BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013322
         (445 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FCP|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
           Klebsiella Pneumoniae
 pdb|3FCP|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
           Klebsiella Pneumoniae
 pdb|3FCP|C Chain C, Crystal Structure Of Muconate Lactonizing Enzyme From
           Klebsiella Pneumoniae
 pdb|3FCP|D Chain D, Crystal Structure Of Muconate Lactonizing Enzyme From
           Klebsiella Pneumoniae
 pdb|3FCP|E Chain E, Crystal Structure Of Muconate Lactonizing Enzyme From
           Klebsiella Pneumoniae
 pdb|3FCP|F Chain F, Crystal Structure Of Muconate Lactonizing Enzyme From
           Klebsiella Pneumoniae
 pdb|3FCP|G Chain G, Crystal Structure Of Muconate Lactonizing Enzyme From
           Klebsiella Pneumoniae
 pdb|3FCP|H Chain H, Crystal Structure Of Muconate Lactonizing Enzyme From
           Klebsiella Pneumoniae
          Length = 381

 Score = 35.8 bits (81), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 128 KARNRRVKFKIP--RLGAKSRRFSAIVKGFFQNSSCKIKFFMTWISSLESFGGREFLAL- 184
           + R+R  K KI    L    R   AIV+     +S ++     W ++  + G RE  A+ 
Sbjct: 161 EGRHRAFKLKIGARELATDLRHTRAIVEALGDRASIRVDVNQAWDAATGAKGCRELAAMG 220

Query: 185 ----ESLYKSHPNACLVMVSNSLDS 205
               E    +H NA LV +S  +++
Sbjct: 221 VDLIEQPVSAHDNAALVRLSQQIET 245


>pdb|1Y81|A Chain A, Conserved Hypothetical Protein Pfu-723267-001 From
           Pyrococcus Furiosus
          Length = 138

 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 205 SRKGRLIFKQFLDNGFKVIAVKPDYDYI 232
           ++ G +I K  L  GF+V+ V P+YD I
Sbjct: 27  AKYGNIILKDLLSKGFEVLPVNPNYDEI 54


>pdb|4DZO|A Chain A, Structure Of Human Mad1 C-Terminal Domain Reveals Its
           Involvement In Kinetochore Targeting
 pdb|4DZO|B Chain B, Structure Of Human Mad1 C-Terminal Domain Reveals Its
           Involvement In Kinetochore Targeting
          Length = 123

 Score = 28.1 bits (61), Expect = 9.5,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 184 LESLYKSHPNACLVMVSNSLDSRKGRLIFKQFLDNGFKVIAV---KPDYDYIFKNTYAQE 240
           L SLY  HP  CL+  + S    K +L+  +F     ++I V   + D    F ++   E
Sbjct: 56  LTSLYAEHPGDCLIFKATSPSGSKXQLLETEFSHTVGELIEVHLRRQDSIPAFLSSLTLE 115

Query: 241 WFNR 244
            F+R
Sbjct: 116 LFSR 119


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,429,834
Number of Sequences: 62578
Number of extensions: 486407
Number of successful extensions: 1231
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1230
Number of HSP's gapped (non-prelim): 3
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)