N~rIrkfd~dG 111 (445)
..+-.+|+.-..+...|
T Consensus 273 ~aSSQGnNtya~y~ReG 289 (364)
T COG4247 273 LASSQGNNTYAAYTREG 289 (364)
T ss_pred EEecCCCceEEEEEeeC
Confidence 55666777777777666
No 155
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=39.72 E-value=1.6e+02 Score=25.07 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=33.7
Q ss_pred CcceEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeE
Q 013321 82 HPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAI 161 (445)
Q Consensus 82 ~P~GIavD~dG~LYVAD~~N~rIrkfd~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rI 161 (445)
.+..+.+..+|+|++.|..+..|..=+..+ + ..+. .+.+.++|+|.+.+..+..|
T Consensus 55 ~~~~l~l~~dGnLvl~~~~g~~vW~S~~~~---------~---------------~~~~-~~~L~ddGnlvl~~~~~~~~ 109 (116)
T cd00028 55 SSCTLTLQSDGNLVIYDGSGTVVWSSNTTR---------V---------------NGNY-VLVLLDDGNLVLYDSDGNFL 109 (116)
T ss_pred CCEEEEEecCCCeEEEcCCCcEEEEecccC---------C---------------CCce-EEEEeCCCCEEEECCCCCEE
Confidence 456788888999999887554433211111 0 0111 23467889998888765555
Q ss_pred E
Q 013321 162 R 162 (445)
Q Consensus 162 r 162 (445)
|
T Consensus 110 W 110 (116)
T cd00028 110 W 110 (116)
T ss_pred E
Confidence 5
No 156
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=39.40 E-value=2.6e+02 Score=33.19 Aligned_cols=90 Identities=19% Similarity=0.330 Sum_probs=53.2
Q ss_pred CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCC----------CCc---cEEEecCCCCc-ccCCCCCccCc---------
Q 013321 22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSP----------YSR---PKLVAGSPEGY-YGHVDGRPRGA--------- 78 (445)
Q Consensus 22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~----------~G~---v~~vaG~~~G~-~G~~dG~~~~a--------- 78 (445)
.-.+++.+||+++.+.-++.++|+.++.+... .|. +++-.|..+.. -|. .|+..+.
T Consensus 122 GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs-~gK~aa~~~~~p~~~~ 200 (928)
T PF04762_consen 122 GILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGS-AGKAAARQLRDPTVPK 200 (928)
T ss_pred cEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcc-hhhhhhhhccCCCCCc
Confidence 45688999999998888888999988876432 122 12222322211 122 2222111
Q ss_pred ----cCC---CcceEEEcCCCCEEEEeCC------CCEEEEEcCCCc
Q 013321 79 ----RMN---HPKGLAVDDRGNIYIADTM------NMAIRKISDTGV 112 (445)
Q Consensus 79 ----~Ln---~P~GIavD~dG~LYVAD~~------N~rIrkfd~dGv 112 (445)
.+. .-.-|+.-.||..|++-+. .++||+++.+|.
T Consensus 201 ~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~ 247 (928)
T PF04762_consen 201 VDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGE 247 (928)
T ss_pred cccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCce
Confidence 111 3345666688988766553 467999999984
No 157
>PRK04922 tolB translocation protein TolB; Provisional
Probab=39.26 E-value=4.8e+02 Score=27.37 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=16.9
Q ss_pred eEEEcCCCC--EEEEeCC-CCEEEEEcCCC
Q 013321 85 GLAVDDRGN--IYIADTM-NMAIRKISDTG 111 (445)
Q Consensus 85 GIavD~dG~--LYVAD~~-N~rIrkfd~dG 111 (445)
..+++++|. +|++|.. +..|..++.++
T Consensus 296 ~~~~spDG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 296 EPTWAPDGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 467888887 3445543 45688887543
No 158
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=38.56 E-value=6.7e+02 Score=28.89 Aligned_cols=45 Identities=22% Similarity=0.227 Sum_probs=30.1
Q ss_pred ecCCcEEEEEecCCCCCCCceEEEEcCCCcEEEEeCCCCeEEEEeCCC
Q 013321 4 FEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSL 51 (445)
Q Consensus 4 ~e~G~~v~tv~~Gs~~g~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg 51 (445)
...+.+..++.+-++ --+|..+.|+.++.++-++...|+.+++++
T Consensus 438 ~~~~~~~~~L~GH~G---PVyg~sFsPd~rfLlScSED~svRLWsl~t 482 (707)
T KOG0263|consen 438 DDSSGTSRTLYGHSG---PVYGCSFSPDRRFLLSCSEDSSVRLWSLDT 482 (707)
T ss_pred ccCCceeEEeecCCC---ceeeeeecccccceeeccCCcceeeeeccc
Confidence 334444555443221 148999999989999988888777777663
No 159
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=38.48 E-value=1.6e+02 Score=30.45 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=48.4
Q ss_pred CCceEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeC
Q 013321 21 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT 99 (445)
Q Consensus 21 ~~P~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~ 99 (445)
.+--+||++.+|. +.++-+..+++..++... |++... ..|.--+||+..++| |++-+
T Consensus 217 ~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t---g~~~~~-----------------~~l~D~cGva~~~~~--f~~ss 274 (305)
T PF07433_consen 217 GYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT---GRLLGS-----------------VPLPDACGVAPTDDG--FLVSS 274 (305)
T ss_pred CceEEEEEeCCCCEEEEECCCCCEEEEEECCC---CCEeec-----------------cccCceeeeeecCCc--eEEeC
Confidence 4556899999876 667888889999997652 333222 124455689998887 66666
Q ss_pred CCCEEEEEcCCC
Q 013321 100 MNMAIRKISDTG 111 (445)
Q Consensus 100 ~N~rIrkfd~dG 111 (445)
+.+.|..++..+
T Consensus 275 G~G~~~~~~~~~ 286 (305)
T PF07433_consen 275 GQGQLIRLSPDG 286 (305)
T ss_pred CCccEEEccCcc
Confidence 778888887665
No 160
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=38.02 E-value=4.8e+02 Score=27.09 Aligned_cols=110 Identities=12% Similarity=0.118 Sum_probs=65.1
Q ss_pred CceEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321 22 EPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 100 (445)
Q Consensus 22 ~P~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~ 100 (445)
.-.+|++.| +++.||+..+......+|.... ..+.++.|.. . --+.|.+-|+|.-|++=+.
T Consensus 188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~--~c~qtF~ghe--------s--------DINsv~ffP~G~afatGSD 249 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG--QCVQTFEGHE--------S--------DINSVRFFPSGDAFATGSD 249 (343)
T ss_pred cEEEEecCCCCCCeEEecccccceeeeeccCc--ceeEeecccc--------c--------ccceEEEccCCCeeeecCC
Confidence 456888888 8999999888776666665421 2233333321 1 1237888888888888777
Q ss_pred CCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEE
Q 013321 101 NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQ 165 (445)
Q Consensus 101 N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~ 165 (445)
+...|.||-.- +.+... +.....-++++ ...+|+|+++-.....+...+
T Consensus 250 D~tcRlyDlRaD~~~a~ys~---------------~~~~~gitSv~-FS~SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 250 DATCRLYDLRADQELAVYSH---------------DSIICGITSVA-FSKSGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred CceeEEEeecCCcEEeeecc---------------CcccCCceeEE-EcccccEEEeeecCCceeEee
Confidence 77788888322 222211 11111223444 467788877766555555554
No 161
>PRK04792 tolB translocation protein TolB; Provisional
Probab=37.98 E-value=5.2e+02 Score=27.45 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=38.4
Q ss_pred EEEEcCCCc-E-EEEeC-CCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEE-eC
Q 013321 25 SVAVSPSGE-L-LVLDS-ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA-DT 99 (445)
Q Consensus 25 gIAVdpdG~-L-YVaDs-~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA-D~ 99 (445)
..+++|||+ | |+++. +..+|+.++..+ |+...+.... + . -...++.+||. |+++ +.
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~t---g~~~~lt~~~----g----------~--~~~~~wSPDG~~La~~~~~ 282 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYT---QVREKVTSFP----G----------I--NGAPRFSPDGKKLALVLSK 282 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCC---CCeEEecCCC----C----------C--cCCeeECCCCCEEEEEEeC
Confidence 568888887 4 44443 345788888764 3444333211 1 0 11457788887 5543 32
Q ss_pred -CCCEEEEEcCCC
Q 013321 100 -MNMAIRKISDTG 111 (445)
Q Consensus 100 -~N~rIrkfd~dG 111 (445)
++..|..+|.++
T Consensus 283 ~g~~~Iy~~dl~t 295 (448)
T PRK04792 283 DGQPEIYVVDIAT 295 (448)
T ss_pred CCCeEEEEEECCC
Confidence 345688888544
No 162
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=37.26 E-value=6e+02 Score=27.91 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=14.7
Q ss_pred eEEEEcCCCcEEEEeCCCCeEE
Q 013321 24 FSVAVSPSGELLVLDSENSNIY 45 (445)
Q Consensus 24 ~gIAVdpdG~LYVaDs~n~rI~ 45 (445)
.=+..+++|.+||.|..++..+
T Consensus 317 ~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 317 LLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEEeCCCceEEEEECCCCcee
Confidence 3344555788888888777654
No 163
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=36.81 E-value=4.8e+02 Score=28.56 Aligned_cols=26 Identities=8% Similarity=-0.006 Sum_probs=19.2
Q ss_pred EECCCCeEEEEECCCCeEEEEECCCC
Q 013321 144 YVGSSCSLLVIDRGNQAIREIQLHDD 169 (445)
Q Consensus 144 ~vd~dG~LyVaD~gn~rIr~i~l~~~ 169 (445)
+++.++.++|+-...+.|+..+....
T Consensus 161 ~~~~~~hivvtGsYDg~vrl~DtR~~ 186 (487)
T KOG0310|consen 161 ISPANDHIVVTGSYDGKVRLWDTRSL 186 (487)
T ss_pred cccCCCeEEEecCCCceEEEEEeccC
Confidence 45677778888888888888876554
No 164
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=36.70 E-value=2.7e+02 Score=32.26 Aligned_cols=71 Identities=24% Similarity=0.404 Sum_probs=42.1
Q ss_pred CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC-
Q 013321 22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM- 100 (445)
Q Consensus 22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~- 100 (445)
--++++|||+-.+.++--...+|..|+...+ ..+..+-|+. ++ +| .+.-|.+||.| ||||-..
T Consensus 598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sg--Kq~k~FKgs~----~~-eG--------~lIKv~lDPSg-iY~atScs 661 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESG--KQVKSFKGSR----DH-EG--------DLIKVILDPSG-IYLATSCS 661 (1080)
T ss_pred eEEEeeeCCCcceEEEEecccceEEEecccc--ceeeeecccc----cC-CC--------ceEEEEECCCc-cEEEEeec
Confidence 3578999997666666555666777765421 2344554442 11 23 35578899988 5655444
Q ss_pred CCEEEEEc
Q 013321 101 NMAIRKIS 108 (445)
Q Consensus 101 N~rIrkfd 108 (445)
+..|-.+|
T Consensus 662 dktl~~~D 669 (1080)
T KOG1408|consen 662 DKTLCFVD 669 (1080)
T ss_pred CCceEEEE
Confidence 44455565
No 165
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=36.51 E-value=7.9e+02 Score=29.12 Aligned_cols=77 Identities=13% Similarity=0.192 Sum_probs=49.1
Q ss_pred CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccE-EEecCCCCcccCCCCCccCccCCCc-ceEEEcCCCC-EEEEe
Q 013321 22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHP-KGLAVDDRGN-IYIAD 98 (445)
Q Consensus 22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~-~vaG~~~G~~G~~dG~~~~a~Ln~P-~GIavD~dG~-LYVAD 98 (445)
.-.+|..+|+|++.++-.+++.|+.++... +.+. ++-|.. ... +..++.+ .-++..|+|. +.|.-
T Consensus 140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~---~~~~~tl~~v~-k~n--------~~~~s~i~~~~aW~Pk~g~la~~~ 207 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQD---GILSKTLTGVD-KDN--------EFILSRICTRLAWHPKGGTLAVPP 207 (933)
T ss_pred ceeeeeEcCCCCEEEEEecCceEEEEEccc---chhhhhcccCC-ccc--------cccccceeeeeeecCCCCeEEeec
Confidence 347899999999999999999999999762 2222 222211 000 1112334 3567888755 44444
Q ss_pred CCCCEEEEEcCCC
Q 013321 99 TMNMAIRKISDTG 111 (445)
Q Consensus 99 ~~N~rIrkfd~dG 111 (445)
..+.|..|+.+|
T Consensus 208 -~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 208 -VDNTVKVYSRKG 219 (933)
T ss_pred -cCCeEEEEccCC
Confidence 467899999877
No 166
>PRK01742 tolB translocation protein TolB; Provisional
Probab=36.35 E-value=5.3e+02 Score=27.04 Aligned_cols=69 Identities=25% Similarity=0.236 Sum_probs=37.9
Q ss_pred eEEEEcCCCc-E-EEEeC-CCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEE-e
Q 013321 24 FSVAVSPSGE-L-LVLDS-ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA-D 98 (445)
Q Consensus 24 ~gIAVdpdG~-L-YVaDs-~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA-D 98 (445)
..++++|||+ | |+++. .+..|+.++..+ |+...+.... | . -..+++.+||. |+++ +
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t---g~~~~l~~~~----g----------~--~~~~~wSPDG~~La~~~~ 267 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRS---GARKVVASFR----G----------H--NGAPAFSPDGSRLAFASS 267 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeCCC---CceEEEecCC----C----------c--cCceeECCCCCEEEEEEe
Confidence 5678888887 3 33432 335688888763 3333332211 1 0 11467888887 4443 3
Q ss_pred -CCCCEEEEEcCCC
Q 013321 99 -TMNMAIRKISDTG 111 (445)
Q Consensus 99 -~~N~rIrkfd~dG 111 (445)
.++..|..+|.++
T Consensus 268 ~~g~~~Iy~~d~~~ 281 (429)
T PRK01742 268 KDGVLNIYVMGANG 281 (429)
T ss_pred cCCcEEEEEEECCC
Confidence 3345677777543
No 167
>PRK01029 tolB translocation protein TolB; Provisional
Probab=35.90 E-value=5.5e+02 Score=27.15 Aligned_cols=71 Identities=18% Similarity=0.169 Sum_probs=37.0
Q ss_pred eEEEEcCCCc-E-EEEeC-CCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEE-Ee
Q 013321 24 FSVAVSPSGE-L-LVLDS-ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYI-AD 98 (445)
Q Consensus 24 ~gIAVdpdG~-L-YVaDs-~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYV-AD 98 (445)
...+++|||. | |++|. ++.+|++++.++.. +....+.... ..-...++.+||. |++ ++
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g-~~~~~lt~~~----------------~~~~~p~wSPDG~~Laf~~~ 346 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG-QSPRLLTKKY----------------RNSSCPAWSPDGKKIAFCSV 346 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECcccc-cceEEeccCC----------------CCccceeECCCCCEEEEEEc
Confidence 3468889887 4 44543 33567777654210 1222222110 0123456788887 433 33
Q ss_pred C-CCCEEEEEcCCC
Q 013321 99 T-MNMAIRKISDTG 111 (445)
Q Consensus 99 ~-~N~rIrkfd~dG 111 (445)
. +..+|.++|.++
T Consensus 347 ~~g~~~I~v~dl~~ 360 (428)
T PRK01029 347 IKGVRQICVYDLAT 360 (428)
T ss_pred CCCCcEEEEEECCC
Confidence 3 245788888544
No 168
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=35.80 E-value=41 Score=21.11 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=13.2
Q ss_pred CcceEEEcCCCCEEEEe
Q 013321 82 HPKGLAVDDRGNIYIAD 98 (445)
Q Consensus 82 ~P~GIavD~dG~LYVAD 98 (445)
.-..|+.|++|+|||+-
T Consensus 6 ~I~~i~~D~~G~lWigT 22 (24)
T PF07494_consen 6 NIYSIYEDSDGNLWIGT 22 (24)
T ss_dssp CEEEEEE-TTSCEEEEE
T ss_pred eEEEEEEcCCcCEEEEe
Confidence 34589999999999974
No 169
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=35.70 E-value=1.4e+02 Score=33.01 Aligned_cols=68 Identities=21% Similarity=0.207 Sum_probs=48.9
Q ss_pred eEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCc-ceEEEcCCCCEEEEeCCC
Q 013321 24 FSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHP-KGLAVDDRGNIYIADTMN 101 (445)
Q Consensus 24 ~gIAVdpdG~-LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P-~GIavD~dG~LYVAD~~N 101 (445)
.||++.|..+ |+|+-....+|..+|... ... ...++ -.+| ..|++.++|.+.+|-..+
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s-~~s-~~~l~------------------y~~Plstvaf~~~G~~L~aG~s~ 271 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRS-QAS-TDRLT------------------YSHPLSTVAFSECGTYLCAGNSK 271 (673)
T ss_pred CcceecCCccceEEEecccceEEEeeccc-ccc-cceee------------------ecCCcceeeecCCceEEEeecCC
Confidence 6899999555 788888889999998641 100 11111 1245 389999999999999999
Q ss_pred CEEEEEcCCC
Q 013321 102 MAIRKISDTG 111 (445)
Q Consensus 102 ~rIrkfd~dG 111 (445)
++|..+|..+
T Consensus 272 G~~i~YD~R~ 281 (673)
T KOG4378|consen 272 GELIAYDMRS 281 (673)
T ss_pred ceEEEEeccc
Confidence 9999999544
No 170
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=35.51 E-value=5.2e+02 Score=26.68 Aligned_cols=112 Identities=12% Similarity=0.158 Sum_probs=70.8
Q ss_pred ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321 23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 101 (445)
Q Consensus 23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v-~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N 101 (445)
-.++++.+||+..++-+-.+.++..|..+ |+. ..++|-. .--.++++++|..-.|+-+..
T Consensus 66 v~dv~~s~dg~~alS~swD~~lrlWDl~~---g~~t~~f~GH~----------------~dVlsva~s~dn~qivSGSrD 126 (315)
T KOG0279|consen 66 VSDVVLSSDGNFALSASWDGTLRLWDLAT---GESTRRFVGHT----------------KDVLSVAFSTDNRQIVSGSRD 126 (315)
T ss_pred ecceEEccCCceEEeccccceEEEEEecC---CcEEEEEEecC----------------CceEEEEecCCCceeecCCCc
Confidence 45788989999999988888888888874 333 2343321 112489999988888888888
Q ss_pred CEEEEEcCCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECC-CCeEEEEECCC
Q 013321 102 MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-NQAIREIQLHD 168 (445)
Q Consensus 102 ~rIrkfd~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~g-n~rIr~i~l~~ 168 (445)
..|...+.-| ..++..... + .+-+++.+++...+.+++..+ ...|...++.+
T Consensus 127 kTiklwnt~g~ck~t~~~~~~-~--------------~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~ 181 (315)
T KOG0279|consen 127 KTIKLWNTLGVCKYTIHEDSH-R--------------EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN 181 (315)
T ss_pred ceeeeeeecccEEEEEecCCC-c--------------CcEEEEEEcCCCCCcEEEEccCCceEEEEccCC
Confidence 8888888766 555543210 1 133455554444355555554 44555555544
No 171
>PRK01742 tolB translocation protein TolB; Provisional
Probab=35.10 E-value=5.5e+02 Score=26.90 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=18.2
Q ss_pred ceEEEcCCCC-EE-EEeC-CCCEEEEEcCCC
Q 013321 84 KGLAVDDRGN-IY-IADT-MNMAIRKISDTG 111 (445)
Q Consensus 84 ~GIavD~dG~-LY-VAD~-~N~rIrkfd~dG 111 (445)
...++.+||. |+ ++|. ++-+|..++.++
T Consensus 295 ~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~ 325 (429)
T PRK01742 295 TEPSWSPDGQSILFTSDRSGSPQVYRMSASG 325 (429)
T ss_pred CCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 3677888887 44 4543 355777777654
No 172
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=33.66 E-value=8e+02 Score=29.28 Aligned_cols=115 Identities=12% Similarity=0.110 Sum_probs=61.6
Q ss_pred ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccC------cc-CCCc---ceEEEcCCC
Q 013321 23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRG------AR-MNHP---KGLAVDDRG 92 (445)
Q Consensus 23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~------a~-Ln~P---~GIavD~dG 92 (445)
-..|.+++||..+.+.+...-|.+....+ .-...++|+. +|.... .. ..++ .+|+.++++
T Consensus 72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~---~~~~~~fgs~-------g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~ 141 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGSDDRLVMIWERAE---IGSGTVFGST-------GGAKNVESWKVVSILRGHDSDVLDVNWSPDD 141 (942)
T ss_pred eeEEEECCCCCeEeeccCcceEEEeeecc---cCCccccccc-------ccccccceeeEEEEEecCCCccceeccCCCc
Confidence 35677888887766666665555555541 0011122221 111100 01 1233 378888999
Q ss_pred CEEEEeCCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeEEEEE
Q 013321 93 NIYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQ 165 (445)
Q Consensus 93 ~LYVAD~~N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rIr~i~ 165 (445)
.++|+=...+.|..+|... +.++.+- -..+-++. .|+-|..+..-.+.+.|....
T Consensus 142 ~~lvS~s~DnsViiwn~~tF~~~~vl~~H-----------------~s~VKGvs-~DP~Gky~ASqsdDrtikvwr 199 (942)
T KOG0973|consen 142 SLLVSVSLDNSVIIWNAKTFELLKVLRGH-----------------QSLVKGVS-WDPIGKYFASQSDDRTLKVWR 199 (942)
T ss_pred cEEEEecccceEEEEccccceeeeeeecc-----------------cccccceE-ECCccCeeeeecCCceEEEEE
Confidence 9999888888999998543 3333221 11223333 466666666555555555555
No 173
>PRK00178 tolB translocation protein TolB; Provisional
Probab=33.63 E-value=5.6e+02 Score=26.54 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=15.6
Q ss_pred eEEEcCCCC-E-EEEeCC-CCEEEEEcCC
Q 013321 85 GLAVDDRGN-I-YIADTM-NMAIRKISDT 110 (445)
Q Consensus 85 GIavD~dG~-L-YVAD~~-N~rIrkfd~d 110 (445)
..++.++|. | |.+|.. +..|.+++.+
T Consensus 291 ~~~~spDg~~i~f~s~~~g~~~iy~~d~~ 319 (430)
T PRK00178 291 EPFWGKDGRTLYFTSDRGGKPQIYKVNVN 319 (430)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECC
Confidence 456777776 4 445443 4578877743
No 174
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=32.87 E-value=5.4e+02 Score=26.16 Aligned_cols=68 Identities=25% Similarity=0.279 Sum_probs=36.1
Q ss_pred EEEEcCCCc-EEEEeC--CCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCC-EEEEeC-
Q 013321 25 SVAVSPSGE-LLVLDS--ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT- 99 (445)
Q Consensus 25 gIAVdpdG~-LYVaDs--~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~- 99 (445)
..+++|||. |+++.. +...|++++..+ |+...+.... + ....+++.++|. |+++..
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~---g~~~~~~~~~--------~--------~~~~~~~spDg~~l~~~~~~ 254 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLAT---GQREKVASFP--------G--------MNGAPAFSPDGSKLAVSLSK 254 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCC---CCEEEeecCC--------C--------CccceEECCCCCEEEEEECC
Confidence 456777776 333332 235677777653 3333332210 0 122467888886 655433
Q ss_pred -CCCEEEEEcCCC
Q 013321 100 -MNMAIRKISDTG 111 (445)
Q Consensus 100 -~N~rIrkfd~dG 111 (445)
++..|..++.++
T Consensus 255 ~~~~~i~~~d~~~ 267 (417)
T TIGR02800 255 DGNPDIYVMDLDG 267 (417)
T ss_pred CCCccEEEEECCC
Confidence 245688887543
No 175
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=32.84 E-value=1.2e+02 Score=29.78 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=19.1
Q ss_pred CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCC
Q 013321 21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLS 52 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~ 52 (445)
..|.++|++.+|-+-|.+. ++. .++.+|.
T Consensus 76 g~~lDlAI~G~GFF~V~~~-~G~--~yTR~G~ 104 (238)
T PRK12690 76 GGQFDFAIEGEGFFMVETP-QGE--RLTRAGS 104 (238)
T ss_pred CCceeEEECCCcEEEEEcC-CCC--EEeeCCC
Confidence 7899999988876655554 342 2666643
No 176
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=32.53 E-value=6.4e+02 Score=26.86 Aligned_cols=73 Identities=14% Similarity=0.189 Sum_probs=48.5
Q ss_pred ceEEEcCCCCEEEEeCCCC-EEEEEc-CCCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCeE
Q 013321 84 KGLAVDDRGNIYIADTMNM-AIRKIS-DTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAI 161 (445)
Q Consensus 84 ~GIavD~dG~LYVAD~~N~-rIrkfd-~dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~rI 161 (445)
..||++++|.+.-+=+..+ -||+|+ ++|.....+.- |. ....-..|+ .++++.++.+-..+..|
T Consensus 177 Aalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR-----G~--------~~~~IySL~-Fs~ds~~L~~sS~TeTV 242 (391)
T KOG2110|consen 177 AALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR-----GT--------YPVSIYSLS-FSPDSQFLAASSNTETV 242 (391)
T ss_pred eEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC-----Cc--------eeeEEEEEE-ECCCCCeEEEecCCCeE
Confidence 4899999999877655554 467777 66744443321 10 112234454 58888888888899999
Q ss_pred EEEECCCCc
Q 013321 162 REIQLHDDD 170 (445)
Q Consensus 162 r~i~l~~~~ 170 (445)
..|.++...
T Consensus 243 HiFKL~~~~ 251 (391)
T KOG2110|consen 243 HIFKLEKVS 251 (391)
T ss_pred EEEEecccc
Confidence 999987643
No 177
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=31.29 E-value=2e+02 Score=33.25 Aligned_cols=75 Identities=19% Similarity=0.356 Sum_probs=43.5
Q ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcC-CC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCe
Q 013321 84 KGLAVDDRGNIYIADTMNMAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQA 160 (445)
Q Consensus 84 ~GIavD~dG~LYVAD~~N~rIrkfd~-dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~r 160 (445)
.+|+||+.-.+.++=.....|+.|+. .| +.++.|.. +. +| .+.-+ ..|+.|..+++.-.+..
T Consensus 600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~-----~~-eG--------~lIKv-~lDPSgiY~atScsdkt 664 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSR-----DH-EG--------DLIKV-ILDPSGIYLATSCSDKT 664 (1080)
T ss_pred EEeeeCCCcceEEEEecccceEEEeccccceeeeecccc-----cC-CC--------ceEEE-EECCCccEEEEeecCCc
Confidence 48999997765555445566888884 45 34443311 00 01 12223 35777755555556777
Q ss_pred EEEEECCCCceee
Q 013321 161 IREIQLHDDDCSD 173 (445)
Q Consensus 161 Ir~i~l~~~~~~~ 173 (445)
|-.++.....|.-
T Consensus 665 l~~~Df~sgEcvA 677 (1080)
T KOG1408|consen 665 LCFVDFVSGECVA 677 (1080)
T ss_pred eEEEEeccchhhh
Confidence 8888877766654
No 178
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=31.04 E-value=4.2e+02 Score=28.64 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=54.0
Q ss_pred CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEeC
Q 013321 21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADT 99 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD~ 99 (445)
..-++|+++|+|....+.+..+.+.+++.... ..+.++.+ .-|--..|.+.+ .|...|+-.
T Consensus 346 k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r--~~ly~ipA----------------H~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 346 KEILSVAFSPNGYHLATGSSDNTCKVWDLRMR--SELYTIPA----------------HSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred cceeeEeECCCceEEeecCCCCcEEEeeeccc--ccceeccc----------------ccchhhheEecccCCeEEEEcc
Confidence 35689999999998888888777777766421 11222222 234456889997 677888888
Q ss_pred CCCEEEEEcCCC---cEEEec
Q 013321 100 MNMAIRKISDTG---VTTIAG 117 (445)
Q Consensus 100 ~N~rIrkfd~dG---v~tiaG 117 (445)
..+.+...+..+ +.+++|
T Consensus 408 yD~t~kiWs~~~~~~~ksLaG 428 (459)
T KOG0272|consen 408 YDNTVKIWSTRTWSPLKSLAG 428 (459)
T ss_pred cCcceeeecCCCcccchhhcC
Confidence 888899888766 445544
No 179
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=30.69 E-value=2.5e+02 Score=31.22 Aligned_cols=71 Identities=23% Similarity=0.250 Sum_probs=51.6
Q ss_pred CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCC
Q 013321 21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 100 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~ 100 (445)
..+...|.+|+.+.+|..-.++.|..++.+ ..++..+-. . -.|+-|+..++|.++++=..
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~----~~~t~~~ka---------------~-~~P~~iaWHp~gai~~V~s~ 319 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTT----RGVTLLAKA---------------E-FIPTLIAWHPDGAIFVVGSE 319 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcC----CCeeeeeee---------------c-ccceEEEEcCCCcEEEEEcC
Confidence 466777888877777777777888888875 223333211 1 25999999999998888778
Q ss_pred CCEEEEEcCCC
Q 013321 101 NMAIRKISDTG 111 (445)
Q Consensus 101 N~rIrkfd~dG 111 (445)
.+.|+.||..-
T Consensus 320 qGelQ~FD~AL 330 (545)
T PF11768_consen 320 QGELQCFDMAL 330 (545)
T ss_pred CceEEEEEeec
Confidence 89999999654
No 180
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=30.65 E-value=6e+02 Score=25.95 Aligned_cols=70 Identities=9% Similarity=0.061 Sum_probs=44.0
Q ss_pred eEEEcCCCCEEEEeCCCCEEEEEcCCCcE----EEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCe
Q 013321 85 GLAVDDRGNIYIADTMNMAIRKISDTGVT----TIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQA 160 (445)
Q Consensus 85 GIavD~dG~LYVAD~~N~rIrkfd~dGv~----tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~r 160 (445)
...+.|++...++-.....+++++.++.+ .+.|+ -.+-++.+ ...+|..+|+-...+.
T Consensus 220 ~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh-----------------~rWvWdc~-FS~dg~YlvTassd~~ 281 (311)
T KOG0315|consen 220 RCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH-----------------QRWVWDCA-FSADGEYLVTASSDHT 281 (311)
T ss_pred EEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC-----------------CceEEeee-eccCccEEEecCCCCc
Confidence 44566888888877777788888877741 11111 02445555 4677777777776677
Q ss_pred EEEEECCCCcee
Q 013321 161 IREIQLHDDDCS 172 (445)
Q Consensus 161 Ir~i~l~~~~~~ 172 (445)
++..++......
T Consensus 282 ~rlW~~~~~k~v 293 (311)
T KOG0315|consen 282 ARLWDLSAGKEV 293 (311)
T ss_pred eeecccccCcee
Confidence 777776654433
No 181
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=30.13 E-value=5.5e+02 Score=28.25 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=44.6
Q ss_pred CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCc-ceEEEcCCCCEEEEeC
Q 013321 21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHP-KGLAVDDRGNIYIADT 99 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P-~GIavD~dG~LYVAD~ 99 (445)
..-++++.+.+|++.++...++.++.++.+|. .....+.. ..| ..|-...+|+...+=.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~----l~~tl~~H----------------kgPI~slKWnk~G~yilS~~ 295 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGN----LISTLGQH----------------KGPIFSLKWNKKGTYILSGG 295 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCch----hhhhhhcc----------------CCceEEEEEcCCCCEEEecc
Confidence 56789999999999999999999999998843 32222221 112 2555556666444444
Q ss_pred CCCEEEEEc
Q 013321 100 MNMAIRKIS 108 (445)
Q Consensus 100 ~N~rIrkfd 108 (445)
..+++..+|
T Consensus 296 vD~ttilwd 304 (524)
T KOG0273|consen 296 VDGTTILWD 304 (524)
T ss_pred CCccEEEEe
Confidence 455566666
No 182
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=29.72 E-value=6.1e+02 Score=25.78 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=15.8
Q ss_pred eEEEcCCCC-E-EEEeCC-CCEEEEEcCCC
Q 013321 85 GLAVDDRGN-I-YIADTM-NMAIRKISDTG 111 (445)
Q Consensus 85 GIavD~dG~-L-YVAD~~-N~rIrkfd~dG 111 (445)
..++.++|. | |++|.. ...|..++.++
T Consensus 282 ~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 282 EPSWSPDGKSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred CEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 345667776 4 445533 44788887544
No 183
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=29.56 E-value=2.6e+02 Score=29.28 Aligned_cols=70 Identities=19% Similarity=0.304 Sum_probs=47.0
Q ss_pred eEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCCE
Q 013321 24 FSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMA 103 (445)
Q Consensus 24 ~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~r 103 (445)
..|.+.|.|+..++.+....++.++-++. +..+-+. | ..++ -..-+.|-..+.|+|||+-+..++
T Consensus 220 rsiSfHPsGefllvgTdHp~~rlYdv~T~---Qcfvsan-P--d~qh---------t~ai~~V~Ys~t~~lYvTaSkDG~ 284 (430)
T KOG0640|consen 220 RSISFHPSGEFLLVGTDHPTLRLYDVNTY---QCFVSAN-P--DDQH---------TGAITQVRYSSTGSLYVTASKDGA 284 (430)
T ss_pred eeEeecCCCceEEEecCCCceeEEeccce---eEeeecC-c--cccc---------ccceeEEEecCCccEEEEeccCCc
Confidence 67899999998888777777777776531 1111111 1 1111 112347778899999999999999
Q ss_pred EEEEc
Q 013321 104 IRKIS 108 (445)
Q Consensus 104 Irkfd 108 (445)
|+.+|
T Consensus 285 IklwD 289 (430)
T KOG0640|consen 285 IKLWD 289 (430)
T ss_pred EEeec
Confidence 99997
No 184
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=29.22 E-value=5.8e+02 Score=25.32 Aligned_cols=69 Identities=17% Similarity=0.132 Sum_probs=39.5
Q ss_pred eEEEcCCCCEEEEeCCC---CEEE-EEcCCC-cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCC
Q 013321 85 GLAVDDRGNIYIADTMN---MAIR-KISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ 159 (445)
Q Consensus 85 GIavD~dG~LYVAD~~N---~rIr-kfd~dG-v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~ 159 (445)
|=||.--|.||+.|..+ .+|. .||... ......- .-...+.....|-+.+.+..||+-|.|..
T Consensus 174 ~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i------------~f~~~~~~~~~l~YNP~dk~LY~wd~G~~ 241 (250)
T PF02191_consen 174 GNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSI------------PFPNPYGNISMLSYNPRDKKLYAWDNGYQ 241 (250)
T ss_pred cceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceee------------eeccccCceEeeeECCCCCeEEEEECCeE
Confidence 44566679999999875 4454 666432 1110000 00112233445567788889999998766
Q ss_pred eEEEEE
Q 013321 160 AIREIQ 165 (445)
Q Consensus 160 rIr~i~ 165 (445)
.+..+.
T Consensus 242 v~Y~v~ 247 (250)
T PF02191_consen 242 VTYDVR 247 (250)
T ss_pred EEEEEE
Confidence 655554
No 185
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=29.00 E-value=7.4e+02 Score=26.52 Aligned_cols=96 Identities=19% Similarity=0.144 Sum_probs=56.1
Q ss_pred CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCCC-----CCccEEEec---CCC----CcccCCCCCcc------------
Q 013321 21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSP-----YSRPKLVAG---SPE----GYYGHVDGRPR------------ 76 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~-----~G~v~~vaG---~~~----G~~G~~dG~~~------------ 76 (445)
.+-.+|+|+|-++.|++.+....|-.+|..++. .|-+.++-| +.. .++| .|+...
T Consensus 152 gWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g-edk~VKCwDLe~nkvIR~ 230 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG-EDKQVKCWDLEYNKVIRH 230 (460)
T ss_pred ceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec-CCCeeEEEechhhhhHHH
Confidence 477899999976777777777777777765321 122222222 110 1122 122210
Q ss_pred -CccCCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC---cEEEec
Q 013321 77 -GARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG---VTTIAG 117 (445)
Q Consensus 77 -~a~Ln~P~GIavD~dG~LYVAD~~N~rIrkfd~dG---v~tiaG 117 (445)
...|..-.++++.|.-++.|+-.....||+.|... +.++.|
T Consensus 231 YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 231 YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred hccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC
Confidence 22456667888888777888777777788888332 666655
No 186
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=28.94 E-value=1.8e+02 Score=34.32 Aligned_cols=69 Identities=19% Similarity=0.286 Sum_probs=50.2
Q ss_pred CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321 22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 101 (445)
Q Consensus 22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N 101 (445)
.-.+|+.+|++.++|+-+..+.|..++... ...++++-|. -..+.||++||-|..+-+-+..
T Consensus 131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t--F~~~~vl~~H----------------~s~VKGvs~DP~Gky~ASqsdD 192 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKT--FELLKVLRGH----------------QSLVKGVSWDPIGKYFASQSDD 192 (942)
T ss_pred ccceeccCCCccEEEEecccceEEEEcccc--ceeeeeeecc----------------cccccceEECCccCeeeeecCC
Confidence 346788999999999999999999998652 1333333332 2367899999999888877776
Q ss_pred CEEEEEc
Q 013321 102 MAIRKIS 108 (445)
Q Consensus 102 ~rIrkfd 108 (445)
+.|++..
T Consensus 193 rtikvwr 199 (942)
T KOG0973|consen 193 RTLKVWR 199 (942)
T ss_pred ceEEEEE
Confidence 6666555
No 187
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=28.48 E-value=4.9e+02 Score=24.28 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=40.6
Q ss_pred ceEEEEcCCCcEE-EE-eCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEE-EEeC
Q 013321 23 PFSVAVSPSGELL-VL-DSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIY-IADT 99 (445)
Q Consensus 23 P~gIAVdpdG~LY-Va-Ds~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LY-VAD~ 99 (445)
-.+++.+|+|+-+ |+ .....+|..++.. +....-.+. ...+.|+.+|+|++. ++..
T Consensus 62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~----~~~i~~~~~-----------------~~~n~i~wsP~G~~l~~~g~ 120 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVK----GKKIFSFGT-----------------QPRNTISWSPDGRFLVLAGF 120 (194)
T ss_pred eEEEEECcCCCEEEEEEccCCcccEEEcCc----ccEeEeecC-----------------CCceEEEECCCCCEEEEEEc
Confidence 4778888877633 33 2233466667664 222211111 123479999999844 4554
Q ss_pred C--CCEEEEEcCCCcEEE
Q 013321 100 M--NMAIRKISDTGVTTI 115 (445)
Q Consensus 100 ~--N~rIrkfd~dGv~ti 115 (445)
+ ++.|..+|......+
T Consensus 121 ~n~~G~l~~wd~~~~~~i 138 (194)
T PF08662_consen 121 GNLNGDLEFWDVRKKKKI 138 (194)
T ss_pred cCCCcEEEEEECCCCEEe
Confidence 4 457888887654433
No 188
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=28.45 E-value=2.8e+02 Score=29.38 Aligned_cols=72 Identities=15% Similarity=0.122 Sum_probs=44.9
Q ss_pred CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321 22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 101 (445)
Q Consensus 22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N 101 (445)
.-..||++++|.+..+-+..+.|.|+-.-- .|+...- ...|. ....-..|+|++++.+..|-..+
T Consensus 175 ~lAalafs~~G~llATASeKGTVIRVf~v~--~G~kl~e-----FRRG~--------~~~~IySL~Fs~ds~~L~~sS~T 239 (391)
T KOG2110|consen 175 PLAALAFSPDGTLLATASEKGTVIRVFSVP--EGQKLYE-----FRRGT--------YPVSIYSLSFSPDSQFLAASSNT 239 (391)
T ss_pred ceeEEEECCCCCEEEEeccCceEEEEEEcC--CccEeee-----eeCCc--------eeeEEEEEEECCCCCeEEEecCC
Confidence 346789999999988888888877753210 0111110 11121 11233489999999988777777
Q ss_pred CEEEEEc
Q 013321 102 MAIRKIS 108 (445)
Q Consensus 102 ~rIrkfd 108 (445)
..|..|.
T Consensus 240 eTVHiFK 246 (391)
T KOG2110|consen 240 ETVHIFK 246 (391)
T ss_pred CeEEEEE
Confidence 7777775
No 189
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=27.71 E-value=3e+02 Score=23.59 Aligned_cols=58 Identities=24% Similarity=0.381 Sum_probs=34.3
Q ss_pred ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCC
Q 013321 23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM 102 (445)
Q Consensus 23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~ 102 (445)
.+-+.+..||+|.+.|..+..|+.-... .+ .-..+.-+.+.++|+|.+-|. .+
T Consensus 20 ~~~L~l~~dGnLvl~~~~~~~iWss~~t-----------------~~---------~~~~~~~~~L~~~GNlvl~d~-~~ 72 (114)
T PF01453_consen 20 NYTLILQSDGNLVLYDSNGSVIWSSNNT-----------------SG---------RGNSGCYLVLQDDGNLVLYDS-SG 72 (114)
T ss_dssp TEEEEEETTSEEEEEETTTEEEEE--S------------------TT---------SS-SSEEEEEETTSEEEEEET-TS
T ss_pred cccceECCCCeEEEEcCCCCEEEEeccc-----------------CC---------ccccCeEEEEeCCCCEEEEee-cc
Confidence 4668888899998888664333322111 00 011355778888999999995 33
Q ss_pred EEEEE
Q 013321 103 AIRKI 107 (445)
Q Consensus 103 rIrkf 107 (445)
++.--
T Consensus 73 ~~lW~ 77 (114)
T PF01453_consen 73 NVLWQ 77 (114)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 44333
No 190
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=27.71 E-value=6.8e+02 Score=25.68 Aligned_cols=74 Identities=8% Similarity=0.103 Sum_probs=44.4
Q ss_pred CcceEEEcCCCCEEEEeCCCCEEEEEc-CCC--cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCC
Q 013321 82 HPKGLAVDDRGNIYIADTMNMAIRKIS-DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN 158 (445)
Q Consensus 82 ~P~GIavD~dG~LYVAD~~N~rIrkfd-~dG--v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn 158 (445)
.-+-++...++++||+-.++++|..+. +.. +.+|..- -..-.+| ..+++|.-+.+-...
T Consensus 149 e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH-----------------~snCicI-~f~p~GryfA~GsAD 210 (313)
T KOG1407|consen 149 EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAH-----------------PSNCICI-EFDPDGRYFATGSAD 210 (313)
T ss_pred eeeeeeecCCCCEEEEecCCceEEEEeccccccccccccC-----------------CcceEEE-EECCCCceEeecccc
Confidence 345777777888999999999988887 322 3333111 1112233 357788766666655
Q ss_pred CeEEEEECCCCceee
Q 013321 159 QAIREIQLHDDDCSD 173 (445)
Q Consensus 159 ~rIr~i~l~~~~~~~ 173 (445)
..+.-.+++.-.|..
T Consensus 211 AlvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 211 ALVSLWDVDELICER 225 (313)
T ss_pred ceeeccChhHhhhhe
Confidence 566666666555543
No 191
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=27.49 E-value=2.8e+02 Score=31.65 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=25.2
Q ss_pred CCceEEEEcCCCcEEEEeCCCCeEEEEeCC
Q 013321 21 MEPFSVAVSPSGELLVLDSENSNIYKISTS 50 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~d 50 (445)
.+-.+||.+|+|....+--..++|+++.+.
T Consensus 721 dqIf~~AWSpdGr~~AtVcKDg~~rVy~Pr 750 (1012)
T KOG1445|consen 721 DQIFGIAWSPDGRRIATVCKDGTLRVYEPR 750 (1012)
T ss_pred CceeEEEECCCCcceeeeecCceEEEeCCC
Confidence 456799999999988777778899999876
No 192
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=27.37 E-value=6.9e+02 Score=25.59 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=15.1
Q ss_pred CcceEEEcCCCCEEEEeCCCCEEEEEc
Q 013321 82 HPKGLAVDDRGNIYIADTMNMAIRKIS 108 (445)
Q Consensus 82 ~P~GIavD~dG~LYVAD~~N~rIrkfd 108 (445)
.-..|.+++++.||++..+ ..|+.=+
T Consensus 188 riq~~gf~~~~~lw~~~~G-g~~~~s~ 213 (302)
T PF14870_consen 188 RIQSMGFSPDGNLWMLARG-GQIQFSD 213 (302)
T ss_dssp -EEEEEE-TTS-EEEEETT-TEEEEEE
T ss_pred eehhceecCCCCEEEEeCC-cEEEEcc
Confidence 3458888899999888843 3444333
No 193
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=27.35 E-value=2.6e+02 Score=27.74 Aligned_cols=30 Identities=10% Similarity=0.097 Sum_probs=18.9
Q ss_pred CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCC
Q 013321 21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLS 52 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~ 52 (445)
..|.++|++.+|-+-|.+. ++.. .++.+|.
T Consensus 86 g~~lD~Ai~G~GfF~V~~~-~G~~-~yTR~G~ 115 (260)
T PRK12817 86 GNKTDLAIDGEGFFRVIMA-DGTY-AYTRAGN 115 (260)
T ss_pred CCcceEEECCCcEEEEEcC-CCCe-EEEeCCc
Confidence 7899999987775555443 3422 2666643
No 194
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=27.19 E-value=6.9e+02 Score=25.57 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=44.9
Q ss_pred CCCcceEE---EcCCCCEEEEeCCCCEEEEEcC-CCcEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEE
Q 013321 80 MNHPKGLA---VDDRGNIYIADTMNMAIRKISD-TGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVID 155 (445)
Q Consensus 80 Ln~P~GIa---vD~dG~LYVAD~~N~rIrkfd~-dGv~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD 155 (445)
...|+-|. +.|+-.+|||-.....+++||- .|..+-...+ ..|.--+++ -..++|.+|..-
T Consensus 221 ~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nk--------------gh~gpVhcV-rFSPdGE~yAsG 285 (334)
T KOG0278|consen 221 YKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNK--------------GHFGPVHCV-RFSPDGELYASG 285 (334)
T ss_pred ccCccccccccccCCCceEEecCcceEEEEEeccCCceeeeccc--------------CCCCceEEE-EECCCCceeecc
Confidence 44565443 4567789999888889999993 4543322111 112122333 358899999988
Q ss_pred CCCCeEEEEEC
Q 013321 156 RGNQAIREIQL 166 (445)
Q Consensus 156 ~gn~rIr~i~l 166 (445)
...+.||....
T Consensus 286 SEDGTirlWQt 296 (334)
T KOG0278|consen 286 SEDGTIRLWQT 296 (334)
T ss_pred CCCceEEEEEe
Confidence 87777776653
No 195
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=26.27 E-value=6.4e+02 Score=29.42 Aligned_cols=67 Identities=12% Similarity=0.218 Sum_probs=49.1
Q ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCccCcccCCCceEEEECCCCeEEEEECCCCe
Q 013321 84 KGLAVDDRGNIYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQA 160 (445)
Q Consensus 84 ~GIavD~dG~LYVAD~~N~rIrkfd~dG---v~tiaGg~~G~g~G~~dgp~~~a~f~~P~gI~~vd~dG~LyVaD~gn~r 160 (445)
..|.+-|+..+|++-...+.|++.|.+- +.++-+ ....-++++ +.++|...|.-...+.
T Consensus 596 m~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~-----------------H~~ev~cLa-v~~~G~~vvs~shD~s 657 (888)
T KOG0306|consen 596 MSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDG-----------------HHSEVWCLA-VSPNGSFVVSSSHDKS 657 (888)
T ss_pred eEEEEcccceeEEEecCcceEEeechhhhhhheeecc-----------------chheeeeeE-EcCCCCeEEeccCCce
Confidence 4677778888999998899999998654 333311 233445665 6889999999888889
Q ss_pred EEEEECCC
Q 013321 161 IREIQLHD 168 (445)
Q Consensus 161 Ir~i~l~~ 168 (445)
||.+....
T Consensus 658 IRlwE~td 665 (888)
T KOG0306|consen 658 IRLWERTD 665 (888)
T ss_pred eEeeeccC
Confidence 99888654
No 196
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=26.12 E-value=8.5e+02 Score=26.28 Aligned_cols=31 Identities=23% Similarity=0.201 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCcEEEEeCCCCeEEEEeCCC
Q 013321 21 MEPFSVAVSPSGELLVLDSENSNIYKISTSL 51 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg 51 (445)
++-..|+.+|||..+++...++.|..+++..
T Consensus 158 ~WVlcvawsPDgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 158 NWVLCVAWSPDGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred cEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence 5678899999999999999999999999763
No 197
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=25.67 E-value=9.1e+02 Score=26.47 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=39.8
Q ss_pred CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCCEEEEEcC-
Q 013321 31 SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD- 109 (445)
Q Consensus 31 dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~rIrkfd~- 109 (445)
+|.|||++. +++|+.++... |+..-....... . ......+.-....++++. ++.|||++. ..+|..+|.
T Consensus 69 ~g~vyv~s~-~g~v~AlDa~T---Gk~lW~~~~~~~-~---~~~~~~~~~~~~rg~av~-~~~v~v~t~-dg~l~ALDa~ 138 (527)
T TIGR03075 69 DGVMYVTTS-YSRVYALDAKT---GKELWKYDPKLP-D---DVIPVMCCDVVNRGVALY-DGKVFFGTL-DARLVALDAK 138 (527)
T ss_pred CCEEEEECC-CCcEEEEECCC---CceeeEecCCCC-c---ccccccccccccccceEE-CCEEEEEcC-CCEEEEEECC
Confidence 678999876 45789998763 444332211000 0 000000000012456665 567898875 568999995
Q ss_pred CCcEEE
Q 013321 110 TGVTTI 115 (445)
Q Consensus 110 dGv~ti 115 (445)
+|....
T Consensus 139 TGk~~W 144 (527)
T TIGR03075 139 TGKVVW 144 (527)
T ss_pred CCCEEe
Confidence 574443
No 198
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=24.87 E-value=9.9e+02 Score=26.59 Aligned_cols=26 Identities=15% Similarity=0.442 Sum_probs=21.7
Q ss_pred EEEEcCCCcEEEEeCCCCeEEEEeCC
Q 013321 25 SVAVSPSGELLVLDSENSNIYKISTS 50 (445)
Q Consensus 25 gIAVdpdG~LYVaDs~n~rI~kid~d 50 (445)
.|.+...|.||+-|+.+.+|-+++-+
T Consensus 280 rIvFq~~GdIylydP~td~lekldI~ 305 (668)
T COG4946 280 RIVFQNAGDIYLYDPETDSLEKLDIG 305 (668)
T ss_pred EEEEecCCcEEEeCCCcCcceeeecC
Confidence 57777788899999999999988765
No 199
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=24.81 E-value=8.8e+02 Score=25.96 Aligned_cols=23 Identities=9% Similarity=0.216 Sum_probs=16.3
Q ss_pred eEEEEECCCCeEEEEECCCCcee
Q 013321 150 SLLVIDRGNQAIREIQLHDDDCS 172 (445)
Q Consensus 150 ~LyVaD~gn~rIr~i~l~~~~~~ 172 (445)
.||+.|..+..+.+++..+..+.
T Consensus 307 ~I~~~~~~g~~~~riT~~~~~~~ 329 (425)
T COG0823 307 QIYLYDLEGSQVTRLTFSGGGNS 329 (425)
T ss_pred ceEEECCCCCceeEeeccCCCCc
Confidence 67777777777777777665544
No 200
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=24.74 E-value=8.9e+02 Score=26.01 Aligned_cols=72 Identities=14% Similarity=0.225 Sum_probs=38.0
Q ss_pred CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCCEEEEEcC-
Q 013321 31 SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD- 109 (445)
Q Consensus 31 dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~rIrkfd~- 109 (445)
+|.||+.+. +++|+.++... |++.......... . .. ...-+. .++++..++.|||++. ++.|..+|.
T Consensus 61 ~g~vy~~~~-~g~l~AlD~~t---G~~~W~~~~~~~~--~-~~--~~~~~~--~g~~~~~~~~V~v~~~-~g~v~AlD~~ 128 (488)
T cd00216 61 DGDMYFTTS-HSALFALDAAT---GKVLWRYDPKLPA--D-RG--CCDVVN--RGVAYWDPRKVFFGTF-DGRLVALDAE 128 (488)
T ss_pred CCEEEEeCC-CCcEEEEECCC---ChhhceeCCCCCc--c-cc--cccccc--CCcEEccCCeEEEecC-CCeEEEEECC
Confidence 678898875 47899998753 3333221111000 0 00 000111 2445543478888875 578899985
Q ss_pred CCcEE
Q 013321 110 TGVTT 114 (445)
Q Consensus 110 dGv~t 114 (445)
+|...
T Consensus 129 TG~~~ 133 (488)
T cd00216 129 TGKQV 133 (488)
T ss_pred CCCEe
Confidence 56433
No 201
>PLN00181 protein SPA1-RELATED; Provisional
Probab=24.16 E-value=1.1e+03 Score=26.89 Aligned_cols=69 Identities=4% Similarity=-0.060 Sum_probs=39.0
Q ss_pred eEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcC-CCCEEEEeCCC
Q 013321 24 FSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMN 101 (445)
Q Consensus 24 ~gIAVdp-dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD~~N 101 (445)
.++++++ ++.++++-..++.|..++... ++...... ++ -..-.+|++++ +|.++++=...
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~---~~~~~~~~------~H---------~~~V~~l~~~p~~~~~L~Sgs~D 597 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVAR---SQLVTEMK------EH---------EKRVWSIDYSSADPTLLASGSDD 597 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCC---CeEEEEec------CC---------CCCEEEEEEcCCCCCEEEEEcCC
Confidence 4566655 355555555667777776542 22111111 11 01224788875 67777776667
Q ss_pred CEEEEEcCC
Q 013321 102 MAIRKISDT 110 (445)
Q Consensus 102 ~rIrkfd~d 110 (445)
+.|+.+|..
T Consensus 598 g~v~iWd~~ 606 (793)
T PLN00181 598 GSVKLWSIN 606 (793)
T ss_pred CEEEEEECC
Confidence 888888854
No 202
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=24.09 E-value=2.7e+02 Score=30.53 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=45.2
Q ss_pred EEEEcCCCcEEEEeCCCCeEEEEeCCCCC-CCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCCE
Q 013321 25 SVAVSPSGELLVLDSENSNIYKISTSLSP-YSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMA 103 (445)
Q Consensus 25 gIAVdpdG~LYVaDs~n~rI~kid~dg~~-~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~r 103 (445)
.|++.|+|..+++-+..++|..++....+ ...-..+.|- -..| .+..+.+.+||...++=-..++
T Consensus 390 ~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh--~vaG------------ys~~v~fSpDG~~l~SGdsdG~ 455 (503)
T KOG0282|consen 390 CLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGH--SVAG------------YSCQVDFSPDGRTLCSGDSDGK 455 (503)
T ss_pred ceecCCCCCeehhhccCceEEEEecccccccCHhhhhcce--eccC------------ceeeEEEcCCCCeEEeecCCcc
Confidence 67888899999999989999988754211 0000111111 0011 4667777888876666556777
Q ss_pred EEEEcCCC
Q 013321 104 IRKISDTG 111 (445)
Q Consensus 104 Irkfd~dG 111 (445)
+..+|-..
T Consensus 456 v~~wdwkt 463 (503)
T KOG0282|consen 456 VNFWDWKT 463 (503)
T ss_pred EEEeechh
Confidence 77777544
No 203
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=24.05 E-value=5.7e+02 Score=26.14 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=23.7
Q ss_pred ECCCCeEEEEECCCCeEEEEECCCCceeec
Q 013321 145 VGSSCSLLVIDRGNQAIREIQLHDDDCSDN 174 (445)
Q Consensus 145 vd~dG~LyVaD~gn~rIr~i~l~~~~~~~~ 174 (445)
-.++|.|++.-.+++.|+.|++-+..+...
T Consensus 51 WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 51 WSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred ECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 468888888888889999998888666553
No 204
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=23.97 E-value=92 Score=31.82 Aligned_cols=61 Identities=23% Similarity=0.367 Sum_probs=37.5
Q ss_pred CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCCEEEEEcCC
Q 013321 31 SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT 110 (445)
Q Consensus 31 dG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~rIrkfd~d 110 (445)
.+.+||.|..+.++..+.... +......=+| +| ..|++-.+++||+.+.....++++..+
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~---~~~~~~~~sP-------~g----------~~~~~v~~~nly~~~~~~~~~~~lT~d 81 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPP---PKLQDAKWSP-------DG----------KYIAFVRDNNLYLRDLATGQETQLTTD 81 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EE---TTBSEEEE-S-------SS----------TEEEEEETTEEEEESSTTSEEEESES-
T ss_pred ceeEEEEecCCCceEECcCCc---cccccceeec-------CC----------CeeEEEecCceEEEECCCCCeEEeccc
Confidence 356888888888887776531 1111111111 11 267788888999999877789999888
Q ss_pred C
Q 013321 111 G 111 (445)
Q Consensus 111 G 111 (445)
|
T Consensus 82 g 82 (353)
T PF00930_consen 82 G 82 (353)
T ss_dssp -
T ss_pred c
Confidence 8
No 205
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.74 E-value=8.2e+02 Score=25.26 Aligned_cols=147 Identities=15% Similarity=0.131 Sum_probs=72.9
Q ss_pred CCCCceEEEEcCCC-cEEEEeCCC------CeEEEEeCCCCCCCccEEEec-CCCCcccCCCCCccC-------ccCCCc
Q 013321 19 FGMEPFSVAVSPSG-ELLVLDSEN------SNIYKISTSLSPYSRPKLVAG-SPEGYYGHVDGRPRG-------ARMNHP 83 (445)
Q Consensus 19 ~g~~P~gIAVdpdG-~LYVaDs~n------~rI~kid~dg~~~G~v~~vaG-~~~G~~G~~dG~~~~-------a~Ln~P 83 (445)
.|+.|+.|.+.+|| .|.|++.+= +| .+++.+. -+..++.- .. +|.+.+ -.-+.-
T Consensus 97 ~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR-~kLNl~t---M~psL~~ld~~-------sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 97 HGIGPHELLLMPDGETLVVANGGIETHPDSGR-AKLNLDT---MQPSLVYLDAR-------SGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcChhhEEEcCCCCEEEEEcCCCccCcccCc-eecChhh---cCCceEEEecC-------CCceeeeeecCccccccce
Confidence 34779999999999 688886431 11 1222221 11111111 11 111110 011234
Q ss_pred ceEEEcCCCCEEEEeCCCCE-------EEEEcCCCcEEEecCcccCCCCCCCCCcc-Cccc-CCCceEEEECCCC-eEEE
Q 013321 84 KGLAVDDRGNIYIADTMNMA-------IRKISDTGVTTIAGGKWSRGVGHVDGPSE-DAKF-SNDFDVVYVGSSC-SLLV 153 (445)
Q Consensus 84 ~GIavD~dG~LYVAD~~N~r-------Irkfd~dGv~tiaGg~~G~g~G~~dgp~~-~a~f-~~P~gI~~vd~dG-~LyV 153 (445)
.-|+++.+|.++++-..... |-.++.++.... ...+.. ...| ..--+|+ ++.++ .|.+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~-----------~~~p~~~~~~l~~Y~gSIa-~~~~g~~ia~ 233 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRL-----------LPAPEEQWRRLNGYIGSIA-ADRDGRLIAV 233 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCccee-----------ccCChHHHHhhCCceEEEE-EeCCCCEEEE
Confidence 57889999998888665321 222222221110 011111 1223 2334555 55665 5668
Q ss_pred EECCCCeEEEEECCCCceeecCCCCccceEEEEec
Q 013321 154 IDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVA 188 (445)
Q Consensus 154 aD~gn~rIr~i~l~~~~~~~~~~~g~P~gIav~~~ 188 (445)
+-.-++++..++.....+.......-.+|++....
T Consensus 234 tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~ 268 (305)
T PF07433_consen 234 TSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDD 268 (305)
T ss_pred ECCCCCEEEEEECCCCCEeeccccCceeeeeecCC
Confidence 88889999999877665554433333345554443
No 206
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=23.37 E-value=3.4e+02 Score=26.91 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=19.2
Q ss_pred CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCC
Q 013321 21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLS 52 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~ 52 (445)
..|.++|+..+|-+-|.+. ++.+. ++.+|.
T Consensus 90 g~~lDlAI~G~GFF~V~~~-~G~~~-YTR~G~ 119 (256)
T PRK12818 90 DKPTDFAIQGRGFFTVERN-AGNNY-YTRDGH 119 (256)
T ss_pred CCcceEEECCCceEEEEcC-CCCeE-EeeCCC
Confidence 7899999988875555443 34322 666643
No 207
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=23.18 E-value=7.4e+02 Score=24.52 Aligned_cols=29 Identities=10% Similarity=0.017 Sum_probs=18.5
Q ss_pred CCceEEEEcCCCcEEEEeCCCCeEEEEeCCC
Q 013321 21 MEPFSVAVSPSGELLVLDSENSNIYKISTSL 51 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg 51 (445)
..|.++|++.+|-+ +....++.. .++.+|
T Consensus 90 g~~lD~AI~G~GfF-~V~~~~G~~-~yTR~G 118 (260)
T PRK12694 90 GNSKDVAINGQGFF-QVLMPDGTT-AYTRDG 118 (260)
T ss_pred CCcceEEEcCCcEE-EEEcCCCCe-EEeeCC
Confidence 78999999877644 444444432 266664
No 208
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=23.08 E-value=9e+02 Score=25.50 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=42.2
Q ss_pred ceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCC
Q 013321 23 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM 102 (445)
Q Consensus 23 P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~ 102 (445)
...+.+++.|.+..+.-.|++|+.++.++-. +..+.+ |...--+.||..++|...++-+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~---iar~ls---------------aH~~pi~sl~WS~dgr~LltsS~D~ 87 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR---IARMLS---------------AHVRPITSLCWSRDGRKLLTSSRDW 87 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc---hhhhhh---------------ccccceeEEEecCCCCEeeeecCCc
Confidence 4577888889888888889999999987311 111100 1122224677777777666666555
Q ss_pred EEEEEc
Q 013321 103 AIRKIS 108 (445)
Q Consensus 103 rIrkfd 108 (445)
.|..+|
T Consensus 88 si~lwD 93 (405)
T KOG1273|consen 88 SIKLWD 93 (405)
T ss_pred eeEEEe
Confidence 566555
No 209
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=22.31 E-value=9.5e+02 Score=25.44 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=24.0
Q ss_pred cCCCcceEEEcCCCCEEEEeCCCCEEEEEcC
Q 013321 79 RMNHPKGLAVDDRGNIYIADTMNMAIRKISD 109 (445)
Q Consensus 79 ~Ln~P~GIavD~dG~LYVAD~~N~rIrkfd~ 109 (445)
++.....|+|.+||.-.+|-. +++|++||.
T Consensus 157 e~taAhsL~Fs~DGeqlfaGy-krcirvFdt 186 (406)
T KOG2919|consen 157 EYTAAHSLQFSPDGEQLFAGY-KRCIRVFDT 186 (406)
T ss_pred hhhhheeEEecCCCCeEeecc-cceEEEeec
Confidence 456678999999999666643 789999995
No 210
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=21.87 E-value=1.1e+03 Score=26.24 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=19.5
Q ss_pred CCceEEEE-CCCCeEEEEECCCCeEEEEECCC
Q 013321 138 NDFDVVYV-GSSCSLLVIDRGNQAIREIQLHD 168 (445)
Q Consensus 138 ~P~gI~~v-d~dG~LyVaD~gn~rIr~i~l~~ 168 (445)
.|++++++ ...|..+|.|..+..+..+..+.
T Consensus 416 hpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~ 447 (626)
T KOG2106|consen 416 HPSGVVAVGTATGRWFVLDTETQDLVTIHTDN 447 (626)
T ss_pred cCcceEEEeeccceEEEEecccceeEEEEecC
Confidence 45555444 45577888888776666665553
No 211
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=21.78 E-value=7.3e+02 Score=24.22 Aligned_cols=65 Identities=22% Similarity=0.352 Sum_probs=40.1
Q ss_pred CceEEEEcCCCcEE-EEe--CCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEe
Q 013321 22 EPFSVAVSPSGELL-VLD--SENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD 98 (445)
Q Consensus 22 ~P~gIAVdpdG~LY-VaD--s~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD 98 (445)
.+..+|++++|..+ ++. .....++....+ +....+.. | ..|..| .+|++|.+|+++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~----~~~~~~~~------g--------~~l~~P---S~d~~g~~W~v~ 83 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG----GPVRPVLT------G--------GSLTRP---SWDPDGWVWTVD 83 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC----Ccceeecc------C--------Cccccc---cccCCCCEEEEE
Confidence 68889999998743 332 244566666554 22333220 0 024555 578899999998
Q ss_pred CCCCEEEEE
Q 013321 99 TMNMAIRKI 107 (445)
Q Consensus 99 ~~N~rIrkf 107 (445)
......+.+
T Consensus 84 ~~~~~~~~~ 92 (253)
T PF10647_consen 84 DGSGGVRVV 92 (253)
T ss_pred cCCCceEEE
Confidence 876666655
No 212
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=21.63 E-value=5.7e+02 Score=25.72 Aligned_cols=70 Identities=19% Similarity=0.159 Sum_probs=0.0
Q ss_pred eEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCCCE
Q 013321 24 FSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMA 103 (445)
Q Consensus 24 ~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N~r 103 (445)
..|||||.|.|.++....+....++..| |+...-.--. -..-..|-+.|.-....+-+..+.
T Consensus 235 aav~vdpsgrll~sg~~dssc~lydirg---~r~iq~f~ph---------------sadir~vrfsp~a~yllt~syd~~ 296 (350)
T KOG0641|consen 235 AAVAVDPSGRLLASGHADSSCMLYDIRG---GRMIQRFHPH---------------SADIRCVRFSPGAHYLLTCSYDMK 296 (350)
T ss_pred EEEEECCCcceeeeccCCCceEEEEeeC---CceeeeeCCC---------------ccceeEEEeCCCceEEEEecccce
Q ss_pred EEEEcCCC
Q 013321 104 IRKISDTG 111 (445)
Q Consensus 104 Irkfd~dG 111 (445)
|+.-|-.|
T Consensus 297 ikltdlqg 304 (350)
T KOG0641|consen 297 IKLTDLQG 304 (350)
T ss_pred EEEeeccc
No 213
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=21.61 E-value=9.3e+02 Score=25.11 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=47.4
Q ss_pred CceEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCcccCCCCCccCccCCCcceEEEcCCCCEEEEeCCC
Q 013321 22 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 101 (445)
Q Consensus 22 ~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~~~G~v~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~N 101 (445)
.-+-+.++|+|.++++....+.|+.+...+ ....+.-. .|.+| .-.++....|++..++-...
T Consensus 49 eI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g----dceN~~~l-kgHsg------------AVM~l~~~~d~s~i~S~gtD 111 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGGSDRAIVLWNVYG----DCENFWVL-KGHSG------------AVMELHGMRDGSHILSCGTD 111 (338)
T ss_pred eEEEEEECCCCCeEeecCCcceEEEEeccc----cccceeee-ccccc------------eeEeeeeccCCCEEEEecCC
Confidence 346788999999999988888888887542 22222111 12222 22367777888877777777
Q ss_pred CEEEEEcC
Q 013321 102 MAIRKISD 109 (445)
Q Consensus 102 ~rIrkfd~ 109 (445)
.+|+.+|.
T Consensus 112 k~v~~wD~ 119 (338)
T KOG0265|consen 112 KTVRGWDA 119 (338)
T ss_pred ceEEEEec
Confidence 88888884
No 214
>PRK12689 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=21.58 E-value=2.8e+02 Score=27.49 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=18.7
Q ss_pred CCceEEEEcCCCcEEEEeCCCCeEEEEeCCCC
Q 013321 21 MEPFSVAVSPSGELLVLDSENSNIYKISTSLS 52 (445)
Q Consensus 21 ~~P~gIAVdpdG~LYVaDs~n~rI~kid~dg~ 52 (445)
..|.++|++.+|-+-|.+ .++. .++.+|.
T Consensus 82 g~~lDlAI~G~GFF~V~~-~~G~--~yTR~G~ 110 (253)
T PRK12689 82 KNPLDVAIDGDAFLAVQT-PQGE--RYTRDGA 110 (253)
T ss_pred CCceeEEECCCcEEEEEe-CCCc--EEEeCCc
Confidence 789999998877554444 3442 3666643
Done!